Citrus Sinensis ID: 004600

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740---
Protein Sequence
MGCAQSKIDNEEAVARSKDRRNLMKDAVSARNAFASGHSGYSFALKNVGAALSDFAHGESVDNQQHLEQPLDPTPPPPPPLSSLDTLPPPPPPLPNFSPSPIKRAASLPVISKNKKQTLDFDNVAITEDEEEEEDEEDENENDIEEEEEEEVEAEEDESITQKNKNKNKFGGSHRDMASASTSSPRTAEMRPTPAAAWEYFFMVDDHLAGPSLNHAEEEERHMENVNANDNVFSNKTTINSNIKNNISIDSNKNVDDFMKNDGDINVSVPEKVEGKVVIEHASTAPAEFVSKRAIATVSLMKVLNQIDDHFLKASQSAKDVSNMLEANRLHYHSNFADNRALIDHSARVMRVITWNRSFRGLGLPHAEIERNEADLEDYETLAIVLDKMLAWEKKLFEEVKRAELMKLEYQRKVAMLNKLKKRGSANEMLEKTKAAVAHLHTKYVVDMQTMDSSVSEVNRLRDEELYPKLVALVNGMAKMWENMCIHHDSQLTIVSELKPLDIAHAVKETTQHHHERTEELFTVVQKWHTEFEKFVNHQKQFIQALTSWLKLNLIPIESSLKERVTSPPRAPNPPIQALLHSWHDYLEKLPDEIAKSAISSFAAVIKTIMLHQEEEMKLKEKCEETRKELLRKTHAYEEWHRKYKKTHSEESEAERGDDANTRDPVLDRQIVIESLRKRLEEETEAFRRHCLQVREKSLGSLKLRLPDLFRAVSDFAHASFDAYEKLRSITQSQNSNGGRVAS
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcHHHHHHHHHccccccccccccccccccccccccEEEcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHEEEEccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccc
Coil and Loop (DISEMBL)
mgcaqskidneEAVARSKDRRNLMKDAVSARNafasghsgySFALKNVGAAlsdfahgesvdnqqhleqpldptpppppplssldtlpppppplpnfspspikraaslpvisknkkqtldfdnvaitedeeeeedeedenendieeeeeeeveaeedesitqknknknkfggshrdmasastssprtaemrptpaaAWEYFFMVddhlagpslnhaeeeerhmenvnandnvfsnkttinsniknnisidsnknvddfmkndgdinvsvpekvEGKVVIEhastapaefVSKRAIATVSLMKVLNQIDDHFLKASQSAKDVSNMLEANrlhyhsnfadnraliDHSARVMRVITWnrsfrglglphaeierneadleDYETLAIVLDKMLAWEKKLFEEVKRAELMKLEYQRKVAMLNKLKKRGSANEMLEKTKAAVAHLHTKYVVDMQTMDSSVsevnrlrdeeLYPKLVALVNGMAKMWENMcihhdsqltivselkplDIAHAVKETTQHHHERTEELFTVVQKWHTEFEKFVNHQKQFIQALTSWLKLNlipiesslkervtspprapnppiqALLHSWHDYLEKLPDEIAKSAISSFAAVIKTIMLHQEEEMKLKEKCEETRKELLRKTHAYEEWHRKYKkthseeseaergddantrdpvldRQIVIESLRKRLEEETEAFRRHCLQVREKSLGSLKLRLPDLFRAVSDFAHASFDAYEKLRSITQsqnsnggrvas
Flexible Loop (DISEMBL)
mgcaqskidneeavarskdrrnLMKDAVSARNAFASGHSGYSFALKNVGAALSDFAHGESVDNQQHLEQPLDPTPPPPPPLSSLDTLPPPPPPLPNFSPSPIKRAASlpvisknkkqtldfdnvaitedeeeeedeedenendieeeeeeeveaeedesitqknknknkfggshrdmasastssprtaeMRPTPAAAWEYFFMVDDHLAGPSLNHAEEEERHMENVNANDNVFSNKTtinsniknnisidsnKNVDDFMKNDGDINVSVPEKVEGKVVIEHastapaefvsKRAIATVSLMKVLNQIDDHFLKASQSAKDVSNMLEANRLHYHSNFADNRALIDHSARVMRVITWNrsfrglglphaeierneadlEDYETLAIVLDKMLAWEKKLFEEVKRAELMKLEYQRKVAMLNKLKKRGSANEMLEKTKAAVAHLHTKYVVDMQTMDSSVSEvnrlrdeelYPKLVALVNGMAKMWENMCIHHDSQLTIVSELKPLDIAHAVKETTQHHHERTEELFTVVQKWHTEFEKFVNHQKQFIQALTSWLKLNLIPIESSLKERVTSPPRAPNPPIQALLHSWHDYLEKLPDEIAKSAISSFAAVIKTIMLHQEEEMKLKEKCEETRKEllrkthayeewhrkykkthseeseaergddantrdpvldrQIVIESLRKRLEEETEAFRRHCLQVREKSLGSLKLRLPDLFRAVSDFAHASFDAYEKLRSitqsqnsnggrvas
Low Complexity Region (SEG)
MGCAQSKIDNEEAVARSKDRRNLMKDAVSARNAFASGHSGYSFALKNVGAALSDFAHGESVDNQQHLEQpldptpppppplssldtlpppppplpnfspspIKRAASLPVISKNKKQTLDFDNVAITedeeeeedeedenendieeeeeeeveaeedeSITQKNKNKNKFGGSHRDMASASTSSPRTAEMRPTPAAAWEYFFMVDDHLAGPSLNHAEEEERHMENVNANDNVFsnkttinsniknnisidsnknVDDFMKNDGDINVSVPEKVEGKVVIEHASTAPAEFVSKRAIATVSLMKVLNQIDDHFLKASQSAKDVSNMLEANRLHYHSNFADNRALIDHSARVMRVITWNRSFRGLGLPHAEIERNEADLEDYETLAIVLDKMLAWEKKLFEEVKRAELMKLEYQRKVAMLNKLKKRGSANEMLEKTKAAVAHLHTKYVVDMQTMDSSVSEVNRLRDEELYPKLVALVNGMAKMWENMCIHHDSQLTIVSELKPLDIAHAVKettqhhherteeLFTVVQKWHTEFEKFVNHQKQFIQALTSWLKLNLIPIESSLKERVTSPPRAPNPPIQALLHSWHDYLEKLPDEIAKSAISSFAAVIKTIMLHQeeemklkekceeTRKELLRKTHAYEEWHRKYKKTHSEESEAERGDDANTRDPVLDRQIVIESLRKRLEEETEAFRRHCLQVREKSLGSLKLRLPDLFRAVSDFAHASFDAYEKLRSITQSQNSNGGRVAS
Disordered region (IsUnstruct)
***************************************GYSFALKNVGAAL***********************************************************************************************************************************************AAWEYFFMVDDHLA*******************************************************INVSVPEKVEGKVVIEHASTAPAEFVSKRAIATVSLMKVLNQIDDHFLKAS*****VSNMLEANRLHYHSNFADNRALIDHSARVMRVITWNRSFRGLGLPHAEIERNEADLEDYETLAIVLDKMLAWEKKLFEEVKRAELMKLEYQRKVAMLNKL************TKAAVAHLHTKYVVDMQTMD**VSEVNRLRDEELYPKLVALVNGMAKMWENMCIHHDSQLTIVSELKPLDIAHAVKETTQHHHERTEELFTVVQKWHTEFEKFVNHQKQFIQALTSWLKLNLIPIE*****************IQALLHSWHDYLEKLPDEIAKSAISSFAAVIKTIMLH*********************************************************QIVIESL*******TEAFRRHCLQVREKSLGSLKLRLPDLFRAVSDFAHASFDAYE******************
Disordered Region (DISOPRED)
****QSKIDNEEAVARSKDRRNLMKDAVSARNAFASGHSGYSFALKNVGAALSDFAHGE***************************************************************************************************************************************************************************************************************************************************VLNQIDDHFLKASQSAKDVSNMLEANR****************************************************LAIVLDKMLAWEKKLFEEVKRAELMKLEYQRKVAMLN*********EMLEKTKAAVAHLHTKYVVDMQTMDSSVSEVNRLRDEELYPKLVALVNGMAKMWENMCIHHDSQLTIVSEL*******************TEELFTVVQKWHTEFEKFVNHQKQFIQALTSWLKLNL********************PIQALLHSWHDYLEKLPDEIAKSAISSFAAVIKTIMLH********************************************************************************QVREKSLGSLKLRLPDLFRAVSDFAHASFDAYEK*****************
Disordered Region (DISEMBL)
*******************RRNLMKDAVSARNAFASGHSGYSFALKNVGAALSDFAHGESVDNQQHLEQPLDPTPPPPPPLSSLDTLPPPPPPLPNFSPSPIKRAASLPVISKNKKQTLDFDNVAIT**********************************QKNKNKNKFG********************PTPAAAWEYFFMVDDHLAGPSLNHAEEEERHMENVNANDNVFSNKTTINSNIKNNISIDSNKNVDDFMKNDGDINVSVPEKVEGKVVIEHASTAPAEFVSKRAIATVSLMKVLNQIDDHFLKASQSAKDVSNMLEANRLHYHSNFADNRALIDHSARVMRVITWNRSFRGLGLPHAEIERNEADLEDYETLAIVLDKMLAWEKKLFEEVKRAELMKLEYQRKVAMLNKLKKRGSANEMLEKTKAAVAHLHTKYVVDMQTMDSSVSEVNRLRDEELYPKLVALVNGMAKMWENMCIHHDSQLTIVSELKPLDIAHAVK*********TEELFTVVQKWHTEFEKFVNHQKQFIQALTSWLKLNLIPIESSLK********APNPPIQALLHSWHDYLEKLPDEIAKSAISSFAAVIKTIMLHQEEEMKLKEKCEETRKELLRKTHAYEEWH********************TRDPVLDRQIVIESLRKRLEEETEAFRRHCLQVREKSLGSLKLRLPDLFRAVSDFAHASFDAYEKLRSI*************
Disordered Region (DISPRO)
*******IDNEEAVARSKDRRNLMKDAVSARNAFASGHSGYSFALKNVGAALSDFAHG***********************************************************************************************************************************************************************************************************************************************VSLMKVLNQIDDHFLKASQSAKDVSNMLEANRLHYHSNFADNRALIDHSARVMRVITWNR***********************TLAIVLDKMLAWEKKLFEEVKRAELMKLEYQRKVAMLNKLKKRGSANEMLEKTKAAVAHLHTKYVVDMQTMDSSVSEVNRLRDEELYPKLVALVNGMAKMWENMCIHHDSQLTIVSELKPLDIAH**KETTQHHHERTEELFTVVQKWHTEFEKFVNHQKQFIQALTSWLKLNLIPI*********S**RAPNPPIQALLHSWHDYLEKLPDEIAKSAISSFAAVIKTIMLHQEEEMKLKEKCEETRKELLRKTHAYEEWHRKYKKTHS**************DPVLDRQIVIESLRKRLEEETEAFRRHCLQVREKSLGSLKLRLPDLFRAVSDFAHASFDAYEKLRSITQ***********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGCAQSKIDNEEAVARSKDRRNLMKDAVSARNAFASGHSGYSFALKNVGAALSDFAHGESVDNQQHLEQPLDPTPPPPPPLSSLDTLPPPPPPLPNFSPSPIKRAASLPVISKNKKQTLDFDNVAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxNKNKFGGSHRDMASASTSSPRTAEMRPTPAAAWEYFFMVDDHLAGPSLNHAEEEERHMENVNANDNVFSNKTTINSNIKNNISIDSNKNVDDFMKNDGDINVSVPEKVEGKVVIEHASTAPAEFVSKRAIATVSLMKVLNQIDDHFLKASQSAKDVSNMLEANRLHYHSNFADNRALIDHSARVMRVITWNRSFRGLGLPHAEIERNEADLEDYETLAIVLDKMLAWEKKLFEEVKRAELMKLEYQRKVAMLNKLKKRGSANEMLEKTKAAVAHLHTKYVVDMQTMDSSVSEVNRLRDEELYPKLVALVNGMAKMWENMCIHHDSQLTIVSELKPLDIAHAVKETTQHHHERTEELFTVVQKWHTEFEKFVNHQKQFIQALTSWLKLNLIPIESSLKERVTSPPRAPNPPIQALLHSWHDYLEKLPDEIAKSAISSFAAVIKTxxxxxxxxxxxxxxxxxxxxxLLRKTHAYEEWHRKYKKTHSEESEAERGDDANTRDPVLDRQIVIESLRKRLEEETEAFRRHCLQVREKSLGSLKLRLPDLFRAVSDFAHASFDAYEKLRSITQSQNSNGGRVAS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	743
255551072	728	conserved hypothetical protein [Ricinus	0.939	0.958	0.576	0.0
297812771	764	hypothetical protein ARALYDRAFT_910621 [	0.969	0.942	0.539	0.0
356518304	711	PREDICTED: uncharacterized protein LOC10	0.703	0.735	0.596	0.0
225430073	707	PREDICTED: uncharacterized protein LOC10	0.751	0.789	0.570	0.0
224141803	417	predicted protein [Populus trichocarpa]	0.557	0.992	0.725	1e-179
357466621	712	hypothetical protein MTR_3g109450 [Medic	0.718	0.75	0.604	1e-178
15239473	775	uncharacterized protein [Arabidopsis tha	0.625	0.6	0.651	1e-177
449531005	696	PREDICTED: uncharacterized protein LOC10	0.925	0.988	0.499	1e-174
357454977	760	hypothetical protein MTR_2g102050 [Medic	0.975	0.953	0.452	1e-174
449465280	722	PREDICTED: uncharacterized protein LOC10	0.960	0.988	0.497	1e-173

>gi|255551072|ref|XP_002516584.1| conserved hypothetical protein [Ricinus communis] gi|223544404|gb|EEF45925.1| conserved hypothetical protein [Ricinus communis]

 Score =  779 bits (2012), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/767 (57%), Positives = 560/767 (73%), Gaps = 69/767 (8%)

Query: 1   MGCAQSKIDNEEAVARSKDRRNLMKDAVSARNAFASGHSGYSFALKNVGAALSDFAHGES 60
           MGCAQSK++NEE+VAR K+R+ LMK+AV ARNAFA+GHSG++ +LKN GAALSD+A GE 
Sbjct: 1   MGCAQSKVENEESVARCKERKILMKEAVVARNAFAAGHSGFTISLKNTGAALSDYAQGEV 60

Query: 61  VDN-QQHLEQPLDPTPPPPPPLSSLDTLPPPPPPLPNFSPSP-----------IKRAASL 108
           +D+ Q H  QP    PPPPPP        PPPPP     P P           IKRA S+
Sbjct: 61  LDSHQLHEAQPPISQPPPPPPPPPPMENFPPPPPPMENFPPPPPPLPNFSPSPIKRALSM 120

Query: 109 PVISKNKKQTLDFDNVAITEDEEEEEDEEDENENDIEEEEEEEVEAEEDESITQKNKNKN 168
           P I   ++  ++ D +AI E+EEEEE               EE E E D     KNK+  
Sbjct: 121 PEIPMKQQGKVEIDPIAIVEEEEEEE---------------EEEEHELDHERAHKNKD-- 163

Query: 169 KFGGSHRDMASASTSSPRTAEMRPTPAAAWEYFFMVDDHLAGPSLNHAEEEERHMENVNA 228
              GS R   +       T    P    AW+YFFMVD+ +AGPSL          ++VN 
Sbjct: 164 -LTGSQRGPPNGKVGPEETPPPTPN--VAWDYFFMVDN-MAGPSLEP-------QDDVN- 211

Query: 229 NDNVFSNKTTINSNIKNNISIDSNKNVDDFMKNDGDINVSVPEK-VEGKVV--------- 278
                 N+TT  S  K N+S +++ N D+       +    PEK VE  V          
Sbjct: 212 ----IRNETTSGS--KGNVSSENHNNADEI----DAVEPKTPEKAVEAAVEEVKESKKEK 261

Query: 279 --IEHASTAPAEF--VSKRAIATVSLMKVLNQIDDHFLKASQSAKDVSNMLEANRLHYHS 334
             IEH+ TAP +F  V   A+ +V+LM+VL +IDDHFLKAS++A++VS MLEA RLHYHS
Sbjct: 262 QHIEHSKTAPPDFRVVGTTAVPSVNLMEVLKEIDDHFLKASENAQEVSKMLEATRLHYHS 321

Query: 335 NFADNRALIDHSARVMRVITWNRSFRGLGLPHAEIERNEADLEDYETLAIVLDKMLAWEK 394
           NFADNR  +DHSARVMRVITWNRSFRG+  P+ E  ++E D EDYET A VLDK+LAWEK
Sbjct: 322 NFADNRGYVDHSARVMRVITWNRSFRGV--PNGEGGKDELDSEDYETHATVLDKLLAWEK 379

Query: 395 KLFEEVKRAELMKLEYQRKVAMLNKLKKRGSANEMLEKTKAAVAHLHTKYVVDMQTMDSS 454
           KL++EVK+ ELMKLEY++KV++LNK KKRG++ E LEKTKAAV+HLHT+Y+VDMQ+MDS+
Sbjct: 380 KLYDEVKQGELMKLEYRKKVSLLNKQKKRGASAETLEKTKAAVSHLHTRYIVDMQSMDST 439

Query: 455 VSEVNRLRDEELYPKLVALVNGMAKMWENMCIHHDSQLTIVSELKPLDIAHAVKETTQHH 514
           VSEVN +RD++LYPKLV LV+GMAKMW +M +HHDSQL IV++LK LD++HAVKETT HH
Sbjct: 440 VSEVNDIRDKQLYPKLVDLVDGMAKMWASMRVHHDSQLKIVTDLKSLDVSHAVKETTNHH 499

Query: 515 HERTEELFTVVQKWHTEFEKFVNHQKQFIQALTSWLKLNLIPIESSLKERVTSPPRAPNP 574
           H RT++L+ VVQ+WHT+F+K + HQKQ+IQ L SWLKLNLIPIESSLKE+++SPP+ PNP
Sbjct: 500 HARTKQLYNVVQEWHTQFDKLLTHQKQYIQILKSWLKLNLIPIESSLKEKISSPPKIPNP 559

Query: 575 PIQALLHSWHDYLEKLPDEIAKSAISSFAAVIKTIMLHQEEEMKLKEKCEETRKELLRKT 634
           PIQALL+SWHD+LEKLPDE+AKSAISSFAAVIKTI LHQEEEMKLKEKCEETRKE LRK 
Sbjct: 560 PIQALLYSWHDHLEKLPDEVAKSAISSFAAVIKTIELHQEEEMKLKEKCEETRKEFLRKN 619

Query: 635 HAYEEWHRKY--KKTHSEESEAERGDDANTRDPVLDRQIVIESLRKRLEEETEAFRRHCL 692
            A+++W++K+  ++  ++E+EA+RG+DAN+RD V +RQ  +ESL+KRLEEE E ++RHCL
Sbjct: 620 QAFDDWYQKHMQRRNPTDETEADRGEDANSRDLVSERQFAVESLKKRLEEEVETYQRHCL 679

Query: 693 QVREKSLGSLKLRLPDLFRAVSDFAHASFDAYEKLRSITQSQNSNGG 739
           QVREKSLGSLK+RLP+LFRA+SD+A+A  DAYEKLR++T SQ+S+ G
Sbjct: 680 QVREKSLGSLKIRLPELFRAMSDYAYACSDAYEKLRALTHSQSSSRG 726

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297812771|ref|XP_002874269.1| hypothetical protein ARALYDRAFT_910621 [Arabidopsis lyrata subsp. lyrata] gi|297320106|gb|EFH50528.1| hypothetical protein ARALYDRAFT_910621 [Arabidopsis lyrata subsp. lyrata]

 Score =  714 bits (1843), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 424/786 (53%), Positives = 553/786 (70%), Gaps = 66/786 (8%)

Query: 1   MGCAQSKIDNEEAVARSKDRRNLMKDAVSARNAFASGHSGYSFALKNVGAALSDFAHGES 60
           MGCAQS++DNEEAVAR K+RRN++K+AVSA  AFA+GH  Y+ ALKN GAALSD+ HGES
Sbjct: 1   MGCAQSRVDNEEAVARCKERRNVIKEAVSASKAFAAGHFAYAIALKNTGAALSDYGHGES 60

Query: 61  -------VDNQQHLEQP----LDPTPPPPPPLSSLDTLPPPPPPLPNFSPSPIKRAASLP 109
                  V +QQH E+     +DP  P PPP   ++ LPPPPPPLP FSPSPIKRA SLP
Sbjct: 61  DQKALDDVLDQQHYEKQSRNNVDPAAPQPPPPPPIENLPPPPPPLPKFSPSPIKRAISLP 120

Query: 110 --VISKNKKQTLDFDNVAITEDEEEEEDEEDENENDIEEEEEEEVEAEEDESITQKNKNK 167
              +   K QTLD   +   E++EEEE+E   +      +EEEE    E         N 
Sbjct: 121 SMAVRGRKVQTLDAMAIEEEEEDEEEEEEVKGSGRGTARKEEEEPRTPE---------NV 171

Query: 168 NKFGGSHRDMASASTSSPRTAEMRPTPAAAWEYFFMVDDHLAGPSLNHAEEEERHMENVN 227
            K  G  R      T++P      P  + AW+YFFMV++ + GP+L+     +R + N  
Sbjct: 172 GKINGRKR----LETTTPEIVSASPANSMAWDYFFMVEN-MPGPNLD-----DREIRNGY 221

Query: 228 ANDNVFSNKTTINSNIKNNISIDSNKNVDDF-------------------MKNDGDINVS 268
            N +        +   +      S K V++                     + + +  V 
Sbjct: 222 ENQSNHFQFNEEDDEEEEEERSGSRKVVEEMEPKTPEKVEEEEEDEEEDEEEEEEEEVVE 281

