Citrus Sinensis ID: 004603

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740---
Protein Sequence
MSQNNWEADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSESAASYIESQVIKAREQQQQQQQQHQKPQQHQQMQVQQLLLQRHAQQQQQQQRRDSTQHLNDTGDDLRPGFAKAFTTKMYEDRLKKLPFQRDSLDDATIKPRLSDNMTQLLDPNHATLLKAAAIGSQPSGQTLHGTHGVSQQVQSRSQQPPLSTQEVKTEMNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLKGWPLTGLDQFRSGLLQQQKSLTQPYNQLQLQQLMLQAQQNLASPSANDLESRKLRMLHNSRNMGLARDGSSNSVGDLVSTVGSAMQIISPGLPRGDNDLLIKIQQQQQQLQHYSHHPLSSQQSQNSNPLLQQQDKILAGGSMTMDGSMSNTFQGNDQASKNQIGRKRKQAVSSSGPANSSGTANTPGPTPSSPSSPSTHTPGDVISRPTLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNLMPIILKGCFILNSIFNCYLLLHRIFLNLLSVSEWCNPDEISTSSWKDSCCSHRELYLYT
Secondary Structure (PSIPRED)
cccccccccccccEEHHHHHHHHHHHHHHHHHHHcccccccccEEccccccHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHccccccccccccccccccHHHcccccccccccccccccccccccccccccccEEEccccccccccEEEcccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccEEEEEEEEccccEEEccccccccEEEEEccccccEEEcccccccEEEEEccccccccccccccEEccccccccEEccccccccEEEEEEccccEEEEEEccccccccccccccccccEEEEEEcccccccccccEEEEEcccccccccccccccccccEEEEEEcccccEEEEccccccEEEEEcccccEEcccccccccEEEEEEcccccEEEEccccccEEEEEcccccccccccccccccEEEEEEccccccEEEEEcccccEEEEEcccccEEEEEEEEcEEEEcccccEEEEEcccccEEEEEccccEEEEEccccccEEEEEEEccccccccEEEEcc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHcccccHcccccHHHHHHcccccccccccEEEcccccHHHHHHHcccccccccccccccccccccccccccccEEEccccccccccccccccccccHHHHccccHcccccccccccHHHHHHHHHHHHHHHccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccHHcccccccccccHHHHcccccccEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEcccccccEEEEcccccEEEEEccHcccccccEEEEcccccEEEEEEccccccccccEEEEEEEcccccccEEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEccccccEEEEEEcccccEEEEEEccccEEEEEEcccccEEEEEEccccccEEEEEEEcccccEEccccccccEEEEEEEcccccccEcccccEEEEEEcccccEEcc
Coil and Loop (DISEMBL)
msqnnweadKMLDVYIYDYLLKRKLHASAKAFQtegkvstdpvaidapggfLFEWWSVFWDIFIARTNEKHSESAASYIESQVIKAREQQQQQQQQHQKPQQHQQMQVQQLLLQRHAQQQQQQQRRDSTqhlndtgddlrpgfAKAFTTKMYEDRlkklpfqrdslddatikprlsdnmtqlldpNHATLLKAaaigsqpsgqtlhgthgvsqqvqsrsqqpplstqevktemnptmnpraagsegsligvhgsnqgagnvtlkgwpltgldqfRSGLLQQQKSLTQPYNQLQLQQLMLQAQQnlaspsandlesRKLRMLHnsrnmglardgssnsvgDLVSTVGSAmqiispglprgdndLLIKIQQQQQQLqhyshhplssqqsqnsnpllQQQDkilaggsmtmdgsmsntfqgndqasknqigrkrkqavsssgpanssgtantpgptpsspsspsthtpgdvisrptlqhngassksllmfgsdgmgsltsapnqltdmdrfvddgslddnvesflspddadprdrvgrsaevgkgftftefqlipastskveschfspdgkllatgghdkkAVLWCTESFTVKSTLEEHTQWitdvrfspslsrlatssadrtvrvwdtenpdyslrtftghsttvmsldfhpskedllcscdnnseirywsinngscagvfkvcnlmpiiLKGCFILNSIFNCYLLLHRIFLNLLSvsewcnpdeistsswkdsccshrelylyt
Flexible Loop (DISEMBL)
msqnnweadkMLDVYIYDYLLKRKLHASAKAFqtegkvstdpvAIDAPGGFLFEWWSVFWDIFIARTNEKHSESAASYIESQVIKAREQQQQQQQQHQKPQQHQQMQVQQLLLQRHAQQQQQQQRRDstqhlndtgddlrpGFAKAFTTKMYedrlkklpfqrdslddatikPRLSDNMTQLLDPNHATLLKAAAIGSQPSGQTLHGTHGVSQqvqsrsqqpplstQEVKTEMNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLKGWPLTGLDQFRSGLLQQQKSLTQPYNQLQLQQLMLQAQQNLASPSANDLESRKLRMLHNSRnmglardgssnsVGDLVSTVGSAMQIISPGLPRGDNDLLIKIQQQQQQLQHYSHHPLSSQQSQNSNPLLQQQDKILAGGSMTMDGSMSNTFQGNDQASKNQIGRKRKQavsssgpanssgtantpgptpsspsspSTHTPGDVISRPTLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVEsflspddadprdrVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTqwitdvrfspslsrlatssadrtvrvwdtenpdyslrtftGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNLMPIILKGCFILNSIFNCYLLLHRIFLNLLSVSEWCNPDeistsswkdsccshrelylyt
Low Complexity Region (SEG)
MSQNNWEADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSESAASYIESQVIKAREqqqqqqqqhqkpqqhqqmqvqqlllqrhaqqqqqqqrrDSTQHLNDTGDDLRPGFAKAFTTKMYEDRLKKLPFQRDSLDDATIKPRLSDNMTQLLDPNHATLLKAAAIGSQPSGQTLHGTHGvsqqvqsrsqqPPLSTQEVKTEMNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLKGWPLTGLDQFRSGLLQQQKSLTQPYnqlqlqqlmlqaqqnlaSPSANDLESRKLRMLHNSRNMGLARDGSSNSVGDLVSTVGSAMQIISPGLPRGDNDLLIKIqqqqqqlqhyshhplssqqsqnsnpllqqqDKILAGGSMTMDGSMSNTFQGNDQASKNQIGRKRKQAVSSSGPANssgtantpgptpsspsspsthtpgDVISRPTLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNLMPIILKGCFILNSIFNCYLLLHRIFLNLLSVSEWCNPDEISTSSWKDSCCSHRELYLYT
Disordered region (IsUnstruct)
*******ADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFWDIFIART**********************************************************************************************************************************************************************************************AGNVTLKGWPLTGLDQFRSGLL************************************************************************************LI******************************************************************************************************************************************************************************GKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNLMPIILKGCFILNSIFNCYLLLHRIFLNLLSVSEWCNPDEISTSSWKDSCCSHRELYL**
Disordered Region (DISOPRED)
******E*DKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFWDIFIA********************************************************************************AFTTKMYE*********************************************************************************************************GNVTLKGWPLTGLDQ***********************************************************************************************************************************SMTMDGSMSNTFQGNDQASKNQIG**************SSGTANTPGPTPSSPSSPSTHTPGDVISRPTLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNLMPIILKGCFILNSIFNCYLLLHRIFLNLLSVSEWCNPDEISTSSWKDSCCSHRELYLYT
Disordered Region (DISEMBL)
MSQNNWEADKMLDVYIYDYLLKRKLHASAKA********TDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSESAASYIESQ*************************************************LNDTGDDLRPGFAKAFTTKMYEDRLKKLPFQRDSLDDATIKPRLSDNMTQLLDPNHATLLKAAAIGSQPS*******************************MNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLKGWPLTGLDQFRSGLLQQQKSLTQPYNQLQLQQLMLQAQQNLASPSANDLESRKLRMLHNSRNMGLARDGSSNSVGDLVSTVGSAMQIISPGLPRGDNDLLIKI*************************LLQQQDKILAGGSMTMDGSMSNTFQG***********************************************GDVISRPTLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNLMPIILKGCFILNSIFNCYLLLHRIFLNLLSVSEWCNPDEISTSSWKDSCCSHRELYLYT
Disordered Region (DISPRO)
****NWEADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSESAASYIESQVIKAREQQQQQQQQHQKPQQ*********LLQRHAQQ*********************PG*********YEDRLKKLPFQRDSLDDATIKPRLSDNMTQLLDPNHATLLKAAAI****S*Q*****HGVSQQVQSRSQQP*LSTQEV*TEMNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLKGWPLTGLDQFRSGLLQQQKSLTQPYNQLQLQQLMLQAQQNLASPSANDLESRKLRMLHNSRNMGLARDGSSNSVGDLVSTVGSAMQIISPGLPRGDNDLLIKIQQQQQQ*********************************************************************************************DVISRPTLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNLMPIILKGCFILNSIFNCYLLLHRIFLNLLSVSEWCNPDEISTSSWKDSCCSHRELYL**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSQNNWEADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSESAASYIESQVIKAREQQQQQQQQHQKPQQHQQMQVQQLLLQRHAQQQQQQQRRDSTQHLNDTGDDLRPGFAKAFTTKMYEDRLKKLPFQRDSLDDATIKPRLSDNMTQLLDPNHATLLKAAAIGSQPSGQTLHGTHGVSQQVQSRSQQPPLSTQEVKTEMNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLKGWPLTGLDQFRSGLLQQQKSLTQPYNQLQLQQLMLQAQQNLASPSANDLESRKLRMLHNSRNMGLARDGSSNSVGDLVSTVGSAMQIISPGLPRGDNDLLIKIQQQQQQLQHYSHHPLSSQQSQNSNPLLQQQDKILAGGSMTMDGSMSNTFQGNDQASKNQIGRKRKQAVSSSGPANSSGTANTPGPTPSSPSSPSTHTPGDVISRPTLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNLMPIILKGCFILNSIFNCYLLLHRIFLNLLSVSEWCNPDEISTSSWKDSCCSHRELYLYT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	743	2.2.26 [Sep-21-2011]
Q9FUY2	931	Transcriptional corepress	yes	no	0.742	0.592	0.565	1e-172
Q8YRI1	1526	Uncharacterized WD repeat	yes	no	0.193	0.094	0.369	2e-17
Q15542	800	Transcription initiation	yes	no	0.187	0.173	0.342	5e-15
Q8C092	801	Transcription initiation	yes	no	0.187	0.173	0.335	1e-14
Q8YV57	1683	Uncharacterized WD repeat	no	no	0.166	0.073	0.333	4e-14
Q8W1K8	370	Protein Mut11 OS=Chlamydo	N/A	no	0.161	0.324	0.347	5e-14
Q00808	1356	Vegetative incompatibilit	no	no	0.164	0.089	0.346	1e-13
P0CS42	433	Nuclear distribution prot	yes	no	0.156	0.267	0.358	2e-13
P0CS43	433	Nuclear distribution prot	N/A	no	0.156	0.267	0.358	2e-13
Q8YTC2	1258	Uncharacterized WD repeat	no	no	0.173	0.102	0.312	3e-13

>sp|Q9FUY2|LEUNG_ARATH Transcriptional corepressor LEUNIG OS=Arabidopsis thaliana GN=LUG PE=1 SV=2

 Score =  607 bits (1565), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 337/596 (56%), Positives = 425/596 (71%), Gaps = 44/596 (7%)

Query: 125 RRDSTQHLNDTGDDL-----------RPGFAKAFTTKMYEDRLKKLPFQRDSLDDATIKP 173
           RRD +   N + + L            PG   +  +K YE+R+K +P QR+SLD+A +K 
Sbjct: 185 RRDGSHLANGSANGLVGNNSEPVMRQNPGSGSSLASKAYEERVK-MPTQRESLDEAAMK- 242

Query: 174 RLSDNMTQLLDPNHATLLKAAAIGSQPSGQTLHGTHG-VSQQVQSRSQQPPLSTQEVKTE 232
           R  DN+ QLLDP+HA++LK+AA   QP+GQ LH T G +S QVQ+R+QQ P S  ++K+E
Sbjct: 243 RFGDNVGQLLDPSHASILKSAAASGQPAGQVLHSTSGGMSPQVQTRNQQLPGSAVDIKSE 302

Query: 233 MNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLKGWPLTGLDQFRSGLLQQQKSL--TQPYN 290
           +NP + PR A  EGSLIG+ GSNQG+ N+TLKGWPLTG DQ RSGLLQQQK    +Q ++
Sbjct: 303 INPVLTPRTAVPEGSLIGIPGSNQGSNNLTLKGWPLTGFDQLRSGLLQQQKPFMQSQSFH 362

Query: 291 QLQL------QQLMLQAQQNLASPSANDLESRKLRMLHNSRNMGLARDGSSNSVGDLVST 344
           QL +      QQLML AQQNL S S ++ E+R+L+ML N+R+M L +DG  +SVGD++  
Sbjct: 363 QLNMLTPQHQQQLML-AQQNLNSQSVSE-ENRRLKMLLNNRSMTLGKDGLGSSVGDVLPN 420

Query: 345 VGSAMQIISPGLPRGDNDLLIKIQQQQQQLQHYSHH-------------------PLSSQ 385
           VGS++Q     LPRGD D+L+K++    Q Q  +                      L++ 
Sbjct: 421 VGSSLQPGGSLLPRGDTDMLLKLKMALLQQQQQNQQQGGGNPPQPQPQPQPLNQLALTNP 480

Query: 386 QSQNSNPLLQQQDKILAGGSMTMDGSMSNTFQGNDQASKNQIGRKRKQAVSSSGPANSSG 445
           Q Q+SN  + QQ+K+  GGS+TMDGS+SN+F+GN+Q  KNQ GRKRKQ VSSSGPANSSG
Sbjct: 481 QPQSSNHSIHQQEKLGGGGSITMDGSISNSFRGNEQVLKNQSGRKRKQPVSSSGPANSSG 540

Query: 446 TANTPGPTPSSPSSPST-HTPGDVISRPTLQHNGASSKSLLMFGSDGMGSLTSAPNQLTD 504
           TANT GP+PSS  S  + HTPGDVIS P L H+G SSKS++MFG++G G+LTS  NQL D
Sbjct: 541 TANTAGPSPSSAPSTPSTHTPGDVISMPNLPHSGGSSKSMMMFGTEGTGTLTSPSNQLAD 600

Query: 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFS 564
           MDRFV+DGSLDDNVESFLS +D D RD V R  +V KGFTFTE   + AST+KV  CHFS
Sbjct: 601 MDRFVEDGSLDDNVESFLSQEDGDQRDAVTRCMDVSKGFTFTEVNSVRASTTKVTCCHFS 660

Query: 565 PDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 624
            DGK+LA+ GHDKKAVLW T++   K+TLEEHT  ITD+RFSPS  RLATSS D+TVRVW
Sbjct: 661 SDGKMLASAGHDKKAVLWYTDTMKPKTTLEEHTAMITDIRFSPSQLRLATSSFDKTVRVW 720

Query: 625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 680
           D +N  YSLRTF GHS+ V SLDFHP K+DL+CSCDN++EIRYWSINNGSC  V+K
Sbjct: 721 DADNKGYSLRTFMGHSSMVTSLDFHPIKDDLICSCDNDNEIRYWSINNGSCTRVYK 776

Transcription repressor subunit of the SEU-LUG transcriptional corepressor of the C class floral homeotic gene AGAMOUS during the early stages of floral meristem development. Is part of the A class cadastral complex that define the boundaries between the A and C class homeotic genes expression and function. Interacts together with APETALA2 and SEUSS to repress AGAMOUS expression. Also plays a role in ovule and pollen development.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1

 Score = 91.7 bits (226), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 55/149 (36%), Positives = 77/149 (51%), Gaps = 5/149 (3%)

Query: 531  DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK 590
            D+  R  E+        FQ     TS V S  F+PDG +LA+G  DK   LW   S    
Sbjct: 1221 DQTVRLWEINSSKCLCTFQ---GHTSWVNSVVFNPDGSMLASGSSDKTVRLWDISSSKCL 1277

Query: 591  STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHP 650
             T + HT W+  V F+P  S LA+ S D+TVR+W+  +    L TF GH++ V S+ F P
Sbjct: 1278 HTFQGHTNWVNSVAFNPDGSMLASGSGDQTVRLWEISSSK-CLHTFQGHTSWVSSVTFSP 1336

Query: 651  SKEDLLCSCDNNSEIRYWSINNGSCAGVF 679
                +L S  ++  +R WSI++G C   F
Sbjct: 1337 DGT-MLASGSDDQTVRLWSISSGECLYTF 1364

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|Q15542|TAF5_HUMAN Transcription initiation factor TFIID subunit 5 OS=Homo sapiens GN=TAF5 PE=1 SV=3

 Score = 83.6 bits (205), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 50/146 (34%), Positives = 68/146 (46%), Gaps = 7/146 (4%)

Query: 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDV 603
           TFT           V    FSP G    +GGHD+ A LW T+ +        H   +   
Sbjct: 574 TFTCLVGYKGHNYPVWDTQFSPYGYYFVSGGHDRVARLWATDHYQPLRIFAGHLADVNCT 633

Query: 604 RFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 663
           RF P+ + +AT SADRTVR+WD  N +  +R FTGH   + SL F P+    L +   + 
Sbjct: 634 RFHPNSNYVATGSADRTVRLWDVLNGN-CVRIFTGHKGPIHSLTFSPNGR-FLATGATDG 691

Query: 664 EIRYWSINNGSCAGVFK-----VCNL 684
            +  W I +G   G  K     VC+L
Sbjct: 692 RVLLWDIGHGLMVGELKGHTDTVCSL 717

TAFs are components of the transcription factor IID (TFIID) complex, PCAF histone acetylase complex and TBP-free TAFII complex (TFTC). TAFs components-TIIFD are essential for mediating regulation of RNA polymerase transcription. TAF5/TAFII100 interacts strongly with the histone H4-related TAF6/TAFII80 and the histone H3-related TAF9/TAFII31, as well as a stable complex comprised of both TAF5/TAFII80 and TAF6/TAFII31. Apparently weaker interactions of TAF5/TAFII100 with TBP, TAF1/TAFII250, TAF11/TAFII28, and TAF12/TAFII20, but not TAF7/TAFII55, also have been observed.

Homo sapiens (taxid: 9606)

>sp|Q8C092|TAF5_MOUSE Transcription initiation factor TFIID subunit 5 OS=Mus musculus GN=Taf5 PE=2 SV=1

 Score = 82.8 bits (203), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/146 (33%), Positives = 68/146 (46%), Gaps = 7/146 (4%)

Query: 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDV 603
           TFT           V    FSP G    +GGHD+ A LW T+ +        H   +   
Sbjct: 575 TFTCLVGYKGHNYPVWDTQFSPYGYYFVSGGHDRVARLWATDHYQPLRIFAGHLADVNCT 634

Query: 604 RFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 663
           R+ P+ + +AT SADRTVR+WD  N +  +R FTGH   + SL F P+    L +   + 
Sbjct: 635 RYHPNSNYVATGSADRTVRLWDVLNGN-CVRIFTGHKGPIHSLTFSPNGR-FLATGATDG 692

Query: 664 EIRYWSINNGSCAGVFK-----VCNL 684
            +  W I +G   G  K     VC+L
Sbjct: 693 RVLLWDIGHGLMVGELKGHTDTVCSL 718

TAFs are components of the transcription factor IID (TFIID) complex, PCAF histone acetylase complex and TBP-free TAFII complex (TFTC). TAFs components-TIIFD are essential for mediating regulation of RNA polymerase transcription. TAF5/TAFII100 interacts strongly with the histone H4-related TAF6/TAFII80 and the histone H3-related TAF9/TAFII31, as well as a stable complex comprised of both TAF5/TAFII80 and TAF6/TAFII31. Apparently weaker interactions of TAF5/TAFII100 with TBP, TAF1/TAFII250, TAF11/TAFII28, and TAF12/TAFII20, but not TAF7/TAFII55, also have been observed.

Mus musculus (taxid: 10090)

>sp|Q8YV57|Y2124_NOSS1 Uncharacterized WD repeat-containing protein all2124 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=all2124 PE=4 SV=1

 Score = 80.9 bits (198), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 42/126 (33%), Positives = 70/126 (55%), Gaps = 2/126 (1%)

Query: 548  FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP 607
            F+ +      V S  FSPDG+ +A+GG DK   LW T   T+  T+  H Q + +V FSP
Sbjct: 1106 FRTLNGHEDAVYSVSFSPDGQTIASGGSDKTIKLWQTSDGTLLKTITGHEQTVNNVYFSP 1165

Query: 608  SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY 667
                LA++S+D ++++WDT +    L T TGHS  V+++ F P  + +    ++ + ++ 
Sbjct: 1166 DGKNLASASSDHSIKLWDTTSGQL-LMTLTGHSAGVITVRFSPDGQTIAAGSEDKT-VKL 1223

Query: 668  WSINNG 673
            W   +G
Sbjct: 1224 WHRQDG 1229

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|Q8W1K8|MUT11_CHLRE Protein Mut11 OS=Chlamydomonas reinhardtii GN=Mut11 PE=2 SV=1

 Score = 80.1 bits (196), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 66/121 (54%), Gaps = 1/121 (0%)

Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
           T  V +  FSPDG LLA+G  D+   LW   +    +TL  H+  ++DV ++P+   LAT
Sbjct: 40  TKAVAAVKFSPDGSLLASGSADRTVALWDAATGARVNTLAGHSCGVSDVAWNPNGRYLAT 99

Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
           ++ D ++++WD E     LRT TGH+  V   +F  +   LL S   +  +R W + +G 
Sbjct: 100 AADDHSLKLWDAET-GACLRTLTGHTNYVFCCNFDGAAGHLLASGSFDETLRLWDVRSGR 158

Query: 675 C 675
           C
Sbjct: 159 C 159

Part of a complex involved in 'Lys-4' histone H3 methylation.

Chlamydomonas reinhardtii (taxid: 3055)

>sp|Q00808|HETE1_PODAS Vegetative incompatibility protein HET-E-1 OS=Podospora anserina GN=HET-E1 PE=4 SV=1

 Score = 79.0 bits (193), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 43/124 (34%), Positives = 66/124 (53%), Gaps = 2/124 (1%)

Query: 558  VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 617
            V S  FSPDG+ +A+G  D    +W   S T   TLE H  W+  V FSP   R+A+ S+
Sbjct: 1138 VHSVAFSPDGQRVASGSIDGTIKIWDAASGTCTQTLEGHGGWVQSVAFSPDGQRVASGSS 1197

Query: 618  DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG 677
            D+T+++WDT +   + +T  GH   V S+ F P  + +     +N+ I+ W   +G+C  
Sbjct: 1198 DKTIKIWDTASGTCT-QTLEGHGGWVQSVAFSPDGQRVASGSSDNT-IKIWDTASGTCTQ 1255

Query: 678  VFKV 681
               V
Sbjct: 1256 TLNV 1259

Responsible for vegetative incompatibility through specific interactions with different alleles of the unlinked gene, het-c.

Podospora anserina (taxid: 5145)

>sp|P0CS42|LIS1_CRYNJ Nuclear distribution protein PAC1 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=PAC1 PE=3 SV=1

 Score = 78.6 bits (192), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 42/117 (35%), Positives = 64/117 (54%), Gaps = 1/117 (0%)

Query: 563 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 622
           F P   LLA+   D    LW  E+  ++ TL+ HT+ + DV F P    +AT S+D T++
Sbjct: 113 FHPTWTLLASASEDATVKLWDWEAGDMERTLKGHTKAVMDVDFDPRGGLMATCSSDLTLK 172

Query: 623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF 679
           +WDT N   +++T  GH  +V S+ F P  E L+ S   +  IR W +++G C   F
Sbjct: 173 LWDTANQYTNVKTLHGHDHSVSSVRFMPDGETLV-SASRDKTIRVWQVSSGYCIKTF 228

Positively regulates the activity of the minus-end directed microtubule motor protein dynein. Plays a central role in positioning the mitotic spindle at the bud neck during cell division. Targets cytoplasmic dynein to microtubule plus ends, thereby promoting dynein-mediated microtubule sliding along the bud cortex and consequently the movement of the mitotic spindle to the bud neck.

Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) (taxid: 214684)

>sp|P0CS43|LIS1_CRYNB Nuclear distribution protein PAC1 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=PAC1 PE=3 SV=1

 Score = 78.6 bits (192), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 42/117 (35%), Positives = 64/117 (54%), Gaps = 1/117 (0%)

Query: 563 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 622
           F P   LLA+   D    LW  E+  ++ TL+ HT+ + DV F P    +AT S+D T++
Sbjct: 113 FHPTWTLLASASEDATVKLWDWEAGDMERTLKGHTKAVMDVDFDPRGGLMATCSSDLTLK 172

Query: 623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF 679
           +WDT N   +++T  GH  +V S+ F P  E L+ S   +  IR W +++G C   F
Sbjct: 173 LWDTANQYTNVKTLHGHDHSVSSVRFMPDGETLV-SASRDKTIRVWQVSSGYCIKTF 228

Positively regulates the activity of the minus-end directed microtubule motor protein dynein. Plays a central role in positioning the mitotic spindle at the bud neck during cell division. Targets cytoplasmic dynein to microtubule plus ends, thereby promoting dynein-mediated microtubule sliding along the bud cortex and consequently the movement of the mitotic spindle to the bud neck.

Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) (taxid: 283643)

>sp|Q8YTC2|Y2800_NOSS1 Uncharacterized WD repeat-containing protein alr2800 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr2800 PE=4 SV=1

 Score = 77.8 bits (190), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 69/131 (52%), Gaps = 2/131 (1%)

Query: 550  LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL 609
            ++   +++V S  FSP+G+++AT   D+   +W  +      TL  HT W+ D+ FSP  
Sbjct: 1099 ILRGHSNRVYSAIFSPNGEIIATCSTDQTVKIWDWQQGKCLKTLTGHTNWVFDIAFSPDG 1158

Query: 610  SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS 669
              LA++S D+TVR+WD  N         GH+  V S+ F P  E ++ S   +  +R W+
Sbjct: 1159 KILASASHDQTVRIWDV-NTGKCHHICIGHTHLVSSVAFSPDGE-VVASGSQDQTVRIWN 1216

Query: 670  INNGSCAGVFK 680
            +  G C  + +
Sbjct: 1217 VKTGECLQILR 1227

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	743
297738887	871	unnamed protein product [Vitis vinifera]	0.909	0.776	0.693	0.0
225445366	878	PREDICTED: transcriptional corepressor L	0.909	0.769	0.686	0.0
359484630	883	PREDICTED: transcriptional corepressor L	0.905	0.762	0.678	0.0
280967728	905	LisH-SSDP-WD40 [Malus x domestica]	0.896	0.735	0.689	0.0
147784075	946	hypothetical protein VITISV_002025 [Viti	0.905	0.711	0.655	0.0
449441952	891	PREDICTED: transcriptional corepressor L	0.907	0.756	0.636	0.0
449441950	900	PREDICTED: transcriptional corepressor L	0.907	0.748	0.628	0.0
356515484	892	PREDICTED: transcriptional corepressor L	0.911	0.758	0.631	0.0
449522548	900	PREDICTED: transcriptional corepressor L	0.907	0.748	0.628	0.0
357466351	941	NAD(P)H-quinone oxidoreductase subunit [	0.911	0.719	0.580	0.0

>gi|297738887|emb|CBI28132.3| unnamed protein product [Vitis vinifera]

 Score =  853 bits (2204), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 499/720 (69%), Positives = 558/720 (77%), Gaps = 44/720 (6%)

Query: 1   MSQNNWEADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFW 60
           MSQ NWEADKMLDVYI+DY LKRKLHASAKAFQ E KVST+PVAIDAPGGFLFEWWSVFW
Sbjct: 1   MSQTNWEADKMLDVYIHDYFLKRKLHASAKAFQAEAKVSTEPVAIDAPGGFLFEWWSVFW 60

Query: 61  DIFIARTNEKHSESAASYIESQVIKAREQQQQQQQQHQKPQQHQQMQVQQLLLQRHAQQQ 120
           DIFIARTNEKHSE+AASYIE+Q+IKARE QQQQQQQ Q+ QQ QQ Q  Q   Q+  QQ 
Sbjct: 61  DIFIARTNEKHSEAAASYIETQLIKARELQQQQQQQQQQQQQQQQHQKPQQQQQQQQQQM 120

Query: 121 QQQQRR----------------DSTQHLNDTGDDL---------RPGFAKAFTTKMYEDR 155
           Q QQ                  D TQ LN +G+ L          P  A    TKMYE+R
Sbjct: 121 QMQQLLLQRHVQQQQQQQQQRRDGTQILNGSGNGLVSNDALMRQNPATANTLATKMYEER 180

Query: 156 LKKLPFQRDSLDDATIKPRLSDNMTQLLDPNHATLLKAAAIGSQPSGQTLHGT-HGVS-- 212
           LK LP QRD LDDA +K R  DNM QLL+PNHA+LLK+AA+  QP GQTLHG   G+S  
Sbjct: 181 LK-LPLQRDPLDDAAMKQRFGDNMGQLLEPNHASLLKSAAVSGQP-GQTLHGAPGGISGN 238

Query: 213 -QQVQSRSQQPPLSTQEVKTEMNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLKGWPLTGL 271
            QQVQSR+QQ  +S+ ++K+EMNP MNPRAAG EGSLIGVHGSNQG  N+TLKGWPLTGL
Sbjct: 239 LQQVQSRNQQLQVSS-DIKSEMNPMMNPRAAGPEGSLIGVHGSNQGGNNLTLKGWPLTGL 297

Query: 272 DQFRSGLLQQQKSLTQP----YNQLQLQQLMLQAQQNLASPSANDLESRKLRMLHNSRNM 327
           DQ RSG+LQQ KSL QP    +     QQL+LQAQQNLASPSA+DLE RKLRML NSRN 
Sbjct: 298 DQLRSGILQQHKSLIQPSQPFHQLQLQQQLLLQAQQNLASPSASDLECRKLRMLLNSRN- 356

Query: 328 GLARDGSSNSVGDLVSTVGSAMQIISPGLPRGDNDLLIKIQQQQQQLQHYSH-----HPL 382
            L +DG  N+VGD+V+ VGS MQ+  P LPRGD D+LIK+QQQQ Q  +        HPL
Sbjct: 357 SLGKDGQLNTVGDVVANVGSPMQVGCPVLPRGDTDMLIKLQQQQLQNSNQQQQQYLQHPL 416

Query: 383 SSQQSQNSNP-LLQQQDKILAGGSMTMDGSMSNTFQGNDQASKNQIGRKRKQAVSSSGPA 441
           SSQQSQ+SN  LL QQDK++  GS+ +DGSMSNTF+GNDQ SK QIGRKRKQ VSSSGPA
Sbjct: 417 SSQQSQSSNHHLLHQQDKMIGSGSIGLDGSMSNTFRGNDQTSKGQIGRKRKQPVSSSGPA 476

Query: 442 NSSGTANTPGPTPSSPSSPST-HTPGDVISRPTLQHNGASSKSLLMFGSDGMGSLTSAPN 500
           NSSGT NT GP+PSS  S  + HTPGDVIS PTL HNG SSKSLLM+GSDGMG+ TSAPN
Sbjct: 477 NSSGTGNTAGPSPSSAPSTPSTHTPGDVISMPTLSHNGGSSKSLLMYGSDGMGTHTSAPN 536

Query: 501 QLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVES 560
           QL D+DRFVDDGSLDDNVESFL+ DD DPRD VGRS +  KGF+F+E + I ASTSKVE 
Sbjct: 537 QLADVDRFVDDGSLDDNVESFLAHDDGDPRDTVGRSVDGSKGFSFSEVRCITASTSKVEC 596

Query: 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT 620
           CHFS DGKLLATGG DKKAVLWCTESFT KS LEEH+Q ITD+RFSPS+ RLATSSAD+T
Sbjct: 597 CHFSSDGKLLATGGQDKKAVLWCTESFTAKSRLEEHSQMITDIRFSPSMPRLATSSADKT 656

Query: 621 VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 680
           VRVWD +NP YSLRTFTGHST V SLDFHP+K+DL+CSCD N EIRYWSI NGSC  VFK
Sbjct: 657 VRVWDVDNPVYSLRTFTGHSTNVTSLDFHPNKDDLICSCDGNGEIRYWSIPNGSCTRVFK 716

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225445366|ref|XP_002284908.1| PREDICTED: transcriptional corepressor LEUNIG-like isoform 2 [Vitis vinifera]

 Score =  849 bits (2193), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 499/727 (68%), Positives = 557/727 (76%), Gaps = 51/727 (7%)

Query: 1   MSQNNWEADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFW 60
           MSQ NWEADKMLDVYI+DY LKRKLHASAKAFQ E KVST+PVAIDAPGGFLFEWWSVFW
Sbjct: 1   MSQTNWEADKMLDVYIHDYFLKRKLHASAKAFQAEAKVSTEPVAIDAPGGFLFEWWSVFW 60

Query: 61  DIFIARTNEKHSESAASYIESQVIKAREQQQQQQQQHQKPQQHQQMQVQQLLLQRHAQQQ 120
           DIFIARTNEKHSE+AASYIE+Q+IKARE QQQQQQQ Q+ QQ QQ Q  Q   Q+  QQ 
Sbjct: 61  DIFIARTNEKHSEAAASYIETQLIKARELQQQQQQQQQQQQQQQQHQKPQQQQQQQQQQM 120

Query: 121 QQQQRR----------------DSTQHLNDTGDDL---------RPGFAKAFTTKMYEDR 155
           Q QQ                  D TQ LN +G+ L          P  A    TKMYE+R
Sbjct: 121 QMQQLLLQRHVQQQQQQQQQRRDGTQILNGSGNGLVSNDALMRQNPATANTLATKMYEER 180

Query: 156 LKKLPFQRDSLDDATIKPRLSDNMTQLLDPNHATLLKAAAIGSQPSGQTLHGT-HGVS-- 212
           LK LP QRD LDDA +K R  DNM QLL+PNHA+LLK+AA+  QP GQTLHG   G+S  
Sbjct: 181 LK-LPLQRDPLDDAAMK-RFGDNMGQLLEPNHASLLKSAAVSGQP-GQTLHGAPGGISGN 237

Query: 213 -QQVQSRSQQPPLSTQ-EVKTEMNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLKGWPLTG 270
            QQVQSR+QQ  +S+  ++K+EMNP MNPRAAG EGSLIGVHGSNQG  N+TLKGWPLTG
Sbjct: 238 LQQVQSRNQQLQVSSACDIKSEMNPMMNPRAAGPEGSLIGVHGSNQGGNNLTLKGWPLTG 297

Query: 271 LDQFRSGLLQQQKSLTQP----YNQLQLQQLMLQAQQNLASPSANDLESRKLRMLHNSRN 326
           LDQ RSG+LQQ KSL QP    +     QQL+LQAQQNLASPSA+DLE RKLRML NSRN
Sbjct: 298 LDQLRSGILQQHKSLIQPSQPFHQLQLQQQLLLQAQQNLASPSASDLECRKLRMLLNSRN 357

Query: 327 MGLARDGSSNSVGDLVSTVGSAMQIISPGLPRGDNDLLIK-----------IQQQQQQLQ 375
             L +DG  N+VGD+V+ VGS MQ+  P LPRGD D+LIK           +Q   QQ Q
Sbjct: 358 -SLGKDGQLNTVGDVVANVGSPMQVGCPVLPRGDTDMLIKRLNVSQLQQQQLQNSNQQQQ 416

Query: 376 HYSHHPLSSQQSQNSNP-LLQQQDKILAGGSMTMDGSMSNTFQGNDQASKNQIGRKRKQA 434
            Y  HPLSSQQSQ+SN  LL QQDK++  GS+ +DGSMSNTF+GNDQ SK QIGRKRKQ 
Sbjct: 417 QYLQHPLSSQQSQSSNHHLLHQQDKMIGSGSIGLDGSMSNTFRGNDQTSKGQIGRKRKQP 476

Query: 435 VSSSGPANSSGTANTPGPTPSSPSSPST-HTPGDVISRPTLQHNGASSKSLLMFGSDGMG 493
           VSSSGPANSSGT NT GP+PSS  S  + HTPGDVIS PTL HNG SSKSLLM+GSDGMG
Sbjct: 477 VSSSGPANSSGTGNTAGPSPSSAPSTPSTHTPGDVISMPTLSHNGGSSKSLLMYGSDGMG 536

Query: 494 SLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPA 553
           + TSAPNQL D+DRFVDDGSLDDNVESFL+ DD DPRD VGRS +  KGF+F+E + I A
Sbjct: 537 THTSAPNQLADVDRFVDDGSLDDNVESFLAHDDGDPRDTVGRSVDGSKGFSFSEVRCITA 596

Query: 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA 613
           STSKVE CHFS DGKLLATGG DKKAVLWCTESFT KS LEEH+Q ITD+RFSPS+ RLA
Sbjct: 597 STSKVECCHFSSDGKLLATGGQDKKAVLWCTESFTAKSRLEEHSQMITDIRFSPSMPRLA 656

Query: 614 TSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG 673
           TSSAD+TVRVWD +NP YSLRTFTGHST V SLDFHP+K+DL+CSCD N EIRYWSI NG
Sbjct: 657 TSSADKTVRVWDVDNPVYSLRTFTGHSTNVTSLDFHPNKDDLICSCDGNGEIRYWSIPNG 716

Query: 674 SCAGVFK 680
           SC  VFK
Sbjct: 717 SCTRVFK 723

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359484630|ref|XP_003633134.1| PREDICTED: transcriptional corepressor LEUNIG-like [Vitis vinifera]

 Score =  845 bits (2184), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 499/735 (67%), Positives = 555/735 (75%), Gaps = 62/735 (8%)

Query: 1   MSQNNWEADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFW 60
           MSQ NWEADKMLDVYI+DY LKRKLHASAKAFQ E KVST+PVAIDAPGGFLFEWWSVFW
Sbjct: 1   MSQTNWEADKMLDVYIHDYFLKRKLHASAKAFQAEAKVSTEPVAIDAPGGFLFEWWSVFW 60

Query: 61  DIFIARTNEKHSESAASYIESQVIKAREQQQQQQQQHQKPQQHQQMQVQQLLLQRHAQQQ 120
           DIFIARTNEKHSE+AASYIE+Q+IKARE QQQQQQQ Q+ QQ QQ Q  Q   Q+  QQ 
Sbjct: 61  DIFIARTNEKHSEAAASYIETQLIKARELQQQQQQQQQQQQQQQQHQKPQQQQQQQQQQM 120

Query: 121 QQQQRR----------------DSTQHLNDTGDDL---------RPGFAKAFTTKMYEDR 155
           Q QQ                  D TQ LN +G+ L          P  A    TKMYE+R
Sbjct: 121 QMQQLLLQRHVQQQQQQQQQRRDGTQILNGSGNGLVSNDALMRQNPATANTLATKMYEER 180

Query: 156 LKKLPFQRDSLDDATIKPRLSDNMTQLLDPNHATLLKAAAIGSQPSGQTLHGT-HGVS-- 212
           LK LP QRD LDDA +K R  DNM QLL+PNHA+LLK+AA+  QP GQTLHG   G+S  
Sbjct: 181 LK-LPLQRDPLDDAAMKQRFGDNMGQLLEPNHASLLKSAAVSGQP-GQTLHGAPGGISGN 238

Query: 213 -QQVQSRSQQPPLSTQEVKTEMNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLKGWPLTGL 271
            QQVQSR+QQ     Q++K+EMNP MNPRAAG EGSLIGVHGSNQG  N+TLKGWPLTGL
Sbjct: 239 LQQVQSRNQQ----LQDIKSEMNPMMNPRAAGPEGSLIGVHGSNQGGNNLTLKGWPLTGL 294

Query: 272 DQFRSGLLQQQKSLTQP----YNQLQLQQLMLQAQQNLASPSANDLESRKLRMLHNSRNM 327
           DQ RSG+LQQ KSL QP    +     QQL+LQAQQNLASPSA+DLE RKLRML NSRN 
Sbjct: 295 DQLRSGILQQHKSLIQPSQPFHQLQLQQQLLLQAQQNLASPSASDLECRKLRMLLNSRN- 353

Query: 328 GLARDGSSNSVGDLVSTVGSAMQIISPGLPRGDNDLLIK-----------IQQQQQQLQH 376
            L +DG  N+VGD+V+ VGS MQ+  P LPRGD D+LIK           +Q   QQ Q 
Sbjct: 354 SLGKDGQLNTVGDVVANVGSPMQVGCPVLPRGDTDMLIKRLNVSQLQQQQLQNSNQQQQQ 413

Query: 377 YSHHPLSSQQSQNSNP-LLQQQDKILAGGSMTMDGSMSNTFQGNDQASKNQIGRKRKQAV 435
           Y  HPLSSQQSQ+SN  LL QQDK++  GS+ +DGSMSNTF+GNDQ SK QIGRKRKQ V
Sbjct: 414 YLQHPLSSQQSQSSNHHLLHQQDKMIGSGSIGLDGSMSNTFRGNDQTSKGQIGRKRKQPV 473

Query: 436 SSSGPANSSGTANTPGPTPSSPSSPST-HTPGDVISRPTLQHNGASSKSLLMFGSDGMGS 494
           SSSGPANSSGT NT GP+PSS  S  + HTPGDVIS PTL HNG SSKSLLM+GSDGMG+
Sbjct: 474 SSSGPANSSGTGNTAGPSPSSAPSTPSTHTPGDVISMPTLSHNGGSSKSLLMYGSDGMGT 533

Query: 495 LTSAPNQL---------TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTF 545
            TSAPNQL          D+DRFVDDGSLDDNVESFL+ DD DPRD VGRS +  KGF+F
Sbjct: 534 HTSAPNQLWNNRYNNLQADVDRFVDDGSLDDNVESFLAHDDGDPRDTVGRSVDGSKGFSF 593

Query: 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRF 605
           +E + I ASTSKVE CHFS DGKLLATGG DKKAVLWCTESFT KS LEEH+Q ITD+RF
Sbjct: 594 SEVRCITASTSKVECCHFSSDGKLLATGGQDKKAVLWCTESFTAKSRLEEHSQMITDIRF 653

Query: 606 SPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI 665
           SPS+ RLATSSAD+TVRVWD +NP YSLRTFTGHST V SLDFHP+K+DL+CSCD N EI
Sbjct: 654 SPSMPRLATSSADKTVRVWDVDNPVYSLRTFTGHSTNVTSLDFHPNKDDLICSCDGNGEI 713

Query: 666 RYWSINNGSCAGVFK 680
           RYWSI NGSC  VFK
Sbjct: 714 RYWSIPNGSCTRVFK 728

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|280967728|gb|ACZ98534.1| LisH-SSDP-WD40 [Malus x domestica]

 Score =  843 bits (2179), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 486/705 (68%), Positives = 555/705 (78%), Gaps = 39/705 (5%)

Query: 9   DKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFWDIFIARTN 68
           D  LDVYIYDYL+KRKLHASAKAFQ EGKVSTDPVAIDAPGGFLFEWWSVFWDIFIARTN
Sbjct: 4   DHRLDVYIYDYLMKRKLHASAKAFQDEGKVSTDPVAIDAPGGFLFEWWSVFWDIFIARTN 63

Query: 69  EKHSESAASYIESQVIKAREQQQQQQQQHQKPQQHQQMQVQQLLLQRHAQQQQQQQRR-- 126
           EKHSE+AASYIE+QVIKAREQQQQQ+ Q Q   Q QQ+ +Q+   Q+  Q+QQQQQ++  
Sbjct: 64  EKHSEAAASYIETQVIKAREQQQQQKPQLQDQMQMQQLLLQRHAQQQQQQRQQQQQQQQP 123

Query: 127 -----------DSTQHLNDTGDD--LR--PGFAKAFTTKMYEDRLKKLPFQRDSLDDATI 171
                      D TQ  N T +D  LR  P  A +  TKMYE+RLK LP QRD++DDA I
Sbjct: 124 QQQQQQQQQRRDGTQLHNGTANDSLLRQNPATANSMATKMYEERLK-LPPQRDAMDDAAI 182

Query: 172 KPRLSDNMTQLLDPNHATLLKAAAIGSQPSGQTLHGTHGVS----QQVQSRSQQPPLSTQ 227
           K RL DNM+QLLDPNH +++KAA  G QP GQ LHGT G      QQ  SRSQQ P S+Q
Sbjct: 183 KQRLGDNMSQLLDPNHVSMMKAATAGGQPPGQMLHGTPGGVLGNLQQPHSRSQQLPGSSQ 242

Query: 228 EVKTEMNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLKGWPLTGLDQFRSGLLQQQKSLTQ 287
           ++K+E+   MNPRA   EGSLIG HGSNQG  N+TLKGWPLTG D+ RSG+LQQQ SL Q
Sbjct: 243 DIKSEV---MNPRAVAPEGSLIGTHGSNQGNNNLTLKGWPLTGFDRLRSGILQQQNSLMQ 299

Query: 288 ---PYNQLQLQQLMLQAQQNLASPSANDLESRKLRMLHNSRNMGLARDGSSNSVGDLVST 344
              PYNQL  QQ ++ AQQNLASPS+NDL++R+++ML N+RNM L +DG  +SV   V  
Sbjct: 300 SPQPYNQLLQQQQLMLAQQNLASPSSNDLDNRRMKMLLNNRNMVLGKDGQLSSVD--VPN 357

Query: 345 VGSAMQIISPGLPRGDNDLLIK---------IQQQQQQLQHYSHHPLSSQQSQNSNPLLQ 395
           VGS  Q+  P LPRGD D+L+K         +Q   QQ Q YS HPLS Q SQNS+  LQ
Sbjct: 358 VGSPAQVGCPVLPRGDADMLMKPTYQLQQQQMQSNNQQQQPYSQHPLSGQHSQNSSQHLQ 417

Query: 396 QQDKILAGGSMTMDGSMSNTFQGNDQASKNQIGRKRKQAVSSSGPANSSGTANTPGPTPS 455
           Q +KI+  GSM  DGSM NT QGNDQASKNQ+GRKRKQ VSSSGPANSSGT NT GP+PS
Sbjct: 418 QHEKIMGSGSMAPDGSMPNTLQGNDQASKNQLGRKRKQPVSSSGPANSSGTVNTTGPSPS 477

Query: 456 SPSSPSTHTPGDVISRPTLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLD 515
           SPS+PSTHT GDV+S PTL HNG SSKSLLMFGSDG+GS  SAPN+LTD+DRFVDDGSL+
Sbjct: 478 SPSTPSTHTAGDVMSMPTLPHNGGSSKSLLMFGSDGLGSRASAPNKLTDVDRFVDDGSLE 537

Query: 516 DNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH 575
           DNVESFLS DDADPR RV R ++V KGF+F E QLIPAST+KVE CH S DGK LATGGH
Sbjct: 538 DNVESFLSHDDADPRGRVVRCSDVSKGFSFKEVQLIPASTNKVECCHLSSDGKSLATGGH 597

Query: 576 DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 635
           D+KAVLWCTE+++VKSTL+EH+QWITDVRFSPS+SRLATSSAD+TVRVWD +NP YSLRT
Sbjct: 598 DRKAVLWCTETYSVKSTLDEHSQWITDVRFSPSMSRLATSSADKTVRVWDADNPGYSLRT 657

Query: 636 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 680
           FTGHS+TVMS+DFHPSKED LCSCDNNSEIRYWSI NGSCAGVFK
Sbjct: 658 FTGHSSTVMSVDFHPSKEDFLCSCDNNSEIRYWSIKNGSCAGVFK 702

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147784075|emb|CAN76829.1| hypothetical protein VITISV_002025 [Vitis vinifera]

 Score =  830 bits (2143), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 499/761 (65%), Positives = 557/761 (73%), Gaps = 88/761 (11%)

Query: 1   MSQNNWEADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFW 60
           MSQ NWEADKMLDVYI+DY LKRKLHASAKAFQ E KVST+PVAIDAPGGFLFEWWSVFW
Sbjct: 1   MSQTNWEADKMLDVYIHDYFLKRKLHASAKAFQAEAKVSTEPVAIDAPGGFLFEWWSVFW 60

Query: 61  DIFIARTNEKHSESAASYIE-------------------SQVIKAREQQQQQQQQHQKPQ 101
           DIFIARTNEKHSE+AASYIE                   +Q+IKARE QQQQQQQ Q+ Q
Sbjct: 61  DIFIARTNEKHSEAAASYIELFLEKFFNNLTVKSMLKCQTQLIKARELQQQQQQQQQQQQ 120

Query: 102 QHQQMQVQQLLLQRHAQQQQQQQRR------------------DSTQHLNDTGDDL---- 139
           Q QQ Q  Q   Q+  QQQQ Q ++                  D TQ LN +G+ L    
Sbjct: 121 QQQQHQKPQQQQQQQQQQQQMQMQQLLLQRHVQQQQQQQQQRRDGTQILNGSGNGLVSND 180

Query: 140 -----RPGFAKAFTTKMYEDRLKKLPFQRDSLDDATIKPRLSDNMTQLLDPNHATLLKAA 194
                 P  A    TKMYE+RLK LP QRD LDDA +K R  DNM QLL+PNHA+LLK+A
Sbjct: 181 ALMRQNPATANTLATKMYEERLK-LPLQRDPLDDAAMKQRFGDNMGQLLEPNHASLLKSA 239

Query: 195 AIGSQPSGQTLHGT-HGVS---QQVQSRSQQPPLSTQEVKTEMNPTMNPRAAGSEGSLIG 250
           A+  QP GQTLHG   G+S   QQVQSR+QQ     Q++K+EMNP MNPRAAG EGSLIG
Sbjct: 240 AVSGQP-GQTLHGAPGGISGNLQQVQSRNQQ----LQDIKSEMNPMMNPRAAGPEGSLIG 294

Query: 251 VHGSNQGAGNVTLKGWPLTGLDQFRSGLLQQQKSLTQP----YNQLQLQQLMLQAQQNLA 306
           VHGSNQG  N+TLKGWPLTGLDQ RSG+LQQ KSL QP    +     QQL+LQAQQNLA
Sbjct: 295 VHGSNQGGNNLTLKGWPLTGLDQLRSGILQQHKSLIQPSQPFHQLQLQQQLLLQAQQNLA 354

Query: 307 SPSANDLESRKLRMLHNSRNMGLARDGSSNSVGDLVSTVGSAMQIISPGLPRGDNDLLIK 366
           SPSA+DLE RKLRML NSRN  L +DG  N+VGD+V+ VGS MQ+  P LPRGD D+LIK
Sbjct: 355 SPSASDLECRKLRMLLNSRN-SLGKDGQLNTVGDVVANVGSPMQVGCPVLPRGDTDMLIK 413

Query: 367 -----------IQQQQQQLQHYSHHPLSSQQSQNSNP-LLQQQDKILAGGSMTMDGSMSN 414
                      +Q   QQ Q Y  HPLSSQQSQ+SN  LL QQDK++  GS+ +DGSMSN
Sbjct: 414 RLNVSQLQQQQLQNSNQQQQQYLQHPLSSQQSQSSNHHLLHQQDKMIGSGSIGLDGSMSN 473

Query: 415 TFQGNDQASKNQIGRKRKQAVSSSGPANSSGTANTPGPTPSSPSSPST-HTPGDVISRPT 473
           TF+GNDQ SK QIGRKRKQ VSSSGPANSSGT NT GP+PSS  S  + HTPGDVIS PT
Sbjct: 474 TFRGNDQTSKGQIGRKRKQPVSSSGPANSSGTGNTAGPSPSSAPSTPSTHTPGDVISMPT 533

Query: 474 LQHNGASSKSLLMFGSDGMGSLTSAPNQL--------------TDMDRFVDDGSLDDNVE 519
           L HNG SSKSLLM+GSDGMG+ TSAPNQL               D+DRFVDDGSLDDNVE
Sbjct: 534 LSHNGGSSKSLLMYGSDGMGTHTSAPNQLHSVGQWNNRYNNLQADVDRFVDDGSLDDNVE 593

Query: 520 SFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKA 579
           SFL+ DD DPRD VGRS +  KGF+F+E + I ASTSKVE CHFS DGKLLATGG DKKA
Sbjct: 594 SFLAHDDGDPRDTVGRSVDGSKGFSFSEVRCITASTSKVECCHFSSDGKLLATGGQDKKA 653

Query: 580 VLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGH 639
           VLWCTESFT KS LEEH+Q ITD+RFSPS+ RLATSSAD+TVRVWD +NP YSLRTFTGH
Sbjct: 654 VLWCTESFTAKSRLEEHSQMITDIRFSPSMPRLATSSADKTVRVWDVDNPVYSLRTFTGH 713

Query: 640 STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 680
           ST V SLDFHP+K+DL+CSCD N EIRYWSI NGSC  VFK
Sbjct: 714 STNVTSLDFHPNKDDLICSCDGNGEIRYWSIPNGSCTRVFK 754

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441952|ref|XP_004138746.1| PREDICTED: transcriptional corepressor LEUNIG-like isoform 2 [Cucumis sativus]

 Score =  821 bits (2121), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 472/742 (63%), Positives = 541/742 (72%), Gaps = 68/742 (9%)

Query: 1   MSQNNWEADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFW 60
           MSQ NWEADKMLDVYI+DYL+KR L A+A+AFQ EGKVS+DPVAIDAPGGFLFEWWSVFW
Sbjct: 1   MSQTNWEADKMLDVYIHDYLVKRDLKATAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60

Query: 61  DIFIARTNEKHSESAASYIESQVIKAREQQQQQQQQHQKPQQHQQMQVQQ--LLLQRHAQ 118
           DIFIARTNEKHS+ AASYIE+Q+IKAREQQQ QQQQ Q+ Q  QQ       LL+QRHAQ
Sbjct: 61  DIFIARTNEKHSDVAASYIETQLIKAREQQQHQQQQQQQTQPQQQQPQHMQMLLMQRHAQ 120

Query: 119 QQQQQQ------------------------RRDSTQHLNDTGDDL---------RPGFAK 145
           QQQQQQ                        RRD  Q LN + +            PG   
Sbjct: 121 QQQQQQQQQQHQQQQQPQQQQQQSQQQQQQRRDGAQLLNGSSNGFVGNDPLMRQNPGSVN 180

Query: 146 AFTTKMYEDRLKKLPFQRDSLDDATIKPRLSDNMTQLLDPNHATLLKAAAIGSQPSGQTL 205
           A  TKMYEDRLK LP QRDSLDD  +K R  DN+ QLLDPNHA++LK+AA  SQ SGQ L
Sbjct: 181 ALATKMYEDRLK-LPLQRDSLDDGAMKQRYGDNVGQLLDPNHASILKSAAATSQSSGQVL 239

Query: 206 HG-THGVSQQVQSRSQQPPLSTQEVKTEMNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLK 264
           HG T G+S QVQ RSQQ P ST ++KTE+NP +NPRAAG EGSL+G+ GSN G  N+TLK
Sbjct: 240 HGSTGGMSPQVQPRSQQLPGSTPDIKTEINPVLNPRAAGPEGSLMGIPGSNHGGNNLTLK 299

Query: 265 GWPLTGLDQFRSGLLQQQKSLTQP---YNQLQL------QQLMLQAQQNLASPSANDLES 315
           GWPLTGLDQ RSG+LQQQK   Q    + QLQ+      QQLML AQQNL SPS ND + 
Sbjct: 300 GWPLTGLDQLRSGILQQQKPFIQAPQSFPQLQMLTPQHQQQLML-AQQNLTSPSVND-DG 357

Query: 316 RKLRMLHNSRNMGLARDGSSNSVGDLVSTVGSAMQIISPGLPRGDN-DLLIKIQQ----- 369
           R+LRML N+R   +A+DG SNSVGD+V  VGS +Q  SP LPRGDN D+++KI+      
Sbjct: 358 RRLRMLLNTR---MAKDGLSNSVGDVVPNVGSPLQAGSPLLPRGDNTDMILKIKMAQLQQ 414

Query: 370 ---------QQQQLQHYSHHPLSSQQSQNSNPLLQQQDKILAGGSMTMDGSMSNTFQGND 420
                    QQQQ Q    H LS+QQSQ+SN  + QQ+KI   GS+TMDGSMSN+F+GND
Sbjct: 415 QQQQQQSSSQQQQQQQLQQHALSNQQSQSSNHNMHQQEKIGGAGSVTMDGSMSNSFRGND 474

Query: 421 QASKNQIGRKRKQAVSSSGPANSSGTANTPGPTPSSPSSPST-HTPGDVISRPTLQHNGA 479
           Q SKNQ GRKRKQ VSSSGPANSSGTANT GP+PSS  S  + HTPGD IS P L H+G+
Sbjct: 475 QVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHTPGDAISMPALPHSGS 534

Query: 480 SSKSL-LMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAE 538
           SSK L +MF SDG G+ TS  NQL DMDR+V+DGSLDDNV+SFLS DD DPRD VGR  +
Sbjct: 535 SSKPLTMMFNSDGTGTFTSPSNQLADMDRYVEDGSLDDNVDSFLSHDDGDPRDPVGRCMD 594

Query: 539 VGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ 598
             KGFTFTE   + ASTSKV SCHFS DGKLL +GGHDKKAVLW TE+   K++LEEH  
Sbjct: 595 GSKGFTFTEVNSVRASTSKVSSCHFSSDGKLLVSGGHDKKAVLWYTENLKPKTSLEEHAA 654

Query: 599 WITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS 658
            +TDVRFSPS+ RLATSS DRTVRVWD +N  YSLRTFTGHS +VMSLDFHP K+D +CS
Sbjct: 655 IVTDVRFSPSMPRLATSSFDRTVRVWDADNHCYSLRTFTGHSASVMSLDFHPKKDDFICS 714

Query: 659 CDNNSEIRYWSINNGSCAGVFK 680
           CD + EIRYW+I NGSCA VFK
Sbjct: 715 CDGDGEIRYWNITNGSCAAVFK 736

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441950|ref|XP_004138745.1| PREDICTED: transcriptional corepressor LEUNIG-like isoform 1 [Cucumis sativus]

 Score =  813 bits (2099), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 472/751 (62%), Positives = 541/751 (72%), Gaps = 77/751 (10%)

Query: 1   MSQNNWEADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFW 60
           MSQ NWEADKMLDVYI+DYL+KR L A+A+AFQ EGKVS+DPVAIDAPGGFLFEWWSVFW
Sbjct: 1   MSQTNWEADKMLDVYIHDYLVKRDLKATAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60

Query: 61  DIFIARTNEKHSESAASYIESQVIKAREQQQQQQQQHQKPQQHQQMQVQQ--LLLQRHAQ 118
           DIFIARTNEKHS+ AASYIE+Q+IKAREQQQ QQQQ Q+ Q  QQ       LL+QRHAQ
Sbjct: 61  DIFIARTNEKHSDVAASYIETQLIKAREQQQHQQQQQQQTQPQQQQPQHMQMLLMQRHAQ 120

Query: 119 QQQQQQ------------------------RRDSTQHLNDTGDDL---------RPGFAK 145
           QQQQQQ                        RRD  Q LN + +            PG   
Sbjct: 121 QQQQQQQQQQHQQQQQPQQQQQQSQQQQQQRRDGAQLLNGSSNGFVGNDPLMRQNPGSVN 180

Query: 146 AFTTKMYEDRLKKLPFQRDSLDDATIKPRLSDNMTQLLDPNHATLLKAAAIGSQPSGQTL 205
           A  TKMYEDRLK LP QRDSLDD  +K R  DN+ QLLDPNHA++LK+AA  SQ SGQ L
Sbjct: 181 ALATKMYEDRLK-LPLQRDSLDDGAMKQRYGDNVGQLLDPNHASILKSAAATSQSSGQVL 239

Query: 206 HG-THGVSQQVQSRSQQPPLSTQEVKTEMNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLK 264
           HG T G+S QVQ RSQQ P ST ++KTE+NP +NPRAAG EGSL+G+ GSN G  N+TLK
Sbjct: 240 HGSTGGMSPQVQPRSQQLPGSTPDIKTEINPVLNPRAAGPEGSLMGIPGSNHGGNNLTLK 299

Query: 265 GWPLTGLDQFRSGLLQQQKSLTQP---YNQLQL------QQLMLQAQQNLASPSANDLES 315
           GWPLTGLDQ RSG+LQQQK   Q    + QLQ+      QQLML AQQNL SPS ND + 
Sbjct: 300 GWPLTGLDQLRSGILQQQKPFIQAPQSFPQLQMLTPQHQQQLML-AQQNLTSPSVND-DG 357

Query: 316 RKLRMLHNSRNMGLARDGSSNSVGDLVSTVGSAMQIISPGLPRGDN-DLLIKIQQ----- 369
           R+LRML N+R   +A+DG SNSVGD+V  VGS +Q  SP LPRGDN D+++KI+      
Sbjct: 358 RRLRMLLNTR---MAKDGLSNSVGDVVPNVGSPLQAGSPLLPRGDNTDMILKIKMAQLQQ 414

Query: 370 ---------QQQQLQHYSHHPLSSQQSQNSNPLLQQQDKILAGGSMTMDGSMSNTFQGND 420
                    QQQQ Q    H LS+QQSQ+SN  + QQ+KI   GS+TMDGSMSN+F+GND
Sbjct: 415 QQQQQQSSSQQQQQQQLQQHALSNQQSQSSNHNMHQQEKIGGAGSVTMDGSMSNSFRGND 474

Query: 421 QASKNQIGRKRKQAVSSSGPANSSGTANTPGPTPSSPSSPST-HTPGDVISRPTLQHNGA 479
           Q SKNQ GRKRKQ VSSSGPANSSGTANT GP+PSS  S  + HTPGD IS P L H+G+
Sbjct: 475 QVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHTPGDAISMPALPHSGS 534

Query: 480 SSKSL-LMFGSDGMGSLTSAPNQL---------TDMDRFVDDGSLDDNVESFLSPDDADP 529
           SSK L +MF SDG G+ TS  NQL          DMDR+V+DGSLDDNV+SFLS DD DP
Sbjct: 535 SSKPLTMMFNSDGTGTFTSPSNQLWDDKELELQADMDRYVEDGSLDDNVDSFLSHDDGDP 594

Query: 530 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV 589
           RD VGR  +  KGFTFTE   + ASTSKV SCHFS DGKLL +GGHDKKAVLW TE+   
Sbjct: 595 RDPVGRCMDGSKGFTFTEVNSVRASTSKVSSCHFSSDGKLLVSGGHDKKAVLWYTENLKP 654

Query: 590 KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFH 649
           K++LEEH   +TDVRFSPS+ RLATSS DRTVRVWD +N  YSLRTFTGHS +VMSLDFH
Sbjct: 655 KTSLEEHAAIVTDVRFSPSMPRLATSSFDRTVRVWDADNHCYSLRTFTGHSASVMSLDFH 714

Query: 650 PSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 680
           P K+D +CSCD + EIRYW+I NGSCA VFK
Sbjct: 715 PKKDDFICSCDGDGEIRYWNITNGSCAAVFK 745

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356515484|ref|XP_003526430.1| PREDICTED: transcriptional corepressor LEUNIG-like [Glycine max]

 Score =  813 bits (2099), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 467/740 (63%), Positives = 544/740 (73%), Gaps = 63/740 (8%)

Query: 1   MSQNNWEADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFW 60
           MSQ NWEADKMLDVYI+DYL+KR L ASA+AFQ EGKVS+DPVAIDAPGGFLFEWWSVFW
Sbjct: 1   MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60

Query: 61  DIFIARTNEKHSESAASYIESQVIKAREQQQQQQQQHQKPQQHQQMQVQQLLLQRHAQQQ 120
           DIFIARTNEKHSE AASYIE+Q+IKAREQQQQQ QQ  +PQQ Q  Q    + Q   Q+ 
Sbjct: 61  DIFIARTNEKHSEVAASYIETQLIKAREQQQQQNQQQPQPQQSQHQQQHMQMQQLLLQRA 120

Query: 121 QQQQR------------------------RDSTQHLNDTGDDL--RPGFAKAFTTKMYED 154
           QQQQ+                        RD    LN + + L   PG A A  TKMYE+
Sbjct: 121 QQQQQQQQQQQQQPQSQQQQSQPQQQQQSRDRPHLLNGSANGLVGNPGTANALATKMYEE 180

Query: 155 RLKKLPFQRDSLDDATIKPRLSDNMTQLLDPNHATLLKAAAIGSQPSGQTLHGTHG-VSQ 213
           RLK LP QRDSLDDA  K R  +NM QLLDPNHA +LK+AA   QPSGQ LHG  G +S 
Sbjct: 181 RLK-LPLQRDSLDDAATKQRFGENMGQLLDPNHAPILKSAAAPGQPSGQVLHGAAGGMSP 239

Query: 214 QVQSRSQQPPLSTQEVKTEMNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLKGWPLTGLDQ 273
           QVQ+R+QQ P ST ++K E++P +NPRA G EGSL+G+ GSN G+ N+TLKGWPLTGL+Q
Sbjct: 240 QVQARTQQLPGSTLDIKGEISPVLNPRAVGPEGSLMGMPGSNPGSNNLTLKGWPLTGLEQ 299

Query: 274 FRSGLLQQQKSLTQ---PYNQLQL------QQLMLQAQQNLASPSANDLESRKLRMLHNS 324
            RSGLLQQQK   Q   P++QLQ+      QQLML AQQNLASPSA++ ESR+LRML N+
Sbjct: 300 LRSGLLQQQKPFMQAPQPFHQLQMLTPQHQQQLML-AQQNLASPSASE-ESRRLRMLLNN 357

Query: 325 RNMGLARDGSSNSVGDLVSTVGSAMQIISPGLPRGDNDLLIKIQQQQQQLQHYSH----- 379
           RN+GL +DG SN VGD+VS VGS +Q   P  PRGD D+L+K++  Q Q Q         
Sbjct: 358 RNIGLNKDGLSNPVGDVVSNVGSPLQGGGPPFPRGDTDMLVKLKLAQLQQQQQQQSSTNA 417

Query: 380 -------HPLSSQQSQNSNPLLQQQDKILAGG--SMTMDGSMSNTFQGNDQASKNQIGRK 430
                  H LS+QQSQ SN  + QQDK+  GG  S+T+DGSMSN+F+GNDQ SKNQIGRK
Sbjct: 418 QQQQLQQHTLSNQQSQTSNHSMHQQDKVGGGGGGSVTVDGSMSNSFRGNDQVSKNQIGRK 477