Query: 269 VPEKVEGKVVIEHASTAPAEFVSKRAIA---------TVSLMKVLNQIDDHFLKASQSAK 319
           V +K +GK  IEH++TAP EF  +RA+A         +V+LMK+L++IDD FLKAS+ A+
Sbjct: 282 VKKKKKGKAKIEHSNTAPPEF--RRAVAKTTSAAASSSVNLMKILDEIDDRFLKASECAQ 339

Query: 320 DVSNMLEANRLHYHSNFADNRALIDHSARVMRVITWNRSFRGLGLPHAEIERNEADLEDY 379
           +VS MLEA RLHYHSNFADNR  +DHSARVMRVITWN+S RG+   + E  +++ + +++
Sbjct: 340 EVSKMLEATRLHYHSNFADNRGYVDHSARVMRVITWNKSLRGI--SNGEGGKDDQESDEH 397

Query: 380 ETLAIVLDKMLAWEKKLFEEVKRAELMKLEYQRKVAMLNKLKKRGSANEMLEKTKAAVAH 439
           ET A VLDK+LAWEKKL++EVK+ ELMK+EYQ+KV++LN+ KKRG++ E +EKTKAAV+H
Sbjct: 398 ETHATVLDKLLAWEKKLYDEVKQGELMKIEYQKKVSLLNRHKKRGASAETVEKTKAAVSH 457

Query: 440 LHTKYVVDMQTMDSSVSEVNRLRDEELYPKLVALVNGMAKMWENMCIHHDSQLTIVSELK 499
           LHT+Y+VDMQ+MDS+VSEVNRLRD++LYP+LVALV GMAKMW NMCIHHD+QL IV ELK
Sbjct: 458 LHTRYIVDMQSMDSTVSEVNRLRDDQLYPRLVALVEGMAKMWTNMCIHHDTQLGIVGELK 517

Query: 500 PLDIAHAVKETTQHHHERTEELFTVVQKWHTEFEKFVNHQKQFIQALTSWLKLNLIPIES 559
            L+I+ +++ETT+ HH +T +  TV+++WH +F++ V HQKQ+I AL SWLKLNLIPIES
Sbjct: 518 SLEISTSLRETTKQHHHQTRQFCTVLEEWHVQFDRLVTHQKQYINALNSWLKLNLIPIES 577

Query: 560 SLKERVTSPPRAPNPPIQALLHSWHDYLEKLPDEIAKSAISSFAAVIKTIMLHQEEEMKL 619
           SL+E+V+SPPR   PPIQALLHSWHD LEKLPDE+AKSAI SFA VIKTI+LHQE+EMKL
Sbjct: 578 SLREKVSSPPRPQRPPIQALLHSWHDRLEKLPDEVAKSAIFSFAEVIKTILLHQEDEMKL 637

Query: 620 KEKCEETRKELLRKTHAYEEWHRKYKKTHSEESEAERGDDANT--RDPVLDRQIVIESLR 677
           KEKCEETR+E +RK   +E+W++K+ +      EAE GDD  T  RD V +R+IV+E+L+
Sbjct: 638 KEKCEETRREFIRKKQGFEDWYQKHLQKRGPTEEAEGGDDTTTSARDHVTERRIVVETLK 697

Query: 678 KRLEEETEAFRRHCLQVREKSLGSLKLRLPDLFRAVSDFAHASFDAYEKLRSITQSQNSN 737
           KRLEEE EA +RHC+QVREKSL SLK+RLP++FRA+SD+AHA  D+YEKLR I+QS  SN
Sbjct: 698 KRLEEEEEAHQRHCVQVREKSLNSLKIRLPEIFRALSDYAHACADSYEKLRIISQSHKSN 757

Query: 738 GGRVAS 743
           GG   S
Sbjct: 758 GGATES 763

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356518304|ref|XP_003527819.1| PREDICTED: uncharacterized protein LOC100807597 [Glycine max]

 Score =  659 bits (1699), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/570 (59%), Positives = 433/570 (75%), Gaps = 47/570 (8%)

Query: 193 TPAAAWEYFFMVDDHLAGPSLN-------------------HAEEEERHMENVNANDNVF 233
           +   AW+YFFMV++ + G SL+                   H ++ ER MENV   D V 
Sbjct: 165 SKGMAWDYFFMVEN-MPGRSLSAEDDNDDDDDDDNHIHNHNHNDDGERKMENV-VEDEV- 221

Query: 234 SNKTTINSNIKNNISIDSNKNVDDFMKNDGDINVSVPEKVEGKVVIEHASTAPAEFVSKR 293
                     K    +  ++NV    ++D  I+       E K  IEH+ TAPAEF  +R
Sbjct: 222 --------EPKTPDKVQEHENVSIHEEHDDGIS-------EAKKYIEHSKTAPAEF--RR 264

Query: 294 AIA---TVSLMKVLNQIDDHFLKASQSAKDVSNMLEANRLHYHSNFADNRALIDHSARVM 350
           AI    +V+LM++LN +DDHFLKAS+ A++V+ MLEA RLHYHSNFADNR  IDHSARVM
Sbjct: 265 AIKVVPSVTLMQILNVLDDHFLKASEGAQEVTKMLEATRLHYHSNFADNRGHIDHSARVM 324

Query: 351 RVITWNRSFRGLGLPHAEIERNEADLEDYETLAIVLDKMLAWEKKLFEEVKRAELMKLEY 410
           RVITWNRSFRG+   + +  +++ D E+YET A VLDK+LAWEKKL+EEVK+ ELMK EY
Sbjct: 325 RVITWNRSFRGVS--NGDAAKDDIDSEEYETHATVLDKLLAWEKKLYEEVKQGELMKFEY 382

Query: 411 QRKVAMLNKLKKRGSANEMLEKTKAAVAHLHTKYVVDMQTMDSSVSEVNRLRDEELYPKL 470
           QRKVA+LNK KKRG++ E LEKTKAAV+HLHT+Y+VDMQ+MDS+VSEVN +RD +LYPKL
Sbjct: 383 QRKVAILNKQKKRGASAESLEKTKAAVSHLHTRYIVDMQSMDSTVSEVNHIRDAQLYPKL 442

Query: 471 VALVNGMAKMWENMCIHHDSQLTIVSELKPLDIAHAVKETTQHHHERTEELFTVVQKWHT 530
           VALV  MA MWENMC+HHDSQL IV++LK LDI+ A KETT+HH++RT +L  V+ +WH 
Sbjct: 443 VALVIEMANMWENMCLHHDSQLKIVTDLKSLDISQAPKETTKHHYDRTVQLEKVILEWHL 502

Query: 531 EFEKFVNHQKQFIQALTSWLKLNLIPIESSLKERVTSPPRAPNPPIQALLHSWHDYLEKL 590
           +FEK V  QK +I+AL SWLKLNLIPIES+LKE+++SPP+A NPPIQALLH+WHDY++KL
Sbjct: 503 QFEKLVTQQKHYIKALNSWLKLNLIPIESNLKEKISSPPKAQNPPIQALLHAWHDYVDKL 562

Query: 591 PDEIAKSAISSFAAVIKTIMLHQEEEMKLKEKCEETRKELLRKTHAYEEWHRKY-KKTHS 649
           PDE+AKSAISSFAAVIKTI+L QEEEMKLKE+CEETRKE L+K  A+EEW++K+  +   
Sbjct: 563 PDELAKSAISSFAAVIKTILLQQEEEMKLKERCEETRKEYLKKKQAFEEWYQKHLMRRGP 622

Query: 650 EESEAERGDDANTRDPVLDRQIVIESLRKRLEEETEAFRRHCLQVREKSLGSLKLRLPDL 709
           +E+E ERG++ NT +PV +RQ V+ESL+KRLEEE E+ ++HC+QVREKSL SLK RLP+L
Sbjct: 623 DEAEHERGEEVNTNNPVSERQFVVESLQKRLEEEIESHQKHCIQVREKSLQSLKTRLPEL 682

Query: 710 FRAVSDFAHASFDAYEKLRSITQSQNSNGG 739
           FRA+SD+AHA  +AYEKL+ ITQS+   GG
Sbjct: 683 FRALSDYAHACAEAYEKLKLITQSR--GGG 710

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225430073|ref|XP_002281782.1| PREDICTED: uncharacterized protein LOC100259547 [Vitis vinifera]

 Score =  657 bits (1696), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/582 (57%), Positives = 438/582 (75%), Gaps = 24/582 (4%)

Query: 167 KNKFGGSHRDMASASTSSPRTAEMRPTP-------AAAWEYFFMVDDHLAGPSLNHAEEE 219
           + + GG  R+      + PRT  M   P         +W+YFFMV++ +AG  L   EE+
Sbjct: 137 RRRNGGGARE---EEPTPPRTPAMNAVPPPPPDAKGMSWDYFFMVEN-MAGTMLT--EED 190

Query: 220 ERHMENVNANDNVFSNKTTINSNIKNNISIDSNKNVDDFMKNDGDINVSVPEKVEGKVVI 279
           E   E       VF     +  +          K      + + +      E V+    +
Sbjct: 191 EIKGEKNEDEGEVFHEMGNVGGDGGEESGGVEPKTPQKTAEKEDE------ELVKKAKQL 244

Query: 280 EHASTAPAEFVSKRAI-ATVSLMKVLNQIDDHFLKASQSAKDVSNMLEANRLHYHSNFAD 338
            HA+TAP   V +  I  +++LM++LN IDDHFLKAS+SA++V+ MLEANR+HYHSNFAD
Sbjct: 245 THANTAPLPEVRRGVIEPSINLMQILNVIDDHFLKASESAQEVTKMLEANRMHYHSNFAD 304

Query: 339 NRALIDHSARVMRVITWNRSFRGLGLPHAEIERNEADLEDYETLAIVLDKMLAWEKKLFE 398
           N   IDHSARVMRVITWN+S RG+   +A+ +++  D E+YET A VLDK+LAWEKKL++
Sbjct: 305 NGGHIDHSARVMRVITWNKSIRGMH--NADDKKDVFDAEEYETHATVLDKLLAWEKKLYD 362

Query: 399 EVKRAELMKLEYQRKVAMLNKLKKRGSANEMLEKTKAAVAHLHTKYVVDMQTMDSSVSEV 458
           EVK  ELMK EYQRKVA+LNK KKR ++ E LEKTKAAV+HLHT+Y+VDMQ+MDS+VSEV
Sbjct: 363 EVKAGELMKHEYQRKVALLNKQKKRSASTESLEKTKAAVSHLHTRYIVDMQSMDSTVSEV 422

Query: 459 NRLRDEELYPKLVALVNGMAKMWENMCIHHDSQLTIVSELKPLDIAHAVKETTQHHHERT 518
           N +RD++LYPKLVALV+GMAKMW +MC+ H+SQL +V++LK +DI+ A KET++HHHERT
Sbjct: 423 NHIRDDQLYPKLVALVDGMAKMWNDMCMQHNSQLKMVTDLKSIDISQAPKETSKHHHERT 482

Query: 519 EELFTVVQKWHTEFEKFVNHQKQFIQALTSWLKLNLIPIESSLKERVTSPPRAPNPPIQA 578
            +L+  +Q WH++FEK V H+KQ+IQAL SWLKLNLIPIESSLKE+++SPPR  +PPIQA
Sbjct: 483 IQLWNEIQGWHSQFEKLVTHEKQYIQALNSWLKLNLIPIESSLKEKISSPPRPQHPPIQA 542

Query: 579 LLHSWHDYLEKLPDEIAKSAISSFAAVIKTIMLHQEEEMKLKEKCEETRKELLRKTHAYE 638
           LLHSWHD LEKLP E+AKSAISSFAAVIKTI+LHQEEEMKLKEKCEET+KE  RK  A++
Sbjct: 543 LLHSWHDSLEKLPHELAKSAISSFAAVIKTIILHQEEEMKLKEKCEETQKEYSRKHQAFQ 602

Query: 639 EWHRKY--KKTHSEESEAERGDDANTRDPVLDRQIVIESLRKRLEEETEAFRRHCLQVRE 696
           +W++KY  ++T  +E++ E+GD+AN +DP+ ++Q V+ESL+K+LEEE EA +RHC+QVRE
Sbjct: 603 DWYQKYMQRRTPPDETDPEKGDEANPKDPISEKQFVVESLKKKLEEEVEAHQRHCVQVRE 662

Query: 697 KSLGSLKLRLPDLFRAVSDFAHASFDAYEKLRSITQSQNSNG 738
           KSLGSLKLRLP+LFRA++D+ HA  DAY++L++ITQSQ+ NG
Sbjct: 663 KSLGSLKLRLPELFRALTDYTHACSDAYQRLKAITQSQSVNG 704

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224141803|ref|XP_002324252.1| predicted protein [Populus trichocarpa] gi|222865686|gb|EEF02817.1| predicted protein [Populus trichocarpa]

 Score =  636 bits (1640), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 304/419 (72%), Positives = 365/419 (87%), Gaps = 5/419 (1%)

Query: 324 MLEANRLHYHSNFADNRALIDHSARVMRVITWNRSFRGLGLPHAEIERNEADLEDYETLA 383
           MLEA RLHYHSNFADNR  IDHSARVMRVITWNRSF+G+  P AE   +E D EDYET A
Sbjct: 1   MLEATRLHYHSNFADNRGHIDHSARVMRVITWNRSFKGV--PSAEGGEDELDSEDYETHA 58

Query: 384 IVLDKMLAWEKKLFEEVKRAELMKLEYQRKVAMLNKLKKRGSANEMLEKTKAAVAHLHTK 443
            VLDK+LAWEKKL++EVK+ ELMKLEY+RKVA+LNK KKRG++ E LEKTKAAV+HLHT+
Sbjct: 59  TVLDKLLAWEKKLYDEVKQGELMKLEYKRKVALLNKQKKRGASAESLEKTKAAVSHLHTR 118

Query: 444 YVVDMQTMDSSVSEVNRLRDEELYPKLVALVNGMAKMWENMCIHHDSQLTIVSELKPLDI 503
           Y+VDMQ+MDS+VSEVN++RD++LYPKLV LV+GMAKMW +MC+HHDSQL IV+ LK LD+
Sbjct: 119 YIVDMQSMDSTVSEVNQIRDQQLYPKLVDLVDGMAKMWASMCMHHDSQLKIVTNLKSLDV 178

Query: 504 AHAVKETTQHHHERTEELFTVVQKWHTEFEKFVNHQKQFIQALTSWLKLNLIPIESSLKE 563
            HA+KETT+HHHERT +L  VVQ W + FEK V HQKQ+I  LTSWLKLNLIPIESSLKE
Sbjct: 179 NHAIKETTKHHHERTIQLLKVVQGWLSHFEKLVTHQKQYIHTLTSWLKLNLIPIESSLKE 238

Query: 564 RVTSPPRAPNPPIQALLHSWHDYLEKLPDEIAKSAISSFAAVIKTIMLHQEEEMKLKEKC 623
           +++SPPRA NPPIQALLHSWHDYLEKLPDE+AKSAISSFAAV++TI+ HQEEEMKLKEKC
Sbjct: 239 KISSPPRAQNPPIQALLHSWHDYLEKLPDELAKSAISSFAAVVETIVHHQEEEMKLKEKC 298

Query: 624 EETRKELLRKTHAYEEWHRKY--KKTHSEESEAERGDDANTRDPVLDRQIVIESLRKRLE 681
           EETR+E +RK  A+EEW++KY  ++T ++E++A+RG+DAN  +PV +RQ V+ESL+KRLE
Sbjct: 299 EETRREFMRKNQAFEEWYQKYMQRRTPTDETDADRGEDANP-NPVSERQFVVESLKKRLE 357

Query: 682 EETEAFRRHCLQVREKSLGSLKLRLPDLFRAVSDFAHASFDAYEKLRSITQSQNSNGGR 740
           EE EA  +HCLQVREKS+GSLK+RLP+LFRA+SD+AHA  DAYEKLRSITQ Q S+  R
Sbjct: 358 EEIEAHGKHCLQVREKSVGSLKIRLPELFRAMSDYAHACSDAYEKLRSITQLQKSDRNR 416

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357466621|ref|XP_003603595.1| hypothetical protein MTR_3g109450 [Medicago truncatula] gi|355492643|gb|AES73846.1| hypothetical protein MTR_3g109450 [Medicago truncatula]

 Score =  631 bits (1627), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 332/549 (60%), Positives = 419/549 (76%), Gaps = 15/549 (2%)

Query: 197 AWEYFFMVDDHLAGPSLNHAEEEERHMENVNANDNVFSNKTTINSNIKNNISIDSNKNVD 256
           AW+YFFM  D++   SLN  +E E   E     +NV  N   +   I+          VD
Sbjct: 176 AWDYFFMDMDNMGRGSLNEEDEIEN-EEGEIEGENVDVNGGHVEDEIEPKTP--EKVEVD 232

Query: 257 DFMKNDGDINVSVPEKVEGKVVIEHASTAPAEFVSKRAIA---TVSLMKVLNQIDDHFLK 313
            + K  G  +    + +     IEH+ TAPAEF  +RAI    +V+LM++L+ +DDHFLK
Sbjct: 233 VYNKEHGHEHEHEDDVIREATHIEHSKTAPAEF--RRAIKVVPSVTLMQILSSLDDHFLK 290

Query: 314 ASQSAKDVSNMLEANRLHYHSNFADNRALIDHSARVMRVITWNRSFRGLGLPHAEIERNE 373
           AS++A+DVS MLEA RLHYHSNFAD R  IDHSARVM+VITWNRSF+G+   + E  +++
Sbjct: 291 ASETAQDVSKMLEATRLHYHSNFADGRGHIDHSARVMQVITWNRSFKGVS--NGEGAKDD 348

Query: 374 ADLEDYETLAIVLDKMLAWEKKLFEEVKRAELMKLEYQRKVAMLNKLKKRGSANEMLEKT 433
            D ED ET A VLDK+LAWEKKL+EEVK+ ELMK EYQRKVA+LNK KKRG++ E L KT
Sbjct: 349 FDSEDKETHATVLDKLLAWEKKLYEEVKQGELMKFEYQRKVAILNKQKKRGASVESLGKT 408

Query: 434 KAAVAHLHTKYVVDMQTMDSSVSEVNRLRDEELYPKLVALVNGMAKMWENMCIHHDSQLT 493
           KAAV+HLHT+Y+VDMQ+MDS+VSEV+ +RD +LYPKLVALV GMA MWENM +HHDSQL 
Sbjct: 409 KAAVSHLHTRYIVDMQSMDSTVSEVDHIRDSQLYPKLVALVIGMANMWENMFMHHDSQLK 468

Query: 494 IVSELKPLDIAHAVKETTQHHHERTEELFTVVQKWHTEFEKFVNHQKQFIQALTSWLKLN 553
           IV++LK LDI+   KETT+HH++RT +L+ V+Q+W ++FEK V  QK +IQAL SWLKLN
Sbjct: 469 IVTDLKSLDISQDHKETTKHHYDRTVQLWNVIQEWESQFEKLVTQQKHYIQALFSWLKLN 528

Query: 554 LIPIESSLKERVTSPPRAPNPPIQALLHSWHDYLEKLPDEIAKSAISSFAAVIKTIMLHQ 613
           LIPIES+LKE+++SPPRA NPPIQALL++WHDYL+KLPDE+AKSAI+SFAAVIKTI+L Q
Sbjct: 529 LIPIESNLKEKISSPPRAQNPPIQALLYAWHDYLDKLPDELAKSAITSFAAVIKTIILQQ 588

Query: 614 EEEMKLKEKCEETRKELLRKTHAYEEWHRKYKKTHSEESEAERGDDANTRDPVLDRQIVI 673
           EEEMKLKEKCEETRKE LRK  A+EEW++K+ +    + + ER DD NT +PV ++Q V+
Sbjct: 589 EEEMKLKEKCEETRKEFLRKNQAFEEWYQKHLQRRGPD-DPER-DDVNTNNPVSEKQFVV 646

Query: 674 ESLRKRLEEETEAFRRHCLQVREKSLGSLKLRLPDLFRAVSDFAHASFDAYEKLRSITQS 733
           ESL+KRLEEETE+ ++ C+QVREKSL SLK RLP+LFRA+SD+  A  DAYEKL+SI  S
Sbjct: 647 ESLKKRLEEETESHKKLCVQVREKSLQSLKTRLPELFRALSDYTQACSDAYEKLKSIAHS 706

Query: 734 QNSNGGRVA 742
           Q   GG  A
Sbjct: 707 Q---GGGAA 712

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15239473|ref|NP_197941.1| uncharacterized protein [Arabidopsis thaliana] gi|20259508|gb|AAM13874.1| unknown protein [Arabidopsis thaliana] gi|22136982|gb|AAM91720.1| unknown protein [Arabidopsis thaliana] gi|332006087|gb|AED93470.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  627 bits (1618), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 312/479 (65%), Positives = 396/479 (82%), Gaps = 14/479 (2%)

Query: 275 GKVVIEHASTAPAEFVSKRAIA--------TVSLMKVLNQIDDHFLKASQSAKDVSNMLE 326
           GK  IEH+STAP EF  +RA+A        +V+LMK+L++IDD FLKAS+ A++VS MLE
Sbjct: 300 GKAKIEHSSTAPPEF--RRAVAKTSAAASSSVNLMKILDEIDDRFLKASECAQEVSKMLE 357

Query: 327 ANRLHYHSNFADNRALIDHSARVMRVITWNRSFRGLGLPHAEIERNEADLEDYETLAIVL 386
           A RLHYHSNFADNR  +DHSARVMRVITWN+S RG+   + E  +++ + +++ET A VL
Sbjct: 358 ATRLHYHSNFADNRGYVDHSARVMRVITWNKSLRGI--SNGEGGKDDQESDEHETHATVL 415

Query: 387 DKMLAWEKKLFEEVKRAELMKLEYQRKVAMLNKLKKRGSANEMLEKTKAAVAHLHTKYVV 446
           DK+LAWEKKL++EVK+ ELMK+EYQ+KV++LN+ KKRG++ E +EKTKAAV+HLHT+Y+V
Sbjct: 416 DKLLAWEKKLYDEVKQGELMKIEYQKKVSLLNRHKKRGASAETVEKTKAAVSHLHTRYIV 475

Query: 447 DMQTMDSSVSEVNRLRDEELYPKLVALVNGMAKMWENMCIHHDSQLTIVSELKPLDIAHA 506
           DMQ+MDS+VSEVNRLRD++LYP+LVALV GMAKMW NMCIHHD+QL IV ELK L+I+ +
Sbjct: 476 DMQSMDSTVSEVNRLRDDQLYPRLVALVEGMAKMWTNMCIHHDTQLGIVGELKALEISTS 535

Query: 507 VKETTQHHHERTEELFTVVQKWHTEFEKFVNHQKQFIQALTSWLKLNLIPIESSLKERVT 566
           +KETT+ HH +T +  TV+++WH +F+  V HQKQ+I +L +WLKLNLIPIESSLKE+V+
Sbjct: 536 LKETTKQHHHQTRQFCTVLEEWHVQFDTLVTHQKQYINSLNNWLKLNLIPIESSLKEKVS 595

Query: 567 SPPRAPNPPIQALLHSWHDYLEKLPDEIAKSAISSFAAVIKTIMLHQEEEMKLKEKCEET 626
           SPPR   PPIQALLHSWHD LEKLPDE+AKSAISSFAAVIKTI+LHQEEEMKLKEKCEET
Sbjct: 596 SPPRPQRPPIQALLHSWHDRLEKLPDEVAKSAISSFAAVIKTILLHQEEEMKLKEKCEET 655

Query: 627 RKELLRKTHAYEEWHRKYKKTHSEESEAERGDDANT--RDPVLDRQIVIESLRKRLEEET 684
           R+E +RK   +E+W++K+ +      EAE GDDA T  RD V +R+I +E+L+KRLEEE 
Sbjct: 656 RREFIRKKQGFEDWYQKHLQKRGPTEEAEGGDDATTSSRDHVTERRIAVETLKKRLEEEE 715

Query: 685 EAFRRHCLQVREKSLGSLKLRLPDLFRAVSDFAHASFDAYEKLRSITQSQNSNGGRVAS 743
           EA +RHC+QVREKSL SLK+RLP++FRA+SD+AHA  D+YEKLR I+QSQ SNGG   S
Sbjct: 716 EAHQRHCVQVREKSLNSLKIRLPEIFRALSDYAHACADSYEKLRIISQSQKSNGGATES 774

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449531005|ref|XP_004172478.1| PREDICTED: uncharacterized protein LOC101231290 [Cucumis sativus]

 Score =  618 bits (1594), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 369/739 (49%), Positives = 481/739 (65%), Gaps = 51/739 (6%)

Query: 1   MGCAQSKIDNEEAVARSKDRRNLMKDAVSARNAFASGHSGYSFALKNVGAALSDFAHGES 60
           MGC+QSKI+NEEA+AR KDR+  MKDAV+ARNAFA+GHS Y  +LKN GA+LSD+AHGE 
Sbjct: 1   MGCSQSKIENEEAIARCKDRKIHMKDAVAARNAFAAGHSAYVMSLKNTGASLSDYAHGE- 59

Query: 61  VDNQQHLEQPLDPTPPPPPPLSSLDTLPPPPPPLPNFSPSPIKRAASLPVISKNKKQTLD 120
           V N Q         P      SS + L PPPPP+ +F PSP+ RAAS+P ++  K    D
Sbjct: 60  VQNPQLDNGSAQSNPNIDSVASSYEPLVPPPPPILDF-PSPLHRAASMPEMNILKS---D 115

Query: 121 FDNVA-ITEDEEEEEDEEDENENDIEEEEEEEVEAEEDESITQKNKNKNKFGGSHRDMAS 179
              V  I E+E+E E + + +   +     ++       S     +  ++  G    +  
Sbjct: 116 LKPVGPIIEEEDENESDNEGSIGSLRRRRSKKGSGGGGSSRIGNKELDDELEGPPPPVPP 175

Query: 180 ASTSSPRTAEMRPTPAA-----AWEYFFMVDDHLAGPSLNHAEEEERHMENVNANDNVFS 234
             +++P     RP P A      ++YFF +D+ + GPSL+ AEEE  H     A      
Sbjct: 176 PPSNTPPPNVNRPLPRAQQQDSTYDYFFGLDN-MPGPSLSEAEEEIEHNHGATA---AAC 231

Query: 235 NKTTINSNIKNNISIDSNKNVDDFMKNDGDINVSVPEKVEGKVVIEHASTAPAEFVSKRA 294
               I+ NIK         ++D    ND   N                            
Sbjct: 232 CGRIISHNIKELEEGGGVSSMDGRRMNDAKFN---------------------------- 263

Query: 295 IATVSLMKVLNQIDDHFLKASQSAKDVSNMLEANRLHYHSNFADNRALIDHSARVMRVIT 354
                L+++   +DDHFLKAS+SA +VS MLEA RLHYHSNFAD R  IDHSARVMRVIT
Sbjct: 264 -----LLQIFVNLDDHFLKASESAHEVSKMLEATRLHYHSNFADGRGHIDHSARVMRVIT 318

Query: 355 WNRSFRGLGLPHAEIERNEADLEDYETLAIVLDKMLAWEKKLFEEVKRAELMKLEYQRKV 414
           WNRSF+GL     +  R++   ED ET A VLDK+LAWEKKL++EVK  E+MK EYQRKV
Sbjct: 319 WNRSFKGLS--SMDNGRDDFYAEDQETHATVLDKLLAWEKKLYDEVKAGEIMKFEYQRKV 376

Query: 415 AMLNKLKKRGSANEMLEKTKAAVAHLHTKYVVDMQTMDSSVSEVNRLRDEELYPKLVALV 474
           A LN+LKKRGS  + LEK KAAV+HLHT+Y+VDMQ++DS+VSE+NRLRDE+LYPKLV LV
Sbjct: 377 ASLNRLKKRGSNPDALEKAKAAVSHLHTRYIVDMQSLDSTVSEINRLRDEQLYPKLVQLV 436

Query: 475 NGMAKMWENMCIHHDSQLTIVSELKPLDIAHAVKETTQHHHERTEELFTVVQKWHTEFEK 534
           +GM  MW+ M +HH+ QL IV+ L+ LD++ + KET+ HHHERT +L  VV++WH++FEK
Sbjct: 437 HGMMLMWDTMRMHHEEQLKIVNALRYLDLSQSPKETSLHHHERTVQLCNVVREWHSQFEK 496

Query: 535 FVNHQKQFIQALTSWLKLNLIPIESSLKERVTSPPRAPNPPIQALLHSWHDYLEKLPDEI 594
               QK +I+AL SWLKLNLIPIESSLKE+V+SPPRA NPPIQ LL +WHD LEKLPDE 
Sbjct: 497 LAYRQKDYIKALNSWLKLNLIPIESSLKEKVSSPPRAQNPPIQRLLTAWHDQLEKLPDEH 556

Query: 595 AKSAISSFAAVIKTIMLHQEEEMKLKEKCEETRKELLRKTHAYEEWHRKYKKTH-SEESE 653
            ++AISSF+AVI TIML QEEEMKLK +C+ET KEL+RK   +++WH KY++    +E +
Sbjct: 557 LRTAISSFSAVISTIMLQQEEEMKLKLRCDETEKELMRKQRQFDDWHYKYQQRRMPDELD 616

Query: 654 AERGDDANTRDPVLDRQIVIESLRKRLEEETEAFRRHCLQVREKSLGSLKLRLPDLFRAV 713
            E+ ++ +    V +R +V+ESL+KRLEEE E   + CL VREKSL SLK +LP+LFRA+
Sbjct: 617 PEKSEENSQDAAVTERLVVVESLKKRLEEEKETHAKQCLHVREKSLVSLKNQLPELFRAL 676

Query: 714 SDFAHASFDAYEKLRSITQ 732
           S+F+ A  D Y+ LR I Q
Sbjct: 677 SEFSSAGSDMYKNLRLICQ 695

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357454977|ref|XP_003597769.1| hypothetical protein MTR_2g102050 [Medicago truncatula] gi|355486817|gb|AES68020.1| hypothetical protein MTR_2g102050 [Medicago truncatula]

 Score =  617 bits (1592), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 349/772 (45%), Positives = 487/772 (63%), Gaps = 47/772 (6%)

Query: 1   MGCAQSKIDNEEAVARSKDRRNLMKDAVSARNAFASGHSGYSFALKNVGAALSDFAHGES 60
           MGC QSKI+NEE++ R K+R+  MK+AVS+RNAFA+ H+ YS +LKN GAAL DF+HGE 
Sbjct: 1   MGCNQSKIENEESILRCKERKRYMKEAVSSRNAFAAAHTAYSTSLKNTGAALGDFSHGEV 60

Query: 61  VDNQQHLEQPLDPTPPPPPPLSSLDTLPPPPPPLPNFSPSPIKRAASLPVISKNKKQTLD 120
            + Q          P   PP    D   PPPP   +FSP+ ++RAAS+P I  NK     
Sbjct: 61  ANPQSTTIGDNSYIPVLQPPQKPFDIPLPPPPLPEDFSPA-LQRAASMPEIKINKPDPRP 119

Query: 121 FDNVAIT-----------------EDEEEEEDEEDENENDIEEEEEEEVEAEEDES---I 160
             N  +                   +            N     E+EE+EA        +
Sbjct: 120 MPNPILEEEDDEELENEGSLRKRRSNRNVGVGVVVGGVNSNRRLEDEEIEAPPPMPPPLV 179

Query: 161 TQKNKNKNKFGGSHRDMASASTSSPRTAEMRPTPAAAWEYFFMVDDHLAGPSLNHAEEEE 220
            Q   + +  G +++     + S+P+        +AAWEYFF   +++AG SLN   EE 
Sbjct: 180 KQPPISSDHLGNNNQSHHHHTMSNPQQN------SAAWEYFFPSMENIAGTSLN---EEG 230

Query: 221 RHMENVNAN--------DNVFSNKTTINSNIKNNISIDSNKNVDDFMKNDGDINVSVPEK 272
            H   V  N          V   +  + + +   + I  +    D +    ++  S  E 
Sbjct: 231 EHGGGVTFNRMQHTAMPSRVGIVEEPVTARMGVGVEIPGHIREPDHIPEHEEVMESPMES 290

Query: 273 -VEGKVVIEHASTAPAEFVSKRAIA---TVSLMKVLNQIDDHFLKASQSAKDVSNMLEAN 328
            +   + ++     P    +KR +    +V+L+++   +DDHFLKAS+SA +VS MLEA 
Sbjct: 291 PLPSGLKMKQMPVTPPSMEAKRIVKHNNSVNLVQIFTDLDDHFLKASESAHEVSKMLEAT 350

Query: 329 RLHYHSNFADNRALIDHSARVMRVITWNRSFRGLGLPHAEIERNEADLEDYETLAIVLDK 388
           RLHYHSNFADNR  IDHSARVMRVITWNRSF+G+  P+ +  +++ D +++ET A +LDK
Sbjct: 351 RLHYHSNFADNRGHIDHSARVMRVITWNRSFKGI--PNLDDGKDDFDSDEHETHATILDK 408

Query: 389 MLAWEKKLFEEVKRAELMKLEYQRKVAMLNKLKKRGSANEMLEKTKAAVAHLHTKYVVDM 448
           +LAWEKKL++EVK  ELMK +YQRKVA LN+LKKRG+ +E LEK KAAV+ LHT+Y+VDM
Sbjct: 409 LLAWEKKLYDEVKAGELMKFDYQRKVASLNRLKKRGNNSEALEKAKAAVSQLHTRYIVDM 468

Query: 449 QTMDSSVSEVNRLRDEELYPKLVALVNGMAKMWENMCIHHDSQLTIVSELKPLDIAHAVK 508
           Q++DS+VSE+NRLRDE+LYP+LV LV  MA MW+ M   H+ Q   V+ L+ LD + + K
Sbjct: 469 QSLDSTVSEINRLRDEQLYPRLVKLVEEMAAMWKKMLSEHEKQSETVTLLRSLDPSQSPK 528

Query: 509 ETTQHHHERTEELFTVVQKWHTEFEKFVNHQKQFIQALTSWLKLNLIPIESSLKERVTSP 568
           +T++HHHERT +L  VVQ+WH +FE  VN+QK +I++L++WLKLNLIPIESSLKE+V+SP
Sbjct: 529 QTSEHHHERTYQLLVVVQQWHLQFEMLVNNQKGYIKSLSNWLKLNLIPIESSLKEKVSSP 588

Query: 569 PRAPNPPIQALLHSWHDYLEKLPDEIAKSAISSFAAVIKTIMLHQEEEMKLKEKCEETRK 628
           PR  +PP+Q LLH+WHD LEK+PD++A++AI +FAAVI TI   QE+EM LK KCEE+RK
Sbjct: 589 PRVRSPPVQGLLHAWHDRLEKIPDDLARTAIGNFAAVIDTIFNQQEDEMVLKRKCEESRK 648

Query: 629 ELLRKTHAYEEWHRKYKKTHSEESEAERGDDANTRDPVL-DRQIVIESLRKRLEEETEAF 687
           EL RKT  +E+W+ KY +    E      +DAN  D V+ ++Q ++E +RKRLE E   +
Sbjct: 649 ELSRKTRQFEDWYHKYMQRKMPEEVDPEAEDANAPDEVVTEKQFLVEQVRKRLEHEEAEY 708

Query: 688 RRHCLQVREKSLGSLKLRLPDLFRAVSDFAHASFDAYEKLRSITQ--SQNSN 737
            + C+QVR+K+LGSLK R+P+LFRA+ DF+      Y +L SI+Q   QNS+
Sbjct: 709 EKQCIQVRQKTLGSLKNRMPELFRAMCDFSLECSKMYMELGSISQHLGQNSS 760

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449465280|ref|XP_004150356.1| PREDICTED: uncharacterized protein LOC101203914 [Cucumis sativus]

 Score =  615 bits (1587), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 368/739 (49%), Positives = 487/739 (65%), Gaps = 25/739 (3%)

Query: 1   MGCAQSKIDNEEAVARSKDRRNLMKDAVSARNAFASGHSGYSFALKNVGAALSDFAHGES 60
           MGC+QSKI+NEEA+AR KDR+  MKDAV+ARNAFA+GHS Y  +LKN GA+LSD+AHGE 
Sbjct: 1   MGCSQSKIENEEAIARCKDRKIHMKDAVAARNAFAAGHSAYVMSLKNTGASLSDYAHGE- 59

Query: 61  VDNQQHLEQPLDPTPPPPPPLSSLDTLPPPPPPLPNFSPSPIKRAASLPVISKNKKQTLD 120
           V N Q         P      SS + L PPPPP+ +F PSP+ RAAS+P ++  K    D
Sbjct: 60  VQNPQLDNGSAQSNPNIDSVASSYEPLVPPPPPILDF-PSPLHRAASMPEMNILKS---D 115

Query: 121 FDNVA-ITEDEEEEEDEEDENENDIEEEEEEEVEAEEDESITQKNKNKNKFGGSHRDMAS 179
              V  I E+E+E E + + +   +     ++       S     +  ++  G    +  
Sbjct: 116 LKPVGPIIEEEDENESDNEGSIGSLRRRRSKKGSGGGGSSRIGNKELDDELEGPPPPVPP 175

Query: 180 ASTSSPRTAEMRPTPAA-----AWEYFFMVDDHLAGPSLNHAEEEERHMENVNANDNVFS 234
             +++P     RP P A      ++YFF +D+ + GPSL+ AEEE  H    + +     
Sbjct: 176 PPSNTPPPNVNRPLPRAQQQDSTYDYFFGLDN-MPGPSLSEAEEEIEH-NQFDKSPERED 233

Query: 235 NKTTINSNIKNNISIDSNKNVDDFMKNDGDINVSVPEKVEGKVVIEHASTAPAEFVSKRA 294
           N    N    +  +          +     I     +KV G   ++      A+F     
Sbjct: 234 NDEMENQGGGSKQAEAVEPPPPPAVAESSAITSKSLKKVGGVSSMDGRRMNDAKF----- 288

Query: 295 IATVSLMKVLNQIDDHFLKASQSAKDVSNMLEANRLHYHSNFADNRALIDHSARVMRVIT 354
               +L+++   +DDHFLKAS+SA +VS MLEA RLHYHSNFAD R  IDHSARVMRVIT
Sbjct: 289 ----NLLQIFVNLDDHFLKASESAHEVSKMLEATRLHYHSNFADGRGHIDHSARVMRVIT 344

Query: 355 WNRSFRGLGLPHAEIERNEADLEDYETLAIVLDKMLAWEKKLFEEVKRAELMKLEYQRKV 414
           WNRSF+GL     +  R++   ED ET A VLDK+LAWEKKL++EVK  E+MK EYQRKV
Sbjct: 345 WNRSFKGLS--SMDNGRDDFYAEDQETHATVLDKLLAWEKKLYDEVKAGEIMKFEYQRKV 402

Query: 415 AMLNKLKKRGSANEMLEKTKAAVAHLHTKYVVDMQTMDSSVSEVNRLRDEELYPKLVALV 474
           A LN+LKKRGS  + LEK KAAV+HLHT+Y+VDMQ++DS+VSE+NRLRDE+LYPKLV LV
Sbjct: 403 ASLNRLKKRGSNPDALEKAKAAVSHLHTRYIVDMQSLDSTVSEINRLRDEQLYPKLVQLV 462

Query: 475 NGMAKMWENMCIHHDSQLTIVSELKPLDIAHAVKETTQHHHERTEELFTVVQKWHTEFEK 534
           +GM  MW+ M +HH+ QL IV+ L+ LD++ + KET+ HHHERT +L  VV++WH++FEK
Sbjct: 463 HGMMLMWDTMRMHHEEQLKIVNALRYLDLSQSPKETSLHHHERTVQLCNVVREWHSQFEK 522

Query: 535 FVNHQKQFIQALTSWLKLNLIPIESSLKERVTSPPRAPNPPIQALLHSWHDYLEKLPDEI 594
               QK +I+AL SWLKLNLIPIESSLKE+V+SPPRA NPPIQ LL +WHD LEKLPDE 
Sbjct: 523 LAYRQKDYIKALNSWLKLNLIPIESSLKEKVSSPPRAQNPPIQRLLTAWHDQLEKLPDEH 582

Query: 595 AKSAISSFAAVIKTIMLHQEEEMKLKEKCEETRKELLRKTHAYEEWHRKYKKTH-SEESE 653
            ++AISSF+AVI TIML QEEEMKLK +C+ET KEL+RK   +++WH KY++    +E +
Sbjct: 583 LRTAISSFSAVISTIMLQQEEEMKLKLRCDETEKELMRKQRQFDDWHYKYQQRRMPDELD 642

Query: 654 AERGDDANTRDPVLDRQIVIESLRKRLEEETEAFRRHCLQVREKSLGSLKLRLPDLFRAV 713
            E+ ++ +    V +R +V+ESL+KRLEEE E   + CL VREKSL SLK +LP+LFRA+
Sbjct: 643 PEKSEENSQDAAVTERLVVVESLKKRLEEEKETHAKQCLHVREKSLVSLKNQLPELFRAL 702

Query: 714 SDFAHASFDAYEKLRSITQ 732
           S+F+ A  D Y+ LR I Q
Sbjct: 703 SEFSSAGSDMYKNLRLICQ 721

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	743
TAIR|locus:2179504	775	AT5G25590 [Arabidopsis thalian	0.648	0.621	0.603	1.9e-189
TAIR|locus:2018174	798	AT1G52320 "AT1G52320" [Arabido	0.605	0.563	0.551	4.6e-150
TAIR|locus:2081922	796	AT3G60320 "AT3G60320" [Arabido	0.581	0.542	0.284	5.2e-63
TAIR|locus:2036900	953	AT1G21740 [Arabidopsis thalian	0.636	0.496	0.233	1.2e-38
TAIR|locus:2204740	879	AT1G77500 [Arabidopsis thalian	0.407	0.344	0.285	3.1e-36
TAIR|locus:2135292	657	AT4G39790 "AT4G39790" [Arabido	0.341	0.386	0.301	9.9e-35
TAIR|locus:2059284	743	AT2G27090 [Arabidopsis thalian	0.308	0.308	0.303	8.9e-32
TAIR|locus:2030382	614	AT1G20530 "AT1G20530" [Arabido	0.446	0.540	0.232	1.8e-31
TAIR|locus:2126510	725	AT4G30130 "AT4G30130" [Arabido	0.417	0.427	0.270	2.4e-31
TAIR|locus:2059057	814	AT2G19090 "AT2G19090" [Arabido	0.426	0.389	0.256	2.5e-31

TAIR|locus:2179504 AT5G25590 [Arabidopsis thaliana (taxid:3702)]

 Score = 1537 (546.1 bits), Expect = 1.9e-189, Sum P(4) = 1.9e-189
 Identities = 297/492 (60%), Positives = 384/492 (78%)

Query:   260 KNDGDINVSVPEKVEGKVVIEHASTAPAEF---VSKRAIA---TVSLMKVLNQIDDHFLK 313
             + + ++ V V +K +GK  IEH+STAP EF   V+K + A   +V+LMK+L++IDD FLK
Sbjct:   285 EEEEEVVVEVKKKKKGKAKIEHSSTAPPEFRRAVAKTSAAASSSVNLMKILDEIDDRFLK 344

Query:   314 ASQSAKDVSNMLEANRLHYHSNFADNRALIDHSARVMRVITWNRSFRGLGLPHAEIERNE 373
             AS+ A++VS MLEA RLHYHSNFADNR  +DHSARVMRVITWN+S RG+   + E  +++
Sbjct:   345 ASECAQEVSKMLEATRLHYHSNFADNRGYVDHSARVMRVITWNKSLRGIS--NGEGGKDD 402

Query:   374 ADLEDYETLAIVLDKMLAWEKKLFEEVKRAELMKLEYQRKVAMLNKLKKRGSANEMLEKT 433
              + +++ET A VLDK+LAWEKKL++EVK+ ELMK+EYQ+KV++LN+ KKRG++ E +EKT
Sbjct:   403 QESDEHETHATVLDKLLAWEKKLYDEVKQGELMKIEYQKKVSLLNRHKKRGASAETVEKT 462