Query: 431 RKQAVSSSGPANSSGTANTPGPTPSSPSSPST-HTPGDVISRPTLQHNGASSKSLLMFGS 489
           RKQ  SSSGPANSSGTANT GP+PSS  S  + HTPGDVIS P L H+G+SSK L+MF +
Sbjct: 478 RKQPGSSSGPANSSGTANTTGPSPSSAPSTPSTHTPGDVISMPALPHSGSSSKPLMMFST 537

Query: 490 DGMGSLTSAPNQL---------TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVG 540
           DG G+LTS  NQL          D+DRFV+DGSLD+NVESFLS DD DPRD VGR  +V 
Sbjct: 538 DGTGTLTSPSNQLWDDKDLELQADVDRFVEDGSLDENVESFLSHDDTDPRDTVGRCMDVS 597

Query: 541 KGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWI 600
           KGFTF++   + ASTSKV  CHFS DGKLLA+GGHDKK VLW T+S   K+TLEEH+  I
Sbjct: 598 KGFTFSDVNSVRASTSKVSCCHFSSDGKLLASGGHDKKVVLWYTDSLKQKATLEEHSSLI 657

Query: 601 TDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD 660
           TDVRFSPS+ RLATSS D+TVRVWD +NP YSLRTFTGHST+VMSLDFHP+K+DL+CSCD
Sbjct: 658 TDVRFSPSMPRLATSSFDKTVRVWDVDNPGYSLRTFTGHSTSVMSLDFHPNKDDLICSCD 717

Query: 661 NNSEIRYWSINNGSCAGVFK 680
            + EIRYWSINNGSCA V K
Sbjct: 718 GDGEIRYWSINNGSCARVSK 737

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449522548|ref|XP_004168288.1| PREDICTED: transcriptional corepressor LEUNIG-like [Cucumis sativus]

 Score =  813 bits (2099), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 472/751 (62%), Positives = 541/751 (72%), Gaps = 77/751 (10%)

Query: 1   MSQNNWEADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFW 60
           MSQ NWEADKMLDVYI+DYL+KR L A+A+AFQ EGKVS+DPVAIDAPGGFLFEWWSVFW
Sbjct: 1   MSQTNWEADKMLDVYIHDYLVKRDLKATAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60

Query: 61  DIFIARTNEKHSESAASYIESQVIKAREQQQQQQQQHQKPQQHQQMQVQQ--LLLQRHAQ 118
           DIFIARTNEKHS+ AASYIE+Q+IKAREQQQ QQQQ Q+ Q  QQ       LL+QRHAQ
Sbjct: 61  DIFIARTNEKHSDVAASYIETQLIKAREQQQHQQQQQQQTQPQQQQPQHMQMLLMQRHAQ 120

Query: 119 QQQQQQ------------------------RRDSTQHLNDTGDDL---------RPGFAK 145
           QQQQQQ                        RRD  Q LN + +            PG   
Sbjct: 121 QQQQQQQQQQHQQQQQPQQQQQQSQQQQQQRRDGAQLLNGSSNGFVGNDPLMRQNPGSVN 180

Query: 146 AFTTKMYEDRLKKLPFQRDSLDDATIKPRLSDNMTQLLDPNHATLLKAAAIGSQPSGQTL 205
           A  TKMYEDRLK LP QRDSLDD  +K R  DN+ QLLDPNHA++LK+AA  SQ SGQ L
Sbjct: 181 ALATKMYEDRLK-LPLQRDSLDDGAMKQRYGDNVGQLLDPNHASILKSAAATSQSSGQVL 239

Query: 206 HG-THGVSQQVQSRSQQPPLSTQEVKTEMNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLK 264
           HG T G+S QVQ RSQQ P ST ++KTE+NP +NPRAAG EGSL+G+ GSN G  N+TLK
Sbjct: 240 HGSTGGMSPQVQPRSQQLPGSTPDIKTEINPVLNPRAAGPEGSLMGIPGSNHGGNNLTLK 299

Query: 265 GWPLTGLDQFRSGLLQQQKSLTQP---YNQLQL------QQLMLQAQQNLASPSANDLES 315
           GWPLTGLDQ RSG+LQQQK   Q    + QLQ+      QQLML AQQNL SPS ND + 
Sbjct: 300 GWPLTGLDQLRSGILQQQKPFIQAPQSFPQLQMLTPQHQQQLML-AQQNLTSPSVND-DG 357

Query: 316 RKLRMLHNSRNMGLARDGSSNSVGDLVSTVGSAMQIISPGLPRGDN-DLLIKIQQ----- 369
           R+LRML N+R   +A+DG SNSVGD+V  VGS +Q  SP LPRGDN D+++KI+      
Sbjct: 358 RRLRMLLNTR---MAKDGLSNSVGDVVPNVGSPLQAGSPLLPRGDNTDMILKIKMAQLQQ 414

Query: 370 ---------QQQQLQHYSHHPLSSQQSQNSNPLLQQQDKILAGGSMTMDGSMSNTFQGND 420
                    QQQQ Q    H LS+QQSQ+SN  + QQ+KI   GS+TMDGSMSN+F+GND
Sbjct: 415 QQQQQQSSSQQQQQQQLQQHTLSNQQSQSSNHNMHQQEKIGGAGSVTMDGSMSNSFRGND 474

Query: 421 QASKNQIGRKRKQAVSSSGPANSSGTANTPGPTPSSPSSPST-HTPGDVISRPTLQHNGA 479
           Q SKNQ GRKRKQ VSSSGPANSSGTANT GP+PSS  S  + HTPGD IS P L H+G+
Sbjct: 475 QVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHTPGDAISMPALPHSGS 534

Query: 480 SSKSL-LMFGSDGMGSLTSAPNQL---------TDMDRFVDDGSLDDNVESFLSPDDADP 529
           SSK L +MF SDG G+ TS  NQL          DMDR+V+DGSLDDNV+SFLS DD DP
Sbjct: 535 SSKPLTMMFNSDGTGTFTSPSNQLWDDKELELQADMDRYVEDGSLDDNVDSFLSHDDGDP 594

Query: 530 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV 589
           RD VGR  +  KGFTFTE   + ASTSKV SCHFS DGKLL +GGHDKKAVLW TE+   
Sbjct: 595 RDPVGRCMDGSKGFTFTEVNSVRASTSKVSSCHFSSDGKLLVSGGHDKKAVLWYTENLKP 654

Query: 590 KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFH 649
           K++LEEH   +TDVRFSPS+ RLATSS DRTVRVWD +N  YSLRTFTGHS +VMSLDFH
Sbjct: 655 KTSLEEHAAIVTDVRFSPSMPRLATSSFDRTVRVWDADNHCYSLRTFTGHSASVMSLDFH 714

Query: 650 PSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 680
           P K+D +CSCD + EIRYW+I NGSCA VFK
Sbjct: 715 PKKDDFICSCDGDGEIRYWNITNGSCAAVFK 745

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357466351|ref|XP_003603460.1| NAD(P)H-quinone oxidoreductase subunit [Medicago truncatula] gi|355492508|gb|AES73711.1| NAD(P)H-quinone oxidoreductase subunit [Medicago truncatula]

 Score =  793 bits (2049), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 460/793 (58%), Positives = 539/793 (67%), Gaps = 116/793 (14%)

Query: 1   MSQNNWEADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFW 60
           MSQ NWEADKMLDVYI+DYL+KR L ASA+AFQ EGKVS+DPVAIDAPGGFLFEWWSVFW
Sbjct: 1   MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60

Query: 61  DIFIARTNEKHSESAASYIESQVIKARE-----------------------------QQQ 91
           DIFIARTNEKHSE AASYIE+Q+IKARE                              QQ
Sbjct: 61  DIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQPQPQQSQHAQQQQQQHMQMQQ 120

Query: 92  QQQQQHQKPQQHQQMQVQQLLLQRHAQQQQQQQRRDSTQHLNDTGDDL--RPGFAKAFTT 149
              Q+H + QQ QQ   QQ   Q    Q QQQQ RD T  LN + + L   P  A A  T
Sbjct: 121 LLMQRHAQQQQQQQQHQQQPQSQPQQPQPQQQQNRDRTHLLNGSANGLAGNPATANAIAT 180

Query: 150 KMYEDRLKKLPFQRDSLDDATIKPRLSDNMTQLLDPNHATLLKAAAIGSQPSGQTLHGTH 209
           KMYE+RLK  P QRDSLDDA +K R  +NM QLLDPNHA++LK+AA G QPSGQ LHGT 
Sbjct: 181 KMYEERLKGPP-QRDSLDDAAMKQRFGENMGQLLDPNHASILKSAAAGGQPSGQVLHGTA 239

Query: 210 -GVSQQVQSRSQQPPLSTQEVKTEMNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLKGWPL 268
            G+S QVQ+RSQQ P ST ++K+E+NP +NPRAAG EGSL+G+ GSNQG  N+TLKGWPL
Sbjct: 240 GGMSPQVQARSQQLPGSTTDIKSEINPVLNPRAAGPEGSLLGISGSNQGNNNLTLKGWPL 299

Query: 269 TGLDQFRSGLLQQQKSLT---QPYNQLQL------QQLMLQAQQNLASPSANDLESRKLR 319
           TGL+Q RSGLLQQQK      QP++QLQ+      QQLML AQQ+LASPSA++ ESR+LR
Sbjct: 300 TGLEQLRSGLLQQQKPYMQAPQPFHQLQMLTPQHQQQLML-AQQSLASPSASE-ESRRLR 357

Query: 320 MLHNSRNMGLARDGSSNSVGDLVSTVGSAMQIISPGLPRGDNDLLIKIQQQ--------- 370
           ML N+RN+GL +DG SN  GD++S VGS +    P  PRGD D+L+K++           
Sbjct: 358 MLLNNRNIGLNKDGLSNPGGDMLSNVGSPLHGGGPPFPRGDTDMLMKLKLAQLQQQQQQQ 417

Query: 371 --------QQQLQHYSHHPLSSQQSQNSNPLLQQQDKI-LAGGSMTMDGSMSNTFQGNDQ 421
                     Q Q    H LS+QQSQ SN  + QQDK+   GGS+TMDGSMSN+++GNDQ
Sbjct: 418 QHQQQSSINAQQQQLQQHALSNQQSQTSNHSMHQQDKVGGGGGSVTMDGSMSNSYRGNDQ 477

Query: 422 --------------------------------------------ASKNQIGRKRKQAVSS 437
                                                        SKNQ+GRKRKQ VSS
Sbjct: 478 IKVQPTEQSEEVLMFCGIPPFACFWSKDEILNDGWLHSPIFAIVVSKNQMGRKRKQPVSS 537

Query: 438 SGPANSSGTANTPG-PTPSSPSSPSTHTPGDVISRPTLQHNGASSKSLLMFGSDGMGSLT 496
           SGPANSSGTANT G    S+PS+PSTHTPGD +S P L HN +SSK L+MF +DG G+LT
Sbjct: 538 SGPANSSGTANTAGPSPSSAPSTPSTHTPGDAVSMPALPHNSSSSKPLMMFSTDGTGTLT 597

Query: 497 SAPNQL---------TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTE 547
           S  NQL          D+DRFVDDGSLDDNVESFLS DD DPRD VGR  +V KGFTF++
Sbjct: 598 SPSNQLWDDKDLELKADVDRFVDDGSLDDNVESFLSQDDTDPRDPVGRCMDVSKGFTFSD 657

Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP 607
              + AS+SK+  CHFS DGKLLA+GGHDKKAV+W  +S   K+ LEEH+  ITDVRFS 
Sbjct: 658 VNSVRASSSKIACCHFSSDGKLLASGGHDKKAVIWYADSLKQKAILEEHSALITDVRFSA 717

Query: 608 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY 667
           S+ RLATSS D+TVRVWD +NP YSLRTFTGHST+VMSLDFHP+K+DL+CSCD + EIRY
Sbjct: 718 SMPRLATSSFDKTVRVWDVDNPGYSLRTFTGHSTSVMSLDFHPNKDDLICSCDGDGEIRY 777

Query: 668 WSINNGSCAGVFK 680
           WSINNGSC  V K
Sbjct: 778 WSINNGSCVRVSK 790

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	743
ASPGD|ASPL0000038644	577	AN10391 [Emericella nidulans (	0.160	0.206	0.398	7.3e-14
TAIR|locus:2140215	333	WDR5b "AT4G02730" [Arabidopsis	0.215	0.480	0.277	1.3e-13
ASPGD|ASPL0000031743	954	AN8505 [Emericella nidulans (t	0.166	0.129	0.380	2.8e-13
ASPGD|ASPL0000006214	434	AN6385 [Emericella nidulans (t	0.153	0.262	0.398	3.7e-13
DICTYBASE|DDB_G0287273	335	wdr5 "WD40 repeat-containing p	0.156	0.346	0.322	4.1e-13
CGD|CAL0000165	798	orf19.536 [Candida albicans (t	0.154	0.144	0.358	4.5e-13
UNIPROTKB|H3BPK1	210	KATNB1 "Katanin p80 WD40 repea	0.179	0.633	0.340	1.9e-12
UNIPROTKB|F1S845	542	TAF5 "Uncharacterized protein"	0.161	0.221	0.362	2.5e-12
ZFIN|ZDB-GENE-031118-54	490	poc1b "POC1 centriolar protein	0.181	0.275	0.335	3e-12
UNIPROTKB|H3BPD8	208	KATNB1 "Katanin p80 WD40 repea	0.189	0.677	0.328	3.1e-12

ASPGD|ASPL0000038644 AN10391 [Emericella nidulans (taxid:162425)]

 Score = 212 (79.7 bits), Expect = 7.3e-14, P = 7.3e-14
 Identities = 49/123 (39%), Positives = 66/123 (53%)

Query:   558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 617
             V S  FS D +LLA+   D    +W T + +++ TLE H  W+  V FS     LA++S 
Sbjct:   424 VRSVIFSHDSQLLASASDDSTVKIWDTGTGSLQHTLEGHRDWVRSVIFSHDSRLLASASD 483

Query:   618 DRTVRVWDTENPDYSLRTFTGHSTTVMSLDF-HPSKEDLLCSCDNNSEIRYWSINNGSCA 676
             DRTVR+WDTE   +   T  GHS+ V S+ F H S+  LL S  N+  +R W I   S  
Sbjct:   484 DRTVRIWDTEKGSHK-HTLEGHSSLVTSVSFSHDSR--LLASASNDQTVRIWDIEARSLQ 540

Query:   677 GVF 679
               F
Sbjct:   541 HTF 543

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

TAIR|locus:2140215 WDR5b "AT4G02730" [Arabidopsis thaliana (taxid:3702)]

 Score = 203 (76.5 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 45/162 (27%), Positives = 78/162 (48%)

Query:   526 DADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585
             +A+     G S  V     +   + +   T+ +    FS DG LLA+   DK  +LW   
Sbjct:    14 NANSTGNAGTSGNVPIYKPYRHLKTLEGHTAAISCVKFSNDGNLLASASVDKTMILWSAT 73

Query:   586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS 645
             ++++    E H+  I+D+ +S       ++S D T+R+WD  +P   L+   GH+  V  
Sbjct:    74 NYSLIHRYEGHSSGISDLAWSSDSHYTCSASDDCTLRIWDARSPYECLKVLRGHTNFVFC 133

Query:   646 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNLMPI 687
             ++F+P   +L+ S   +  IR W +  G C  + K  + MPI
Sbjct:   134 VNFNPPS-NLIVSGSFDETIRIWEVKTGKCVRMIKA-HSMPI 173

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0008150 "biological_process" evidence=ND

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

ASPGD|ASPL0000031743 AN8505 [Emericella nidulans (taxid:162425)]

 Score = 210 (79.0 bits), Expect = 2.8e-13, P = 2.8e-13
 Identities = 48/126 (38%), Positives = 66/126 (52%)

Query:   549 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS 608
             Q +   +  V S  FSPDG+LLA+G  DK   LW   + +++ TL  H+ W+  V FSP 
Sbjct:   731 QTLEGHSGWVLSVAFSPDGRLLASGSFDKTVRLWDPATGSLQQTLRGHSNWVRSVAFSPD 790

Query:   609 LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW 668
                LA+ S D+TVR+WD        +T  GHS TV S+ F P    LL S   +  +R W
Sbjct:   791 GRLLASGSFDKTVRLWDPATGSLQ-QTLRGHSDTVRSVAFSPDGR-LLASGSFDKTVRLW 848

Query:   669 SINNGS 674
                 G+
Sbjct:   849 DPATGT 854

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

ASPGD|ASPL0000006214 AN6385 [Emericella nidulans (taxid:162425)]

 Score = 203 (76.5 bits), Expect = 3.7e-13, P = 3.7e-13
 Identities = 47/118 (39%), Positives = 68/118 (57%)

Query:   558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 617
             V S  FSPDG+LLA+G  +K   LW + +  +K TL  H+ W+  + FSP    LA+ S 
Sbjct:   158 VLSVAFSPDGQLLASGSAEKTIKLWDSATCGLKHTLGGHSNWVLPLVFSPDGRLLASGSN 217

Query:   618 DRTVRVWDTENPDYSLR-TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
             D T+++WD   P  SL+ T  GHS  + SL F P+ + LL S  +++ I+ W    GS
Sbjct:   218 DATIKLWDP--PSGSLKHTLEGHSNKIESLAFSPNGQ-LLASGSSDATIKLWDTATGS 272

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

DICTYBASE|DDB_G0287273 wdr5 "WD40 repeat-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 199 (75.1 bits), Expect = 4.1e-13, P = 4.1e-13
 Identities = 38/118 (32%), Positives = 64/118 (54%)

Query:   558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 617
             + S  FSPDGK LA+   DK   +W       + TLE H + I+D+ +S     + ++S 
Sbjct:    49 ISSVKFSPDGKWLASASADKTIKIWGAYDGKFERTLEGHKEGISDIAWSQDSKLICSASD 108

Query:   618 DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC 675
             D+T+++WD E+    ++T  GH   V  + F+P + +L+ S   +  +R W +N G C
Sbjct:   109 DKTIKIWDVESGKM-VKTLKGHKEYVFGVSFNP-QSNLIVSGSFDENVRIWDVNTGEC 164

GO:0051568 "histone H3-K4 methylation" evidence=ISS

GO:0042393 "histone binding" evidence=ISS

GO:0035097 "histone methyltransferase complex" evidence=ISS

GO:0005634 "nucleus" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

CGD|CAL0000165 orf19.536 [Candida albicans (taxid:5476)]

 Score = 207 (77.9 bits), Expect = 4.5e-13, P = 4.5e-13
 Identities = 42/117 (35%), Positives = 64/117 (54%)

Query:   563 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 622
             FSPD K L +   DK   LW  +++T   + + HTQ + DV+FSP      T+S D+T R
Sbjct:   525 FSPDNKYLLSCSEDKTVRLWSLDTYTALVSYKGHTQPVWDVKFSPLGHYFVTASHDQTAR 584

Query:   623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF 679
             +W T++  Y LR F GH   V  ++FHP+   +     + +  R W ++ G+C  VF
Sbjct:   585 LWATDHI-YPLRIFAGHINDVDCVEFHPNSNYVFTGSSDKT-CRMWDVHTGNCVRVF 639

GO:0000124 "SAGA complex" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0046695 "SLIK (SAGA-like) complex" evidence=IEA

GO:0005669 "transcription factor TFIID complex" evidence=IEA

GO:0032947 "protein complex scaffold" evidence=IEA

GO:0043130 "ubiquitin binding" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0016573 "histone acetylation" evidence=IEA

GO:0006366 "transcription from RNA polymerase II promoter" evidence=IEA

UNIPROTKB|H3BPK1 KATNB1 "Katanin p80 WD40 repeat-containing subunit B1" [Homo sapiens (taxid:9606)]

 Score = 176 (67.0 bits), Expect = 1.9e-12, P = 1.9e-12
 Identities = 47/138 (34%), Positives = 62/138 (44%)

Query:   544 TFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITD 602
             T  + Q I A  S V S       G+LLATGG D +  LW         +L  HT  +  
Sbjct:     9 TAWKLQEIVAHASNVSSLVLGKASGRLLATGGDDCRVNLWSINKPNCIMSLTGHTSPVES 68

Query:   603 VRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 662
             VR +     +   S   ++RVWD E     LRT  GH   + SLDFHP  E  + S   +
Sbjct:    69 VRLNTPEELIVAGSQSGSIRVWDLEAAKI-LRTLMGHKANICSLDFHPYGE-FVASGSQD 126

Query:   663 SEIRYWSINNGSCAGVFK 680
             + I+ W I    C  VF+
Sbjct:   127 TNIKLWDIRRKGC--VFR 142

GO:0008017 "microtubule binding" evidence=IEA

GO:0008352 "katanin complex" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0010942 "positive regulation of cell death" evidence=IEA

GO:0010976 "positive regulation of neuron projection development" evidence=IEA

GO:0030424 "axon" evidence=IEA

GO:0030426 "growth cone" evidence=IEA

GO:0030496 "midbody" evidence=IEA

GO:0043025 "neuronal cell body" evidence=IEA

GO:0045502 "dynein binding" evidence=IEA

GO:0051013 "microtubule severing" evidence=IEA

UNIPROTKB|F1S845 TAF5 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 196 (74.1 bits), Expect = 2.5e-12, Sum P(2) = 2.5e-12
 Identities = 46/127 (36%), Positives = 64/127 (50%)

Query:   563 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 622
             FSP G    +GGHD+ A LW T+ +        H   +   RF P+ + +AT SADRTVR
Sbjct:   353 FSPYGYYFVSGGHDRVARLWATDHYQPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVR 412

Query:   623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-- 680
             +WD  N +  +R FTGH   + SL F P+    L +   +  +  W I +G   G  K  
Sbjct:   413 LWDVLNGN-CVRIFTGHKGPIHSLTFSPNGR-FLATGATDGRVLLWDIGHGLMVGELKGH 470

Query:   681 ---VCNL 684
                VC+L
Sbjct:   471 TDTVCSL 477

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0044212 "transcription regulatory region DNA binding" evidence=IEA

GO:0033276 "transcription factor TFTC complex" evidence=IEA

GO:0015629 "actin cytoskeleton" evidence=IEA

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=IEA

GO:0005669 "transcription factor TFIID complex" evidence=IEA

GO:0004402 "histone acetyltransferase activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

ZFIN|ZDB-GENE-031118-54 poc1b "POC1 centriolar protein homolog B (Chlamydomonas)" [Danio rerio (taxid:7955)]

 Score = 196 (74.1 bits), Expect = 3.0e-12, P = 3.0e-12
 Identities = 46/137 (33%), Positives = 66/137 (48%)

Query:   547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS 606
             E  +  A T+ V S HFS DG+ L T   DK   +W  E      +L  HT W+   RFS
Sbjct:    94 ESTVFKAHTASVRSVHFSRDGQRLVTASDDKSVKVWGVERKKFLYSLNRHTNWVRCARFS 153

Query:   607 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 666
             P    +A+   DRTVR+WDT +    +  FT +  +   +DF+ S   +  S  +N+ I+
Sbjct:   154 PDGRLIASCGDDRTVRLWDTSSHQ-CINIFTDYGGSATFVDFNSSGTCIASSGADNT-IK 211

Query:   667 YWSINNGSCAGVFKVCN 683
              W I        +KV N
Sbjct:   212 IWDIRTNKLIQHYKVHN 228

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0042384 "cilium assembly" evidence=ISS

GO:0060287 "epithelial cilium movement involved in determination of left/right asymmetry" evidence=IMP

GO:0060271 "cilium morphogenesis" evidence=IMP

GO:0003014 "renal system process" evidence=IMP

GO:0030030 "cell projection organization" evidence=IEA

UNIPROTKB|H3BPD8 KATNB1 "Katanin p80 WD40 repeat-containing subunit B1" [Homo sapiens (taxid:9606)]

 Score = 174 (66.3 bits), Expect = 3.1e-12, P = 3.1e-12
 Identities = 50/152 (32%), Positives = 67/152 (44%)

Query:   530 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFT 588
             RDR  ++A V         + I A  S V S       G+LLATGG D +  LW      
Sbjct:     5 RDRCAQAAAVAA------VEEIVAHASNVSSLVLGKASGRLLATGGDDCRVNLWSINKPN 58

Query:   589 VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDF 648
                +L  HT  +  VR +     +   S   ++RVWD E     LRT  GH   + SLDF
Sbjct:    59 CIMSLTGHTSPVESVRLNTPEELIVAGSQSGSIRVWDLEAAKI-LRTLMGHKANICSLDF 117

Query:   649 HPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 680
             HP  E  + S   ++ I+ W I    C  VF+
Sbjct:   118 HPYGE-FVASGSQDTNIKLWDIRRKGC--VFR 146

GO:0008017 "microtubule binding" evidence=IEA

GO:0008352 "katanin complex" evidence=IEA

GO:0051013 "microtubule severing" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	743
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-30
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-30
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	7e-27
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-22
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	9e-18
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-16
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-14
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-14
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-10
smart00320	40	smart00320, WD40, WD40 repeats	1e-09
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	2e-09
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	5e-08
PTZ00420	568	PTZ00420, PTZ00420, coronin; Provisional	2e-06
pfam08513	27	pfam08513, LisH, LisH	1e-05
smart00320	40	smart00320, WD40, WD40 repeats	1e-04
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	1e-04
pfam13779	820	pfam13779, DUF4175, Domain of unknown function (DU	4e-04
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	5e-04
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	5e-04
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	8e-04
smart00667	34	smart00667, LisH, Lissencephaly type-1-like homolo	9e-04
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	9e-04
pfam13779	820	pfam13779, DUF4175, Domain of unknown function (DU	0.001
pfam07321	152	pfam07321, YscO, Type III secretion protein YscO	0.001
pfam13779	820	pfam13779, DUF4175, Domain of unknown function (DU	0.002
smart00320	40	smart00320, WD40, WD40 repeats	0.003
pfam13779	820	pfam13779, DUF4175, Domain of unknown function (DU	0.003
pfam09606	768	pfam09606, Med15, ARC105 or Med15 subunit of Media	0.003
pfam09606	768	pfam09606, Med15, ARC105 or Med15 subunit of Media	0.004
pfam09606	768	pfam09606, Med15, ARC105 or Med15 subunit of Media	0.004

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  120 bits (303), Expect = 3e-30
 Identities = 47/130 (36%), Positives = 69/130 (53%), Gaps = 2/130 (1%)

Query: 551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS 610
           +   T  V    FSPDGKLLATG  D    +W  E+  +  TL+ HT  + DV  S   +
Sbjct: 5   LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGT 64

Query: 611 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI 670
            LA+ S+D+T+R+WD E  +  +RT TGH++ V S+ F P    +L S   +  I+ W +
Sbjct: 65  YLASGSSDKTIRLWDLETGE-CVRTLTGHTSYVSSVAFSPDGR-ILSSSSRDKTIKVWDV 122

Query: 671 NNGSCAGVFK 680
             G C    +
Sbjct: 123 ETGKCLTTLR 132

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  120 bits (303), Expect = 4e-30
 Identities = 47/129 (36%), Positives = 70/129 (54%), Gaps = 2/129 (1%)

Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
           TS V S  FSPDG++L++   DK   +W  E+    +TL  HT W+  V FSP  + +A+
Sbjct: 93  TSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVAS 152

Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
           SS D T+++WD       + T TGH+  V S+ F P  E LL S  + + I+ W ++ G 
Sbjct: 153 SSQDGTIKLWDLRTG-KCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGT-IKLWDLSTGK 210

Query: 675 CAGVFKVCN 683
           C G  +   
Sbjct: 211 CLGTLRGHE 219

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  110 bits (278), Expect = 7e-27
 Identities = 44/137 (32%), Positives = 59/137 (43%), Gaps = 2/137 (1%)

Query: 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDV 603
           T      +   T  V S  FSPDG  +A+   D    LW   +    +TL  HT  +  V
Sbjct: 124 TGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSV 183

Query: 604 RFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 663
            FSP   +L +SS+D T+++WD       L T  GH   V S+ F P    LL S   + 
Sbjct: 184 AFSPDGEKLLSSSSDGTIKLWDLSTGK-CLGTLRGHENGVNSVAFSPDG-YLLASGSEDG 241

Query: 664 EIRYWSINNGSCAGVFK 680
            IR W +  G C     
Sbjct: 242 TIRVWDLRTGECVQTLS 258

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 97.0 bits (242), Expect = 4e-22
 Identities = 41/126 (32%), Positives = 58/126 (46%), Gaps = 2/126 (1%)

Query: 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDV 603
           T      +   T +V S  FSPDG+ L +   D    LW   +     TL  H   +  V
Sbjct: 166 TGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSV 225

Query: 604 RFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 663
            FSP    LA+ S D T+RVWD    +  ++T +GH+ +V SL + P  +  L S   + 
Sbjct: 226 AFSPDGYLLASGSEDGTIRVWDLRTGE-CVQTLSGHTNSVTSLAWSPDGKR-LASGSADG 283

Query: 664 EIRYWS 669
            IR W 
Sbjct: 284 TIRIWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 86.7 bits (213), Expect = 9e-18
 Identities = 44/120 (36%), Positives = 56/120 (46%), Gaps = 2/120 (1%)

Query: 563 FSPDGKLLATGGHDKKAVLWCTESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSADRTV 621
           FSPDG LLA+G  D    LW   S +    TL  H+  +  V FSP    LA+ S+D TV
Sbjct: 249 FSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTV 308

Query: 622 RVWDTENPD-YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 680
           R+WD E     S  T  GH   V SL F P    L+    ++  IR W +  G      +
Sbjct: 309 RLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLE 368

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 78.9 bits (195), Expect = 4e-16
 Identities = 31/91 (34%), Positives = 42/91 (46%), Gaps = 2/91 (2%)

Query: 590 KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFH 649
           + TL+ HT  +T V FSP    LAT S D T++VWD E  +  LRT  GH+  V  +   
Sbjct: 2   RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGEL-LRTLKGHTGPVRDVAAS 60

Query: 650 PSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 680
                L     + + IR W +  G C     
Sbjct: 61  ADGTYLASGSSDKT-IRLWDLETGECVRTLT 90

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 75.9 bits (185), Expect = 2e-14
 Identities = 47/134 (35%), Positives = 69/134 (51%), Gaps = 4/134 (2%)

Query: 544 TFTEFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLW-CTESFTVKSTLEEHTQWIT 601
           T      +   T  V S  FSPDG  L+A+G  D    LW  +    ++STL  H+  + 
Sbjct: 187 TGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVV 246

Query: 602 DVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN 661
              FSP  S LA+ S+D T+R+WD  +    LRT +GHS++V+S+ F P    LL S  +
Sbjct: 247 SS-FSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPD-GKLLASGSS 304

Query: 662 NSEIRYWSINNGSC 675
           +  +R W +  G  
Sbjct: 305 DGTVRLWDLETGKL 318

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 75.9 bits (185), Expect = 2e-14
 Identities = 53/252 (21%), Positives = 79/252 (31%), Gaps = 11/252 (4%)

Query: 497 SAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS 556
           S   + +++   ++  SL     S               S                    
Sbjct: 13  SKLLKKSELGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSLLLRGH------ED 66

Query: 557 KVESCHFSPDGKLLATGGHDKKAVLWC--TESFTVKSTLEEHTQWITDVRF-SPSLSRLA 613
            + S  FSPDG+LL +G  D    LW        +KS    H   ++ +   SP  + + 
Sbjct: 67  SITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSIL 126

Query: 614 T--SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 671
              SS D TV++WD   P   +RT  GHS +V SL F P  + L      +  I+ W + 
Sbjct: 127 LASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLR 186

Query: 672 NGSCAGVFKVCNLMPIILKGCFILNSIFNCYLLLHRIFLNLLSVSEWCNPDEISTSSWKD 731
            G               L        +         I L  LS  +         S    
Sbjct: 187 TGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVV 246

Query: 732 SCCSHRELYLYT 743
           S  S     L +
Sbjct: 247 SSFSPDGSLLAS 258

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 63.6 bits (153), Expect = 2e-10
 Identities = 44/123 (35%), Positives = 59/123 (47%), Gaps = 4/123 (3%)

Query: 551 IPASTSKVESCHFSPDGKLLATGG-HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL 609
           +      V S  FSPDG LL +GG  D    LW   +     TLE H+  +  V FSP  
Sbjct: 324 LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSN-VLSVSFSPDG 382

Query: 610 SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS 669
             +++ S D TVR+WD       LR   GH++ V SLDF P     L S  +++ IR W 
Sbjct: 383 RVVSSGSTDGTVRLWDLSTGS-LLRNLDGHTSRVTSLDFSPD-GKSLASGSSDNTIRLWD 440

Query: 670 INN 672
           +  
Sbjct: 441 LKT 443

Length = 466

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 53.9 bits (130), Expect = 1e-09
 Identities = 17/40 (42%), Positives = 24/40 (60%)

Query: 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625
           S  +  TL+ HT  +T V FSP    LA+ S D T+++WD
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 53.1 bits (128), Expect = 2e-09
 Identities = 19/39 (48%), Positives = 24/39 (61%)

Query: 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625
             +  TL+ HT  +T V FSP  + LA+ S D TVRVWD
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 55.9 bits (133), Expect = 5e-08
 Identities = 28/78 (35%), Positives = 45/78 (57%)

Query: 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS 615
           S V S  FSPDG+++++G  D    LW   + ++   L+ HT  +T + FSP    LA+ 
Sbjct: 371 SNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASG 430

Query: 616 SADRTVRVWDTENPDYSL 633
           S+D T+R+WD +    S+
Sbjct: 431 SSDNTIRLWDLKTSLKSV 448

Length = 466

>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional

 Score = 50.7 bits (121), Expect = 2e-06
 Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 8/88 (9%)

Query: 593 LEEHTQWITDVRFSPSLSR-LATSSADRTVRVWDTENPDYSLR-------TFTGHSTTVM 644
           L+ HT  I D++F+P  S  LA+ S D T+RVW+  + D S++          GH   + 
Sbjct: 70  LKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129

Query: 645 SLDFHPSKEDLLCSCDNNSEIRYWSINN 672
            +D++P    ++CS   +S +  W I N
Sbjct: 130 IIDWNPMNYYIMCSSGFDSFVNIWDIEN 157

Length = 568

>gnl|CDD|149534 pfam08513, LisH, LisH

 Score = 42.3 bits (101), Expect = 1e-05
 Identities = 11/27 (40%), Positives = 16/27 (59%)

Query: 10 KMLDVYIYDYLLKRKLHASAKAFQTEG 36
          + L+  IYDYL+K     +A+AF  E 
Sbjct: 1  EELNRLIYDYLVKSGYKETAEAFAKES 27

The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex. Length = 27

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 39.6 bits (93), Expect = 1e-04
 Identities = 15/39 (38%), Positives = 19/39 (48%)

Query: 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW 582
           +    + +   T  V S  FSPDGK LA+G  D    LW
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 39.3 bits (92), Expect = 1e-04
 Identities = 14/32 (43%), Positives = 17/32 (53%)

Query: 551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLW 582
           +   T  V S  FSPDG LLA+G  D    +W
Sbjct: 7   LKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38

Length = 39

>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175)

 Score = 43.4 bits (103), Expect = 4e-04
 Identities = 24/82 (29%), Positives = 27/82 (32%), Gaps = 8/82 (9%)

Query: 88  EQQQQQQQQHQKPQQHQQMQVQQLLLQRHAQQQQQQQRRDSTQHLNDTGDDLRPGFAKAF 147
           +Q Q  Q Q Q  QQ QQ Q QQ   Q    Q  Q    +  Q L D     R G     
Sbjct: 625 QQGQGGQGQGQPGQQGQQGQGQQQGQQGQGGQGGQGSLAERQQALRDELGRQRGGLPGMG 684

Query: 148 TTKMYEDRLKKLPFQRDSLDDA 169
                          RD+L  A
Sbjct: 685 GEAGEAA--------RDALGRA 698

Length = 820

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 43.0 bits (101), Expect = 5e-04
 Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 7/88 (7%)

Query: 600 ITDVRFSP-SLSRLATSSADRTVRVWD------TENPDYSLRTFTGHSTTVMSLDFHPSK 652
           I DV F+P    +L T+S D T+  W       T+N    +    GH+  V  + FHPS 
Sbjct: 78  IIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSA 137

Query: 653 EDLLCSCDNNSEIRYWSINNGSCAGVFK 680
            ++L S   +  +  W +  G    V K
Sbjct: 138 MNVLASAGADMVVNVWDVERGKAVEVIK 165

Length = 493

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 43.2 bits (102), Expect = 5e-04
 Identities = 15/51 (29%), Positives = 18/51 (35%)

Query: 81  SQVIKAREQQQQQQQQHQKPQQHQQMQVQQLLLQRHAQQQQQQQRRDSTQH 131
           SQ         Q  QQ    QQ Q   + Q +     Q  QQQQ+    Q 
Sbjct: 224 SQAPAQPPLPPQLPQQPPPLQQPQFPGLSQQMPPPPPQPPQQQQQPPQPQA 274

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 37.3 bits (87), Expect = 8e-04
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS 669
           LRT  GH+  V S+ F P   +LL S  ++  +R W 
Sbjct: 4   LRTLKGHTGPVTSVAFSPD-GNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|128913 smart00667, LisH, Lissencephaly type-1-like homology motif

 Score = 37.0 bits (87), Expect = 9e-04
 Identities = 9/30 (30%), Positives = 15/30 (50%)

Query: 10 KMLDVYIYDYLLKRKLHASAKAFQTEGKVS 39
            L+  I +YLL+     +A+  Q E  +S
Sbjct: 4  SELNRLILEYLLRNGYEETAETLQKESGLS 33

Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly. Length = 34

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 42.4 bits (99), Expect = 9e-04
 Identities = 36/109 (33%), Positives = 47/109 (43%), Gaps = 4/109 (3%)

Query: 564 SPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSR-LATSSADRTVR 622
           S D  LLA+G  D    LW         T++     I  V+F     R LA  SAD  V 
Sbjct: 585 SADPTLLASGSDDGSVKLWSINQGVSIGTIKTKAN-ICCVQFPSESGRSLAFGSADHKVY 643

Query: 623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 671
            +D  NP   L T  GHS TV  + F  S   +  S DN   ++ W ++
Sbjct: 644 YYDLRNPKLPLCTMIGHSKTVSYVRFVDSSTLVSSSTDNT--LKLWDLS 690

Length = 793

>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175)

 Score = 42.2 bits (100), Expect = 0.001
 Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 6/66 (9%)

Query: 87  REQQQQQQQQHQKPQQHQQMQVQQLLLQRHAQQQQ------QQQRRDSTQHLNDTGDDLR 140
           + Q  QQ QQ Q  QQ QQ Q  Q      A++QQ       +QR        + G+  R
Sbjct: 633 QGQPGQQGQQGQGQQQGQQGQGGQGGQGSLAERQQALRDELGRQRGGLPGMGGEAGEAAR 692

Query: 141 PGFAKA 146
               +A
Sbjct: 693 DALGRA 698

Length = 820

>gnl|CDD|148750 pfam07321, YscO, Type III secretion protein YscO

 Score = 39.7 bits (93), Expect = 0.001
 Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 1/65 (1%)

Query: 62  IFIARTNEKHSESAASYIESQVIKAREQQQQQQQQHQKPQQHQQMQVQQLLLQRHAQQQQ 121
           + + R NE   E   +  + ++   R++ +Q +QQ Q+ ++  Q +  +L  Q  A+ Q 
Sbjct: 76  VGLLRENEASLEQQLAEAKQRLEAERQRLRQARQQLQEARK-AQEKFAELARQEQAEAQA 134

Query: 122 QQQRR 126
           Q+Q  
Sbjct: 135 QRQYL 139

This family contains the bacterial type III secretion protein YscO, which is approximately 150 residues long. YscO has been shown to be required for high-level expression and secretion of the anti-host proteins V antigen and Yops in Yersinia pestis. Length = 152

>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175)

 Score = 41.0 bits (97), Expect = 0.002
 Identities = 11/44 (25%), Positives = 16/44 (36%)

Query: 87  REQQQQQQQQHQKPQQHQQMQVQQLLLQRHAQQQQQQQRRDSTQ 130
           R+ Q+Q   Q  + Q  Q    Q         QQ Q Q++    
Sbjct: 609 RDLQEQFNAQRGEQQGQQGQGGQGQGQPGQQGQQGQGQQQGQQG 652

Length = 820

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 35.4 bits (82), Expect = 0.003
 Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 1/37 (2%)

Query: 633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS 669
           L+T  GH+  V S+ F P     L S  ++  I+ W 
Sbjct: 5   LKTLKGHTGPVTSVAFSPD-GKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175)

 Score = 40.7 bits (96), Expect = 0.003
 Identities = 14/44 (31%), Positives = 18/44 (40%)

Query: 87  REQQQQQQQQHQKPQQHQQMQVQQLLLQRHAQQQQQQQRRDSTQ 130
             Q+ +QQ Q  +  Q Q    QQ    +  QQ QQ Q     Q
Sbjct: 616 NAQRGEQQGQQGQGGQGQGQPGQQGQQGQGQQQGQQGQGGQGGQ 659

Length = 820

>gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal

 Score = 40.8 bits (95), Expect = 0.003
 Identities = 46/228 (20%), Positives = 66/228 (28%), Gaps = 17/228 (7%)

Query: 89  QQQQQQQQHQKPQQHQQMQVQQLLLQRHAQQQQQQQRRDSTQHLNDTGDDLRPGFAKAFT 148
            Q QQQ Q    QQ      QQL  Q+  Q  QQQ   D+   +       + G      
Sbjct: 208 GQMQQQGQPGGQQQQNPQMQQQLQNQQQQQMDQQQGPADAQAQMG----QQQQGQGGMQP 263

Query: 149 TKMYEDRLKKLPFQRDSLDDATIKP--RLSDNMTQLLDPNHATLLKAAAIGSQPSGQTLH 206
            +M   +++    Q+             L + M Q+         +      Q  G    
Sbjct: 264 QQMQGGQMQVPMQQQPPQQQPQQSQLGMLPNQMQQMPGGGQGGPGQPMGPPPQRPGAVPQ 323

Query: 207 GTHGVSQQVQSRSQQPPLSTQEVKTEMNPTMNPRAAGSEGSLIGVHG-----SNQGAGNV 261
           G   V Q V S  QQ     +            +     G+    H           G +
Sbjct: 324 GGQAVQQGVMSAGQQQLKQMKLRNMRGQQQTQQQQQQQGGNHPAAHQQQMNQQVGQGGQM 383

Query: 262 TLKGWPLTGLDQFRSGLLQQQK------SLTQPYNQLQLQQLMLQAQQ 303
              G+     +Q   G    Q+      S   P  Q+Q  Q M Q  Q
Sbjct: 384 VALGYLNIQGNQGGLGANPMQQGQPGMMSSPSPVPQVQTNQSMPQPPQ 431

The approx. 70 residue Med15 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, Med15 is a critical transducer of gene activation signals that control early metazoan development. Length = 768

>gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal

 Score = 40.4 bits (94), Expect = 0.004
 Identities = 59/309 (19%), Positives = 78/309 (25%), Gaps = 38/309 (12%)

Query: 193 AAAIGSQPSGQTLHGTHGVSQQVQSRSQQPPLSTQEVKTEMNPTMNPRAAGSEGS----- 247
           +     QP GQ        S Q QS+        Q         MN    G  G      
Sbjct: 136 SRVGTMQPGGQAGGMMQQSSGQPQSQQPNQMGPQQGQAQGQAGGMNQGQQGPVGQQQPPQ 195

Query: 248 ----LIGVHGSNQGAGNVTLKGWPLTGLDQFRSGLLQQQKSLT-----------QPYNQL 292
                +   G           G       Q +  L  QQ+              Q   Q 
Sbjct: 196 MGQPGMPGGGGQGQMQQQGQPGGQQQQNPQMQQQLQNQQQQQMDQQQGPADAQAQMGQQQ 255

Query: 293 QLQQLMLQAQQNLAS--------PSANDLESRKLRMLHNSRNMGLARDGSSNSVGDLVST 344
           Q Q  M   Q             P     +  +L ML N   M     G     G  +  
Sbjct: 256 QGQGGMQPQQMQGGQMQVPMQQQPPQQQPQQSQLGMLPNQ--MQQMPGGGQGGPGQPMGP 313

Query: 345 VGSAMQIISPGLPRGDNDLL------IKIQQQQQQLQHYSHHPLSSQQSQNSNPLLQQQD 398
                  +  G       ++      +K  + +             QQ  N     QQQ 
Sbjct: 314 PPQRPGAVPQGGQAVQQGVMSAGQQQLKQMKLRNMRGQQQTQQQQQQQGGNHPAAHQQQM 373

Query: 399 KILAGGSMTMDGSMSNTFQGN-DQASKNQIGRKRKQAVSSSGPANSSGTANTPGPTPSSP 457
               G    M        QGN      N + + +   +SS  P     T  +  P P  P
Sbjct: 374 NQQVGQGGQMVALGYLNIQGNQGGLGANPMQQGQPGMMSSPSPVPQVQTNQSM-PQPPQP 432

Query: 458 SSPSTHTPG 466
           S PS   PG
Sbjct: 433 SVPSPGGPG 441

The approx. 70 residue Med15 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, Med15 is a critical transducer of gene activation signals that control early metazoan development. Length = 768

>gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal

 Score = 40.4 bits (94), Expect = 0.004
 Identities = 47/223 (21%), Positives = 65/223 (29%), Gaps = 17/223 (7%)

Query: 89  QQQQQQQQHQKPQQHQQMQVQQLLLQRHAQQQQQQQRRDSTQHLNDTGDDLRPGFAKAFT 148
           QQ   Q Q Q+P Q    Q  Q   Q      Q QQ     Q     G    PG      
Sbjct: 152 QQSSGQPQSQQPNQ-MGPQQGQAQGQ-AGGMNQGQQGPVGQQQPPQMGQPGMPGGGG--- 206

Query: 149 TKMYEDRLKKLPFQRDSLDDATIKPRLSDNMTQLLDPNHATLLKAAAIGSQP---SGQTL 205
                   ++         +  ++ +L +   Q +D         A +G Q     G   
Sbjct: 207 ---QGQMQQQGQPGGQQQQNPQMQQQLQNQQQQQMDQQQGPADAQAQMGQQQQGQGGMQP 263

Query: 206 HGTHGVSQQVQSRSQQPPLSTQEVKTEMNPT----MNPRAAGSEGSLIGVHGSNQGAGNV 261
               G   QV  + Q P    Q+ +  M P     M     G  G  +G      GA   
Sbjct: 264 QQMQGGQMQVPMQQQPPQQQPQQSQLGMLPNQMQQMPGGGQGGPGQPMGPPPQRPGAVPQ 323

Query: 262 TLKGWPLTGLDQFRSGLLQQQKSLTQPYNQLQLQQLMLQAQQN 304
             +      +   +  L Q +  L     Q Q QQ   Q   N
Sbjct: 324 GGQAVQQGVMSAGQQQLKQMK--LRNMRGQQQTQQQQQQQGGN 364

The approx. 70 residue Med15 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, Med15 is a critical transducer of gene activation signals that control early metazoan development. Length = 768

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	743
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	99.98
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	99.98
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	99.97
KOG0286	343	consensus G-protein beta subunit [General function	99.97
KOG0263	707	consensus Transcription initiation factor TFIID, s	99.96
KOG0279	315	consensus G protein beta subunit-like protein [Sig	99.96
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	99.95
KOG0279	315	consensus G protein beta subunit-like protein [Sig	99.95
KOG0263	707	consensus Transcription initiation factor TFIID, s	99.95
KOG0266	456	consensus WD40 repeat-containing protein [General	99.94
KOG0645	312	consensus WD40 repeat protein [General function pr	99.94
KOG0286	343	consensus G-protein beta subunit [General function	99.94
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.94
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.94
KOG0266	456	consensus WD40 repeat-containing protein [General	99.94
KOG0645	312	consensus WD40 repeat protein [General function pr	99.94
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.94
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.94
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.94
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	99.93
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.93
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.93
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.93
KOG0315	311	consensus G-protein beta subunit-like protein (con	99.92
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.92
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.92
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.92
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.92
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.92
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.92
PTZ00421	493	coronin; Provisional	99.91
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.91
PLN00181	793	protein SPA1-RELATED; Provisional	99.91
PTZ00420	568	coronin; Provisional	99.91
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.91
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.91
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.91
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	99.91
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.9
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.9
PLN00181	793	protein SPA1-RELATED; Provisional	99.9
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.89
PTZ00421	493	coronin; Provisional	99.89
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.89
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.89
KOG0643	327	consensus Translation initiation factor 3, subunit	99.89
KOG0315	311	consensus G-protein beta subunit-like protein (con	99.89
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.89
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.89
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.89
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.88
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.88
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.88
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.88
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.88
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.87
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.87
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.87
KOG0296	399	consensus Angio-associated migratory cell protein	99.87
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.87
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.87
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.86
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.86
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.86
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.86
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.86
PTZ00420	568	coronin; Provisional	99.86
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.85
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.85
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.85
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.85
KOG0641	350	consensus WD40 repeat protein [General function pr	99.85
KOG0289	506	consensus mRNA splicing factor [General function p	99.84
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.84
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.84
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.84
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.84
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.83
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.83
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.83
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.83
KOG0267	825	consensus Microtubule severing protein katanin p80	99.83
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.82
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.82
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.82
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.82
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.82
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.81
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.81
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.81
KOG0289	506	consensus mRNA splicing factor [General function p	99.81
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.81
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.81
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.8
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.8
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.8
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.8
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.8
KOG0296	399	consensus Angio-associated migratory cell protein	99.79
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.79
KOG0646	476	consensus WD40 repeat protein [General function pr	99.79
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.79
KOG0267	825	consensus Microtubule severing protein katanin p80	99.78
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.78
KOG0639	705	consensus Transducin-like enhancer of split protei	99.78
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.76
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.76
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.76
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.76
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.75
KOG0643	327	consensus Translation initiation factor 3, subunit	99.75
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.75
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.75
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.74
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.74
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.74
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.74
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.73
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.73
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.73
KOG1274	933	consensus WD40 repeat protein [General function pr	99.73
KOG2055	514	consensus WD40 repeat protein [General function pr	99.72
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.71
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.71
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.71
KOG0639	705	consensus Transducin-like enhancer of split protei	99.71
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.71
KOG1274	933	consensus WD40 repeat protein [General function pr	99.7
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.69
KOG2096	420	consensus WD40 repeat protein [General function pr	99.68
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.68
KOG4328	498	consensus WD40 protein [Function unknown]	99.68
KOG2048	691	consensus WD40 repeat protein [General function pr	99.67
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.67
KOG2096	420	consensus WD40 repeat protein [General function pr	99.66
KOG0646	476	consensus WD40 repeat protein [General function pr	99.64
KOG0641	350	consensus WD40 repeat protein [General function pr	99.64
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.63
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.63
KOG1273	405	consensus WD40 repeat protein [General function pr	99.63
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.63
KOG1273	405	consensus WD40 repeat protein [General function pr	99.62
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.62
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.61
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.61
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.59
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.59
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.59
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.59
KOG1539	910	consensus WD repeat protein [General function pred	99.59
COG2319	466	FOG: WD40 repeat [General function prediction only	99.58
KOG2048	691	consensus WD40 repeat protein [General function pr	99.58
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.58
KOG4328	498	consensus WD40 protein [Function unknown]	99.57
KOG0649	325	consensus WD40 repeat protein [General function pr	99.57
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.57
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.57
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.57
KOG1310	758	consensus WD40 repeat protein [General function pr	99.57
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.56
KOG1539	910	consensus WD repeat protein [General function pred	99.56
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.55
KOG1188	376	consensus WD40 repeat protein [General function pr	99.55
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.55
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.54
KOG4594	354	consensus Sequence-specific single-stranded-DNA-bi	99.53
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.53
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.52
COG2319	466	FOG: WD40 repeat [General function prediction only	99.49
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.49
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.49
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.49
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.48
KOG0649	325	consensus WD40 repeat protein [General function pr	99.47
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.45
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.44
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.43
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.42
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.42
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.42
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.41
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.41
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.4
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.39
KOG2055	514	consensus WD40 repeat protein [General function pr	99.38
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.36
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.36
PRK01742	429	tolB translocation protein TolB; Provisional	99.35
PRK11028	330	6-phosphogluconolactonase; Provisional	99.35
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.32
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.31
KOG1310	758	consensus WD40 repeat protein [General function pr	99.31
KOG4227	609	consensus WD40 repeat protein [General function pr	99.31
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.31
PRK11028	330	6-phosphogluconolactonase; Provisional	99.3
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.28
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.27
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.26
KOG1188	376	consensus WD40 repeat protein [General function pr	99.26
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.25
KOG4227	609	consensus WD40 repeat protein [General function pr	99.24
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.24
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.23
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.22
KOG1963	792	consensus WD40 repeat protein [General function pr	99.2
PRK01742	429	tolB translocation protein TolB; Provisional	99.18
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.17
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.16
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.16
KOG1963	792	consensus WD40 repeat protein [General function pr	99.15
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.15
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.12
KOG2139	445	consensus WD40 repeat protein [General function pr	99.11
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.11
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.09
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.09
PRK05137	435	tolB translocation protein TolB; Provisional	99.09
PRK02889	427	tolB translocation protein TolB; Provisional	99.09
PRK04922	433	tolB translocation protein TolB; Provisional	99.07
KOG1334	559	consensus WD40 repeat protein [General function pr	99.05
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.04
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.03
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.02
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.01
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.0
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.0
KOG1334	559	consensus WD40 repeat protein [General function pr	99.0
PRK02889	427	tolB translocation protein TolB; Provisional	98.99
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	98.97
PRK03629	429	tolB translocation protein TolB; Provisional	98.97
PRK03629	429	tolB translocation protein TolB; Provisional	98.97
KOG2139	445	consensus WD40 repeat protein [General function pr	98.94
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	98.94
PRK05137	435	tolB translocation protein TolB; Provisional	98.93
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.93
KOG1409	404	consensus Uncharacterized conserved protein, conta	98.93
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	98.92
PRK04922	433	tolB translocation protein TolB; Provisional	98.92
KOG2111	346	consensus Uncharacterized conserved protein, conta	98.91
PRK00178	430	tolB translocation protein TolB; Provisional	98.86
KOG2321	703	consensus WD40 repeat protein [General function pr	98.86
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.81
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	98.77
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.77
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	98.76
KOG4547	541	consensus WD40 repeat-containing protein [General	98.76
KOG0280	339	consensus Uncharacterized conserved protein [Amino	98.75
KOG2111	346	consensus Uncharacterized conserved protein, conta	98.75
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.74
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.73
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.72
PRK04792	448	tolB translocation protein TolB; Provisional	98.71
KOG2321	703	consensus WD40 repeat protein [General function pr	98.7
PRK01029	428	tolB translocation protein TolB; Provisional	98.7
KOG4547	541	consensus WD40 repeat-containing protein [General	98.7
PRK00178	430	tolB translocation protein TolB; Provisional	98.66
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.66
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.57
PRK04792	448	tolB translocation protein TolB; Provisional	98.56
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.53
PF08513	27	LisH: LisH; InterPro: IPR013720 The LisH motif is	98.51
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	98.49
PRK01029	428	tolB translocation protein TolB; Provisional	98.49
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.45
KOG2695	425	consensus WD40 repeat protein [General function pr	98.44
KOG2695	425	consensus WD40 repeat protein [General function pr	98.43
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.42
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.4
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	98.38
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.37
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.37
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.36
KOG2315	566	consensus Predicted translation initiation factor	98.35
KOG2315	566	consensus Predicted translation initiation factor	98.34
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.33
PRK04043	419	tolB translocation protein TolB; Provisional	98.32
KOG1409	404	consensus Uncharacterized conserved protein, conta	98.32
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.3
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.29
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.26
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.23
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.22
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.22
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.2
COG4946	668	Uncharacterized protein related to the periplasmic	98.2
PRK04043	419	tolB translocation protein TolB; Provisional	98.19
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.15
COG4946	668	Uncharacterized protein related to the periplasmic	98.13
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.11
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.1
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.08
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.08
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.07
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.06
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.01
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	97.98
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	97.97
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	97.94
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	97.9
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.87
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.86
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.84
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	97.8
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.77
KOG2041	1189	consensus WD40 repeat protein [General function pr	97.75
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	97.74
KOG2314	698	consensus Translation initiation factor 3, subunit	97.72
KOG1912	1062	consensus WD40 repeat protein [General function pr	97.71
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	97.62
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	97.59
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	97.58
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	97.56
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	97.49
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	97.49
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	97.45
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.41
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	97.38
KOG4532	344	consensus WD40-like repeat containing protein [Gen	97.38
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.34
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	97.3
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.29
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.29
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	97.21
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.21
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	97.19
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.19
KOG2314	698	consensus Translation initiation factor 3, subunit	97.18
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.15
smart00667	34	LisH Lissencephaly type-1-like homology motif. Alp	97.08
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	97.06
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.03
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.02
PRK02888	635	nitrous-oxide reductase; Validated	96.97
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	96.96
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	96.91
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	96.9
PRK02888	635	nitrous-oxide reductase; Validated	96.85
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	96.83
KOG1008	783	consensus Uncharacterized conserved protein, conta	96.77
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	96.73
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	96.69
KOG3621	726	consensus WD40 repeat-containing protein [General	96.67
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	96.66
COG3391	381	Uncharacterized conserved protein [Function unknow	96.56
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	96.52
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	96.52
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	96.5
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	96.42
KOG3621	726	consensus WD40 repeat-containing protein [General	96.41
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	96.34
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	96.33
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	96.17
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	96.06
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	96.01
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	95.97
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	95.94
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	95.83
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	95.76
COG3391	381	Uncharacterized conserved protein [Function unknow	95.65
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	95.63
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	95.53
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	95.51
PRK13616	591	lipoprotein LpqB; Provisional	95.42
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	95.37
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	95.22
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	95.2
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	95.14
KOG2395	644	consensus Protein involved in vacuole import and d	95.05
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	94.97
KOG2395	644	consensus Protein involved in vacuole import and d	94.94
KOG2444	238	consensus WD40 repeat protein [General function pr	94.56
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	94.53
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	94.43
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	94.4
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	94.37
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	94.31
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	93.98
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	93.91
PRK13616	591	lipoprotein LpqB; Provisional	93.89
KOG2444	238	consensus WD40 repeat protein [General function pr	93.88
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	93.63
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	93.54
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	93.51
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	93.24
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	92.78
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	92.47
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	92.47
PRK10115	686	protease 2; Provisional	92.45
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	92.45
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	92.39
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	92.18
PHA02713	557	hypothetical protein; Provisional	92.12
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	91.99
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	91.95
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	91.88
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	91.72
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	91.62
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	91.32
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	90.79
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	90.6
PHA02713	557	hypothetical protein; Provisional	90.36
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	89.47
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	89.26
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	89.18
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	89.09
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	89.04
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	88.31
PRK13684	334	Ycf48-like protein; Provisional	88.12
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	87.11
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	87.02
PRK10350	145	hypothetical protein; Provisional	87.01
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	86.71
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	86.59
PF08801	422	Nucleoporin_N: Nup133 N terminal like; InterPro: I	86.32
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	85.82
PRK13684	334	Ycf48-like protein; Provisional	85.63
PF14727	418	PHTB1_N: PTHB1 N-terminus	85.27
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	85.27
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	85.19
KOG2377	657	consensus Uncharacterized conserved protein [Funct	85.1
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	85.06
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	84.59
PHA03098	534	kelch-like protein; Provisional	84.49
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	84.32
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	83.9
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	83.83
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	83.77
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	83.06
COG5276	370	Uncharacterized conserved protein [Function unknow	82.97
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	82.83
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	82.78
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	82.62
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	82.43
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	82.35
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	82.27
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	82.19
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	82.1
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	82.03
PRK10115	686	protease 2; Provisional	81.8
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	81.38
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	81.27
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	80.91
COG5167	776	VID27 Protein involved in vacuole import and degra	80.74
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	80.55
PHA03098	534	kelch-like protein; Provisional	80.01

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=99.98  E-value=4e-32  Score=284.71  Aligned_cols=227  Identities=21%  Similarity=0.272  Sum_probs=200.3

Q ss_pred             CCCCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCC
Q 004603          477 NGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS  556 (743)
Q Consensus       477 ~~s~~~s~~~fs~dg~~~l~~~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~  556 (743)
                      .+...+..+.|+|..             .+.-+++++.|++|++|..                   ....++..+++|..
T Consensus       215 gH~~~v~~~~fhP~~-------------~~~~lat~s~Dgtvklw~~-------------------~~e~~l~~l~gH~~  262 (459)
T KOG0272|consen  215 GHTSRVGAAVFHPVD-------------SDLNLATASADGTVKLWKL-------------------SQETPLQDLEGHLA  262 (459)
T ss_pred             ccccceeeEEEccCC-------------CccceeeeccCCceeeecc-------------------CCCcchhhhhcchh
Confidence            445566666777642             1357899999999999933                   33367888999999


Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEE
Q 004603          557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF  636 (743)
Q Consensus       557 ~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l  636 (743)
                      .|..++|+|+|++|+|+|.|.+-++||++++..+...+||+..|.+|+|+|||.+++||+.|..-||||++++++ +..+
T Consensus       263 RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~-im~L  341 (459)
T KOG0272|consen  263 RVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRC-IMFL  341 (459)
T ss_pred             hheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcE-EEEe
Confidence            999999999999999999999999999999998888899999999999999999999999999999999999775 9999


Q ss_pred             ecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEeccCc----eeeec-CCCEEEEEecCCeEEEEecc--
Q 004603          637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNL----MPIIL-KGCFILNSIFNCYLLLHRIF--  709 (743)
Q Consensus       637 ~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~~~----i~~s~-~g~~l~sgs~Dg~I~vh~~~--  709 (743)
                      .+|...|.+|+|+|+|. .|+||+.|++++|||++..+++..+.+|..    +.|+| .|++|++++.|+++++|...  
T Consensus       342 ~gH~k~I~~V~fsPNGy-~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~  420 (459)
T KOG0272|consen  342 AGHIKEILSVAFSPNGY-HLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTW  420 (459)
T ss_pred             cccccceeeEeECCCce-EEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCc
Confidence            99999999999999974 788999999999999999999999998854    77887 89999999999999998643  


Q ss_pred             ----------cceEEEEecCCCCEEEEEeCCCeEEEeC
Q 004603          710 ----------LNLLSVSEWCNPDEISTSSWKDSCCSHR  737 (743)
Q Consensus       710 ----------v~~l~v~~~~~~~~laSgs~DG~V~iWd  737 (743)
                                .+++++....++..|+|+++|.+|++|.
T Consensus       421 ~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  421 SPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             ccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence                      3566666677788999999999999996

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=99.98  E-value=1.2e-31  Score=281.03  Aligned_cols=229  Identities=24%  Similarity=0.282  Sum_probs=202.5

Q ss_pred             ccCCCCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCC
Q 004603          475 QHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAS  554 (743)
Q Consensus       475 ~~~~s~~~s~~~fs~dg~~~l~~~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H  554 (743)
                      .+.+.++++.+.|+.|+               ..+++|||+|.+++|....                   ...+.+|.+|
T Consensus       171 Q~gd~rPis~~~fS~ds---------------~~laT~swsG~~kvW~~~~-------------------~~~~~~l~gH  216 (459)
T KOG0272|consen  171 QVGDTRPISGCSFSRDS---------------KHLATGSWSGLVKVWSVPQ-------------------CNLLQTLRGH  216 (459)
T ss_pred             hccCCCcceeeEeecCC---------------CeEEEeecCCceeEeecCC-------------------cceeEEEecc
Confidence            34566777788888877               5899999999999994433                   3678899999


Q ss_pred             CCCeEEEEEcCC--CCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCee
Q 004603          555 TSKVESCHFSPD--GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS  632 (743)
Q Consensus       555 ~~~V~siafspd--g~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~  632 (743)
                      ++.|.++.|+|.  +..+|||+.||+|++|++++..++..+++|...|..|+|||+|++|+|++.|.+-|+||++++.. 
T Consensus       217 ~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~E-  295 (459)
T KOG0272|consen  217 TSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSE-  295 (459)
T ss_pred             ccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchh-
Confidence            999999999995  66899999999999999999999999999999999999999999999999999999999999776 


Q ss_pred             EEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEeccCc----eeeecCCCEEEEEecCCeEEEEec
Q 004603          633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNL----MPIILKGCFILNSIFNCYLLLHRI  708 (743)
Q Consensus       633 l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~~~----i~~s~~g~~l~sgs~Dg~I~vh~~  708 (743)
                      +....||...|.+++|+|||. +++||+.|..-||||+|+|+|+..+.+|..    +.|+|+|-.|++|+.|++++||+.
T Consensus       296 lL~QEGHs~~v~~iaf~~DGS-L~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDL  374 (459)
T KOG0272|consen  296 LLLQEGHSKGVFSIAFQPDGS-LAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDL  374 (459)
T ss_pred             hHhhcccccccceeEecCCCc-eeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeee
Confidence            677889999999999999987 888999999999999999999999999854    789999999999999999999986


Q ss_pred             ccc--------------eEEEEecCCCCEEEEEeCCCeEEEeCCCc
Q 004603          709 FLN--------------LLSVSEWCNPDEISTSSWKDSCCSHRELY  740 (743)
Q Consensus       709 ~v~--------------~l~v~~~~~~~~laSgs~DG~V~iWd~~~  740 (743)
                      ...              .+.+.+ ..+.+|+|+|+|+++++|...-
T Consensus       375 R~r~~ly~ipAH~nlVS~Vk~~p-~~g~fL~TasyD~t~kiWs~~~  419 (459)
T KOG0272|consen  375 RMRSELYTIPAHSNLVSQVKYSP-QEGYFLVTASYDNTVKIWSTRT  419 (459)
T ss_pred             cccccceecccccchhhheEecc-cCCeEEEEcccCcceeeecCCC
Confidence            542              233333 2378999999999999997654

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=6.4e-30  Score=264.87  Aligned_cols=226  Identities=25%  Similarity=0.336  Sum_probs=191.4

Q ss_pred             CCCCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCC
Q 004603          477 NGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS  556 (743)
Q Consensus       477 ~~s~~~s~~~fs~dg~~~l~~~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~  556 (743)
                      .+...+.++.|+|++               ..+++|+-|.++++|+.                   .+.++..+.++|..
T Consensus       113 GH~e~Vl~~~fsp~g---------------~~l~tGsGD~TvR~WD~-------------------~TeTp~~t~KgH~~  158 (480)
T KOG0271|consen  113 GHGEAVLSVQFSPTG---------------SRLVTGSGDTTVRLWDL-------------------DTETPLFTCKGHKN  158 (480)
T ss_pred             CCCCcEEEEEecCCC---------------ceEEecCCCceEEeecc-------------------CCCCcceeecCCcc
Confidence            345577788899977               58999999999999944                   44467889999999


Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE-EEEEcccCCCEEEEEEcC-----CCCEEEEEeCCCeEEEEECCCCC
Q 004603          557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTV-KSTLEEHTQWITDVRFSP-----SLSRLATSSADRTVRVWDTENPD  630 (743)
Q Consensus       557 ~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~-i~~l~~H~~~V~~vafsp-----~~~~LaSgs~Dg~VrvWDl~~~~  630 (743)
                      .|.||+|+|||+.||+|+.||+|++||..+++. .+.|.+|+..|++++|.|     .+++|++++.||.|+|||+.-+.
T Consensus       159 WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~  238 (480)
T KOG0271|consen  159 WVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGT  238 (480)
T ss_pred             EEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCce
Confidence            999999999999999999999999999988765 468999999999999987     46789999999999999998644


Q ss_pred             eeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEeccCc----e-----------eeecCCCE--
Q 004603          631 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNL----M-----------PIILKGCF--  693 (743)
Q Consensus       631 ~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~~~----i-----------~~s~~g~~--  693 (743)
                       |+..+.+|+..|+||+|--  ..++++|+.|++|++|+...|++.+.+++|..    +           +|.+.+.+  
T Consensus       239 -~~~~lsgHT~~VTCvrwGG--~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~  315 (480)
T KOG0271|consen  239 -CVRTLSGHTASVTCVRWGG--EGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPK  315 (480)
T ss_pred             -EEEEeccCccceEEEEEcC--CceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCC
Confidence             6999999999999999974  45899999999999999999999999988732    2           23344444  


Q ss_pred             -----------------------EEEEecCCeEEEEecccc-------------eEEEEecCCCCEEEEEeCCCeEEEeC
Q 004603          694 -----------------------ILNSIFNCYLLLHRIFLN-------------LLSVSEWCNPDEISTSSWKDSCCSHR  737 (743)
Q Consensus       694 -----------------------l~sgs~Dg~I~vh~~~v~-------------~l~v~~~~~~~~laSgs~DG~V~iWd  737 (743)
                                             +++|++|.++.+|+....             +..+.+.++..+|++++.|..|++|+
T Consensus       316 ~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~  395 (480)
T KOG0271|consen  316 SFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWD  395 (480)
T ss_pred             ChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeee
Confidence                                   999999999999865421             23445556689999999999999997


Q ss_pred             CC
Q 004603          738 EL  739 (743)
Q Consensus       738 ~~  739 (743)
                      .+
T Consensus       396 g~  397 (480)
T KOG0271|consen  396 GR  397 (480)
T ss_pred             CC
Confidence            64

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=99.97  E-value=2.4e-28  Score=246.23  Aligned_cols=248  Identities=15%  Similarity=0.263  Sum_probs=201.0

Q ss_pred             cccCCCCCceEEEEecCCC-ccccccCc-------cccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCcee
Q 004603          474 LQHNGASSKSLLMFGSDGM-GSLTSAPN-------QLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTF  545 (743)
Q Consensus       474 l~~~~s~~~s~~~fs~dg~-~~l~~~~~-------~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~  545 (743)
                      ...+++-+..+++|..-.. +..+.+-.       .+.+...++++|+.|+...+|......             .....
T Consensus        69 ~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d-------------~~g~~  135 (343)
T KOG0286|consen   69 RIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRD-------------AEGNV  135 (343)
T ss_pred             eEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEeccccc-------------ccccc
Confidence            3445566667777765443 22222211       145667899999999988888554221             11233


Q ss_pred             eeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcC-CCCEEEEEeCCCeEEEE
Q 004603          546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVW  624 (743)
Q Consensus       546 ~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp-~~~~LaSgs~Dg~VrvW  624 (743)
                      ...+.+.+|++.+.||.|-+| ..|+|++.|.++.+||+++++.+..|.+|++.|.++++.| +++.|+||+.|++.++|
T Consensus       136 ~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklW  214 (343)
T KOG0286|consen  136 RVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLW  214 (343)
T ss_pred             eeeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeee
Confidence            456778999999999999875 4688999999999999999999999999999999999999 89999999999999999


Q ss_pred             ECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEec------cCceeeecCCCEEEEEe
Q 004603          625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKV------CNLMPIILKGCFILNSI  698 (743)
Q Consensus       625 Dl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~------~~~i~~s~~g~~l~sgs  698 (743)
                      |+|.+. ++.+|.+|++.|++|+|+|+|. -|++|++|+++|+||+|....+..|..      .+.+.|+..|++|++|.
T Consensus       215 D~R~~~-c~qtF~ghesDINsv~ffP~G~-afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy  292 (343)
T KOG0286|consen  215 DVRSGQ-CVQTFEGHESDINSVRFFPSGD-AFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGY  292 (343)
T ss_pred             eccCcc-eeEeecccccccceEEEccCCC-eeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeee
Confidence            999975 6999999999999999999986 778999999999999999988888764      36688999999999999


Q ss_pred             cCCeEEEEecc------------cceEEEEecCCCCEEEEEeCCCeEEEeC
Q 004603          699 FNCYLLLHRIF------------LNLLSVSEWCNPDEISTSSWKDSCCSHR  737 (743)
Q Consensus       699 ~Dg~I~vh~~~------------v~~l~v~~~~~~~~laSgs~DG~V~iWd  737 (743)
                      .|.++.+|+..            .++.++...+++..+++|+||.+|+||.
T Consensus       293 ~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  293 DDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             cCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence            99999997643            1233334444588999999999999994

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=99.96  E-value=1.2e-28  Score=275.89  Aligned_cols=239  Identities=18%  Similarity=0.328  Sum_probs=199.1

Q ss_pred             ccCCCCEEEEeeCCCcEEEEecCCCC----CCCCccccc--------cccCCCceeeeEEEeeCCCCCeEEEEEcCCCCE
Q 004603          502 LTDMDRFVDDGSLDDNVESFLSPDDA----DPRDRVGRS--------AEVGKGFTFTEFQLIPASTSKVESCHFSPDGKL  569 (743)
Q Consensus       502 l~~~~~~l~sGs~D~~V~iw~s~~~~----~~~~~~~~~--------~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~  569 (743)
                      +.+...++|+|-.|..|++|......    .........        .+..+........++.+|+++|+.+.|+|+.++
T Consensus       386 fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsPd~rf  465 (707)
T KOG0263|consen  386 FSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSPDRRF  465 (707)
T ss_pred             ecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeeecccccc
Confidence            45555799999999999999766321    000000000        111122233455668999999999999999999


Q ss_pred             EEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEe
Q 004603          570 LATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFH  649 (743)
Q Consensus       570 LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fs  649 (743)
                      |+++++|++||+|.+++..++..+.||..+|++|.|+|.|-+|||++.|++.++|.... ..+++.|.+|-+.|.|+.||
T Consensus       466 LlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~-~~PlRifaghlsDV~cv~FH  544 (707)
T KOG0263|consen  466 LLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDH-NKPLRIFAGHLSDVDCVSFH  544 (707)
T ss_pred             eeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeeccc-CCchhhhcccccccceEEEC
Confidence            99999999999999999999999999999999999999999999999999999999987 44699999999999999999


Q ss_pred             cCCCcEEEEEeCCCcEEEEECCCCeeeEEEeccCc----eeeecCCCEEEEEecCCeEEEEeccc------------ceE
Q 004603          650 PSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNL----MPIILKGCFILNSIFNCYLLLHRIFL------------NLL  713 (743)
Q Consensus       650 p~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~~~----i~~s~~g~~l~sgs~Dg~I~vh~~~v------------~~l  713 (743)
                      |+.. ++++||.|.+||+||+.+|.+++.|.+|..    ++++|+|.||++|+.|+.|.+|+...            ...
T Consensus       545 PNs~-Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~  623 (707)
T KOG0263|consen  545 PNSN-YVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIY  623 (707)
T ss_pred             Cccc-ccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCcee
Confidence            9965 777999999999999999999999999854    78999999999999999999998654            234


Q ss_pred             EEEecCCCCEEEEEeCCCeEEEeCCCccc
Q 004603          714 SVSEWCNPDEISTSSWKDSCCSHRELYLY  742 (743)
Q Consensus       714 ~v~~~~~~~~laSgs~DG~V~iWd~~~~~  742 (743)
                      .+.+..++..|++||.|.+|++||-...+
T Consensus       624 SlsFS~dg~vLasgg~DnsV~lWD~~~~~  652 (707)
T KOG0263|consen  624 SLSFSRDGNVLASGGADNSVRLWDLTKVI  652 (707)
T ss_pred             EEEEecCCCEEEecCCCCeEEEEEchhhc
Confidence            44555558999999999999999866543

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=99.96  E-value=8.7e-27  Score=233.94  Aligned_cols=242  Identities=21%  Similarity=0.295  Sum_probs=196.7

Q ss_pred             ccccCCCCCceEEEEecCCC-ccccccCccccCC------------CCEEEEeeCCCcEEEEecCCCCCCCCcccccccc
Q 004603          473 TLQHNGASSKSLLMFGSDGM-GSLTSAPNQLTDM------------DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEV  539 (743)
Q Consensus       473 ~l~~~~s~~~s~~~fs~dg~-~~l~~~~~~l~~~------------~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~  539 (743)
                      .+..++++++.++.|..... ..+..+...+.+|            ..+..++++|+.+++|+...+             
T Consensus        29 ~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g-------------   95 (315)
T KOG0279|consen   29 DILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATG-------------   95 (315)
T ss_pred             ceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCC-------------
Confidence            45667889999999987765 2333333344333            567788999999999955443             


Q ss_pred             CCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEccc--CCCEEEEEEcCC--CCEEEEE
Q 004603          540 GKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEH--TQWITDVRFSPS--LSRLATS  615 (743)
Q Consensus       540 ~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H--~~~V~~vafsp~--~~~LaSg  615 (743)
                            +....|.+|+..|.+++|++|.+.|++|+.|++|++||+.. .+..++.++  ++.|+||+|+|+  ..+|+++
T Consensus        96 ------~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g-~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~  168 (315)
T KOG0279|consen   96 ------ESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLG-VCKYTIHEDSHREWVSCVRFSPNESNPIIVSA  168 (315)
T ss_pred             ------cEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecc-cEEEEEecCCCcCcEEEEEEcCCCCCcEEEEc
Confidence                  56678899999999999999999999999999999999875 444455443  799999999997  7799999


Q ss_pred             eCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEecc---CceeeecCCC
Q 004603          616 SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVC---NLMPIILKGC  692 (743)
Q Consensus       616 s~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~---~~i~~s~~g~  692 (743)
                      +.|++|++||+++-+. ...+.+|.+.|+.++++|||. ++++|+.||.+.+||++.++++..+.+.   ..++|+|+.-
T Consensus       169 s~DktvKvWnl~~~~l-~~~~~gh~~~v~t~~vSpDGs-lcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fspnry  246 (315)
T KOG0279|consen  169 SWDKTVKVWNLRNCQL-RTTFIGHSGYVNTVTVSPDGS-LCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNRY  246 (315)
T ss_pred             cCCceEEEEccCCcch-hhccccccccEEEEEECCCCC-EEecCCCCceEEEEEccCCceeEeccCCCeEeeEEecCCce
Confidence            9999999999998554 778999999999999999987 8889999999999999999998888764   4578999887


Q ss_pred             EEEEEecCCeEEEEecc---------------------cceEEEEecCCCCEEEEEeCCCeEEEeC
Q 004603          693 FILNSIFNCYLLLHRIF---------------------LNLLSVSEWCNPDEISTSSWKDSCCSHR  737 (743)
Q Consensus       693 ~l~sgs~Dg~I~vh~~~---------------------v~~l~v~~~~~~~~laSgs~DG~V~iWd  737 (743)
                      +|+.+... .|+||+..                     ..++.+.+..++..|++|-.|+.|++|.
T Consensus       247 wL~~at~~-sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~q  311 (315)
T KOG0279|consen  247 WLCAATAT-SIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQ  311 (315)
T ss_pred             eEeeccCC-ceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEE
Confidence            77766554 48887643                     2345556666689999999999999995

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=1.7e-27  Score=246.86  Aligned_cols=241  Identities=16%  Similarity=0.280  Sum_probs=196.6

Q ss_pred             CCCCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCC--------------------------
Q 004603          477 NGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPR--------------------------  530 (743)
Q Consensus       477 ~~s~~~s~~~fs~dg~~~l~~~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~--------------------------  530 (743)
                      .+..-+.++.|+||+               ..|++|+.|+.|++|+...+....                          
T Consensus       155 gH~~WVlcvawsPDg---------------k~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~  219 (480)
T KOG0271|consen  155 GHKNWVLCVAWSPDG---------------KKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRR  219 (480)
T ss_pred             CCccEEEEEEECCCc---------------chhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccc
Confidence            344556666777766               366777777777777654443211                          


Q ss_pred             ------CccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEE
Q 004603          531 ------DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVR  604 (743)
Q Consensus       531 ------~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~va  604 (743)
                            |..+++|+...+   .++.++.+|+.+|+||+|--+| +|++|+.|++|++|+...|++.+.+++|...|..++
T Consensus       220 las~skDg~vrIWd~~~~---~~~~~lsgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~la  295 (480)
T KOG0271|consen  220 LASSSKDGSVRIWDTKLG---TCVRTLSGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLA  295 (480)
T ss_pred             eecccCCCCEEEEEccCc---eEEEEeccCccceEEEEEcCCc-eEEecCCCceEEEEEccchhHHHhhcccchheeeee
Confidence                  222233433322   5788899999999999997544 899999999999999999999999999999999998


Q ss_pred             Ec-----------CCCC-------------------------EEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEE
Q 004603          605 FS-----------PSLS-------------------------RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDF  648 (743)
Q Consensus       605 fs-----------p~~~-------------------------~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~f  648 (743)
                      .+           |.++                         .+++|++|.++.+|+....+.++..+.+|...|+.+.|
T Consensus       296 lsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~f  375 (480)
T KOG0271|consen  296 LSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSF  375 (480)
T ss_pred             ccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEE
Confidence            76           3233                         49999999999999998877788999999999999999


Q ss_pred             ecCCCcEEEEEeCCCcEEEEECCCCeeeEEEeccCc----eeeecCCCEEEEEecCCeEEEEeccc------------ce
Q 004603          649 HPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNL----MPIILKGCFILNSIFNCYLLLHRIFL------------NL  712 (743)
Q Consensus       649 sp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~~~----i~~s~~g~~l~sgs~Dg~I~vh~~~v------------~~  712 (743)
                      +||+. ++++++.|..|++||.++|+.+.+|++|-.    ++++.|.++|++|+.|.++++|+...            .+
T Consensus       376 SPd~r-~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEV  454 (480)
T KOG0271|consen  376 SPDGR-YIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEV  454 (480)
T ss_pred             CCCcc-EEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceE
Confidence            99986 778999999999999999999999998854    77889999999999999999987643            35


Q ss_pred             EEEEecCCCCEEEEEeCCCeEEEeC
Q 004603          713 LSVSEWCNPDEISTSSWKDSCCSHR  737 (743)
Q Consensus       713 l~v~~~~~~~~laSgs~DG~V~iWd  737 (743)
                      +++....++..+++|+.|..+++|.
T Consensus       455 f~vDwspDG~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  455 FAVDWSPDGQRVASGGKDKVLRLWR  479 (480)
T ss_pred             EEEEecCCCceeecCCCceEEEeec
Confidence            6666667799999999999999996

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=99.95  E-value=1.6e-26  Score=232.01  Aligned_cols=215  Identities=16%  Similarity=0.178  Sum_probs=185.2

Q ss_pred             CCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004603          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE  585 (743)
Q Consensus       506 ~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~  585 (743)
                      ...+.+++.|.++.+|....+              +......++.++||+..|..++.++||.+.++++.|+++++||+.
T Consensus        28 ~~~l~sasrDk~ii~W~L~~d--------------d~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~   93 (315)
T KOG0279|consen   28 SDILVSASRDKTIIVWKLTSD--------------DIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLA   93 (315)
T ss_pred             CceEEEcccceEEEEEEeccC--------------ccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEec
Confidence            378899999999999977655              222335688899999999999999999999999999999999999


Q ss_pred             CCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecC--CCCeEEEEEecCC-CcEEEEEeCC
Q 004603          586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGH--STTVMSLDFHPSK-EDLLCSCDNN  662 (743)
Q Consensus       586 t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h--~~~V~sl~fsp~g-~~lL~Sgs~D  662 (743)
                      +++..+.|.+|+..|.+++|++|.+.|+||+.|++|++|++...  |..++..+  +..|.+++|+|.. ..++++++.|
T Consensus        94 ~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~--ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~D  171 (315)
T KOG0279|consen   94 TGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV--CKYTIHEDSHREWVSCVRFSPNESNPIIVSASWD  171 (315)
T ss_pred             CCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeeccc--EEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCC
Confidence            99999999999999999999999999999999999999998752  34555443  7899999999985 5588899999


Q ss_pred             CcEEEEECCCCeeeEEEeccC----ceeeecCCCEEEEEecCCeEEEEeccc-------------ceEEEEecCCCCEEE
Q 004603          663 SEIRYWSINNGSCAGVFKVCN----LMPIILKGCFILNSIFNCYLLLHRIFL-------------NLLSVSEWCNPDEIS  725 (743)
Q Consensus       663 g~IrvWDl~tg~~v~~~~~~~----~i~~s~~g~~l~sgs~Dg~I~vh~~~v-------------~~l~v~~~~~~~~la  725 (743)
                      ++|+|||+++-+....+.+|+    .+.++|||..+++|+.||.+.+|+...             ..++|.+   ..+.+
T Consensus       172 ktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fsp---nrywL  248 (315)
T KOG0279|consen  172 KTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSP---NRYWL  248 (315)
T ss_pred             ceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCCCeEeeEEecC---CceeE
Confidence            999999999999988888874    478999999999999999999988643             2333332   67888


Q ss_pred             EEeCCCeEEEeCCC
Q 004603          726 TSSWKDSCCSHREL  739 (743)
Q Consensus       726 Sgs~DG~V~iWd~~  739 (743)
                      +...+..|+|||..
T Consensus       249 ~~at~~sIkIwdl~  262 (315)
T KOG0279|consen  249 CAATATSIKIWDLE  262 (315)
T ss_pred             eeccCCceEEEecc
Confidence            88888899999864

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=99.95  E-value=1.7e-27  Score=266.70  Aligned_cols=188  Identities=28%  Similarity=0.405  Sum_probs=174.0

Q ss_pred             ccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 004603          502 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVL  581 (743)
Q Consensus       502 l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~I  581 (743)
                      +.+.++||.++|.|.+|++|                   .-.++..+-.++||..+|+++.|+|.|-+|||||.|++.++
T Consensus       459 FsPd~rfLlScSED~svRLW-------------------sl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArL  519 (707)
T KOG0263|consen  459 FSPDRRFLLSCSEDSSVRLW-------------------SLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARL  519 (707)
T ss_pred             ecccccceeeccCCcceeee-------------------ecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeee
Confidence            34445899999999999999                   44556777888999999999999999999999999999999


Q ss_pred             EECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeC
Q 004603          582 WCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN  661 (743)
Q Consensus       582 Wd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~  661 (743)
                      |..+..++++.|.+|-+.|.|+.|||+..+++|||.|.+||+||+.++.. ++.|.||.++|.+|+|+|+|. +|++|+.
T Consensus       520 Ws~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~-VRiF~GH~~~V~al~~Sp~Gr-~LaSg~e  597 (707)
T KOG0263|consen  520 WSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNS-VRIFTGHKGPVTALAFSPCGR-YLASGDE  597 (707)
T ss_pred             eecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcE-EEEecCCCCceEEEEEcCCCc-eEeeccc
Confidence            99999999999999999999999999999999999999999999999775 999999999999999999987 7789999


Q ss_pred             CCcEEEEECCCCeeeEEEeccCc----eeeecCCCEEEEEecCCeEEEEeccc
Q 004603          662 NSEIRYWSINNGSCAGVFKVCNL----MPIILKGCFILNSIFNCYLLLHRIFL  710 (743)
Q Consensus       662 Dg~IrvWDl~tg~~v~~~~~~~~----i~~s~~g~~l~sgs~Dg~I~vh~~~v  710 (743)
                      |+.|+|||+.+++.+..+.+|+.    +.|+.+|..|++|+.|+.|++|+...
T Consensus       598 d~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~  650 (707)
T KOG0263|consen  598 DGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK  650 (707)
T ss_pred             CCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence            99999999999999999998854    77999999999999999999998654

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.94  E-value=1.1e-25  Score=255.05  Aligned_cols=227  Identities=26%  Similarity=0.410  Sum_probs=192.0

Q ss_pred             CCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCe
Q 004603          479 ASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKV  558 (743)
Q Consensus       479 s~~~s~~~fs~dg~~~l~~~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V  558 (743)
                      ...+.++.|++++               +++++++.|+.+++|......+                 .....+.+|...|
T Consensus       159 ~~sv~~~~fs~~g---------------~~l~~~~~~~~i~~~~~~~~~~-----------------~~~~~l~~h~~~v  206 (456)
T KOG0266|consen  159 CPSVTCVDFSPDG---------------RALAAASSDGLIRIWKLEGIKS-----------------NLLRELSGHTRGV  206 (456)
T ss_pred             cCceEEEEEcCCC---------------CeEEEccCCCcEEEeecccccc-----------------hhhccccccccce
Confidence            4567778888877               5799999999999996632210                 2445558999999


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEEC-CCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEe
Q 004603          559 ESCHFSPDGKLLATGGHDKKAVLWCT-ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT  637 (743)
Q Consensus       559 ~siafspdg~~LaSgs~Dg~V~IWd~-~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~  637 (743)
                      .+|+|+|+++++++|+.|++|+|||+ ..+..++++.+|...|++++|+|+++++++|+.|++|||||+++++ ++..+.
T Consensus       207 ~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~-~~~~l~  285 (456)
T KOG0266|consen  207 SDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGE-CVRKLK  285 (456)
T ss_pred             eeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCe-EEEeee
Confidence            99999999999999999999999999 5568999999999999999999999999999999999999999854 699999


Q ss_pred             cCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCe--eeEEEecc------CceeeecCCCEEEEEecCCeEEEEecc
Q 004603          638 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS--CAGVFKVC------NLMPIILKGCFILNSIFNCYLLLHRIF  709 (743)
Q Consensus       638 ~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~--~v~~~~~~------~~i~~s~~g~~l~sgs~Dg~I~vh~~~  709 (743)
                      +|...|++++|.+++. +|++++.|+.|+|||+.++.  |+..+..+      ..+.|+|++.|+++++.|+.+++|+..
T Consensus       286 ~hs~~is~~~f~~d~~-~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~  364 (456)
T KOG0266|consen  286 GHSDGISGLAFSPDGN-LLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLR  364 (456)
T ss_pred             ccCCceEEEEECCCCC-EEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEcc
Confidence            9999999999999987 56677889999999999999  55666543      346788999999999999999998765


Q ss_pred             cc---------------eEEEEecCCCCEEEEEeCCCeEEEeCCC
Q 004603          710 LN---------------LLSVSEWCNPDEISTSSWKDSCCSHREL  739 (743)
Q Consensus       710 v~---------------~l~v~~~~~~~~laSgs~DG~V~iWd~~  739 (743)
                      ..               .+.+.....+.++++|+.|+.|++|+..
T Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~  409 (456)
T KOG0266|consen  365 SGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSS  409 (456)
T ss_pred             CCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCC
Confidence            21               1122223457899999999999999875

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=2.6e-25  Score=222.52  Aligned_cols=213  Identities=21%  Similarity=0.288  Sum_probs=174.0

Q ss_pred             CCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004603          505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT  584 (743)
Q Consensus       505 ~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~  584 (743)
                      +.++|+++|+|.++.+|.-                 ....++++.+++||...|.|++|+++|++||+++.|+.|-||.+
T Consensus        72 ~g~~La~aSFD~t~~Iw~k-----------------~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~  134 (312)
T KOG0645|consen   72 HGRYLASASFDATVVIWKK-----------------EDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEI  134 (312)
T ss_pred             CCcEEEEeeccceEEEeec-----------------CCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEe
Confidence            4479999999999999932                 34467889999999999999999999999999999999999998


Q ss_pred             CC---CeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCC--CCeeEEEEecCCCCeEEEEEecCCCcEEEEE
Q 004603          585 ES---FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN--PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC  659 (743)
Q Consensus       585 ~t---~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~--~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sg  659 (743)
                      ..   .+++..+.+|+..|..|.|||...+|+|++.|.+|++|+-..  .-.|+.++.+|+..|.+++|++.|. -|++|
T Consensus       135 deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~-rl~s~  213 (312)
T KOG0645|consen  135 DEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGS-RLVSC  213 (312)
T ss_pred             cCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCc-eEEEe
Confidence            63   568889999999999999999999999999999999998662  2357899999999999999999985 56799


Q ss_pred             eCCCcEEEEECCCCeeeEEEeccCceeeecCCCEEEEEecCCeEEE---------------------EecccceEEEEec
Q 004603          660 DNNSEIRYWSINNGSCAGVFKVCNLMPIILKGCFILNSIFNCYLLL---------------------HRIFLNLLSVSEW  718 (743)
Q Consensus       660 s~Dg~IrvWDl~tg~~v~~~~~~~~i~~s~~g~~l~sgs~Dg~I~v---------------------h~~~v~~l~v~~~  718 (743)
                      +.|++|+||-..+.-....-.....+++.  ...|++++.|+.|++                     |...++.+.|.+.
T Consensus       214 sdD~tv~Iw~~~~~~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~  291 (312)
T KOG0645|consen  214 SDDGTVSIWRLYTDLSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPK  291 (312)
T ss_pred             cCCcceEeeeeccCcchhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCC
Confidence            99999999986532111000001112333  567889999999888                     5556677777762


Q ss_pred             CCCCEEEEEeCCCeEEEeCC
Q 004603          719 CNPDEISTSSWKDSCCSHRE  738 (743)
Q Consensus       719 ~~~~~laSgs~DG~V~iWd~  738 (743)
                       ..+.|++||.||.|++|.-
T Consensus       292 -~~~~L~s~~DDG~v~~W~l  310 (312)
T KOG0645|consen  292 -VSNRLASGGDDGIVNFWEL  310 (312)
T ss_pred             -CCCceeecCCCceEEEEEe
Confidence             2679999999999999963

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=99.94  E-value=5e-25  Score=222.37  Aligned_cols=228  Identities=23%  Similarity=0.345  Sum_probs=196.0

Q ss_pred             ccCCCCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCC
Q 004603          475 QHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAS  554 (743)
Q Consensus       475 ~~~~s~~~s~~~fs~dg~~~l~~~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H  554 (743)
                      ...+...+.++.|++|.               +.++++|.||.+-+|++                   .+...++.+.-.
T Consensus        51 LkGH~~Ki~~~~ws~Ds---------------r~ivSaSqDGklIvWDs-------------------~TtnK~haipl~   96 (343)
T KOG0286|consen   51 LKGHLNKIYAMDWSTDS---------------RRIVSASQDGKLIVWDS-------------------FTTNKVHAIPLP   96 (343)
T ss_pred             ecccccceeeeEecCCc---------------CeEEeeccCCeEEEEEc-------------------ccccceeEEecC
Confidence            34555678888999877               68999999999999944                   334556777778


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC------eEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004603          555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESF------TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN  628 (743)
Q Consensus       555 ~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~------~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~  628 (743)
                      +..|..|+|+|.|+++|+|+-|+.+.||++.+.      +..+.+.+|++.+.|+.|-+| ..|+|++.|.+.-+||+++
T Consensus        97 s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~  175 (343)
T KOG0286|consen   97 SSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIET  175 (343)
T ss_pred             ceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEccc
Confidence            889999999999999999999999999999854      456778999999999999874 6789999999999999999


Q ss_pred             CCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEeccC----ceeeecCCCEEEEEecCCeEE
Q 004603          629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCN----LMPIILKGCFILNSIFNCYLL  704 (743)
Q Consensus       629 ~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~~----~i~~s~~g~~l~sgs~Dg~I~  704 (743)
                      +.. +..|.+|.+.|.+|++.|...+.|++|+-|+..++||+|.+.|+.+|.+|.    .+.|.|+|.-+++|++|++.+
T Consensus       176 g~~-~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcR  254 (343)
T KOG0286|consen  176 GQQ-TQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCR  254 (343)
T ss_pred             ceE-EEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeE
Confidence            776 899999999999999999656688899999999999999999999999984    488999999999999999999


Q ss_pred             EEeccc--------------ceEEEEecCCCCEEEEEeCCCeEEEeCC
Q 004603          705 LHRIFL--------------NLLSVSEWCNPDEISTSSWKDSCCSHRE  738 (743)
Q Consensus       705 vh~~~v--------------~~l~v~~~~~~~~laSgs~DG~V~iWd~  738 (743)
                      +++..-              ....+.+...+.++++|..|.+|.+||.
T Consensus       255 lyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDt  302 (343)
T KOG0286|consen  255 LYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDT  302 (343)
T ss_pred             EEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeec
Confidence            966542              1223333444889999999999999986

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.94  E-value=1.2e-25  Score=231.70  Aligned_cols=211  Identities=18%  Similarity=0.258  Sum_probs=183.0

Q ss_pred             CCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004603          505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT  584 (743)
Q Consensus       505 ~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~  584 (743)
                      .+.|+++|+.|+++++|+...+                   ....++.||-..|..+++|+--.++++++.|+.|+.||+
T Consensus       162 ~n~wf~tgs~DrtikIwDlatg-------------------~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDL  222 (460)
T KOG0285|consen  162 GNEWFATGSADRTIKIWDLATG-------------------QLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDL  222 (460)
T ss_pred             CceeEEecCCCceeEEEEcccC-------------------eEEEeecchhheeeeeeecccCceEEEecCCCeeEEEec
Confidence            3479999999999999966554                   567788999999999999999999999999999999999


Q ss_pred             CCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCc
Q 004603          585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE  664 (743)
Q Consensus       585 ~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~  664 (743)
                      +..+.++.+.||-..|+|++.+|.-+.|+||+.|.++||||+|+.. .+.++.||...|.+|.+.|..+.+ ++|+.|++
T Consensus       223 e~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~-~V~~l~GH~~~V~~V~~~~~dpqv-it~S~D~t  300 (460)
T KOG0285|consen  223 EYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRA-SVHVLSGHTNPVASVMCQPTDPQV-ITGSHDST  300 (460)
T ss_pred             hhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccc-eEEEecCCCCcceeEEeecCCCce-EEecCCce
Confidence            9999999999999999999999999999999999999999999855 599999999999999999887754 59999999


Q ss_pred             EEEEECCCCeeeEEEeccC----ceeeecCCCEEEEEecCCeEEEEe--------------cccceEEEEecCCCCEEEE
Q 004603          665 IRYWSINNGSCAGVFKVCN----LMPIILKGCFILNSIFNCYLLLHR--------------IFLNLLSVSEWCNPDEIST  726 (743)
Q Consensus       665 IrvWDl~tg~~v~~~~~~~----~i~~s~~g~~l~sgs~Dg~I~vh~--------------~~v~~l~v~~~~~~~~laS  726 (743)
                      ||+||++.|+...++..|.    +++++|....+++++.|. |+-|+              ..+..+.+..   .+++++
T Consensus       301 vrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~nlsgh~~iintl~~ns---D~v~~~  376 (460)
T KOG0285|consen  301 VRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQNLSGHNAIINTLSVNS---DGVLVS  376 (460)
T ss_pred             EEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCcc-ceeccCCccchhhccccccceeeeeeecc---CceEEE
Confidence            9999999999998888763    467889999999998885 33333              3334444433   569999


Q ss_pred             EeCCCeEEEeCCCc
Q 004603          727 SSWKDSCCSHRELY  740 (743)
Q Consensus       727 gs~DG~V~iWd~~~  740 (743)
                      |+.+|.+.+||-+-
T Consensus       377 G~dng~~~fwdwks  390 (460)
T KOG0285|consen  377 GGDNGSIMFWDWKS  390 (460)
T ss_pred             cCCceEEEEEecCc
Confidence            99999999998653

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.94  E-value=1.7e-26  Score=241.54  Aligned_cols=223  Identities=21%  Similarity=0.354  Sum_probs=191.6

Q ss_pred             CCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCe
Q 004603          479 ASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKV  558 (743)
Q Consensus       479 s~~~s~~~fs~dg~~~l~~~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V  558 (743)
                      ...+..+.|.|+|               +.|.+|+..|.+.+|                   .+..+.....+.+|.++|
T Consensus        96 kc~V~~v~WtPeG---------------RRLltgs~SGEFtLW-------------------Ng~~fnFEtilQaHDs~V  141 (464)
T KOG0284|consen   96 KCPVNVVRWTPEG---------------RRLLTGSQSGEFTLW-------------------NGTSFNFETILQAHDSPV  141 (464)
T ss_pred             ccceeeEEEcCCC---------------ceeEeecccccEEEe-------------------cCceeeHHHHhhhhcccc
Confidence            3456677888888               678999999999999                   555666667788999999


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEccc-CCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEe
Q 004603          559 ESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEH-TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT  637 (743)
Q Consensus       559 ~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H-~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~  637 (743)
                      .++.|++++.++++|+.+|.|++|+.. ...+..+.+| ...|++++|+|+...|+||+.||+|+|||.+..+. -+.+.
T Consensus       142 r~m~ws~~g~wmiSgD~gG~iKyWqpn-mnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~ke-e~vL~  219 (464)
T KOG0284|consen  142 RTMKWSHNGTWMISGDKGGMIKYWQPN-MNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKE-ERVLR  219 (464)
T ss_pred             eeEEEccCCCEEEEcCCCceEEecccc-hhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCch-hheec
Confidence            999999999999999999999999965 3444455555 48999999999999999999999999999988665 56789


Q ss_pred             cCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEeccCc----eeeecCCCEEEEEecCCeEEEEec-----
Q 004603          638 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNL----MPIILKGCFILNSIFNCYLLLHRI-----  708 (743)
Q Consensus       638 ~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~~~----i~~s~~g~~l~sgs~Dg~I~vh~~-----  708 (743)
                      ||.-.|.+++|||... ++++++.|..|++||.+++.|+.++.+|..    +.|.++++||++++.|..+++.|+     
T Consensus       220 GHgwdVksvdWHP~kg-LiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkE  298 (464)
T KOG0284|consen  220 GHGWDVKSVDWHPTKG-LIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKE  298 (464)
T ss_pred             cCCCCcceeccCCccc-eeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHH
Confidence            9999999999999855 888999999999999999999999988744    568899999999999999999554     


Q ss_pred             ---------ccceEEEEecCCCCEEEEEeCCCeEEEeCCC
Q 004603          709 ---------FLNLLSVSEWCNPDEISTSSWKDSCCSHREL  739 (743)
Q Consensus       709 ---------~v~~l~v~~~~~~~~laSgs~DG~V~iWd~~  739 (743)
                               .+..+.|.+.. .++|.+|++||.|..|.-.
T Consensus       299 l~~~r~Hkkdv~~~~WhP~~-~~lftsgg~Dgsvvh~~v~  337 (464)
T KOG0284|consen  299 LFTYRGHKKDVTSLTWHPLN-ESLFTSGGSDGSVVHWVVG  337 (464)
T ss_pred             HHHhhcchhhheeecccccc-ccceeeccCCCceEEEecc
Confidence                     45667777665 7899999999999999654

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.94  E-value=7.5e-25  Score=248.40  Aligned_cols=218  Identities=23%  Similarity=0.350  Sum_probs=185.1

Q ss_pred             CCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004603          505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT  584 (743)
Q Consensus       505 ~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~  584 (743)
                      ..+++++++.|.++++|+...                  ....++++++|...|+||+|+|++++|++|+.|++|+|||+
T Consensus       214 d~~~l~s~s~D~tiriwd~~~------------------~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~  275 (456)
T KOG0266|consen  214 DGSYLLSGSDDKTLRIWDLKD------------------DGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDV  275 (456)
T ss_pred             CCcEEEEecCCceEEEeeccC------------------CCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEec
Confidence            346999999999999995522                  22577889999999999999999999999999999999999


Q ss_pred             CCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe-eEEEEecCCCC--eEEEEEecCCCcEEEEEeC
Q 004603          585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY-SLRTFTGHSTT--VMSLDFHPSKEDLLCSCDN  661 (743)
Q Consensus       585 ~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~-~l~~l~~h~~~--V~sl~fsp~g~~lL~Sgs~  661 (743)
                      ++++++..+.+|...|++++|++++.+|++++.|+.|+|||+.++.. ++..+.++...  +++++|+|++.+++ ++..
T Consensus       276 ~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll-~~~~  354 (456)
T KOG0266|consen  276 RTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLL-SASL  354 (456)
T ss_pred             cCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEE-EecC
Confidence            99999999999999999999999999999999999999999998774 36777777766  99999999988555 8888


Q ss_pred             CCcEEEEECCCCeeeEEEeccCc-------eeeecCCCEEEEEecCCeEEEEeccc-------------ceEEEEecCCC
Q 004603          662 NSEIRYWSINNGSCAGVFKVCNL-------MPIILKGCFILNSIFNCYLLLHRIFL-------------NLLSVSEWCNP  721 (743)
Q Consensus       662 Dg~IrvWDl~tg~~v~~~~~~~~-------i~~s~~g~~l~sgs~Dg~I~vh~~~v-------------~~l~v~~~~~~  721 (743)
                      |+.|++||++.+.++..+.+|..       ....+.+.++++|+.|+.|.+|+...             ...........
T Consensus       355 d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~  434 (456)
T KOG0266|consen  355 DRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTE  434 (456)
T ss_pred             CCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCc
Confidence            99999999999999999988744       12357899999999999999987651             12223333446


Q ss_pred             CEEEEEe--CCCeEEEeCCCcc
Q 004603          722 DEISTSS--WKDSCCSHRELYL  741 (743)
Q Consensus       722 ~~laSgs--~DG~V~iWd~~~~  741 (743)
                      .++++++  .|+.|++|...++
T Consensus       435 ~~~~s~s~~~d~~~~~w~~~~~  456 (456)
T KOG0266|consen  435 NLIASSSFEGDGLIRLWKYDFL  456 (456)
T ss_pred             CeeeecCcCCCceEEEecCCCC
Confidence            7888888  7999999988753

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=1.4e-24  Score=217.24  Aligned_cols=215  Identities=23%  Similarity=0.366  Sum_probs=179.7

Q ss_pred             CEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEe-eCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004603          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLI-PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE  585 (743)
Q Consensus       507 ~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~  585 (743)
                      .++++|+.|+.|++|....                +.++.....+ .+|+..|.+|+|+|.|++||+|+.|.++.||.-.
T Consensus        28 ~ilAscg~Dk~vriw~~~~----------------~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~   91 (312)
T KOG0645|consen   28 VILASCGTDKAVRIWSTSS----------------GDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKE   91 (312)
T ss_pred             eEEEeecCCceEEEEecCC----------------CCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecC
Confidence            5899999999999995532                2234444444 4799999999999999999999999999999754


Q ss_pred             --CCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCC--eeEEEEecCCCCeEEEEEecCCCcEEEEEeC
Q 004603          586 --SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD--YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN  661 (743)
Q Consensus       586 --t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~--~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~  661 (743)
                        ..+++.+++||...|.|++|+++|.+||||+.|+.|-||.+....  .|+..+.+|+..|..+.|||... +|++|+.
T Consensus        92 ~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~d-lL~S~SY  170 (312)
T KOG0645|consen   92 DGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTED-LLFSCSY  170 (312)
T ss_pred             CCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcc-eeEEecc
Confidence              467899999999999999999999999999999999999988433  46889999999999999999854 8899999


Q ss_pred             CCcEEEEECC---CCeeeEEEeccCc----eeeecCCCEEEEEecCCeEEEEec--cc-----ceEEEEecCCCCEEEEE
Q 004603          662 NSEIRYWSIN---NGSCAGVFKVCNL----MPIILKGCFILNSIFNCYLLLHRI--FL-----NLLSVSEWCNPDEISTS  727 (743)
Q Consensus       662 Dg~IrvWDl~---tg~~v~~~~~~~~----i~~s~~g~~l~sgs~Dg~I~vh~~--~v-----~~l~v~~~~~~~~laSg  727 (743)
                      |.+|++|+-.   ...|+.++.+|+.    +.|.+.|..|++++.|++++||..  .+     ..+...+++ .+.|+|+
T Consensus       171 DnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~~~~sr~~Y~v~W~-~~~IaS~  249 (312)
T KOG0645|consen  171 DNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDLSGMHSRALYDVPWD-NGVIASG  249 (312)
T ss_pred             CCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCcchhcccceEeeeec-ccceEec
Confidence            9999999776   3478899998863    668899999999999999999882  11     222222232 6799999


Q ss_pred             eCCCeEEEeCCC
Q 004603          728 SWKDSCCSHREL  739 (743)
Q Consensus       728 s~DG~V~iWd~~  739 (743)
                      +.|+.|++|.+.
T Consensus       250 ggD~~i~lf~~s  261 (312)
T KOG0645|consen  250 GGDDAIRLFKES  261 (312)
T ss_pred             cCCCEEEEEEec
Confidence            999999999754

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=3.9e-25  Score=217.14  Aligned_cols=224  Identities=17%  Similarity=0.199  Sum_probs=193.0

Q ss_pred             CCCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCC
Q 004603          478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK  557 (743)
Q Consensus       478 ~s~~~s~~~fs~dg~~~l~~~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~  557 (743)
                      +...+..+.|+.||               ++..+++.|.+|++|..                   .....++++.+|...
T Consensus        16 ~qgaV~avryN~dG---------------nY~ltcGsdrtvrLWNp-------------------~rg~liktYsghG~E   61 (307)
T KOG0316|consen   16 AQGAVRAVRYNVDG---------------NYCLTCGSDRTVRLWNP-------------------LRGALIKTYSGHGHE   61 (307)
T ss_pred             cccceEEEEEccCC---------------CEEEEcCCCceEEeecc-------------------cccceeeeecCCCce
Confidence            44577788888888               68899999999999944                   334688999999999


Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCC-eeEEEE
Q 004603          558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD-YSLRTF  636 (743)
Q Consensus       558 V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~-~~l~~l  636 (743)
                      |..++.+.|...|++|+.|+.|.+||+.+++.++.|.+|.+.|..|+|+.+...+++|+.|.+||+||.+... .++..+
T Consensus        62 VlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQil  141 (307)
T KOG0316|consen   62 VLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQIL  141 (307)
T ss_pred             eeeccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchh
Confidence            9999999999999999999999999999999999999999999999999999999999999999999998754 468888


Q ss_pred             ecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEecc--CceeeecCCCEEEEEecCCeEEEEecc-----
Q 004603          637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVC--NLMPIILKGCFILNSIFNCYLLLHRIF-----  709 (743)
Q Consensus       637 ~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~--~~i~~s~~g~~l~sgs~Dg~I~vh~~~-----  709 (743)
                      ......|.+|....   +.+++|+.||++|.||++.|.....+-++  +++.|++++++++.++.|+++++-+..     
T Consensus       142 dea~D~V~Si~v~~---heIvaGS~DGtvRtydiR~G~l~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL  218 (307)
T KOG0316|consen  142 DEAKDGVSSIDVAE---HEIVAGSVDGTVRTYDIRKGTLSSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLL  218 (307)
T ss_pred             hhhcCceeEEEecc---cEEEeeccCCcEEEEEeecceeehhhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHH
Confidence            88889999999874   46779999999999999999987777765  568899999999999999999994432     


Q ss_pred             ---------cceEEEEecCCCCEEEEEeCCCeEEEeCC
Q 004603          710 ---------LNLLSVSEWCNPDEISTSSWKDSCCSHRE  738 (743)
Q Consensus       710 ---------v~~l~v~~~~~~~~laSgs~DG~V~iWd~  738 (743)
                               ...+.-+.......+++|+.||.|++||-
T Consensus       219 ~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdL  256 (307)
T KOG0316|consen  219 KSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDL  256 (307)
T ss_pred             HHhcccccceeeeeeeecccceeEEeccCCceEEEEEe
Confidence                     22333344444679999999999999984

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.94  E-value=1.2e-26  Score=242.57  Aligned_cols=227  Identities=15%  Similarity=0.240  Sum_probs=193.2

Q ss_pred             ccccCCCCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEee
Q 004603          473 TLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP  552 (743)
Q Consensus       473 ~l~~~~s~~~s~~~fs~dg~~~l~~~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  552 (743)
                      .+...+...++.+.|++++               .++++|+.++.|+.|..                    .+..++.+.
T Consensus       132 tilQaHDs~Vr~m~ws~~g---------------~wmiSgD~gG~iKyWqp--------------------nmnnVk~~~  176 (464)
T KOG0284|consen  132 TILQAHDSPVRTMKWSHNG---------------TWMISGDKGGMIKYWQP--------------------NMNNVKIIQ  176 (464)
T ss_pred             HHhhhhcccceeEEEccCC---------------CEEEEcCCCceEEeccc--------------------chhhhHHhh
Confidence            3445567788888888877               69999999999999932                    233455556


Q ss_pred             CCC-CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe
Q 004603          553 AST-SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY  631 (743)
Q Consensus       553 ~H~-~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~  631 (743)
                      +|. ..|+|++|+|+...|++|++|++|+|||....+..+.+.+|...|.|++|||...+|++++.|..|++||.+++. 
T Consensus       177 ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~-  255 (464)
T KOG0284|consen  177 AHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGS-  255 (464)
T ss_pred             HhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcc-
Confidence            555 899999999998999999999999999999999989999999999999999999999999999999999999976 


Q ss_pred             eEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEeccCc----eeeec-CCCEEEEEecCCeEEEE
Q 004603          632 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNL----MPIIL-KGCFILNSIFNCYLLLH  706 (743)
Q Consensus       632 ~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~~~----i~~s~-~g~~l~sgs~Dg~I~vh  706 (743)
                      |+.++.+|...|..+.|.|++ .+|+++|.|..++++|+++.+.+.++++|..    +.++| ....+.+|+.||.|..|
T Consensus       256 cl~tlh~HKntVl~~~f~~n~-N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~  334 (464)
T KOG0284|consen  256 CLATLHGHKNTVLAVKFNPNG-NWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHW  334 (464)
T ss_pred             hhhhhhhccceEEEEEEcCCC-CeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEE
Confidence            499999999999999999998 5777999999999999999888889988743    55666 45678889999999986


Q ss_pred             ecc---------------cceEEEEecCCCCEEEEEeCCCeEEEeCC
Q 004603          707 RIF---------------LNLLSVSEWCNPDEISTSSWKDSCCSHRE  738 (743)
Q Consensus       707 ~~~---------------v~~l~v~~~~~~~~laSgs~DG~V~iWd~  738 (743)
                      ...               +..+++.+-  +..|++|+.|.++++|..
T Consensus       335 ~v~~~~p~~~i~~AHd~~iwsl~~hPl--Ghil~tgsnd~t~rfw~r  379 (464)
T KOG0284|consen  335 VVGLEEPLGEIPPAHDGEIWSLAYHPL--GHILATGSNDRTVRFWTR  379 (464)
T ss_pred             eccccccccCCCcccccceeeeecccc--ceeEeecCCCcceeeecc
Confidence            543               445555554  678999999999999953

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.94  E-value=1.2e-26  Score=237.90  Aligned_cols=205  Identities=17%  Similarity=0.280  Sum_probs=175.4

Q ss_pred             CEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004603          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES  586 (743)
Q Consensus       507 ~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t  586 (743)
                      ..+++|..|++|++|+.                   ........+.||++.|.|+.|  +.+.|++|+.|.+|+|||+.+
T Consensus       208 ~kiVSGlrDnTikiWD~-------------------n~~~c~~~L~GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~t  266 (499)
T KOG0281|consen  208 EKIVSGLRDNTIKIWDK-------------------NSLECLKILTGHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNT  266 (499)
T ss_pred             hhhhcccccCceEEecc-------------------ccHHHHHhhhcCCCcEEeeec--cceEEEecCCCceEEEEeccC
Confidence            56799999999999933                   334566778999999999999  567999999999999999999


Q ss_pred             CeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe--eEEEEecCCCCeEEEEEecCCCcEEEEEeCCCc
Q 004603          587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY--SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE  664 (743)
Q Consensus       587 ~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~--~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~  664 (743)
                      ++++.++.+|...|..++|+  ..+++|++.|.+|+|||+..+..  +.+.+.||...|+.+.|+..   ++++++.|.+
T Consensus       267 ge~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~k---yIVsASgDRT  341 (499)
T KOG0281|consen  267 GEPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK---YIVSASGDRT  341 (499)
T ss_pred             CchhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccc---eEEEecCCce
Confidence            99999999999999999997  46899999999999999987652  34578899999999999743   8889999999


Q ss_pred             EEEEECCCCeeeEEEeccCc--eeeecCCCEEEEEecCCeEEEEecccce------------EEEEecCCCCEEEEEeCC
Q 004603          665 IRYWSINNGSCAGVFKVCNL--MPIILKGCFILNSIFNCYLLLHRIFLNL------------LSVSEWCNPDEISTSSWK  730 (743)
Q Consensus       665 IrvWDl~tg~~v~~~~~~~~--i~~s~~g~~l~sgs~Dg~I~vh~~~v~~------------l~v~~~~~~~~laSgs~D  730 (743)
                      |++|++.++++++++.+|..  .+.-..++++++|+.|.+|++|+..-..            -++.++  ...|++|++|
T Consensus       342 ikvW~~st~efvRtl~gHkRGIAClQYr~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSGaYD  419 (499)
T KOG0281|consen  342 IKVWSTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGAYD  419 (499)
T ss_pred             EEEEeccceeeehhhhcccccceehhccCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec--Cceeeecccc
Confidence            99999999999999999843  4455789999999999999999875321            122233  6799999999


Q ss_pred             CeEEEeCCC
Q 004603          731 DSCCSHREL  739 (743)
Q Consensus       731 G~V~iWd~~  739 (743)
                      |+|++||-.
T Consensus       420 GkikvWdl~  428 (499)
T KOG0281|consen  420 GKIKVWDLQ  428 (499)
T ss_pred             ceEEEEecc
Confidence            999999854

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=99.93  E-value=1.7e-24  Score=230.12  Aligned_cols=224  Identities=17%  Similarity=0.321  Sum_probs=191.9

Q ss_pred             CCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeE
Q 004603          480 SSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVE  559 (743)
Q Consensus       480 ~~~s~~~fs~dg~~~l~~~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~  559 (743)
                      .+++++.|+.+|               .+|++|+.||.+++|....                    ..+.++.-|+++|.
T Consensus       236 kdVT~L~Wn~~G---------------~~LatG~~~G~~riw~~~G--------------------~l~~tl~~HkgPI~  280 (524)
T KOG0273|consen  236 KDVTSLDWNNDG---------------TLLATGSEDGEARIWNKDG--------------------NLISTLGQHKGPIF  280 (524)
T ss_pred             CCcceEEecCCC---------------CeEEEeecCcEEEEEecCc--------------------hhhhhhhccCCceE
Confidence            478889999988               5999999999999994422                    35667888999999


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCCe-----------------------------------------EEEEEcccCC
Q 004603          560 SCHFSPDGKLLATGGHDKKAVLWCTESFT-----------------------------------------VKSTLEEHTQ  598 (743)
Q Consensus       560 siafspdg~~LaSgs~Dg~V~IWd~~t~~-----------------------------------------~i~~l~~H~~  598 (743)
                      ++.|+.+|++|++++.|+++.|||..++.                                         ++.++.+|.+
T Consensus       281 slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g  360 (524)
T KOG0273|consen  281 SLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHG  360 (524)
T ss_pred             EEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccC
Confidence            99999999999999999999999985432                                         2334568999


Q ss_pred             CEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCC--------cEEEEEeCCCcEEEEEC
Q 004603          599 WITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE--------DLLCSCDNNSEIRYWSI  670 (743)
Q Consensus       599 ~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~--------~lL~Sgs~Dg~IrvWDl  670 (743)
                      .|.++.|+|.+.+|+||+.|++++||...... ++..+.+|+..|+.+.|+|+|+        ..+++++.|++|++||+
T Consensus       361 ~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~-~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv  439 (524)
T KOG0273|consen  361 EVNALKWNPTGSLLASCSDDGTLKIWSMGQSN-SVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDV  439 (524)
T ss_pred             ceEEEEECCCCceEEEecCCCeeEeeecCCCc-chhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEc
Confidence            99999999999999999999999999987754 5889999999999999999753        36789999999999999


Q ss_pred             CCCeeeEEEeccC----ceeeecCCCEEEEEecCCeEEEEeccc-----------ceEEEEecCCCCEEEEEeCCCeEEE
Q 004603          671 NNGSCAGVFKVCN----LMPIILKGCFILNSIFNCYLLLHRIFL-----------NLLSVSEWCNPDEISTSSWKDSCCS  735 (743)
Q Consensus       671 ~tg~~v~~~~~~~----~i~~s~~g~~l~sgs~Dg~I~vh~~~v-----------~~l~v~~~~~~~~laSgs~DG~V~i  735 (743)
                      ..+.++++|..|.    .+.|+|+|+|+++|+.|+.|.+|+...           ..+.+++.+++..|..+-.||.|++
T Consensus       440 ~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn~~G~kl~~~~sd~~vcv  519 (524)
T KOG0273|consen  440 ESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTGGIFELCWNAAGDKLGACASDGSVCV  519 (524)
T ss_pred             cCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCCeEEEEEEcCCCCEEEEEecCCCceE
Confidence            9999999997764    378999999999999999999986542           2355666666889999999999998


Q ss_pred             eCCC
Q 004603          736 HREL  739 (743)
Q Consensus       736 Wd~~  739 (743)
                      -|-+
T Consensus       520 ldlr  523 (524)
T KOG0273|consen  520 LDLR  523 (524)
T ss_pred             EEec
Confidence            8754

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=1.4e-24  Score=236.65  Aligned_cols=229  Identities=17%  Similarity=0.212  Sum_probs=199.3

Q ss_pred             CCCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCC
Q 004603          478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK  557 (743)
Q Consensus       478 ~s~~~s~~~fs~dg~~~l~~~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~  557 (743)
                      .+..+.++-+||..               .++.++-+.|.|.+|                   +..+..+++.+.-..-+
T Consensus        12 rSdRVKsVd~HPte---------------Pw~la~LynG~V~IW-------------------nyetqtmVksfeV~~~P   57 (794)
T KOG0276|consen   12 RSDRVKSVDFHPTE---------------PWILAALYNGDVQIW-------------------NYETQTMVKSFEVSEVP   57 (794)
T ss_pred             cCCceeeeecCCCC---------------ceEEEeeecCeeEEE-------------------ecccceeeeeeeecccc
Confidence            45566667777755               689999999999999                   44455788888888899


Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEe
Q 004603          558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT  637 (743)
Q Consensus       558 V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~  637 (743)
                      |.++.|-+..++|++|++|..|+||+..+++.+..|+.|.+.|.|++.||...+++|+++|-+|++||.+..-.|..+|.
T Consensus        58 vRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfe  137 (794)
T KOG0276|consen   58 VRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFE  137 (794)
T ss_pred             hhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999888899999


Q ss_pred             cCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEeccC----ceeeec--CCCEEEEEecCCeEEEEeccc-
Q 004603          638 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCN----LMPIIL--KGCFILNSIFNCYLLLHRIFL-  710 (743)
Q Consensus       638 ~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~~----~i~~s~--~g~~l~sgs~Dg~I~vh~~~v-  710 (743)
                      ||+..|++|+|+|.....|+||+.|++|+||.+....+..++.+|.    ++.+-+  |..||++|++|.+++||+... 
T Consensus       138 GH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk  217 (794)
T KOG0276|consen  138 GHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTK  217 (794)
T ss_pred             CcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchH
Confidence            9999999999999999999999999999999999999999999874    355554  446999999999999987532 


Q ss_pred             -----------ceEEEEecCCCCEEEEEeCCCeEEEeCCCc
Q 004603          711 -----------NLLSVSEWCNPDEISTSSWKDSCCSHRELY  740 (743)
Q Consensus       711 -----------~~l~v~~~~~~~~laSgs~DG~V~iWd~~~  740 (743)
                                 +.-.+++.+.-..|+|||.||+|+||....
T Consensus       218 ~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~T  258 (794)
T KOG0276|consen  218 SCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKT  258 (794)
T ss_pred             HHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcc
Confidence                       223334444456999999999999997653

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=4.6e-25  Score=218.85  Aligned_cols=214  Identities=16%  Similarity=0.274  Sum_probs=183.2

Q ss_pred             CCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEE
Q 004603          505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWC  583 (743)
Q Consensus       505 ~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafsp-dg~~LaSgs~Dg~V~IWd  583 (743)
                      +++.+.+++-||++++|+..                  ....++..+++|...|.+|.|++ +++.+++++.|++||+|+
T Consensus        72 ~e~~~~~a~GDGSLrl~d~~------------------~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~  133 (311)
T KOG0277|consen   72 HENQVIAASGDGSLRLFDLT------------------MPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWD  133 (311)
T ss_pred             CcceEEEEecCceEEEeccC------------------CCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeec
Confidence            46888999999999999532                  22357888999999999999998 667888999999999999


Q ss_pred             CCCCeEEEEEcccCCCEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCC
Q 004603          584 TESFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN  662 (743)
Q Consensus       584 ~~t~~~i~~l~~H~~~V~~vafsp-~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~D  662 (743)
                      ....+.+.+|.||..-|+...|+| ..++|++++.|+++++||++.... ...+..|...|.+++|+.-.+++|++|+.|
T Consensus       134 ~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk-~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd  212 (311)
T KOG0277|consen  134 PNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGK-FMSIEAHNSEILCCDWSKYNHNVLATGGVD  212 (311)
T ss_pred             CCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCc-eeEEEeccceeEeecccccCCcEEEecCCC
Confidence            999999999999999999999999 588999999999999999998776 444888999999999999989999999999


Q ss_pred             CcEEEEECCCC-eeeEEEeccC----ceeeecC-CCEEEEEecCCeEEEEecc---------------cceEEEEecCCC
Q 004603          663 SEIRYWSINNG-SCAGVFKVCN----LMPIILK-GCFILNSIFNCYLLLHRIF---------------LNLLSVSEWCNP  721 (743)
Q Consensus       663 g~IrvWDl~tg-~~v~~~~~~~----~i~~s~~-g~~l~sgs~Dg~I~vh~~~---------------v~~l~v~~~~~~  721 (743)
                      +.||+||+++- .++.++.+|.    .+.++|. ...|++++.|-++++|+..               +..+.|+.. .+
T Consensus       213 ~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~-~~  291 (311)
T KOG0277|consen  213 NLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLF-DP  291 (311)
T ss_pred             ceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccc-cC
Confidence            99999999975 4566676663    3667764 4568899999999997654               344556666 48


Q ss_pred             CEEEEEeCCCeEEEeCC
Q 004603          722 DEISTSSWKDSCCSHRE  738 (743)
Q Consensus       722 ~~laSgs~DG~V~iWd~  738 (743)
                      +.+|+++||+.++||+.
T Consensus       292 ~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  292 GQVASTGWDELLYVWNP  308 (311)
T ss_pred             ceeeecccccceeeecc
Confidence            99999999999999985

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=1.5e-24  Score=236.41  Aligned_cols=215  Identities=20%  Similarity=0.285  Sum_probs=185.8

Q ss_pred             cccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 004603          501 QLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAV  580 (743)
Q Consensus       501 ~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~  580 (743)
                      .+-...+++++|+.|..|++|                   ...+...++.|++|.+.|.||+.||.-.+++|+|+|-+|+
T Consensus        62 kfiaRknWiv~GsDD~~IrVf-------------------nynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iK  122 (794)
T KOG0276|consen   62 KFIARKNWIVTGSDDMQIRVF-------------------NYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIK  122 (794)
T ss_pred             eeeeccceEEEecCCceEEEE-------------------ecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEE
Confidence            355567999999999999999                   4445578999999999999999999999999999999999


Q ss_pred             EEECCC-CeEEEEEcccCCCEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCC-CcEEE
Q 004603          581 LWCTES-FTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK-EDLLC  657 (743)
Q Consensus       581 IWd~~t-~~~i~~l~~H~~~V~~vafsp-~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g-~~lL~  657 (743)
                      +||.+. ..+..+|+||+..|.+|+|+| |.+.|+|++-|++|+||.+..+. +..++.+|...|++|+|-+.| +.+|+
T Consensus       123 lW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~-~nfTl~gHekGVN~Vdyy~~gdkpylI  201 (794)
T KOG0276|consen  123 LWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPH-PNFTLEGHEKGVNCVDYYTGGDKPYLI  201 (794)
T ss_pred             EeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCC-CceeeeccccCcceEEeccCCCcceEE
Confidence            999986 578899999999999999999 67899999999999999999855 589999999999999998765 33777


Q ss_pred             EEeCCCcEEEEECCCCeeeEEEeccCc----eeeecCCCEEEEEecCCeEEEEeccc------------ceEEEEecCCC
Q 004603          658 SCDNNSEIRYWSINNGSCAGVFKVCNL----MPIILKGCFILNSIFNCYLLLHRIFL------------NLLSVSEWCNP  721 (743)
Q Consensus       658 Sgs~Dg~IrvWDl~tg~~v~~~~~~~~----i~~s~~g~~l~sgs~Dg~I~vh~~~v------------~~l~v~~~~~~  721 (743)
                      +|+.|.+|+|||..+..|+.++.+|+.    ++|+|.-..+++|++||++++|....            ++.++......
T Consensus       202 sgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~  281 (794)
T KOG0276|consen  202 SGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGD  281 (794)
T ss_pred             ecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCC
Confidence            999999999999999999999999854    77999999999999999999986543            23344433556


Q ss_pred             CEEEEEeCCCeEEE
Q 004603          722 DEISTSSWKDSCCS  735 (743)
Q Consensus       722 ~~laSgs~DG~V~i  735 (743)
                      +.++.|...|.|.+
T Consensus       282 ~~i~vG~Deg~i~v  295 (794)
T KOG0276|consen  282 GKIAVGFDEGSVTV  295 (794)
T ss_pred             CeEEEeccCCcEEE
Confidence            77888888877654

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=99.92  E-value=1.4e-23  Score=207.71  Aligned_cols=192  Identities=16%  Similarity=0.221  Sum_probs=158.9

Q ss_pred             eeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 004603          546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD  625 (743)
Q Consensus       546 ~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWD  625 (743)
                      .++.++.+|+.-|++|.|.-+|++++|||+||+|||||++...+-+.+. |..+|++|..+|+...|++|..+|.|++||
T Consensus        74 ~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWD  152 (311)
T KOG0315|consen   74 NPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWD  152 (311)
T ss_pred             CceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEE
Confidence            4889999999999999999999999999999999999999977766664 779999999999999999999999999999


Q ss_pred             CCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCe------eeEEEeccCc----eeeecCCCEEE
Q 004603          626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS------CAGVFKVCNL----MPIILKGCFIL  695 (743)
Q Consensus       626 l~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~------~v~~~~~~~~----i~~s~~g~~l~  695 (743)
                      +.+..+....+......|.++...|+|. +++++...|.++||++-+..      ++..|..|+.    +.++|+++||+
T Consensus       153 l~~~~c~~~liPe~~~~i~sl~v~~dgs-ml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~la  231 (311)
T KOG0315|consen  153 LGENSCTHELIPEDDTSIQSLTVMPDGS-MLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLA  231 (311)
T ss_pred             ccCCccccccCCCCCcceeeEEEcCCCc-EEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEE
Confidence            9986542333334457899999999997 56677778999999997653      4455665543    66899999999


Q ss_pred             EEecCCeEEEEecccc-e------------EEEEecCCCCEEEEEeCCCeEEEeCCC
Q 004603          696 NSIFNCYLLLHRIFLN-L------------LSVSEWCNPDEISTSSWKDSCCSHREL  739 (743)
Q Consensus       696 sgs~Dg~I~vh~~~v~-~------------l~v~~~~~~~~laSgs~DG~V~iWd~~  739 (743)
                      +++.|.+++||..... .            ....+..++.+|++++.|+.+++|+-.
T Consensus       232 t~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~  288 (311)
T KOG0315|consen  232 TCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLS  288 (311)
T ss_pred             eecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccc
Confidence            9999999999987654 1            112334558899999999999999854

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.92  E-value=7.1e-24  Score=214.85  Aligned_cols=227  Identities=18%  Similarity=0.263  Sum_probs=189.6

Q ss_pred             CCCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCC
Q 004603          478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK  557 (743)
Q Consensus       478 ~s~~~s~~~fs~dg~~~l~~~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~  557 (743)
                      +...+-.+.|+|++               .++++|+.|..|.+|....+                  .+-+..+++|++.
T Consensus        46 h~geI~~~~F~P~g---------------s~~aSgG~Dr~I~LWnv~gd------------------ceN~~~lkgHsgA   92 (338)
T KOG0265|consen   46 HKGEIYTIKFHPDG---------------SCFASGGSDRAIVLWNVYGD------------------CENFWVLKGHSGA   92 (338)
T ss_pred             CcceEEEEEECCCC---------------CeEeecCCcceEEEEecccc------------------ccceeeeccccce
Confidence            34456677899977               58999999999999954333                  1234566799999


Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCeeEEEE
Q 004603          558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDYSLRTF  636 (743)
Q Consensus       558 V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~-~~~LaSgs~Dg~VrvWDl~~~~~~l~~l  636 (743)
                      |..+.|.+|++.|++++.|++|+.||+++++.++.+++|...|..+.-+.- ..++.|++.|+++||||+|+.. +++++
T Consensus        93 VM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~-~~~t~  171 (338)
T KOG0265|consen   93 VMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKE-AIKTF  171 (338)
T ss_pred             eEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccc-hhhcc
Confidence            999999999999999999999999999999999999999999999873333 3467888999999999999844 47777


Q ss_pred             ecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEecc----CceeeecCCCEEEEEecCCeEEEEeccc--
Q 004603          637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVC----NLMPIILKGCFILNSIFNCYLLLHRIFL--  710 (743)
Q Consensus       637 ~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~----~~i~~s~~g~~l~sgs~Dg~I~vh~~~v--  710 (743)
                      . ..-.++++.|.-++..++ +|+-|+.|++||++.+.+..++++|    +.+..+++|.++.+-+.|+++++|+..-  
T Consensus       172 ~-~kyqltAv~f~d~s~qv~-sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~  249 (338)
T KOG0265|consen  172 E-NKYQLTAVGFKDTSDQVI-SGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFA  249 (338)
T ss_pred             c-cceeEEEEEeccccccee-eccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccC
Confidence            5 345799999998887666 8999999999999999999999998    4477889999999999999999987542  


Q ss_pred             ------------------ceEEEEecCCCCEEEEEeCCCeEEEeCCCc
Q 004603          711 ------------------NLLSVSEWCNPDEISTSSWKDSCCSHRELY  740 (743)
Q Consensus       711 ------------------~~l~v~~~~~~~~laSgs~DG~V~iWd~~~  740 (743)
                                        ..+..++.++...+.+|+.|..|++||..+
T Consensus       250 p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~  297 (338)
T KOG0265|consen  250 PSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTS  297 (338)
T ss_pred             CCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeeccc
Confidence                              334445555578999999999999999876

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.92  E-value=3.4e-23  Score=222.52  Aligned_cols=241  Identities=19%  Similarity=0.371  Sum_probs=197.1

Q ss_pred             CCCCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCC-----------------------------
Q 004603          477 NGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDA-----------------------------  527 (743)
Q Consensus       477 ~~s~~~s~~~fs~dg~~~l~~~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~-----------------------------  527 (743)
                      .++....+..|+|.|               .++++|...|+|++|+.....                             
T Consensus        57 EH~~~vtVAkySPsG---------------~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~av  121 (603)
T KOG0318|consen   57 EHAHQVTVAKYSPSG---------------FYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAV  121 (603)
T ss_pred             cccceeEEEEeCCCc---------------eEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEE
Confidence            345666666777765               699999999999999776632                             


Q ss_pred             -CCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEE
Q 004603          528 -DPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRF  605 (743)
Q Consensus       528 -~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~-~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vaf  605 (743)
                       +++.++++..-...+   ..+.++.+|+..|++|+|-|... +++||++|++|.+|.-.-.+...++..|+..|.|++|
T Consensus       122 GEGrerfg~~F~~DSG---~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRy  198 (603)
T KOG0318|consen  122 GEGRERFGHVFLWDSG---NSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRY  198 (603)
T ss_pred             ecCccceeEEEEecCC---CccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEE
Confidence             123333333222222   34677889999999999999766 6999999999999998888888999999999999999


Q ss_pred             cCCCCEEEEEeCCCeEEEEECCCCCeeEEEEe---cCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEecc
Q 004603          606 SPSLSRLATSSADRTVRVWDTENPDYSLRTFT---GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVC  682 (743)
Q Consensus       606 sp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~---~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~  682 (743)
                      +|||.+|+|++.||+|.+||=.+++. +..+.   +|.+.|.+|.|+||+..++ +++.|.++||||+.+.+++.++...
T Consensus       199 sPDG~~Fat~gsDgki~iyDGktge~-vg~l~~~~aHkGsIfalsWsPDs~~~~-T~SaDkt~KIWdVs~~slv~t~~~~  276 (603)
T KOG0318|consen  199 SPDGSRFATAGSDGKIYIYDGKTGEK-VGELEDSDAHKGSIFALSWSPDSTQFL-TVSADKTIKIWDVSTNSLVSTWPMG  276 (603)
T ss_pred             CCCCCeEEEecCCccEEEEcCCCccE-EEEecCCCCccccEEEEEECCCCceEE-EecCCceEEEEEeeccceEEEeecC
Confidence            99999999999999999999998775 77777   8999999999999988555 9999999999999999999998865


Q ss_pred             Cc-----eeeecCCCEEEEEecCCeEEE--------------EecccceEEEEecCCCCEEEEEeCCCeEEEeCCC
Q 004603          683 NL-----MPIILKGCFILNSIFNCYLLL--------------HRIFLNLLSVSEWCNPDEISTSSWKDSCCSHREL  739 (743)
Q Consensus       683 ~~-----i~~s~~g~~l~sgs~Dg~I~v--------------h~~~v~~l~v~~~~~~~~laSgs~DG~V~iWd~~  739 (743)
                      ..     +.+.-....|++-+.+|+|.+              |...++++.+..+  +.+|++|++||.|..|+-.
T Consensus       277 ~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d--~~~i~SgsyDG~I~~W~~~  350 (603)
T KOG0318|consen  277 STVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPD--GKTIYSGSYDGHINSWDSG  350 (603)
T ss_pred             CchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCC--CCEEEeeccCceEEEEecC
Confidence            43     223334667888888888877              7777888888776  6899999999999999854

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.92  E-value=3.9e-24  Score=237.42  Aligned_cols=229  Identities=25%  Similarity=0.331  Sum_probs=177.5

Q ss_pred             ccccCCCCCceEEEEecCCCccc-------cccCcc------ccCCCCEEEEeeCCCcEEEEecCCCCCCCCcccccccc
Q 004603          473 TLQHNGASSKSLLMFGSDGMGSL-------TSAPNQ------LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEV  539 (743)
Q Consensus       473 ~l~~~~s~~~s~~~fs~dg~~~l-------~~~~~~------l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~  539 (743)
                      .+..+++.+++++.|-.+...+.       ....+.      -.....|++++|.|.++++|.........         
T Consensus       378 ~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~---------  448 (775)
T KOG0319|consen  378 DLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETA---------  448 (775)
T ss_pred             cEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCccccc---------
Confidence            36677899999999966332110       001111      12235899999999999999666521111         


Q ss_pred             CCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCC
Q 004603          540 GKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR  619 (743)
Q Consensus       540 ~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg  619 (743)
                       ....+..-.+...|...|+|++++|+.++|||||.|++++||+++......++.||+..|+||.|+|....++|+|.|+
T Consensus       449 -~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~  527 (775)
T KOG0319|consen  449 -FPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDK  527 (775)
T ss_pred             -ccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCc
Confidence             1112222234568999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEeccCceeeecCCCEEEEEec
Q 004603          620 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNLMPIILKGCFILNSIF  699 (743)
Q Consensus       620 ~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~~~i~~s~~g~~l~sgs~  699 (743)
                      +|+||.+.+.. |+.+|.||+..|..+.|-.+|. .|+||+.||.|++|++.+++|+.++..|+.               
T Consensus       528 TvKIW~is~fS-ClkT~eGH~~aVlra~F~~~~~-qliS~~adGliKlWnikt~eC~~tlD~H~D---------------  590 (775)
T KOG0319|consen  528 TVKIWSISTFS-CLKTFEGHTSAVLRASFIRNGK-QLISAGADGLIKLWNIKTNECEMTLDAHND---------------  590 (775)
T ss_pred             eEEEEEeccce-eeeeecCccceeEeeeeeeCCc-EEEeccCCCcEEEEeccchhhhhhhhhccc---------------
Confidence            99999999866 5999999999999999999987 555999999999999999999999998853               


Q ss_pred             CCeEEEEecccceEEEEecCCCCEEEEEeCCCeEEEeCCC
Q 004603          700 NCYLLLHRIFLNLLSVSEWCNPDEISTSSWKDSCCSHREL  739 (743)
Q Consensus       700 Dg~I~vh~~~v~~l~v~~~~~~~~laSgs~DG~V~iWd~~  739 (743)
                               .+-.++...  ....++||+.||.|.+|.+.
T Consensus       591 ---------rvWaL~~~~--~~~~~~tgg~Dg~i~~wkD~  619 (775)
T KOG0319|consen  591 ---------RVWALSVSP--LLDMFVTGGGDGRIIFWKDV  619 (775)
T ss_pred             ---------eeEEEeecC--ccceeEecCCCeEEEEeecC
Confidence                     111222222  24467777777777777654

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=1.2e-23  Score=217.80  Aligned_cols=192  Identities=19%  Similarity=0.278  Sum_probs=171.3

Q ss_pred             eeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEE
Q 004603          545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW  624 (743)
Q Consensus       545 ~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvW  624 (743)
                      +..++.+.+|...|.++.|-|.|.+|++++.|.+|+.|+++++.++.+|.+|...|..++.+-||.++++|+.|-+|++|
T Consensus       183 ~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW  262 (406)
T KOG0295|consen  183 FRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVW  262 (406)
T ss_pred             HHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEE
Confidence            45667788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ECCCCCeeEEEEecCCCCeEEEEEecC--------------CCcEEEEEeCCCcEEEEECCCCeeeEEEeccC----cee
Q 004603          625 DTENPDYSLRTFTGHSTTVMSLDFHPS--------------KEDLLCSCDNNSEIRYWSINNGSCAGVFKVCN----LMP  686 (743)
Q Consensus       625 Dl~~~~~~l~~l~~h~~~V~sl~fsp~--------------g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~~----~i~  686 (743)
                      -+.++. |...+..|+.+|-+++|.|.              +..++++++.|++||+||+.++.|+.++.+|.    .+.
T Consensus       263 ~~~t~~-~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~a  341 (406)
T KOG0295|consen  263 VVATKQ-CKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVA  341 (406)
T ss_pred             Eeccch-hhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeE
Confidence            999854 47889999999999999883              23588899999999999999999999999984    478


Q ss_pred             eecCCCEEEEEecCCeEEEEeccc--------------ceEEEEecCCCCEEEEEeCCCeEEEeCCC
Q 004603          687 IILKGCFILNSIFNCYLLLHRIFL--------------NLLSVSEWCNPDEISTSSWKDSCCSHREL  739 (743)
Q Consensus       687 ~s~~g~~l~sgs~Dg~I~vh~~~v--------------~~l~v~~~~~~~~laSgs~DG~V~iWd~~  739 (743)
                      |+|.|+||++..+|+++++|+...              ..+++...  ..+++||+-|-++++|-++
T Consensus       342 f~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~--~p~VvTGsVdqt~KvwEcr  406 (406)
T KOG0295|consen  342 FSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKT--APYVVTGSVDQTVKVWECR  406 (406)
T ss_pred             EcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCC--CceEEeccccceeeeeecC
Confidence            999999999999999999987542              34444444  4599999999999999753

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.92  E-value=2.4e-25  Score=226.34  Aligned_cols=230  Identities=21%  Similarity=0.300  Sum_probs=181.8

Q ss_pred             CCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeE
Q 004603          480 SSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVE  559 (743)
Q Consensus       480 ~~~s~~~fs~dg~~~l~~~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~  559 (743)
                      .-..|..|+||+               .++++||.||-|.+|+...+.-.           +......-..+.-|.++|.
T Consensus       214 Sh~EcA~FSPDg---------------qyLvsgSvDGFiEVWny~~GKlr-----------KDLkYQAqd~fMMmd~aVl  267 (508)
T KOG0275|consen  214 SHVECARFSPDG---------------QYLVSGSVDGFIEVWNYTTGKLR-----------KDLKYQAQDNFMMMDDAVL  267 (508)
T ss_pred             cchhheeeCCCC---------------ceEeeccccceeeeehhccchhh-----------hhhhhhhhcceeecccceE
Confidence            355677899988               69999999999999987766321           1222222334556788999


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEc-ccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEec
Q 004603          560 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG  638 (743)
Q Consensus       560 siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~-~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~  638 (743)
                      |+.|+.|...+|+|+.||+|+||.+++|.|++.|. .|+..|+|+.|+.|+..+++++.|.+||+.-+..+++ +..|.|
T Consensus       268 ci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~-LKEfrG  346 (508)
T KOG0275|consen  268 CISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKC-LKEFRG  346 (508)
T ss_pred             EEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchh-HHHhcC
Confidence            99999999999999999999999999999999997 8999999999999999999999999999999998775 999999


Q ss_pred             CCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEecc------------------------------------
Q 004603          639 HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVC------------------------------------  682 (743)
Q Consensus       639 h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~------------------------------------  682 (743)
                      |++.|+...|.++|.+++ +++.||+|+||+..+.+|+.+|+..                                    
T Consensus       347 HsSyvn~a~ft~dG~~ii-saSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQ  425 (508)
T KOG0275|consen  347 HSSYVNEATFTDDGHHII-SASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQ  425 (508)
T ss_pred             ccccccceEEcCCCCeEE-EecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccce
Confidence            999999999999998665 8999999999999999887776521                                    


Q ss_pred             ---------------CceeeecCCCEEEEEecCCeEEEEecccc------------eEEEEecCCCCEEEEEeCCCeEEE
Q 004603          683 ---------------NLMPIILKGCFILNSIFNCYLLLHRIFLN------------LLSVSEWCNPDEISTSSWKDSCCS  735 (743)
Q Consensus       683 ---------------~~i~~s~~g~~l~sgs~Dg~I~vh~~~v~------------~l~v~~~~~~~~laSgs~DG~V~i  735 (743)
                                     -..+++|.|.|+++.++|+.+........            .+.+.-.+....+++-+.||.+++
T Consensus       426 vVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKL  505 (508)
T KOG0275|consen  426 VVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKL  505 (508)
T ss_pred             EEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhh
Confidence                           01345577777777777777666332211            111122222567888888888888


Q ss_pred             eC
Q 004603          736 HR  737 (743)
Q Consensus       736 Wd  737 (743)
                      |+
T Consensus       506 Wk  507 (508)
T KOG0275|consen  506 WK  507 (508)
T ss_pred             cC
Confidence            86

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=7.2e-24  Score=237.94  Aligned_cols=213  Identities=21%  Similarity=0.282  Sum_probs=180.9

Q ss_pred             CCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004603          505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT  584 (743)
Q Consensus       505 ~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~  584 (743)
                      ...++.++-+.|.|.+|+..                   -.+.+..|.+|.++|..|+|+|+..+|++|++|.+|+||+.
T Consensus        20 ~rPwILtslHsG~IQlWDYR-------------------M~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnY   80 (1202)
T KOG0292|consen   20 KRPWILTSLHSGVIQLWDYR-------------------MGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNY   80 (1202)
T ss_pred             CCCEEEEeecCceeeeehhh-------------------hhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEec
Confidence            34799999999999999432                   23566778899999999999999999999999999999999


Q ss_pred             CCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCc
Q 004603          585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE  664 (743)
Q Consensus       585 ~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~  664 (743)
                      .+.+++.++.||-+.|..+.||+.-.+|+|+|+|-+||||+..+.. |+.++.||...|+|..|||..+ +++|+|.|-+
T Consensus        81 k~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~-~iavltGHnHYVMcAqFhptED-lIVSaSLDQT  158 (1202)
T KOG0292|consen   81 KTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRK-CIAVLTGHNHYVMCAQFHPTED-LIVSASLDQT  158 (1202)
T ss_pred             ccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCc-eEEEEecCceEEEeeccCCccc-eEEEecccce
Confidence            9999999999999999999999999999999999999999999855 5999999999999999999754 8889999999


Q ss_pred             EEEEECCCCe-----------------------------eeEEEecc----CceeeecCCCEEEEEecCCeEEEEeccc-
Q 004603          665 IRYWSINNGS-----------------------------CAGVFKVC----NLMPIILKGCFILNSIFNCYLLLHRIFL-  710 (743)
Q Consensus       665 IrvWDl~tg~-----------------------------~v~~~~~~----~~i~~s~~g~~l~sgs~Dg~I~vh~~~v-  710 (743)
                      |||||+..-+                             ..+.+.+|    +.++|+|.-..|++|++|+.|++|.... 
T Consensus       159 VRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnet  238 (1202)
T KOG0292|consen  159 VRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNET  238 (1202)
T ss_pred             EEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccc
Confidence            9999985211                             11233444    3478999999999999999999986543 


Q ss_pred             -------------ceEEEEecCCCCEEEEEeCCCeEEEeCC
Q 004603          711 -------------NLLSVSEWCNPDEISTSSWKDSCCSHRE  738 (743)
Q Consensus       711 -------------~~l~v~~~~~~~~laSgs~DG~V~iWd~  738 (743)
                                   .+-++-+.+...+|+|.|.|++|+|||-
T Consensus       239 KaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm  279 (1202)
T KOG0292|consen  239 KAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDM  279 (1202)
T ss_pred             cceeehhhhcccCCcceEEecCccceeEecCCCccEEEEec
Confidence                         2233333433579999999999999984

>PTZ00421 coronin; Provisional

Probab=99.91  E-value=1.4e-22  Score=230.19  Aligned_cols=189  Identities=19%  Similarity=0.231  Sum_probs=156.0

Q ss_pred             EEeeCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCC-------eEEEEEcccCCCEEEEEEcCCC-CEEEEEeCCC
Q 004603          549 QLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESF-------TVKSTLEEHTQWITDVRFSPSL-SRLATSSADR  619 (743)
Q Consensus       549 ~~l~~H~~~V~siafsp-dg~~LaSgs~Dg~V~IWd~~t~-------~~i~~l~~H~~~V~~vafsp~~-~~LaSgs~Dg  619 (743)
                      ..+.+|++.|++++|+| ++++|++|+.|++|+|||+.+.       +++..+.+|...|.+|+|+|++ .+|++++.|+
T Consensus        69 ~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dg  148 (493)
T PTZ00421         69 PILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADM  148 (493)
T ss_pred             ceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCC
Confidence            45789999999999999 8899999999999999999764       3567889999999999999974 6999999999


Q ss_pred             eEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEeccCc-----eeeecCCCEE
Q 004603          620 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNL-----MPIILKGCFI  694 (743)
Q Consensus       620 ~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~~~-----i~~s~~g~~l  694 (743)
                      +|+|||++++. ++..+.+|...|.+++|+|++. +|++++.|++|+|||+++++.+..+.+|..     +.+.+++..+
T Consensus       149 tVrIWDl~tg~-~~~~l~~h~~~V~sla~spdG~-lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~i  226 (493)
T PTZ00421        149 VVNVWDVERGK-AVEVIKCHSDQITSLEWNLDGS-LLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLI  226 (493)
T ss_pred             EEEEEECCCCe-EEEEEcCCCCceEEEEEECCCC-EEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeE
Confidence            99999999865 4788889999999999999986 777999999999999999999888887643     4567777777


Q ss_pred             EEEe----cCCeEEEEecccc--------------eEEEEecCCCCEEEEEe-CCCeEEEeCCC
Q 004603          695 LNSI----FNCYLLLHRIFLN--------------LLSVSEWCNPDEISTSS-WKDSCCSHREL  739 (743)
Q Consensus       695 ~sgs----~Dg~I~vh~~~v~--------------~l~v~~~~~~~~laSgs-~DG~V~iWd~~  739 (743)
                      ++++    .|+.|++|+....              .+....+.++..+++++ .||.|++||-.
T Consensus       227 vt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~  290 (493)
T PTZ00421        227 ITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELM  290 (493)
T ss_pred             EEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEee
Confidence            7654    4789999986521              11112233466788777 59999999643

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.91  E-value=4.2e-24  Score=227.91  Aligned_cols=214  Identities=15%  Similarity=0.212  Sum_probs=186.8

Q ss_pred             CCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004603          505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT  584 (743)
Q Consensus       505 ~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~  584 (743)
                      ...++.+++.|+.|++|...++                  ...++++.+|..+|.+++|+.+|..|+|++.|+.|++||+
T Consensus       226 ~~hLlLS~gmD~~vklW~vy~~------------------~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDt  287 (503)
T KOG0282|consen  226 KGHLLLSGGMDGLVKLWNVYDD------------------RRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDT  287 (503)
T ss_pred             eeeEEEecCCCceEEEEEEecC------------------cceehhhhcchhhhhhhhccccCCeeeeeecceeeeeecc
Confidence            3489999999999999966443                  2578899999999999999999999999999999999999


Q ss_pred             CCCeEEEEEcccCCCEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCC
Q 004603          585 ESFTVKSTLEEHTQWITDVRFSPSL-SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS  663 (743)
Q Consensus       585 ~t~~~i~~l~~H~~~V~~vafsp~~-~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg  663 (743)
                      ++|+++..|.. ...++|+.|+|++ +.|++|+.|+.|+.||+|+++. +..+..|-+.|..+.|-++|..+ ++.++|+
T Consensus       288 ETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kv-vqeYd~hLg~i~~i~F~~~g~rF-issSDdk  364 (503)
T KOG0282|consen  288 ETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKV-VQEYDRHLGAILDITFVDEGRRF-ISSSDDK  364 (503)
T ss_pred             ccceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHH-HHHHHhhhhheeeeEEccCCceE-eeeccCc
Confidence            99999998864 4568999999987 8899999999999999999875 88899999999999999998855 5888999


Q ss_pred             cEEEEECCCCeeeEEEec-----cCceeeecCCCEEEEEecCCeEEE-----------------EecccceEEEEecCCC
Q 004603          664 EIRYWSINNGSCAGVFKV-----CNLMPIILKGCFILNSIFNCYLLL-----------------HRIFLNLLSVSEWCNP  721 (743)
Q Consensus       664 ~IrvWDl~tg~~v~~~~~-----~~~i~~s~~g~~l~sgs~Dg~I~v-----------------h~~~v~~l~v~~~~~~  721 (743)
                      .|+||+.+.+..+.-+..     ..++..+|.+.++++-+.|+.|.+                 |......+.+.+.+++
T Consensus       365 s~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG  444 (503)
T KOG0282|consen  365 SVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDG  444 (503)
T ss_pred             cEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCC
Confidence            999999998766544332     245778899999999999998888                 6667778888888889


Q ss_pred             CEEEEEeCCCeEEEeCCC
Q 004603          722 DEISTSSWKDSCCSHREL  739 (743)
Q Consensus       722 ~~laSgs~DG~V~iWd~~  739 (743)
                      ++|++|+.||.|.+||-+
T Consensus       445 ~~l~SGdsdG~v~~wdwk  462 (503)
T KOG0282|consen  445 RTLCSGDSDGKVNFWDWK  462 (503)
T ss_pred             CeEEeecCCccEEEeech
Confidence            999999999999999864

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.91  E-value=3e-22  Score=242.35  Aligned_cols=243  Identities=19%  Similarity=0.228  Sum_probs=191.0

Q ss_pred             ccccCCCCCceEEEEecCCC----cc-------cccc----Ccccc-CCCCEEEEeeCCCcEEEEecCCCCCCCCccccc
Q 004603          473 TLQHNGASSKSLLMFGSDGM----GS-------LTSA----PNQLT-DMDRFVDDGSLDDNVESFLSPDDADPRDRVGRS  536 (743)
Q Consensus       473 ~l~~~~s~~~s~~~fs~dg~----~~-------l~~~----~~~l~-~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~  536 (743)
                      .+...++.+..+.+|.....    ..       +...    ..... ....++++++.|++|++|+...+          
T Consensus       496 ~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~----------  565 (793)
T PLN00181        496 EFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARS----------  565 (793)
T ss_pred             CEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCC----------
Confidence            34456777888888875421    00       0000    00011 23578999999999999955332          


Q ss_pred             cccCCCceeeeEEEeeCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcC-CCCEEEE
Q 004603          537 AEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP-SLSRLAT  614 (743)
Q Consensus       537 ~~~~~~~~~~~~~~l~~H~~~V~siafsp-dg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp-~~~~LaS  614 (743)
                               ..+..+.+|.+.|++|+|+| ++.+|++|+.|++|+|||++++..+..+..| ..|.++.|++ ++.+|++
T Consensus       566 ---------~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~lat  635 (793)
T PLN00181        566 ---------QLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAF  635 (793)
T ss_pred             ---------eEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEE
Confidence                     45677889999999999997 7899999999999999999999888888755 6799999954 6899999


Q ss_pred             EeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCC------eeeEEEeccCc----
Q 004603          615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG------SCAGVFKVCNL----  684 (743)
Q Consensus       615 gs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg------~~v~~~~~~~~----  684 (743)
                      |+.|++|++||+++...++..+.+|...|.++.|. ++. +|++++.|++|+|||++.+      .++..+.+|..    
T Consensus       636 gs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~-~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~  713 (793)
T PLN00181        636 GSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSS-TLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNF  713 (793)
T ss_pred             EeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCC-EEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeE
Confidence            99999999999998765677888999999999997 444 6779999999999999853      56778877643    


Q ss_pred             eeeecCCCEEEEEecCCeEEEEeccc-------------------------ceEEEEecCCCCEEEEEeCCCeEEEeC
Q 004603          685 MPIILKGCFILNSIFNCYLLLHRIFL-------------------------NLLSVSEWCNPDEISTSSWKDSCCSHR  737 (743)
Q Consensus       685 i~~s~~g~~l~sgs~Dg~I~vh~~~v-------------------------~~l~v~~~~~~~~laSgs~DG~V~iWd  737 (743)
                      +.+++++.+|++|+.|+.|.+|+...                         .+..+++..++..|++|+.||.|++|+
T Consensus       714 v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~  791 (793)
T PLN00181        714 VGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILE  791 (793)
T ss_pred             EEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEe
Confidence            67889999999999999999997421                         123344445577999999999999997

>PTZ00420 coronin; Provisional

Probab=99.91  E-value=2.9e-22  Score=229.23  Aligned_cols=190  Identities=17%  Similarity=0.180  Sum_probs=153.2

Q ss_pred             eeEEEeeCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCC--------eEEEEEcccCCCEEEEEEcCCCCE-EEEE
Q 004603          546 TEFQLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTESF--------TVKSTLEEHTQWITDVRFSPSLSR-LATS  615 (743)
Q Consensus       546 ~~~~~l~~H~~~V~siafspd-g~~LaSgs~Dg~V~IWd~~t~--------~~i~~l~~H~~~V~~vafsp~~~~-LaSg  615 (743)
                      ..+..+.+|.+.|.+|+|+|+ +.+||+|+.|++|+|||+.++        .++..+.+|...|.+|+|+|++.. |+++
T Consensus        65 ~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSg  144 (568)
T PTZ00420         65 PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSS  144 (568)
T ss_pred             ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEE
Confidence            467788999999999999996 789999999999999999753        234578899999999999998765 5799


Q ss_pred             eCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEeccCc----ee-----
Q 004603          616 SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNL----MP-----  686 (743)
Q Consensus       616 s~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~~~----i~-----  686 (743)
                      +.|++|+|||++++.. +..+. |...|.+++|+|+|. +|++++.|+.|+|||+++++++.++.+|..    ..     
T Consensus       145 S~DgtIrIWDl~tg~~-~~~i~-~~~~V~SlswspdG~-lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~  221 (568)
T PTZ00420        145 GFDSFVNIWDIENEKR-AFQIN-MPKKLSSLKWNIKGN-LLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDG  221 (568)
T ss_pred             eCCCeEEEEECCCCcE-EEEEe-cCCcEEEEEECCCCC-EEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeee
Confidence            9999999999998764 55554 567899999999987 667888899999999999999999988753    11     


Q ss_pred             eecCCCEEEEEecCC----eEEEEeccc--ceEE------------EEecC-CCCEEEEEeCCCeEEEeCC
Q 004603          687 IILKGCFILNSIFNC----YLLLHRIFL--NLLS------------VSEWC-NPDEISTSSWKDSCCSHRE  738 (743)
Q Consensus       687 ~s~~g~~l~sgs~Dg----~I~vh~~~v--~~l~------------v~~~~-~~~~laSgs~DG~V~iWd~  738 (743)
                      +++++.+|++++.|+    .|++|+...  ..+.            ...+. .+.++++|+.|++|++|+-
T Consensus       222 fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~  292 (568)
T PTZ00420        222 LGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQH  292 (568)
T ss_pred             EcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEc
Confidence            337888999988774    799998762  1111            11111 2567889999999999974

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.91  E-value=5.4e-24  Score=218.42  Aligned_cols=239  Identities=20%  Similarity=0.302  Sum_probs=194.9

Q ss_pred             ccccccCCCCCceEEEEecCCCc------cccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCce
Q 004603          471 RPTLQHNGASSKSLLMFGSDGMG------SLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFT  544 (743)
Q Consensus       471 ~~~l~~~~s~~~s~~~fs~dg~~------~l~~~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~  544 (743)
                      ......+|.++.++.+|......      ....+.-++.-.++++++||.|.+|++|+...+                  
T Consensus       206 DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~rviisGSSDsTvrvWDv~tg------------------  267 (499)
T KOG0281|consen  206 DDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDERVIVSGSSDSTVRVWDVNTG------------------  267 (499)
T ss_pred             cchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccceEEEecCCCceEEEEeccCC------------------
Confidence            34556778889999999876542      122333334444689999999999999977665                  


Q ss_pred             eeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe---EEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeE
Q 004603          545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT---VKSTLEEHTQWITDVRFSPSLSRLATSSADRTV  621 (743)
Q Consensus       545 ~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~---~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~V  621 (743)
                       .++.++-+|...|..+.|+  ..+++|++.|.+|.|||+.+..   +.+++.||.+.|..|.|+  .+++++++.|.+|
T Consensus       268 -e~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTi  342 (499)
T KOG0281|consen  268 -EPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTI  342 (499)
T ss_pred             -chhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceE
Confidence             5677888999999999996  5689999999999999998643   345678999999999996  5699999999999


Q ss_pred             EEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEeccCce--eeecCCCEEEEEec
Q 004603          622 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNLM--PIILKGCFILNSIF  699 (743)
Q Consensus       622 rvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~~~i--~~s~~g~~l~sgs~  699 (743)
                      ++|++.+.. +++++.+|...|.|+.+.   ..++++|+.|.+||+||+..|.|++.+.+|..+  ++--+...+++|..
T Consensus       343 kvW~~st~e-fvRtl~gHkRGIAClQYr---~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd~krIVSGaY  418 (499)
T KOG0281|consen  343 KVWSTSTCE-FVRTLNGHKRGIACLQYR---DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAY  418 (499)
T ss_pred             EEEecccee-eehhhhcccccceehhcc---CeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeecCceeeeccc
Confidence            999999865 599999999999999885   348899999999999999999999999999653  35567889999999


Q ss_pred             CCeEEEEeccc---------------------ceEEEEecCCCCEEEEEeCCCeEEEeCC
Q 004603          700 NCYLLLHRIFL---------------------NLLSVSEWCNPDEISTSSWKDSCCSHRE  738 (743)
Q Consensus       700 Dg~I~vh~~~v---------------------~~l~v~~~~~~~~laSgs~DG~V~iWd~  738 (743)
                      ||+|++|+...                     .++.+-++  .-.|++++.|.+|.|||=
T Consensus       419 DGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD--~fqIvsssHddtILiWdF  476 (499)
T KOG0281|consen  419 DGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD--EFQIISSSHDDTILIWDF  476 (499)
T ss_pred             cceEEEEecccccCCcccccchHHHhhhhccceeEEEeec--ceEEEeccCCCeEEEEEc
Confidence            99999987431                     23333333  568999999999999974

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.91  E-value=2.6e-22  Score=222.98  Aligned_cols=212  Identities=25%  Similarity=0.374  Sum_probs=181.4

Q ss_pred             CEEEEeeCC-CcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004603          507 RFVDDGSLD-DNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE  585 (743)
Q Consensus       507 ~~l~sGs~D-~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~  585 (743)
                      .+|+-|+.- +.+.+|.....                   ..+-...+|...|+|++++|||.+||||++||+|+|||..
T Consensus       320 DWiA~g~~klgQLlVweWqsE-------------------sYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~  380 (893)
T KOG0291|consen  320 DWIAFGCSKLGQLLVWEWQSE-------------------SYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQ  380 (893)
T ss_pred             CEEEEcCCccceEEEEEeecc-------------------ceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEecc
Confidence            678777653 67777744322                   3556678999999999999999999999999999999999


Q ss_pred             CCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCC-CCeEEEEEecCCCcEEEEEeCCC-
Q 004603          586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS-TTVMSLDFHPSKEDLLCSCDNNS-  663 (743)
Q Consensus       586 t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~-~~V~sl~fsp~g~~lL~Sgs~Dg-  663 (743)
                      ++-|+.+|.+|+..|+.+.|+..++.+++++-||+||.||+...+. .++|.... ....||+..|.|. ++++|+.|. 
T Consensus       381 SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrN-fRTft~P~p~QfscvavD~sGe-lV~AG~~d~F  458 (893)
T KOG0291|consen  381 SGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRN-FRTFTSPEPIQFSCVAVDPSGE-LVCAGAQDSF  458 (893)
T ss_pred             CceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccce-eeeecCCCceeeeEEEEcCCCC-EEEeeccceE
Confidence            9999999999999999999999999999999999999999998654 78887543 3357888889887 677777775 


Q ss_pred             cEEEEECCCCeeeEEEeccCc----eeeecCCCEEEEEecCCeEEEEeccc------------ceEEEEecCCCCEEEEE
Q 004603          664 EIRYWSINNGSCAGVFKVCNL----MPIILKGCFILNSIFNCYLLLHRIFL------------NLLSVSEWCNPDEISTS  727 (743)
Q Consensus       664 ~IrvWDl~tg~~v~~~~~~~~----i~~s~~g~~l~sgs~Dg~I~vh~~~v------------~~l~v~~~~~~~~laSg  727 (743)
                      .|.||++.+|+.+..+.+|..    ++|++.+..|++++.|.+|++|+...            .++.+.+.+++..|+++
T Consensus       459 ~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVa  538 (893)
T KOG0291|consen  459 EIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVA  538 (893)
T ss_pred             EEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEE
Confidence            699999999999999999854    56899999999999999999998643            35667777778999999


Q ss_pred             eCCCeEEEeCCC
Q 004603          728 SWKDSCCSHREL  739 (743)
Q Consensus       728 s~DG~V~iWd~~  739 (743)
                      .-||.|.+||..
T Consensus       539 TldgqItf~d~~  550 (893)
T KOG0291|consen  539 TLDGQITFFDIK  550 (893)
T ss_pred             EecceEEEEEhh
Confidence            999999999864

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.91  E-value=7.5e-23  Score=211.06  Aligned_cols=245  Identities=18%  Similarity=0.218  Sum_probs=200.4

Q ss_pred             cccCCCCCceEEEEecCCCcc---ccc-----cCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCcee
Q 004603          474 LQHNGASSKSLLMFGSDGMGS---LTS-----APNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTF  545 (743)
Q Consensus       474 l~~~~s~~~s~~~fs~dg~~~---l~~-----~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~  545 (743)
                      ....|+.+..+.+|+......   +..     ....+.....|+.+++.|+.|++|+....                   
T Consensus       165 wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~n-------------------  225 (460)
T KOG0285|consen  165 WFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYN-------------------  225 (460)
T ss_pred             eEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhh-------------------
Confidence            345577888888888765421   111     11124455689999999999999955333                   


Q ss_pred             eeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 004603          546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD  625 (743)
Q Consensus       546 ~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWD  625 (743)
                      +.++.+.||-+.|+|++.+|.-+.|+||+.|.+++|||+++...+.++.||+..|..|.+.|....++||+.|++|++||
T Consensus       226 kvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWD  305 (460)
T KOG0285|consen  226 KVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWD  305 (460)
T ss_pred             hhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEee
Confidence            56778889999999999999999999999999999999999999999999999999999999888999999999999999


Q ss_pred             CCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEeccCceeee---cCCCEEEEEecCCe
Q 004603          626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNLMPII---LKGCFILNSIFNCY  702 (743)
Q Consensus       626 l~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~~~i~~s---~~g~~l~sgs~Dg~  702 (743)
                      ++.++. ..++..|...|.+++.+|.. ++|++++.| .|+-|++..|+.+..+.+|+.+...   ....++++|+++|.
T Consensus       306 l~agkt-~~tlt~hkksvral~lhP~e-~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~nsD~v~~~G~dng~  382 (460)
T KOG0285|consen  306 LRAGKT-MITLTHHKKSVRALCLHPKE-NLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVNSDGVLVSGGDNGS  382 (460)
T ss_pred             eccCce-eEeeecccceeeEEecCCch-hhhhccCCc-cceeccCCccchhhccccccceeeeeeeccCceEEEcCCceE
Confidence            999775 77888899999999999984 588899988 5999999999988888888764422   34568899999999


Q ss_pred             EEEEeccc--------------------ceEEEEecCCCCEEEEEeCCCeEEEeCCCc
Q 004603          703 LLLHRIFL--------------------NLLSVSEWCNPDEISTSSWKDSCCSHRELY  740 (743)
Q Consensus       703 I~vh~~~v--------------------~~l~v~~~~~~~~laSgs~DG~V~iWd~~~  740 (743)
                      +.+|+-..                    ..++.+++..+..|++|..|.+|++|++.-
T Consensus       383 ~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keDe  440 (460)
T KOG0285|consen  383 IMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKEDE  440 (460)
T ss_pred             EEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEeccc
Confidence            99976321                    124555666688999999999999998753

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=99.91  E-value=5.5e-23  Score=218.58  Aligned_cols=242  Identities=19%  Similarity=0.266  Sum_probs=185.9

Q ss_pred             CCCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCC
Q 004603          478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK  557 (743)
Q Consensus       478 ~s~~~s~~~fs~dg~~~l~~~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~  557 (743)
                      +...+.+..|.|...              .++++|+.|-..++|..............+... ..   ...+. ...+..
T Consensus       177 ~~~~V~~~~WnP~~~--------------~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~-~~---~~~~s-~~~nkd  237 (524)
T KOG0273|consen  177 HESEVFICAWNPLRD--------------GLLASGSGDSTARIWNLLENSNIGSTQLVLRHC-IR---EGGKS-VPSNKD  237 (524)
T ss_pred             CCCceEEEecCchhh--------------hhhhccCCccceeeeeehhhccccchhhhhhhh-hh---hhccc-CCccCC
Confidence            556677778887543              478999999999999665421111000000000 00   00000 112346


Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCC-------
Q 004603          558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD-------  630 (743)
Q Consensus       558 V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~-------  630 (743)
                      |++++|+.+|.+||+|+.||.++||+.. +..+.+|..|+++|.++.|+.+|++|++++.|+++.+||..++.       
T Consensus       238 VT~L~Wn~~G~~LatG~~~G~~riw~~~-G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~  316 (524)
T KOG0273|consen  238 VTSLDWNNDGTLLATGSEDGEARIWNKD-GNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEF  316 (524)
T ss_pred             cceEEecCCCCeEEEeecCcEEEEEecC-chhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeee
Confidence            9999999999999999999999999964 67888999999999999999999999999999999999985432       


Q ss_pred             ---------------------------------eeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeE
Q 004603          631 ---------------------------------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG  677 (743)
Q Consensus       631 ---------------------------------~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~  677 (743)
                                                       .++.++.+|.+.|.+|.|+|.|. +|++|+.|++++||.+....+..
T Consensus       317 ~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~-LLaS~SdD~TlkiWs~~~~~~~~  395 (524)
T KOG0273|consen  317 HSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGS-LLASCSDDGTLKIWSMGQSNSVH  395 (524)
T ss_pred             ccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCc-eEEEecCCCeeEeeecCCCcchh
Confidence                                             14667889999999999999986 88899999999999999998888


Q ss_pred             EEeccCc----eeeecCC---------CEEEEEecCCeEEEEeccc------------ceEEEEecCCCCEEEEEeCCCe
Q 004603          678 VFKVCNL----MPIILKG---------CFILNSIFNCYLLLHRIFL------------NLLSVSEWCNPDEISTSSWKDS  732 (743)
Q Consensus       678 ~~~~~~~----i~~s~~g---------~~l~sgs~Dg~I~vh~~~v------------~~l~v~~~~~~~~laSgs~DG~  732 (743)
                      .+..|+.    +.++|+|         ..+++++.|++|++|+...            .+.++.+.+++.++++|+.||.
T Consensus       396 ~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~  475 (524)
T KOG0273|consen  396 DLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGC  475 (524)
T ss_pred             hhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCe
Confidence            8888762    4455544         4699999999999987542            3455566666899999999999


Q ss_pred             EEEeCCCc
Q 004603          733 CCSHRELY  740 (743)
Q Consensus       733 V~iWd~~~  740 (743)
                      |.+|++..
T Consensus       476 V~iws~~~  483 (524)
T KOG0273|consen  476 VHIWSTKT  483 (524)
T ss_pred             eEeccccc
Confidence            99998753

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.90  E-value=1.4e-22  Score=229.21  Aligned_cols=242  Identities=14%  Similarity=0.172  Sum_probs=186.0

Q ss_pred             CCCCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCC----------------------------
Q 004603          477 NGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDAD----------------------------  528 (743)
Q Consensus       477 ~~s~~~s~~~fs~dg~~~l~~~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~----------------------------  528 (743)
                      .+...+-++.|++||               +|||+|+.|+.|+||...+.+.                            
T Consensus       265 ah~gaIw~mKFS~DG---------------KyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~  329 (712)
T KOG0283|consen  265 AHKGAIWAMKFSHDG---------------KYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSE  329 (712)
T ss_pred             ccCCcEEEEEeCCCC---------------ceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccc
Confidence            455677788899988               6999999999999997766110                            


Q ss_pred             ----CCCc---------cccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcc
Q 004603          529 ----PRDR---------VGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE  595 (743)
Q Consensus       529 ----~~~~---------~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~  595 (743)
                          ++..         ...+....-.+..++++.+.||++.|.+|.||. ..+|++++.|++||||++...+|+.+|. 
T Consensus       330 ~~~~~~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK-n~fLLSSSMDKTVRLWh~~~~~CL~~F~-  407 (712)
T KOG0283|consen  330 EKISSRTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK-NNFLLSSSMDKTVRLWHPGRKECLKVFS-  407 (712)
T ss_pred             ccccccccccccccCCccccCCCccccccccchhhhhccchhheeccccc-CCeeEeccccccEEeecCCCcceeeEEe-
Confidence                0000         011122222345567899999999999999995 4589999999999999999999999995 


Q ss_pred             cCCCEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCe
Q 004603          596 HTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS  674 (743)
Q Consensus       596 H~~~V~~vafsp-~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~  674 (743)
                      |.+.|+||+|+| |.++|++|+-|+.||||++....  +.........|+++||.|+|.. .+.|+.+|.+++|+.+..+
T Consensus       408 HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~--Vv~W~Dl~~lITAvcy~PdGk~-avIGt~~G~C~fY~t~~lk  484 (712)
T KOG0283|consen  408 HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKK--VVDWNDLRDLITAVCYSPDGKG-AVIGTFNGYCRFYDTEGLK  484 (712)
T ss_pred             cCCeeEEEEecccCCCcEeecccccceEEeecCcCe--eEeehhhhhhheeEEeccCCce-EEEEEeccEEEEEEccCCe
Confidence            999999999999 78999999999999999998744  3444445588999999999875 4589999999999999777


Q ss_pred             eeEEEec------------cCceeeec-CCCEEEEEecCCeEEEEeccc--------------ceEEEEecCCCCEEEEE
Q 004603          675 CAGVFKV------------CNLMPIIL-KGCFILNSIFNCYLLLHRIFL--------------NLLSVSEWCNPDEISTS  727 (743)
Q Consensus       675 ~v~~~~~------------~~~i~~s~-~g~~l~sgs~Dg~I~vh~~~v--------------~~l~v~~~~~~~~laSg  727 (743)
                      ....+..            .+.+.+.| +...|++.+.|..|+|.+...              .-+...+..++.+|+++
T Consensus       485 ~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~  564 (712)
T KOG0283|consen  485 LVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSA  564 (712)
T ss_pred             EEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEe
Confidence            6554432            13344443 333688999999999977621              11333444568999999


Q ss_pred             eCCCeEEEeCC
Q 004603          728 SWKDSCCSHRE  738 (743)
Q Consensus       728 s~DG~V~iWd~  738 (743)
                      +.|..|++|+.
T Consensus       565 seDs~VYiW~~  575 (712)
T KOG0283|consen  565 SEDSWVYIWKN  575 (712)
T ss_pred             ecCceEEEEeC
Confidence            99999999985

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.90  E-value=4.8e-22  Score=220.95  Aligned_cols=212  Identities=17%  Similarity=0.262  Sum_probs=178.6

Q ss_pred             CEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004603          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES  586 (743)
Q Consensus       507 ~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t  586 (743)
                      .++++|+.|++|++|+...+                   -++.++..|+..|+.+.|+..|+.++++|-||+|+.||+..
T Consensus       363 q~iaTG~eDgKVKvWn~~Sg-------------------fC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkR  423 (893)
T KOG0291|consen  363 QLIATGAEDGKVKVWNTQSG-------------------FCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKR  423 (893)
T ss_pred             cEEEeccCCCcEEEEeccCc-------------------eEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecc
Confidence            69999999999999955433                   57889999999999999999999999999999999999999


Q ss_pred             CeEEEEEcccC-CCEEEEEEcCCCCEEEEEeCCC-eEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCc
Q 004603          587 FTVKSTLEEHT-QWITDVRFSPSLSRLATSSADR-TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE  664 (743)
Q Consensus       587 ~~~i~~l~~H~-~~V~~vafsp~~~~LaSgs~Dg-~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~  664 (743)
                      .+..++|.... ....||+..|.|.+++.|+.|. .|.||++.++.. +-.+.||+++|.+++|+|++. +|+++|.|.+
T Consensus       424 YrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGql-lDiLsGHEgPVs~l~f~~~~~-~LaS~SWDkT  501 (893)
T KOG0291|consen  424 YRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQL-LDILSGHEGPVSGLSFSPDGS-LLASGSWDKT  501 (893)
T ss_pred             cceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCee-eehhcCCCCcceeeEEccccC-eEEeccccce
Confidence            99999997643 3467899999999999988876 599999999876 899999999999999999987 8889999999


Q ss_pred             EEEEECCCC-eeeEEE---eccCceeeecCCCEEEEEecCCeEEEEeccc------------------------------
Q 004603          665 IRYWSINNG-SCAGVF---KVCNLMPIILKGCFILNSIFNCYLLLHRIFL------------------------------  710 (743)
Q Consensus       665 IrvWDl~tg-~~v~~~---~~~~~i~~s~~g~~l~sgs~Dg~I~vh~~~v------------------------------  710 (743)
                      ||+||+-.. ..+.++   .....+.|.|+|.-|++.+.||.|.+|+...                              
T Consensus       502 VRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~  581 (893)
T KOG0291|consen  502 VRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAK  581 (893)
T ss_pred             EEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhccc
Confidence            999998643 233333   3445688999999999999999999976421                              


Q ss_pred             --ceEEEEecCCCCEEEEEeCCCeEEEeCCC
Q 004603          711 --NLLSVSEWCNPDEISTSSWKDSCCSHREL  739 (743)
Q Consensus       711 --~~l~v~~~~~~~~laSgs~DG~V~iWd~~  739 (743)
                        ....++...++..|++||....|++|+-.
T Consensus       582 ~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~  612 (893)
T KOG0291|consen  582 GKTFTTICYSADGKCILAGGESNSICIYDVP  612 (893)
T ss_pred             CCceEEEEEcCCCCEEEecCCcccEEEEECc
Confidence              11223444558899999999999999743

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.90  E-value=1.1e-21  Score=237.43  Aligned_cols=231  Identities=13%  Similarity=0.195  Sum_probs=177.5

Q ss_pred             CCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCe
Q 004603          479 ASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKV  558 (743)
Q Consensus       479 s~~~s~~~fs~dg~~~l~~~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V  558 (743)
                      ...+..+.|++++               +++++|+.|+.|++|+........          .. ....+..+.+ ...|
T Consensus       483 ~~~V~~i~fs~dg---------------~~latgg~D~~I~iwd~~~~~~~~----------~~-~~~~~~~~~~-~~~v  535 (793)
T PLN00181        483 SNLVCAIGFDRDG---------------EFFATAGVNKKIKIFECESIIKDG----------RD-IHYPVVELAS-RSKL  535 (793)
T ss_pred             CCcEEEEEECCCC---------------CEEEEEeCCCEEEEEECCcccccc----------cc-cccceEEecc-cCce
Confidence            4455666677665               689999999999999754311000          00 0011222333 4579


Q ss_pred             EEEEEcC-CCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCeeEEEE
Q 004603          559 ESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTF  636 (743)
Q Consensus       559 ~siafsp-dg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp-~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l  636 (743)
                      .+++|++ ++.+|++|+.|++|+|||+.+++.+..+.+|...|++++|+| ++.+|+||+.|++|++||++++.. +..+
T Consensus       536 ~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~-~~~~  614 (793)
T PLN00181        536 SGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVS-IGTI  614 (793)
T ss_pred             eeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcE-EEEE
Confidence            9999987 578999999999999999999999999999999999999997 788999999999999999998654 6777


Q ss_pred             ecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCe-eeEEEeccCc----eeeecCCCEEEEEecCCeEEEEeccc-
Q 004603          637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVFKVCNL----MPIILKGCFILNSIFNCYLLLHRIFL-  710 (743)
Q Consensus       637 ~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~-~v~~~~~~~~----i~~s~~g~~l~sgs~Dg~I~vh~~~v-  710 (743)
                      ..+ ..|.++.|++....+|++|+.|+.|++||+++++ .+..+.+|..    +.|. ++.+|++++.|++|++|+... 
T Consensus       615 ~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~  692 (793)
T PLN00181        615 KTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMS  692 (793)
T ss_pred             ecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCC
Confidence            654 6799999976655688899999999999999865 4566666643    4454 788999999999999998641 


Q ss_pred             ---------ce--------EEEEecCCCCEEEEEeCCCeEEEeCCC
Q 004603          711 ---------NL--------LSVSEWCNPDEISTSSWKDSCCSHREL  739 (743)
Q Consensus       711 ---------~~--------l~v~~~~~~~~laSgs~DG~V~iWd~~  739 (743)
                               ..        ..+....++.+|++|+.|++|++|+..
T Consensus       693 ~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~  738 (793)
T PLN00181        693 ISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKA  738 (793)
T ss_pred             ccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECC
Confidence                     01        122333447899999999999999853

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.89  E-value=1e-21  Score=211.24  Aligned_cols=147  Identities=27%  Similarity=0.463  Sum_probs=133.3

Q ss_pred             EEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 004603          508 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF  587 (743)
Q Consensus       508 ~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~  587 (743)
                      .+++|+.|+.|.+|                   .+..++...+++.|+.-|.|++|+|||.+|+|++.||+|.|||-.++
T Consensus       162 Ri~T~sdDn~v~ff-------------------eGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktg  222 (603)
T KOG0318|consen  162 RIATGSDDNTVAFF-------------------EGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTG  222 (603)
T ss_pred             EEEeccCCCeEEEe-------------------eCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCc
Confidence            56899999999999                   78888999999999999999999999999999999999999999999


Q ss_pred             eEEEEEc---ccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe---------------------------------
Q 004603          588 TVKSTLE---EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY---------------------------------  631 (743)
Q Consensus       588 ~~i~~l~---~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~---------------------------------  631 (743)
                      +.+..|.   +|.+.|++++|+||+..|+|++.|+++||||+.+.+.                                 
T Consensus       223 e~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~i  302 (603)
T KOG0318|consen  223 EKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTI  302 (603)
T ss_pred             cEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEE
Confidence            9999998   8999999999999999999999999999999875432                                 


Q ss_pred             ---------eEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCe
Q 004603          632 ---------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS  674 (743)
Q Consensus       632 ---------~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~  674 (743)
                               ++.++.||...|+++..+|++. .|++|+.||.|.-||+.++.
T Consensus       303 n~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~-~i~SgsyDG~I~~W~~~~g~  353 (603)
T KOG0318|consen  303 NYLNPSDPSVLKVISGHNKSITALTVSPDGK-TIYSGSYDGHINSWDSGSGT  353 (603)
T ss_pred             EEecccCCChhheecccccceeEEEEcCCCC-EEEeeccCceEEEEecCCcc
Confidence                     2345568999999999999996 55699999999999987654

>PTZ00421 coronin; Provisional

Probab=99.89  E-value=2.8e-21  Score=219.70  Aligned_cols=210  Identities=14%  Similarity=0.162  Sum_probs=165.4

Q ss_pred             cCCCCCceEEEEec-CCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCC
Q 004603          476 HNGASSKSLLMFGS-DGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAS  554 (743)
Q Consensus       476 ~~~s~~~s~~~fs~-dg~~~l~~~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H  554 (743)
                      ..+...+..+.|+| ++               .+|++|+.|++|++|+.......            ......+..+.+|
T Consensus        72 ~GH~~~V~~v~fsP~d~---------------~~LaSgS~DgtIkIWdi~~~~~~------------~~~~~~l~~L~gH  124 (493)
T PTZ00421         72 LGQEGPIIDVAFNPFDP---------------QKLFTASEDGTIMGWGIPEEGLT------------QNISDPIVHLQGH  124 (493)
T ss_pred             eCCCCCEEEEEEcCCCC---------------CEEEEEeCCCEEEEEecCCCccc------------cccCcceEEecCC
Confidence            34456677777877 33               58999999999999977653210            0112356778999


Q ss_pred             CCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeE
Q 004603          555 TSKVESCHFSPDG-KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL  633 (743)
Q Consensus       555 ~~~V~siafspdg-~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l  633 (743)
                      ...|.+|+|+|++ ++|++|+.|++|+|||+++++.+..+.+|...|.+++|+|++.+|++++.|++|++||++++.. +
T Consensus       125 ~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~-v  203 (493)
T PTZ00421        125 TKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTI-V  203 (493)
T ss_pred             CCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcE-E
Confidence            9999999999975 6999999999999999999999999999999999999999999999999999999999998764 7


Q ss_pred             EEEecCCCC-eEEEEEecCCCcEEEEE---eCCCcEEEEECCCCe-eeEEEeccC-----ceeeecCCCEEEEEe-cCCe
Q 004603          634 RTFTGHSTT-VMSLDFHPSKEDLLCSC---DNNSEIRYWSINNGS-CAGVFKVCN-----LMPIILKGCFILNSI-FNCY  702 (743)
Q Consensus       634 ~~l~~h~~~-V~sl~fsp~g~~lL~Sg---s~Dg~IrvWDl~tg~-~v~~~~~~~-----~i~~s~~g~~l~sgs-~Dg~  702 (743)
                      ..+.+|.+. +..+.|.+++..++++|   +.|+.|++||+++.. ++..+..+.     ...+++++.+|++++ .|+.
T Consensus       204 ~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~  283 (493)
T PTZ00421        204 SSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGN  283 (493)
T ss_pred             EEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCe
Confidence            788888765 45678999877666544   357999999999754 333333221     134678999999887 5999


Q ss_pred             EEEEecccceE
Q 004603          703 LLLHRIFLNLL  713 (743)
Q Consensus       703 I~vh~~~v~~l  713 (743)
                      |++|+.....+
T Consensus       284 Iriwdl~~~~~  294 (493)
T PTZ00421        284 IRCFELMNERL  294 (493)
T ss_pred             EEEEEeeCCce
Confidence            99998765443

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.89  E-value=6.1e-21  Score=195.82  Aligned_cols=211  Identities=26%  Similarity=0.448  Sum_probs=175.9

Q ss_pred             CCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004603          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE  585 (743)
Q Consensus       506 ~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~  585 (743)
                      .+++++++.|+.|++|+....                   .....+..|...|.+++|+++++++++++.|+.|++||++
T Consensus        63 ~~~l~~~~~~~~i~i~~~~~~-------------------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~  123 (289)
T cd00200          63 GTYLASGSSDKTIRLWDLETG-------------------ECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVE  123 (289)
T ss_pred             CCEEEEEcCCCeEEEEEcCcc-------------------cceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECC
Confidence            368899999999999965432                   3455667888899999999999999999889999999999


Q ss_pred             CCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcE
Q 004603          586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI  665 (743)
Q Consensus       586 t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~I  665 (743)
                      +++.+..+..|...|.+++|+|++.++++++.|+.|++||++++.. +..+..|...|.+++|+|++..++ +++.|+.|
T Consensus       124 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~-~~~~~~~i  201 (289)
T cd00200         124 TGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKC-VATLTGHTGEVNSVAFSPDGEKLL-SSSSDGTI  201 (289)
T ss_pred             CcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEcccccc-ceeEecCccccceEEECCCcCEEE-EecCCCcE
Confidence            9999999999999999999999988888888899999999987554 777888998999999999986555 66669999


Q ss_pred             EEEECCCCeeeEEEecc----CceeeecCCCEEEEEecCCeEEEEeccc------------ceEEEEecCCCCEEEEEeC
Q 004603          666 RYWSINNGSCAGVFKVC----NLMPIILKGCFILNSIFNCYLLLHRIFL------------NLLSVSEWCNPDEISTSSW  729 (743)
Q Consensus       666 rvWDl~tg~~v~~~~~~----~~i~~s~~g~~l~sgs~Dg~I~vh~~~v------------~~l~v~~~~~~~~laSgs~  729 (743)
                      ++||++.++.+..+..+    ..+.+++++.++++++.|+.|.+|+...            ....+.+..++..+++++.
T Consensus       202 ~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  281 (289)
T cd00200         202 KLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSA  281 (289)
T ss_pred             EEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecC
Confidence            99999998888877544    3467888888999888899999987641            1223334444679999999


Q ss_pred             CCeEEEeC
Q 004603          730 KDSCCSHR  737 (743)
Q Consensus       730 DG~V~iWd  737 (743)
                      ||.|++|+
T Consensus       282 d~~i~iw~  289 (289)
T cd00200         282 DGTIRIWD  289 (289)
T ss_pred             CCeEEecC
Confidence            99999997

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.89  E-value=2.9e-22  Score=203.19  Aligned_cols=195  Identities=19%  Similarity=0.306  Sum_probs=170.1

Q ss_pred             eeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC-CCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEE
Q 004603          546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE-SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW  624 (743)
Q Consensus       546 ~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~-t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvW  624 (743)
                      .++..+.+|++.|+++.|+|+|.+||||+.|..|.+|++. ..+-..++++|++.|..+.|.+++..|++++.|++|+.|
T Consensus        38 ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~w  117 (338)
T KOG0265|consen   38 APIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGW  117 (338)
T ss_pred             chhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEE
Confidence            4556678999999999999999999999999999999964 455667888999999999999999999999999999999


Q ss_pred             ECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEec---cCceeeecCCCEEEEEecCC
Q 004603          625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKV---CNLMPIILKGCFILNSIFNC  701 (743)
Q Consensus       625 Dl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~---~~~i~~s~~g~~l~sgs~Dg  701 (743)
                      |+++++. ++.+++|.+.|++++-+.-|..++++++.|+++|+||+|+..+++++..   .+++.|...+.-+++|+-|+
T Consensus       118 D~~tG~~-~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn  196 (338)
T KOG0265|consen  118 DAETGKR-IRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDN  196 (338)
T ss_pred             eccccee-eehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccC
Confidence            9999775 8999999999999997777888999999999999999999999888843   35678889999999999999


Q ss_pred             eEEEEeccc------------ceEEEEecCCCCEEEEEeCCCeEEEeCCCcc
Q 004603          702 YLLLHRIFL------------NLLSVSEWCNPDEISTSSWKDSCCSHRELYL  741 (743)
Q Consensus       702 ~I~vh~~~v------------~~l~v~~~~~~~~laSgs~DG~V~iWd~~~~  741 (743)
                      .|++|+..-            ....+.....+.++.+-+-|.+|++||-+++
T Consensus       197 ~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~  248 (338)
T KOG0265|consen  197 DIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPF  248 (338)
T ss_pred             ceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEeccc
Confidence            999998721            2233344444789999999999999998765

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.89  E-value=1.9e-21  Score=194.43  Aligned_cols=232  Identities=14%  Similarity=0.138  Sum_probs=194.9

Q ss_pred             ccccCCCCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEee
Q 004603          473 TLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP  552 (743)
Q Consensus       473 ~l~~~~s~~~s~~~fs~dg~~~l~~~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  552 (743)
                      .+...+.++.+-+.|+.+|               .+|.+++.|.++.+|.+.++                   ..+.++.
T Consensus         4 i~l~GHERplTqiKyN~eG---------------DLlFscaKD~~~~vw~s~nG-------------------erlGty~   49 (327)
T KOG0643|consen    4 ILLQGHERPLTQIKYNREG---------------DLLFSCAKDSTPTVWYSLNG-------------------ERLGTYD   49 (327)
T ss_pred             cccccCccccceEEecCCC---------------cEEEEecCCCCceEEEecCC-------------------ceeeeec
Confidence            3445567788888898888               58999999999999977665                   5678999


Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEc--------------------------------------
Q 004603          553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE--------------------------------------  594 (743)
Q Consensus       553 ~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~--------------------------------------  594 (743)
                      +|++.|+||+.+-+.++++||+.|.+++|||+++|+.+..++                                      
T Consensus        50 GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~  129 (327)
T KOG0643|consen   50 GHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRD  129 (327)
T ss_pred             CCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccC
Confidence            999999999999999999999999999999999988765542                                      


Q ss_pred             ---------------ccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEE
Q 004603          595 ---------------EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC  659 (743)
Q Consensus       595 ---------------~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sg  659 (743)
                                     .+...|+.+-|.|-+..|++|..||.|..||++++...+.....|...|++++|+++.. +++++
T Consensus       130 ~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T-~FiT~  208 (327)
T KOG0643|consen  130 DSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRT-YFITG  208 (327)
T ss_pred             ChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcc-eEEec
Confidence                           24456788889999999999999999999999998887888888999999999999976 66799


Q ss_pred             eCCCcEEEEECCCCeeeEEEecc---CceeeecCCCEEEEEecCC----------------------------eEEEEec
Q 004603          660 DNNSEIRYWSINNGSCAGVFKVC---NLMPIILKGCFILNSIFNC----------------------------YLLLHRI  708 (743)
Q Consensus       660 s~Dg~IrvWDl~tg~~v~~~~~~---~~i~~s~~g~~l~sgs~Dg----------------------------~I~vh~~  708 (743)
                      +.|.+-++||+++-++++++...   ++.+++|.-.+++.|+.-.                            .++-|-.
T Consensus       209 s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFG  288 (327)
T KOG0643|consen  209 SKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFG  288 (327)
T ss_pred             ccCccceeeeccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcccccccc
Confidence            99999999999999999999864   4567888777777765422                            2333778


Q ss_pred             ccceEEEEecCCCCEEEEEeCCCeEEE--eCCCcc
Q 004603          709 FLNLLSVSEWCNPDEISTSSWKDSCCS--HRELYL  741 (743)
Q Consensus       709 ~v~~l~v~~~~~~~~laSgs~DG~V~i--Wd~~~~  741 (743)
                      .++.+++.+.  +...+||+.||.|++  +|..|+
T Consensus       289 PINsvAfhPd--GksYsSGGEDG~VR~h~Fd~~YF  321 (327)
T KOG0643|consen  289 PINSVAFHPD--GKSYSSGGEDGYVRLHHFDSNYF  321 (327)
T ss_pred             CcceeEECCC--CcccccCCCCceEEEEEeccchh
Confidence            8888988877  679999999999988  465554

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=99.89  E-value=1e-21  Score=194.66  Aligned_cols=214  Identities=21%  Similarity=0.302  Sum_probs=179.0

Q ss_pred             CCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004603          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE  585 (743)
Q Consensus       506 ~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~  585 (743)
                      .-+|+++++|-+|++|-+.                   +..+.+++....+.|+.+...||++.||+|+. -.||+||++
T Consensus        10 ~viLvsA~YDhTIRfWqa~-------------------tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~   69 (311)
T KOG0315|consen   10 PVILVSAGYDHTIRFWQAL-------------------TGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLN   69 (311)
T ss_pred             ceEEEeccCcceeeeeehh-------------------cCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEcc
Confidence            3588999999999999443                   34677888888888999999999999999985 469999998


Q ss_pred             CCe--EEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCC
Q 004603          586 SFT--VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS  663 (743)
Q Consensus       586 t~~--~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg  663 (743)
                      +.+  ++.+|++|+..|++|.|..+|+.++||+.||++||||+|... |-+.|. |.++|++|..+|+...+| +|..+|
T Consensus        70 S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~-~qR~~~-~~spVn~vvlhpnQteLi-s~dqsg  146 (311)
T KOG0315|consen   70 SNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLS-CQRNYQ-HNSPVNTVVLHPNQTELI-SGDQSG  146 (311)
T ss_pred             CCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcc-cchhcc-CCCCcceEEecCCcceEE-eecCCC
Confidence            754  689999999999999999999999999999999999999844 345554 789999999999976555 999999


Q ss_pred             cEEEEECCCCeeeEEEecc-----CceeeecCCCEEEEEecCCeEEEEeccc------------------ceEEEEecCC
Q 004603          664 EIRYWSINNGSCAGVFKVC-----NLMPIILKGCFILNSIFNCYLLLHRIFL------------------NLLSVSEWCN  720 (743)
Q Consensus       664 ~IrvWDl~tg~~v~~~~~~-----~~i~~s~~g~~l~sgs~Dg~I~vh~~~v------------------~~l~v~~~~~  720 (743)
                      .|+|||+....|.+.+-..     ..+.+.++|.+++.+...|+..+|+...                  ..+..-..++
T Consensus       147 ~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd  226 (311)
T KOG0315|consen  147 NIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPD  226 (311)
T ss_pred             cEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCC
Confidence            9999999998777666432     4467889999999999999999987543                  1233334556


Q ss_pred             CCEEEEEeCCCeEEEeCCCccc
Q 004603          721 PDEISTSSWKDSCCSHRELYLY  742 (743)
Q Consensus       721 ~~~laSgs~DG~V~iWd~~~~~  742 (743)
                      ..+|+++|.|.+|+||+.+-+|
T Consensus       227 ~k~lat~ssdktv~iwn~~~~~  248 (311)
T KOG0315|consen  227 VKYLATCSSDKTVKIWNTDDFF  248 (311)
T ss_pred             CcEEEeecCCceEEEEecCCce
Confidence            8899999999999999876554

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.89  E-value=1.4e-20  Score=193.01  Aligned_cols=226  Identities=25%  Similarity=0.374  Sum_probs=186.6

Q ss_pred             CCCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCC
Q 004603          478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK  557 (743)
Q Consensus       478 ~s~~~s~~~fs~dg~~~l~~~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~  557 (743)
                      +...+.++.|++++               +++++++.|+.+.+|+....                   .....+..|...
T Consensus         8 h~~~i~~~~~~~~~---------------~~l~~~~~~g~i~i~~~~~~-------------------~~~~~~~~~~~~   53 (289)
T cd00200           8 HTGGVTCVAFSPDG---------------KLLATGSGDGTIKVWDLETG-------------------ELLRTLKGHTGP   53 (289)
T ss_pred             cCCCEEEEEEcCCC---------------CEEEEeecCcEEEEEEeeCC-------------------CcEEEEecCCcc
Confidence            34567788888865               58899999999999965433                   145566789999


Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEe
Q 004603          558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT  637 (743)
Q Consensus       558 V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~  637 (743)
                      |.++.|++++++|++++.|+.|++||+.+++.+..+..|...|.++.|++++.++++++.|+.|++||+++.. .+..+.
T Consensus        54 i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~  132 (289)
T cd00200          54 VRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGK-CLTTLR  132 (289)
T ss_pred             eeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcE-EEEEec
Confidence            9999999999999999999999999999888888899999999999999998888888889999999999755 477778


Q ss_pred             cCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEeccC----ceeeecCCCEEEEEecCCeEEEEeccc---
Q 004603          638 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCN----LMPIILKGCFILNSIFNCYLLLHRIFL---  710 (743)
Q Consensus       638 ~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~~----~i~~s~~g~~l~sgs~Dg~I~vh~~~v---  710 (743)
                      .|...|.+++|+|++. ++++++.|+.|++||+++++++..+..+.    .+.+++++.++++++.|+.|.+|+...   
T Consensus       133 ~~~~~i~~~~~~~~~~-~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~  211 (289)
T cd00200         133 GHTDWVNSVAFSPDGT-FVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKC  211 (289)
T ss_pred             cCCCcEEEEEEcCcCC-EEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCce
Confidence            8999999999999854 66677779999999999998888887653    477889999999999999999987642   


Q ss_pred             ---------ceEEEEecCCCCEEEEEeCCCeEEEeCCC
Q 004603          711 ---------NLLSVSEWCNPDEISTSSWKDSCCSHREL  739 (743)
Q Consensus       711 ---------~~l~v~~~~~~~~laSgs~DG~V~iWd~~  739 (743)
                               ....+.+..++.++++++.||.|++||..
T Consensus       212 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~  249 (289)
T cd00200         212 LGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLR  249 (289)
T ss_pred             ecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcC
Confidence                     12223333335677777779999999864

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.89  E-value=6.5e-22  Score=204.97  Aligned_cols=184  Identities=18%  Similarity=0.386  Sum_probs=164.7

Q ss_pred             cCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 004603          503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW  582 (743)
Q Consensus       503 ~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IW  582 (743)
                      .+.+.+|++++.|.+|+.|+...+                   -++.++.+|...|.-++.+.||.++|+|+.|.+|++|
T Consensus       202 ~P~gd~ilS~srD~tik~We~~tg-------------------~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW  262 (406)
T KOG0295|consen  202 LPLGDHILSCSRDNTIKAWECDTG-------------------YCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVW  262 (406)
T ss_pred             EecCCeeeecccccceeEEecccc-------------------eeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEE
Confidence            334479999999999999955443                   5788999999999999999999999999999999999


Q ss_pred             ECCCCeEEEEEcccCCCEEEEEEcCC----------C-----CEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEE
Q 004603          583 CTESFTVKSTLEEHTQWITDVRFSPS----------L-----SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLD  647 (743)
Q Consensus       583 d~~t~~~i~~l~~H~~~V~~vafsp~----------~-----~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~  647 (743)
                      -+.++.+...+++|.-.|.|++|.|.          +     .++++++.|++||+||+.++. |+.++.+|...|.+++
T Consensus       263 ~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~-cL~tL~ghdnwVr~~a  341 (406)
T KOG0295|consen  263 VVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGM-CLFTLVGHDNWVRGVA  341 (406)
T ss_pred             EeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCe-EEEEEecccceeeeeE
Confidence            99999999999999999999999872          2     488999999999999999975 5999999999999999


Q ss_pred             EecCCCcEEEEEeCCCcEEEEECCCCeeeEEEeccCc----eeeecCCCEEEEEecCCeEEEEe
Q 004603          648 FHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNL----MPIILKGCFILNSIFNCYLLLHR  707 (743)
Q Consensus       648 fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~~~----i~~s~~g~~l~sgs~Dg~I~vh~  707 (743)
                      |+|.|+ +|+||.+|++|||||+++++|.+++..|..    +.|+.+..|+++|+.|.++++|.
T Consensus       342 f~p~Gk-yi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwE  404 (406)
T KOG0295|consen  342 FSPGGK-YILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  404 (406)
T ss_pred             EcCCCe-EEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeee
Confidence            999987 555999999999999999999999998754    55667788999999999999985

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.89  E-value=1.2e-21  Score=203.89  Aligned_cols=209  Identities=21%  Similarity=0.255  Sum_probs=163.6

Q ss_pred             CCCCEEEEeeCCCcEEEEecCCCC-CCCCccc-----cccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCC
Q 004603          504 DMDRFVDDGSLDDNVESFLSPDDA-DPRDRVG-----RSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDK  577 (743)
Q Consensus       504 ~~~~~l~sGs~D~~V~iw~s~~~~-~~~~~~~-----~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg  577 (743)
                      .....+++||+|.++++|....+. +......     .-.......+..++.++.||+.+|.+|.|++ ...+++++.|.
T Consensus       203 ~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDH  281 (423)
T KOG0313|consen  203 SSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDH  281 (423)
T ss_pred             CCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccc
Confidence            345788999999999999833222 1111111     1111222344567889999999999999997 67899999999


Q ss_pred             cEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCC--eeEEEEecCCCCeEEEEEecCCCcE
Q 004603          578 KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD--YSLRTFTGHSTTVMSLDFHPSKEDL  655 (743)
Q Consensus       578 ~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~--~~l~~l~~h~~~V~sl~fsp~g~~l  655 (743)
                      +|++||+.++..+.++.+ ...+.|+.++|..++|++|+.|..||+||.|++.  .....|.+|.+.|.++.|+|...+.
T Consensus       282 TIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~  360 (423)
T KOG0313|consen  282 TIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQ  360 (423)
T ss_pred             eEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceE
Confidence            999999999999888876 4568999999999999999999999999999864  4467899999999999999999999


Q ss_pred             EEEEeCCCcEEEEECCCCe-eeEEEeccCceeeecCCCEEEEEecCCeEEEEecccceEEEEecCCCCEEEEEeCCCeEE
Q 004603          656 LCSCDNNSEIRYWSINNGS-CAGVFKVCNLMPIILKGCFILNSIFNCYLLLHRIFLNLLSVSEWCNPDEISTSSWKDSCC  734 (743)
Q Consensus       656 L~Sgs~Dg~IrvWDl~tg~-~v~~~~~~~~i~~s~~g~~l~sgs~Dg~I~vh~~~v~~l~v~~~~~~~~laSgs~DG~V~  734 (743)
                      |++++.|+++++||+|+.+ .+..+.+|.                          .+++++.+.. +.+|++||.|.+|+
T Consensus       361 ~~S~S~D~t~klWDvRS~k~plydI~~h~--------------------------DKvl~vdW~~-~~~IvSGGaD~~l~  413 (423)
T KOG0313|consen  361 LVSGSYDNTVKLWDVRSTKAPLYDIAGHN--------------------------DKVLSVDWNE-GGLIVSGGADNKLR  413 (423)
T ss_pred             EEEEecCCeEEEEEeccCCCcceeeccCC--------------------------ceEEEEeccC-CceEEeccCcceEE
Confidence            9999999999999999876 666666652                          2333344332 56788888888888


Q ss_pred             EeCCCcc
Q 004603          735 SHRELYL  741 (743)
Q Consensus       735 iWd~~~~  741 (743)
                      |+....+
T Consensus       414 i~~~~~~  420 (423)
T KOG0313|consen  414 IFKGSPI  420 (423)
T ss_pred             Eeccccc
Confidence            8776544

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.88  E-value=2.3e-21  Score=221.04  Aligned_cols=209  Identities=20%  Similarity=0.280  Sum_probs=179.0

Q ss_pred             CCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEE-eeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004603          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQL-IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT  584 (743)
Q Consensus       506 ~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~  584 (743)
                      +.++.+|+.|.++++|+...                   ...+.. +.+|.+.|.+++|..-+.++++|+.|++++|||+
T Consensus       218 ~~~~~~~s~~~tl~~~~~~~-------------------~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~  278 (537)
T KOG0274|consen  218 DGFFKSGSDDSTLHLWDLNN-------------------GYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDC  278 (537)
T ss_pred             cCeEEecCCCceeEEeeccc-------------------ceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEec
Confidence            57899999999999994433                   345555 9999999999999887889999999999999999


Q ss_pred             CCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCc
Q 004603          585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE  664 (743)
Q Consensus       585 ~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~  664 (743)
                      .++.+..++.+|...|.++...+  .++++|+.|.+|++|++.++.. +.++.+|...|.++.++   ..++++|+.|++
T Consensus       279 ~sg~C~~~l~gh~stv~~~~~~~--~~~~sgs~D~tVkVW~v~n~~~-l~l~~~h~~~V~~v~~~---~~~lvsgs~d~~  352 (537)
T KOG0274|consen  279 STGECTHSLQGHTSSVRCLTIDP--FLLVSGSRDNTVKVWDVTNGAC-LNLLRGHTGPVNCVQLD---EPLLVSGSYDGT  352 (537)
T ss_pred             CCCcEEEEecCCCceEEEEEccC--ceEeeccCCceEEEEeccCcce-EEEeccccccEEEEEec---CCEEEEEecCce
Confidence            99999999999999999998754  5788899999999999998664 99999999999999998   337889999999


Q ss_pred             EEEEECCCCeeeEEEeccCc--eeeecCC-CEEEEEecCCeEEEEecccc--eEE---------EEecCCCCEEEEEeCC
Q 004603          665 IRYWSINNGSCAGVFKVCNL--MPIILKG-CFILNSIFNCYLLLHRIFLN--LLS---------VSEWCNPDEISTSSWK  730 (743)
Q Consensus       665 IrvWDl~tg~~v~~~~~~~~--i~~s~~g-~~l~sgs~Dg~I~vh~~~v~--~l~---------v~~~~~~~~laSgs~D  730 (743)
                      |+|||+++++|++++.+|+.  .++..++ ..+++|+.|++|++|+....  ++.         .........+++++.|
T Consensus       353 v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~~~~Lvs~~aD  432 (537)
T KOG0274|consen  353 VKVWDPRTGKCLKSLSGHTGRVYSLIVDSENRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLRDNFLVSSSAD  432 (537)
T ss_pred             EEEEEhhhceeeeeecCCcceEEEEEecCcceEEeeeeccceEeecCCchhhhhhhhcCCcccccccccccceeEecccc
Confidence            99999999999999999876  3455677 99999999999999998765  111         1112226789999999


Q ss_pred             CeEEEeCCC
Q 004603          731 DSCCSHREL  739 (743)
Q Consensus       731 G~V~iWd~~  739 (743)
                      ++|++||..
T Consensus       433 ~~Ik~WD~~  441 (537)
T KOG0274|consen  433 GTIKLWDAE  441 (537)
T ss_pred             ccEEEeecc
Confidence            999999754

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.88  E-value=9.8e-22  Score=217.18  Aligned_cols=237  Identities=20%  Similarity=0.245  Sum_probs=188.3

Q ss_pred             cccCCCCCceEEEEecCCCcc-----------ccccCccccCCCC-EEEEeeCCCcEEEEecCCCCCCCCccccccccCC
Q 004603          474 LQHNGASSKSLLMFGSDGMGS-----------LTSAPNQLTDMDR-FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGK  541 (743)
Q Consensus       474 l~~~~s~~~s~~~fs~dg~~~-----------l~~~~~~l~~~~~-~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~  541 (743)
                      ...+++++.+...|.+.+..-           +.....+....++ .+++|+.|.+|.+|                   +
T Consensus        27 ~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~-------------------~   87 (745)
T KOG0301|consen   27 CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVF-------------------K   87 (745)
T ss_pred             EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEE-------------------e
Confidence            456678888888888754411           1111122222333 37889999999999                   4


Q ss_pred             CceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeE
Q 004603          542 GFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTV  621 (743)
Q Consensus       542 ~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~V  621 (743)
                      .....++.++++|...|+|++...++. +++||.|.+++||-.  +++...+.+|+..|+++++-|+. .++||+.|++|
T Consensus        88 ~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtI  163 (745)
T KOG0301|consen   88 LSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPEN-TYVTGSADKTI  163 (745)
T ss_pred             cCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecc--hhhhcccCCcchheeeeeecCCC-cEEeccCccee
Confidence            445578889999999999999888887 999999999999975  46667799999999999999987 89999999999


Q ss_pred             EEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEeccCceeee----cCCCEEEEE
Q 004603          622 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNLMPII----LKGCFILNS  697 (743)
Q Consensus       622 rvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~~~i~~s----~~g~~l~sg  697 (743)
                      |+|.-   ..++++|.+|++.|..|++-+++.  |+||+.||.|+.|++ +|+++..+.+|+...++    .+...++++
T Consensus       164 klWk~---~~~l~tf~gHtD~VRgL~vl~~~~--flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~  237 (745)
T KOG0301|consen  164 KLWKG---GTLLKTFSGHTDCVRGLAVLDDSH--FLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVST  237 (745)
T ss_pred             eeccC---CchhhhhccchhheeeeEEecCCC--eEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEe
Confidence            99985   345899999999999999999865  559999999999999 79999999999875544    678899999


Q ss_pred             ecCCeEEEEecccceEE--------EEec-CCCCEEEEEeCCCeEEEeCCC
Q 004603          698 IFNCYLLLHRIFLNLLS--------VSEW-CNPDEISTSSWKDSCCSHREL  739 (743)
Q Consensus       698 s~Dg~I~vh~~~v~~l~--------v~~~-~~~~~laSgs~DG~V~iWd~~  739 (743)
                      ++|+++++|+.....-.        |+.. -..+.|++|+.||.||||...
T Consensus       238 gEDrtlriW~~~e~~q~I~lPttsiWsa~~L~NgDIvvg~SDG~VrVfT~~  288 (745)
T KOG0301|consen  238 GEDRTLRIWKKDECVQVITLPTTSIWSAKVLLNGDIVVGGSDGRVRVFTVD  288 (745)
T ss_pred             cCCceEEEeecCceEEEEecCccceEEEEEeeCCCEEEeccCceEEEEEec
Confidence            99999999988743221        1111 126789999999999999643

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.88  E-value=1.3e-21  Score=203.76  Aligned_cols=212  Identities=16%  Similarity=0.221  Sum_probs=174.8

Q ss_pred             CCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcC---CCCEEEEEeCCCcEEEE
Q 004603          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP---DGKLLATGGHDKKAVLW  582 (743)
Q Consensus       506 ~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafsp---dg~~LaSgs~Dg~V~IW  582 (743)
                      .+++.+|++||.+++|+.                 +|   +....+.+|+++|.+++|.-   ....|++++.|.++++|
T Consensus       115 ~~~IltgsYDg~~riWd~-----------------~G---k~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw  174 (423)
T KOG0313|consen  115 SKWILTGSYDGTSRIWDL-----------------KG---KSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLW  174 (423)
T ss_pred             CceEEEeecCCeeEEEec-----------------CC---ceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEE
Confidence            589999999999999933                 33   56788899999999998854   23469999999999999


Q ss_pred             ECCCCeE----EEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCC------------------------CeeEE
Q 004603          583 CTESFTV----KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP------------------------DYSLR  634 (743)
Q Consensus       583 d~~t~~~----i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~------------------------~~~l~  634 (743)
                      -.+.++.    +....||...|-+|+..+++.++++|+.|.+|+||+..+.                        +.++.
T Consensus       175 ~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~v  254 (423)
T KOG0313|consen  175 KWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLV  254 (423)
T ss_pred             EecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceE
Confidence            8876543    2334599999999999999999999999999999993210                        12577


Q ss_pred             EEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEecc---CceeeecCCCEEEEEecCCeEEEEeccc-
Q 004603          635 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVC---NLMPIILKGCFILNSIFNCYLLLHRIFL-  710 (743)
Q Consensus       635 ~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~---~~i~~s~~g~~l~sgs~Dg~I~vh~~~v-  710 (743)
                      ++.||+.+|.+|.|++.  ..+++++.|.+|++||+.++.++..+.+.   .++.+++....|++|+.|..+++|+... 
T Consensus       255 tl~GHt~~Vs~V~w~d~--~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~  332 (423)
T KOG0313|consen  255 TLEGHTEPVSSVVWSDA--TVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTG  332 (423)
T ss_pred             EecccccceeeEEEcCC--CceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCCCCC
Confidence            89999999999999984  46779999999999999999998888765   4467788999999999999999976543 


Q ss_pred             ----------------ceEEEEecCCCCEEEEEeCCCeEEEeCCCc
Q 004603          711 ----------------NLLSVSEWCNPDEISTSSWKDSCCSHRELY  740 (743)
Q Consensus       711 ----------------~~l~v~~~~~~~~laSgs~DG~V~iWd~~~  740 (743)
                                      ..+.|++.. .-.|++|++|++|++||.+.
T Consensus       333 ~gs~v~~s~~gH~nwVssvkwsp~~-~~~~~S~S~D~t~klWDvRS  377 (423)
T KOG0313|consen  333 DGSVVSQSLIGHKNWVSSVKWSPTN-EFQLVSGSYDNTVKLWDVRS  377 (423)
T ss_pred             CCceeEEeeecchhhhhheecCCCC-ceEEEEEecCCeEEEEEecc
Confidence                            334444432 56899999999999999763

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.88  E-value=6.6e-22  Score=223.74  Aligned_cols=189  Identities=25%  Similarity=0.309  Sum_probs=157.9

Q ss_pred             eeEEEee-CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC--------------------------------------
Q 004603          546 TEFQLIP-ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES--------------------------------------  586 (743)
Q Consensus       546 ~~~~~l~-~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t--------------------------------------  586 (743)
                      .....+. +|.+.|+|+.||+||++||+||.|+.|+||.+..                                      
T Consensus       257 ~~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~  336 (712)
T KOG0283|consen  257 TVVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRT  336 (712)
T ss_pred             EEeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccc
Confidence            4455566 8999999999999999999999999999997643                                      


Q ss_pred             ----------------------CeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeE
Q 004603          587 ----------------------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVM  644 (743)
Q Consensus       587 ----------------------~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~  644 (743)
                                            .++++.|.||++.|.++.|+.+ .+|+|++.|+|||+|++.. +.|+.+|. |.+.|+
T Consensus       337 s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~-~~CL~~F~-HndfVT  413 (712)
T KOG0283|consen  337 SSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGR-KECLKVFS-HNDFVT  413 (712)
T ss_pred             cccccccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCC-cceeeEEe-cCCeeE
Confidence                                  0123445799999999999976 6899999999999999997 55699997 999999


Q ss_pred             EEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEec---cCceeeecCCCEEEEEecCCeEEEEecc------------
Q 004603          645 SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKV---CNLMPIILKGCFILNSIFNCYLLLHRIF------------  709 (743)
Q Consensus       645 sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~---~~~i~~s~~g~~l~sgs~Dg~I~vh~~~------------  709 (743)
                      ||+|+|..+.+|++|+-||.||||++...+.+.....   .+++++.|+|.+.+.|+.+|..++++..            
T Consensus       414 cVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~  493 (712)
T KOG0283|consen  414 CVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRL  493 (712)
T ss_pred             EEEecccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEee
Confidence            9999999889999999999999999998888766654   4778999999999999999998883322            


Q ss_pred             ----------cceEEEEecCCCCEEEEEeCCCeEEEeCC
Q 004603          710 ----------LNLLSVSEWCNPDEISTSSWKDSCCSHRE  738 (743)
Q Consensus       710 ----------v~~l~v~~~~~~~~laSgs~DG~V~iWd~  738 (743)
                                |+.+-+.+.. ...|+..+.|..|+|+|.
T Consensus       494 ~~~Kk~~~~rITG~Q~~p~~-~~~vLVTSnDSrIRI~d~  531 (712)
T KOG0283|consen  494 HNKKKKQGKRITGLQFFPGD-PDEVLVTSNDSRIRIYDG  531 (712)
T ss_pred             ccCccccCceeeeeEecCCC-CCeEEEecCCCceEEEec
Confidence                      3333333332 457999999999999997

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.88  E-value=5.4e-21  Score=218.06  Aligned_cols=241  Identities=20%  Similarity=0.238  Sum_probs=193.0

Q ss_pred             ccccCCCCCceEEEEecCCCccccc----cCcc-----ccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCc
Q 004603          473 TLQHNGASSKSLLMFGSDGMGSLTS----APNQ-----LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGF  543 (743)
Q Consensus       473 ~l~~~~s~~~s~~~fs~dg~~~l~~----~~~~-----l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~  543 (743)
                      .....++.+..+..|+......+..    ....     +...+.++++|+.|.++++|+...+                 
T Consensus       219 ~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg-----------------  281 (537)
T KOG0274|consen  219 GFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTG-----------------  281 (537)
T ss_pred             CeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCC-----------------
Confidence            3444566666666777655422211    1111     1223689999999999999954443                 


Q ss_pred             eeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEE
Q 004603          544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV  623 (743)
Q Consensus       544 ~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~Vrv  623 (743)
                        ...+.+.+|.+.|.|+..  ...++++|+.|.+|+||++.++.++.++.+|.+.|.+|..+  +.++++|+.|++|+|
T Consensus       282 --~C~~~l~gh~stv~~~~~--~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~V  355 (537)
T KOG0274|consen  282 --ECTHSLQGHTSSVRCLTI--DPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKV  355 (537)
T ss_pred             --cEEEEecCCCceEEEEEc--cCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEE
Confidence              678899999999999987  45678899999999999999999999999999999999997  789999999999999


Q ss_pred             EECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCC-eeeEEEeccCcee--eecCCCEEEEEecC
Q 004603          624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFKVCNLMP--IILKGCFILNSIFN  700 (743)
Q Consensus       624 WDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg-~~v~~~~~~~~i~--~s~~g~~l~sgs~D  700 (743)
                      ||+++++ |+.++.+|...|+++.+...  ..+++|+.|++|++||++++ +|+.++.+|..+.  +...+.+|++++.|
T Consensus       356 W~~~~~~-cl~sl~gH~~~V~sl~~~~~--~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~~~~Lvs~~aD  432 (537)
T KOG0274|consen  356 WDPRTGK-CLKSLSGHTGRVYSLIVDSE--NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLRDNFLVSSSAD  432 (537)
T ss_pred             EEhhhce-eeeeecCCcceEEEEEecCc--ceEEeeeeccceEeecCCchhhhhhhhcCCcccccccccccceeEecccc
Confidence            9999765 59999999999999988764  46779999999999999999 9999999997754  45788999999999


Q ss_pred             CeEEEEecccce----------EEEEecCC-CCEEEEEeCCCeEEEeCCC
Q 004603          701 CYLLLHRIFLNL----------LSVSEWCN-PDEISTSSWKDSCCSHREL  739 (743)
Q Consensus       701 g~I~vh~~~v~~----------l~v~~~~~-~~~laSgs~DG~V~iWd~~  739 (743)
                      ++|++|+.....          ..+..... ...+++++.||++++||-+
T Consensus       433 ~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~~~~il~s~~~~~~~l~dl~  482 (537)
T KOG0274|consen  433 GTIKLWDAEEGECLRTLEGRHVGGVSALALGKEEILCSSDDGSVKLWDLR  482 (537)
T ss_pred             ccEEEeecccCceeeeeccCCcccEEEeecCcceEEEEecCCeeEEEecc
Confidence            999999754311          11111111 2689999999999999865

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.87  E-value=5.4e-21  Score=204.65  Aligned_cols=213  Identities=19%  Similarity=0.275  Sum_probs=172.4

Q ss_pred             ccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcC-CCCEEEEEeCCCcEE
Q 004603          502 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAV  580 (743)
Q Consensus       502 l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafsp-dg~~LaSgs~Dg~V~  580 (743)
                      +...++++++|...|.|++|+.                   .+-..+..+.+|+.+|..+.|+| ++..|++|++|+.++
T Consensus        76 fR~DG~LlaaGD~sG~V~vfD~-------------------k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k  136 (487)
T KOG0310|consen   76 FRSDGRLLAAGDESGHVKVFDM-------------------KSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVK  136 (487)
T ss_pred             eecCCeEEEccCCcCcEEEecc-------------------ccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEE
Confidence            3444589999999999999942                   11234567789999999999999 667889999999999


Q ss_pred             EEECCCCeEEEEEcccCCCEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEE
Q 004603          581 LWCTESFTVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC  659 (743)
Q Consensus       581 IWd~~t~~~i~~l~~H~~~V~~vafsp~-~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sg  659 (743)
                      +||+.+......+.+|++.|.|.+|+|- +..++||+.||+||+||++.....+.++. |..+|.++.|-|.|. +++++
T Consensus       137 ~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsgs-~iasA  214 (487)
T KOG0310|consen  137 YWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALPSGS-LIASA  214 (487)
T ss_pred             EEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCceeeEEEcCCCC-EEEEc
Confidence            9999998877789999999999999994 66899999999999999998755466665 899999999999976 66677


Q ss_pred             eCCCcEEEEECCCC-eeeEEEe----ccCceeeecCCCEEEEEecCCeEEEEe-----------cccceEEEEecCCCCE
Q 004603          660 DNNSEIRYWSINNG-SCAGVFK----VCNLMPIILKGCFILNSIFNCYLLLHR-----------IFLNLLSVSEWCNPDE  723 (743)
Q Consensus       660 s~Dg~IrvWDl~tg-~~v~~~~----~~~~i~~s~~g~~l~sgs~Dg~I~vh~-----------~~v~~l~v~~~~~~~~  723 (743)
                      + ...|+|||+-+| +.+..+.    ..+++.+..++..|++|+.|+.|++++           .+...+++...++...
T Consensus       215 g-Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t  293 (487)
T KOG0310|consen  215 G-GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQT  293 (487)
T ss_pred             C-CCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeecccceeeEEecCCCce
Confidence            7 457999999965 4443333    235677778999999999999999944           4455566666666789


Q ss_pred             EEEEeCCCeEEEe
Q 004603          724 ISTSSWKDSCCSH  736 (743)
Q Consensus       724 laSgs~DG~V~iW  736 (743)
                      ++.|-.||.+.+=
T Consensus       294 ~viGmsnGlv~~r  306 (487)
T KOG0310|consen  294 VVIGMSNGLVSIR  306 (487)
T ss_pred             EEEecccceeeee
Confidence            9999999988764

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.87  E-value=1.8e-21  Score=197.62  Aligned_cols=217  Identities=16%  Similarity=0.240  Sum_probs=169.4

Q ss_pred             cCCCCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCC
Q 004603          476 HNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST  555 (743)
Q Consensus       476 ~~~s~~~s~~~fs~dg~~~l~~~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~  555 (743)
                      ..+...+++-.|++||               .++++|+.|..|++++...-.... .............-..++++..|.
T Consensus       109 t~HK~~cR~aafs~DG---------------~lvATGsaD~SIKildvermlaks-~~~em~~~~~qa~hPvIRTlYDH~  172 (430)
T KOG0640|consen  109 TSHKSPCRAAAFSPDG---------------SLVATGSADASIKILDVERMLAKS-KPKEMISGDTQARHPVIRTLYDHV  172 (430)
T ss_pred             eecccceeeeeeCCCC---------------cEEEccCCcceEEEeehhhhhhhc-chhhhccCCcccCCceEeehhhcc
Confidence            3455677888899988               599999999999999765322111 111111111222235688999999


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEc--ccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeE
Q 004603          556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE--EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL  633 (743)
Q Consensus       556 ~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~--~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l  633 (743)
                      +.|+++.|+|....|++|+.|++|++||+......+.++  .....|.++.|||.|.+|+.|....++|+||+.+..+.+
T Consensus       173 devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfv  252 (430)
T KOG0640|consen  173 DEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFV  252 (430)
T ss_pred             CcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEee
Confidence            999999999999999999999999999987533222222  245689999999999999999999999999999865433


Q ss_pred             EE--EecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEec-c-----CceeeecCCCEEEEEecCCeEEE
Q 004603          634 RT--FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKV-C-----NLMPIILKGCFILNSIFNCYLLL  705 (743)
Q Consensus       634 ~~--l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~-~-----~~i~~s~~g~~l~sgs~Dg~I~v  705 (743)
                      ..  -..|++.|++|.+++.+. +.++++.||.|++||--+++|+.++.. |     ....|..+|+|+++.+.|.++++
T Consensus       253 sanPd~qht~ai~~V~Ys~t~~-lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkL  331 (430)
T KOG0640|consen  253 SANPDDQHTGAITQVRYSSTGS-LYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKL  331 (430)
T ss_pred             ecCcccccccceeEEEecCCcc-EEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeee
Confidence            22  236899999999999986 778999999999999999999988863 2     22458899999999999999999


Q ss_pred             Eecc
Q 004603          706 HRIF  709 (743)
Q Consensus       706 h~~~  709 (743)
                      |...
T Consensus       332 WEi~  335 (430)
T KOG0640|consen  332 WEIS  335 (430)
T ss_pred             eeec
Confidence            7643

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.87  E-value=2.3e-21  Score=206.21  Aligned_cols=210  Identities=20%  Similarity=0.271  Sum_probs=162.9

Q ss_pred             CEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECC
Q 004603          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTE  585 (743)
Q Consensus       507 ~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafsp-dg~~LaSgs~Dg~V~IWd~~  585 (743)
                      -.+++|+.|..|++|+......            .+....+...+.+|++.|..++|++ +..+|+++++|+.+.|||++
T Consensus       191 g~Lls~~~d~~i~lwdi~~~~~------------~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R  258 (422)
T KOG0264|consen  191 GTLLSGSDDHTICLWDINAESK------------EDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTR  258 (422)
T ss_pred             eeEeeccCCCcEEEEecccccc------------CCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcC
Confidence            4678999999999998766531            1334566788899999999999999 77799999999999999999


Q ss_pred             --CCeEEEEEcccCCCEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCC
Q 004603          586 --SFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN  662 (743)
Q Consensus       586 --t~~~i~~l~~H~~~V~~vafsp-~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~D  662 (743)
                        +.++.....+|++.|.|++|+| ++..||||+.|++|++||+|+...++.++.+|...|..|.|+|....+|++++.|
T Consensus       259 ~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D  338 (422)
T KOG0264|consen  259 SNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTD  338 (422)
T ss_pred             CCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccC
Confidence              5667778889999999999999 5778899999999999999999889999999999999999999999999999999


Q ss_pred             CcEEEEECCCCeeeEEEeccCceeeecCCCEEEEEecCCeEEEEecccceEEEEecCCCCEEEEEeCCCeEEEeCCC
Q 004603          663 SEIRYWSINNGSCAGVFKVCNLMPIILKGCFILNSIFNCYLLLHRIFLNLLSVSEWCNPDEISTSSWKDSCCSHREL  739 (743)
Q Consensus       663 g~IrvWDl~tg~~v~~~~~~~~i~~s~~g~~l~sgs~Dg~I~vh~~~v~~l~v~~~~~~~~laSgs~DG~V~iWd~~  739 (743)
                      +.+.|||+..-.....   .....-.|.+-+++-|+       |...+..+.|++.. +-.|+|.+.|+.+.||+-.
T Consensus       339 ~rl~vWDls~ig~eq~---~eda~dgppEllF~HgG-------H~~kV~DfsWnp~e-PW~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  339 RRLNVWDLSRIGEEQS---PEDAEDGPPELLFIHGG-------HTAKVSDFSWNPNE-PWTIASVAEDNILQIWQMA  404 (422)
T ss_pred             CcEEEEeccccccccC---hhhhccCCcceeEEecC-------cccccccccCCCCC-CeEEEEecCCceEEEeecc
Confidence            9999999974221111   00000112222222222       33345556666554 5677778888888888643

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.87  E-value=1.3e-20  Score=195.41  Aligned_cols=155  Identities=21%  Similarity=0.324  Sum_probs=139.3

Q ss_pred             CCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004603          505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT  584 (743)
Q Consensus       505 ~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~  584 (743)
                      ..+++++|+.|....+|....+                   .....+.+|++.|+|+.|+.||.+||||+-+|.|+||.+
T Consensus        75 ~~~l~aTGGgDD~AflW~~~~g-------------------e~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~  135 (399)
T KOG0296|consen   75 NNNLVATGGGDDLAFLWDISTG-------------------EFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKV  135 (399)
T ss_pred             CCceEEecCCCceEEEEEccCC-------------------cceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEc
Confidence            3489999999999999966554                   356788999999999999999999999999999999999


Q ss_pred             CCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCc
Q 004603          585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE  664 (743)
Q Consensus       585 ~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~  664 (743)
                      .++.....+...-..|.=+.|||.+..|+.|+.||.|-+|.+.+... ...+.||..++++=+|.|+|+.++ ++..||+
T Consensus       136 stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~-~kv~~Gh~~~ct~G~f~pdGKr~~-tgy~dgt  213 (399)
T KOG0296|consen  136 STGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQAL-CKVMSGHNSPCTCGEFIPDGKRIL-TGYDDGT  213 (399)
T ss_pred             ccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcce-eeEecCCCCCcccccccCCCceEE-EEecCce
Confidence            99998888876677788999999999999999999999999998644 789999999999999999988555 8999999


Q ss_pred             EEEEECCCCeeeEEEe
Q 004603          665 IRYWSINNGSCAGVFK  680 (743)
Q Consensus       665 IrvWDl~tg~~v~~~~  680 (743)
                      |++||+.++.+++.+.
T Consensus       214 i~~Wn~ktg~p~~~~~  229 (399)
T KOG0296|consen  214 IIVWNPKTGQPLHKIT  229 (399)
T ss_pred             EEEEecCCCceeEEec
Confidence            9999999998887776

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.87  E-value=1.8e-20  Score=190.41  Aligned_cols=229  Identities=18%  Similarity=0.223  Sum_probs=170.0

Q ss_pred             ccccCCCCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEee
Q 004603          473 TLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP  552 (743)
Q Consensus       473 ~l~~~~s~~~s~~~fs~dg~~~l~~~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  552 (743)
                      .+...+.+.++.+.|+|-.              +.+++.||||++|++|...+..               . ... +...
T Consensus        21 ev~~pP~DsIS~l~FSP~~--------------~~~~~A~SWD~tVR~wevq~~g---------------~-~~~-ka~~   69 (347)
T KOG0647|consen   21 EVPNPPEDSISALAFSPQA--------------DNLLAAGSWDGTVRIWEVQNSG---------------Q-LVP-KAQQ   69 (347)
T ss_pred             ecCCCcccchheeEecccc--------------CceEEecccCCceEEEEEecCC---------------c-ccc-hhhh
Confidence            3445566678888999833              2688999999999999775531               0 011 4456


Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCC--EEEEEeCCCeEEEEECCCCC
Q 004603          553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS--RLATSSADRTVRVWDTENPD  630 (743)
Q Consensus       553 ~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~--~LaSgs~Dg~VrvWDl~~~~  630 (743)
                      .|.++|.|++|+.||..+++|+.|+.+++||+.++. +..+..|.++|.+++|-+...  .|+||++|++||+||.|...
T Consensus        70 ~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~  148 (347)
T KOG0647|consen   70 SHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSN  148 (347)
T ss_pred             ccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCC
Confidence            799999999999999999999999999999999984 557778999999999988655  89999999999999999755


Q ss_pred             eeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeE-E----Ee-ccCceeeecCCCEEEEEecCCeEE
Q 004603          631 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG-V----FK-VCNLMPIILKGCFILNSIFNCYLL  704 (743)
Q Consensus       631 ~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~-~----~~-~~~~i~~s~~g~~l~sgs~Dg~I~  704 (743)
                       ++.++. ....|++++.-.   .+++.+..++.|.+|+|+++.... .    ++ -+.++++..+....+.|+-+|++.
T Consensus       149 -pv~t~~-LPeRvYa~Dv~~---pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~  223 (347)
T KOG0647|consen  149 -PVATLQ-LPERVYAADVLY---PMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVA  223 (347)
T ss_pred             -eeeeee-ccceeeehhccC---ceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEE
Confidence             366665 446688777643   367777889999999997654221 1    11 124466666666667888777777


Q ss_pred             EEecc-------------------------cceEEEEecCCCCEEEEEeCCCeEEEeCCCc
Q 004603          705 LHRIF-------------------------LNLLSVSEWCNPDEISTSSWKDSCCSHRELY  740 (743)
Q Consensus       705 vh~~~-------------------------v~~l~v~~~~~~~~laSgs~DG~V~iWd~~~  740 (743)
                      ++.+.                         +..+++.+.  .+.|+|+|.||++.+||...
T Consensus       224 iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~--hgtlvTaGsDGtf~FWDkda  282 (347)
T KOG0647|consen  224 IQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPV--HGTLVTAGSDGTFSFWDKDA  282 (347)
T ss_pred             EEecCCCCccCceeEEEeccCCCCCCceEEecceEeecc--cceEEEecCCceEEEecchh
Confidence            73222                         223333333  67899999999999999753

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.87  E-value=2.3e-21  Score=203.13  Aligned_cols=232  Identities=16%  Similarity=0.233  Sum_probs=181.8

Q ss_pred             cccCCCCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeC
Q 004603          474 LQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPA  553 (743)
Q Consensus       474 l~~~~s~~~s~~~fs~dg~~~l~~~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  553 (743)
                      ....++..+-.+.|+++|               +++|+++.|.+.-+|....+                ..++..+++.+
T Consensus       219 il~~htdEVWfl~FS~nG---------------kyLAsaSkD~Taiiw~v~~d----------------~~~kl~~tlvg  267 (519)
T KOG0293|consen  219 ILQDHTDEVWFLQFSHNG---------------KYLASASKDSTAIIWIVVYD----------------VHFKLKKTLVG  267 (519)
T ss_pred             hHhhCCCcEEEEEEcCCC---------------eeEeeccCCceEEEEEEecC----------------cceeeeeeeec
Confidence            445566777888899888               69999999999999965443                22678899999


Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEc-ccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCC--
Q 004603          554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD--  630 (743)
Q Consensus       554 H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~-~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~--  630 (743)
                      |..+|.-|.||||.++|++|+.|..+++||+.++.+...+. +|...+.+++|.|||..+++|+.|++|..||++...  
T Consensus       268 h~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~  347 (519)
T KOG0293|consen  268 HSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILG  347 (519)
T ss_pred             ccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhh
Confidence            99999999999999999999999999999999999887764 345789999999999999999999999999975311  


Q ss_pred             --------------------eeEEE------------------EecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCC
Q 004603          631 --------------------YSLRT------------------FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN  672 (743)
Q Consensus       631 --------------------~~l~~------------------l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~t  672 (743)
                                          ..+..                  +.....+|++++.+.+++.+|+ .-.+.+|++||+..
T Consensus       348 ~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~Lv-nL~~qei~LWDl~e  426 (519)
T KOG0293|consen  348 NWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALV-NLQDQEIHLWDLEE  426 (519)
T ss_pred             cccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEE-EcccCeeEEeecch
Confidence                                00000                  1123356888888888876664 44577899999998


Q ss_pred             CeeeEEEeccCce------eee-cCCCEEEEEecCCeEEEEecc--------------cceEEEEecCCCCEEEEEeCCC
Q 004603          673 GSCAGVFKVCNLM------PII-LKGCFILNSIFNCYLLLHRIF--------------LNLLSVSEWCNPDEISTSSWKD  731 (743)
Q Consensus       673 g~~v~~~~~~~~i------~~s-~~g~~l~sgs~Dg~I~vh~~~--------------v~~l~v~~~~~~~~laSgs~DG  731 (743)
                      .+.+..+.+|..-      ||. .+..++++|++|+.|.||...              +++++|.+.. +..+||+|.||
T Consensus       427 ~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~-p~m~ASasDDg  505 (519)
T KOG0293|consen  427 NKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPAD-PEMFASASDDG  505 (519)
T ss_pred             hhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCC-HHHhhccCCCC
Confidence            8888888887542      222 355789999999999997543              3445555443 68999999999


Q ss_pred             eEEEeCC
Q 004603          732 SCCSHRE  738 (743)
Q Consensus       732 ~V~iWd~  738 (743)
                      +|+||..
T Consensus       506 tIRIWg~  512 (519)
T KOG0293|consen  506 TIRIWGP  512 (519)
T ss_pred             eEEEecC
Confidence            9999964

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.86  E-value=1.5e-20  Score=211.62  Aligned_cols=211  Identities=15%  Similarity=0.228  Sum_probs=174.4

Q ss_pred             CEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004603          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES  586 (743)
Q Consensus       507 ~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t  586 (743)
                      .+.++|+.|..|++|                   ....-+++.++.||-+.|..+.|++.-.+|+++|+|-+|+||+..+
T Consensus        64 plFVSGGDDykIkVW-------------------nYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqs  124 (1202)
T KOG0292|consen   64 PLFVSGGDDYKIKVW-------------------NYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQS  124 (1202)
T ss_pred             CeEEecCCccEEEEE-------------------ecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccC
Confidence            689999999999999                   3344567888999999999999999999999999999999999999


Q ss_pred             CeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCC----------------------------eeEEEEec
Q 004603          587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD----------------------------YSLRTFTG  638 (743)
Q Consensus       587 ~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~----------------------------~~l~~l~~  638 (743)
                      .+++.+++||...|.|..|||....++|+|-|-+|||||+.--+                            .....+.|
T Consensus       125 r~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEG  204 (1202)
T KOG0292|consen  125 RKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEG  204 (1202)
T ss_pred             CceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecc
Confidence            99999999999999999999999999999999999999984210                            12346789


Q ss_pred             CCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCee--eEEEecc----CceeeecCCCEEEEEecCCeEEEEecccce
Q 004603          639 HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC--AGVFKVC----NLMPIILKGCFILNSIFNCYLLLHRIFLNL  712 (743)
Q Consensus       639 h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~--v~~~~~~----~~i~~s~~g~~l~sgs~Dg~I~vh~~~v~~  712 (743)
                      |...|+-++|||.-+ +++||+.|..|++|-+..-+.  +.+.++|    +++-|+|.-..|++.++|++|+||+..-+.
T Consensus       205 HDRGVNwaAfhpTlp-liVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt  283 (1202)
T KOG0292|consen  205 HDRGVNWAAFHPTLP-LIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRT  283 (1202)
T ss_pred             cccccceEEecCCcc-eEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEeccccc
Confidence            999999999999866 888999999999999875431  2233333    567799999999999999999999875421


Q ss_pred             -----------EEEEecCCCCEEEEEeCCCeEEEeC
Q 004603          713 -----------LSVSEWCNPDEISTSSWKDSCCSHR  737 (743)
Q Consensus       713 -----------l~v~~~~~~~~laSgs~DG~V~iWd  737 (743)
                                 +.+-...+..-++.+++|+-+.||+
T Consensus       284 ~v~tfrrendRFW~laahP~lNLfAAgHDsGm~VFk  319 (1202)
T KOG0292|consen  284 SVQTFRRENDRFWILAAHPELNLFAAGHDSGMIVFK  319 (1202)
T ss_pred             ceeeeeccCCeEEEEEecCCcceeeeecCCceEEEE
Confidence                       1112222345678888888888875

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.86  E-value=7.5e-22  Score=195.52  Aligned_cols=235  Identities=17%  Similarity=0.178  Sum_probs=191.8

Q ss_pred             cccccCCCCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEe
Q 004603          472 PTLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLI  551 (743)
Q Consensus       472 ~~l~~~~s~~~s~~~fs~dg~~~l~~~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l  551 (743)
                      +..++.+++++.-+.|++            +.+..-||.+++.|++-.+-                   .+.+..-+.+|
T Consensus         7 pl~c~ghtrpvvdl~~s~------------itp~g~flisa~kd~~pmlr-------------------~g~tgdwigtf   55 (334)
T KOG0278|consen    7 PLTCHGHTRPVVDLAFSP------------ITPDGYFLISASKDGKPMLR-------------------NGDTGDWIGTF   55 (334)
T ss_pred             ceEEcCCCcceeEEeccC------------CCCCceEEEEeccCCCchhc-------------------cCCCCCcEEee
Confidence            455667778888888887            34455789999988775544                   45555678999


Q ss_pred             eCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe
Q 004603          552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY  631 (743)
Q Consensus       552 ~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~  631 (743)
                      .+|.+.|.++..+.+..+-|+++.|-+.+|||.-++..+..|. |...|.+++|+.|.++|+||+.++.+||||+..++.
T Consensus        56 eghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~A  134 (334)
T KOG0278|consen   56 EGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKA  134 (334)
T ss_pred             eccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCCC
Confidence            9999999999999999999999999999999999999988885 889999999999999999999999999999999888


Q ss_pred             eEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEecc-----------------------------
Q 004603          632 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVC-----------------------------  682 (743)
Q Consensus       632 ~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~-----------------------------  682 (743)
                      +...+.+|.+.|..+.|+.....+| ++..|++||+||.++++.+.++...                             
T Consensus       135 pp~E~~ghtg~Ir~v~wc~eD~~iL-SSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~gssV~Fwdak  213 (334)
T KOG0278|consen  135 PPKEISGHTGGIRTVLWCHEDKCIL-SSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAYGSSVKFWDAK  213 (334)
T ss_pred             CchhhcCCCCcceeEEEeccCceEE-eeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEecCceeEEeccc
Confidence            8999999999999999998877666 6688999999999999887766421                             


Q ss_pred             --------------CceeeecCCCEEEEEecCCeEEEEec-------------ccceEEEEecCCCCEEEEEeCCCeEEE
Q 004603          683 --------------NLMPIILKGCFILNSIFNCYLLLHRI-------------FLNLLSVSEWCNPDEISTSSWKDSCCS  735 (743)
Q Consensus       683 --------------~~i~~s~~g~~l~sgs~Dg~I~vh~~-------------~v~~l~v~~~~~~~~laSgs~DG~V~i  735 (743)
                                    +...++|+..++++|++|..+...+.             ...+.++.+.+++...++||.||+|++
T Consensus       214 sf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirl  293 (334)
T KOG0278|consen  214 SFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRL  293 (334)
T ss_pred             cccceeeccCccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEE
Confidence                          11234466677888888887776332             123445555666889999999999999


Q ss_pred             eCCC
Q 004603          736 HREL  739 (743)
Q Consensus       736 Wd~~  739 (743)
                      |...
T Consensus       294 WQt~  297 (334)
T KOG0278|consen  294 WQTT  297 (334)
T ss_pred             EEec
Confidence            9653

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.86  E-value=2.4e-21  Score=192.59  Aligned_cols=183  Identities=22%  Similarity=0.266  Sum_probs=157.5

Q ss_pred             CEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECC
Q 004603          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTE  585 (743)
Q Consensus       507 ~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafsp-dg~~LaSgs~Dg~V~IWd~~  585 (743)
                      +.++++|||++||+|+...                   ...+.++.+|...|+...|+| ..++|++++.|+++++||++
T Consensus       118 ~~~ltsSWD~TiKLW~~~r-------------------~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr  178 (311)
T KOG0277|consen  118 RIFLTSSWDGTIKLWDPNR-------------------PNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVR  178 (311)
T ss_pred             eeEEeeccCCceEeecCCC-------------------CcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEec
Confidence            4556669999999994433                   356778999999999999999 78899999999999999998


Q ss_pred             CCeEEEEEcccCCCEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCc
Q 004603          586 SFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE  664 (743)
Q Consensus       586 t~~~i~~l~~H~~~V~~vafsp-~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~  664 (743)
                      .......+..|...|.|+.|+. +...|+||+.|+.||+||+++-+.++..+.+|.-.|..|.|+|....+|++|+.|-+
T Consensus       179 ~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT  258 (311)
T KOG0277|consen  179 SPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMT  258 (311)
T ss_pred             CCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccce
Confidence            7544445899999999999988 577899999999999999999888899999999999999999999899999999999


Q ss_pred             EEEEECCC-CeeeEEEeccCceeee-----cCCCEEEEEecCCeEEEEec
Q 004603          665 IRYWSINN-GSCAGVFKVCNLMPII-----LKGCFILNSIFNCYLLLHRI  708 (743)
Q Consensus       665 IrvWDl~t-g~~v~~~~~~~~i~~s-----~~g~~l~sgs~Dg~I~vh~~  708 (743)
                      +||||... ..++.++..|+.+.+.     .++.++++.+-|..+.||+.
T Consensus       259 ~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  259 VRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             EEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence            99999984 4566667777654332     26789999999999999874

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.86  E-value=6.2e-21  Score=212.18  Aligned_cols=191  Identities=22%  Similarity=0.299  Sum_probs=162.6

Q ss_pred             CCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEE
Q 004603          505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWC  583 (743)
Q Consensus       505 ~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspd-g~~LaSgs~Dg~V~IWd  583 (743)
                      .+.++++||.|++|++|...++               ......+....+|+..|.+|+++.. ..+|+++|.|+++++|+
T Consensus       376 ~g~llat~sKD~svilWr~~~~---------------~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~  440 (775)
T KOG0319|consen  376 SGDLLATGSKDKSVILWRLNNN---------------CSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWD  440 (775)
T ss_pred             cCcEEEEecCCceEEEEEecCC---------------cchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEec
Confidence            3469999999999999966332               2233456667899999999999763 45899999999999999


Q ss_pred             CCCCe-----EE----EEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCc
Q 004603          584 TESFT-----VK----STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED  654 (743)
Q Consensus       584 ~~t~~-----~i----~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~  654 (743)
                      +...+     .+    .+...|...|.||+++|+..+|+|||.|++.+||++.... .+.++.||+..|++|.|+|.. .
T Consensus       441 l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~-l~~vLsGH~RGvw~V~Fs~~d-q  518 (775)
T KOG0319|consen  441 LPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLR-LLGVLSGHTRGVWCVSFSKND-Q  518 (775)
T ss_pred             CCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCce-EEEEeeCCccceEEEEecccc-c
Confidence            87521     11    1335799999999999999999999999999999999654 488999999999999999985 4


Q ss_pred             EEEEEeCCCcEEEEECCCCeeeEEEeccCc----eeeecCCCEEEEEecCCeEEEEecccce
Q 004603          655 LLCSCDNNSEIRYWSINNGSCAGVFKVCNL----MPIILKGCFILNSIFNCYLLLHRIFLNL  712 (743)
Q Consensus       655 lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~~~----i~~s~~g~~l~sgs~Dg~I~vh~~~v~~  712 (743)
                      ++++||.|++|+||.+.+..|+++|.+|++    ..|..+|..|++++.||.+++|+.....
T Consensus       519 ~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~e  580 (775)
T KOG0319|consen  519 LLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNE  580 (775)
T ss_pred             eeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchh
Confidence            888999999999999999999999999976    5688899999999999999999887543

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.86  E-value=2.9e-20  Score=189.79  Aligned_cols=215  Identities=15%  Similarity=0.211  Sum_probs=170.2

Q ss_pred             cCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCC--EEEEEeCCCcEE
Q 004603          503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK--LLATGGHDKKAV  580 (743)
Q Consensus       503 ~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~--~LaSgs~Dg~V~  580 (743)
                      .-..+++++|+.|.+|++|+...                   ......+-.|.+.|++|.|.++..  .|++|++||.|.
T Consensus        50 AVs~~~~aSGssDetI~IYDm~k-------------------~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~  110 (362)
T KOG0294|consen   50 AVSGPYVASGSSDETIHIYDMRK-------------------RKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHII  110 (362)
T ss_pred             EecceeEeccCCCCcEEEEeccc-------------------hhhhcceeccccceEEEEecCCcchhheeeecCCCcEE
Confidence            33458999999999999995533                   356677888999999999998664  899999999999


Q ss_pred             EEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEe
Q 004603          581 LWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD  660 (743)
Q Consensus       581 IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs  660 (743)
                      +|++...+++.++++|++.|+.++.||.+++.++.+.|+.+|.||+-+++.....-..+..  +.|.|+|.|.++++.+.
T Consensus       111 iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~a--t~v~w~~~Gd~F~v~~~  188 (362)
T KOG0294|consen  111 IWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKA--TLVSWSPQGDHFVVSGR  188 (362)
T ss_pred             EEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcc--eeeEEcCCCCEEEEEec
Confidence            9999999999999999999999999999999999999999999999887753333233333  44999999986665544


Q ss_pred             CCCcEEEEECCCCeeeEEEecc--CceeeecCCCEEEEEecCCeEEEEecc--------------cceEEEEecCCCCEE
Q 004603          661 NNSEIRYWSINNGSCAGVFKVC--NLMPIILKGCFILNSIFNCYLLLHRIF--------------LNLLSVSEWCNPDEI  724 (743)
Q Consensus       661 ~Dg~IrvWDl~tg~~v~~~~~~--~~i~~s~~g~~l~sgs~Dg~I~vh~~~--------------v~~l~v~~~~~~~~l  724 (743)
                        ..|-||.+.+......+...  ..+...-++.+|++|++|+.|++++..              ++.+.+-...+..+|
T Consensus       189 --~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~l  266 (362)
T KOG0294|consen  189 --NKIDIYQLDNASVFREIENPKRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYL  266 (362)
T ss_pred             --cEEEEEecccHhHhhhhhccccceeeeecCCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEE
Confidence              46999999877665544433  223344578899999999999996654              444444444446799


Q ss_pred             EEEeCCCeEEEeCCCc
Q 004603          725 STSSWKDSCCSHRELY  740 (743)
Q Consensus       725 aSgs~DG~V~iWd~~~  740 (743)
                      +|+|.||.|++||-+.
T Consensus       267 vTaSSDG~I~vWd~~~  282 (362)
T KOG0294|consen  267 VTASSDGFIKVWDIDM  282 (362)
T ss_pred             EEeccCceEEEEEccc
Confidence            9999999999998654

>PTZ00420 coronin; Provisional

Probab=99.86  E-value=2.5e-19  Score=205.18  Aligned_cols=206  Identities=14%  Similarity=0.177  Sum_probs=155.5

Q ss_pred             CCCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCC
Q 004603          478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK  557 (743)
Q Consensus       478 ~s~~~s~~~fs~dg~~~l~~~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~  557 (743)
                      +...+..+.|+|+.              +.++++|+.|++|++|+...+....           ......+..+.+|...
T Consensus        73 H~~~V~~lafsP~~--------------~~lLASgS~DgtIrIWDi~t~~~~~-----------~~i~~p~~~L~gH~~~  127 (568)
T PTZ00420         73 HTSSILDLQFNPCF--------------SEILASGSEDLTIRVWEIPHNDESV-----------KEIKDPQCILKGHKKK  127 (568)
T ss_pred             CCCCEEEEEEcCCC--------------CCEEEEEeCCCeEEEEECCCCCccc-----------cccccceEEeecCCCc
Confidence            44566666777643              2689999999999999876432100           0001345567899999


Q ss_pred             eEEEEEcCCCCE-EEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEE
Q 004603          558 VESCHFSPDGKL-LATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF  636 (743)
Q Consensus       558 V~siafspdg~~-LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l  636 (743)
                      |.+|+|+|++.. |++|+.|++|+|||+++++.+..+. |...|.+++|+|+|.+|++++.|+.|+|||++++.. +.++
T Consensus       128 V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~-i~tl  205 (568)
T PTZ00420        128 ISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEI-ASSF  205 (568)
T ss_pred             EEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcE-EEEE
Confidence            999999998875 5799999999999999988877775 667899999999999999999999999999998764 7889


Q ss_pred             ecCCCCeEEEE-----EecCCCcEEEEEeCC----CcEEEEECCC-CeeeEEEeccCc----ee-e-ecCCCEEEEEecC
Q 004603          637 TGHSTTVMSLD-----FHPSKEDLLCSCDNN----SEIRYWSINN-GSCAGVFKVCNL----MP-I-ILKGCFILNSIFN  700 (743)
Q Consensus       637 ~~h~~~V~sl~-----fsp~g~~lL~Sgs~D----g~IrvWDl~t-g~~v~~~~~~~~----i~-~-s~~g~~l~sgs~D  700 (743)
                      .+|.+.+.+.+     |++++..++ +++.|    ++|+|||+++ ++++..+.....    ++ + .++|.++++|+.|
T Consensus       206 ~gH~g~~~s~~v~~~~fs~d~~~Il-TtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD  284 (568)
T PTZ00420        206 HIHDGGKNTKNIWIDGLGGDDNYIL-STGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGD  284 (568)
T ss_pred             ecccCCceeEEEEeeeEcCCCCEEE-EEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECC
Confidence            99987654433     447766555 55545    3799999995 566666554322    11 2 3458899999999


Q ss_pred             CeEEEEecccc
Q 004603          701 CYLLLHRIFLN  711 (743)
Q Consensus       701 g~I~vh~~~v~  711 (743)
                      ++|++|+....
T Consensus       285 ~tIr~~e~~~~  295 (568)
T PTZ00420        285 GNCRYYQHSLG  295 (568)
T ss_pred             CeEEEEEccCC
Confidence            99999987544

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.85  E-value=1.7e-21  Score=208.21  Aligned_cols=195  Identities=18%  Similarity=0.284  Sum_probs=168.4

Q ss_pred             eeeeEEEeeCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCC-CeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeE
Q 004603          544 TFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTES-FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTV  621 (743)
Q Consensus       544 ~~~~~~~l~~H~~~V~siafsp-dg~~LaSgs~Dg~V~IWd~~t-~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~V  621 (743)
                      ..+.+.++.+|+..|+++.|.| .+.+|++|+.|+.|+||++.. ++++++|.+|..+|.+++|+.+|..|+|++.|++|
T Consensus       203 Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~l  282 (503)
T KOG0282|consen  203 PKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFL  282 (503)
T ss_pred             cHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceee
Confidence            3456788999999999999999 999999999999999999876 89999999999999999999999999999999999


Q ss_pred             EEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEecc----CceeeecCCCEEEEE
Q 004603          622 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVC----NLMPIILKGCFILNS  697 (743)
Q Consensus       622 rvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~----~~i~~s~~g~~l~sg  697 (743)
                      ++||++++.+ +..|. ....++++.|+|++.++|++|+.|+.|+.||+|+++.+..+..|    ..+.|.+.|.++++.
T Consensus       283 KlwDtETG~~-~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFiss  360 (503)
T KOG0282|consen  283 KLWDTETGQV-LSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISS  360 (503)
T ss_pred             eeeccccceE-EEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeee
Confidence            9999999875 66665 34568999999999889999999999999999999988777654    558899999999999


Q ss_pred             ecCCeEEEEecccce-------------EEEEecCCCCEEEEEeCCCeEEEeCCCc
Q 004603          698 IFNCYLLLHRIFLNL-------------LSVSEWCNPDEISTSSWKDSCCSHRELY  740 (743)
Q Consensus       698 s~Dg~I~vh~~~v~~-------------l~v~~~~~~~~laSgs~DG~V~iWd~~~  740 (743)
                      ++|+.++||+..+.+             -++...+.+.++++-+.|..|.++....
T Consensus       361 SDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~  416 (503)
T KOG0282|consen  361 SDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVP  416 (503)
T ss_pred             ccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEeccc
Confidence            999999999866532             1222233367899999999998886443

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.85  E-value=2e-20  Score=198.95  Aligned_cols=239  Identities=20%  Similarity=0.325  Sum_probs=182.7

Q ss_pred             CCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCcccccc-ccCCCceeeeEEEeeCCCCC
Q 004603          479 ASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSA-EVGKGFTFTEFQLIPASTSK  557 (743)
Q Consensus       479 s~~~s~~~fs~dg~~~l~~~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~H~~~  557 (743)
                      -.++.++.++++.               .++.+++.|++|.-|....+.+.+....+-. -...+...++-.  ++|...
T Consensus       142 ~~s~~~vals~d~---------------~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r--~~h~ke  204 (479)
T KOG0299|consen  142 QLSVTSVALSPDD---------------KRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESR--KGHVKE  204 (479)
T ss_pred             cCcceEEEeeccc---------------cceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCccc--ccccce
Confidence            3455566666655               6889999999999998877654432222210 000222222222  489999


Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEe
Q 004603          558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT  637 (743)
Q Consensus       558 V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~  637 (743)
                      |.|++.++||++||+|+.|..|.|||+++.+.+.+|.+|.+.|.+++|......+++++.|++|++|++..... +.++.
T Consensus       205 il~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~-vetly  283 (479)
T KOG0299|consen  205 ILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSY-VETLY  283 (479)
T ss_pred             eEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHH-HHHHh
Confidence            99999999999999999999999999999999999999999999999998888999999999999999998665 78899


Q ss_pred             cCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEeccC-c--eeeecCCCEEEEEecCCeEEEEecc-----
Q 004603          638 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCN-L--MPIILKGCFILNSIFNCYLLLHRIF-----  709 (743)
Q Consensus       638 ~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~~-~--i~~s~~g~~l~sgs~Dg~I~vh~~~-----  709 (743)
                      +|.+.|.+|+....++ ++..|+.|+++++|++... ..-.|.++. .  ++.-.+...+++|+.||.|.+|...     
T Consensus       284 GHqd~v~~IdaL~reR-~vtVGgrDrT~rlwKi~ee-sqlifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkpl  361 (479)
T KOG0299|consen  284 GHQDGVLGIDALSRER-CVTVGGRDRTVRLWKIPEE-SQLIFRGGEGSIDCVAFINDEHFVSGSDNGSIALWSLLKKKPL  361 (479)
T ss_pred             CCccceeeechhcccc-eEEeccccceeEEEecccc-ceeeeeCCCCCeeeEEEecccceeeccCCceEEEeeecccCce
Confidence            9999999998776644 6767779999999999533 333455443 2  2333567789999999999997642     


Q ss_pred             ---------------------cceEEEEecCCCCEEEEEeCCCeEEEeCCC
Q 004603          710 ---------------------LNLLSVSEWCNPDEISTSSWKDSCCSHREL  739 (743)
Q Consensus       710 ---------------------v~~l~v~~~~~~~~laSgs~DG~V~iWd~~  739 (743)
                                           ++.+++.+.  ..++++|+|+|.|++|...
T Consensus       362 f~~~~AHgv~~~~~~~~~~~Witsla~i~~--sdL~asGS~~G~vrLW~i~  410 (479)
T KOG0299|consen  362 FTSRLAHGVIPELDPVNGNFWITSLAVIPG--SDLLASGSWSGCVRLWKIE  410 (479)
T ss_pred             eEeeccccccCCccccccccceeeeEeccc--CceEEecCCCCceEEEEec
Confidence                                 233444433  5699999999999999653

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.85  E-value=4.3e-20  Score=187.96  Aligned_cols=264  Identities=18%  Similarity=0.253  Sum_probs=201.1

Q ss_pred             cccCCCCCceEEEEecCCCccccc------cCc--cccCCCCEEEEeeCCCcEEEEecCCCC------C-----C-----
Q 004603          474 LQHNGASSKSLLMFGSDGMGSLTS------APN--QLTDMDRFVDDGSLDDNVESFLSPDDA------D-----P-----  529 (743)
Q Consensus       474 l~~~~s~~~s~~~fs~dg~~~l~~------~~~--~l~~~~~~l~sGs~D~~V~iw~s~~~~------~-----~-----  529 (743)
                      ++-.++.+....+|+.+...+|..      +.+  .|+....++.++|-|++..+|......      .     +     
T Consensus       162 i~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e  241 (481)
T KOG0300|consen  162 ICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEE  241 (481)
T ss_pred             ceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhh
Confidence            334456677777888776544322      222  255667899999999999999522110      0     0     


Q ss_pred             -CCccccccc---cCCCce-eeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEE
Q 004603          530 -RDRVGRSAE---VGKGFT-FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVR  604 (743)
Q Consensus       530 -~~~~~~~~~---~~~~~~-~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~va  604 (743)
                       .+.-.+..+   ..++.+ -.++..+.+|.+.|.|+.|-..|..+++++.|.+..+||+++++++..+.||....+.++
T Consensus       242 ~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcs  321 (481)
T KOG0300|consen  242 HSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCS  321 (481)
T ss_pred             cccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccc
Confidence             011111111   112222 246788999999999999999999999999999999999999999999999999999999


Q ss_pred             EcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCe-eeEEEec--
Q 004603          605 FSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVFKV--  681 (743)
Q Consensus       605 fsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~-~v~~~~~--  681 (743)
                      -+|..++++|++.|.+.|+||.+..-..+..|.||...|+++.|..+.+  +++|+.|.+|+|||+++.+ .+.+++.  
T Consensus       322 tHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~--vVSgSDDrTvKvWdLrNMRsplATIRtdS  399 (481)
T KOG0300|consen  322 THPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDR--VVSGSDDRTVKVWDLRNMRSPLATIRTDS  399 (481)
T ss_pred             cCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCc--eeecCCCceEEEeeeccccCcceeeecCC
Confidence            9999999999999999999999976666889999999999999998754  6799999999999999754 4555554  


Q ss_pred             -cCceeeecCCCEEEEEecCCeEEEEecc------------------cceEEEEecCCCCEEEEEeCCCeEEEeCCC
Q 004603          682 -CNLMPIILKGCFILNSIFNCYLLLHRIF------------------LNLLSVSEWCNPDEISTSSWKDSCCSHREL  739 (743)
Q Consensus       682 -~~~i~~s~~g~~l~sgs~Dg~I~vh~~~------------------v~~l~v~~~~~~~~laSgs~DG~V~iWd~~  739 (743)
                       .+.+.++..+..|+...++..|++++..                  +.+.+|....+-.-|++||.|..|.-|+-.
T Consensus       400 ~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in  476 (481)
T KOG0300|consen  400 PANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKIN  476 (481)
T ss_pred             ccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEec
Confidence             3446777777788888888888885543                  345556555555679999999999999753

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.85  E-value=3.4e-20  Score=214.54  Aligned_cols=224  Identities=19%  Similarity=0.279  Sum_probs=176.7

Q ss_pred             CEEEEee--CCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004603          507 RFVDDGS--LDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT  584 (743)
Q Consensus       507 ~~l~sGs--~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~  584 (743)
                      ..+++|+  .|+.+++|....-.       .........-.+.+.....|.+.|+|+.|+|||.+||+|++|+.|.||..
T Consensus        26 ~~~aTgGq~~d~~~~iW~~~~vl-------~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~   98 (942)
T KOG0973|consen   26 VKFATGGQVLDGGIVIWSQDPVL-------DEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWER   98 (942)
T ss_pred             eeEecCCccccccceeecccccc-------chhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEEeee
Confidence            4678999  99999999443221       11111111134567888899999999999999999999999999999986


Q ss_pred             C------------------CCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEE
Q 004603          585 E------------------SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL  646 (743)
Q Consensus       585 ~------------------t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl  646 (743)
                      .                  ..+.+.++.+|...|.+++|+|++.+|++++.|++|.+||.++. .++.++.+|.+.|-.+
T Consensus        99 ~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF-~~~~vl~~H~s~VKGv  177 (942)
T KOG0973|consen   99 AEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTF-ELLKVLRGHQSLVKGV  177 (942)
T ss_pred             cccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccc-eeeeeeecccccccce
Confidence            5                  13467889999999999999999999999999999999999998 5699999999999999