Query:   434 KAAVAHLHTKYVVDMQTMDSSVSEVNRLRDEELYPKLVALVNGMAKMWENMCIHHDSQLT 493
             KAAV+HLHT+Y+VDMQ+MDS+VSEVNRLRD++LYP+LVALV GMAKMW NMCIHHD+QL 
Sbjct:   463 KAAVSHLHTRYIVDMQSMDSTVSEVNRLRDDQLYPRLVALVEGMAKMWTNMCIHHDTQLG 522

Query:   494 IVSELKPLDIAHAVKXXXXXXXXXXXXLFTVVQKWHTEFEKFVNHQKQFIQALTSWLKLN 553
             IV ELK L+I+ ++K              TV+++WH +F+  V HQKQ+I +L +WLKLN
Sbjct:   523 IVGELKALEISTSLKETTKQHHHQTRQFCTVLEEWHVQFDTLVTHQKQYINSLNNWLKLN 582

Query:   554 LIPIESSLKERVTSPPRAPNPPIQALLHSWHDYLEKLPDEIAKSAISSFAAVIKTIMLHQ 613
             LIPIESSLKE+V+SPPR   PPIQALLHSWHD LEKLPDE+AKSAISSFAAVIKTI+LHQ
Sbjct:   583 LIPIESSLKEKVSSPPRPQRPPIQALLHSWHDRLEKLPDEVAKSAISSFAAVIKTILLHQ 642

Query:   614 XXXXXXXXXXXXTRKELLRKTHAYEEWHRKYKKTHSEESEAERGDDANT--RDPVLDRQI 671
                         TR+E +RK   +E+W++K+ +      EAE GDDA T  RD V +R+I
Sbjct:   643 EEEMKLKEKCEETRREFIRKKQGFEDWYQKHLQKRGPTEEAEGGDDATTSSRDHVTERRI 702

Query:   672 VIESLRKRLEEETEAFRRHCLQVREKSLGSLKLRLPDLFRAVSDFAHASFDAYEKLRSIT 731
              +E+L+KRLEEE EA +RHC+QVREKSL SLK+RLP++FRA+SD+AHA  D+YEKLR I+
Sbjct:   703 AVETLKKRLEEEEEAHQRHCVQVREKSLNSLKIRLPEIFRALSDYAHACADSYEKLRIIS 762

Query:   732 QSQNSNGGRVAS 743
             QSQ SNGG   S
Sbjct:   763 QSQKSNGGATES 774

GO:0005634 "nucleus" evidence=ISM

GO:0006306 "DNA methylation" evidence=RCA

GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA

GO:0008356 "asymmetric cell division" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0016570 "histone modification" evidence=RCA

GO:0031047 "gene silencing by RNA" evidence=RCA

GO:0031048 "chromatin silencing by small RNA" evidence=RCA

GO:0048449 "floral organ formation" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

TAIR|locus:2018174 AT1G52320 "AT1G52320" [Arabidopsis thaliana (taxid:3702)]

 Score = 1251 (445.4 bits), Expect = 4.6e-150, Sum P(2) = 4.6e-150
 Identities = 250/453 (55%), Positives = 321/453 (70%)

Query:   286 PAEFVSKRAIATVS-LMKVLNQIDDHFLKASQSAKDVSNMLEANRLHYHSNFADNRALID 344
             P E    R   T + L  V  ++DD+FLKAS+SA DVS MLEA RLHYHSNFADNR  ID
Sbjct:   336 PGERRGMRMPVTATHLANVFIELDDNFLKASESAHDVSKMLEATRLHYHSNFADNRGHID 395

Query:   345 HSARVMRVITWNRSFRGLGLPHAEIERNEADLEDYETLAIVLDKMLAWEKKLFEEVKRAE 404
             HSARVMRVITWNRSFRG+  P+A+  +++ DLE+ ET A VLDK+LAWEKKL++EVK  E
Sbjct:   396 HSARVMRVITWNRSFRGI--PNADDGKDDVDLEENETHATVLDKLLAWEKKLYDEVKAGE 453

Query:   405 LMKLEYQRKVAMLNKLKKRGSANEMLEKTKAAVAHLHTKYVVDMQTMDSSVSEVNRLRDE 464
             LMK+EYQ+KVA LN++KKRG  ++ LE+ KAAV+HLHT+Y+VDMQ+MDS+VSE+NRLRDE
Sbjct:   454 LMKIEYQKKVAHLNRVKKRGGHSDSLERAKAAVSHLHTRYIVDMQSMDSTVSEINRLRDE 513

Query:   465 ELYPKLVALVNGMAKMWENMCIHHDSQLTIVSELKPLDIAHAVKXXXXXXXXXXXXLFTV 524
             +LY KLV LV  M KMWE M IHH  Q  I   L+ LD++ AVK            L  V
Sbjct:   514 QLYLKLVHLVEAMGKMWEMMQIHHQRQAEISKVLRSLDVSQAVKETNDHHHERTIQLLAV 573

Query:   525 VQKWHTEFEKFVNHQKQFIQALTSWLKLNLIPIESSLKERVTSPPRAPNPPIQALLHSWH 584
             VQ+WHT+F + ++HQK++I+AL  WLKLNLIPIES+LKE+V+SPPR PNP IQ LLH+W+
Sbjct:   574 VQEWHTQFCRMIDHQKEYIKALGGWLKLNLIPIESTLKEKVSSPPRVPNPAIQKLLHAWY 633

Query:   585 DYLEKLPDEIAKSAISSFAAVIKTIMLHQXXXXXXXXXXXXTRKELLRKTHAYEEWHRKY 644
             D L+K+PDE+AKSAI +FAAV+ TIM  Q            TRKEL RK   +E+W+ KY
Sbjct:   634 DRLDKIPDEMAKSAIINFAAVVSTIMQQQEDEISLRNKCEETRKELGRKIRQFEDWYHKY 693

Query:   645 KKTHSEESEAERGDDANTRDPVLDRQIVIESLRKRLEEETEAFRRHCLQVREKSLGSLKL 704
              +    E       D +  D V  RQ  +E ++KRLEEE EA+ R   QVREKSL SL+ 
Sbjct:   694 IQKRGPEGMNPDEADNDHNDEVAVRQFNVEQIKKRLEEEEEAYHRQSHQVREKSLASLRT 753

Query:   705 RLPDLFRAVSDFAHASFDAYEKLRSITQSQNSN 737
             RLP+LF+A+S+ A++  D Y  +   ++ Q+ +
Sbjct:   754 RLPELFQAMSEVAYSCSDMYRAITYASKRQSQS 786

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

GO:0006487 "protein N-linked glycosylation" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0010388 "cullin deneddylation" evidence=RCA

GO:0016567 "protein ubiquitination" evidence=RCA

GO:0016571 "histone methylation" evidence=RCA

GO:0016579 "protein deubiquitination" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2081922 AT3G60320 "AT3G60320" [Arabidopsis thaliana (taxid:3702)]

 Score = 495 (179.3 bits), Expect = 5.2e-63, Sum P(2) = 5.2e-63
 Identities = 129/454 (28%), Positives = 232/454 (51%)

Query:   292 KRAIATVSLMKVLNQIDDHFLKASQSAKDVSNMLEANRLHYHSNFADNRALIDHSARVMR 351
             K  +    L ++++ I ++F KA+ S + VS MLE  R     +F+  +  + HS+ ++ 
Sbjct:   349 KMVVRHRDLKEIIDAIKENFDKAAASGEQVSQMLELGRAELDRSFSQLKKTVIHSSSLLS 408

Query:   352 VI--TWNRSFRGLGLPHAEIERNEADLEDY-ETLAIVLDKMLAWEKKLFEEVKRAELMKL 408
              +  TW  S   L + +  I+    D  +  ++L   LD++LAWEKKL+EE+K  E  K+
Sbjct:   409 NLSSTWT-SKPPLAVKY-RIDTTALDQPNSSKSLCSTLDRLLAWEKKLYEEIKAREGFKI 466

Query:   409 EYQRKVAMLNKLKKRGSANEMLEKTKAAVAHLHTKYVVDMQTMDSSVSEVNRLRDEELYP 468
             E+++K++ L   + +G     L+KTKA++  L +  +V  Q + ++ + + RLRD +L P
Sbjct:   467 EHEKKLSQLQSQEYKGEDEAKLDKTKASITRLQSLIIVTSQAVTTTSTAIIRLRDTDLVP 526

Query:   469 KLVALVNGMAKMWENMCIHHDSQLTIVSELKPLDIAHAVKXXXXXXXXXXXX--LFTVVQ 526
             +LV L +G   MW++M  +H++Q +IV +++ L I  + K              L + V 
Sbjct:   527 QLVELCHGFMYMWKSMHQYHETQNSIVEQVRGL-INRSGKGESTSELHRQATRDLESAVS 585

Query:   527 KWHTEFEKFVNHQKQFIQALTSWLKLNLIPIESSLKERVTSPPRAPNPPIQALLHSWHDY 586
              WH+ F   +  Q+ FI ++ +W KL L+P+    +E   +  + P     A    W   
Sbjct:   586 SWHSSFSSLIKFQRDFIHSVHAWFKLTLLPV---CQEDAANHHKEPLDAY-AFCDEWKLA 641

Query:   587 LEKLPDEIAKSAISSFAAVIKTIMLHQXXXXXXXXXXXXTRKELLRKTHAYEEWHRKYKK 646
             L+++PD +A  AI SF  V+  I   Q              KEL +K  +     RKY +
Sbjct:   642 LDRIPDTVASEAIKSFINVVHVISAKQADEHKIKKRTESASKELEKKASSVRNLERKYYQ 701

Query:   647 THSEESEA--ERGDD----ANTRDPVLDRQIVIESLRKRLEEETEAFRRHCLQVREKSLG 700
             ++S       E G D     + RDP+ D++  +   ++R+EEE   + +     R  +L 
Sbjct:   702 SYSMVGVGLPESGPDNQHMLDARDPLSDKKSELAVCQRRVEEEMVKYSKAIEVTRAMTLN 761

Query:   701 SLKLRLPDLFRAVSDFAHASFDAYEKLRSI-TQS 733
             +L+  LP +F++++ F+ A F   E L+++ T+S
Sbjct:   762 NLQTGLPGVFQSLTSFS-ALF--MESLQTVCTRS 792

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0007020 "microtubule nucleation" evidence=RCA

GO:0009637 "response to blue light" evidence=RCA

GO:0010155 "regulation of proton transport" evidence=RCA

GO:0046777 "protein autophosphorylation" evidence=RCA

TAIR|locus:2036900 AT1G21740 [Arabidopsis thaliana (taxid:3702)]

 Score = 391 (142.7 bits), Expect = 1.2e-38, Sum P(3) = 1.2e-38
 Identities = 116/497 (23%), Positives = 226/497 (45%)

Query:   256 DDFMKNDGDINVSVPEKVEGKVVIEHASTAPAEFVSKRAIATVSLMKVLNQIDDHFLKAS 315
             +++++  G ++  + E V     +E +  +    +S  A  T  L +V+ +I   F  AS
Sbjct:   458 EEYVRKKG-VSFELDENVTTSFDVESSKISSLSALSVHA--TRDLREVVKEIKSEFEVAS 514

Query:   316 QSAKDVSNMLEANRLHYHSNFADNRALIDHSARVMRVITWNR-SFRGLGLPHAEIER--- 371
                K+V+ +LE ++L Y    +  + +    +R+M ++  +  S R    P   +     
Sbjct:   515 SHGKEVAVLLEVSKLPYQQKSSGLKVIF---SRIMYLVAPSTVSSRSQPQPSIRLTSRIL 571

Query:   372 ------NEADLEDYET--LAIVLDKMLAWEKKLFEEVKRAELMKLEYQRKVAMLNKLKKR 423
                   N  D+ +  T  L+  L+++ AWEKKL++EVK  E +++ Y+ K   L KL   
Sbjct:   572 KIAKSYNGQDVREGLTGNLSATLEQLYAWEKKLYKEVKDEEKLRVVYEEKCRTLKKLDSL 631

Query:   424 GSANEMLEKTKAAVAHLHTKYVVDMQTMDSSVSEVNRLRDEELYPKLVALVNGMAKMWEN 483
             G+ +  ++ T+AA+  L TK  V ++++DS  S +++LRDEEL P+L  L++G+ +MW +
Sbjct:   632 GAESSKIDTTRAAIRKLLTKLDVCIRSVDSISSRIHKLRDEELQPQLTQLIHGLIRMWRS 691

Query:   484 MCIHHDSQLTIVSELKPLDIAHAVKXXXXXXXXXXXXLFTVVQKWHTEFEKFVNHQKQFI 543
             M   H  Q   + E K   +                 L   +++W   F  +VN QK ++
Sbjct:   692 MLKCHQKQFQAIMESKVRSLRANTGLQRDSGLKAILDLEMELREWCISFNDWVNTQKSYV 751

Query:   544 QALTSWLKLNLIPIESSLKERVT--SPPRAPNPPIQALLHSWHDYLEKLPDEIAKSAISS 601
             ++L  WL   L     S ++ +   SP R   P +  +   W + + ++  E   +A+  
Sbjct:   752 ESLNGWLSRCLHYEPESTEDGIAPFSPSRVGAPQVFVICKDWQEAMARISGENVSNAMQG 811

Query:   602 FAAVIKTIMLHQXXXXXXXXXXXXTRKELLRKTH--AYEEWHRKYKKTHSEESEAERGDD 659
             FA+ +  +   Q               +  ++ +    E    + +    ++  +E+   
Sbjct:   812 FASSLHELWERQDEEQRQRVKAEYVSHDFEKRLNDLRMERARVRMRNDQLQDGASEKSVV 871

Query:   660 ANTR--DPVLDRQIVIESLRKRLEEETEAFRRHCLQVREKSLGSLKLRLPDLFRAVSDFA 717
              +      + D ++ ++S+RK+LEEE    +     V   +  SL+  L  +F A+ +F 
Sbjct:   872 LSESGISALDDLKVDLDSMRKKLEEERARHKETIKLVNNAASSSLQAGLVPIFEALGNFT 931

Query:   718 HASFDAYEKLRSITQSQ 734
                  A+E +R   Q Q
Sbjct:   932 SQVVKAHEDVRFQQQQQ 948

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2204740 AT1G77500 [Arabidopsis thaliana (taxid:3702)]

 Score = 326 (119.8 bits), Expect = 3.1e-36, Sum P(3) = 3.1e-36
 Identities = 93/326 (28%), Positives = 156/326 (47%)

Query:   296 ATVSLMKVLNQIDDHFLKASQSAKDVSNMLEANRLHY-HSNFADNRALIDHSARVMRVIT 354
             AT  L +V+ +I   F  AS   K+V+ +LE  +L Y H N   N   +  S R+M ++ 
Sbjct:   447 ATRDLREVVKEIKSEFEIASSCGKEVALLLEVGKLPYQHKN---NGVKVILS-RIMYLVA 502

Query:   355 WN-RSFRGLGLPHAEIE---RNEADLEDYE----------TLAIVLDKMLAWEKKLFEEV 400
              + RS      P   I    R     + Y            L+  L+K+ AWEKKL++EV
Sbjct:   503 PSTRSSHSQ--PRLSIRLTSRTRKMAKSYNGQDVNGGFNGNLSSTLEKLYAWEKKLYKEV 560

Query:   401 KRAELMKLEYQRKVAMLNKLKKRGSANEMLEKTKAAVAHLHTKYVVDMQTMDSSVSEVNR 460
             K  E ++  Y+ K   L K+   G+ +  ++ T+AA+  L TK  V ++++DS  S +++
Sbjct:   561 KDEEKLRAIYEEKCRRLKKMDSHGAESIKIDATRAAIRKLLTKIDVCIRSVDSISSRIHK 620

Query:   461 LRDEELYPKLVALVNGMAKMWENMCIHHDSQLTIVSELKPLDIAHAVKXXXXXXXXXXXX 520
             LRDEEL P+L+ L++G+ +MW +M   H  Q   + E K   +                 
Sbjct:   621 LRDEELQPQLIQLIHGLIRMWRSMLRCHQKQFQAIRESKVRSLKANTTLQNDSGSTAILD 680

Query:   521 LFTVVQKWHTEFEKFVNHQKQFIQALTSWLKLNLIPIESSLKERVT--SPPRAPNPPIQA 578
             L   +++W   F  +VN QK ++Q L+ WL   L     +  + +   SP +   PPI  
Sbjct:   681 LEIELREWCISFNNWVNTQKSYVQFLSGWLTKCLHYEPEATDDGIAPFSPSQIGAPPIFI 740

Query:   579 LLHSWHDYLEKLPDEIAKSAISSFAA 604
             +   W + + ++  E   +A+  FA+
Sbjct:   741 ICKDWQEAMCRISGENVTNAMQGFAS 766

GO:0005634 "nucleus" evidence=ISM

GO:0052542 "defense response by callose deposition" evidence=RCA

TAIR|locus:2135292 AT4G39790 "AT4G39790" [Arabidopsis thaliana (taxid:3702)]

 Score = 291 (107.5 bits), Expect = 9.9e-35, Sum P(5) = 9.9e-35
 Identities = 84/279 (30%), Positives = 136/279 (48%)

Query:   346 SARVMRVITWNR--SFRGLGLPHAEIERNEADLED------YETLAIV-------LDKML 390
             S +V +VI W R  S R     +  I+ ++ D +D       E   ++       LD++ 
Sbjct:   322 SHQVTKVIVWKRTSSSRSSTSRNPLIQTSKEDHDDESGSDFIEEFCMISGSHSSSLDRLY 381

Query:   391 AWEKKLFEEVKRAELMKLEYQRKVAML-NKLKKRGSANEMLEKTKAAVAHLHTKYVVDMQ 449
             AWE+KL++EVK +E+++ EY RK   L N+  K  SA  M +KT+AA   LH++  V +Q
Sbjct:   382 AWERKLYDEVKASEMIRKEYDRKCEQLRNQFAKDHSAKSM-DKTRAAAKDLHSRIRVAIQ 440

Query:   450 TMDSSVSEVNRLRDEELYPKLVALVNGMAKMWENMC-IHHDSQLTIVSELKPLDIAHAVK 508
             +++S    + R+RD+EL+P+L+  + G+ +MW+ M   HH   +TI   L      H+ K
Sbjct:   441 SVESISKRIERIRDDELHPQLLEFLQGLIRMWKAMLECHHTQYITI--SLA-YHCRHSSK 497

Query:   509 XXXXXXXXXX--XXLFTVVQKWHTEFEKFVNHQKQFIQALTSWL-KLNLIPIESSLKERV 565
                           L    + +   F   V+    +++AL  WL    L+P E S + R 
Sbjct:   498 TAHESVLKRRILAELLEETECFGLSFVDLVHSMASYVEALNGWLHNCVLLPQERSTRNRR 557

Query:   566 T-SPPRAPNPPIQALLHSWHDYLEKLPDEIAKSAISSFA 603
               SP R   PPI  L   W   ++ LP +    +I  F+
Sbjct:   558 PWSPRRVLAPPIFVLCRDWSAGIKTLPSDELSGSIKGFS 596

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2059284 AT2G27090 [Arabidopsis thaliana (taxid:3702)]

 Score = 297 (109.6 bits), Expect = 8.9e-32, Sum P(4) = 8.9e-32
 Identities = 71/234 (30%), Positives = 117/234 (50%)

Query:   383 AIVLDKMLAWEKKLFEEVKRAELMKLEYQRKVAMLNKLKKRGSANEMLEKTKAAVAHLHT 442
             A  LD++ AWE+KL++EVK ++ ++ EY  K  +L +L+  G  ++ ++KT+A V  LH+
Sbjct:   427 ASTLDRLYAWERKLYDEVKGSQTVRREYDEKCRILRELESEGKGSQRIDKTRAVVKDLHS 486

Query:   443 KYVVDMQTMDSSVSEVNRLRDEELYPKLVALVNGMAKMWENMCIHHDSQLTIVSEL-KPL 501
             +  V +  +DS    +  LRD EL P+L  L+ G+++MWE M   H  Q  ++    +  
Sbjct:   487 RIRVAIHRIDSISRRIEELRDNELQPQLEELIEGLSRMWEVMLECHKVQFQLIKACYRGG 546

Query:   502 DIAHAVKXXXXXXXXXXXXLFTVVQKWHTEFEKFVNHQKQFIQALTSWL-KLNLIPIESS 560
             +I   +             L   +    + F K++  QK +IQA+  WL K   +P  S 
Sbjct:   547 NIK--LNMQSELHRQVTSHLEDELCALASSFTKWITGQKSYIQAINEWLVKCVALPQRSK 604

Query:   561 LKERVTSPP-RAPNPPIQALLHSWHDYLEKLPDEIAKSAISSFAAVIKTIMLHQ 613
              K R   P  R   PPI A    W + LE LP +    +I + A+ +   +  Q
Sbjct:   605 RKRRAPQPSLRNYGPPIYATCGIWLEKLEVLPTKEVSGSIKALASDVARFLPRQ 658

GO:0005634 "nucleus" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0006486 "protein glycosylation" evidence=RCA

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

TAIR|locus:2030382 AT1G20530 "AT1G20530" [Arabidopsis thaliana (taxid:3702)]

 Score = 300 (110.7 bits), Expect = 1.8e-31, Sum P(3) = 1.8e-31
 Identities = 82/353 (23%), Positives = 165/353 (46%)

Query:   260 KNDGDINVSVPEKVEGKVVIEHASTAPAEFVSKRAIATVSLMKVLNQIDDHFLKASQSAK 319
             +ND  I V   EK   ++  ++   AP E  SK    +  L +V  Q+ + F KAS+S  
Sbjct:   196 QNDEKIKVE-EEKKTLRISEKNRKRAPKE--SKDQKVSSDLSEVTKQLQEMFKKASESGN 252

Query:   320 DVSNMLEANRLHYHSNFADNRALIDHSARVMRVITWNRSFRGLGLPHAEIERNEADLEDY 379
             DVS M + +R  Y+       ++   + R++   +     + +  P    +    +  ++
Sbjct:   253 DVSKMFDTSRFRYYQK----SSVYQCNVRILLPSSNILYTKKVMTP---FDPKPVEESNF 305

Query:   380 ETLAIVLDKMLAWEKKLFEEVKRAELMKLEYQRKVAMLNKLKKRGSANEMLEKTKAAVAH 439
               L+  L K+  WEKKL++EVK  E ++  + +   +L +L+ + +    +E  ++++  
Sbjct:   306 NNLSSTLKKLFMWEKKLYQEVKAEEKLRTSHMKNYKLLRRLEAKSADLSKIEAIRSSIQC 365

Query:   440 LHTKYVVDMQTMDSSVSEVNRLRDEELYPKLVALVNGMAKMWENMCIHHDSQLTIVSELK 499
             L T+  V +  +++    +N+LRDEEL+ ++  L++ +++MW +M   H  Q  +++E K
Sbjct:   366 LSTRMRVSIHKINNICLTINKLRDEELWFQMKELIHRLSEMWNSMLECHSRQSKVIAEAK 425

Query:   500 PLDIAHAVKXXXXXXXXXXXXLFTVVQKWHTEFEKFVNHQKQFIQALTSWLKLNLIPIES 559
              LD     +            L   ++ W      +++ Q Q+++AL +WL   L     
Sbjct:   426 KLDKMTIKENLDLSQLELAMELKLELRNWSLSMSNWIDAQAQYVKALNNWLMRCL----- 480

Query:   560 SLKERVTSPPRAPNPPIQALLHSWHDYLEKLPDEIAKSAISSFAAVIKTIMLH 612
               + +  +P  +  PP+   +++W   LE    E        F   + TI++H
Sbjct:   481 KQEPQEPTPDLSEEPPLFGAINTWSQNLEISHGE------KEFTEAVYTILMH 527

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2126510 AT4G30130 "AT4G30130" [Arabidopsis thaliana (taxid:3702)]

 Score = 286 (105.7 bits), Expect = 2.4e-31, Sum P(2) = 2.4e-31
 Identities = 92/340 (27%), Positives = 159/340 (46%)

Query:   299 SLMKVLNQIDDHFLKASQSAKDVSNMLEANRLHY-HSNFADNRALID-----HSARVMRV 352
             S+ +V+  ++D F     + K+VS +LEA+R+ Y  SN      +++      S    R 
Sbjct:   304 SMAEVIKDLEDQFAIICTAGKEVSGLLEASRVQYTSSNELSAMTMLNPVALFRSGGSSRS 363

Query:   353 ITWNR---SFRGLGLPHAEIERNEADLEDYETLA----IVLDKMLAWEKKLFEEVKRAEL 405
              + +R   S  G G   +E E +    E+   L+      LD++ AWEKKL++EVK  + 
Sbjct:   364 SSSSRFLISSSG-GSRASEFESSSEFSEESCMLSGSHQSTLDRLYAWEKKLYDEVKSGDR 422

Query:   406 MKLEYQRKVAMLNKLKKRGSANEMLEKTKAAVAHLHTKYVVDMQTMDSSVSEVNRLRDEE 465
             +++ Y++K  +L     +G+ +  ++KT+A +  LHT+  V + +++S    +  LRD+E
Sbjct:   423 IRIAYEKKCLVLRNQDVKGADSSAVDKTRATIRDLHTQIKVSIHSIESISERIETLRDQE 482

Query:   466 LYPKLVALVNGMAKMWENMCIHHDSQLTIVSELKPL-----DIAHAVKXXXX-----XXX 515
             L P+L+ LV G+A+MW+ M   H  Q   + E K L        H  +            
Sbjct:   483 LLPQLLELVQGLAQMWKVMAECHQIQKRTLDEAKLLLATTPSNRHKKQQQTSLPEINSQR 542

Query:   516 XXXXXLFTVVQ--KWHTEFEKFVNHQKQFIQALTSWLKLNLIPIESSLKERVTSPPRAPN 573
                  L  VVQ   W   F+ ++  Q+ +I +LT WL L     +    E+VT     P+
Sbjct:   543 LARSALHLVVQLRNWRACFQAWITSQRSYILSLTGWL-LRCFRCDPD-PEKVTLTS-CPH 599

Query:   574 PPIQALLHSWHDYLEKLPDEIAKSAISSFAAVIKTIMLHQ 613
             P  +  +  W   L  L ++     +  FA+ +  I   Q
Sbjct:   600 PIYEVCIQ-WSRLLNGLNEKPVLDKLDFFASGMGAIYARQ 638

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0006306 "DNA methylation" evidence=RCA

GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA

GO:0007267 "cell-cell signaling" evidence=RCA

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0009886 "post-embryonic morphogenesis" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA

GO:0031047 "gene silencing by RNA" evidence=RCA

GO:0031048 "chromatin silencing by small RNA" evidence=RCA

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA

GO:0048451 "petal formation" evidence=RCA

GO:0048453 "sepal formation" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

GO:0048507 "meristem development" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

TAIR|locus:2059057 AT2G19090 "AT2G19090" [Arabidopsis thaliana (taxid:3702)]

 Score = 283 (104.7 bits), Expect = 2.5e-31, Sum P(2) = 2.5e-31
 Identities = 90/351 (25%), Positives = 160/351 (45%)

Query:   289 FVSKRAIATVSLMKVLNQIDDHFLKASQSAKDVSNMLEANRLHYHSNFADN--RALIDHS 346
             +V++R     S+ +V+  ++D F     +AK+VS +LEA R  Y S+F D+  R +++  
Sbjct:   379 YVNRRP---TSMAEVIKDLEDQFTTICDAAKEVSGLLEAGRAQYTSSFNDHSARKMLNPV 435

Query:   347 ARVMRVITWNRSFRGL----GLPHAEIERNEADLEDYETLA-----IVLDKMLAWEKKLF 397
             A      + + S R L    G        + +D+ D   +        LD++ AWEKKL+
Sbjct:   436 ALFRSGSSRSSSSRFLITSSGGSRESGSESRSDVSDESCMISGSHQTTLDRLFAWEKKLY 495

Query:   398 EEVKRAELMKLEYQRKVAMLNKLKKRGSANEMLEKTKAAVAHLHTKYVVDMQTMDSSVSE 457
             +EV+  E ++  Y++K   L     +G     ++KT+A +  L T+  V + +++S    
Sbjct:   496 DEVRSGERVRRAYEKKCMQLRNQDVKGDDPLAVDKTRATIRDLDTQIKVSIHSIESISKR 555

Query:   458 VNRLRDEELYPKLVALVNGMAKMWENMCIHHDSQLTIVSELK------PLDIAHAVKX-- 509
             +  LRD+EL P+L+ LV G+ +MW+ M   H  Q   + E K      P+   H  +   
Sbjct:   556 IETLRDQELLPQLLELVEGLTRMWKVMAESHQIQKRTLDEAKLLLAGTPVSKRHKKRQPP 615

Query:   510 ------XXXXXXXXXXXLFTVVQKWHTEFEKFVNHQKQFIQALTSWLKLNLIPIESSL-K 562
                              L   ++ W T FE ++  Q+ +++AL+ WL L     +    K
Sbjct:   616 IMPEAINSQRLAQSALNLEAQLRNWRTCFEFWITSQRSYMKALSGWL-LRCFRCDPDPEK 674

Query:   563 ERVTSPPRAPNPPIQALLHSWHDYLEKLPDEIAKSAISSFAAVIKTIMLHQ 613
              R++S       PI  +   W   L  L ++     +  FA+ + +I   Q
Sbjct:   675 VRLSSCLH----PIYRVCIQWSRLLNSLNEKPVLDKLEFFASGMGSIYARQ 721

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	743
pfam04782	309	pfam04782, DUF632, Protein of unknown function (DU	1e-109
pfam04783	60	pfam04783, DUF630, Protein of unknown function (DU	2e-25
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	3e-05
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	7e-05
pfam06346	160	pfam06346, Drf_FH1, Formin Homology Region 1	1e-04
pfam06346	160	pfam06346, Drf_FH1, Formin Homology Region 1	2e-04
pfam06346	160	pfam06346, Drf_FH1, Formin Homology Region 1	3e-04
pfam06346	160	pfam06346, Drf_FH1, Formin Homology Region 1	6e-04
pfam00183	529	pfam00183, HSP90, Hsp90 protein	7e-04
pfam06346	160	pfam06346, Drf_FH1, Formin Homology Region 1	0.001
PRK05901	509	PRK05901, PRK05901, RNA polymerase sigma factor; P	0.001
pfam03066	146	pfam03066, Nucleoplasmin, Nucleoplasmin	0.002
pfam06346	160	pfam06346, Drf_FH1, Formin Homology Region 1	0.003
PTZ00415	2849	PTZ00415, PTZ00415, transmission-blocking target a	0.004

>gnl|CDD|218262 pfam04782, DUF632, Protein of unknown function (DUF632)

 Score =  333 bits (856), Expect = e-109
 Identities = 134/314 (42%), Positives = 206/314 (65%), Gaps = 8/314 (2%)

Query: 299 SLMKVLNQIDDHFLKASQSAKDVSNMLEANRLHYHSNFADNRALIDHSARVMRVITWNRS 358
            L +V+ +I+++FLKA++S K+VS +LEA ++ YHS F+D +    HS+RVM+ +TWNRS
Sbjct: 1   DLAEVVKEIEEYFLKAAESGKEVSKLLEAGKVPYHSKFSDLKKD--HSSRVMKPLTWNRS 58

Query: 359 FRGLGLPHAEIER-NEADLEDYETLAIVLDKMLAWEKKLFEEVKRAELMKLEYQRKVAML 417
           F+             E +  +  + +  LDK+ AWEKKL++EVK  E +++EY++K A L
Sbjct: 59  FKP---KSELDSDSFEDEDMESGSHSSTLDKLYAWEKKLYDEVKAEEKLRIEYEKKCAQL 115

Query: 418 NKLKKRGSANEMLEKTKAAVAHLHTKYVVDMQTMDSSVSEVNRLRDEELYPKLVALVNGM 477
            +L KRG+ +  +EKT+AAV  LHT+ +V +Q +DS    +N+LRDEELYP+LV L++G+
Sbjct: 116 RRLDKRGAESSKIEKTRAAVRDLHTRIIVSIQAVDSISKRINKLRDEELYPQLVELIHGL 175

Query: 478 AKMWENMCIHHDSQLTIVSELKPLDIAHAVKETTQHHHERTEELFTVVQKWHTEFEKFVN 537
            +MW++M   H+ QL I+ E K LD + + K T++ H + T +L   +++WH+ F  +++
Sbjct: 176 TRMWKSMLECHEIQLHIIQEAKLLDSSPSGKPTSESHRQATLQLEAELREWHSSFSNWID 235

Query: 538 HQKQFIQALTSWLKLNLIP--IESSLKERVTSPPRAPNPPIQALLHSWHDYLEKLPDEIA 595
            Q+ +++AL  WLKL LIP  IE+   E   SP R   PPI AL   W   LE+LPD+  
Sbjct: 236 AQRSYVKALNGWLKLCLIPEPIETDDGEPPFSPGRLGAPPIFALCEEWSQALERLPDKEV 295

Query: 596 KSAISSFAAVIKTI 609
           K AI SFA+V+ TI
Sbjct: 296 KEAIKSFASVVHTI 309

This plant protein may be a leucine zipper, but there is no experimental evidence for this. Length = 309

>gnl|CDD|191091 pfam04783, DUF630, Protein of unknown function (DUF630)

 Score = 99.2 bits (248), Expect = 2e-25
 Identities = 33/59 (55%), Positives = 44/59 (74%)

Query: 1  MGCAQSKIDNEEAVARSKDRRNLMKDAVSARNAFASGHSGYSFALKNVGAALSDFAHGE 59
          MGCA SK+D+EEAVA  ++R+ L+K AV AR A A+ H+ Y  +L++VGAAL  FA GE
Sbjct: 1  MGCAASKLDDEEAVALCRERKRLIKAAVDARYALAAAHAAYLRSLRSVGAALRRFAEGE 59

This region is sometimes found at the N-terminus of putative plant bZIP proteins. Its function is not known. Structural modelling suggests this domain may bind nucleic acids. Length = 60

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 47.3 bits (112), Expect = 3e-05
 Identities = 21/34 (61%), Positives = 27/34 (79%)

Query: 127 TEDEEEEEDEEDENENDIEEEEEEEVEAEEDESI 160
           +E+EEEEE+EE+E E + EEEEEEE E EE  S+
Sbjct: 863 SEEEEEEEEEEEEEEEEEEEEEEEEEENEEPLSL 896

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 46.1 bits (109), Expect = 7e-05
 Identities = 20/30 (66%), Positives = 24/30 (80%)

Query: 129 DEEEEEDEEDENENDIEEEEEEEVEAEEDE 158
           D EEEE+EE+E E + EEEEEEE E EE+E
Sbjct: 862 DSEEEEEEEEEEEEEEEEEEEEEEEEEENE 891

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|148139 pfam06346, Drf_FH1, Formin Homology Region 1

 Score = 42.6 bits (100), Expect = 1e-04
 Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 9/49 (18%)

Query: 70  PLDPTP-----PPPPPLSSLDTLPPPPPPLPNFS----PSPIKRAASLP 109
           P  P P     PPPPPL     +PPPPPPLP  +    P P+     +P
Sbjct: 74  PPPPLPGAAGIPPPPPLPGGAGIPPPPPPLPGGAAVPPPPPLPGGPGVP 122

This region is found in some of the Diaphanous related formins (Drfs). It consists of low complexity repeats of around 12 residues. Length = 160

>gnl|CDD|148139 pfam06346, Drf_FH1, Formin Homology Region 1

 Score = 41.9 bits (98), Expect = 2e-04
 Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 10/49 (20%)

Query: 70  PLDPTP-----PPPPPLSSLDTLPPPPPPLPNF----SPSPIKRAASLP 109
           P  P P     PPPPPL     + PPPPPLP       P P+  A ++P
Sbjct: 26  PPPPLPGGTGIPPPPPLPGGAAI-PPPPPLPGVAGIPPPPPLPGATAIP 73

This region is found in some of the Diaphanous related formins (Drfs). It consists of low complexity repeats of around 12 residues. Length = 160

>gnl|CDD|148139 pfam06346, Drf_FH1, Formin Homology Region 1

 Score = 41.9 bits (98), Expect = 3e-04
 Identities = 16/31 (51%), Positives = 17/31 (54%), Gaps = 5/31 (16%)

Query: 70  PLDPTP-----PPPPPLSSLDTLPPPPPPLP 95
           P  P P     PPPPPL     +PPPPPP P
Sbjct: 99  PPPPLPGGAAVPPPPPLPGGPGVPPPPPPFP 129

This region is found in some of the Diaphanous related formins (Drfs). It consists of low complexity repeats of around 12 residues. Length = 160

>gnl|CDD|148139 pfam06346, Drf_FH1, Formin Homology Region 1

 Score = 40.7 bits (95), Expect = 6e-04
 Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 5/44 (11%)

Query: 70  PLDPTPPPPPPLSSLDTLPPPPPPLPNFS----PSPIKRAASLP 109
           P     PPPPPL  +  + PPPPPLP  +    P P+  AA +P
Sbjct: 43  PGGAAIPPPPPLPGVAGI-PPPPPLPGATAIPPPPPLPGAAGIP 85

This region is found in some of the Diaphanous related formins (Drfs). It consists of low complexity repeats of around 12 residues. Length = 160

>gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein

 Score = 42.4 bits (100), Expect = 7e-04
 Identities = 17/46 (36%), Positives = 28/46 (60%)

Query: 124 VAITEDEEEEEDEEDENENDIEEEEEEEVEAEEDESITQKNKNKNK 169
             + ++EEEEE EE + E +   ++EEEV+ EE++   +K   K K
Sbjct: 33  KEVPDEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVK 78

Length = 529

>gnl|CDD|148139 pfam06346, Drf_FH1, Formin Homology Region 1

 Score = 39.9 bits (93), Expect = 0.001
 Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 4/39 (10%)

Query: 75  PPPPPPLSSLDTLPPPPPPLPNFS----PSPIKRAASLP 109
           PPPPPPL     +PPPPP          P P   A  +P
Sbjct: 97  PPPPPPLPGGAAVPPPPPLPGGPGVPPPPPPFPGAPGIP 135

This region is found in some of the Diaphanous related formins (Drfs). It consists of low complexity repeats of around 12 residues. Length = 160

>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional

 Score = 41.5 bits (98), Expect = 0.001
 Identities = 16/44 (36%), Positives = 35/44 (79%)

Query: 120 DFDNVAITEDEEEEEDEEDENENDIEEEEEEEVEAEEDESITQK 163
           D D+  I +D+++E+D+ED++++D+++E+EE+ EA+E E ++  
Sbjct: 141 DLDDDDIDDDDDDEDDDEDDDDDDVDDEDEEKKEAKELEKLSDD 184

Length = 509

>gnl|CDD|145949 pfam03066, Nucleoplasmin, Nucleoplasmin

 Score = 39.2 bits (92), Expect = 0.002
 Identities = 14/27 (51%), Positives = 22/27 (81%)

Query: 126 ITEDEEEEEDEEDENENDIEEEEEEEV 152
            ++D+EE+E+EED+ E+D E+E EEE 
Sbjct: 113 ESDDDEEDEEEEDDEEDDDEDESEEEE 139

Nucleoplasmins are also known as chromatin decondensation proteins. They bind to core histones and transfer DNA to them in a reaction that requires ATP. This is thought to play a role in the assembly of regular nucleosomal arrays. Length = 146

>gnl|CDD|148139 pfam06346, Drf_FH1, Formin Homology Region 1

 Score = 38.8 bits (90), Expect = 0.003
 Identities = 21/49 (42%), Positives = 24/49 (48%), Gaps = 10/49 (20%)

Query: 70  PLDPTP-----PPPPPLSSLDTLPPPPPPLPNFS----PSPIKRAASLP 109
           P  P P     PPPPPL    T  PPPPPLP  +    P P+   A +P
Sbjct: 14  PPPPLPGGVCIPPPPPLPG-GTGIPPPPPLPGGAAIPPPPPLPGVAGIP 61

This region is found in some of the Diaphanous related formins (Drfs). It consists of low complexity repeats of around 12 residues. Length = 160

>gnl|CDD|185603 PTZ00415, PTZ00415, transmission-blocking target antigen s230; Provisional

 Score = 40.4 bits (94), Expect = 0.004
 Identities = 16/31 (51%), Positives = 27/31 (87%)

Query: 128 EDEEEEEDEEDENENDIEEEEEEEVEAEEDE 158
           +DE+E+ED++DE +++ EEEEEEE++  +DE
Sbjct: 156 DDEDEDEDDDDEEDDEEEEEEEEEIKGFDDE 186

Length = 2849

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	743
PF04782	312	DUF632: Protein of unknown function (DUF632); Inte	100.0
PF04783	60	DUF630: Protein of unknown function (DUF630); Inte	99.88
KOG1924	1102	consensus RhoA GTPase effector DIA/Diaphanous [Sig	98.95
KOG1924	1102	consensus RhoA GTPase effector DIA/Diaphanous [Sig	98.25
KOG1923	830	consensus Rac1 GTPase effector FRL [Signal transdu	95.81
cd07599	216	BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain o	95.74
cd07591	224	BAR_Rvs161p The Bin/Amphiphysin/Rvs (BAR) domain o	95.14
cd07676	253	F-BAR_FBP17 The F-BAR (FES-CIP4 Homology and Bin/A	94.69
PF03114	229	BAR: BAR domain; InterPro: IPR004148 Endocytosis a	93.27
cd07653	251	F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and B	92.92
cd07680	258	F-BAR_PACSIN1 The F-BAR (FES-CIP4 Homology and Bin	91.37
KOG2675	480	consensus Adenylate cyclase-associated protein (CA	90.2
PF05308	253	Mito_fiss_reg: Mitochondrial fission regulator; In	90.11
cd07675	252	F-BAR_FNBP1L The F-BAR (FES-CIP4 Homology and Bin/	88.52
cd07671	242	F-BAR_PSTPIP1 The F-BAR (FES-CIP4 Homology and Bin	88.29
PF01213	312	CAP_N: Adenylate cyclase associated (CAP) N termin	87.17
cd07598	211	BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of	87.15
PF05308	253	Mito_fiss_reg: Mitochondrial fission regulator; In	87.13
COG5178	2365	PRP8 U5 snRNP spliceosome subunit [RNA processing	86.99
cd07604	215	BAR_ASAPs The Bin/Amphiphysin/Rvs (BAR) domain of	86.91
KOG3671	569	consensus Actin regulatory protein (Wiskott-Aldric	86.65
cd07307	194	BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimeri	85.56
cd07657	237	F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin	83.81
cd07672	240	F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin	82.32

>PF04782 DUF632: Protein of unknown function (DUF632); InterPro: IPR006867 This conserved region contains a leucine zipper-like domain

Probab=100.00  E-value=3.8e-112  Score=900.74  Aligned_cols=310  Identities=41%  Similarity=0.716  Sum_probs=292.8

Q ss_pred             cHHHHHHHHHHHHHHhhcchhhHHhhhhhcccCCCCcccccccccccccccceeecccccccCCCCCcchhhhccccchh
Q 004600          299 SLMKVLNQIDDHFLKASQSAKDVSNMLEANRLHYHSNFADNRALIDHSARVMRVITWNRSFRGLGLPHAEIERNEADLED  378 (743)
Q Consensus       299 dL~ev~keId~~F~kAsesg~eVs~mLEa~k~~y~~~~~~~r~~~~~Sskv~~~itW~~S~~~~~~~~~~~~~~~~~~~~  378 (743)
                      ||++||||||+||+|||+||+|||+||||+|++||++|...+++.++|++|+++|||+||+++. ........++.+.+.
T Consensus         1 dl~ev~kei~~~F~kAs~sg~eVs~lLE~~k~~~~~~~~~~~~~~~~s~~~~~~~~w~~s~~s~-~~~~~~~~~~~~~~~   79 (312)
T PF04782_consen    1 DLLEVVKEIDDYFLKASESGKEVSRLLEAGKIHYHSNFSDLKGKVDHSSRVLSPISWSRSSSSR-ISNSDSDFDEEECMG   79 (312)
T ss_pred             CHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCCCCCcccccccccccchhhhccccccCCCCCCc-ccccccCcCcccCcc
Confidence            7999999999999999999999999999999999999999998889999999999999998773 111112222233456