Q ss_pred             EEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEecc----------CceeeecCCCEEEEEec--C--CeEEE-------
Q 004603          647 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVC----------NLMPIILKGCFILNSIF--N--CYLLL-------  705 (743)
Q Consensus       647 ~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~----------~~i~~s~~g~~l~sgs~--D--g~I~v-------  705 (743)
                      .|+|-|. +|++=+.|++|+||.+.+..+.+.+..+          ..+.++|||.||++...  .  .++.|       
T Consensus       178 s~DP~Gk-y~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk  256 (942)
T KOG0973|consen  178 SWDPIGK-YFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWK  256 (942)
T ss_pred             EECCccC-eeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCce
Confidence            9999987 7789999999999998877777766543          33779999999998642  1  12222       


Q ss_pred             -------EecccceEEEEec---CC--------C----CEEEEEeCCCeEEEeCCC
Q 004603          706 -------HRIFLNLLSVSEW---CN--------P----DEISTSSWKDSCCSHREL  739 (743)
Q Consensus       706 -------h~~~v~~l~v~~~---~~--------~----~~laSgs~DG~V~iWd~~  739 (743)
                             |...+.++.+.+.   .+        +    ..+|+||.|++|-||...
T Consensus       257 ~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~  312 (942)
T KOG0973|consen  257 VDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTA  312 (942)
T ss_pred             eeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecC
Confidence                   6666666666442   01        1    278999999999999763

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=4e-19  Score=173.73  Aligned_cols=240  Identities=19%  Similarity=0.204  Sum_probs=175.4

Q ss_pred             CCCCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCC
Q 004603          477 NGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS  556 (743)
Q Consensus       477 ~~s~~~s~~~fs~dg~~~l~~~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~  556 (743)
                      ..+..++.+.|+|.+               .+.+.|+...+.++.-.++-.+.+..    .+..+.......+.-+.|.+
T Consensus        30 ~dsqairav~fhp~g---------------~lyavgsnskt~ric~yp~l~~~r~~----hea~~~pp~v~~kr~khhkg   90 (350)
T KOG0641|consen   30 EDSQAIRAVAFHPAG---------------GLYAVGSNSKTFRICAYPALIDLRHA----HEAAKQPPSVLCKRNKHHKG   90 (350)
T ss_pred             cchhheeeEEecCCC---------------ceEEeccCCceEEEEccccccCcccc----cccccCCCeEEeeeccccCc
Confidence            344566677777766               57899999999999855544322211    11112222344556678999


Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCC--------------------------------------------------
Q 004603          557 KVESCHFSPDGKLLATGGHDKKAVLWCTES--------------------------------------------------  586 (743)
Q Consensus       557 ~V~siafspdg~~LaSgs~Dg~V~IWd~~t--------------------------------------------------  586 (743)
                      .|+|.+|+|+|.+|++|+.|++|++.-...                                                  
T Consensus        91 siyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc  170 (350)
T KOG0641|consen   91 SIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDC  170 (350)
T ss_pred             cEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeec
Confidence            999999999999999999999999873321                                                  


Q ss_pred             --CeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEec-------CCCCeEEEEEecCCCcEEE
Q 004603          587 --FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG-------HSTTVMSLDFHPSKEDLLC  657 (743)
Q Consensus       587 --~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~-------h~~~V~sl~fsp~g~~lL~  657 (743)
                        +.....+.+|++.|.++ ++-++-.|++|+.|.+||+||++-+. |+.++..       ..+.|.+++..|.|+ +|+
T Consensus       171 ~~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~-~v~~l~~~~~~~glessavaav~vdpsgr-ll~  247 (350)
T KOG0641|consen  171 GRGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNS-CVNTLDNDFHDGGLESSAVAAVAVDPSGR-LLA  247 (350)
T ss_pred             CCCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccc-eeeeccCcccCCCcccceeEEEEECCCcc-eee
Confidence              11122334677777665 23356789999999999999999865 4665531       236799999999986 889


Q ss_pred             EEeCCCcEEEEECCCCeeeEEEeccC----ceeeecCCCEEEEEecCCeEEEEeccc----------------ceEEEEe
Q 004603          658 SCDNNSEIRYWSINNGSCAGVFKVCN----LMPIILKGCFILNSIFNCYLLLHRIFL----------------NLLSVSE  717 (743)
Q Consensus       658 Sgs~Dg~IrvWDl~tg~~v~~~~~~~----~i~~s~~g~~l~sgs~Dg~I~vh~~~v----------------~~l~v~~  717 (743)
                      +|-.|....+||++.++.+..|..|+    ++.|+|..-|+++++.|..|++.+...                +++...+
T Consensus       248 sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rw  327 (350)
T KOG0641|consen  248 SGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRW  327 (350)
T ss_pred             eccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEe
Confidence            99999999999999999999998774    477999999999999999999943321                2222233


Q ss_pred             cCCCCEEEEEeCCCeEEEeCC
Q 004603          718 WCNPDEISTSSWKDSCCSHRE  738 (743)
Q Consensus       718 ~~~~~~laSgs~DG~V~iWd~  738 (743)
                      .+..-.+++.+.|.++.+|--
T Consensus       328 h~~d~sfisssadkt~tlwa~  348 (350)
T KOG0641|consen  328 HPQDFSFISSSADKTATLWAL  348 (350)
T ss_pred             cCccceeeeccCcceEEEecc
Confidence            333557889999999999963

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.84  E-value=1.5e-19  Score=190.78  Aligned_cols=243  Identities=14%  Similarity=0.153  Sum_probs=187.1

Q ss_pred             cccCCCCCceEEEEecCCCcc--------ccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCcee
Q 004603          474 LQHNGASSKSLLMFGSDGMGS--------LTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTF  545 (743)
Q Consensus       474 l~~~~s~~~s~~~fs~dg~~~--------l~~~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~  545 (743)
                      ....|..++..+.|.-.....        .......+++....+.+++.|..|++|.....                   
T Consensus       233 ~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~-------------------  293 (506)
T KOG0289|consen  233 KILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLS-------------------  293 (506)
T ss_pred             cceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccc-------------------
Confidence            444556666666665443311        11112223445578899999999999955443                   


Q ss_pred             eeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcc--cCCCEEEEEEcCCCCEEEEEeCCCeEEE
Q 004603          546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE--HTQWITDVRFSPSLSRLATSSADRTVRV  623 (743)
Q Consensus       546 ~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~--H~~~V~~vafsp~~~~LaSgs~Dg~Vrv  623 (743)
                      .+...+..|..+|+.+..+|.|.||++++.|++..+.|++++..+.....  ..-.+++.+|||||.+|.+|..|+.|+|
T Consensus       294 s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vki  373 (506)
T KOG0289|consen  294 SEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKI  373 (506)
T ss_pred             cCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEE
Confidence            24456678999999999999999999999999999999999988766543  2245899999999999999999999999


Q ss_pred             EECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEecc-----CceeeecCCCEEEEEe
Q 004603          624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVC-----NLMPIILKGCFILNSI  698 (743)
Q Consensus       624 WDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~-----~~i~~s~~g~~l~sgs  698 (743)
                      ||+..... +..|.+|+++|.+|.|+.+| ++|+++..|+.|++||+|..+...++...     ..+.|...|.|++.++
T Consensus       374 wdlks~~~-~a~Fpght~~vk~i~FsENG-Y~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g  451 (506)
T KOG0289|consen  374 WDLKSQTN-VAKFPGHTGPVKAISFSENG-YWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAG  451 (506)
T ss_pred             EEcCCccc-cccCCCCCCceeEEEeccCc-eEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeec
Confidence            99998774 88999999999999999887 57778888999999999998887777643     4578999999999998


Q ss_pred             cCCeEEEEe-------c-------ccceEEEEecCCCCEEEEEeCCCeEEEeC
Q 004603          699 FNCYLLLHR-------I-------FLNLLSVSEWCNPDEISTSSWKDSCCSHR  737 (743)
Q Consensus       699 ~Dg~I~vh~-------~-------~v~~l~v~~~~~~~~laSgs~DG~V~iWd  737 (743)
                      .|-.|.+..       .       ....-.+.+.....+++++|.|..++++.
T Consensus       452 ~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a  504 (506)
T KOG0289|consen  452 SDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYA  504 (506)
T ss_pred             ceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEee
Confidence            887777633       1       11122233333467999999999988874

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.84  E-value=5.8e-20  Score=201.91  Aligned_cols=249  Identities=16%  Similarity=0.207  Sum_probs=197.2

Q ss_pred             cccCCCCCceEEEEecCCCccccccC--------------ccccCCCCEEEEeeCCCcEEEEecCCCCCCCCcccccccc
Q 004603          474 LQHNGASSKSLLMFGSDGMGSLTSAP--------------NQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEV  539 (743)
Q Consensus       474 l~~~~s~~~s~~~fs~dg~~~l~~~~--------------~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~  539 (743)
                      ..+.|+++..+..|+.+......+..              ..+..+++-+.++|.|-+|++|....+.            
T Consensus        39 yLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~------------  106 (735)
T KOG0308|consen   39 YLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDN------------  106 (735)
T ss_pred             eEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCc------------
Confidence            45678899999999877654322221              1134556789999999999999665541            


Q ss_pred             CCCceeeeEEEeeCCCCCeEEEEE-cCCCCEEEEEeCCCcEEEEECCCCe--EEE--------EEc-ccCCCEEEEEEcC
Q 004603          540 GKGFTFTEFQLIPASTSKVESCHF-SPDGKLLATGGHDKKAVLWCTESFT--VKS--------TLE-EHTQWITDVRFSP  607 (743)
Q Consensus       540 ~~~~~~~~~~~l~~H~~~V~siaf-spdg~~LaSgs~Dg~V~IWd~~t~~--~i~--------~l~-~H~~~V~~vafsp  607 (743)
                           ..++.++..|++.|.|+++ .++..++|+||-|+.|+|||+.++.  .+.        .+. ||...|++++.++
T Consensus       107 -----~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~  181 (735)
T KOG0308|consen  107 -----TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQ  181 (735)
T ss_pred             -----chhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCC
Confidence                 2456778899999999999 7788999999999999999998762  222        223 8899999999999


Q ss_pred             CCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEeccCcee-
Q 004603          608 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNLMP-  686 (743)
Q Consensus       608 ~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~~~i~-  686 (743)
                      .+..|++|+..+.|++||.++.+. +..+.||+..|.+|..+++|..+| +++.||+||+||+...+|+.++..|.... 
T Consensus       182 t~t~ivsGgtek~lr~wDprt~~k-imkLrGHTdNVr~ll~~dDGt~~l-s~sSDgtIrlWdLgqQrCl~T~~vH~e~VW  259 (735)
T KOG0308|consen  182 TGTIIVSGGTEKDLRLWDPRTCKK-IMKLRGHTDNVRVLLVNDDGTRLL-SASSDGTIRLWDLGQQRCLATYIVHKEGVW  259 (735)
T ss_pred             cceEEEecCcccceEEeccccccc-eeeeeccccceEEEEEcCCCCeEe-ecCCCceEEeeeccccceeeeEEeccCceE
Confidence            999999999999999999999776 788889999999999999998666 88889999999999999999999886543 


Q ss_pred             ---eecCCCEEEEEecCCeEEEEecccc---eEEEEecC---------CCCEEEEEeCCCeEEEeCCCcc
Q 004603          687 ---IILKGCFILNSIFNCYLLLHRIFLN---LLSVSEWC---------NPDEISTSSWKDSCCSHRELYL  741 (743)
Q Consensus       687 ---~s~~g~~l~sgs~Dg~I~vh~~~v~---~l~v~~~~---------~~~~laSgs~DG~V~iWd~~~~  741 (743)
                         .+++-.++++|+.|+.|..-+....   .+.+....         ...-+.++.+|+.|+-|.....
T Consensus       260 aL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~  329 (735)
T KOG0308|consen  260 ALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPD  329 (735)
T ss_pred             EEeeCCCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCCccc
Confidence               4467788999999999998655542   11111111         1234588999999999987654

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.84  E-value=9.4e-20  Score=179.46  Aligned_cols=192  Identities=19%  Similarity=0.266  Sum_probs=166.5

Q ss_pred             eeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 004603          546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD  625 (743)
Q Consensus       546 ~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWD  625 (743)
                      +..+.+..|.++|..+.|+-||++.++++.|++|++|+...+.+++++.+|...|.+++.+.|...|++|+.|+.|.+||
T Consensus         8 kr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwD   87 (307)
T KOG0316|consen    8 KRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWD   87 (307)
T ss_pred             hhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEE
Confidence            45677889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCC--eeeEEEecc--CceeeecCCCEEEEEecCC
Q 004603          626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG--SCAGVFKVC--NLMPIILKGCFILNSIFNC  701 (743)
Q Consensus       626 l~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg--~~v~~~~~~--~~i~~s~~g~~l~sgs~Dg  701 (743)
                      +.+++. ++.|.+|...|+.+.|+.+.. ++++|+.|.+||+||.++.  +++..+...  ....+...+..|++|+.||
T Consensus        88 V~TGkv-~Rr~rgH~aqVNtV~fNeesS-Vv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~heIvaGS~DG  165 (307)
T KOG0316|consen   88 VNTGKV-DRRFRGHLAQVNTVRFNEESS-VVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEIVAGSVDG  165 (307)
T ss_pred             cccCee-eeecccccceeeEEEecCcce-EEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecccEEEeeccCC
Confidence            999886 899999999999999998754 8889999999999999864  566666543  2345667888999999999


Q ss_pred             eEEEEecccc----------eEEEEecCCCCEEEEEeCCCeEEEeCCC
Q 004603          702 YLLLHRIFLN----------LLSVSEWCNPDEISTSSWKDSCCSHREL  739 (743)
Q Consensus       702 ~I~vh~~~v~----------~l~v~~~~~~~~laSgs~DG~V~iWd~~  739 (743)
                      +++.+++...          ..++++..++...+.++-|+++++-|..
T Consensus       166 tvRtydiR~G~l~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~  213 (307)
T KOG0316|consen  166 TVRTYDIRKGTLSSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKE  213 (307)
T ss_pred             cEEEEEeecceeehhhcCCcceeEEecCCCCEEEEeeccceeeecccc
Confidence            9999776532          2334455558899999999999998764

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.84  E-value=1.3e-19  Score=200.57  Aligned_cols=212  Identities=19%  Similarity=0.254  Sum_probs=176.2

Q ss_pred             CCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeC-CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004603          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPA-STSKVESCHFSPDGKLLATGGHDKKAVLWCT  584 (743)
Q Consensus       506 ~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-H~~~V~siafspdg~~LaSgs~Dg~V~IWd~  584 (743)
                      +.+|+.|..++.|.+|+...                   .+.+..+.+ |...|-|++|+  +..+.+|+.|+.|.++|+
T Consensus       229 G~~LavG~~~g~v~iwD~~~-------------------~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dv  287 (484)
T KOG0305|consen  229 GSHLAVGTSDGTVQIWDVKE-------------------QKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDV  287 (484)
T ss_pred             CCEEEEeecCCeEEEEehhh-------------------ccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEE
Confidence            37999999999999995433                   345566666 99999999997  778999999999999999


Q ss_pred             CCCeEEEE-EcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEe--C
Q 004603          585 ESFTVKST-LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD--N  661 (743)
Q Consensus       585 ~t~~~i~~-l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs--~  661 (743)
                      +..+.... +.+|...|..+.|++++.++|+|+.|..|.|||.... .++..+..|...|.+++|+|-...+||+|+  .
T Consensus       288 R~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~-~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~  366 (484)
T KOG0305|consen  288 RISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSP-EPKFTFTEHTAAVKALAWCPWQSGLLATGGGSA  366 (484)
T ss_pred             ecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCc-cccEEEeccceeeeEeeeCCCccCceEEcCCCc
Confidence            98765544 8899999999999999999999999999999999654 457888999999999999999888999864  7


Q ss_pred             CCcEEEEECCCCeeeEEEeccC---ceeeecCCCEEEE--EecCCeEEEEecc------------cceEEEEecCCCCEE
Q 004603          662 NSEIRYWSINNGSCAGVFKVCN---LMPIILKGCFILN--SIFNCYLLLHRIF------------LNLLSVSEWCNPDEI  724 (743)
Q Consensus       662 Dg~IrvWDl~tg~~v~~~~~~~---~i~~s~~g~~l~s--gs~Dg~I~vh~~~------------v~~l~v~~~~~~~~l  724 (743)
                      |++|++||..+++++..+....   .+.+++..+-|++  |..++.|.||+..            ..++.+...+++..|
T Consensus       367 D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i  446 (484)
T KOG0305|consen  367 DRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETI  446 (484)
T ss_pred             ccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEE
Confidence            8999999999999988887654   3567887766665  4556677886542            235555566668899


Q ss_pred             EEEeCCCeEEEeCCC
Q 004603          725 STSSWKDSCCSHREL  739 (743)
Q Consensus       725 aSgs~DG~V~iWd~~  739 (743)
                      ++|+.|.++++|+..
T Consensus       447 ~t~a~DETlrfw~~f  461 (484)
T KOG0305|consen  447 VTGAADETLRFWNLF  461 (484)
T ss_pred             EEecccCcEEecccc
Confidence            999999999999853

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.84  E-value=1.4e-20  Score=197.71  Aligned_cols=210  Identities=20%  Similarity=0.264  Sum_probs=175.9

Q ss_pred             CEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004603          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES  586 (743)
Q Consensus       507 ~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t  586 (743)
                      ..+++|+.|..|++|...                 +.....+.++.+..+.|+++.|.++++.+++++.|+.+++|+++.
T Consensus       188 dtlatgg~Dr~Ik~W~v~-----------------~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~  250 (459)
T KOG0288|consen  188 DTLATGGSDRIIKLWNVL-----------------GEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDS  250 (459)
T ss_pred             chhhhcchhhhhhhhhcc-----------------cchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccc
Confidence            468999999999999442                 223456778888999999999999999999999999999999999


Q ss_pred             CeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEE
Q 004603          587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR  666 (743)
Q Consensus       587 ~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~Ir  666 (743)
                      .....++.||++.|+++.|.-....+++|+.|.+|++||+.... |.+++- ..+.+.+|+..+   ..+++|..|++||
T Consensus       251 ~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~-C~kt~l-~~S~cnDI~~~~---~~~~SgH~DkkvR  325 (459)
T KOG0288|consen  251 LRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAY-CSKTVL-PGSQCNDIVCSI---SDVISGHFDKKVR  325 (459)
T ss_pred             hhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhh-eecccc-ccccccceEecc---eeeeecccccceE
Confidence            99999999999999999998776669999999999999999844 455544 235567777663   3677999999999


Q ss_pred             EEECCCCeeeEEEecc---CceeeecCCCEEEEEecCCeEEEEecccceEE----------------EEecCCCCEEEEE
Q 004603          667 YWSINNGSCAGVFKVC---NLMPIILKGCFILNSIFNCYLLLHRIFLNLLS----------------VSEWCNPDEISTS  727 (743)
Q Consensus       667 vWDl~tg~~v~~~~~~---~~i~~s~~g~~l~sgs~Dg~I~vh~~~v~~l~----------------v~~~~~~~~laSg  727 (743)
                      +||+++..++.+...+   +.+.++++|+.|.+.+.|.++.+++.....+.                +.+.+++.|+++|
T Consensus       326 fwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAG  405 (459)
T KOG0288|consen  326 FWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAG  405 (459)
T ss_pred             EEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeec
Confidence            9999999999888865   55778899999999999999999877654322                2344558899999


Q ss_pred             eCCCeEEEeCC
Q 004603          728 SWKDSCCSHRE  738 (743)
Q Consensus       728 s~DG~V~iWd~  738 (743)
                      |.||.|+||+.
T Consensus       406 S~dgsv~iW~v  416 (459)
T KOG0288|consen  406 SADGSVYIWSV  416 (459)
T ss_pred             cCCCcEEEEEc
Confidence            99999999974

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.83  E-value=3.3e-20  Score=203.77  Aligned_cols=219  Identities=12%  Similarity=0.206  Sum_probs=180.8

Q ss_pred             CCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004603          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE  585 (743)
Q Consensus       506 ~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~  585 (743)
                      ++++.+|+.|+.|++|......             ..........++.|++.|.+++...+++.|+++|.|-+|++|+..
T Consensus        37 ~ryLfTgGRDg~i~~W~~~~d~-------------~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~  103 (735)
T KOG0308|consen   37 GRYLFTGGRDGIIRLWSVTQDS-------------NEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAH  103 (735)
T ss_pred             CceEEecCCCceEEEecccccc-------------CCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecc
Confidence            5799999999999999665542             111122467788999999999999999999999999999999998


Q ss_pred             CC--eEEEEEcccCCCEEEEEE-cCCCCEEEEEeCCCeEEEEECCCCCe---------eEEEEe-cCCCCeEEEEEecCC
Q 004603          586 SF--TVKSTLEEHTQWITDVRF-SPSLSRLATSSADRTVRVWDTENPDY---------SLRTFT-GHSTTVMSLDFHPSK  652 (743)
Q Consensus       586 t~--~~i~~l~~H~~~V~~vaf-sp~~~~LaSgs~Dg~VrvWDl~~~~~---------~l~~l~-~h~~~V~sl~fsp~g  652 (743)
                      ..  -+..++..|++.|.|+++ .++..++|||+.|+.|.+||+.++..         ....+. |+...|++++.++.|
T Consensus       104 ~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~  183 (735)
T KOG0308|consen  104 KDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTG  183 (735)
T ss_pred             cCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcc
Confidence            76  577889999999999999 77888999999999999999987632         122333 888999999999998


Q ss_pred             CcEEEEEeCCCcEEEEECCCCeeeEEEeccCc----eeeecCCCEEEEEecCCeEEEEeccc------------ceEEEE
Q 004603          653 EDLLCSCDNNSEIRYWSINNGSCAGVFKVCNL----MPIILKGCFILNSIFNCYLLLHRIFL------------NLLSVS  716 (743)
Q Consensus       653 ~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~~~----i~~s~~g~~l~sgs~Dg~I~vh~~~v------------~~l~v~  716 (743)
                       .++++|+..+.|++||.++.+.+..+.+|+.    +.++.||..+++++.||+|++|+..-            .+.++.
T Consensus       184 -t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~  262 (735)
T KOG0308|consen  184 -TIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQ  262 (735)
T ss_pred             -eEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEe
Confidence             5888999999999999999999999999864    66889999999999999999987642            122222


Q ss_pred             ecCCCCEEEEEeCCCeEEEeCC
Q 004603          717 EWCNPDEISTSSWKDSCCSHRE  738 (743)
Q Consensus       717 ~~~~~~~laSgs~DG~V~iWd~  738 (743)
                      ....-..+++|+.||.|+.-|-
T Consensus       263 ~~~sf~~vYsG~rd~~i~~Tdl  284 (735)
T KOG0308|consen  263 SSPSFTHVYSGGRDGNIYRTDL  284 (735)
T ss_pred             eCCCcceEEecCCCCcEEeccc
Confidence            2333568999999999887654

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.83  E-value=2.3e-19  Score=179.20  Aligned_cols=192  Identities=16%  Similarity=0.338  Sum_probs=160.8

Q ss_pred             CCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeE
Q 004603          480 SSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVE  559 (743)
Q Consensus       480 ~~~s~~~fs~dg~~~l~~~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~  559 (743)
                      ..+..+.|..+|               ..+++|+.|+++.+|.....                 .+......++|++.|.
T Consensus        21 ~~v~Sv~wn~~g---------------~~lasgs~dktv~v~n~e~~-----------------r~~~~~~~~gh~~svd   68 (313)
T KOG1407|consen   21 QKVHSVAWNCDG---------------TKLASGSFDKTVSVWNLERD-----------------RFRKELVYRGHTDSVD   68 (313)
T ss_pred             hcceEEEEcccC---------------ceeeecccCCceEEEEecch-----------------hhhhhhcccCCCcchh
Confidence            356678898888               47899999999999965443                 1122234578999999


Q ss_pred             EEEEcC-CCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe-------
Q 004603          560 SCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY-------  631 (743)
Q Consensus       560 siafsp-dg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~-------  631 (743)
                      .++|+| ...+|++++.|++|++||++.+++...+....+.| -+.|+|+|.+++.++.|..|.+.|+++.+.       
T Consensus        69 ql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~  147 (313)
T KOG1407|consen   69 QLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFK  147 (313)
T ss_pred             hheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhccc
Confidence            999998 66799999999999999999999998887554444 577999999999999999999999875321       


Q ss_pred             ---------------------------------eEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEE
Q 004603          632 ---------------------------------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV  678 (743)
Q Consensus       632 ---------------------------------~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~  678 (743)
                                                       ++.++..|...+.||.|+|+|+ +|++|+.|..|.+||+...-|++.
T Consensus       148 ~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~Gr-yfA~GsADAlvSLWD~~ELiC~R~  226 (313)
T KOG1407|consen  148 FEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGR-YFATGSADALVSLWDVDELICERC  226 (313)
T ss_pred             ceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCc-eEeeccccceeeccChhHhhhhee
Confidence                                             2455678999999999999987 777999999999999999999988


Q ss_pred             Eecc----CceeeecCCCEEEEEecCCeEEE
Q 004603          679 FKVC----NLMPIILKGCFILNSIFNCYLLL  705 (743)
Q Consensus       679 ~~~~----~~i~~s~~g~~l~sgs~Dg~I~v  705 (743)
                      +..+    ..+.|+.+|.+|+++++|..|-|
T Consensus       227 isRldwpVRTlSFS~dg~~lASaSEDh~IDI  257 (313)
T KOG1407|consen  227 ISRLDWPVRTLSFSHDGRMLASASEDHFIDI  257 (313)
T ss_pred             eccccCceEEEEeccCcceeeccCccceEEe
Confidence            8754    56889999999999999999887

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.83  E-value=8.8e-20  Score=193.41  Aligned_cols=236  Identities=17%  Similarity=0.180  Sum_probs=177.7

Q ss_pred             cCCCCEEEEeeCCCcEEEEecCC--CCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcC-CCCEEEEEeCCCcE
Q 004603          503 TDMDRFVDDGSLDDNVESFLSPD--DADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKA  579 (743)
Q Consensus       503 ~~~~~~l~sGs~D~~V~iw~s~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafsp-dg~~LaSgs~Dg~V  579 (743)
                      ....++++.|++|..|.+|+..-  ...+....+......+....+.-..-.+|++.|.+++|+. ..+.||+||.|++|
T Consensus       189 ~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV  268 (463)
T KOG0270|consen  189 GGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTV  268 (463)
T ss_pred             CCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceE
Confidence            34468999999999999995532  1112222222211111111122233457999999999987 45689999999999


Q ss_pred             EEEECCCCeEEEEEcccCCCEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEE
Q 004603          580 VLWCTESFTVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS  658 (743)
Q Consensus       580 ~IWd~~t~~~i~~l~~H~~~V~~vafsp~-~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~S  658 (743)
                      ++||+.++++..++..|.+.|.++.|+|. ..+|++|+.|++|++.|.|.....-..++ -.+.|-.++|+|...+.+++
T Consensus       269 ~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk-~~g~VEkv~w~~~se~~f~~  347 (463)
T KOG0270|consen  269 KLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK-FDGEVEKVAWDPHSENSFFV  347 (463)
T ss_pred             EEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE-eccceEEEEecCCCceeEEE
Confidence            99999999999999999999999999994 77899999999999999996443222232 45779999999999989999


Q ss_pred             EeCCCcEEEEECCCC-eeeEEEeccCc----eeeec-CCCEEEEEecCCeEEEEecccceE--------------EEEec
Q 004603          659 CDNNSEIRYWSINNG-SCAGVFKVCNL----MPIIL-KGCFILNSIFNCYLLLHRIFLNLL--------------SVSEW  718 (743)
Q Consensus       659 gs~Dg~IrvWDl~tg-~~v~~~~~~~~----i~~s~-~g~~l~sgs~Dg~I~vh~~~v~~l--------------~v~~~  718 (743)
                      +..||+|+.+|+|.. +++.+++.|..    ++++. ...++++++.|++|++|+..+..-              ++...
T Consensus       348 ~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~  427 (463)
T KOG0270|consen  348 STDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALD  427 (463)
T ss_pred             ecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccC
Confidence            999999999999975 89999998843    44443 456788999999999998765321              11211


Q ss_pred             CC-CCEEEEEeCCCeEEEeCCC
Q 004603          719 CN-PDEISTSSWKDSCCSHREL  739 (743)
Q Consensus       719 ~~-~~~laSgs~DG~V~iWd~~  739 (743)
                      .+ ...++.||..+.++|||..
T Consensus       428 ~~~a~~la~GG~k~~~~vwd~~  449 (463)
T KOG0270|consen  428 PDVAFTLAFGGEKAVLRVWDIF  449 (463)
T ss_pred             CCcceEEEecCccceEEEeecc
Confidence            11 4689999999999999864

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.83  E-value=2.7e-19  Score=199.12  Aligned_cols=234  Identities=22%  Similarity=0.299  Sum_probs=183.2

Q ss_pred             CCceEEEEecCCCccccc------cCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeC
Q 004603          480 SSKSLLMFGSDGMGSLTS------APNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPA  553 (743)
Q Consensus       480 ~~~s~~~fs~dg~~~l~~------~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  553 (743)
                      ...++..|+.+...++..      ....+-+-+++++.|...|.+.+|+....                   ..+.++++
T Consensus       392 a~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~-------------------~l~Eti~A  452 (888)
T KOG0306|consen  392 AGESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASA-------------------SLVETIRA  452 (888)
T ss_pred             CCCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehh-------------------hhhhhhhc
Confidence            345566677664422111      11224455677777777777777744322                   34556779


Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC-----CeE--E------EEEcccCCCEEEEEEcCCCCEEEEEeCCCe
Q 004603          554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTES-----FTV--K------STLEEHTQWITDVRFSPSLSRLATSSADRT  620 (743)
Q Consensus       554 H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t-----~~~--i------~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~  620 (743)
                      |.+.|.+++.+||++.++|||.|++|++||..-     +..  +      +++ .-+..|.|++++||+++|+.+--|.+
T Consensus       453 HdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtL-el~ddvL~v~~Spdgk~LaVsLLdnT  531 (888)
T KOG0306|consen  453 HDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTL-ELEDDVLCVSVSPDGKLLAVSLLDNT  531 (888)
T ss_pred             cccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEE-eccccEEEEEEcCCCcEEEEEeccCe
Confidence            999999999999999999999999999999641     111  1      222 23567999999999999999999999


Q ss_pred             EEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEeccC----ceeeecCCCEEEE
Q 004603          621 VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCN----LMPIILKGCFILN  696 (743)
Q Consensus       621 VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~~----~i~~s~~g~~l~s  696 (743)
                      |+||-+++.+. ...+.||.-+|.|++.+||+. ++++||.|..|+||-+.-|.|-+++.+|.    .+.|.|..-.+++
T Consensus       532 VkVyflDtlKF-flsLYGHkLPV~smDIS~DSk-livTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt  609 (888)
T KOG0306|consen  532 VKVYFLDTLKF-FLSLYGHKLPVLSMDISPDSK-LIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFT  609 (888)
T ss_pred             EEEEEecceee-eeeecccccceeEEeccCCcC-eEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEE
Confidence            99999998665 667889999999999999976 88899999999999999999999998873    3668899999999


Q ss_pred             EecCCeEEEEecc--------------cceEEEEecCCCCEEEEEeCCCeEEEeC
Q 004603          697 SIFNCYLLLHRIF--------------LNLLSVSEWCNPDEISTSSWKDSCCSHR  737 (743)
Q Consensus       697 gs~Dg~I~vh~~~--------------v~~l~v~~~~~~~~laSgs~DG~V~iWd  737 (743)
                      ++.|+.|+-|+..              +.++++.+  ++++++|+|+|..|++|-
T Consensus       610 ~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~--~G~~vvs~shD~sIRlwE  662 (888)
T KOG0306|consen  610 CGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSP--NGSFVVSSSHDKSIRLWE  662 (888)
T ss_pred             ecCcceEEeechhhhhhheeeccchheeeeeEEcC--CCCeEEeccCCceeEeee
Confidence            9999999998542              34444444  488999999999999993

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.83  E-value=7.2e-21  Score=210.95  Aligned_cols=184  Identities=20%  Similarity=0.324  Sum_probs=164.7

Q ss_pred             CCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004603          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE  585 (743)
Q Consensus       506 ~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~  585 (743)
                      .+++++|++|..+.+|.....                   ..+..+.+|.++|.||.|+++..+|++|+.||+|++||++
T Consensus        40 ~r~~~~Gg~~~k~~L~~i~kp-------------------~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDle  100 (825)
T KOG0267|consen   40 SRSLVTGGEDEKVNLWAIGKP-------------------NAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLE  100 (825)
T ss_pred             ceeeccCCCceeeccccccCC-------------------chhheeeccCCcceeeecCcchhhhcccccCCceeeeehh
Confidence            488999999999999933222                   2333589999999999999999999999999999999999


Q ss_pred             CCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcE
Q 004603          586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI  665 (743)
Q Consensus       586 t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~I  665 (743)
                      ..+.++++.+|...+.+|.|+|-+.++++|+.|+.+++||++... |.+.+.+|...|..+.|.|+|. +++++++|.+|
T Consensus       101 eAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~G-c~~~~~s~~~vv~~l~lsP~Gr-~v~~g~ed~tv  178 (825)
T KOG0267|consen  101 EAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKG-CSHTYKSHTRVVDVLRLSPDGR-WVASGGEDNTV  178 (825)
T ss_pred             hhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccC-ceeeecCCcceeEEEeecCCCc-eeeccCCccee
Confidence            999999999999999999999999999999999999999999755 5899999999999999999987 66789999999


Q ss_pred             EEEECCCCeeeEEEeccCc----eeeecCCCEEEEEecCCeEEEEeccc
Q 004603          666 RYWSINNGSCAGVFKVCNL----MPIILKGCFILNSIFNCYLLLHRIFL  710 (743)
Q Consensus       666 rvWDl~tg~~v~~~~~~~~----i~~s~~g~~l~sgs~Dg~I~vh~~~v  710 (743)
                      +|||+..|+....|+.|..    +.++|....+..|+.|+++++|+...
T Consensus       179 ki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dlet  227 (825)
T KOG0267|consen  179 KIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLET  227 (825)
T ss_pred             eeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccce
Confidence            9999999999999997654    56778888899999999999998873

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.82  E-value=1.3e-19  Score=194.13  Aligned_cols=221  Identities=19%  Similarity=0.265  Sum_probs=175.3

Q ss_pred             CCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeE
Q 004603          480 SSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVE  559 (743)
Q Consensus       480 ~~~s~~~fs~dg~~~l~~~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~  559 (743)
                      ..++.+.|+|...             .++.+++|.  .+.+|...                   +....+++....+.|+
T Consensus        27 ~~vssl~fsp~~P-------------~d~aVt~S~--rvqly~~~-------------------~~~~~k~~srFk~~v~   72 (487)
T KOG0310|consen   27 NSVSSLCFSPKHP-------------YDFAVTSSV--RVQLYSSV-------------------TRSVRKTFSRFKDVVY   72 (487)
T ss_pred             CcceeEecCCCCC-------------CceEEeccc--EEEEEecc-------------------hhhhhhhHHhhcccee
Confidence            4666778887443             256666664  45666221                   1223333444556799


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCeeEEEEec
Q 004603          560 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDYSLRTFTG  638 (743)
Q Consensus       560 siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~-~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~  638 (743)
                      +++|..||++||+|...|.|+|||+.+...++.+.+|+.+|..+.|+|. +..|++|++|+.+++||+.+... ...+.+
T Consensus        73 s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v-~~~l~~  151 (487)
T KOG0310|consen   73 SVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV-QAELSG  151 (487)
T ss_pred             EEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEE-EEEecC
Confidence            9999999999999999999999997776678889999999999999995 66788999999999999998664 668999


Q ss_pred             CCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCC-eeeEEEecc---CceeeecCCCEEEEEecCCeEEEEecc-----
Q 004603          639 HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFKVC---NLMPIILKGCFILNSIFNCYLLLHRIF-----  709 (743)
Q Consensus       639 h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg-~~v~~~~~~---~~i~~s~~g~~l~sgs~Dg~I~vh~~~-----  709 (743)
                      |++.|.|.+|+|-.+++++||+.||+||+||++.. ..+.++.+.   ..+.+.|.|..|++++.+ .|++||..     
T Consensus       152 htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgGn-~vkVWDl~~G~ql  230 (487)
T KOG0310|consen  152 HTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGGN-SVKVWDLTTGGQL  230 (487)
T ss_pred             CcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCCC-eEEEEEecCCcee
Confidence            99999999999999999999999999999999987 666667654   446778898998888755 68887754     


Q ss_pred             ----------cceEEEEecCCCCEEEEEeCCCeEEEeCC
Q 004603          710 ----------LNLLSVSEWCNPDEISTSSWKDSCCSHRE  738 (743)
Q Consensus       710 ----------v~~l~v~~~~~~~~laSgs~DG~V~iWd~  738 (743)
                                ++++.+..  ++..|+|+|-||.|++||.
T Consensus       231 l~~~~~H~KtVTcL~l~s--~~~rLlS~sLD~~VKVfd~  267 (487)
T KOG0310|consen  231 LTSMFNHNKTVTCLRLAS--DSTRLLSGSLDRHVKVFDT  267 (487)
T ss_pred             hhhhhcccceEEEEEeec--CCceEeecccccceEEEEc
Confidence                      34454444  4789999999999999993

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.82  E-value=3.9e-19  Score=176.10  Aligned_cols=219  Identities=16%  Similarity=0.152  Sum_probs=171.4

Q ss_pred             CCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcC--CCCEEEEEeCCCcEEEEE
Q 004603          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP--DGKLLATGGHDKKAVLWC  583 (743)
Q Consensus       506 ~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafsp--dg~~LaSgs~Dg~V~IWd  583 (743)
                      ...|++++.|++|++|.....                .....+.+|.+|.++|.-++|..  -|.+||+++.||+|.||.
T Consensus        23 gkrlATcsSD~tVkIf~v~~n----------------~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWk   86 (299)
T KOG1332|consen   23 GKRLATCSSDGTVKIFEVRNN----------------GQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWK   86 (299)
T ss_pred             cceeeeecCCccEEEEEEcCC----------------CCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEe
Confidence            578999999999999955433                12367889999999999999965  899999999999999999


Q ss_pred             CCCCe--EEEEEcccCCCEEEEEEcCC--CCEEEEEeCCCeEEEEECCCCC--eeEEEEecCCCCeEEEEEecC---C--
Q 004603          584 TESFT--VKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRVWDTENPD--YSLRTFTGHSTTVMSLDFHPS---K--  652 (743)
Q Consensus       584 ~~t~~--~i~~l~~H~~~V~~vafsp~--~~~LaSgs~Dg~VrvWDl~~~~--~~l~~l~~h~~~V~sl~fsp~---g--  652 (743)
                      -.++.  ....+..|...|++|+|.|.  |-.|++++.||.|.|.+++...  ...+....|.-.|++++|.|.   |  
T Consensus        87 e~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~  166 (299)
T KOG1332|consen   87 EENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSL  166 (299)
T ss_pred             cCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccc
Confidence            87763  33456689999999999995  6789999999999999988652  223455689999999999996   3  


Q ss_pred             --------CcEEEEEeCCCcEEEEECCCCee--eEEEeccCc----eeeecC----CCEEEEEecCCeEEEEecccc---
Q 004603          653 --------EDLLCSCDNNSEIRYWSINNGSC--AGVFKVCNL----MPIILK----GCFILNSIFNCYLLLHRIFLN---  711 (743)
Q Consensus       653 --------~~lL~Sgs~Dg~IrvWDl~tg~~--v~~~~~~~~----i~~s~~----g~~l~sgs~Dg~I~vh~~~v~---  711 (743)
                              .+-|++|+.|..|+||+..++..  -+.+.+|+.    +++.|.    -.+|++++.||++.||+....   
T Consensus       167 ~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~  246 (299)
T KOG1332|consen  167 VDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEP  246 (299)
T ss_pred             cccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCc
Confidence                    13488999999999999988642  234666643    445553    357999999999999876532   


Q ss_pred             ------------eEEEEecCCCCEEEEEeCCCeEEEeCCCc
Q 004603          712 ------------LLSVSEWCNPDEISTSSWKDSCCSHRELY  740 (743)
Q Consensus       712 ------------~l~v~~~~~~~~laSgs~DG~V~iWd~~~  740 (743)
                                  +..+++...+..|+.++.|..|.+|++..
T Consensus       247 wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~  287 (299)
T KOG1332|consen  247 WKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENV  287 (299)
T ss_pred             ccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence                        22233333377999999999999998753

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.82  E-value=1e-18  Score=202.32  Aligned_cols=244  Identities=18%  Similarity=0.241  Sum_probs=187.7

Q ss_pred             CCCCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCC
Q 004603          477 NGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS  556 (743)
Q Consensus       477 ~~s~~~s~~~fs~dg~~~l~~~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~  556 (743)
                      .+...+.|+.|++||               .++++||.|+.|.+|.-.. ......++.--.......++.+..+.+|.+
T Consensus        67 ~h~~sv~CVR~S~dG---------------~~lAsGSDD~~v~iW~~~~-~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~  130 (942)
T KOG0973|consen   67 DHDGSVNCVRFSPDG---------------SYLASGSDDRLVMIWERAE-IGSGTVFGSTGGAKNVESWKVVSILRGHDS  130 (942)
T ss_pred             cccCceeEEEECCCC---------------CeEeeccCcceEEEeeecc-cCCcccccccccccccceeeEEEEEecCCC
Confidence            345678899999988               6999999999999996553 111112211122334567889999999999


Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEE
Q 004603          557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF  636 (743)
Q Consensus       557 ~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l  636 (743)
                      .|.+++|+|++.+||+++.|++|.|||..+++.+.++++|...|..+.|+|-|++|+|-+.|++|+||++.+-.. .+.+
T Consensus       131 DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i-~k~I  209 (942)
T KOG0973|consen  131 DVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGI-EKSI  209 (942)
T ss_pred             ccceeccCCCccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEccccee-eEee
Confidence            999999999999999999999999999999999999999999999999999999999999999999999766332 3444


Q ss_pred             ecC------CCCeEEEEEecCCCcEEEEEeC---CCcEEEEECCCCeeeEEEeccCc----eeeec------C-------
Q 004603          637 TGH------STTVMSLDFHPSKEDLLCSCDN---NSEIRYWSINNGSCAGVFKVCNL----MPIIL------K-------  690 (743)
Q Consensus       637 ~~h------~~~V~sl~fsp~g~~lL~Sgs~---Dg~IrvWDl~tg~~v~~~~~~~~----i~~s~------~-------  690 (743)
                      .++      +..+..+.|+|||.++.+.-+.   -.++.|.+..+.++-..|-+|..    +.|.|      .       
T Consensus       210 t~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~  289 (942)
T KOG0973|consen  210 TKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQ  289 (942)
T ss_pred             ccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccC
Confidence            433      3457889999999865543322   23688888888787777777743    34443      1       


Q ss_pred             C----CEEEEEecCCeEEEEeccc-------------ceEEEEecCCCCEEEEEeCCCeEEEeC
Q 004603          691 G----CFILNSIFNCYLLLHRIFL-------------NLLSVSEWCNPDEISTSSWKDSCCSHR  737 (743)
Q Consensus       691 g----~~l~sgs~Dg~I~vh~~~v-------------~~l~v~~~~~~~~laSgs~DG~V~iWd  737 (743)
                      .    +.+++|+.|++|.||....             ...++++..++..|+.||.||+|.+..
T Consensus       290 ~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~  353 (942)
T KOG0973|consen  290 PNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIH  353 (942)
T ss_pred             CCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEE
Confidence            1    3688999999999986431             233444445588999999999998863

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.82  E-value=1.8e-18  Score=176.83  Aligned_cols=218  Identities=18%  Similarity=0.237  Sum_probs=173.9

Q ss_pred             EEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe
Q 004603          509 VDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT  588 (743)
Q Consensus       509 l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~  588 (743)
                      ++.|++...|..|.......+.       ......++.+...+..|.+.|+|+++  +++++|+||.|.+|+|||+.+..
T Consensus         4 iIvGtYE~~i~Gf~l~~~~~~~-------~~s~~~~l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~   74 (362)
T KOG0294|consen    4 IIVGTYEHVILGFKLDPEPKGC-------TDSVKPTLKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRK   74 (362)
T ss_pred             EEEeeeeeEEEEEEeccCcccc-------ccccceeeeccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchh
Confidence            5678887777777443332111       12234566778888999999999999  58999999999999999999988


Q ss_pred             EEEEEcccCCCEEEEEEcCCCC--EEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEE
Q 004603          589 VKSTLEEHTQWITDVRFSPSLS--RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR  666 (743)
Q Consensus       589 ~i~~l~~H~~~V~~vafsp~~~--~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~Ir  666 (743)
                      .+..+-.|.+.|+++.|.++..  .|++|+.||.|.+||+..- .++.++++|.+.|+.|+.||.++ +..+.+.|+.+|
T Consensus        75 qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W-~~~~slK~H~~~Vt~lsiHPS~K-LALsVg~D~~lr  152 (362)
T KOG0294|consen   75 QLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSW-ELLKSLKAHKGQVTDLSIHPSGK-LALSVGGDQVLR  152 (362)
T ss_pred             hhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCe-EEeeeecccccccceeEecCCCc-eEEEEcCCceee
Confidence            8888989999999999998654  8999999999999999875 56999999999999999999987 555888899999


Q ss_pred             EEECCCCeeeEEEec---cCceeeecCCCEEEEEecCCeEEEEecc-----------cceEEEEecCCCCEEEEEeCCCe
Q 004603          667 YWSINNGSCAGVFKV---CNLMPIILKGCFILNSIFNCYLLLHRIF-----------LNLLSVSEWCNPDEISTSSWKDS  732 (743)
Q Consensus       667 vWDl~tg~~v~~~~~---~~~i~~s~~g~~l~sgs~Dg~I~vh~~~-----------v~~l~v~~~~~~~~laSgs~DG~  732 (743)
                      .||+-.|+...+...   .+.+.|++.|.+++.++.++ |-+|...           ...+++.+. +.+++++|+.|+.
T Consensus       153 ~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~-i~i~q~d~A~v~~~i~~~~r~l~~~~l-~~~~L~vG~d~~~  230 (362)
T KOG0294|consen  153 TWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNK-IDIYQLDNASVFREIENPKRILCATFL-DGSELLVGGDNEW  230 (362)
T ss_pred             eehhhcCccceeeccCCcceeeEEcCCCCEEEEEeccE-EEEEecccHhHhhhhhccccceeeeec-CCceEEEecCCce
Confidence            999998887665553   24478999999888888775 4443322           123333333 3789999999999


Q ss_pred             EEEeCCC
Q 004603          733 CCSHREL  739 (743)
Q Consensus       733 V~iWd~~  739 (743)
                      |++||++
T Consensus       231 i~~~D~d  237 (362)
T KOG0294|consen  231 ISLKDTD  237 (362)
T ss_pred             EEEeccC
Confidence            9999987

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.82  E-value=1.9e-18  Score=174.89  Aligned_cols=197  Identities=17%  Similarity=0.280  Sum_probs=158.5

Q ss_pred             CCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEC
Q 004603          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCT  584 (743)
Q Consensus       506 ~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafsp-dg~~LaSgs~Dg~V~IWd~  584 (743)
                      .+++.+|+.|+.|.+|+..+..+......-+.    .........-.+|.-.|.++.|-| |...|.+++.|++++|||+
T Consensus        56 grymlSGgadgsi~v~Dl~n~t~~e~s~li~k----~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDt  131 (397)
T KOG4283|consen   56 GRYMLSGGADGSIAVFDLQNATDYEASGLIAK----HKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDT  131 (397)
T ss_pred             ceEEeecCCCccEEEEEeccccchhhccceeh----eeeeccccCCccceeeeeeeEEeeecCceeecccccceEEEeec
Confidence            48999999999999998876543332211111    001111222357899999999999 7779999999999999999


Q ss_pred             CCCeEEEEEcccCCCEEEEEEcCC---CCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeC
Q 004603          585 ESFTVKSTLEEHTQWITDVRFSPS---LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN  661 (743)
Q Consensus       585 ~t~~~i~~l~~H~~~V~~vafsp~---~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~  661 (743)
                      .+.+....|+ ..+.|++-+|+|-   -.+||+|..|-.|++.|+..+.. .+++.||...|.+|.|+|..+++|++|+.
T Consensus       132 nTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~-sH~LsGHr~~vlaV~Wsp~~e~vLatgsa  209 (397)
T KOG4283|consen  132 NTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSF-SHTLSGHRDGVLAVEWSPSSEWVLATGSA  209 (397)
T ss_pred             ccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcc-eeeeccccCceEEEEeccCceeEEEecCC
Confidence            9988877776 4678999999993   34678888999999999999775 89999999999999999999999999999


Q ss_pred             CCcEEEEECCCC-eeeEEEeccC------------------ceeeecCCCEEEEEecCCeEEEEec
Q 004603          662 NSEIRYWSINNG-SCAGVFKVCN------------------LMPIILKGCFILNSIFNCYLLLHRI  708 (743)
Q Consensus       662 Dg~IrvWDl~tg-~~v~~~~~~~------------------~i~~s~~g~~l~sgs~Dg~I~vh~~  708 (743)
                      ||.||+||++.. .|..++..|.                  .+++..+|.++++.+.|.++++|..
T Consensus       210 Dg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~  275 (397)
T KOG4283|consen  210 DGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNM  275 (397)
T ss_pred             CceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeec
Confidence            999999999975 5666665432                  3677889999999999999999764

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.81  E-value=2.5e-19  Score=188.05  Aligned_cols=160  Identities=23%  Similarity=0.396  Sum_probs=125.4

Q ss_pred             ceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC---CeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCC
Q 004603          543 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES---FTVKSTLEEHTQWITDVRFSPSLSRLATSSADR  619 (743)
Q Consensus       543 ~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t---~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg  619 (743)
                      .+......+..|++.|.-|.||++|++||+|+.|.++.||++..   .+...++.+|..+|..+.|+||.++|++|+.|.
T Consensus       212 ip~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e  291 (519)
T KOG0293|consen  212 IPSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDE  291 (519)
T ss_pred             CCchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchH
Confidence            34456678899999999999999999999999999999998754   456789999999999999999999999999999


Q ss_pred             eEEEEECCCCCeeEEEEe-cCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEecc-----CceeeecCCCE
Q 004603          620 TVRVWDTENPDYSLRTFT-GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVC-----NLMPIILKGCF  693 (743)
Q Consensus       620 ~VrvWDl~~~~~~l~~l~-~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~-----~~i~~s~~g~~  693 (743)
                      .+++||+.++.. ++.+. +|...+.+++|.|||.. +++|+.|++|..||++.. ....+.+.     ..+++.+||.+
T Consensus       292 ~~~lwDv~tgd~-~~~y~~~~~~S~~sc~W~pDg~~-~V~Gs~dr~i~~wdlDgn-~~~~W~gvr~~~v~dlait~Dgk~  368 (519)
T KOG0293|consen  292 VLSLWDVDTGDL-RHLYPSGLGFSVSSCAWCPDGFR-FVTGSPDRTIIMWDLDGN-ILGNWEGVRDPKVHDLAITYDGKY  368 (519)
T ss_pred             heeeccCCcchh-hhhcccCcCCCcceeEEccCCce-eEecCCCCcEEEecCCcc-hhhcccccccceeEEEEEcCCCcE
Confidence            999999999775 44443 45678999999999875 559999999999998733 22222222     12444455555


Q ss_pred             EEEEecCCeEEE
Q 004603          694 ILNSIFNCYLLL  705 (743)
Q Consensus       694 l~sgs~Dg~I~v  705 (743)
                      +++.+.|..|++
T Consensus       369 vl~v~~d~~i~l  380 (519)
T KOG0293|consen  369 VLLVTVDKKIRL  380 (519)
T ss_pred             EEEEecccceee
Confidence            555555554444

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.81  E-value=1.7e-19  Score=186.84  Aligned_cols=226  Identities=17%  Similarity=0.190  Sum_probs=172.7

Q ss_pred             EEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcC
Q 004603          486 MFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP  565 (743)
Q Consensus       486 ~fs~dg~~~l~~~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafsp  565 (743)
                      ..+.||..+++-.++.+    ..+++|+.||.|++|+.                   ..-.+..++++|.+.|..|++..
T Consensus        63 ~gHrdGV~~lakhp~~l----s~~aSGs~DG~VkiWnl-------------------sqR~~~~~f~AH~G~V~Gi~v~~  119 (433)
T KOG0268|consen   63 DGHRDGVSCLAKHPNKL----STVASGSCDGEVKIWNL-------------------SQRECIRTFKAHEGLVRGICVTQ  119 (433)
T ss_pred             cccccccchhhcCcchh----hhhhccccCceEEEEeh-------------------hhhhhhheeecccCceeeEEecc
Confidence            45566665555554433    45699999999999944                   33356788999999999999975


Q ss_pred             CCCEEEEEeCCCcEEEEECCC---------------------------Ce-----------EEEEEcccCCCEEEEEEcC
Q 004603          566 DGKLLATGGHDKKAVLWCTES---------------------------FT-----------VKSTLEEHTQWITDVRFSP  607 (743)
Q Consensus       566 dg~~LaSgs~Dg~V~IWd~~t---------------------------~~-----------~i~~l~~H~~~V~~vafsp  607 (743)
                        ..+++++.|++|+.|-++.                           |+           ++..+.--.+.|.++.|+|
T Consensus       120 --~~~~tvgdDKtvK~wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNp  197 (433)
T KOG0268|consen  120 --TSFFTVGDDKTVKQWKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNP  197 (433)
T ss_pred             --cceEEecCCcceeeeeccCCcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCC
Confidence              6788999999999996431                           11           1222222345689999999


Q ss_pred             C-CCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCC-eeeEEEeccCc-
Q 004603          608 S-LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFKVCNL-  684 (743)
Q Consensus       608 ~-~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg-~~v~~~~~~~~-  684 (743)
                      . ...|++|+.|+.|.+||+++... ++... -...-+.|+|+| ..+.|+++++|..++.||++.. ..+.++.+|.. 
T Consensus       198 vETsILas~~sDrsIvLyD~R~~~P-l~KVi-~~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsA  274 (433)
T KOG0268|consen  198 VETSILASCASDRSIVLYDLRQASP-LKKVI-LTMRTNTICWNP-EAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSA  274 (433)
T ss_pred             CcchheeeeccCCceEEEecccCCc-cceee-eeccccceecCc-cccceeeccccccceehhhhhhcccchhhccccee
Confidence            5 56778888999999999998765 44333 234567899999 4567889999999999999974 56677777644 


Q ss_pred             ---eeeecCCCEEEEEecCCeEEEEeccc-------------ceEEEEecCCCCEEEEEeCCCeEEEeCCC
Q 004603          685 ---MPIILKGCFILNSIFNCYLLLHRIFL-------------NLLSVSEWCNPDEISTSSWKDSCCSHREL  739 (743)
Q Consensus       685 ---i~~s~~g~~l~sgs~Dg~I~vh~~~v-------------~~l~v~~~~~~~~laSgs~DG~V~iWd~~  739 (743)
                         +.|+|.|.-+++|+.|.+|+|.....             .++++.+..+..+|+|||.|+.|++|+..
T Consensus       275 V~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~  345 (433)
T KOG0268|consen  275 VMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAK  345 (433)
T ss_pred             EEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecc
Confidence               67999999999999999999944321             46777778889999999999999999864

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.81  E-value=9.7e-20  Score=203.52  Aligned_cols=211  Identities=14%  Similarity=0.287  Sum_probs=168.4

Q ss_pred             CCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEC
Q 004603          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCT  584 (743)
Q Consensus       506 ~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafsp-dg~~LaSgs~Dg~V~IWd~  584 (743)
                      +++|++++..|.|.+|+....                ...+.+..|.+|+..|+++.|++ ...+|++||.||+|++||+
T Consensus       100 ~NlIAT~s~nG~i~vWdlnk~----------------~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~Dl  163 (839)
T KOG0269|consen  100 SNLIATCSTNGVISVWDLNKS----------------IRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDL  163 (839)
T ss_pred             hhhheeecCCCcEEEEecCcc----------------ccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEee
Confidence            588999999999999965432                12244567889999999999998 6679999999999999999


Q ss_pred             CCCeEEEEEcccCCCEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCC
Q 004603          585 ESFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS  663 (743)
Q Consensus       585 ~t~~~i~~l~~H~~~V~~vafsp-~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg  663 (743)
                      +..+...++.+....|.+|.|+| .+..|+++...|+|++||+|.+..+...+..|.++|.++.|||++ .+||+|+.|+
T Consensus       164 R~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr-~~lATGGRDK  242 (839)
T KOG0269|consen  164 RSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNR-EWLATGGRDK  242 (839)
T ss_pred             ecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCC-ceeeecCCCc
Confidence            99999999999999999999999 588999999999999999999998899999999999999999964 5899999999


Q ss_pred             cEEEEECCCCee-----eEEEeccCceeeecCCCE-EEEE--ecCCeEEEEecccc---------------eEEEEecCC
Q 004603          664 EIRYWSINNGSC-----AGVFKVCNLMPIILKGCF-ILNS--IFNCYLLLHRIFLN---------------LLSVSEWCN  720 (743)
Q Consensus       664 ~IrvWDl~tg~~-----v~~~~~~~~i~~s~~g~~-l~sg--s~Dg~I~vh~~~v~---------------~l~v~~~~~  720 (743)
                      .|+|||+.+.+.     +.+......+.|-|.-.+ |+++  ..|-.|.||++...               .++|.. .+
T Consensus       243 ~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~-~d  321 (839)
T KOG0269|consen  243 MVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDS-GD  321 (839)
T ss_pred             cEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccC-CC
Confidence            999999986543     222333344667776665 3433  34778888876543               333433 23


Q ss_pred             CCEEEEEeCCCeEE
Q 004603          721 PDEISTSSWKDSCC  734 (743)
Q Consensus       721 ~~~laSgs~DG~V~  734 (743)
                      ...+.+++-||+|.
T Consensus       322 ~~~l~s~sKD~tv~  335 (839)
T KOG0269|consen  322 RINLWSCSKDGTVL  335 (839)
T ss_pred             ceeeEeecCccHHH
Confidence            56777777777764

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.81  E-value=1.4e-18  Score=183.65  Aligned_cols=210  Identities=14%  Similarity=0.156  Sum_probs=180.5

Q ss_pred             CEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004603          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES  586 (743)
Q Consensus       507 ~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t  586 (743)
                      .++.+|+.|.++.++                   +......+.+++||+.+|+++.|+++...+++++.|..|+||.+..
T Consensus       232 ~~ilTGG~d~~av~~-------------------d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~  292 (506)
T KOG0289|consen  232 SKILTGGEDKTAVLF-------------------DKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPL  292 (506)
T ss_pred             CcceecCCCCceEEE-------------------ecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeecccc
Confidence            678999999999999                   3334467788999999999999999999999999999999999988


Q ss_pred             CeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEec--CCCCeEEEEEecCCCcEEEEEeCCCc
Q 004603          587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG--HSTTVMSLDFHPSKEDLLCSCDNNSE  664 (743)
Q Consensus       587 ~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~--h~~~V~sl~fsp~g~~lL~Sgs~Dg~  664 (743)
                      .........|..+|+.+..+|.|.||++++.|++..+.|++++.. +.....  ..-.+++.+|||||- +|.+|..|+.
T Consensus       293 ~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~-lt~vs~~~s~v~~ts~~fHpDgL-ifgtgt~d~~  370 (506)
T KOG0289|consen  293 SSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQ-LTVVSDETSDVEYTSAAFHPDGL-IFGTGTPDGV  370 (506)
T ss_pred             ccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcE-EEEEeeccccceeEEeeEcCCce-EEeccCCCce
Confidence            777778889999999999999999999999999999999999775 333322  223589999999975 8889999999


Q ss_pred             EEEEECCCCeeeEEEeccCc----eeeecCCCEEEEEecCCeEEEEeccc-------------ceEEEEecCCCCEEEEE
Q 004603          665 IRYWSINNGSCAGVFKVCNL----MPIILKGCFILNSIFNCYLLLHRIFL-------------NLLSVSEWCNPDEISTS  727 (743)
Q Consensus       665 IrvWDl~tg~~v~~~~~~~~----i~~s~~g~~l~sgs~Dg~I~vh~~~v-------------~~l~v~~~~~~~~laSg  727 (743)
                      |+|||+.+...+..|.+|+.    +.|+.+|-|++++.+|+.|++||..-             .+..++++..+.+++.+
T Consensus       371 vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~  450 (506)
T KOG0289|consen  371 VKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIA  450 (506)
T ss_pred             EEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEee
Confidence            99999999999999998854    78999999999999999999998642             13444555558899999


Q ss_pred             eCCCeEEEeC
Q 004603          728 SWKDSCCSHR  737 (743)
Q Consensus       728 s~DG~V~iWd  737 (743)
                      |.|=.|++++
T Consensus       451 g~~l~Vy~~~  460 (506)
T KOG0289|consen  451 GSDLQVYICK  460 (506)
T ss_pred             cceeEEEEEe
Confidence            9998888876

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.81  E-value=1.7e-17  Score=170.32  Aligned_cols=223  Identities=16%  Similarity=0.165  Sum_probs=174.2

Q ss_pred             CCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCe
Q 004603          479 ASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKV  558 (743)
Q Consensus       479 s~~~s~~~fs~dg~~~l~~~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V  558 (743)
                      ...+..+.|+.+|               .++++++.|+.+++|++.++                   +.++++..+...|
T Consensus        14 ~~~i~sl~fs~~G---------------~~litss~dDsl~LYd~~~g-------------------~~~~ti~skkyG~   59 (311)
T KOG1446|consen   14 NGKINSLDFSDDG---------------LLLITSSEDDSLRLYDSLSG-------------------KQVKTINSKKYGV   59 (311)
T ss_pred             CCceeEEEecCCC---------------CEEEEecCCCeEEEEEcCCC-------------------ceeeEeecccccc
Confidence            3455667777777               57888999999999977665                   5667777777789


Q ss_pred             EEEEEcCCCCEEEEEeC--CCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEE
Q 004603          559 ESCHFSPDGKLLATGGH--DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF  636 (743)
Q Consensus       559 ~siafspdg~~LaSgs~--Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l  636 (743)
                      ..++|....+.++.++.  |.+|+..++.+.+.++.|.||...|.+++.+|-++.+++++.|++||+||++..++ ...+
T Consensus        60 ~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~c-qg~l  138 (311)
T KOG1446|consen   60 DLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKC-QGLL  138 (311)
T ss_pred             cEEEEecCCceEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCC-ceEE
Confidence            99999776666666665  89999999999999999999999999999999889999999999999999997554 4433


Q ss_pred             ecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCC--eeeEEEec-------cCceeeecCCCEEEEEecCCeEEEEe
Q 004603          637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG--SCAGVFKV-------CNLMPIILKGCFILNSIFNCYLLLHR  707 (743)
Q Consensus       637 ~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg--~~v~~~~~-------~~~i~~s~~g~~l~sgs~Dg~I~vh~  707 (743)
                      .  ...-..++|+|+|- ++|.+.....|++||+|.-  .+..+|..       .+.+.|+++|++|+.+...+.+.+-+
T Consensus       139 ~--~~~~pi~AfDp~GL-ifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lD  215 (311)
T KOG1446|consen  139 N--LSGRPIAAFDPEGL-IFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLD  215 (311)
T ss_pred             e--cCCCcceeECCCCc-EEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEE
Confidence            3  23334579999985 6667766669999999963  33344432       24588999999999999988877733


Q ss_pred             ccc---------------ceEEEEecCCCCEEEEEeCCCeEEEeCCC
Q 004603          708 IFL---------------NLLSVSEWCNPDEISTSSWKDSCCSHREL  739 (743)
Q Consensus       708 ~~v---------------~~l~v~~~~~~~~laSgs~DG~V~iWd~~  739 (743)
                      ...               ..+...+.+++.+|++|+.||+|.+|+-.
T Consensus       216 Af~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~  262 (311)
T KOG1446|consen  216 AFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLE  262 (311)
T ss_pred             ccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcC
Confidence            221               12455566678899999999999999753

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.81  E-value=8.2e-19  Score=194.26  Aligned_cols=208  Identities=17%  Similarity=0.224  Sum_probs=172.8

Q ss_pred             CEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEE-EEEcC-CCCEEEEEeCCCcEEEEEC
Q 004603          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVES-CHFSP-DGKLLATGGHDKKAVLWCT  584 (743)
Q Consensus       507 ~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~s-iafsp-dg~~LaSgs~Dg~V~IWd~  584 (743)
                      ..+.++|.|+++++|.-                 ++..+.+...+.+|.+-|.+ ++|-+ ++-++++|+.|++|.+|..
T Consensus        26 ~~i~s~sRd~t~~vw~~-----------------~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~   88 (745)
T KOG0301|consen   26 VCIISGSRDGTVKVWAK-----------------KGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKL   88 (745)
T ss_pred             eEEeecCCCCceeeeec-----------------cCcccccceecccCcceeeccceeccccCcceEeecccceEEEEec
Confidence            36899999999999932                 44455666778889988888 88886 5667999999999999999


Q ss_pred             CCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCc
Q 004603          585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE  664 (743)
Q Consensus       585 ~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~  664 (743)
                      ....++.++.+|...|+|++...++. ++|||+|.++++|-+..   +...+.+|...|+++.+-|++  .++|||.|.+
T Consensus        89 ~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~---l~~~l~gH~asVWAv~~l~e~--~~vTgsaDKt  162 (745)
T KOG0301|consen   89 SQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGE---LVYSLQGHTASVWAVASLPEN--TYVTGSADKT  162 (745)
T ss_pred             CCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecchh---hhcccCCcchheeeeeecCCC--cEEeccCcce
Confidence            99999999999999999999877766 99999999999998754   456799999999999999987  5779999999


Q ss_pred             EEEEECCCCeeeEEEeccCcee---eecCCCEEEEEecCCeEEEEecccce-----------EEEEecCCCCEEEEEeCC
Q 004603          665 IRYWSINNGSCAGVFKVCNLMP---IILKGCFILNSIFNCYLLLHRIFLNL-----------LSVSEWCNPDEISTSSWK  730 (743)
Q Consensus       665 IrvWDl~tg~~v~~~~~~~~i~---~s~~g~~l~sgs~Dg~I~vh~~~v~~-----------l~v~~~~~~~~laSgs~D  730 (743)
                      ||+|.-  ++++++|.+|+.+.   ...+...+++++.||.|++|+....+           .+++...+.+.|+|+|.|
T Consensus       163 IklWk~--~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gED  240 (745)
T KOG0301|consen  163 IKLWKG--GTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDLDGEVLLEMHGHTNFVYSISMALSDGLIVSTGED  240 (745)
T ss_pred             eeeccC--CchhhhhccchhheeeeEEecCCCeEeecCCceEEEEeccCceeeeeeccceEEEEEEecCCCCeEEEecCC
Confidence            999975  78899999986533   22355678899999999999875432           233334457899999999


Q ss_pred             CeEEEeCCC
Q 004603          731 DSCCSHREL  739 (743)
Q Consensus       731 G~V~iWd~~  739 (743)
                      +++++|+..
T Consensus       241 rtlriW~~~  249 (745)
T KOG0301|consen  241 RTLRIWKKD  249 (745)
T ss_pred             ceEEEeecC
Confidence            999999875

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.80  E-value=7.2e-19  Score=178.84  Aligned_cols=190  Identities=24%  Similarity=0.302  Sum_probs=155.9

Q ss_pred             eeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC------------------CeEEEEEcccCCCEEEEEEcC
Q 004603          546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES------------------FTVKSTLEEHTQWITDVRFSP  607 (743)
Q Consensus       546 ~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t------------------~~~i~~l~~H~~~V~~vafsp  607 (743)
                      -+...+..|..++.+.+|++||.++|||+.|..|+|.|++.                  ...++++..|.+.|+++.|||
T Consensus       103 yEt~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHP  182 (430)
T KOG0640|consen  103 YETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHP  182 (430)
T ss_pred             cceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecc
Confidence            34567789999999999999999999999999999999861                  135788999999999999999


Q ss_pred             CCCEEEEEeCCCeEEEEECCCCCe--eEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEec----
Q 004603          608 SLSRLATSSADRTVRVWDTENPDY--SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKV----  681 (743)
Q Consensus       608 ~~~~LaSgs~Dg~VrvWDl~~~~~--~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~----  681 (743)
                      ....|++|+.|++|++||+.....  ..++|. ....|.+|.|||.|+++| .|..--++|+||+++.+|...-..    
T Consensus       183 re~ILiS~srD~tvKlFDfsK~saKrA~K~~q-d~~~vrsiSfHPsGefll-vgTdHp~~rlYdv~T~QcfvsanPd~qh  260 (430)
T KOG0640|consen  183 RETILISGSRDNTVKLFDFSKTSAKRAFKVFQ-DTEPVRSISFHPSGEFLL-VGTDHPTLRLYDVNTYQCFVSANPDDQH  260 (430)
T ss_pred             hhheEEeccCCCeEEEEecccHHHHHHHHHhh-ccceeeeEeecCCCceEE-EecCCCceeEEeccceeEeeecCccccc
Confidence            999999999999999999976432  122333 346799999999998555 777778999999999988654331    


Q ss_pred             ---cCceeeecCCCEEEEEecCCeEEEEeccc--------------ceEEEEecCCCCEEEEEeCCCeEEEeC
Q 004603          682 ---CNLMPIILKGCFILNSIFNCYLLLHRIFL--------------NLLSVSEWCNPDEISTSSWKDSCCSHR  737 (743)
Q Consensus       682 ---~~~i~~s~~g~~l~sgs~Dg~I~vh~~~v--------------~~l~v~~~~~~~~laSgs~DG~V~iWd  737 (743)
                         .+.+.+++.|...++++.||.|++|+...              ...+..+..++.+|++.|-|.+|++|.
T Consensus       261 t~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWE  333 (430)
T KOG0640|consen  261 TGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWE  333 (430)
T ss_pred             ccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeee
Confidence               24467889999999999999999998642              223344556688999999999999995

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.80  E-value=1.1e-18  Score=194.25  Aligned_cols=205  Identities=20%  Similarity=0.302  Sum_probs=167.6

Q ss_pred             cCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 004603          503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW  582 (743)
Q Consensus       503 ~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IW  582 (743)
                      .+.....++||.|.+|+.|+..-..+......+.      ......+++ .-++.|.|+++||||++||++--|.+|+||
T Consensus       463 ~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~------lsl~~~rtL-el~ddvL~v~~Spdgk~LaVsLLdnTVkVy  535 (888)
T KOG0306|consen  463 SPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKV------LSLKHTRTL-ELEDDVLCVSVSPDGKLLAVSLLDNTVKVY  535 (888)
T ss_pred             cCCCCceEEecCCcEEEEEeEEEEeccCccccee------eeeccceEE-eccccEEEEEEcCCCcEEEEEeccCeEEEE
Confidence            3445778999999999999553221100000000      111112222 234569999999999999999999999999


Q ss_pred             ECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCC
Q 004603          583 CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN  662 (743)
Q Consensus       583 d~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~D  662 (743)
                      -+++.+....+.||.-+|.|+.++||+..++||+.|+.|++|-++-+. |-+.+.+|.+.|++|.|.|. .+++++|+.|
T Consensus       536 flDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGD-CHKS~fAHdDSvm~V~F~P~-~~~FFt~gKD  613 (888)
T KOG0306|consen  536 FLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGD-CHKSFFAHDDSVMSVQFLPK-THLFFTCGKD  613 (888)
T ss_pred             EecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccch-hhhhhhcccCceeEEEEccc-ceeEEEecCc
Confidence            999999999999999999999999999999999999999999998765 57888899999999999996 5678899999


Q ss_pred             CcEEEEECCCCeeeEEEeccCc----eeeecCCCEEEEEecCCeEEEEecccceEEEE
Q 004603          663 SEIRYWSINNGSCAGVFKVCNL----MPIILKGCFILNSIFNCYLLLHRIFLNLLSVS  716 (743)
Q Consensus       663 g~IrvWDl~tg~~v~~~~~~~~----i~~s~~g~~l~sgs~Dg~I~vh~~~v~~l~v~  716 (743)
                      +.|+.||-..-+++..+.+|..    .+++|+|.|+++++.|..|++|......+.+.
T Consensus       614 ~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~tde~~~lE  671 (888)
T KOG0306|consen  614 GKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTDEILILE  671 (888)
T ss_pred             ceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccCcceeee
Confidence            9999999999999999998854    67889999999999999999998766555543

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.80  E-value=9.3e-20  Score=185.81  Aligned_cols=181  Identities=22%  Similarity=0.341  Sum_probs=152.8

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEE--------cccCCCEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 004603          554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL--------EEHTQWITDVRFSPSLSRLATSSADRTVRVWD  625 (743)
Q Consensus       554 H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l--------~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWD  625 (743)
                      ..+.+.|..|+|||.+|++|+.||.|.|||..+|+....+        .-|...|.|+.|+.|...+++|+.||.|+||.
T Consensus       212 ~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWr  291 (508)
T KOG0275|consen  212 QKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWR  291 (508)
T ss_pred             cccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEE
Confidence            3445889999999999999999999999999988765433        35788999999999999999999999999999


Q ss_pred             CCCCCeeEEEEe-cCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEeccCc----eeeecCCCEEEEEecC
Q 004603          626 TENPDYSLRTFT-GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNL----MPIILKGCFILNSIFN  700 (743)
Q Consensus       626 l~~~~~~l~~l~-~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~~~----i~~s~~g~~l~sgs~D  700 (743)
                      ++++.+ ++.|. .|+..|+++.|+.|+..+| +++.|.+|||--+.+|+|++.|++|+.    ..|.++|.++++++.|
T Consensus       292 i~tG~C-lRrFdrAHtkGvt~l~FSrD~SqiL-S~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsD  369 (508)
T KOG0275|consen  292 IETGQC-LRRFDRAHTKGVTCLSFSRDNSQIL-SASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSD  369 (508)
T ss_pred             EecchH-HHHhhhhhccCeeEEEEccCcchhh-cccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCC
Confidence            999775 66665 8999999999999988777 899999999999999999999999865    5689999999999999


Q ss_pred             CeEEEEeccc----------------ceEEEEecCCCCEEEEEeCCCeEEEeC
Q 004603          701 CYLLLHRIFL----------------NLLSVSEWCNPDEISTSSWKDSCCSHR  737 (743)
Q Consensus       701 g~I~vh~~~v----------------~~l~v~~~~~~~~laSgs~DG~V~iWd  737 (743)
                      |+|++|+...                ..+..- ..++..++.|....+|+|-+
T Consensus       370 gtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~-PKnpeh~iVCNrsntv~imn  421 (508)
T KOG0275|consen  370 GTVKVWHGKTTECLSTFKPLGTDYPVNSVILL-PKNPEHFIVCNRSNTVYIMN  421 (508)
T ss_pred             ccEEEecCcchhhhhhccCCCCcccceeEEEc-CCCCceEEEEcCCCeEEEEe
Confidence            9999987532                111111 12266788888888877754

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.80  E-value=9.4e-19  Score=186.42  Aligned_cols=220  Identities=14%  Similarity=0.154  Sum_probs=169.8

Q ss_pred             CCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEC
Q 004603          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCT  584 (743)
Q Consensus       506 ~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafsp-dg~~LaSgs~Dg~V~IWd~  584 (743)
                      ..+|++++..+.|.||+.....+.....+         ...+-..+.+|...-++++|++ ..-.|++|+.|++|++||+
T Consensus       137 p~iVAt~t~~~dv~Vfd~tk~~s~~~~~~---------~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi  207 (422)
T KOG0264|consen  137 PNIVATKTSSGDVYVFDYTKHPSKPKASG---------ECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDI  207 (422)
T ss_pred             CcEEEecCCCCCEEEEEeccCCCcccccc---------cCCCceEEEeecccccccccccccceeEeeccCCCcEEEEec
Confidence            37889999999999997765543222111         3345567889999889999998 4457999999999999998


Q ss_pred             CCC-------eEEEEEcccCCCEEEEEEcC-CCCEEEEEeCCCeEEEEECCC-CCeeEEEEecCCCCeEEEEEecCCCcE
Q 004603          585 ESF-------TVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTEN-PDYSLRTFTGHSTTVMSLDFHPSKEDL  655 (743)
Q Consensus       585 ~t~-------~~i~~l~~H~~~V~~vafsp-~~~~LaSgs~Dg~VrvWDl~~-~~~~l~~l~~h~~~V~sl~fsp~g~~l  655 (743)
                      ...       .+...+.+|+..|..|+|++ +..+|++++.|+.+.|||+|+ ...+.....+|...|+|++|+|-+.++
T Consensus       208 ~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~i  287 (422)
T KOG0264|consen  208 NAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFI  287 (422)
T ss_pred             cccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCce
Confidence            642       24567889999999999999 577899999999999999996 344567788999999999999999999


Q ss_pred             EEEEeCCCcEEEEECCCC-eeeEEEeccCc----eeeecC-CCEEEEEecCCeEEEEecccceEEE----EecCC-CCEE
Q 004603          656 LCSCDNNSEIRYWSINNG-SCAGVFKVCNL----MPIILK-GCFILNSIFNCYLLLHRIFLNLLSV----SEWCN-PDEI  724 (743)
Q Consensus       656 L~Sgs~Dg~IrvWDl~tg-~~v~~~~~~~~----i~~s~~-g~~l~sgs~Dg~I~vh~~~v~~l~v----~~~~~-~~~l  724 (743)
                      ||+||.|++|++||+|+. +++.++.+|..    +.|+|. ...|++++.|+++.||+..--.-.-    ....+ ..++
T Consensus       288 lAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF  367 (422)
T KOG0264|consen  288 LATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLF  367 (422)
T ss_pred             EEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeE
Confidence            999999999999999974 57788888754    556664 4567788899999999875422221    11122 3356


Q ss_pred             EEEeCCCeEE
Q 004603          725 STSSWKDSCC  734 (743)
Q Consensus       725 aSgs~DG~V~  734 (743)
                      .=||.-++|.
T Consensus       368 ~HgGH~~kV~  377 (422)
T KOG0264|consen  368 IHGGHTAKVS  377 (422)
T ss_pred             EecCcccccc
Confidence            6677776664

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.80  E-value=1e-18  Score=183.70  Aligned_cols=207  Identities=17%  Similarity=0.234  Sum_probs=167.2

Q ss_pred             CCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004603          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE  585 (743)
Q Consensus       506 ~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~  585 (743)
                      .+.+...+.|+++++|...                   ......++.+|+++|+++.|.-....+++|+.|.+|++||+.
T Consensus       231 ~~~~iAas~d~~~r~Wnvd-------------------~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~  291 (459)
T KOG0288|consen  231 NKHVIAASNDKNLRLWNVD-------------------SLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQ  291 (459)
T ss_pred             CceEEeecCCCceeeeecc-------------------chhhhhhhcccccceeeehhhccccceeeccccchhhhhhhh
Confidence            3677888899999999443                   335678899999999999998766669999999999999999


Q ss_pred             CCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcE
Q 004603          586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI  665 (743)
Q Consensus       586 t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~I  665 (743)
                      ...|.+++-. ...+.+|...  ...+++|-.|++||+||++.... +.....+. .|++|..++++..++ +++.|.++
T Consensus       292 k~~C~kt~l~-~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~-~~sv~~gg-~vtSl~ls~~g~~lL-sssRDdtl  365 (459)
T KOG0288|consen  292 KAYCSKTVLP-GSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADK-TRSVPLGG-RVTSLDLSMDGLELL-SSSRDDTL  365 (459)
T ss_pred             hhheeccccc-cccccceEec--ceeeeecccccceEEEeccCCce-eeEeecCc-ceeeEeeccCCeEEe-eecCCCce
Confidence            8888776542 3445566554  45688888999999999998665 66666554 899999999998777 66889999


Q ss_pred             EEEECCCCeeeEEEecc--------CceeeecCCCEEEEEecCCeEEEEecccc--------------eEEEEecCCCCE
Q 004603          666 RYWSINNGSCAGVFKVC--------NLMPIILKGCFILNSIFNCYLLLHRIFLN--------------LLSVSEWCNPDE  723 (743)
Q Consensus       666 rvWDl~tg~~v~~~~~~--------~~i~~s~~g~~l~sgs~Dg~I~vh~~~v~--------------~l~v~~~~~~~~  723 (743)
                      .+.|+++.+....|...        +.+.|+|++.|+++|+.||.|.||+....              .+++.+.+.+..
T Consensus       366 ~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~  445 (459)
T KOG0288|consen  366 KVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSG  445 (459)
T ss_pred             eeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCch
Confidence            99999999988887642        45889999999999999999999975421              223333344789


Q ss_pred             EEEEeCCCeEEEeC
Q 004603          724 ISTSSWKDSCCSHR  737 (743)
Q Consensus       724 laSgs~DG~V~iWd  737 (743)
                      +++++.++.|.+|.
T Consensus       446 Llsadk~~~v~lW~  459 (459)
T KOG0288|consen  446 LLSADKQKAVTLWT  459 (459)
T ss_pred             hhcccCCcceEecC
Confidence            99999999999994

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.79  E-value=7.7e-18  Score=175.04  Aligned_cols=191  Identities=19%  Similarity=0.235  Sum_probs=160.5

Q ss_pred             eeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 004603          546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD  625 (743)
Q Consensus       546 ~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWD  625 (743)
                      ..+.+|..|++.|++|+.+|+.++++||+.|....||++.+++....+.+|+..|+|+.|+.++.+||||+.+|.|+||+
T Consensus        55 dS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~  134 (399)
T KOG0296|consen   55 DSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFK  134 (399)
T ss_pred             cceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEE
Confidence            34678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEeccCc----eeeecCCCEEEEEecCC
Q 004603          626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNL----MPIILKGCFILNSIFNC  701 (743)
Q Consensus       626 l~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~~~----i~~s~~g~~l~sgs~Dg  701 (743)
                      ..++.. ...+......+.=++|||.+. +|++|+.||.|.+|.+.++...+.+.+|..    =.|.|+|+.++++..|+
T Consensus       135 ~stg~~-~~~~~~e~~dieWl~WHp~a~-illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dg  212 (399)
T KOG0296|consen  135 VSTGGE-QWKLDQEVEDIEWLKWHPRAH-ILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDG  212 (399)
T ss_pred             cccCce-EEEeecccCceEEEEeccccc-EEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCc
Confidence            999776 555544455677799999765 777999999999999999878888888754    34889999999999999


Q ss_pred             eEEEEecccce-------------EEEEecCCCCEEEEEeCCCeEEEeCC
Q 004603          702 YLLLHRIFLNL-------------LSVSEWCNPDEISTSSWKDSCCSHRE  738 (743)
Q Consensus       702 ~I~vh~~~v~~-------------l~v~~~~~~~~laSgs~DG~V~iWd~  738 (743)
                      +|++|+.....             -.+.....+..+++|+.++.+++-..
T Consensus       213 ti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~  262 (399)
T KOG0296|consen  213 TIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNN  262 (399)
T ss_pred             eEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEcc
Confidence            99998754321             11222223667888888888776543

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.79  E-value=3e-18  Score=189.25  Aligned_cols=231  Identities=18%  Similarity=0.204  Sum_probs=172.9

Q ss_pred             EEEEeeCCCcEEEEecCCCCCCCC----cc----cc----------ccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCE
Q 004603          508 FVDDGSLDDNVESFLSPDDADPRD----RV----GR----------SAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKL  569 (743)
Q Consensus       508 ~l~sGs~D~~V~iw~s~~~~~~~~----~~----~~----------~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~  569 (743)
                      -+.+++.|++|++|+.........    ..    .+          +.+...+.-.+.....-+....|.||+++|+|.+
T Consensus       394 cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqh  473 (1080)
T KOG1408|consen  394 CFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQH  473 (1080)
T ss_pred             ceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcce
Confidence            457899999999997765221111    00    00          0111111111111222234456999999999999


Q ss_pred             EEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcC---CCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEE
Q 004603          570 LATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP---SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL  646 (743)
Q Consensus       570 LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp---~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl  646 (743)
                      ||+|..-|+++||++.+.+....++.|...|.|+.|+.   ..++|++++.|..|+|||+...-.++.++.+|.+.|++|
T Consensus       474 LAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsv  553 (1080)
T KOG1408|consen  474 LASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSV  553 (1080)
T ss_pred             ecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEE
Confidence            99999999999999999888889999999999999976   356899999999999999976655566777777777766


Q ss_pred             EEecCC------------------------------------------------CcEEEEEeCCCcEEEEECCCCeeeEE
Q 004603          647 DFHPSK------------------------------------------------EDLLCSCDNNSEIRYWSINNGSCAGV  678 (743)
Q Consensus       647 ~fsp~g------------------------------------------------~~lL~Sgs~Dg~IrvWDl~tg~~v~~  678 (743)
                      .|.-.|                                                ..++++++.|..|||||+.+|+.++.
T Consensus       554 KFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~  633 (1080)
T KOG1408|consen  554 KFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKS  633 (1080)
T ss_pred             EEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeee
Confidence            665422                                                12457888999999999999999999


Q ss_pred             EeccCc-------eeeecCCCEEEEEecCCeEEE--------------EecccceEEEEecCCCCEEEEEeCCCeEEEeC
Q 004603          679 FKVCNL-------MPIILKGCFILNSIFNCYLLL--------------HRIFLNLLSVSEWCNPDEISTSSWKDSCCSHR  737 (743)
Q Consensus       679 ~~~~~~-------i~~s~~g~~l~sgs~Dg~I~v--------------h~~~v~~l~v~~~~~~~~laSgs~DG~V~iWd  737 (743)
                      |++...       +.+.|.|.||++...|.++.+              |...++.+.|..+|.  .|++.+.||.|.||+
T Consensus       634 FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCk--HlISvsgDgCIFvW~  711 (1080)
T KOG1408|consen  634 FKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCK--HLISVSGDGCIFVWK  711 (1080)
T ss_pred             ecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccch--hheeecCCceEEEEE
Confidence            997422       557799999999999999998              455566666766654  899999999999998


Q ss_pred             CCc
Q 004603          738 ELY  740 (743)
Q Consensus       738 ~~~  740 (743)
                      -..
T Consensus       712 lp~  714 (1080)
T KOG1408|consen  712 LPL  714 (1080)
T ss_pred             Cch
Confidence            643

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.79  E-value=2.7e-18  Score=183.16  Aligned_cols=182  Identities=19%  Similarity=0.218  Sum_probs=158.4

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCC------
Q 004603          555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN------  628 (743)
Q Consensus       555 ~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~------  628 (743)
                      .++|.|++-+|+|.+|+.|+..+.+++|.+.+|..+.++.+|--.|+|+.|+-|+.+|+||+.||.|++|++..      
T Consensus        81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~  160 (476)
T KOG0646|consen   81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADN  160 (476)
T ss_pred             ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeeccccc
Confidence            46799999999999999998999999999999999999999999999999999999999999999999998632      


Q ss_pred             --CCeeEEEEecCCCCeEEEEEecCCC-cEEEEEeCCCcEEEEECCCCeeeEEEecc---CceeeecCCCEEEEEecCCe
Q 004603          629 --PDYSLRTFTGHSTTVMSLDFHPSKE-DLLCSCDNNSEIRYWSINNGSCAGVFKVC---NLMPIILKGCFILNSIFNCY  702 (743)
Q Consensus       629 --~~~~l~~l~~h~~~V~sl~fsp~g~-~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~---~~i~~s~~g~~l~sgs~Dg~  702 (743)
                        ...+++.|..|.-+|+++...+.|. -.++|+|.|.+||+||+..|..+.++...   .++.++|.++.+++|+.+|.
T Consensus       161 ~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~  240 (476)
T KOG0646|consen  161 DHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGK  240 (476)
T ss_pred             CCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCCcce
Confidence              2346889999999999999887632 36779999999999999999988777654   55789999999999999999


Q ss_pred             EEE------------------------------Eec--ccceEEEEecCCCCEEEEEeCCCeEEEeCC
Q 004603          703 LLL------------------------------HRI--FLNLLSVSEWCNPDEISTSSWKDSCCSHRE  738 (743)
Q Consensus       703 I~v------------------------------h~~--~v~~l~v~~~~~~~~laSgs~DG~V~iWd~  738 (743)
                      |.+                              |..  .+++++++.+  +.++++|+.||+|+|||-
T Consensus       241 I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~D--gtlLlSGd~dg~VcvWdi  306 (476)
T KOG0646|consen  241 IFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTD--GTLLLSGDEDGKVCVWDI  306 (476)
T ss_pred             EEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecC--ccEEEeeCCCCCEEEEec
Confidence            887                              223  4566666665  789999999999999985

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.79  E-value=3.3e-18  Score=183.77  Aligned_cols=232  Identities=18%  Similarity=0.213  Sum_probs=167.6

Q ss_pred             CCCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEee-CCCC
Q 004603          478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP-ASTS  556 (743)
Q Consensus       478 ~s~~~s~~~fs~dg~~~l~~~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~H~~  556 (743)
                      |+..++.+.+.|.|               ..+++|++|.+|++|++..-..               .+..++.+. ..+.
T Consensus       166 gtk~Vsal~~Dp~G---------------aR~~sGs~Dy~v~~wDf~gMda---------------s~~~fr~l~P~E~h  215 (641)
T KOG0772|consen  166 GTKIVSALAVDPSG---------------ARFVSGSLDYTVKFWDFQGMDA---------------SMRSFRQLQPCETH  215 (641)
T ss_pred             CceEEEEeeecCCC---------------ceeeeccccceEEEEecccccc---------------cchhhhccCccccc
Confidence            44555555566555               5789999999999998765421               111122221 2334


Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEE------------cccCCCEEEEEEcCC-CCEEEEEeCCCeEEE
Q 004603          557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL------------EEHTQWITDVRFSPS-LSRLATSSADRTVRV  623 (743)
Q Consensus       557 ~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l------------~~H~~~V~~vafsp~-~~~LaSgs~Dg~Vrv  623 (743)
                      .|.++.|++.|..|++.+..-.++|+|-+....+...            +||...++|.+|+|. ...|+||+.||++|+
T Consensus       216 ~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRi  295 (641)
T KOG0772|consen  216 QINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRI  295 (641)
T ss_pred             ccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEE
Confidence            5999999999998888888889999997665544433            589999999999996 567999999999999


Q ss_pred             EECCCCCeeEEEEe-----cCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCee--eEEE-ecc------Cceeeec
Q 004603          624 WDTENPDYSLRTFT-----GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC--AGVF-KVC------NLMPIIL  689 (743)
Q Consensus       624 WDl~~~~~~l~~l~-----~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~--v~~~-~~~------~~i~~s~  689 (743)
                      ||+.+.+.-+.+++     +..-.|++++|+|+|. ++++|+.||.|.+||.++...  ...+ ..|      +++.|+.
T Consensus       296 Wdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~-~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~  374 (641)
T KOG0772|consen  296 WDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGK-LIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSY  374 (641)
T ss_pred             EecCCchhheeEEeeccCCCcccCceeeecCCCcc-hhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEecc
Confidence            99988765555554     3345689999999998 577889999999999865322  2222 222      5688999


Q ss_pred             CCCEEEEEecCCeEEEEecccc---------------eEEEEecCCCCEEEEEe------CCCeEEEeCCCc
Q 004603          690 KGCFILNSIFNCYLLLHRIFLN---------------LLSVSEWCNPDEISTSS------WKDSCCSHRELY  740 (743)
Q Consensus       690 ~g~~l~sgs~Dg~I~vh~~~v~---------------~l~v~~~~~~~~laSgs------~DG~V~iWd~~~  740 (743)
                      +|++|++.+.|+++++|+..-.               ....++.++..+|++|.      ..|++++||...
T Consensus       375 dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t  446 (641)
T KOG0772|consen  375 DGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMT  446 (641)
T ss_pred             ccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccc
Confidence            9999999999999999987532               11223334456777775      456677776543

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.78  E-value=9.5e-20  Score=202.16  Aligned_cols=189  Identities=23%  Similarity=0.354  Sum_probs=166.3

Q ss_pred             EEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004603          549 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN  628 (743)
Q Consensus       549 ~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~  628 (743)
                      ..+..|...|.|+..-..++.+++|+.|.++-+|.+.....+..|.+|...|.||.|++...+|+.|+.||+|++||+..
T Consensus        22 ~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDlee  101 (825)
T KOG0267|consen   22 REFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEE  101 (825)
T ss_pred             hhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhh
Confidence            45567888999999877889999999999999999988888888999999999999999999999999999999999998


Q ss_pred             CCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEeccCc----eeeecCCCEEEEEecCCeEE
Q 004603          629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNL----MPIILKGCFILNSIFNCYLL  704 (743)
Q Consensus       629 ~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~~~----i~~s~~g~~l~sgs~Dg~I~  704 (743)
                      .+. ++++.+|...+.+|+|+|-+. ++++|+.|+.+++||++..-|.+.+++|..    +.|+|+|+|+++|++|++++
T Consensus       102 Ak~-vrtLtgh~~~~~sv~f~P~~~-~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvk  179 (825)
T KOG0267|consen  102 AKI-VRTLTGHLLNITSVDFHPYGE-FFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVK  179 (825)
T ss_pred             hhh-hhhhhccccCcceeeeccceE-EeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceee
Confidence            765 889999999999999999986 558999999999999999889999998644    66889999999999999999


Q ss_pred             EEecccc------------eEEEEecCCCCEEEEEeCCCeEEEeCCC
Q 004603          705 LHRIFLN------------LLSVSEWCNPDEISTSSWKDSCCSHREL  739 (743)
Q Consensus       705 vh~~~v~------------~l~v~~~~~~~~laSgs~DG~V~iWd~~  739 (743)
                      +|+..-.            ...+.+.....++++||.|++|++||-+
T Consensus       180 i~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dle  226 (825)
T KOG0267|consen  180 IWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLE  226 (825)
T ss_pred             eecccccccccccccccccccccccCchhhhhccCCCCceeeeeccc
Confidence            9987432            2233333335689999999999999987

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.78  E-value=1.1e-18  Score=177.69  Aligned_cols=196  Identities=16%  Similarity=0.209  Sum_probs=167.0

Q ss_pred             eeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEE
Q 004603          544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV  623 (743)
Q Consensus       544 ~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~Vrv  623 (743)
                      .+..++.+.||.+.|+.++.......+.+++.|.+.+||.+++++|+.++.||.+.|.+|.|++.+.+++|++.|++.+|
T Consensus       137 ~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHI  216 (481)
T KOG0300|consen  137 KFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHI  216 (481)
T ss_pred             eEeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHH
Confidence            34567888999999999999887789999999999999999999999999999999999999999999999999999999


Q ss_pred             EECC------C---------------------------------CCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCc
Q 004603          624 WDTE------N---------------------------------PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE  664 (743)
Q Consensus       624 WDl~------~---------------------------------~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~  664 (743)
                      |...      .                                 -..++..+.+|.+.|.+.+|-..|. -+++++.|.+
T Consensus       217 W~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~-Q~vTaSWDRT  295 (481)
T KOG0300|consen  217 WKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQ-QMVTASWDRT  295 (481)
T ss_pred             HHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcc-eeeeeecccc
Confidence            9731      0                                 0125778899999999999988776 4559999999


Q ss_pred             EEEEECCCCeeeEEEeccC----ceeeecCCCEEEEEecCCeEEEEecccce-------------EEEEecCCCCEEEEE
Q 004603          665 IRYWSINNGSCAGVFKVCN----LMPIILKGCFILNSIFNCYLLLHRIFLNL-------------LSVSEWCNPDEISTS  727 (743)
Q Consensus       665 IrvWDl~tg~~v~~~~~~~----~i~~s~~g~~l~sgs~Dg~I~vh~~~v~~-------------l~v~~~~~~~~laSg  727 (743)
                      ..+||+++++.+..+.+|.    .++.+|.-+++++.+.|.++++|+.....             ..+.+.. ...+++|
T Consensus       296 AnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~-dd~vVSg  374 (481)
T KOG0300|consen  296 ANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNT-DDRVVSG  374 (481)
T ss_pred             ceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEec-CCceeec
Confidence            9999999999999999984    46778999999999999999998865321             1222222 5689999


Q ss_pred             eCCCeEEEeCCCcc
Q 004603          728 SWKDSCCSHRELYL  741 (743)
Q Consensus       728 s~DG~V~iWd~~~~  741 (743)
                      +.|.+|++||-+..
T Consensus       375 SDDrTvKvWdLrNM  388 (481)
T KOG0300|consen  375 SDDRTVKVWDLRNM  388 (481)
T ss_pred             CCCceEEEeeeccc
Confidence            99999999997653

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.78  E-value=3e-18  Score=183.32  Aligned_cols=217  Identities=18%  Similarity=0.263  Sum_probs=165.8

Q ss_pred             CCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEee--CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004603          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP--ASTSKVESCHFSPDGKLLATGGHDKKAVLWC  583 (743)
Q Consensus       506 ~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~H~~~V~siafspdg~~LaSgs~Dg~V~IWd  583 (743)
                      .+.|.+|+. +.|++|+.....                ...++..+.  .....|.+|...|||+.|++|++-.+|.|||
T Consensus       431 trhVyTgGk-gcVKVWdis~pg----------------~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWD  493 (705)
T KOG0639|consen  431 TRHVYTGGK-GCVKVWDISQPG----------------NKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWD  493 (705)
T ss_pred             cceeEecCC-CeEEEeeccCCC----------------CCCccccccccCcccceeeeEecCCCceEEeccccceeeeee
Confidence            355555554 677788654431                112222222  2345699999999999999999999999999


Q ss_pred             CCCCeE--EEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeC
Q 004603          584 TESFTV--KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN  661 (743)
Q Consensus       584 ~~t~~~--i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~  661 (743)
                      +....+  ...+....-.+++++.+||.+..++|+.||.|+|||+++.. .++.|.||.+.+.||+++++|..+. +|+.
T Consensus       494 LAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~-~VrqfqGhtDGascIdis~dGtklW-TGGl  571 (705)
T KOG0639|consen  494 LAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQT-LVRQFQGHTDGASCIDISKDGTKLW-TGGL  571 (705)
T ss_pred             ccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccce-eeecccCCCCCceeEEecCCCceee-cCCC
Confidence            976433  22333333467889999999999999999999999999855 5999999999999999999998776 9999


Q ss_pred             CCcEEEEECCCCeeeEEEeccC---ceeeecCCCEEEEEecCCeEEE-----------EecccceEEEEecCCCCEEEEE
Q 004603          662 NSEIRYWSINNGSCAGVFKVCN---LMPIILKGCFILNSIFNCYLLL-----------HRIFLNLLSVSEWCNPDEISTS  727 (743)
Q Consensus       662 Dg~IrvWDl~tg~~v~~~~~~~---~i~~s~~g~~l~sgs~Dg~I~v-----------h~~~v~~l~v~~~~~~~~laSg  727 (743)
                      |.+||.||+++++.+..+....   .+.++|.+.||++|-.++.+.|           |-....++++.+..-+.++++.
T Consensus       572 DntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvSt  651 (705)
T KOG0639|consen  572 DNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVST  651 (705)
T ss_pred             ccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCccceeecccccEEEEEEecccCceeeec
Confidence            9999999999998765544332   2456799999999999998887           2233345555555558899999


Q ss_pred             eCCCeEEEeCCCcc
Q 004603          728 SWKDSCCSHRELYL  741 (743)
Q Consensus       728 s~DG~V~iWd~~~~  741 (743)
                      |-|..+-.|...|-
T Consensus       652 GkDnlLnawrtPyG  665 (705)
T KOG0639|consen  652 GKDNLLNAWRTPYG  665 (705)
T ss_pred             CchhhhhhccCccc
Confidence            99999999998874

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.76  E-value=3.2e-18  Score=191.52  Aligned_cols=223  Identities=15%  Similarity=0.185  Sum_probs=167.3

Q ss_pred             cCCCCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCC
Q 004603          476 HNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST  555 (743)
Q Consensus       476 ~~~s~~~s~~~fs~dg~~~l~~~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~  555 (743)
                      ..+.+.+..+.|++...              .+|.+||.|+.|++|+....                   +.+.++.+..
T Consensus       130 ~EH~Rs~~~ldfh~tep--------------~iliSGSQDg~vK~~DlR~~-------------------~S~~t~~~nS  176 (839)
T KOG0269|consen  130 NEHERSANKLDFHSTEP--------------NILISGSQDGTVKCWDLRSK-------------------KSKSTFRSNS  176 (839)
T ss_pred             hhhccceeeeeeccCCc--------------cEEEecCCCceEEEEeeecc-------------------cccccccccc
Confidence            34566666777776443              79999999999999966544                   2344556678


Q ss_pred             CCeEEEEEcC-CCCEEEEEeCCCcEEEEECCC-CeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe-e
Q 004603          556 SKVESCHFSP-DGKLLATGGHDKKAVLWCTES-FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY-S  632 (743)
Q Consensus       556 ~~V~siafsp-dg~~LaSgs~Dg~V~IWd~~t-~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~-~  632 (743)
                      ..|.+|.|+| .+..|+++.+.|.+.+||++. .++...+.+|.++|.|+.|||+..+||||+.|++|+|||+.+++. +
T Consensus       177 ESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~  256 (839)
T KOG0269|consen  177 ESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKP  256 (839)
T ss_pred             hhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccc
Confidence            8899999999 788999999999999999986 346677889999999999999999999999999999999986443 2


Q ss_pred             EEEEecCCCCeEEEEEecCCCcEEEEEe--CCCcEEEEECCCC-eeeEEEeccCc----eeee-cCCCEEEEEecCCeEE
Q 004603          633 LRTFTGHSTTVMSLDFHPSKEDLLCSCD--NNSEIRYWSINNG-SCAGVFKVCNL----MPII-LKGCFILNSIFNCYLL  704 (743)
Q Consensus       633 l~~l~~h~~~V~sl~fsp~g~~lL~Sgs--~Dg~IrvWDl~tg-~~v~~~~~~~~----i~~s-~~g~~l~sgs~Dg~I~  704 (743)
                      ..++. ...+|..|.|-|+..+.|++|+  .|-.|+|||++.. -+..+|..|+.    +++. .+-..+++++.|++|.
T Consensus       257 ~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~  335 (839)
T KOG0269|consen  257 KHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVL  335 (839)
T ss_pred             eeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHH
Confidence            33332 4578999999999998898876  5778999999865 34566666643    3443 3566799999999998


Q ss_pred             EEecccceEEEEecCCCCEEEEEeCCCeEE
Q 004603          705 LHRIFLNLLSVSEWCNPDEISTSSWKDSCC  734 (743)
Q Consensus       705 vh~~~v~~l~v~~~~~~~~laSgs~DG~V~  734 (743)
                      .|......-.+...  +...++.|-+|.+.
T Consensus       336 qh~~knat~pid~a--~~~~~s~g~~g~l~  363 (839)
T KOG0269|consen  336 QHLFKNATTPIDLA--NNGGLSVGQFGDLY  363 (839)
T ss_pred             HhhhhcccChhhhc--CcccccccccCcee
Confidence            87655444333333  22344444444443

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.76  E-value=6.5e-17  Score=165.26  Aligned_cols=221  Identities=15%  Similarity=0.211  Sum_probs=164.3

Q ss_pred             ccCCCCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCC
Q 004603          475 QHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAS  554 (743)
Q Consensus       475 ~~~~s~~~s~~~fs~dg~~~l~~~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H  554 (743)
                      ...+...++.+.|++..               ..|..++||+++++|+....                    .....-.|
T Consensus         9 ~npP~d~IS~v~f~~~~---------------~~LLvssWDgslrlYdv~~~--------------------~l~~~~~~   53 (323)
T KOG1036|consen    9 ENPPEDGISSVKFSPSS---------------SDLLVSSWDGSLRLYDVPAN--------------------SLKLKFKH   53 (323)
T ss_pred             CCCChhceeeEEEcCcC---------------CcEEEEeccCcEEEEeccch--------------------hhhhheec
Confidence            33444556677777544               56777789999999955432                    12222358


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEE
Q 004603          555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR  634 (743)
Q Consensus       555 ~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~  634 (743)
                      ..+|.+|+|.+ ...+++|+-||.|+++|+.++... .+-.|...|.||.+.+....+++|++|++|++||.+. +.++.
T Consensus        54 ~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~-~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~-~~~~~  130 (323)
T KOG1036|consen   54 GAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNED-QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRN-KVVVG  130 (323)
T ss_pred             CCceeeeeccC-CceEEEeccCceEEEEEecCCcce-eeccCCCceEEEEeeccCCeEEEcccCccEEEEeccc-ccccc
Confidence            88999999986 557999999999999999987654 4567999999999999888999999999999999997 33344


Q ss_pred             EEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEE-----Eec-cCceeeecCCCEEEEEecCCeEEE---
Q 004603          635 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV-----FKV-CNLMPIILKGCFILNSIFNCYLLL---  705 (743)
Q Consensus       635 ~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~-----~~~-~~~i~~s~~g~~l~sgs~Dg~I~v---  705 (743)
                      ++. ....|.+++..-  . .|+.|+.|..|.+||+++......     ++. ..++++.|.+.-.++++-||+|.+   
T Consensus       131 ~~d-~~kkVy~~~v~g--~-~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~  206 (323)
T KOG1036|consen  131 TFD-QGKKVYCMDVSG--N-RLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYF  206 (323)
T ss_pred             ccc-cCceEEEEeccC--C-EEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEcc
Confidence            444 334788888763  3 555777799999999998654331     222 244677788888888999999888   


Q ss_pred             ---------------Eec---------ccceEEEEecCCCCEEEEEeCCCeEEEeCCC
Q 004603          706 ---------------HRI---------FLNLLSVSEWCNPDEISTSSWKDSCCSHREL  739 (743)
Q Consensus       706 ---------------h~~---------~v~~l~v~~~~~~~~laSgs~DG~V~iWd~~  739 (743)
                                     |..         .+..+++.+.  .+.++|||.||.|.+||-.
T Consensus       207 d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~--~~tfaTgGsDG~V~~Wd~~  262 (323)
T KOG1036|consen  207 DDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPI--HGTFATGGSDGIVNIWDLF  262 (323)
T ss_pred             CCchHHhhhceeEEeeecccCCceEEEEeceeEeccc--cceEEecCCCceEEEccCc
Confidence                           221         2455666555  5689999999999999864

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.76  E-value=1.6e-17  Score=173.07  Aligned_cols=201  Identities=17%  Similarity=0.256  Sum_probs=148.2

Q ss_pred             CEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECC
Q 004603          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTE  585 (743)
Q Consensus       507 ~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafsp-dg~~LaSgs~Dg~V~IWd~~  585 (743)
                      .+.++=+..|.|.+|+...-..........   .......++.++.+|.+.=+.++||| ....|+||..-+.|++|...
T Consensus       166 ~~~aswse~G~V~Vw~l~~~l~~l~~~~~~---~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~  242 (440)
T KOG0302|consen  166 VLCASWSENGRVQVWDLAPHLNALSEPGLE---VKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPS  242 (440)
T ss_pred             ceeeeecccCcEEEEEchhhhhhhcCcccc---ccccccCceEEecccCccceeeecccccccccccCccccceEeeeec
Confidence            456666778899999665432211111111   12245678999999999999999999 22358888888899999988


Q ss_pred             CCeEE---EEEcccCCCEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCC-eeEEEEecCCCCeEEEEEecCCCcEEEEEe
Q 004603          586 SFTVK---STLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPD-YSLRTFTGHSTTVMSLDFHPSKEDLLCSCD  660 (743)
Q Consensus       586 t~~~i---~~l~~H~~~V~~vafsp~-~~~LaSgs~Dg~VrvWDl~~~~-~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs  660 (743)
                      ++.-.   .-|.+|+..|..++|+|. ...|+||+.||+|+|||+|.+. ......+.|.+.|+.|.|+..-. +|++|+
T Consensus       243 ~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~-lLasG~  321 (440)
T KOG0302|consen  243 TGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREP-LLASGG  321 (440)
T ss_pred             cCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcc-eeeecC
Confidence            75532   346789999999999995 6789999999999999999862 22333488999999999998866 999999


Q ss_pred             CCCcEEEEECCC---CeeeEEEeccC----ceeeecC-CCEEEEEecCCeEEEEecccc
Q 004603          661 NNSEIRYWSINN---GSCAGVFKVCN----LMPIILK-GCFILNSIFNCYLLLHRIFLN  711 (743)
Q Consensus       661 ~Dg~IrvWDl~t---g~~v~~~~~~~----~i~~s~~-g~~l~sgs~Dg~I~vh~~~v~  711 (743)
                      .||+++|||+|.   ++++..|+.|.    ++.++|. ...|++++.|..|.+|+..+.
T Consensus       322 DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE  380 (440)
T KOG0302|consen  322 DDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVE  380 (440)
T ss_pred             CCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeecc
Confidence            999999999985   45667777653    3455543 344556666777777766543

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.76  E-value=1.2e-16  Score=162.92  Aligned_cols=230  Identities=17%  Similarity=0.196  Sum_probs=151.9

Q ss_pred             cccCCCCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeC
Q 004603          474 LQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPA  553 (743)
Q Consensus       474 l~~~~s~~~s~~~fs~dg~~~l~~~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  553 (743)
                      +...+..-+.++.|+..|               +.+++|+.|.+|++|++..+               ..++......+.
T Consensus         8 i~s~h~DlihdVs~D~~G---------------RRmAtCSsDq~vkI~d~~~~---------------s~~W~~Ts~Wra   57 (361)
T KOG2445|consen    8 IDSGHKDLIHDVSFDFYG---------------RRMATCSSDQTVKIWDSTSD---------------SGTWSCTSSWRA   57 (361)
T ss_pred             cccCCcceeeeeeecccC---------------ceeeeccCCCcEEEEeccCC---------------CCceEEeeeEEe
Confidence            333444556677777766               68999999999999977443               346677788899


Q ss_pred             CCCCeEEEEEcC--CCCEEEEEeCCCcEEEEECC---------CCeEEEEEcccCCCEEEEEEcCC--CCEEEEEeCCCe
Q 004603          554 STSKVESCHFSP--DGKLLATGGHDKKAVLWCTE---------SFTVKSTLEEHTQWITDVRFSPS--LSRLATSSADRT  620 (743)
Q Consensus       554 H~~~V~siafsp--dg~~LaSgs~Dg~V~IWd~~---------t~~~i~~l~~H~~~V~~vafsp~--~~~LaSgs~Dg~  620 (743)
                      |.+.|..|.|.+  -|..||+++.|++|+||.=.         ......++......|++|.|.|.  |-.+++++.||+
T Consensus        58 h~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~  137 (361)
T KOG2445|consen   58 HDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGI  137 (361)
T ss_pred             cCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcE
Confidence            999999999965  78999999999999999641         12344566777889999999994  778999999999


Q ss_pred             EEEEECCCCCe------------------------------------------------------------------eEE
Q 004603          621 VRVWDTENPDY------------------------------------------------------------------SLR  634 (743)
Q Consensus       621 VrvWDl~~~~~------------------------------------------------------------------~l~  634 (743)
                      ||||+.-....                                                                  .+.
T Consensus       138 lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva  217 (361)
T KOG2445|consen  138 LRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVA  217 (361)
T ss_pred             EEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeeh
Confidence            99998632110                                                                  022


Q ss_pred             EEecCCCCeEEEEEecCC---CcEEEEEeCCCcEEEEECCCCeeeEEEeccCceeeecCCCEEEEEecCCeEEEEecccc
Q 004603          635 TFTGHSTTVMSLDFHPSK---EDLLCSCDNNSEIRYWSINNGSCAGVFKVCNLMPIILKGCFILNSIFNCYLLLHRIFLN  711 (743)
Q Consensus       635 ~l~~h~~~V~sl~fsp~g---~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~~~i~~s~~g~~l~sgs~Dg~I~vh~~~v~  711 (743)
                      ++.+|..+|++|+|.|.-   .++|++++.|| |+||.+......-.-.....-..--+-.....+..|+    |...+-
T Consensus       218 ~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~----H~~~VW  292 (361)
T KOG2445|consen  218 ELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDD----HNGEVW  292 (361)
T ss_pred             hcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccC----CCCceE
Confidence            344678889999998862   34788888888 9999887422100000000000000001111111111    222222


Q ss_pred             eEEEEecCCCCEEEEEeCCCeEEEeCCCc
Q 004603          712 LLSVSEWCNPDEISTSSWKDSCCSHRELY  740 (743)
Q Consensus       712 ~l~v~~~~~~~~laSgs~DG~V~iWd~~~  740 (743)
                      .+.|...  +..|++.|.||+|++|+-.|
T Consensus       293 rv~wNmt--GtiLsStGdDG~VRLWkany  319 (361)
T KOG2445|consen  293 RVRWNMT--GTILSSTGDDGCVRLWKANY  319 (361)
T ss_pred             EEEEeee--eeEEeecCCCceeeehhhhh
Confidence            3333333  66888888888888887665

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.75  E-value=4.6e-16  Score=159.79  Aligned_cols=189  Identities=16%  Similarity=0.161  Sum_probs=149.8

Q ss_pred             eeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEE
Q 004603          545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW  624 (743)
Q Consensus       545 ~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvW  624 (743)
                      .+.++.+.||...|++|+.+|-+..|++++.|++|++||++..++...+.--  .-..++|+|+|-++|++.....|++|
T Consensus        90 NkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~--~~pi~AfDp~GLifA~~~~~~~IkLy  167 (311)
T KOG1446|consen   90 NKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLS--GRPIAAFDPEGLIFALANGSELIKLY  167 (311)
T ss_pred             CceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecC--CCcceeECCCCcEEEEecCCCeEEEE
Confidence            3688999999999999999998899999999999999999987777666432  33467899999999999988899999


Q ss_pred             ECCCC-CeeEEEEec---CCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEeccC-------ceeeecCCCE
Q 004603          625 DTENP-DYSLRTFTG---HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCN-------LMPIILKGCF  693 (743)
Q Consensus       625 Dl~~~-~~~l~~l~~---h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~~-------~i~~s~~g~~  693 (743)
                      |+|.- +.+..++.-   .....+.|.|+|+|+.+|++ ...+.+++.|.-+|....++..+.       ..+|.|++.+
T Consensus       168 D~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLls-T~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~F  246 (311)
T KOG1446|consen  168 DLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLS-TNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKF  246 (311)
T ss_pred             EecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEE-eCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcE
Confidence            99875 445555543   35678999999999988855 447789999999999888887652       3668899999


Q ss_pred             EEEEecCCeEEEEecccceEEEEecC-----------CCCEEEEEeCCCeEEEe
Q 004603          694 ILNSIFNCYLLLHRIFLNLLSVSEWC-----------NPDEISTSSWKDSCCSH  736 (743)
Q Consensus       694 l~sgs~Dg~I~vh~~~v~~l~v~~~~-----------~~~~laSgs~DG~V~iW  736 (743)
                      +++|+.||+|.+|..........+..           ++.+..-.+.+..+.+|
T Consensus       247 vl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s~l~fw  300 (311)
T KOG1446|consen  247 VLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSASSNLVFW  300 (311)
T ss_pred             EEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecCceEEEE
Confidence            99999999999998754322222211           14566666677777777

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.75  E-value=8.7e-17  Score=161.27  Aligned_cols=189  Identities=16%  Similarity=0.112  Sum_probs=158.0

Q ss_pred             EeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004603          550 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP  629 (743)
Q Consensus       550 ~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~  629 (743)
                      .+.+|..+|+-|.|+.+|.+|++|+.|.++.||-..+|+.+-++.||++.|+|++.+.+.++++||+.|.++++||+.++
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG   84 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG   84 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence            46789999999999999999999999999999999899999999999999999999999999999999999999999998


Q ss_pred             CeeEEEEecCCCCeEEEEEecCCCcEEEEE----eCCCcEEEEECC-------CCeeeEEEecc----CceeeecCCCEE
Q 004603          630 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSC----DNNSEIRYWSIN-------NGSCAGVFKVC----NLMPIILKGCFI  694 (743)
Q Consensus       630 ~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sg----s~Dg~IrvWDl~-------tg~~v~~~~~~----~~i~~s~~g~~l  694 (743)
                      +. +..++ ...+|..+.|+++|..++++.    +..+.|.++|++       ..+++..+..+    +...+.+.+.+|
T Consensus        85 k~-la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~i  162 (327)
T KOG0643|consen   85 KQ-LATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETI  162 (327)
T ss_pred             cE-EEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEE
Confidence            86 66665 467899999999988666443    233689999998       34455555543    335688999999


Q ss_pred             EEEecCCeEEEEecccce-------------EEEEecCCCCEEEEEeCCCeEEEeCCCc
Q 004603          695 LNSIFNCYLLLHRIFLNL-------------LSVSEWCNPDEISTSSWKDSCCSHRELY  740 (743)
Q Consensus       695 ~sgs~Dg~I~vh~~~v~~-------------l~v~~~~~~~~laSgs~DG~V~iWd~~~  740 (743)
                      ++|.+||.|..|+.....             -.+.+..+..++++++.|.+.++||-.-
T Consensus       163 i~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~t  221 (327)
T KOG0643|consen  163 IAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRT  221 (327)
T ss_pred             EEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccc
Confidence            999999999998876421             1223344578999999999999998654

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.75  E-value=2.8e-17  Score=176.75  Aligned_cols=190  Identities=12%  Similarity=0.139  Sum_probs=140.2

Q ss_pred             EEEeeCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCe-EEEEEc-----ccCCCEEEEEEcCCCCEEEEEeCCCe
Q 004603          548 FQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTESFT-VKSTLE-----EHTQWITDVRFSPSLSRLATSSADRT  620 (743)
Q Consensus       548 ~~~l~~H~~~V~siafspdg-~~LaSgs~Dg~V~IWd~~t~~-~i~~l~-----~H~~~V~~vafsp~~~~LaSgs~Dg~  620 (743)
                      +..-+||...++|.+|+|+. ..|+|++.|++++|||+.+.+ .+.+|+     +-.-.|+.++|++++++||+|+.||.
T Consensus       261 m~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGS  340 (641)
T KOG0772|consen  261 MYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGS  340 (641)
T ss_pred             hhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCc
Confidence            44557999999999999954 579999999999999998644 233332     33456899999999999999999999


Q ss_pred             EEEEECCCCCe--eEEEEecCCC--CeEEEEEecCCCcEEEEEeCCCcEEEEECCCC-eeeEEEec------cCceeeec
Q 004603          621 VRVWDTENPDY--SLRTFTGHST--TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFKV------CNLMPIIL  689 (743)
Q Consensus       621 VrvWDl~~~~~--~l~~l~~h~~--~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg-~~v~~~~~------~~~i~~s~  689 (743)
                      |.+||......  ....-..|..  .|+||.|+++|.. |++-+.|++++|||++.. +++.+..+      .+.++|+|
T Consensus       341 IQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~-LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSP  419 (641)
T KOG0772|consen  341 IQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNY-LLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSP  419 (641)
T ss_pred             eeeeecCCcccccceEeeeccCCCCceeEEEeccccch-hhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCC
Confidence            99999754221  1233456776  8999999999985 558889999999999974 56665554      35689999


Q ss_pred             CCCEEEEEec------CCeEEEEe---------ccc---ceEEEEecCCCCEEEEEeCCCeEEEeCC
Q 004603          690 KGCFILNSIF------NCYLLLHR---------IFL---NLLSVSEWCNPDEISTSSWKDSCCSHRE  738 (743)
Q Consensus       690 ~g~~l~sgs~------Dg~I~vh~---------~~v---~~l~v~~~~~~~~laSgs~DG~V~iWd~  738 (743)
                      +...|++|+.      .+++.+.+         +.+   .+..+.+...-..|+.|+.||++++|-+
T Consensus       420 d~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyYd  486 (641)
T KOG0772|consen  420 DDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVYYD  486 (641)
T ss_pred             CceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCceEEEEC
Confidence            9999999864      34454422         111   1222222333467999999999998744

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.75  E-value=1e-17  Score=173.73  Aligned_cols=232  Identities=13%  Similarity=0.188  Sum_probs=175.8

Q ss_pred             ccccCCCCCceEEEEecCCCccc---ccc---CccccCCCCEEEEeeCCCcEEEEecCCCCC------------------
Q 004603          473 TLQHNGASSKSLLMFGSDGMGSL---TSA---PNQLTDMDRFVDDGSLDDNVESFLSPDDAD------------------  528 (743)
Q Consensus       473 ~l~~~~s~~~s~~~fs~dg~~~l---~~~---~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~------------------  528 (743)
                      ....+|+.+..++.|+.....++   ...   ...|.-....+.+++.|.+|+.|.......                  
T Consensus        80 s~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~~~~~tvgdDKtvK~wk~~~~p~~tilg~s~~~gIdh~~~~  159 (433)
T KOG0268|consen   80 STVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQTSFFTVGDDKTVKQWKIDGPPLHTILGKSVYLGIDHHRKN  159 (433)
T ss_pred             hhhhccccCceEEEEehhhhhhhheeecccCceeeEEecccceEEecCCcceeeeeccCCcceeeecccccccccccccc
Confidence            34567888999999988764221   111   111211225667888899999997433210                  


Q ss_pred             -CCC---ccccccccCCCceeeeEEEeeCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEE
Q 004603          529 -PRD---RVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDV  603 (743)
Q Consensus       529 -~~~---~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafsp-dg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~v  603 (743)
                       ...   .-+.+|+..   ...++..+.--.+.|.||.|+| ....|++|+.|+.|.|||++...++..+.- +..-..|
T Consensus       160 ~~FaTcGe~i~IWD~~---R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~-~mRTN~I  235 (433)
T KOG0268|consen  160 SVFATCGEQIDIWDEQ---RDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVIL-TMRTNTI  235 (433)
T ss_pred             ccccccCceeeecccc---cCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeee-eccccce
Confidence             000   112344433   3356777788888999999999 455788888999999999999888766542 3445789


Q ss_pred             EEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEec--
Q 004603          604 RFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKV--  681 (743)
Q Consensus       604 afsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~--  681 (743)
                      +|+|++-.|++|+.|..++.||++....++..+.+|.+.|.+|+|+|.|.. |++||.|.+||||..+.+.....+..  
T Consensus       236 swnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~E-fvsgsyDksIRIf~~~~~~SRdiYhtkR  314 (433)
T KOG0268|consen  236 CWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQE-FVSGSYDKSIRIFPVNHGHSRDIYHTKR  314 (433)
T ss_pred             ecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcch-hccccccceEEEeecCCCcchhhhhHhh
Confidence            999988889999999999999999988899999999999999999999985 55999999999999998876544432  


Q ss_pred             ---cCceeeecCCCEEEEEecCCeEEEEecc
Q 004603          682 ---CNLMPIILKGCFILNSIFNCYLLLHRIF  709 (743)
Q Consensus       682 ---~~~i~~s~~g~~l~sgs~Dg~I~vh~~~  709 (743)
                         .-++.++.|..|+++|++|+.|++|...
T Consensus       315 Mq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~  345 (433)
T KOG0268|consen  315 MQHVFCVKYSMDSKYIISGSDDGNVRLWKAK  345 (433)
T ss_pred             hheeeEEEEeccccEEEecCCCcceeeeecc
Confidence               3457799999999999999999999764

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.74  E-value=1.8e-17  Score=164.54  Aligned_cols=198  Identities=16%  Similarity=0.236  Sum_probs=162.0

Q ss_pred             ccCCCCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCC
Q 004603          475 QHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAS  554 (743)
Q Consensus       475 ~~~~s~~~s~~~fs~dg~~~l~~~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H  554 (743)
                      .+.+.+.+..+.|+-|.               +.|.+|+.+.-+++|+.....                  .+...+.+|
T Consensus        96 sf~hkhivk~~af~~ds---------------~~lltgg~ekllrvfdln~p~------------------App~E~~gh  142 (334)
T KOG0278|consen   96 SFEHKHIVKAVAFSQDS---------------NYLLTGGQEKLLRVFDLNRPK------------------APPKEISGH  142 (334)
T ss_pred             hhhhhheeeeEEecccc---------------hhhhccchHHHhhhhhccCCC------------------CCchhhcCC
Confidence            34445555666666554               688999999999999665431                  344667899


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEE
Q 004603          555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR  634 (743)
Q Consensus       555 ~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~  634 (743)
                      ++.|..+-|+...+.|+++.+|++||+||.+++..+.++.- ...|+++.++++|++|.++ ..+.|++||..+... +.
T Consensus       143 tg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~-~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~-lK  219 (334)
T KOG0278|consen  143 TGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEF-NSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGL-LK  219 (334)
T ss_pred             CCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEec-CCCCcceeeccCCCEEEEe-cCceeEEeccccccc-ee
Confidence            99999999999888999999999999999999999998864 5679999999999877655 578899999988654 55


Q ss_pred             EEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEE-ecc----CceeeecCCCEEEEEecCCeEEEEecc
Q 004603          635 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF-KVC----NLMPIILKGCFILNSIFNCYLLLHRIF  709 (743)
Q Consensus       635 ~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~-~~~----~~i~~s~~g~~l~sgs~Dg~I~vh~~~  709 (743)
                      .++ ....|.+..++|+. .++++|+.|..++.||..+++.+..+ ++|    .++.|+|+|...++|+.||+|++|...
T Consensus       220 s~k-~P~nV~SASL~P~k-~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~  297 (334)
T KOG0278|consen  220 SYK-MPCNVESASLHPKK-EFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTT  297 (334)
T ss_pred             ecc-CccccccccccCCC-ceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEec
Confidence            554 34568899999997 58889999999999999999998886 555    457899999999999999999999765


Q ss_pred             c
Q 004603          710 L  710 (743)
Q Consensus       710 v  710 (743)
                      .
T Consensus       298 ~  298 (334)
T KOG0278|consen  298 P  298 (334)
T ss_pred             C
Confidence            4

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.74  E-value=3.3e-17  Score=170.79  Aligned_cols=199  Identities=16%  Similarity=0.275  Sum_probs=145.4

Q ss_pred             EEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCC
Q 004603          508 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTES  586 (743)
Q Consensus       508 ~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafsp-dg~~LaSgs~Dg~V~IWd~~t  586 (743)
                      .+.+|..-+.|++|...++.         |..       ....+.+|+..|..++||| ....|++||.||+|+|||++.
T Consensus       226 ~LlsGDc~~~I~lw~~~~g~---------W~v-------d~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs  289 (440)
T KOG0302|consen  226 RLLSGDCVKGIHLWEPSTGS---------WKV-------DQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRS  289 (440)
T ss_pred             ccccCccccceEeeeeccCc---------eee-------cCccccccccchhhhccCCccCceEEeeecCceEEEEEecC
Confidence            35677777888888544431         211       1233567999999999999 556999999999999999998


Q ss_pred             C---eEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCC--eeEEEEecCCCCeEEEEEecCCCcEEEEEeC
Q 004603          587 F---TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD--YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN  661 (743)
Q Consensus       587 ~---~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~--~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~  661 (743)
                      +   .++.+ +.|.+.|..|.|+....+|++|+.||+++|||+|..+  .++.+|+.|..+|++|.|+|.....|++++.
T Consensus       290 ~~~~~~~~~-kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~  368 (440)
T KOG0302|consen  290 GPKKAAVST-KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGE  368 (440)
T ss_pred             CCccceeEe-eccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccC
Confidence            7   34433 7899999999999987799999999999999998643  4688999999999999999998888999999


Q ss_pred             CCcEEEEECCCCeeeEEEec--cCceeeecCCCEEEEEecCCeEEEE--ecccceEEEEecCCCCEEEEEeCCCeEE
Q 004603          662 NSEIRYWSINNGSCAGVFKV--CNLMPIILKGCFILNSIFNCYLLLH--RIFLNLLSVSEWCNPDEISTSSWKDSCC  734 (743)
Q Consensus       662 Dg~IrvWDl~tg~~v~~~~~--~~~i~~s~~g~~l~sgs~Dg~I~vh--~~~v~~l~v~~~~~~~~laSgs~DG~V~  734 (743)
                      |..|.+||+....-......  ...+.-.|.-          .+.||  ...++-+.|+... ++++++.+.||...
T Consensus       369 D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQ----------LLFVHqGQke~KevhWH~Qi-PG~lvsTa~dGfnV  434 (440)
T KOG0302|consen  369 DNQITIWDLSVEADEEEIDQEAAEGLQDLPPQ----------LLFVHQGQKEVKEVHWHRQI-PGLLVSTAIDGFNV  434 (440)
T ss_pred             CCcEEEEEeeccCChhhhccccccchhcCCce----------eEEEecchhHhhhheeccCC-CCeEEEecccceeE
Confidence            99999999874322111100  0000000110          12223  3456667777665 78999999998643

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.74  E-value=4.8e-17  Score=170.40  Aligned_cols=188  Identities=18%  Similarity=0.237  Sum_probs=147.7

Q ss_pred             eeEEEeeCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCC-------CeEEEEEcccCCCEEEEEEcCC-CCEEEEEe
Q 004603          546 TEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTES-------FTVKSTLEEHTQWITDVRFSPS-LSRLATSS  616 (743)
Q Consensus       546 ~~~~~l~~H~~~V~siafsp-dg~~LaSgs~Dg~V~IWd~~t-------~~~i~~l~~H~~~V~~vafsp~-~~~LaSgs  616 (743)
                      ..+-.+.+|+++|..++|+| +...||+||+|.+|+||.+..       .+++..+.+|...|..|+|||. .+.|+|++
T Consensus        72 ~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag  151 (472)
T KOG0303|consen   72 ASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAG  151 (472)
T ss_pred             CCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhcc
Confidence            34556789999999999999 677899999999999999854       3567789999999999999996 67889999


Q ss_pred             CCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEeccCc-----eeeecCC
Q 004603          617 ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNL-----MPIILKG  691 (743)
Q Consensus       617 ~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~~~-----i~~s~~g  691 (743)
                      .|.+|.+||+.++.. +.++. |...|++++|+.+|. +|++.+.|+.|||||.++++.+..-.+|..     ..|..+|
T Consensus       152 ~Dn~v~iWnv~tgea-li~l~-hpd~i~S~sfn~dGs-~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g  228 (472)
T KOG0303|consen  152 SDNTVSIWNVGTGEA-LITLD-HPDMVYSMSFNRDGS-LLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASG  228 (472)
T ss_pred             CCceEEEEeccCCce-eeecC-CCCeEEEEEeccCCc-eeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccC
Confidence            999999999999886 55565 999999999999987 788999999999999999999988766643     5577788


Q ss_pred             CEEEEEe---cCCeEEEEeccc--------------ceEEEEecCCCCE-EEEEeCCCeEEEe
Q 004603          692 CFILNSI---FNCYLLLHRIFL--------------NLLSVSEWCNPDE-ISTSSWKDSCCSH  736 (743)
Q Consensus       692 ~~l~sgs---~Dg~I~vh~~~v--------------~~l~v~~~~~~~~-laSgs~DG~V~iW  736 (743)
                      .++.+|.   .+..+.+|+...              .++---.+.+... .++|=.|+.|+.|
T Consensus       229 ~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYy  291 (472)
T KOG0303|consen  229 KIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYF  291 (472)
T ss_pred             ceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEE
Confidence            8555553   355677765321              1111112223344 4555689999988

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.74  E-value=6e-17  Score=179.53  Aligned_cols=186  Identities=21%  Similarity=0.316  Sum_probs=157.3

Q ss_pred             CCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004603          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE  585 (743)
Q Consensus       506 ~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~  585 (743)
                      ...+.+|+.|+.|..++.....                  ..+.++.+|...|+.+.|++|+++||+|+.|+.|.|||..
T Consensus       270 ~~~lssGsr~~~I~~~dvR~~~------------------~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~  331 (484)
T KOG0305|consen  270 SSVLSSGSRDGKILNHDVRISQ------------------HVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGL  331 (484)
T ss_pred             CceEEEecCCCcEEEEEEecch------------------hhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCC
Confidence            4788999999999999664432                  1111378999999999999999999999999999999998