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHhhhhcCCchhhhHHHHHHHHhhhhhHHHHHHhhHHHHHhh
Q 004600          379 YETLAIVLDKMLAWEKKLFEEVKRAELMKLEYQRKVAMLNKLKKRGSANEMLEKTKAAVAHLHTKYVVDMQTMDSSVSEV  458 (743)
Q Consensus       379 ~~shssTLdKLyAWEKKLY~EVKa~E~lR~eyeKK~~~Lr~qd~rGad~~kidKTra~Vk~L~Tri~VaiqsvdsiS~~I  458 (743)
                      +|+||||||||||||||||+|||++|+||++|||||++||+||+||+++.+|||||++|++|+|||+|+||+||+||++|
T Consensus        80 ~gshssTLdkLyaWEKKLY~EVKa~E~~r~~yeKK~~~Lr~~d~kg~~~~kidkTra~v~~L~tri~Vaiq~v~siS~~I  159 (312)
T PF04782_consen   80 SGSHSSTLDKLYAWEKKLYDEVKAEEKLRIEYEKKCKQLRKQDAKGADSSKIDKTRASVKDLHTRIRVAIQSVDSISKRI  159 (312)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004600          459 NRLRDEELYPKLVALVNGMAKMWENMCIHHDSQLTIVSELKPLDIAHAVKETTQHHHERTEELFTVVQKWHTEFEKFVNH  538 (743)
Q Consensus       459 ~kLRDeEL~PQL~ELi~GL~~MWk~M~ecHq~Q~~ii~~~k~L~~~~s~~~tse~h~~aT~qLE~el~~W~ssF~~~I~~  538 (743)
                      +||||+||||||+|||+||++|||+|+||||+|++||+++|+|+++.++.+|+++||+||+|||.||++||+|||+||++
T Consensus       160 ~kLRDeEL~PQL~eLi~Gl~~MWk~M~ecHq~Q~~ii~~~k~l~~~~~~~~~s~~h~~at~~Le~el~~W~~sF~~~i~~  239 (312)
T PF04782_consen  160 EKLRDEELYPQLVELIQGLMRMWKSMLECHQKQFQIIQEAKSLDSSPSNEPTSESHRQATLQLEAELQNWHSSFCKWIKA  239 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhcc--ccccCcccCCCCCCCCCCCCcHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHH
Q 004600          539 QKQFIQALTSWLKLNL--IPIESSLKERVTSPPRAPNPPIQALLHSWHDYLEKLPDEIAKSAISSFAAVIKTI  609 (743)
Q Consensus       539 Qk~YV~aLn~WL~l~l--~p~e~~~~~~~~Sp~r~~aPpIf~lC~~W~~aLdrlpdk~v~~AIksF~~~v~~i  609 (743)
                      ||+||+||||||++|+  .|+++.++.+++||+|.++||||+||++|+++||+||+++|++|||+|+++||+|
T Consensus       240 Qk~YV~aLn~WL~~~l~~~~~~~~~~~~~~sp~~~~aPpIf~lC~~W~~aLd~lp~k~v~~AIk~f~~~v~~i  312 (312)
T PF04782_consen  240 QKSYVKALNGWLKLCLMQEPEETSDGRPPSSPRRSGAPPIFVLCNDWSQALDRLPDKEVSEAIKSFAAVVHHI  312 (312)
T ss_pred             HHHHHHHHHHHHHHhccccccccccCCCCCCccccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC
Confidence            9999999999999999  4778888888999999999999999999999999999999999999999999986

The proteins are found only in plants and their functions are unknown.

>PF04783 DUF630: Protein of unknown function (DUF630); InterPro: IPR006868 This region is sometimes found at the N terminus of putative plant bZIP proteins IPR006867 from INTERPRO

Probab=99.88  E-value=2.2e-23  Score=172.24  Aligned_cols=60  Identities=58%  Similarity=0.907  Sum_probs=59.0

Q ss_pred             CCCCccccchHHHHHHhHHHHHHHHHHHHHhHHHHhhHhhHHHHHHhhhhhhhhhccCcc
Q 004600            1 MGCAQSKIDNEEAVARSKDRRNLMKDAVSARNAFASGHSGYSFALKNVGAALSDFAHGES   60 (743)
Q Consensus         1 Mgc~~Skve~e~~v~rckeRkr~~k~av~aR~~fAAaH~~Y~~sLr~tgaALrdFaegEs   60 (743)
                      |||++||||+||+|++|||||+|||+||.+|++||+||.+|++|||++|++|++|+++|+
T Consensus         1 MGC~~SK~d~eeaV~~CkeRkr~~k~Av~~R~~lAaaH~aY~~SLr~~g~aL~~F~~~et   60 (60)
T PF04783_consen    1 MGCSQSKLDDEEAVSLCKERKRLMKQAVDARYALAAAHAAYIQSLRNVGAALRQFAEGET   60 (60)
T ss_pred             CCCCcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            999999999999999999999999999999999999999999999999999999999875

The function of this conserved region is not known.

>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]

Probab=98.95  E-value=5.1e-09  Score=120.74  Aligned_cols=49  Identities=8%  Similarity=0.057  Sum_probs=30.9

Q ss_pred             HHhHHHHHHHHHHHHHhHHHHhhHhhHHHHHHhhhhhhhhhccCcccCC
Q 004600           15 ARSKDRRNLMKDAVSARNAFASGHSGYSFALKNVGAALSDFAHGESVDN   63 (743)
Q Consensus        15 ~rckeRkr~~k~av~aR~~fAAaH~~Y~~sLr~tgaALrdFaegEs~~p   63 (743)
                      +++-+-...+.+...+|++.++-.......++..-+....+.+..+.++
T Consensus       474 qkA~e~~kk~~ke~ta~qe~qael~k~e~Ki~~l~ae~~al~s~~~~~~  522 (1102)
T KOG1924|consen  474 QKAAELEKKFDKELTARQEAQAELQKHEEKIKLLEAEKQALSSPSQLLP  522 (1102)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHhhhhcccCchhhhhccCcccCCC
Confidence            3455555566677888888776655555566656666666666655554

>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]

Probab=98.25  E-value=1.3e-05  Score=93.42  Aligned_cols=26  Identities=27%  Similarity=0.354  Sum_probs=17.6

Q ss_pred             hHHHHHhhhccccchhhHHHHHHHHH
Q 004600          451 MDSSVSEVNRLRDEELYPKLVALVNG  476 (743)
Q Consensus       451 vdsiS~~I~kLRDeEL~PQL~ELi~G  476 (743)
                      |-+.+.+-+.||-.|=|-.|+|||--
T Consensus       801 i~avt~ACEE~rkSesFs~lLeLvLl  826 (1102)
T KOG1924|consen  801 IVAVTAACEELRKSESFSKLLELVLL  826 (1102)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence            44555556667777888888777754

>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]

Probab=95.81  E-value=0.028  Score=66.78  Aligned_cols=11  Identities=18%  Similarity=0.298  Sum_probs=5.4

Q ss_pred             HHHHHhhhhhH
Q 004600          434 KAAVAHLHTKY  444 (743)
Q Consensus       434 ra~Vk~L~Tri  444 (743)
                      +..|++|+.|+
T Consensus       517 lskIErle~kl  527 (830)
T KOG1923|consen  517 LSKIERLEEKL  527 (830)
T ss_pred             hhhhhhhHHHH
Confidence            34455555554

>cd07599 BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 167 and similar proteins

Probab=95.74  E-value=2.9  Score=43.09  Aligned_cols=179  Identities=21%  Similarity=0.329  Sum_probs=103.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCcccCCCCCCCCCCCCcHHHHHHHHHHHhccCChHHH
Q 004600          516 ERTEELFTVVQKWHTEFEKFVNHQKQFIQALTSWLKLNLIPIESSLKERVTSPPRAPNPPIQALLHSWHDYLEKLPDEIA  595 (743)
Q Consensus       516 ~aT~qLE~el~~W~ssF~~~I~~Qk~YV~aLn~WL~l~l~p~e~~~~~~~~Sp~r~~aPpIf~lC~~W~~aLdrlpdk~v  595 (743)
                      ..+..|-.++..|..++....++|.+++.++.+=..    |..... ..+.+++  ..+.....|++|..+++.|-. .+
T Consensus        16 ~~~~kL~k~~k~y~~a~~~l~~~~~~~~~~~~~ly~----p~~~~~-~~~~~~~--~~~~~~~~~~~y~~~~~~l~~-~~   87 (216)
T cd07599          16 KSLKKLIEQSKAFRDSWRSILTHQIAFAKEFAELYD----PIVGPK-ESVGSHP--APESTLARLSRYVKALEELKK-EL   87 (216)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----CcCCCC-cCcCCCC--CcHHHHHHHHHHHHHHHHHHH-HH
Confidence            356778899999999999999999999988776543    332111 1111111  134477889999999998843 33


Q ss_pred             HHHHHHHHHHHHHHHHhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhh-cccchhhhccCCCCCCCCchhhhHHHH
Q 004600          596 KSAISSFAAVIKTIMLHQEEEM-KLKEKCEETRKELLRKTHAYEEWHRKYKK-THSEESEAERGDDANTRDPVLDRQIVI  673 (743)
Q Consensus       596 ~~AIksF~~~v~~i~~~Q~eE~-kqk~k~e~~~KeleKK~~~l~~~~~k~~~-~~~~~~~~~~~~~~~~~~~v~ekk~~l  673 (743)
                      ..-+..|...|    ..-..+. .+=..+..+-|.-++|+-.+++..+++.. ..       +....+     .....+|
T Consensus        88 ~~~l~~i~~~V----~~P~~~~~~~~~~i~k~IkKR~~k~lDyd~~~~k~~k~~~-------~k~~~~-----~kd~~kl  151 (216)
T cd07599          88 LEELEFFEERV----ILPAKELKKYIKKIRKTIKKRDHKKLDYDKLQNKLNKLLQ-------KKKELS-----LKDEKQL  151 (216)
T ss_pred             HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh-------cCCCCC-----hhHHHHH
Confidence            33333333221    1111111 11111222223333444444444444421 00       000111     1223466


Q ss_pred             HHHHHhhHHHHHHHHHHHHHHhhhhhhhhhcccHHHHHHHHHHHHHHHHHHHH
Q 004600          674 ESLRKRLEEETEAFRRHCLQVREKSLGSLKLRLPDLFRAVSDFAHASFDAYEK  726 (743)
Q Consensus       674 e~lrkrleeE~~~h~k~v~~tr~~tl~sLq~gLp~VFqAl~~Fs~~~~~aye~  726 (743)
                      ....++++..++.|...        .+.|+.-||.+|.....|-..|+.+|=-
T Consensus       152 ~kae~~l~~a~~~y~~l--------N~~Lk~eLP~l~~~~~~~~~~~~~~~~~  196 (216)
T cd07599         152 AKLERKLEEAKEEYEAL--------NELLKSELPKLLALADEFLPPLFKSFYY  196 (216)
T ss_pred             HHHHHHHHHHHHHHHHH--------HHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            77778888888887754        4678999999999999999999887643

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 167 (Rvs167p) and Schizosaccharomyces pombe Hob1 (homolog of Bin1). S. cerevisiae Rvs167p plays a role in regulation of the actin cytoskeleton, endocytosis, and sporulation. It forms a heterodimer with another BAR domain protein Rvs161p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. Rvs167p also interacts with the GTPase activating protein (GAP) Gyp5p, which is involved in ER to Golgi vesicle trafficking. BAR domains fo

>cd07591 BAR_Rvs161p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 161 and similar proteins

Probab=95.14  E-value=2.6  Score=44.13  Aligned_cols=157  Identities=20%  Similarity=0.284  Sum_probs=92.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCcccCCCCCCCCCCCCcHHHHHHHHHHHhccCChHHH
Q 004600          516 ERTEELFTVVQKWHTEFEKFVNHQKQFIQALTSWLKLNLIPIESSLKERVTSPPRAPNPPIQALLHSWHDYLEKLPDEIA  595 (743)
Q Consensus       516 ~aT~qLE~el~~W~ssF~~~I~~Qk~YV~aLn~WL~l~l~p~e~~~~~~~~Sp~r~~aPpIf~lC~~W~~aLdrlpdk~v  595 (743)
                      ..+..|-.++..|..++..+.++|....++|.+    .+.|..+.              ....+|..|...++.|.+..+
T Consensus        25 ~~~~kL~k~~k~y~da~~~l~~~q~~i~~~l~~----lY~p~~~~--------------~~~~~~~~y~~~v~~l~~~~~   86 (224)
T cd07591          25 KASTKLQKEAKGYLDSLRALTSSQARIAETISS----FYGDAGDK--------------DGAMLSQEYKQAVEELDAETV   86 (224)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcCCCCCc--------------cHhHHHHHHHHHHHHHHHHHH
Confidence            467889999999999999999999999999886    12243211              124688999888888754333


Q ss_pred             HH-----------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhccCCCCCCCC
Q 004600          596 KS-----------AISSFAAVIKTIMLHQEEEMKLKEKCEETRKELLRKTHAYEEWHRKYKKTHSEESEAERGDDANTRD  664 (743)
Q Consensus       596 ~~-----------AIksF~~~v~~i~~~Q~eE~kqk~k~e~~~KeleKK~~~l~~~~~k~~~~~~~~~~~~~~~~~~~~~  664 (743)
                      .+           =|..|.+.+..|-              .+-|.-++|.-.+++..+++..  ..+     ..   .++
T Consensus        87 ~el~~~~~~~V~~Pl~~~~~~~~~i~--------------k~IkKR~~KllDYD~~~~k~~k--l~~-----K~---~kd  142 (224)
T cd07591          87 KELDGPYRQTVLDPIGRFNSYFPEIN--------------EAIKKRNHKLLDYDAARAKVRK--LID-----KP---SED  142 (224)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHhhhHH--------------HHHHHHHhhHhhHHHHHHHHHH--HHh-----cc---cCC
Confidence            22           2222222222221              1112222333333333333210  000     00   011


Q ss_pred             chhhhHHHHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHH
Q 004600          665 PVLDRQIVIESLRKRLEEETEAFRRHCLQVREKSLGSLKLRLPDLFRAVSDFAHASFDAYEKL  727 (743)
Q Consensus       665 ~v~ekk~~le~lrkrleeE~~~h~k~v~~tr~~tl~sLq~gLp~VFqAl~~Fs~~~~~aye~l  727 (743)
                      +     .+|....+.++..++.|...        .+-|+.-||.+|.+-..|-..|+++|=.+
T Consensus       143 ~-----~kL~kae~el~~a~~~Ye~l--------N~~Lk~ELP~l~~~r~~~l~~~f~s~~~i  192 (224)
T cd07591         143 P-----TKLPRAEKELDEAKEVYETL--------NDQLKTELPQLVDLRIPYLDPSFEAFVKI  192 (224)
T ss_pred             H-----HHHHHHHHHHHHHHHHHHHH--------HHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            1     46777777888877777754        36788899999998888877777766544

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 161 (Rvs161p) and Schizosaccharomyces pombe Hob3 (homolog of Bin3). S. cerevisiae Rvs161p plays a role in regulating cell polarity, actin cytoskeleton polarization, vesicle trafficking, endocytosis, bud formation, and the mating response. It forms a heterodimer with another BAR domain protein Rvs167p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. S. pombe Hob3 is important in regulating filamentous actin localization an

>cd07676 F-BAR_FBP17 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17

Probab=94.69  E-value=7.1  Score=41.73  Aligned_cols=187  Identities=7%  Similarity=0.059  Sum_probs=96.7

Q ss_pred             HHHHHHHHHHHHHHHHHhhhccccccCcccCCCCCCCCCCCCcHHHHHHHHHHHhccCChHHHHHHHHHHHHHH------
Q 004600          533 EKFVNHQKQFIQALTSWLKLNLIPIESSLKERVTSPPRAPNPPIQALLHSWHDYLEKLPDEIAKSAISSFAAVI------  606 (743)
Q Consensus       533 ~~~I~~Qk~YV~aLn~WL~l~l~p~e~~~~~~~~Sp~r~~aPpIf~lC~~W~~aLdrlpdk~v~~AIksF~~~v------  606 (743)
                      ..=..--++|-+.|..|-++...-...     ..+     .-|.|.+|..|...|..+-  .+...=..|+..+      
T Consensus        29 kERa~IEkeYakkL~~L~kKy~~kk~~-----~~~-----~~~~~t~~~aw~~~l~e~~--~~A~~H~~~~~~L~~~v~~   96 (253)
T cd07676          29 KERTEIELSYAKQLRNLSKKYQPKKNS-----KEE-----EEYKYTSCRAFLMTLNEMN--DYAGQHEVISENLASQIIV   96 (253)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccc-----ccc-----ccccchHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence            333456799999999999986421100     000     1245788999997665432  1111112222222      


Q ss_pred             --HHHHHhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhccc-chh----hhc-cCCCCCCCCchhhhHHHHHHHH
Q 004600          607 --KTIMLHQEEEMK-LKEKCEETRKELLRKTHAYEEWHRKYKKTHS-EES----EAE-RGDDANTRDPVLDRQIVIESLR  677 (743)
Q Consensus       607 --~~i~~~Q~eE~k-qk~k~e~~~KeleKK~~~l~~~~~k~~~~~~-~~~----~~~-~~~~~~~~~~v~ekk~~le~lr  677 (743)
                        +.+......+++ .--+...+.+++++....|+.--.+|...-- .+.    ... +.+..-.+..+..=+..++...
T Consensus        97 ~l~~~~~~~k~~rK~~~~~~~k~qk~~~~~~~~lekaKk~Y~~acke~E~A~~~~~ka~~d~~~sk~~~eK~k~~~~~~~  176 (253)
T cd07676          97 ELTRYVQELKQERKSHFHDGRKAQQHIETCWKQLESSKRRFERDCKEADRAQQYFEKMDADINVTKADVEKARQQAQIRH  176 (253)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHH
Confidence              222221222211 1112334455555555555554444432100 000    000 0111112223333344444455


Q ss_pred             HhhHHHHHHHHHHHHHHhhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004600          678 KRLEEETEAFRRHCLQVREKSLGSLKLRLPDLFRAVSDFAHASFDAYEKLRSIT  731 (743)
Q Consensus       678 krleeE~~~h~k~v~~tr~~tl~sLq~gLp~VFqAl~~Fs~~~~~aye~l~~~s  731 (743)
                      .-++.-+..|...+..++...-.-...-||.||+.|-+|-...+.-+.++....
T Consensus       177 ~~~e~aKn~Y~~~l~~~N~~q~~~Y~e~mp~vfd~lQ~lee~Ri~~l~e~l~~~  230 (253)
T cd07676         177 QMAEDSKAEYSSYLQKFNKEQHEHYYTHIPNIFQKIQEMEERRIGRVGESMKTY  230 (253)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            556777889999999997777667778999999888777766666666655443

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Formin Binding Protein 17 (FBP17), also called FormiN Binding Protein 1 (FNBP1), is involved in dynamin-mediated endocytosis. It is recruited to clathrin-coated pits late in the endocytosis process and may play a role in the invagination and scission steps. FBP17 binds in vivo to tankyrase, a protein involved in telomere maintenance and mitogen activated protein kinase (MAPK) signaling. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.

>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment

Probab=93.27  E-value=9.5  Score=37.88  Aligned_cols=183  Identities=16%  Similarity=0.171  Sum_probs=87.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhhccccccCcccCCCCCCCCCCCCcHHHHHHHHHHHhccCCh
Q 004600          516 ERTEELFTVVQKWHTEFEKFVNHQK---QFIQALTSWLKLNLIPIESSLKERVTSPPRAPNPPIQALLHSWHDYLEKLPD  592 (743)
Q Consensus       516 ~aT~qLE~el~~W~ssF~~~I~~Qk---~YV~aLn~WL~l~l~p~e~~~~~~~~Sp~r~~aPpIf~lC~~W~~aLdrlpd  592 (743)
                      ..+..|...+..|..++.+++.++.   .-.+.|..+|............          -..+..-|......|..+=.
T Consensus        40 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~----------~~~~l~~~~~~~~~i~~~~~  109 (229)
T PF03114_consen   40 ESIKKLQKSLKKYLDSIKKLSASQKNMKSPFEELADALIELGSEFSDDSS----------LGNALEKFGEAMQEIEEARK  109 (229)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCHTHHHHHHHHHHHHHHHCTSTTCH----------HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhhhHHhhhhhHHHHHHHHHHHHHhccccccch----------hhhHHHHHHHHHHHHHHHHH
Confidence            4556666777777777777777777   3333444455432211110000          01244444444444433222


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhccCCCCCCCCchhhhHH
Q 004600          593 EIAKSAISSFAAVIKTIMLHQEEE-MKLKEKCEETRKELLRKTHAYEEWHRKYKKTHSEESEAERGDDANTRDPVLDRQI  671 (743)
Q Consensus       593 k~v~~AIksF~~~v~~i~~~Q~eE-~kqk~k~e~~~KeleKK~~~l~~~~~k~~~~~~~~~~~~~~~~~~~~~~v~ekk~  671 (743)
                      ......-..|..-+..++ .+-.+ .+.+++.+...-||++-...+.....+    +.             .   ..+..
T Consensus       110 ~~~~~~~~~vi~pl~~~~-~~~~~i~~~~kkr~~~~ldyd~~~~k~~k~~~~----~~-------------~---~~~~~  168 (229)
T PF03114_consen  110 ELESQIESTVIDPLKEFL-KEFKEIKKLIKKREKKRLDYDSARSKLEKLRKK----KS-------------K---SSKEE  168 (229)
T ss_dssp             HHHHHHHHHTHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTT----SS-------------B---THHHH
T ss_pred             HHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hc-------------c---cccHH
Confidence            222222233334444444 22222 334444444444444444333321110    00             0   01134


Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHH
Q 004600          672 VIESLRKRLEEETEAFRRHCLQVREKSLGSLKLRLPDLFRAVSDFAHASFDAYEKLRS  729 (743)
Q Consensus       672 ~le~lrkrleeE~~~h~k~v~~tr~~tl~sLq~gLp~VFqAl~~Fs~~~~~aye~l~~  729 (743)
                      +++..+...+.....+...+...-.+....|...|..++++...|...+.+.+++|..
T Consensus       169 ~l~~a~~~f~~~~~~l~~~l~~l~~~~~~~l~~~l~~~i~~q~~~~~~~~~~l~~l~~  226 (229)
T PF03114_consen  169 KLEEAKEEFEALNEELKEELPKLFAKRQDILEPCLQSFIEAQLQYFQQLYQILEELQP  226 (229)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555555555555555555555555666666777777777777777777776654

Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....

>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins

Probab=92.92  E-value=14  Score=38.72  Aligned_cols=62  Identities=10%  Similarity=0.156  Sum_probs=43.0

Q ss_pred             hHHHHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHH
Q 004600          669 RQIVIESLRKRLEEETEAFRRHCLQVREKSLGSLKLRLPDLFRAVSDFAHASFDAYEKLRSI  730 (743)
Q Consensus       669 kk~~le~lrkrleeE~~~h~k~v~~tr~~tl~sLq~gLp~VFqAl~~Fs~~~~~aye~l~~~  730 (743)
                      .+..+......++.-+..|..++..++..--.-....||.||+.|..|=...++.+.++...
T Consensus       166 ~~~k~~k~~~~~~~a~~~Y~~~l~~~N~~~~~~y~~~~p~~~~~~q~le~~ri~~~k~~l~~  227 (251)
T cd07653         166 AKANANLKTQAAEEAKNEYAAQLQKFNKEQRQHYSTDLPQIFDKLQELDEKRINRTVELLLQ  227 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            34445555555666778898888888665555567899999998887777766666665443

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l

>cd07680 F-BAR_PACSIN1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 1 (PACSIN1)

Probab=91.37  E-value=24  Score=38.09  Aligned_cols=60  Identities=8%  Similarity=0.139  Sum_probs=43.6

Q ss_pred             chhhhHHHHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhcccHHHHHHHHHHHHHHHHHHH
Q 004600          665 PVLDRQIVIESLRKRLEEETEAFRRHCLQVREKSLGSLKLRLPDLFRAVSDFAHASFDAYE  725 (743)
Q Consensus       665 ~v~ekk~~le~lrkrleeE~~~h~k~v~~tr~~tl~sLq~gLp~VFqAl~~Fs~~~~~aye  725 (743)
                      -+..-+..++.++.-+++-+..|...+...... -..-..-+|.||+.+-.|=..-+.-+.
T Consensus       169 q~eK~~~k~~k~~~~~~~sk~~Y~~~l~~ln~~-~~~y~~~m~~vfd~~Q~~Ee~Ri~flk  228 (258)
T cd07680         169 QQKKLQDKVDKCKQDVQKTQEKYEKVLDDVGKT-TPQYMENMEQVFEQCQQFEEKRLVFLK  228 (258)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344445678888888999999999999999766 466777888888877665444443333

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 1 or Syndapin I is expressed specifically in the brain and is localized in neurites and synaptic boutons. It binds the brain-specific proteins dynamin I, synaptojanin, synapsin I, and neural Wiskott-Aldrich syndrome protein (nWASP), and functions as a link between the cytoskeletal machinery and synaptic vesicle endocytosis. PACSIN 1 interacts with huntingtin and may be implicated in the neuropatholog

>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]

Probab=90.20  E-value=0.43  Score=54.09  Aligned_cols=24  Identities=13%  Similarity=0.105  Sum_probs=18.2

Q ss_pred             HhhHhhHHHHHHhhhhhhhhhccC
Q 004600           35 ASGHSGYSFALKNVGAALSDFAHG   58 (743)
Q Consensus        35 AAaH~~Y~~sLr~tgaALrdFaeg   58 (743)
                      -.-|..+.+++.+.=..|+.|...
T Consensus       182 D~~hveWvKa~l~l~~eL~~YVk~  205 (480)
T KOG2675|consen  182 DPRHVEWVKAYLALFLELQAYVKE  205 (480)
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHH
Confidence            345778888888888888888765

>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function

Probab=90.11  E-value=0.65  Score=49.63  Aligned_cols=15  Identities=13%  Similarity=0.186  Sum_probs=8.5

Q ss_pred             CCCchhhhccCCCcc
Q 004600           97 FSPSPIKRAASLPVI  111 (743)
Q Consensus        97 ~sp~pl~r~~s~p~~  111 (743)
                      +++.+++++.+++++
T Consensus       198 pp~~~l~~s~s~~~l  212 (253)
T PF05308_consen  198 PPPPSLQPSCSAIDL  212 (253)
T ss_pred             CCccccCcccchHHH
Confidence            334447777766643

>cd07675 F-BAR_FNBP1L The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 1-Like

Probab=88.52  E-value=39  Score=36.37  Aligned_cols=130  Identities=8%  Similarity=0.136  Sum_probs=71.3

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHH-------HHHHhhhhcccchhhhccCCCCCCCCch
Q 004600          595 AKSAISSFAAVIKTIMLHQEEE-MKLKEKCEETRKELLRKTHAYE-------EWHRKYKKTHSEESEAERGDDANTRDPV  666 (743)
Q Consensus       595 v~~AIksF~~~v~~i~~~Q~eE-~kqk~k~e~~~KeleKK~~~l~-------~~~~k~~~~~~~~~~~~~~~~~~~~~~v  666 (743)
                      |+..|..|+..+......+-.+ .+..+-.+..-++|+|-.+.++       ...+++....        .+....+..+
T Consensus        93 v~~~l~~~~~~l~~~rk~~~~~~~klqk~l~~~~~~leksKk~Y~~acke~E~A~~k~~ka~--------~d~~~tk~~~  164 (252)
T cd07675          93 VYGELMRYSHDLKGERKMHLQEGRKAQQYLDMCWKQMDNSKKKFERECREAEKAQQSYERLD--------NDTNATKSDV  164 (252)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------cCcccCHHHH
Confidence            5556677777777766666332 2222223333333333333332       2222221100        1111122333


Q ss_pred             hhhHHHHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004600          667 LDRQIVIESLRKRLEEETEAFRRHCLQVREKSLGSLKLRLPDLFRAVSDFAHASFDAYEKLRSITQ  732 (743)
Q Consensus       667 ~ekk~~le~lrkrleeE~~~h~k~v~~tr~~tl~sLq~gLp~VFqAl~~Fs~~~~~aye~l~~~s~  732 (743)
                      ..-+..++....-.|+-+..|...+..++...----..-||.||+-|-+|-..-+.-+.+++..+.
T Consensus       165 eK~k~~~~~~~q~~e~aKn~Y~~~L~~~N~~q~k~Y~e~mP~vfd~lQ~leE~Ri~~l~e~~~~~~  230 (252)
T cd07675         165 EKAKQQLNLRTHMADESKNEYAAQLQNFNGEQHKHFYIVIPQIYKQLQEMDERRTVKLSECYRGFA  230 (252)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444555555567778899999999854444444455999999999988877777777766543

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FormiN Binding Protein 1-Like (FNBP1L), also known as Toca-1 (Transducer of Cdc42-dependent actin assembly), forms a complex with neural Wiskott-Aldrich syndrome protein (N-WASP). The FNBP1L/N-WASP complex induces the formation of filopodia and endocytic vesicles. FNBP1L is required for Cdc42-induced actin assembly and is essential for autophagy of intracellular pathogens. It contains an N-terminal F-BAR domain, a central Cdc42-binding HR1 domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.

>cd07671 F-BAR_PSTPIP1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 1

Probab=88.29  E-value=39  Score=35.99  Aligned_cols=143  Identities=11%  Similarity=0.144  Sum_probs=77.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhccccccCcccCCCCCCCCCCCCcHHHHHHHHHHHhcc---CCh--HHHHHHHHHHH
Q 004600          529 HTEFEKFVNHQKQFIQALTSWLKLNLIPIESSLKERVTSPPRAPNPPIQALLHSWHDYLEK---LPD--EIAKSAISSFA  603 (743)
Q Consensus       529 ~ssF~~~I~~Qk~YV~aLn~WL~l~l~p~e~~~~~~~~Sp~r~~aPpIf~lC~~W~~aLdr---lpd--k~v~~AIksF~  603 (743)
                      ...|..=+..-++|-+.|..|-++.+-                 ...+..+...|...+.-   +.+  ..+...|.+-+
T Consensus        25 ~~f~keRa~iE~~Yak~L~kl~kk~~~-----------------~~e~gTl~~a~~~~~~e~e~~a~~H~~ia~~L~~~~   87 (242)
T cd07671          25 EELLKQRAQAEERYGKELVQIARKAGG-----------------QTEINTLKASFDQLKQQIENIGNSHIQLAGMLREEL   87 (242)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccC-----------------cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344556677889999999999998541                 11246788888776633   221  33444455544


Q ss_pred             HHHHHHHHhhHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhccCCCCCCCCchhh
Q 004600          604 AVIKTIMLHQEEEMK---------------LKEKCEETRKELLRKTHAYEEWHRKYKKTHSEESEAERGDDANTRDPVLD  668 (743)
Q Consensus       604 ~~v~~i~~~Q~eE~k---------------qk~k~e~~~KeleKK~~~l~~~~~k~~~~~~~~~~~~~~~~~~~~~~v~e  668 (743)
                      .-|..+...|.++.+               +-++++...|.|+..-+..+...+.+...         .... ....+..
T Consensus        88 ~~l~~f~~~qke~rK~~e~~~eK~qk~~~~~~k~l~ksKk~Ye~~Cke~~~a~q~~~k~---------~~~~-t~keleK  157 (242)
T cd07671          88 KSLEEFRERQKEQRKKYEAVMERVQKSKVSLYKKTMESKKTYEQRCREADEAEQTFERS---------SSTG-NPKQSEK  157 (242)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------hccC-CHHHHHH
Confidence            334555555544322               22334444555555554444432221100         0111 1122444


Q ss_pred             hHHHHHHHHHhhHHHHHHHHHHHHHHhhhh
Q 004600          669 RQIVIESLRKRLEEETEAFRRHCLQVREKS  698 (743)
Q Consensus       669 kk~~le~lrkrleeE~~~h~k~v~~tr~~t  698 (743)
                      -+.++..++..++.-+..|..+|......+
T Consensus       158 ~~~K~~k~~~~~~~a~~~Y~~~v~~l~~~~  187 (242)
T cd07671         158 SQNKAKQCRDAATEAERVYKQNIEQLDKAR  187 (242)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            556667777777778889998888654433

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 1 (PSTPIP1), also known as CD2 Binding Protein 1 (CD2BP1), is mainly expressed in hematopoietic cells. It is a binding partner of the cell surface receptor CD2 and PTP-PEST, a tyrosine phosphatase which functions in cell motility and Rac1 regulation. It also plays a role in the activation of the Wiskott-Aldrich syndrome protein (WASP), which couples actin rearrangement and T cell activation. Mutations in the gene encoding PSTPIP1 cause the autoinflammatory disorder known as PAPA (pyogenic sterile arthritis, pyoderma gangrenosum, and acne) syndrome. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain. F-BAR

>PF01213 CAP_N: Adenylate cyclase associated (CAP) N terminal; InterPro: IPR013992 Cyclase-associated proteins (CAPs) are highly conserved actin-binding proteins present in a wide range of organisms including yeast, fly, plants, and mammals

Probab=87.17  E-value=0.32  Score=53.35  Aligned_cols=23  Identities=13%  Similarity=0.222  Sum_probs=15.8

Q ss_pred             hhHhhHHHHHHhhhhhhhhhccC
Q 004600           36 SGHSGYSFALKNVGAALSDFAHG   58 (743)
Q Consensus        36 AaH~~Y~~sLr~tgaALrdFaeg   58 (743)
                      ..|..+.+++.+.=.+|++|...
T Consensus       179 ~~hveWvks~~~l~~~L~~YVke  201 (312)
T PF01213_consen  179 PKHVEWVKSFKALLKELQAYVKE  201 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHHHHH
Confidence            45777777777777777777543

CAPs are multifunctional proteins that contain several structural domains. CAP is involved in species-specific signalling pathways [, , , ]. In Drosophila, CAP functions in Hedgehog-mediated eye development and in establishing oocyte polarity. In Dictyostelium (slim mold), CAP is involved in microfilament reorganisation near the plasma membrane in a PIP2-regulated manner and is required to perpetuate the cAMP relay signal to organise fruitbody formation. In plants, CAP is involved in plant signalling pathways required for co-ordinated organ expansion. In yeast, CAP is involved in adenylate cyclase activation, as well as in vesicle trafficking and endocytosis. In both yeast and mammals, CAPs appear to be involved in recycling G-actin monomers from ADF/cofilins for subsequent rounds of filament assembly [, ]. In mammals, there are two different CAPs (CAP1 and CAP2) that share 64% amino acid identity. All CAPs appear to contain a C-terminal actin-binding domain that regulates actin remodelling in response to cellular signals and is required for normal cellular morphology, cell division, growth and locomotion in eukaryotes. CAP directly regulates actin filament dynamics and has been implicated in a number of complex developmental and morphological processes, including mRNA localisation and the establishment of cell polarity. Actin exists both as globular (G) (monomeric) actin subunits and assembled into filamentous (F) actin. In cells, actin cycles between these two forms. Proteins that bind F-actin often regulate F-actin assembly and its interaction with other proteins, while proteins that interact with G-actin often control the availability of unpolymerised actin. CAPs bind G-actin. In addition to actin-binding, CAPs can have additional roles, and may act as bifunctional proteins. In Saccharomyces cerevisiae (Baker's yeast), CAP is a component of the adenylyl cyclase complex (Cyr1p) that serves as an effector of Ras during normal cell signalling. S. cerevisiae CAP functions to expose adenylate cyclase binding sites to Ras, thereby enabling adenylate cyclase to be activated by Ras regulatory signals. In Schizosaccharomyces pombe (Fission yeast), CAP is also required for adenylate cyclase activity, but not through the Ras pathway. In both organisms, the N-terminal domain is responsible for adenylate cyclase activation, but the S cerevisiae and S. pombe N-termini cannot complement one another. Yeast CAPs are unique among the CAP family of proteins, because they are the only ones to directly interact with and activate adenylate cyclase []. S. cerevisiae CAP has four major domains. In addition to the N-terminal adenylate cyclase-interacting domain, and the C-terminal actin-binding domain, it possesses two other domains: a proline-rich domain that interacts with Src homology 3 (SH3) domains of specific proteins, and a domain that is responsible for CAP oligomerisation to form multimeric complexes (although oligomerisation appears to involve the N- and C-terminal domains as well). The proline-rich domain interacts with profilin, a protein that catalyses nucleotide exchange on G-actin monomers and promotes addition to barbed ends of filamentous F-actin []. Since CAP can bind profilin via a proline-rich domain, and G-actin via a C-terminal domain, it has been suggested that a ternary G-actin/CAP/profilin complex could be formed. This entry represents the N-terminal domain of CAP proteins. This domain has an all-alpha structure consisting of six helices in a bundle with a left-handed twist and an up-and-down topology [].; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1TJF_B 1S0P_A.

>cd07598 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of Family with sequence similarity 92 (FAM92)

Probab=87.15  E-value=42  Score=35.13  Aligned_cols=177  Identities=14%  Similarity=0.202  Sum_probs=102.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc--cccCcccCCCCCCCCCCCCcHHHHHHHHHHHhccCC--
Q 004600          516 ERTEELFTVVQKWHTEFEKFVNHQKQFIQALTSWLKLNLI--PIESSLKERVTSPPRAPNPPIQALLHSWHDYLEKLP--  591 (743)
Q Consensus       516 ~aT~qLE~el~~W~ssF~~~I~~Qk~YV~aLn~WL~l~l~--p~e~~~~~~~~Sp~r~~aPpIf~lC~~W~~aLdrlp--  591 (743)
                      +..-.||.-+...|+.|..|+...+.+-.++-.--+-+..  -.|              +|.+-.-...|...+.+|.  
T Consensus        11 ~~i~~lE~hl~~l~~~~~~lv~k~~~L~~~~~~fak~~~~la~~E--------------~~~L~~~L~~lae~~~~i~d~   76 (211)
T cd07598          11 ERITNVEKHFGELCQDFAAYTRKTARLRDKGDELAKSINAYADTE--------------NPSLKQGLKNFAECLAALQDY   76 (211)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcc--------------CHHHHHHHHHHHHHHHHHHHH
Confidence            4556789999999999999999999998887776653221  111              3445566666666666666  


Q ss_pred             --------hHHHHHHHHHHHHHHHHHH-------HhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhcccchhhhc
Q 004600          592 --------DEIAKSAISSFAAVIKTIM-------LHQEEEMKLKEKCEETRKELLR-KTHAYEEWHRKYKKTHSEESEAE  655 (743)
Q Consensus       592 --------dk~v~~AIksF~~~v~~i~-------~~Q~eE~kqk~k~e~~~KeleK-K~~~l~~~~~k~~~~~~~~~~~~  655 (743)
                              ...+++-|+.|...|.++-       ..|..+.+++.+.+.+. .-.+ -...+.+|+.             
T Consensus        77 ~q~qv~~l~~~v~epLk~Y~~l~k~~k~~~K~~~~ar~~~~~~~~~leklk-~~~~~d~~~i~eaE~-------------  142 (211)
T cd07598          77 RQAEVERLEAKVVQPLALYGTICKHARDDLKNTFTARNKELKQLKQLEKLR-QKNPSDRQIISQAES-------------  142 (211)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCchhhHHHHHHH-------------
Confidence                    2334455555555443221       23333333333222220 0000 0000011111             


Q ss_pred             cCCCCCCCCchhhhHHHHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 004600          656 RGDDANTRDPVLDRQIVIESLRKRLEEETEAFRRHCLQVREKSLGSLKLRLPDLFRAVSDFAHASFDAYEKLRSITQSQN  735 (743)
Q Consensus       656 ~~~~~~~~~~v~ekk~~le~lrkrleeE~~~h~k~v~~tr~~tl~sLq~gLp~VFqAl~~Fs~~~~~aye~l~~~s~~~~  735 (743)
                               .|..=+...+...+.+++|+.++.+.       -+.-|+..|-....++..|....++.|-.++....+.|
T Consensus       143 ---------~l~~a~~d~~r~s~~l~ee~~rFe~~-------k~~d~K~~l~~fv~~~m~~~~kale~~~~~~~~~~~~~  206 (211)
T cd07598         143 ---------ELQKASVDANRSTKELEEQMDNFEKQ-------KIRDIKTIFSDFVLIEMLFHAKALEVYTAAYQDIQNID  206 (211)
T ss_pred             ---------HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence                     11222224445555666666666643       24678888999999999999999998888887766654


Q ss_pred             C
Q 004600          736 S  736 (743)
Q Consensus       736 ~  736 (743)
                      .
T Consensus       207 ~  207 (211)
T cd07598         207 E  207 (211)
T ss_pred             c
Confidence            3

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins from the family with sequence similarity 92 (FAM92), which were originally identified by the presence of the unknown domain DUF1208. This domain shows similarity to the BAR domains of sorting nexins. Mammals contain at least two member types, FAM92A and FAM92B, which may exist in many variants. The Xenopus homolog of FAM92A1, xVAP019, is essential for embryo survival and cell differentiation. FAM92A1 may be involved in regulating cell proliferation and apoptosis. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function

Probab=87.13  E-value=1.8  Score=46.31  Aligned_cols=27  Identities=22%  Similarity=0.204  Sum_probs=12.7

Q ss_pred             ccchHHHHHHhHHHHHHHHHHHHHhHHHHh
Q 004600            7 KIDNEEAVARSKDRRNLMKDAVSARNAFAS   36 (743)
Q Consensus         7 kve~e~~v~rckeRkr~~k~av~aR~~fAA   36 (743)
                      +.-+++|+++--   -|=.++...|.+.|+
T Consensus       114 ~~~~~~AlqKIs---ALEdELs~LRaQIA~  140 (253)
T PF05308_consen  114 LPANEAALQKIS---ALEDELSRLRAQIAK  140 (253)
T ss_pred             cCCCHHHHHHHH---HHHHHHHHHHHHHHH
Confidence            444666665532   233344445555443

>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]

Probab=86.99  E-value=0.39  Score=59.39  Aligned_cols=27  Identities=11%  Similarity=0.335  Sum_probs=23.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 004600          528 WHTEFEKFVNHQKQFIQALTSWLKLNL  554 (743)
Q Consensus       528 W~ssF~~~I~~Qk~YV~aLn~WL~l~l  554 (743)
                      |.-+..-|...-|+-|--|-.||-.-+
T Consensus       659 W~p~WRvWlfflRG~iPLLeRyignLv  685 (2365)
T COG5178         659 WGPQWRVWLFFLRGHIPLLERYIGNLV  685 (2365)
T ss_pred             ccHHHHHHHHHHhcccHHHHHHHhHHH
Confidence            888888899999999999999998533

>cd07604 BAR_ASAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins

Probab=86.91  E-value=44  Score=35.11  Aligned_cols=202  Identities=13%  Similarity=0.111  Sum_probs=107.4

Q ss_pred             ccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCcccCCCCCCCCCCCCcHHHHHHHHHHHh
Q 004600          508 KETTQHHHERTEELFTVVQKWHTEFEKFVNHQKQFIQALTSWLKLNLIPIESSLKERVTSPPRAPNPPIQALLHSWHDYL  587 (743)
Q Consensus       508 ~~tse~h~~aT~qLE~el~~W~ssF~~~I~~Qk~YV~aLn~WL~l~l~p~e~~~~~~~~Sp~r~~aPpIf~lC~~W~~aL  587 (743)
                      +...+.|+.....|-.-+...+.+-..++++++.|+.+|..-=..|+-..+..          ++  -.|.-+-.=...|
T Consensus         8 ee~l~~~~~~l~Kl~K~~k~~~~~g~~~~~~~~~F~~aL~~~g~~~~~~~~~~----------i~--~~l~kF~~~l~El   75 (215)
T cd07604           8 EESLEGDRVGLQKLKKAVKAIHNSGLAHVENELQFAEALEKLGSKALSREEED----------LG--AAFLKFSVFTKEL   75 (215)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccccCcccHH----------HH--HHHHHHHHHHHHH
Confidence            44566777777777777777888888889999999999887333232111000          00  0122222222223


Q ss_pred             ccCChHHHHHHHHHHHHHHHHHHHhhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhccCCCCCCCCc
Q 004600          588 EKLPDEIAKSAISSFAAVIKTIMLHQEEEM--KLKEKCEETRKELLRKTHAYEEWHRKYKKTHSEESEAERGDDANTRDP  665 (743)
Q Consensus       588 drlpdk~v~~AIksF~~~v~~i~~~Q~eE~--kqk~k~e~~~KeleKK~~~l~~~~~k~~~~~~~~~~~~~~~~~~~~~~  665 (743)
                      ..+-+.-+..+-..+..-+.+++.-+-...  -.|+++|..+++||+....+.+.       +..+..   .++.-+.+.
T Consensus        76 ~~~~~~L~~~~~~~i~~pL~~f~k~dL~~~k~e~KK~fdK~s~~ye~~~~k~~k~-------Kk~~~~---~~~~~r~e~  145 (215)
T cd07604          76 AALFKNLMQNLNNIIMFPLDSLLKGDLKGSKGDLKKPFDKAWKDYETKASKIEKE-------KKQLAK---EAGMIRTEI  145 (215)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------cchhhh---hhhhcchhh
Confidence            333333333444444444444444433331  34556666666666654444331       111000   000000000


Q ss_pred             -hhhhHHHHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004600          666 -VLDRQIVIESLRKRLEEETEAFRRHCLQVREKSLGSLKLRLPDLFRAVSDFAHASFDAYEKLRSIT  731 (743)
Q Consensus       666 -v~ekk~~le~lrkrleeE~~~h~k~v~~tr~~tl~sLq~gLp~VFqAl~~Fs~~~~~aye~l~~~s  731 (743)
                       ..|=-..|+.-|+......-.|--.+..+.+.---.+-..|-..|+|...|-....++++++.-+.
T Consensus       146 ~~~e~~~~l~~~R~~F~~~~~~yv~~l~~lq~kKk~e~Le~ll~~~~Aq~~fF~~G~~ll~~l~p~~  212 (215)
T cd07604         146 TGAEIAEEMEKERRMFQLQMCEYLIKVNEIKTKKGVDLLQHLVEYYHAQNSYFQDGLKVIEHFRPYI  212 (215)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence             122233667777777777777776666666655555556677788888888888888877776544

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ASAPs (ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) with similarity to ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins) in that they contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and ankyrin (ANK) repeats. However, ASAPs contain an additional C-terminal SH3 domain. ASAPs function in regulating cell growth, migration, and invasion. Vertebrates contain at least three members, ASAP1, ASAP2, and ASAP3. ASAP1 and ASAP2 shows GTPase activating protein (GAP) activity towards Arf1 and Arf5. They do not show GAP activity towards Arf6, but is able to mediate

>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]

Probab=86.65  E-value=1.5  Score=50.51  Aligned_cols=9  Identities=22%  Similarity=0.124  Sum_probs=4.1

Q ss_pred             cccccceee
Q 004600          345 HSARVMRVI  353 (743)
Q Consensus       345 ~Sskv~~~i  353 (743)
                      ...++|..+
T Consensus       536 al~~~m~ar  544 (569)
T KOG3671|consen  536 ALANLMDAR  544 (569)
T ss_pred             HHHHHHHHH
Confidence            344555443

>cd07307 BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature

Probab=85.56  E-value=22  Score=33.88  Aligned_cols=107  Identities=16%  Similarity=0.293  Sum_probs=70.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHH----HhHHHHhHHHHHHHHHHHhhhhcCCchhhhHHHHHHHHhhhhhHHHHHHhhHHHHH
Q 004600          381 TLAIVLDKMLAWEKKLFEEV----KRAELMKLEYQRKVAMLNKLKKRGSANEMLEKTKAAVAHLHTKYVVDMQTMDSSVS  456 (743)
Q Consensus       381 shssTLdKLyAWEKKLY~EV----Ka~E~lR~eyeKK~~~Lr~qd~rGad~~kidKTra~Vk~L~Tri~VaiqsvdsiS~  456 (743)
                      .....++-|..|-++.+..|    |..+..|.+||.....+.++..++.+..++..+...+.....++.-...-+-..-.
T Consensus        77 ~~~~v~~pL~~~~~~~~~~~~~~~k~~~~~~~~yd~~~~k~~~~~~~~~~~~~l~~~~~~~~~ar~~y~~~~~~~~~~l~  156 (194)
T cd07307          77 LENKVIEPLKEYLKKDLKEIKKRRKKLDKARLDYDAAREKLKKLRKKKKDSSKLAEAEEELQEAKEKYEELREELIEDLN  156 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445566666665544444    57889999999999999988777656666666666666665555544444433334


Q ss_pred             hhhccccchhhHHHHHHHHHHHHHHHHHHHH
Q 004600          457 EVNRLRDEELYPKLVALVNGMAKMWENMCIH  487 (743)
Q Consensus       457 ~I~kLRDeEL~PQL~ELi~GL~~MWk~M~ec  487 (743)
                      .+..-|-.++.+.|..+++.....|+.+++-
T Consensus       157 ~~~~~~~~~~~~~L~~~~~~q~~~~~~~~~~  187 (194)
T cd07307         157 KLEEKRKELFLSLLLSFIEAQSEFFKEVLKI  187 (194)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            4444444577888888888887777776553

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Mutations in BAR containing proteins have been linked to diseases and their inactivation in cells leads to altered membrane dynamics. A BAR domain with an additional N-terminal amphipathic helix (an N-BAR) can drive membrane curvature. These N-BAR domains are found in amphiphysins and endophilins, among others. BAR domains are also frequently found alongside domains that determine lipid specificity, such as the Pleckstrin Homology (PH) and Phox Homology (PX) domains which are present in beta centaurins (ACAPs and ASAPs) and sorting nexins, respectively. A FES-CIP4 Homology (FCH) domain together with a coiled coil region is called the F-

>cd07657 F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases

Probab=83.81  E-value=64  Score=34.27  Aligned_cols=199  Identities=13%  Similarity=0.175  Sum_probs=103.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhhccccccCcccCCCCCCCCCCCCcHHHHHHHHHHHhccC
Q 004600          515 HERTEELFTVVQKWHTEFEKF----VNHQKQFIQALTSWLKLNLIPIESSLKERVTSPPRAPNPPIQALLHSWHDYLEKL  590 (743)
Q Consensus       515 ~~aT~qLE~el~~W~ssF~~~----I~~Qk~YV~aLn~WL~l~l~p~e~~~~~~~~Sp~r~~aPpIf~lC~~W~~aLdrl  590 (743)
                      |.|-+.+-.-=..|-..+.+|    ...-++|-+.|..=-+...      .+   .+|.   ..|.+.+|..|...|+.+
T Consensus         7 h~~l~~~~~~ei~lLe~i~~F~reRa~iE~EYA~~L~~L~kq~~------k~---~~~~---~~~~s~~~~sW~~iL~et   74 (237)
T cd07657           7 HEALLKRQDAELRLLETMKKYMAKRAKSDREYASTLGSLANQGL------KI---EAGD---DLQGSPISKSWKEIMDST   74 (237)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC------cC---CCcc---cCCcChHHHHHHHHHHHH
Confidence            445555544444454444444    4567899999876543310      01   1111   123667789999998764


Q ss_pred             ChHH-------------HHHHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc--cchhhh
Q 004600          591 PDEI-------------AKSAISSFAAVIKTIMLHQEEE-MKLKEKCEETRKELLRKTHAYEEWHRKYKKTH--SEESEA  654 (743)
Q Consensus       591 pdk~-------------v~~AIksF~~~v~~i~~~Q~eE-~kqk~k~e~~~KeleKK~~~l~~~~~k~~~~~--~~~~~~  654 (743)
                      -+-.             +...|..+......+..+..++ .++....+...+||+|..+.++...+-....+  ..... 
T Consensus        75 e~~A~~~~~~ae~l~~~i~~~l~~l~~~~~~~rK~~~~~~~kl~~el~~~~~el~k~Kk~Y~~~~~e~e~Ar~k~e~a~-  153 (237)
T cd07657          75 DQLSKLIKQHAEALESGTLDKLTLLIKDKRKAKKAYQEERQQIDEQYKKLTDEVEKLKSEYQKLLEDYKAAKSKFEEAV-  153 (237)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence            3321             1223444445555554444333 23344444555556555555544322111110  00000 


Q ss_pred             ccCCCCCCCCchhhhHHHHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHH
Q 004600          655 ERGDDANTRDPVLDRQIVIESLRKRLEEETEAFRRHCLQVREKSLGSLKLRLPDLFRAVSDFAHASFDAYEKLR  728 (743)
Q Consensus       655 ~~~~~~~~~~~v~ekk~~le~lrkrleeE~~~h~k~v~~tr~~tl~sLq~gLp~VFqAl~~Fs~~~~~aye~l~  728 (743)
                        ......+-.|...+..+.....++..-+..|.-++..++..--.-...-||.||..|-++--....+..++.
T Consensus       154 --~~~~~~~~~~eKak~k~~~~~~k~~~akNeY~l~l~~aN~~q~~yY~~~lP~ll~~lQ~l~E~ri~~~k~~l  225 (237)
T cd07657         154 --VKGGRGGRKLDKARDKYQKACRKLHLCHNDYVLALLEAQEHEEDYRTLLLPGLLNSLQSLQEEFITQWKKIL  225 (237)
T ss_pred             --hhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              000001112233344444444455666667777777777666677778899999999887777666655543

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), and Fer (Fes related) are cytoplasmic (or nonreceptor) tyrosine kinases that play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Although Fes and Fer show redundancy in their biological functions, they show differences in their expression patterns. Fer is ubiquitously expressed while Fes is expressed predominantly in myeloid and endothelial cells. Fes and Fer contain an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a posit

>cd07672 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 2

Probab=82.32  E-value=73  Score=33.88  Aligned_cols=182  Identities=9%  Similarity=0.044  Sum_probs=93.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCcccCCCCCCCCCCCCcHHHHHHHHHHHhcc---CCh
Q 004600          516 ERTEELFTVVQKWHTEFEKFVNHQKQFIQALTSWLKLNLIPIESSLKERVTSPPRAPNPPIQALLHSWHDYLEK---LPD  592 (743)
Q Consensus       516 ~aT~qLE~el~~W~ssF~~~I~~Qk~YV~aLn~WL~l~l~p~e~~~~~~~~Sp~r~~aPpIf~lC~~W~~aLdr---lpd  592 (743)
                      +-..++-.+|..+   |..=+..-++|.+.|..|-+++..                |.+.+=.|+..|...+.-   +..
T Consensus        15 ~~g~~~~~el~~f---~kERA~IE~~YaK~L~kLskk~~~----------------g~~E~GTl~~sw~~~~~E~e~~a~   75 (240)
T cd07672          15 NDGRKNCKEFEDF---LKERASIEEKYGKELLNLSKKKPC----------------GQTEINTLKRSLDVFKQQIDNVGQ   75 (240)
T ss_pred             HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhcCC----------------CCcccchHHHHHHHHHHHHHHHHH
Confidence            3344554455443   334567789999999999997531                011222777888765433   222


Q ss_pred             --HHHHHHHHHHHHHHHHHHHhhHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhc
Q 004600          593 --EIAKSAISSFAAVIKTIMLHQEEEMK---------------LKEKCEETRKELLRKTHAYEEWHRKYKKTHSEESEAE  655 (743)
Q Consensus       593 --k~v~~AIksF~~~v~~i~~~Q~eE~k---------------qk~k~e~~~KeleKK~~~l~~~~~k~~~~~~~~~~~~  655 (743)
                        ..+++.|..-+.-|..+...|.++.+               +-++++...+.|++..+..+...+.+. .        
T Consensus        76 ~H~~la~~L~~~~~~~~~f~~~qk~~rKk~e~~~ek~~K~~~~~~k~~~ksKk~Ye~~Cke~~~a~~~~~-~--------  146 (240)
T cd07672          76 SHIQLAQTLRDEAKKMEDFRERQKLARKKIELIMDAIHKQRAMQFKKTMESKKNYEQKCRDKDEAEQAVN-R--------  146 (240)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-h--------
Confidence              23444555444445555444444322               122333444444444443333222211 0        


Q ss_pred             cCCCCCCCCchhhhHHHHHHHHHhhHHHHHHHHHHHHHHhhhhh---hhhhcccHHHHHHHHH----HHHHHHHHHHHH
Q 004600          656 RGDDANTRDPVLDRQIVIESLRKRLEEETEAFRRHCLQVREKSL---GSLKLRLPDLFRAVSD----FAHASFDAYEKL  727 (743)
Q Consensus       656 ~~~~~~~~~~v~ekk~~le~lrkrleeE~~~h~k~v~~tr~~tl---~sLq~gLp~VFqAl~~----Fs~~~~~aye~l  727 (743)
                       .+.......+..-+.+|+.++..++.-...|..+|......+.   .... ..=.+||.|+.    |...++=.|-++
T Consensus       147 -~~~~~~~ke~~K~~~Kl~K~~~~~~k~~~~Y~~~v~~l~~~~~~w~~~~~-~~c~~fq~lEeeRi~f~k~~lw~~~n~  223 (240)
T cd07672         147 -NANLVNVKQQEKLFAKLAQSKQNAEDADRLYMQNISVLDKIREDWQKEHV-KACEFFEKQECERINFFRNAVWTHVNQ  223 (240)
T ss_pred             -ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence             0000111122233467788888888888899999888765542   1111 33456776663    555555555443

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 2 (PSTPIP2), also known as Macrophage Actin-associated tYrosine Phosphorylated protein (MAYP), is mostly expressed in hematopoietic cells but is also expressed in the brain. It is involved in regulating cell adhesion and motility. Mutations in the gene encoding murine PSTPIP2 can cause autoinflammatory disorders such as chronic multifocal osteomyelitis and macrophage autoinflammatory disease. PSTPIP2 contains an N-terminal F-BAR domain and lacks the PEST motifs and SH3 domain that are found in PSTPIP1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They ca

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	743
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-12
2v8f_C	26	MDIA1, profilin IIA; alternative splicing, protein	2e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 68.0 bits (165), Expect = 8e-12
 Identities = 94/601 (15%), Positives = 178/601 (29%), Gaps = 142/601 (23%)

Query: 222 HMENVNANDNVFSNKTTINSNIKNNISIDSNKNVDDFMKN-----DGDINVSVPEKVEG- 275
           HM+     ++ +  K  ++      +     K+V D  K+     + D  +   + V G 
Sbjct: 6   HMD-FETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGT 64

Query: 276 KVVIEHASTAPAEFVSKRAIATVSLMKVLNQIDDHFLKASQSAKDVSNMLEANRLHYHSN 335
             +     +   E V K        ++ + +I+  FL +    +     +         +
Sbjct: 65  LRLFWTLLSKQEEMVQK-------FVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD 117

Query: 336 --FADNRALIDHSARVMRVITWNRSFRGLGLPHAEIERNEADLEDYETLAIVLDKMLAWE 393
             + DN+    ++  V R                 ++  +A LE      +++D +L   
Sbjct: 118 RLYNDNQVFAKYN--VSR-------------LQPYLKLRQALLELRPAKNVLIDGVLGSG 162

Query: 394 KK-LFEEVKRAELMKLEYQRKVAMLNKLKKRGSANEMLEKTKAAVAHLHTKYVV------ 446
           K  +  +V  +  ++ +   K+  LN LK   S   +LE  +  +  +   +        
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIFWLN-LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS 221

Query: 447 -DMQTMDSSVSEVNRLRDEELYPK-LVAL--VNGMAKMWENM---C----IHHDSQLT-- 493
                + S  +E+ RL   + Y   L+ L  V   AK W      C         Q+T  
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN-AKAWNAFNLSCKILLTTRFKQVTDF 280

Query: 494 -IVSELKPLDIAHAVKETTQHHHERTEELFTVVQKW-HTEFEK---------------FV 536
              +    + + H     T    +  + L     K+     +                  
Sbjct: 281 LSAATTTHISLDHHSMTLT---PDEVKSLLL---KYLDCRPQDLPREVLTTNPRRLSIIA 334

Query: 537 NHQKQFIQALTSWLKLNLIP----IESSLKERVTSP-------------PRAPNPPIQAL 579
              +  +    +W  +N       IESSL   V  P             P + + P   L
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLTTIIESSLN--VLEPAEYRKMFDRLSVFPPSAHIPTILL 392

Query: 580 LHSWHDYLEKLPDEIAKSAISSFAAVIK-----TIMLHQEEEMKLKEKCEETRKELLRKT 634
              W D ++     +    +  ++ V K     TI +     ++LK K E     L    
Sbjct: 393 SLIWFDVIKSDVMVVVNK-LHKYSLVEKQPKESTISIPS-IYLELKVKLEN-EYAL---- 445

Query: 635 HAYEEWHRK----YKKTHSEESEAERGDDANTRDPVLDRQIVIESL-----RKRLEEETE 685
                 HR     Y           +  D++   P    Q     +          E   
Sbjct: 446 ------HRSIVDHYNIP--------KTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMT 491

Query: 686 AFRRHCLQVR--EKSLGSLKLRLPDL-FRAVSDFAH--ASFDAYEKLRSITQSQNSNGGR 740
            FR   L  R  E+     K+R     + A     +       Y+    I  +       
Sbjct: 492 LFRMVFLDFRFLEQ-----KIRHDSTAWNASGSILNTLQQLKFYKPY--ICDNDPKYERL 544

Query: 741 V 741
           V
Sbjct: 545 V 545

>2v8f_C MDIA1, profilin IIA; alternative splicing, protein-binding, cytoplasm, acetylation, cytoskeleton, actin-binding; 1.1A {Mus musculus} Length = 26

 Score = 38.1 bits (88), Expect = 2e-04
 Identities = 13/20 (65%), Positives = 16/20 (80%), Gaps = 1/20 (5%)

Query: 76 PPPPPLSSLDTLPPPPPPLP 95
          PPPPPL  + ++ PPPPPLP
Sbjct: 2  PPPPPLPGVASI-PPPPPLP 20

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	743
d1urua_	217	Amphiphysin {Fruit fly (Drosophila melanogaster) [	85.26

>d1urua_ a.238.1.1 (A:) Amphiphysin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: BAR domain
domain: Amphiphysin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=85.26  E-value=0.89  Score=20.80  Aligned_cols=193  Identities=11%  Similarity=0.111  Sum_probs=101.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHH
Q ss_conf             89799999999999998998999899999999997440044456766677899999999919999999999751289078
Q 004600          515 HERTEELFTVVQKWHTEFEKFVNHQKQFIQALTSWLKLNLIPIESSLKERVTSPPRAPNPPIQALLHSWHDYLEKLPDEI  594 (743)
Q Consensus       515 ~~aT~qLE~el~~W~~sF~~~I~~Qk~YV~aLn~WL~l~l~p~e~~~~~~~~SP~r~~aPpIf~lC~~W~~aldrlpdk~  594 (743)
                      .+....++..+...+..+.+|+++.+.+..+...+-.-.....+ ..+... +    ....++..|......+...-+..
T Consensus        18 ~~~~~~~e~~l~~l~k~~~~~~~~~~~~~~~~~~~~~~l~~l~~-~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~   91 (217)
T d1urua_          18 LNNFNRQQASANRLQKEFNNYIRCVRAAQAASKTLMDSVCEIYE-PQWSGY-D----ALQAQTGASESLWADFAHKLGDQ   91 (217)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC-TTSTTH-H----HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCHH-H----HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999999999999999999999999756-676257-7----99999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCHHHHHHHHH
Q ss_conf             99999999999999999569999999977999999999779999999862101552011014999899890146689999
Q 004600          595 AKSAISSFAAVIKTIMLHQEEEMKLKEKCEETRKELLRKTHAYEEWHRKYKKTHSEESEAERGDDANTRDPVLDRQIVIE  674 (743)
Q Consensus       595 v~~AIksF~~~i~~i~~~Q~eE~kqk~k~e~~~KelekK~~~l~~~~~k~~~~~~~~~~~~~~~~~~~~~~v~ekk~~le  674 (743)
                      |.+.++.|...+..+       .+..++.+....||++-...+.....+....          ...   .-+.+-...++
T Consensus        92 v~~pL~~~~~~~~~~-------~~~~kkr~~~~~dyd~~~~~l~k~~~k~~~~----------~~~---~~l~~~e~~~~  151 (217)
T d1urua_          92 VLIPLNTYTGQFPEM-------KKKVEKRNRKLIDYDGQRHSFQNLQANANKR----------KDD---VKLTKGREQLE  151 (217)
T ss_dssp             THHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHTTTCBT----------TBC---CTTTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC----------CCH---HHHHHHHHHHH
T ss_conf             999999999986899-------9999999999999999999999987421454----------202---12677999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99884599999999888997651003220255899999999999999999999977210
Q 004600          675 SLRKRLEEETEAFRRHCLQVREKSLGSLKLRLPDLFRAVSDFAHASFDAYEKLRSITQS  733 (743)
Q Consensus       675 ~lrkrleeE~~~~~~~~~~tr~~tl~sLq~gLp~vFqAl~~Fs~~~~~aye~l~~~s~~  733 (743)
                      ..++..+.-...+...+.........-+...|...+.+...|...+.+.|++|..+..+
T Consensus       152 ~a~~~fe~~~~~l~~el~~~~~~~~~~~~~~l~~~~~~q~~~~~~~~~~~~~l~~~~~~  210 (217)
T d1urua_         152 EARRTYEILNTELHDELPALYDSRILFLVTNLQTLFATEQVFHNETAKIYSELEAIVDK  210 (217)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999997899999999999999999999999999999999987