Q ss_pred             CCeEEEEEcccCCCEEEEEEcC-CCCEEEEEeC--CCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEE-eC
Q 004603          586 SFTVKSTLEEHTQWITDVRFSP-SLSRLATSSA--DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC-DN  661 (743)
Q Consensus       586 t~~~i~~l~~H~~~V~~vafsp-~~~~LaSgs~--Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sg-s~  661 (743)
                      ...++..+.+|.+.|.+++|+| ...+||+|+.  |++|++||+.++.. +.... ..+-|++|.|++....++.+. ..
T Consensus       332 ~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~-i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s  409 (484)
T KOG0305|consen  332 SPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGAR-IDSVD-TGSQVCSLIWSKKYKELLSTHGYS  409 (484)
T ss_pred             CccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcE-ecccc-cCCceeeEEEcCCCCEEEEecCCC
Confidence            8889999999999999999999 5778998865  99999999998764 44443 457899999999987676554 45


Q ss_pred             CCcEEEEECCCCeeeEEEeccCc----eeeecCCCEEEEEecCCeEEEEecccc
Q 004603          662 NSEIRYWSINNGSCAGVFKVCNL----MPIILKGCFILNSIFNCYLLLHRIFLN  711 (743)
Q Consensus       662 Dg~IrvWDl~tg~~v~~~~~~~~----i~~s~~g~~l~sgs~Dg~I~vh~~~v~  711 (743)
                      +..|.||+..+.+.+..+.+|+.    +.++|+|.++++|+.|.++++|.....
T Consensus       410 ~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  410 ENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE  463 (484)
T ss_pred             CCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence            67899999999999999999865    568899999999999999999977653

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.73  E-value=4.8e-17  Score=178.81  Aligned_cols=214  Identities=19%  Similarity=0.206  Sum_probs=156.2

Q ss_pred             CCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEC
Q 004603          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCT  584 (743)
Q Consensus       506 ~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafsp-dg~~LaSgs~Dg~V~IWd~  584 (743)
                      +..|++.+-|.++++|+....                 ...-...+.||++.|.+++|.| +...|++|+.||.|.|||+
T Consensus       112 e~~lVsasGDsT~r~Wdvk~s-----------------~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~  174 (720)
T KOG0321|consen  112 ESLLVSASGDSTIRPWDVKTS-----------------RLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDC  174 (720)
T ss_pred             ceeEEEccCCceeeeeeeccc-----------------eeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEE
Confidence            467888899999999955433                 2333345789999999999999 5568999999999999998


Q ss_pred             CCCe---------------------------EEEEEcccCCCEEE---EEEcCCCCEEEEEeC-CCeEEEEECCCCCee-
Q 004603          585 ESFT---------------------------VKSTLEEHTQWITD---VRFSPSLSRLATSSA-DRTVRVWDTENPDYS-  632 (743)
Q Consensus       585 ~t~~---------------------------~i~~l~~H~~~V~~---vafsp~~~~LaSgs~-Dg~VrvWDl~~~~~~-  632 (743)
                      +-..                           .++....|...|..   +.+.-|...||+++. |+.|+|||+++.... 
T Consensus       175 R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~  254 (720)
T KOG0321|consen  175 RCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAY  254 (720)
T ss_pred             eccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeeccccccc
Confidence            6211                           11122344455555   555567889999988 999999999875431 


Q ss_pred             ------EEEEecC---CCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCe--eeEEEeccC------ceeeecCCCEEE
Q 004603          633 ------LRTFTGH---STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS--CAGVFKVCN------LMPIILKGCFIL  695 (743)
Q Consensus       633 ------l~~l~~h---~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~--~v~~~~~~~------~i~~s~~g~~l~  695 (743)
                            +..+..|   .-.+.+|+.+..|.+++|+|. |+.|++||+.+..  .+..+.++.      .-..++++++|+
T Consensus       255 r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCt-D~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~  333 (720)
T KOG0321|consen  255 RQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCT-DNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLL  333 (720)
T ss_pred             ccCCCcccCccCcccceeeeEEEEecCCCCeEEEEec-CCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEe
Confidence                  1122223   235778888888999998888 9999999998643  344444432      235779999999


Q ss_pred             EEecCCeEEEEe---------------cccceEEEEecCCCCEEEEEeCCCeEEEeCC
Q 004603          696 NSIFNCYLLLHR---------------IFLNLLSVSEWCNPDEISTSSWKDSCCSHRE  738 (743)
Q Consensus       696 sgs~Dg~I~vh~---------------~~v~~l~v~~~~~~~~laSgs~DG~V~iWd~  738 (743)
                      +|+.|....+|.               ..+..+.|.+.. ..-+++|+.|-+|++|+.
T Consensus       334 SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~-~t~v~TcSdD~~~kiW~l  390 (720)
T KOG0321|consen  334 SGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSA-TTPVATCSDDFRVKIWRL  390 (720)
T ss_pred             ccCCCcceeeeeecCccCChhhhhCcceEEEEEeecccc-CCCceeeccCcceEEEec
Confidence            999999988854               345566666554 567888899999999985

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.73  E-value=1.1e-16  Score=170.78  Aligned_cols=182  Identities=17%  Similarity=0.268  Sum_probs=156.0

Q ss_pred             CEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004603          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES  586 (743)
Q Consensus       507 ~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t  586 (743)
                      +|+++|+.|..|.+|..                   .+...+..+++|.+.|.+++|-.....+++++.|++|++|+++.
T Consensus       215 kylatgg~d~~v~Iw~~-------------------~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~  275 (479)
T KOG0299|consen  215 KYLATGGRDRHVQIWDC-------------------DTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQ  275 (479)
T ss_pred             cEEEecCCCceEEEecC-------------------cccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhH
Confidence            79999999999999944                   34466777999999999999988777899999999999999999


Q ss_pred             CeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEE
Q 004603          587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR  666 (743)
Q Consensus       587 ~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~Ir  666 (743)
                      ...+.++.||.+.|..|....-++.+.+|+.|+++++|++..  .....|.+|.+.+-|++|..+.  -|++|+.||.|.
T Consensus       276 ~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~e--esqlifrg~~~sidcv~~In~~--HfvsGSdnG~Ia  351 (479)
T KOG0299|consen  276 LSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPE--ESQLIFRGGEGSIDCVAFINDE--HFVSGSDNGSIA  351 (479)
T ss_pred             hHHHHHHhCCccceeeechhcccceEEeccccceeEEEeccc--cceeeeeCCCCCeeeEEEeccc--ceeeccCCceEE
Confidence            889999999999999998877677777777999999999943  3467888999999999999774  366999999999


Q ss_pred             EEECCCCeeeEEEecc----------------CceeeecCCCEEEEEecCCeEEEEecccc
Q 004603          667 YWSINNGSCAGVFKVC----------------NLMPIILKGCFILNSIFNCYLLLHRIFLN  711 (743)
Q Consensus       667 vWDl~tg~~v~~~~~~----------------~~i~~s~~g~~l~sgs~Dg~I~vh~~~v~  711 (743)
                      +|++.+.+++.+....                +.+...+....+++|+.+|.|++|.....
T Consensus       352 LWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g  412 (479)
T KOG0299|consen  352 LWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDG  412 (479)
T ss_pred             EeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCC
Confidence            9999999988877631                23566788899999999999999976543

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.73  E-value=4.6e-17  Score=161.47  Aligned_cols=189  Identities=21%  Similarity=0.313  Sum_probs=151.3

Q ss_pred             CCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcC--CCCEEEEEeCCCcEEEEE
Q 004603          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP--DGKLLATGGHDKKAVLWC  583 (743)
Q Consensus       506 ~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafsp--dg~~LaSgs~Dg~V~IWd  583 (743)
                      +.+|+++++|+.|-+|....+                 .+........|...|++|+|.|  -|-.|++|+.||+|.|.+
T Consensus        70 G~iLAScsYDgkVIiWke~~g-----------------~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~  132 (299)
T KOG1332|consen   70 GTILASCSYDGKVIIWKEENG-----------------RWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLT  132 (299)
T ss_pred             CcEeeEeecCceEEEEecCCC-----------------chhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEE
Confidence            689999999999999944332                 4556677788999999999999  456899999999999998


Q ss_pred             CCCC---eEEEEEcccCCCEEEEEEcCC---C-----------CEEEEEeCCCeEEEEECCCCCee-EEEEecCCCCeEE
Q 004603          584 TESF---TVKSTLEEHTQWITDVRFSPS---L-----------SRLATSSADRTVRVWDTENPDYS-LRTFTGHSTTVMS  645 (743)
Q Consensus       584 ~~t~---~~i~~l~~H~~~V~~vafsp~---~-----------~~LaSgs~Dg~VrvWDl~~~~~~-l~~l~~h~~~V~s  645 (743)
                      +++.   ........|.-.|++|+|.|.   |           ..|+||+.|..|+||+...+... -+++.+|.+.|..
T Consensus       133 ~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRD  212 (299)
T KOG1332|consen  133 YDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRD  212 (299)
T ss_pred             EcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhh
Confidence            8753   223445689999999999995   4           56999999999999999875432 2458999999999


Q ss_pred             EEEecCC---CcEEEEEeCCCcEEEEECCCC------eeeEEEecc-CceeeecCCCEEEEEecCCeEEEEecccc
Q 004603          646 LDFHPSK---EDLLCSCDNNSEIRYWSINNG------SCAGVFKVC-NLMPIILKGCFILNSIFNCYLLLHRIFLN  711 (743)
Q Consensus       646 l~fsp~g---~~lL~Sgs~Dg~IrvWDl~tg------~~v~~~~~~-~~i~~s~~g~~l~sgs~Dg~I~vh~~~v~  711 (743)
                      ++|+|.-   ...+++|+.||+|.||-.+..      +.++.|... -.+.++..|++|++++.|+.|++|...+.
T Consensus       213 VAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~  288 (299)
T KOG1332|consen  213 VAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENVD  288 (299)
T ss_pred             hhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCCC
Confidence            9999973   457899999999999987622      223333221 23678999999999999999999987654

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.73  E-value=3.5e-16  Score=178.26  Aligned_cols=219  Identities=17%  Similarity=0.219  Sum_probs=176.4

Q ss_pred             ceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEE
Q 004603          482 KSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESC  561 (743)
Q Consensus       482 ~s~~~fs~dg~~~l~~~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~si  561 (743)
                      ...+.|.++|               .||++++.|+.|++|....+.                  ..-.++.-|...|.+|
T Consensus        16 ~t~i~~d~~g---------------efi~tcgsdg~ir~~~~~sd~------------------e~P~ti~~~g~~v~~i   62 (933)
T KOG1274|consen   16 LTLICYDPDG---------------EFICTCGSDGDIRKWKTNSDE------------------EEPETIDISGELVSSI   62 (933)
T ss_pred             eEEEEEcCCC---------------CEEEEecCCCceEEeecCCcc------------------cCCchhhccCceeEEE
Confidence            5566666666               699999999999999555442                  1111222266778888


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCC
Q 004603          562 HFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHST  641 (743)
Q Consensus       562 afspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~  641 (743)
                      +.  ++++|++|+.+++|.+|...+++.-..+...+-++.+++|+-+|.++|.|+.|-.|++-++.+... ..++++|..
T Consensus        63 a~--~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~-~~~lrgh~a  139 (933)
T KOG1274|consen   63 AC--YSNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQ-EKVLRGHDA  139 (933)
T ss_pred             ee--cccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccch-heeecccCC
Confidence            87  455999999999999999998776656666678899999999999999999999999999988665 788999999


Q ss_pred             CeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEecc------------CceeeecCCCEEEEEecCCeEEEEec-
Q 004603          642 TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVC------------NLMPIILKGCFILNSIFNCYLLLHRI-  708 (743)
Q Consensus       642 ~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~------------~~i~~s~~g~~l~sgs~Dg~I~vh~~-  708 (743)
                      +|.+|.|+|.+. +||+.+.||.|+|||+.++.+..++.+.            ....|+|+|..++....|+.|++.+. 
T Consensus       140 pVl~l~~~p~~~-fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~  218 (933)
T KOG1274|consen  140 PVLQLSYDPKGN-FLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRK  218 (933)
T ss_pred             ceeeeeEcCCCC-EEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccC
Confidence            999999999976 7888888999999999999887777642            23679999988888888999988321 


Q ss_pred             ---------------ccceEEEEecCCCCEEEEEeCCCeEEEeCCC
Q 004603          709 ---------------FLNLLSVSEWCNPDEISTSSWKDSCCSHREL  739 (743)
Q Consensus       709 ---------------~v~~l~v~~~~~~~~laSgs~DG~V~iWd~~  739 (743)
                                     ....+.|++.  +.|||+++-||.|.|||-.
T Consensus       219 ~we~~f~Lr~~~~ss~~~~~~wsPn--G~YiAAs~~~g~I~vWnv~  262 (933)
T KOG1274|consen  219 GWELQFKLRDKLSSSKFSDLQWSPN--GKYIAASTLDGQILVWNVD  262 (933)
T ss_pred             CceeheeecccccccceEEEEEcCC--CcEEeeeccCCcEEEEecc
Confidence                           1234444444  8899999999999999976

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.72  E-value=5.1e-16  Score=165.58  Aligned_cols=200  Identities=16%  Similarity=0.261  Sum_probs=161.3

Q ss_pred             ccccccCCCCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEE
Q 004603          471 RPTLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQL  550 (743)
Q Consensus       471 ~~~l~~~~s~~~s~~~fs~dg~~~l~~~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~  550 (743)
                      .++..+.....++++.|||..               .++.+++.|+++++|-.                 ++.....+..
T Consensus       205 DaNa~~ps~~~I~sv~FHp~~---------------plllvaG~d~~lrifqv-----------------DGk~N~~lqS  252 (514)
T KOG2055|consen  205 DANAAHPSHGGITSVQFHPTA---------------PLLLVAGLDGTLRIFQV-----------------DGKVNPKLQS  252 (514)
T ss_pred             ccccCCcCcCCceEEEecCCC---------------ceEEEecCCCcEEEEEe-----------------cCccChhhee
Confidence            445555556678888999866               58899999999999943                 3333445666


Q ss_pred             eeCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeEE--EEEcccC-CCEEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 004603          551 IPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVK--STLEEHT-QWITDVRFSPSLSRLATSSADRTVRVWDT  626 (743)
Q Consensus       551 l~~H~~~V~siafspdg~-~LaSgs~Dg~V~IWd~~t~~~i--~~l~~H~-~~V~~vafsp~~~~LaSgs~Dg~VrvWDl  626 (743)
                      +.-...+|.+++|.|+|. .+++++..+.++.||+.+.+..  ..+.++. ..+....+++++++|+..+..|.|.+.-.
T Consensus       253 ~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLha  332 (514)
T KOG2055|consen  253 IHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHA  332 (514)
T ss_pred             eeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehh
Confidence            666778899999999999 8999999999999999886543  2334443 34667778999999999999999999998


Q ss_pred             CCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEec-----cCceeeecCCCEEEEEecCC
Q 004603          627 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKV-----CNLMPIILKGCFILNSIFNC  701 (743)
Q Consensus       627 ~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~-----~~~i~~s~~g~~l~sgs~Dg  701 (743)
                      .++.. +.+++ -.+.|.+++|+.+++.++++| .+|.|.+||++...|++.+..     .+.++.+++|.|+++|+..|
T Consensus       333 kT~el-i~s~K-ieG~v~~~~fsSdsk~l~~~~-~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~G  409 (514)
T KOG2055|consen  333 KTKEL-ITSFK-IEGVVSDFTFSSDSKELLASG-GTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSG  409 (514)
T ss_pred             hhhhh-hheee-eccEEeeEEEecCCcEEEEEc-CCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcc
Confidence            88654 66666 568899999999998777555 488999999999999998874     35588889999999999999


Q ss_pred             eEEE
Q 004603          702 YLLL  705 (743)
Q Consensus       702 ~I~v  705 (743)
                      .|.|
T Consensus       410 iVNI  413 (514)
T KOG2055|consen  410 IVNI  413 (514)
T ss_pred             eEEE
Confidence            9998

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.71  E-value=7.3e-16  Score=156.31  Aligned_cols=225  Identities=21%  Similarity=0.280  Sum_probs=164.0

Q ss_pred             CCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCe
Q 004603          479 ASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKV  558 (743)
Q Consensus       479 s~~~s~~~fs~dg~~~l~~~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V  558 (743)
                      ...++.+.|-|-.+              .+..++|+|.++++|+...                   ....-.|+ -.+.|
T Consensus       101 ky~iss~~WyP~Dt--------------GmFtssSFDhtlKVWDtnT-------------------lQ~a~~F~-me~~V  146 (397)
T KOG4283|consen  101 KYAISSAIWYPIDT--------------GMFTSSSFDHTLKVWDTNT-------------------LQEAVDFK-MEGKV  146 (397)
T ss_pred             eeeeeeeEEeeecC--------------ceeecccccceEEEeeccc-------------------ceeeEEee-cCcee
Confidence            34555666766444              4678899999999994433                   22222222 24568


Q ss_pred             EEEEEcC---CCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCE-EEEEeCCCeEEEEECCCCCeeEE
Q 004603          559 ESCHFSP---DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSR-LATSSADRTVRVWDTENPDYSLR  634 (743)
Q Consensus       559 ~siafsp---dg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~-LaSgs~Dg~VrvWDl~~~~~~l~  634 (743)
                      ++-+|+|   .-.+||+|..|-.|++.|+.+|.+-.++.||+..|.+|.|+|...+ |+||+.||.||+||++....|+.
T Consensus       147 YshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~  226 (397)
T KOG4283|consen  147 YSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFR  226 (397)
T ss_pred             ehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeE
Confidence            8888888   3458889999999999999999999999999999999999997654 68999999999999997655555


Q ss_pred             EEe--------------cCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeE-EEe----------------cc-
Q 004603          635 TFT--------------GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG-VFK----------------VC-  682 (743)
Q Consensus       635 ~l~--------------~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~-~~~----------------~~-  682 (743)
                      ++.              .|.+.|.+++|..++.+++ +++.|..+++|+..+|+..- .+.                .+ 
T Consensus       227 ~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~-~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s  305 (397)
T KOG4283|consen  227 VLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLA-SCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQSMDS  305 (397)
T ss_pred             EeecccCccCccccccccccceeeeeeecccchhhh-hccCccceEEeecccCcccccccccccccccccceEEEeeccc
Confidence            543              5667899999999987555 88889999999998875321 110                01 


Q ss_pred             Cceeeec--CCCEEEEEecCCeEEEEecccceEEEEecC-CCCEEEEEeCCCeEEEeCC
Q 004603          683 NLMPIIL--KGCFILNSIFNCYLLLHRIFLNLLSVSEWC-NPDEISTSSWKDSCCSHRE  738 (743)
Q Consensus       683 ~~i~~s~--~g~~l~sgs~Dg~I~vh~~~v~~l~v~~~~-~~~~laSgs~DG~V~iWd~  738 (743)
                      ..+.+.|  ++-+|++......|+.|+...+.+..+... +-...++|..|+.+..|-.
T Consensus       306 ~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p  364 (397)
T KOG4283|consen  306 DVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWSP  364 (397)
T ss_pred             ceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhccccCCccccccc
Confidence            1122333  333566666677788887776665555443 2467899999999999964

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.71  E-value=3.2e-16  Score=156.86  Aligned_cols=189  Identities=16%  Similarity=0.178  Sum_probs=152.2

Q ss_pred             EEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEE--EEcccCCCEEEEEEcC-CCCEEEEEeCCCeEEEEE
Q 004603          549 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS--TLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWD  625 (743)
Q Consensus       549 ~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~--~l~~H~~~V~~vafsp-~~~~LaSgs~Dg~VrvWD  625 (743)
                      +.+.+|..+|.+|+|+.+|+.|++|+.|++++||+++..+...  ...+|++.|-.++|+| ...+|++++.|++|++||
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd   93 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD   93 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence            5567899999999999999999999999999999998764333  4478999999999998 578999999999999999


Q ss_pred             CCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEec---cCceeeecCCCEEEEEecCCe
Q 004603          626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKV---CNLMPIILKGCFILNSIFNCY  702 (743)
Q Consensus       626 l~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~---~~~i~~s~~g~~l~sgs~Dg~  702 (743)
                      ++.+++ +...... ..-.-++|+|+|.+ ++.++.|..|.+.|.++.+.+....-   ...+++..++.+++.....|+
T Consensus        94 ~r~~k~-~~~i~~~-~eni~i~wsp~g~~-~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~  170 (313)
T KOG1407|consen   94 IRSGKC-TARIETK-GENINITWSPDGEY-IAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGC  170 (313)
T ss_pred             eccCcE-EEEeecc-CcceEEEEcCCCCE-EEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCce
Confidence            999776 4444322 33345899999884 55788888999999999887765543   244677777777777777788


Q ss_pred             EEEE------------ecccceEEEEecCCCCEEEEEeCCCeEEEeCCCc
Q 004603          703 LLLH------------RIFLNLLSVSEWCNPDEISTSSWKDSCCSHRELY  740 (743)
Q Consensus       703 I~vh------------~~~v~~l~v~~~~~~~~laSgs~DG~V~iWd~~~  740 (743)
                      |.|-            .....++++.+++++.++|+|+.|..|-+||-.=
T Consensus       171 v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~E  220 (313)
T KOG1407|consen  171 VEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDE  220 (313)
T ss_pred             EEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhH
Confidence            7772            2236788888888899999999999999998653

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.71  E-value=3.3e-16  Score=166.50  Aligned_cols=186  Identities=18%  Similarity=0.230  Sum_probs=147.9

Q ss_pred             CCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEC
Q 004603          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCT  584 (743)
Q Consensus       506 ~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafsp-dg~~LaSgs~Dg~V~IWd~  584 (743)
                      .++|++||.|.+|++|+...+                   ++..++..|.+.|.++.|+| ...+|++|+.|++|++.|+
T Consensus       256 ~nVLaSgsaD~TV~lWD~~~g-------------------~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~  316 (463)
T KOG0270|consen  256 RNVLASGSADKTVKLWDVDTG-------------------KPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDC  316 (463)
T ss_pred             ceeEEecCCCceEEEEEcCCC-------------------CcceehhhcCCceeEEEecCCCceEEEeccccceEEeeec
Confidence            479999999999999966554                   56777888999999999999 6779999999999999999


Q ss_pred             CCCeEEEEEcccCCCEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCC
Q 004603          585 ESFTVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS  663 (743)
Q Consensus       585 ~t~~~i~~l~~H~~~V~~vafsp~-~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg  663 (743)
                      +........-.-.+.|-.++|+|. ...++++..||+|+-+|+|....++.++..|.+.|.+|++++..+.++++++.|+
T Consensus       317 R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~  396 (463)
T KOG0270|consen  317 RDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDK  396 (463)
T ss_pred             cCccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccc
Confidence            853222222223567999999995 5677888899999999999998899999999999999999999999999999999


Q ss_pred             cEEEEECCCCee--e--EEEecc--CceeeecCCC-EEEEEecCCeEEEEeccc
Q 004603          664 EIRYWSINNGSC--A--GVFKVC--NLMPIILKGC-FILNSIFNCYLLLHRIFL  710 (743)
Q Consensus       664 ~IrvWDl~tg~~--v--~~~~~~--~~i~~s~~g~-~l~sgs~Dg~I~vh~~~v  710 (743)
                      .|++|++.....  +  +.++..  .++.+.|+.. +++.|+..+.++||+...
T Consensus       397 ~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~  450 (463)
T KOG0270|consen  397 VVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFT  450 (463)
T ss_pred             eEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeeccc
Confidence            999999874332  2  222222  2233445444 467788888899998754

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.71  E-value=1.1e-16  Score=171.30  Aligned_cols=218  Identities=18%  Similarity=0.178  Sum_probs=166.0

Q ss_pred             ccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 004603          502 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVL  581 (743)
Q Consensus       502 l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~I  581 (743)
                      +....+-|.+|+.-.++.+|+....                 +......+....-.+++++.+||.++.++++.||.|.|
T Consensus       473 L~pdgrtLivGGeastlsiWDLAap-----------------TprikaeltssapaCyALa~spDakvcFsccsdGnI~v  535 (705)
T KOG0639|consen  473 LLPDGRTLIVGGEASTLSIWDLAAP-----------------TPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAV  535 (705)
T ss_pred             ecCCCceEEeccccceeeeeeccCC-----------------CcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEE
Confidence            4445566777777788888855433                 22223333444455788999999999999999999999


Q ss_pred             EECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeC
Q 004603          582 WCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN  661 (743)
Q Consensus       582 Wd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~  661 (743)
                      ||+.+...++.|.||++.+.||.++++|..|-||+-|.+||.||+++++. +... ...+-|.+|-++|.+++++ .|-+
T Consensus       536 wDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrq-lqqh-dF~SQIfSLg~cP~~dWla-vGMe  612 (705)
T KOG0639|consen  536 WDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQ-LQQH-DFSSQIFSLGYCPTGDWLA-VGME  612 (705)
T ss_pred             EEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhh-hhhh-hhhhhheecccCCCcccee-eecc
Confidence            99999999999999999999999999999999999999999999998664 2211 2347799999999988554 7888


Q ss_pred             CCcEEEEECCCCeeeEEEeccCc----eeeecCCCEEEEEecCCeEEEEeccc-----------ceEEEEecCCCCEEEE
Q 004603          662 NSEIRYWSINNGSCAGVFKVCNL----MPIILKGCFILNSIFNCYLLLHRIFL-----------NLLSVSEWCNPDEIST  726 (743)
Q Consensus       662 Dg~IrvWDl~tg~~v~~~~~~~~----i~~s~~g~~l~sgs~Dg~I~vh~~~v-----------~~l~v~~~~~~~~laS  726 (743)
                      ++.|.|-.....+ ...+..|..    +.|.+.|.|+++.+.|+.+..|+..-           .+++.....+..+|+|
T Consensus       613 ns~vevlh~skp~-kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~SsVlsCDIS~ddkyIVT  691 (705)
T KOG0639|consen  613 NSNVEVLHTSKPE-KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISFDDKYIVT  691 (705)
T ss_pred             cCcEEEEecCCcc-ceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeeccccCcceeeeeccCceEEEe
Confidence            8888777765433 233333433    45789999999999999999986542           2333344445789999


Q ss_pred             EeCCCeEEEeCCCc
Q 004603          727 SSWKDSCCSHRELY  740 (743)
Q Consensus       727 gs~DG~V~iWd~~~  740 (743)
                      |+.|....||.-.|
T Consensus       692 GSGdkkATVYeV~Y  705 (705)
T KOG0639|consen  692 GSGDKKATVYEVIY  705 (705)
T ss_pred             cCCCcceEEEEEeC
Confidence            99998888875443

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.71  E-value=5.8e-16  Score=156.75  Aligned_cols=193  Identities=20%  Similarity=0.291  Sum_probs=150.5

Q ss_pred             CceeeeEEEee-CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE-EEEE-----cccCCCEEEEEEcC--CCCEE
Q 004603          542 GFTFTEFQLIP-ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV-KSTL-----EEHTQWITDVRFSP--SLSRL  612 (743)
Q Consensus       542 ~~~~~~~~~l~-~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~-i~~l-----~~H~~~V~~vafsp--~~~~L  612 (743)
                      ..++..+..+. .+-+.|.||.|.|++..+++-. |..|.+|++..... +..+     .+|....++-+|+|  +++.+
T Consensus       109 ~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv  187 (370)
T KOG1007|consen  109 SSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQV  187 (370)
T ss_pred             cchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceE
Confidence            34456666665 6777999999999999988876 88999999987654 3333     24566788899999  68888


Q ss_pred             EEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCC-eeeEEEeccCcee----e
Q 004603          613 ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFKVCNLMP----I  687 (743)
Q Consensus       613 aSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg-~~v~~~~~~~~i~----~  687 (743)
                      ++.+ |++++.||+|+..+....-..|...|.+++|+|+..++|++|+.||.|||||.|.- ..+.++.+|....    |
T Consensus       188 ~tt~-d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRf  266 (370)
T KOG1007|consen  188 ATTS-DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRF  266 (370)
T ss_pred             EEeC-CCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEe
Confidence            8765 99999999998765444555788889999999999999999999999999999964 5678888887644    3


Q ss_pred             ec-CCCEEEEEecCCeEEE-------------------------------------------EecccceEEEEecCCCCE
Q 004603          688 IL-KGCFILNSIFNCYLLL-------------------------------------------HRIFLNLLSVSEWCNPDE  723 (743)
Q Consensus       688 s~-~g~~l~sgs~Dg~I~v-------------------------------------------h~~~v~~l~v~~~~~~~~  723 (743)
                      .| ...+|++|+.|..|.+                                           |..++.+++|+.. ++-.
T Consensus       267 n~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsa-dPWi  345 (370)
T KOG1007|consen  267 NPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSA-DPWI  345 (370)
T ss_pred             cCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccC-CCee
Confidence            33 3457888999988887                                           3334556666654 3778


Q ss_pred             EEEEeCCCeEEEeC
Q 004603          724 ISTSSWKDSCCSHR  737 (743)
Q Consensus       724 laSgs~DG~V~iWd  737 (743)
                      +|+-++||+|.|=+
T Consensus       346 FASLSYDGRviIs~  359 (370)
T KOG1007|consen  346 FASLSYDGRVIISS  359 (370)
T ss_pred             EEEeccCceEEeec
Confidence            99999999998854

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.70  E-value=8.2e-16  Score=175.30  Aligned_cols=194  Identities=20%  Similarity=0.246  Sum_probs=158.7

Q ss_pred             CCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004603          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE  585 (743)
Q Consensus       506 ~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~  585 (743)
                      ...+++|+.+++|..+....+.                   +-..+...+-++.+++|+-+|+++|.||+|-.|++.++.
T Consensus        66 s~~f~~~s~~~tv~~y~fps~~-------------------~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~  126 (933)
T KOG1274|consen   66 SNHFLTGSEQNTVLRYKFPSGE-------------------EDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLD  126 (933)
T ss_pred             ccceEEeeccceEEEeeCCCCC-------------------ccceeeeeeccceEEEEecCCcEEEeecCceeEEEEecc
Confidence            4578899999999999665542                   122333445679999999999999999999999999999


Q ss_pred             CCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEec--------CCCCeEEEEEecCCCcEEE
Q 004603          586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG--------HSTTVMSLDFHPSKEDLLC  657 (743)
Q Consensus       586 t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~--------h~~~V~sl~fsp~g~~lL~  657 (743)
                      +.....++++|.+.|.+|.|+|.+.+||+.+.||.|+|||+.++.. ..++.+        ....++.++|+|++..+++
T Consensus       127 D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~-~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~  205 (933)
T KOG1274|consen  127 DSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGIL-SKTLTGVDKDNEFILSRICTRLAWHPKGGTLAV  205 (933)
T ss_pred             ccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchh-hhhcccCCccccccccceeeeeeecCCCCeEEe
Confidence            9999999999999999999999999999999999999999987653 343332        1345678999999877775


Q ss_pred             EEeCCCcEEEEECCCCeeeEEEecc------CceeeecCCCEEEEEecCCeEEEEecc----------cceEEEEecCC
Q 004603          658 SCDNNSEIRYWSINNGSCAGVFKVC------NLMPIILKGCFILNSIFNCYLLLHRIF----------LNLLSVSEWCN  720 (743)
Q Consensus       658 Sgs~Dg~IrvWDl~tg~~v~~~~~~------~~i~~s~~g~~l~sgs~Dg~I~vh~~~----------v~~l~v~~~~~  720 (743)
                      .+. |+.|++|+...++....+...      ..+.|+|+|.||++++.||.|.||+..          +.+++|.+.++
T Consensus       206 ~~~-d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~~~~~~~Vc~~aw~p~~n  283 (933)
T KOG1274|consen  206 PPV-DNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHERHEFKRAVCCEAWKPNAN  283 (933)
T ss_pred             ecc-CCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchhccccceeEEEecCCCCC
Confidence            554 889999999999888777642      336799999999999999999999877          55666666654

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.69  E-value=1.4e-15  Score=155.08  Aligned_cols=180  Identities=13%  Similarity=0.258  Sum_probs=142.0

Q ss_pred             CCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCC-CeEE-EEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004603          553 ASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTES-FTVK-STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP  629 (743)
Q Consensus       553 ~H~~~V~siafsp-dg~~LaSgs~Dg~V~IWd~~t-~~~i-~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~  629 (743)
                      .-.+.|.+|+||| ...+++.||.|++||+|++.. +..+ .....|.++|.+++|+.+|..+++|+.|+.+++||+.++
T Consensus        25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~  104 (347)
T KOG0647|consen   25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG  104 (347)
T ss_pred             CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence            3467799999999 666788999999999999976 2322 345679999999999999999999999999999999987


Q ss_pred             CeeEEEEecCCCCeEEEEEecCCC-cEEEEEeCCCcEEEEECCCCeeeEEEeccCc-eeeecCCCEEEEEecCCeEEEEe
Q 004603          630 DYSLRTFTGHSTTVMSLDFHPSKE-DLLCSCDNNSEIRYWSINNGSCAGVFKVCNL-MPIILKGCFILNSIFNCYLLLHR  707 (743)
Q Consensus       630 ~~~l~~l~~h~~~V~sl~fsp~g~-~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~~~-i~~s~~g~~l~sgs~Dg~I~vh~  707 (743)
                      .  +..+..|..+|.++.|-+... .+|++||.|++||+||+|....+.++..... .+....-..++++..++.|.+..
T Consensus       105 Q--~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vyn  182 (347)
T KOG0647|consen  105 Q--VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYN  182 (347)
T ss_pred             C--eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEE
Confidence            5  677888999999999987533 3789999999999999999988888876533 34444555677777787777754


Q ss_pred             cc----------------cceEEEEecCCCCEEEEEeCCCeEEEe
Q 004603          708 IF----------------LNLLSVSEWCNPDEISTSSWKDSCCSH  736 (743)
Q Consensus       708 ~~----------------v~~l~v~~~~~~~~laSgs~DG~V~iW  736 (743)
                      ..                +++++...  +....+-|+.+|+|-|.
T Consensus       183 L~n~~te~k~~~SpLk~Q~R~va~f~--d~~~~alGsiEGrv~iq  225 (347)
T KOG0647|consen  183 LENPPTEFKRIESPLKWQTRCVACFQ--DKDGFALGSIEGRVAIQ  225 (347)
T ss_pred             cCCCcchhhhhcCcccceeeEEEEEe--cCCceEeeeecceEEEE
Confidence            42                23333333  35566999999998875

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.68  E-value=1.1e-15  Score=156.54  Aligned_cols=192  Identities=17%  Similarity=0.186  Sum_probs=139.7

Q ss_pred             EEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe-----EEEEEcccCCCEEEEEEcCCCCEE-EEEeCCCeE
Q 004603          548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT-----VKSTLEEHTQWITDVRFSPSLSRL-ATSSADRTV  621 (743)
Q Consensus       548 ~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~-----~i~~l~~H~~~V~~vafsp~~~~L-aSgs~Dg~V  621 (743)
                      +..+++|.+.|+|++|+.||++|+|++.|++|+||+++...     +++.-. .-+..+.|+|.||.+-+ +++-...++
T Consensus        79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nv-e~dhpT~V~FapDc~s~vv~~~~g~~l  157 (420)
T KOG2096|consen   79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNV-EYDHPTRVVFAPDCKSVVVSVKRGNKL  157 (420)
T ss_pred             hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccc-cCCCceEEEECCCcceEEEEEccCCEE
Confidence            46688999999999999999999999999999999998632     111111 12246789999987655 455557789


Q ss_pred             EEEECCCCC---eeEE--------EEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEecc----Ccee
Q 004603          622 RVWDTENPD---YSLR--------TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVC----NLMP  686 (743)
Q Consensus       622 rvWDl~~~~---~~l~--------~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~----~~i~  686 (743)
                      ++|.+...+   .+..        .-+.|.-.|.++-.... ..++++|+.|..|.+||++ |+.+..+...    ...+
T Consensus       158 ~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~-~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aa  235 (420)
T KOG2096|consen  158 CVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGN-AKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAA  235 (420)
T ss_pred             EEEEeeecccCCCCcccccccccccchhcccceEEEeecCC-ceEEEEecCCCcEEEEecC-Cceeeeecccccccccee
Confidence            999875322   1111        11234445555555444 4578899999999999999 8888777643    3367


Q ss_pred             eecCCCEEEEEecCCeEEEEecc--------------------cceEEEEecCCCCEEEEEeCCCeEEEeCCCccc
Q 004603          687 IILKGCFILNSIFNCYLLLHRIF--------------------LNLLSVSEWCNPDEISTSSWKDSCCSHRELYLY  742 (743)
Q Consensus       687 ~s~~g~~l~sgs~Dg~I~vh~~~--------------------v~~l~v~~~~~~~~laSgs~DG~V~iWd~~~~~  742 (743)
                      ++|+|+|+++++.---|++|...                    ..++.+++..+...+++.+.||++++||.+..|
T Consensus       236 vSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY  311 (420)
T KOG2096|consen  236 VSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRY  311 (420)
T ss_pred             eCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceE
Confidence            99999999999988778886432                    123444555557899999999999999988766

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.68  E-value=1.2e-15  Score=167.84  Aligned_cols=222  Identities=14%  Similarity=0.149  Sum_probs=159.1

Q ss_pred             CCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004603          505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT  584 (743)
Q Consensus       505 ~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~  584 (743)
                      ..++|+.+..||.|.+++......      +       .....+.....|...|.++.|-|....|++++.|.++++||+
T Consensus        63 ~eHiLavadE~G~i~l~dt~~~~f------r-------~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdv  129 (720)
T KOG0321|consen   63 KEHILAVADEDGGIILFDTKSIVF------R-------LEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDV  129 (720)
T ss_pred             ccceEEEecCCCceeeecchhhhc------c-------hhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeee
Confidence            357899999999999994432210      0       011123455689999999999996678999999999999999


Q ss_pred             CCCeEEEE--EcccCCCEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCe------e--------------------EEE
Q 004603          585 ESFTVKST--LEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDY------S--------------------LRT  635 (743)
Q Consensus       585 ~t~~~i~~--l~~H~~~V~~vafsp~-~~~LaSgs~Dg~VrvWDl~~~~~------~--------------------l~~  635 (743)
                      ...+++..  +.||++.|.+++|+|. ...|++|+.||.|.|||++....      +                    ++.
T Consensus       130 k~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k  209 (720)
T KOG0321|consen  130 KTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRK  209 (720)
T ss_pred             ccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccc
Confidence            99888776  8999999999999995 66889999999999999874331      0                    111


Q ss_pred             EecCCCCeEE---EEEecCCCcEEEEEeC-CCcEEEEECCCCeeeEEEe---------------ccCceeeecCCCEEEE
Q 004603          636 FTGHSTTVMS---LDFHPSKEDLLCSCDN-NSEIRYWSINNGSCAGVFK---------------VCNLMPIILKGCFILN  696 (743)
Q Consensus       636 l~~h~~~V~s---l~fsp~g~~lL~Sgs~-Dg~IrvWDl~tg~~v~~~~---------------~~~~i~~s~~g~~l~s  696 (743)
                      .+.|...|.+   +.+..|.. .|++++. |+.|+||||++..+.....               +...+.....|.||++
T Consensus       210 ~kA~s~ti~ssvTvv~fkDe~-tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~A  288 (720)
T KOG0321|consen  210 WKAASNTIFSSVTVVLFKDES-TLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFA  288 (720)
T ss_pred             cccccCceeeeeEEEEEeccc-eeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEE
Confidence            2234434444   44444544 6667776 9999999999765432211               1233455567899999


Q ss_pred             EecCCeEEEEecccce--------------EE--EEecCCCCEEEEEeCCCeEEEeCCCc
Q 004603          697 SIFNCYLLLHRIFLNL--------------LS--VSEWCNPDEISTSSWKDSCCSHRELY  740 (743)
Q Consensus       697 gs~Dg~I~vh~~~v~~--------------l~--v~~~~~~~~laSgs~DG~V~iWd~~~  740 (743)
                      .+.|+.|.+|+.....              +.  -....++.++++|++|+.+++|....
T Consensus       289 sCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~  348 (720)
T KOG0321|consen  289 SCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSS  348 (720)
T ss_pred             EecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecC
Confidence            9999999998764321              11  12234478999999999999997653

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.68  E-value=1e-15  Score=163.15  Aligned_cols=241  Identities=12%  Similarity=0.093  Sum_probs=183.2

Q ss_pred             ccccccCCCCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEE
Q 004603          471 RPTLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQL  550 (743)
Q Consensus       471 ~~~l~~~~s~~~s~~~fs~dg~~~l~~~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~  550 (743)
                      ..++.......+.++.|+|...             ..+|++|..-|.|-+|+....               ......+..
T Consensus       178 ~~~v~kv~~~Rit~l~fHPt~~-------------~~lva~GdK~G~VG~Wn~~~~---------------~~d~d~v~~  229 (498)
T KOG4328|consen  178 ILNVAKVTDRRITSLAFHPTEN-------------RKLVAVGDKGGQVGLWNFGTQ---------------EKDKDGVYL  229 (498)
T ss_pred             ecceeEecccceEEEEecccCc-------------ceEEEEccCCCcEEEEecCCC---------------CCccCceEE
Confidence            3345555667888899999553             368999999999999977421               122244667


Q ss_pred             eeCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeEEE--EEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 004603          551 IPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKS--TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE  627 (743)
Q Consensus       551 l~~H~~~V~siafsp-dg~~LaSgs~Dg~V~IWd~~t~~~i~--~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~  627 (743)
                      +..|..+|.++.|+| +...|++.|.||+|++-|+++.....  .+......++.+.|+.+...++.+..=|.+.+||.+
T Consensus       230 f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R  309 (498)
T KOG4328|consen  230 FTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLR  309 (498)
T ss_pred             eccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEee
Confidence            889999999999999 56689999999999999998754332  332244567788888877777777777799999999


Q ss_pred             CCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCee-----eEEEec---cCceeeecCCCEEEEEec
Q 004603          628 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-----AGVFKV---CNLMPIILKGCFILNSIF  699 (743)
Q Consensus       628 ~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~-----v~~~~~---~~~i~~s~~g~~l~sgs~  699 (743)
                      ++......+.-|...|++|+++|..+++|++|+.|++++|||+|.-..     +..+..   ..+..|+|.+..|++.+.
T Consensus       310 ~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~  389 (498)
T KOG4328|consen  310 TDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQ  389 (498)
T ss_pred             cCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeecc
Confidence            988767777789999999999999999999999999999999986332     233322   244779999999999999


Q ss_pred             CCeEEEEeccc---------------------ceEEEEecCCCCEEEEEeCCCeEEEeCCC
Q 004603          700 NCYLLLHRIFL---------------------NLLSVSEWCNPDEISTSSWKDSCCSHREL  739 (743)
Q Consensus       700 Dg~I~vh~~~v---------------------~~l~v~~~~~~~~laSgs~DG~V~iWd~~  739 (743)
                      |+.|+||+...                     +.+...+..+..+|+.|-.-..|-|+|..
T Consensus       390 D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~  450 (498)
T KOG4328|consen  390 DNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGN  450 (498)
T ss_pred             CCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCC
Confidence            99999988741                     11222223345688888888888888754

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.67  E-value=2.5e-14  Score=158.79  Aligned_cols=233  Identities=14%  Similarity=0.203  Sum_probs=178.0

Q ss_pred             CceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCC-CCCeE
Q 004603          481 SKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAS-TSKVE  559 (743)
Q Consensus       481 ~~s~~~fs~dg~~~l~~~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H-~~~V~  559 (743)
                      .++.+-|.|.+..+++.+...     +.||.+-.|++|++|....+                  +-....+.++ .+.|.
T Consensus        17 rcrf~d~~Ps~I~slA~s~kS-----~~lAvsRt~g~IEiwN~~~~------------------w~~~~vi~g~~drsIE   73 (691)
T KOG2048|consen   17 RCRFVDYKPSEIVSLAYSHKS-----NQLAVSRTDGNIEIWNLSNN------------------WFLEPVIHGPEDRSIE   73 (691)
T ss_pred             EEEEEeeeccceEEEEEeccC-----CceeeeccCCcEEEEccCCC------------------ceeeEEEecCCCCcee
Confidence            455566777777666665543     66999999999999965443                  1233344444 46799


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeE-EEEec
Q 004603          560 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL-RTFTG  638 (743)
Q Consensus       560 siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l-~~l~~  638 (743)
                      +++|++ +..|++.+.+|+|.-||+.+++.+..+....+.|++++.+|.+..++.|+.||.+..+++..+.... +.|..
T Consensus        74 ~L~W~e-~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~r  152 (691)
T KOG2048|consen   74 SLAWAE-GGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMR  152 (691)
T ss_pred             eEEEcc-CCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeeccc
Confidence            999995 5567788889999999999999999999999999999999999999999999988888887655322 23444


Q ss_pred             CCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEec--------cCceeee---cCCCEEEEEecCCeEEEEe
Q 004603          639 HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKV--------CNLMPII---LKGCFILNSIFNCYLLLHR  707 (743)
Q Consensus       639 h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~--------~~~i~~s---~~g~~l~sgs~Dg~I~vh~  707 (743)
                      .++.|.+|+|+|++.. +++|+.||.|++||..++..++....        ...+.++   .....|++|..-|+|++|+
T Consensus       153 q~sRvLslsw~~~~~~-i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd  231 (691)
T KOG2048|consen  153 QKSRVLSLSWNPTGTK-IAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWD  231 (691)
T ss_pred             ccceEEEEEecCCccE-EEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEc
Confidence            5689999999999864 56999999999999999887763321        2233333   3556799999999999987


Q ss_pred             ccc------------ceEEEEecCCCCEEEEEeCCCeEEEeCC
Q 004603          708 IFL------------NLLSVSEWCNPDEISTSSWKDSCCSHRE  738 (743)
Q Consensus       708 ~~v------------~~l~v~~~~~~~~laSgs~DG~V~iWd~  738 (743)
                      ...            .++++....++.+++++|.|++|..+..
T Consensus       232 ~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~  274 (691)
T KOG2048|consen  232 SIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSL  274 (691)
T ss_pred             ccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEe
Confidence            643            3455555555789999999999988743

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.67  E-value=6.2e-14  Score=147.96  Aligned_cols=209  Identities=10%  Similarity=0.040  Sum_probs=147.7

Q ss_pred             EEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEE-eCCCcEEEEECCC
Q 004603          508 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATG-GHDKKAVLWCTES  586 (743)
Q Consensus       508 ~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSg-s~Dg~V~IWd~~t  586 (743)
                      ++++++.|+.|++|+...+                   .....+..+.. +..++|+|+++.++++ +.|+.|++||+++
T Consensus        45 l~~~~~~~~~v~~~d~~~~-------------------~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~  104 (300)
T TIGR03866        45 LYVCASDSDTIQVIDLATG-------------------EVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIET  104 (300)
T ss_pred             EEEEECCCCeEEEEECCCC-------------------cEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCC
Confidence            4467778899999965432                   12233333333 5678999999877654 5689999999998


Q ss_pred             CeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCC-eEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcE
Q 004603          587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADR-TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI  665 (743)
Q Consensus       587 ~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg-~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~I  665 (743)
                      .+.+..+.. ...+.+++|+|++.++++++.++ .+++||.++... +..+. ....+.+++|+|++..+++++..++.|
T Consensus       105 ~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~-~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v  181 (300)
T TIGR03866       105 RKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEI-VDNVL-VDQRPRFAEFTADGKELWVSSEIGGTV  181 (300)
T ss_pred             CeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeE-EEEEE-cCCCccEEEECCCCCEEEEEcCCCCEE
Confidence            887777753 33468899999999999888765 577889887554 33332 233567899999998777777789999


Q ss_pred             EEEECCCCeeeEEEecc-----------CceeeecCCCEEEEE-ecCCeEEEEeccc-----------ceEEEEecCCCC
Q 004603          666 RYWSINNGSCAGVFKVC-----------NLMPIILKGCFILNS-IFNCYLLLHRIFL-----------NLLSVSEWCNPD  722 (743)
Q Consensus       666 rvWDl~tg~~v~~~~~~-----------~~i~~s~~g~~l~sg-s~Dg~I~vh~~~v-----------~~l~v~~~~~~~  722 (743)
                      ++||+++++++..+..+           ..+.+++++.+++.+ +.++.+.+|+...           ....+.+..++.
T Consensus       182 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~g~  261 (300)
T TIGR03866       182 SVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLVGQRVWQLAFTPDEK  261 (300)
T ss_pred             EEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEeCCCcceEEECCCCC
Confidence            99999999887766421           236688999986554 4566788776431           112233344466


Q ss_pred             EEEEE-eCCCeEEEeCCC
Q 004603          723 EISTS-SWKDSCCSHREL  739 (743)
Q Consensus       723 ~laSg-s~DG~V~iWd~~  739 (743)
                      +|+++ +.+|.|++||..
T Consensus       262 ~l~~~~~~~~~i~v~d~~  279 (300)
T TIGR03866       262 YLLTTNGVSNDVSVIDVA  279 (300)
T ss_pred             EEEEEcCCCCeEEEEECC
Confidence            77776 569999999865

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.66  E-value=8.9e-15  Score=149.85  Aligned_cols=244  Identities=16%  Similarity=0.160  Sum_probs=167.4

Q ss_pred             ccccCCCCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCC------------CCccc------
Q 004603          473 TLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADP------------RDRVG------  534 (743)
Q Consensus       473 ~l~~~~s~~~s~~~fs~dg~~~l~~~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~------------~~~~~------  534 (743)
                      +....++..++++.|+.||               ..+++++.|+.|++|+..+-...            ....+      
T Consensus        80 ~~LKgH~~~vt~~~FsSdG---------------K~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc  144 (420)
T KOG2096|consen   80 SVLKGHKKEVTDVAFSSDG---------------KKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDC  144 (420)
T ss_pred             hhhhccCCceeeeEEcCCC---------------ceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCc
Confidence            3445677888899999988               47899999999999966543210            00000      


Q ss_pred             --cccccCCCceeeeEE--------------------EeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEE
Q 004603          535 --RSAEVGKGFTFTEFQ--------------------LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKST  592 (743)
Q Consensus       535 --~~~~~~~~~~~~~~~--------------------~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~  592 (743)
                        -+.....+.++-.++                    .-+-|...|..+-....+.+|++++.|.+|.||+++ |+.+..
T Consensus       145 ~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~  223 (420)
T KOG2096|consen  145 KSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQS  223 (420)
T ss_pred             ceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeee
Confidence              000111111111111                    112355566667777788999999999999999998 888888


Q ss_pred             EcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCC---CC----eeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcE
Q 004603          593 LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN---PD----YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI  665 (743)
Q Consensus       593 l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~---~~----~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~I  665 (743)
                      +......-+..+.+|+|++|++++..--|+||.+--   +.    ..+..++||.+.|..++|+++.. -+++.+.||++
T Consensus       224 idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~-r~vtvSkDG~w  302 (420)
T KOG2096|consen  224 IDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSST-RAVTVSKDGKW  302 (420)
T ss_pred             eccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcc-eeEEEecCCcE
Confidence            877777778889999999999999999999999632   11    12567889999999999999976 45599999999


Q ss_pred             EEEECCC-------CeeeEEEec--------cCceeeecCCCEEEEEecCCeEEE---------------EecccceEEE
Q 004603          666 RYWSINN-------GSCAGVFKV--------CNLMPIILKGCFILNSIFNCYLLL---------------HRIFLNLLSV  715 (743)
Q Consensus       666 rvWDl~t-------g~~v~~~~~--------~~~i~~s~~g~~l~sgs~Dg~I~v---------------h~~~v~~l~v  715 (743)
                      ||||++-       .+.+++...        +-.+.++|.|..|+..... .+.+               |...+..++|
T Consensus       303 riwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs-~l~~~~se~g~~~~~~e~~h~~~Is~is~  381 (420)
T KOG2096|consen  303 RIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGS-DLKVFASEDGKDYPELEDIHSTTISSISY  381 (420)
T ss_pred             EEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCC-ceEEEEcccCccchhHHHhhcCceeeEEe
Confidence            9999862       122222211        1236688888887765432 2332               6666677777


Q ss_pred             EecCCCCEEEEEeCCCeEEEeC
Q 004603          716 SEWCNPDEISTSSWKDSCCSHR  737 (743)
Q Consensus       716 ~~~~~~~~laSgs~DG~V~iWd  737 (743)
                      +++  +.++++|| |..|++..
T Consensus       382 ~~~--g~~~atcG-dr~vrv~~  400 (420)
T KOG2096|consen  382 SSD--GKYIATCG-DRYVRVIR  400 (420)
T ss_pred             cCC--CcEEeeec-ceeeeeec
Confidence            665  67888887 55666654

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.64  E-value=7.9e-15  Score=156.93  Aligned_cols=183  Identities=21%  Similarity=0.320  Sum_probs=149.6

Q ss_pred             CCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004603          505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT  584 (743)
Q Consensus       505 ~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~  584 (743)
                      .+.||+.|...+++.+|....+                   ..+..+.+|--.|+|+.|+-||.+|+|||.||.|.+|++
T Consensus        92 ~G~~l~ag~i~g~lYlWelssG-------------------~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l  152 (476)
T KOG0646|consen   92 LGYFLLAGTISGNLYLWELSSG-------------------ILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLL  152 (476)
T ss_pred             CceEEEeecccCcEEEEEeccc-------------------cHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEE
Confidence            3478998889999999955444                   445566789999999999999999999999999999976


Q ss_pred             C---------CCeEEEEEcccCCCEEEEEEcCC--CCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCC
Q 004603          585 E---------SFTVKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE  653 (743)
Q Consensus       585 ~---------t~~~i~~l~~H~~~V~~vafsp~--~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~  653 (743)
                      .         +.++++.|..|+-.|+++...+.  ..+|+|++.|.++|+||+..+.. +.++. ....+.+++.+|.+.
T Consensus       153 ~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~L-Llti~-fp~si~av~lDpae~  230 (476)
T KOG0646|consen  153 TDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVL-LLTIT-FPSSIKAVALDPAER  230 (476)
T ss_pred             EeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEecccee-eEEEe-cCCcceeEEEccccc
Confidence            3         35788999999999999988764  56899999999999999998764 44444 456799999999876


Q ss_pred             cEEEEEeCCCcEEEEECCCCe----------------eeEEEecc------CceeeecCCCEEEEEecCCeEEEEecc
Q 004603          654 DLLCSCDNNSEIRYWSINNGS----------------CAGVFKVC------NLMPIILKGCFILNSIFNCYLLLHRIF  709 (743)
Q Consensus       654 ~lL~Sgs~Dg~IrvWDl~tg~----------------~v~~~~~~------~~i~~s~~g~~l~sgs~Dg~I~vh~~~  709 (743)
                       .++.|+.+|.|.+.++....                .+..+.+|      ++++++-||..|++|+.||.|+||+..
T Consensus       231 -~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~  307 (476)
T KOG0646|consen  231 -VVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIY  307 (476)
T ss_pred             -EEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecc
Confidence             55589999999998875422                23444454      347788999999999999999999875

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.64  E-value=2.8e-14  Score=140.03  Aligned_cols=212  Identities=18%  Similarity=0.237  Sum_probs=157.1

Q ss_pred             CCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCC---CCC-------ccc---cccc-------
Q 004603          479 ASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDAD---PRD-------RVG---RSAE-------  538 (743)
Q Consensus       479 s~~~s~~~fs~dg~~~l~~~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~---~~~-------~~~---~~~~-------  538 (743)
                      ..++-|..|+|++               .++++|+.|.+|++.-++.+..   +.+       .++   -..+       
T Consensus        89 kgsiyc~~ws~~g---------------eliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~  153 (350)
T KOG0641|consen   89 KGSIYCTAWSPCG---------------ELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGA  153 (350)
T ss_pred             CccEEEEEecCcc---------------CeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCce
Confidence            3466778888887               5889999999998875543321   000       000   0000       


Q ss_pred             ----c---------CCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcc--c-----CC
Q 004603          539 ----V---------GKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE--H-----TQ  598 (743)
Q Consensus       539 ----~---------~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~--H-----~~  598 (743)
                          .         .+......+..+.+|++.|.++ ++-++-.|++|+.|++|++||++-..++.++..  |     +.
T Consensus       154 il~s~gagdc~iy~tdc~~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~gless  232 (350)
T KOG0641|consen  154 ILASAGAGDCKIYITDCGRGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESS  232 (350)
T ss_pred             EEEecCCCcceEEEeecCCCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccc
Confidence                0         0011224467788999999877 334788999999999999999998888877642  2     35


Q ss_pred             CEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCC---e-
Q 004603          599 WITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG---S-  674 (743)
Q Consensus       599 ~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg---~-  674 (743)
                      .|.+|+..|.|++|++|-.|....+||++-++ .+..|..|+..|.++.|+|.- +++.+|+.|..|++-|+...   + 
T Consensus       233 avaav~vdpsgrll~sg~~dssc~lydirg~r-~iq~f~phsadir~vrfsp~a-~yllt~syd~~ikltdlqgdla~el  310 (350)
T KOG0641|consen  233 AVAAVAVDPSGRLLASGHADSSCMLYDIRGGR-MIQRFHPHSADIRCVRFSPGA-HYLLTCSYDMKIKLTDLQGDLAHEL  310 (350)
T ss_pred             eeEEEEECCCcceeeeccCCCceEEEEeeCCc-eeeeeCCCccceeEEEeCCCc-eEEEEecccceEEEeecccchhhcC
Confidence            79999999999999999999999999999765 499999999999999999975 56669999999999998732   1 


Q ss_pred             eeEEEeccC----ceeeecCCCEEEEEecCCeEEEEec
Q 004603          675 CAGVFKVCN----LMPIILKGCFILNSIFNCYLLLHRI  708 (743)
Q Consensus       675 ~v~~~~~~~----~i~~s~~g~~l~sgs~Dg~I~vh~~  708 (743)
                      .+.+...|.    .+.|+|..-.+++.+.|.++.+|..
T Consensus       311 ~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~  348 (350)
T KOG0641|consen  311 PIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWAL  348 (350)
T ss_pred             ceEEEEeccCceEEEEecCccceeeeccCcceEEEecc
Confidence            122222221    2568888888999999999999864

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.63  E-value=1.5e-13  Score=144.98  Aligned_cols=209  Identities=11%  Similarity=0.047  Sum_probs=147.4

Q ss_pred             CEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEE-EEEeCCCcEEEEECC
Q 004603          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLL-ATGGHDKKAVLWCTE  585 (743)
Q Consensus       507 ~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~L-aSgs~Dg~V~IWd~~  585 (743)
                      +++++++.|+.+++|+...+                   +.+..+..|.. +.+++|+|+++.+ ++++.|+.|++||+.
T Consensus         2 ~~~~s~~~d~~v~~~d~~t~-------------------~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~   61 (300)
T TIGR03866         2 KAYVSNEKDNTISVIDTATL-------------------EVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLA   61 (300)
T ss_pred             cEEEEecCCCEEEEEECCCC-------------------ceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECC
Confidence            56788999999999955332                   23445555543 7789999999876 567788999999999


Q ss_pred             CCeEEEEEcccCCCEEEEEEcCCCCEEEE-EeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCC-C
Q 004603          586 SFTVKSTLEEHTQWITDVRFSPSLSRLAT-SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-S  663 (743)
Q Consensus       586 t~~~i~~l~~H~~~V~~vafsp~~~~LaS-gs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~D-g  663 (743)
                      +++.+..+..+.. +..++|+|+++.+++ ++.|+.|++||+++... +..+.. ...+.+++|+|++..++ +++.+ .
T Consensus        62 ~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~-~~~~~~-~~~~~~~~~~~dg~~l~-~~~~~~~  137 (300)
T TIGR03866        62 TGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRKV-LAEIPV-GVEPEGMAVSPDGKIVV-NTSETTN  137 (300)
T ss_pred             CCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeE-EeEeeC-CCCcceEEECCCCCEEE-EEecCCC
Confidence            9888877765544 567899999887755 45689999999987543 555542 34468899999988555 45544 4


Q ss_pred             cEEEEECCCCeeeEEEec---cCceeeecCCCEEEEE-ecCCeEEEEecccce----E---------------EEEecCC
Q 004603          664 EIRYWSINNGSCAGVFKV---CNLMPIILKGCFILNS-IFNCYLLLHRIFLNL----L---------------SVSEWCN  720 (743)
Q Consensus       664 ~IrvWDl~tg~~v~~~~~---~~~i~~s~~g~~l~sg-s~Dg~I~vh~~~v~~----l---------------~v~~~~~  720 (743)
                      .+++||.++++.+..+..   ...+.+++++.+++.+ ..++.|.+|+.....    +               .+....+
T Consensus       138 ~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d  217 (300)
T TIGR03866       138 MAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKD  217 (300)
T ss_pred             eEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCC
Confidence            678889998887665432   2346789999988655 468999998764321    1               1222333


Q ss_pred             CCEE-EEEeCCCeEEEeCCC
Q 004603          721 PDEI-STSSWKDSCCSHREL  739 (743)
Q Consensus       721 ~~~l-aSgs~DG~V~iWd~~  739 (743)
                      +..+ ++.+.++.|.+||..
T Consensus       218 g~~~~~~~~~~~~i~v~d~~  237 (300)
T TIGR03866       218 GKTAFVALGPANRVAVVDAK  237 (300)
T ss_pred             CCEEEEEcCCCCeEEEEECC
Confidence            4553 444567789999854

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.63  E-value=8.1e-15  Score=157.16  Aligned_cols=212  Identities=16%  Similarity=0.197  Sum_probs=167.3

Q ss_pred             CCCCceEEEEecCCCccccccCcc-----------ccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceee
Q 004603          478 GASSKSLLMFGSDGMGSLTSAPNQ-----------LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFT  546 (743)
Q Consensus       478 ~s~~~s~~~fs~dg~~~l~~~~~~-----------l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~  546 (743)
                      -+.++.+..|.-++.. -.++...           ......++++|+..+.|++|+...                   ..
T Consensus        53 ~~gdk~~~~~~K~g~~-~~Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~-------------------kl  112 (673)
T KOG4378|consen   53 MAGDKVMRIKEKDGKT-PEVPRVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRA-------------------KL  112 (673)
T ss_pred             cCCceeEEEecccCCC-CccceeeccccchHHHHhhhhcceeeeccCcCceeeehhhHH-------------------HH
Confidence            4556777777777651 1111111           122347899999999999995432                   23


Q ss_pred             eEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccC-CCEEEEEEcCCCC-EEEEEeCCCeEEEE
Q 004603          547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHT-QWITDVRFSPSLS-RLATSSADRTVRVW  624 (743)
Q Consensus       547 ~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~-~~V~~vafsp~~~-~LaSgs~Dg~VrvW  624 (743)
                      ..+.+++|.+.|+|+.++-...+||+++..|.|.|..+.++..-..|.... ..|..++|+|..+ +|.+++.+|.|.+|
T Consensus       113 ~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~Vtlw  192 (673)
T KOG4378|consen  113 IHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLW  192 (673)
T ss_pred             HhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEE
Confidence            456678999999999999989999999999999999999887777776443 4466899999644 57889999999999


Q ss_pred             ECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEecc---CceeeecCCCEEEEEecCC
Q 004603          625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVC---NLMPIILKGCFILNSIFNC  701 (743)
Q Consensus       625 Dl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~---~~i~~s~~g~~l~sgs~Dg  701 (743)
                      |+............|..+...|||+|..+.+|++.+.|+.|.+||++..+...++...   +.++|.++|.+|+.|...|
T Consensus       193 Dv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~s~G  272 (673)
T KOG4378|consen  193 DVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSECGTYLCAGNSKG  272 (673)
T ss_pred             eccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeecCCcceeeecCCceEEEeecCCc
Confidence            9986555455667899999999999999999999999999999999988777666643   5688999999999999999


Q ss_pred             eEEEEecc
Q 004603          702 YLLLHRIF  709 (743)
Q Consensus       702 ~I~vh~~~  709 (743)
                      .|..++..
T Consensus       273 ~~i~YD~R  280 (673)
T KOG4378|consen  273 ELIAYDMR  280 (673)
T ss_pred             eEEEEecc
Confidence            98885543

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.63  E-value=1.3e-14  Score=148.52  Aligned_cols=177  Identities=19%  Similarity=0.249  Sum_probs=143.4

Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEe
Q 004603          558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT  637 (743)
Q Consensus       558 V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~  637 (743)
                      ..||.|++.|.+||+|+.||.|.|||+.+...-+.+.+|..+|++++|+++|+.|+|++.|..|.+||+..+. ++..+.
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs-~l~rir  104 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGS-PLKRIR  104 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCC-ceeEEE
Confidence            7899999999999999999999999999999889999999999999999999999999999999999999987 477666


Q ss_pred             cCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEec---------cCceeeecCCCEEEEEecCCeEEEEec
Q 004603          638 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKV---------CNLMPIILKGCFILNSIFNCYLLLHRI  708 (743)
Q Consensus       638 ~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~---------~~~i~~s~~g~~l~sgs~Dg~I~vh~~  708 (743)
                       ..++|+...|+|...+.++++-.+..-.+-++..++.. .+..         .....|.+.|.|+++|...|.+.+.+.
T Consensus       105 -f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~-~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a  182 (405)
T KOG1273|consen  105 -FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHS-VLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDA  182 (405)
T ss_pred             -ccCccceeeeccccCCeEEEEEecCCcEEEEecCCcee-eccCCCccccccccccccccCCCCEEEEecCcceEEEEec
Confidence             57899999999988877777766666667776653211 1111         112347889999999999999988433


Q ss_pred             c---------------cceEEEEecCCCCEEEEEeCCCeEEEeCCC
Q 004603          709 F---------------LNLLSVSEWCNPDEISTSSWKDSCCSHREL  739 (743)
Q Consensus       709 ~---------------v~~l~v~~~~~~~~laSgs~DG~V~iWd~~  739 (743)
                      .               ++.+.++..  +..++.-+.|..|+.|+-.
T Consensus       183 ~t~e~vas~rits~~~IK~I~~s~~--g~~liiNtsDRvIR~ye~~  226 (405)
T KOG1273|consen  183 ETLECVASFRITSVQAIKQIIVSRK--GRFLIINTSDRVIRTYEIS  226 (405)
T ss_pred             chheeeeeeeechheeeeEEEEecc--CcEEEEecCCceEEEEehh
Confidence            2               233333333  7799999999999999755

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.63  E-value=4.3e-15  Score=162.12  Aligned_cols=221  Identities=16%  Similarity=0.135  Sum_probs=143.0

Q ss_pred             ccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 004603          502 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVL  581 (743)
Q Consensus       502 l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~I  581 (743)
                      +......+++++.|+.+++|.....           ........+++.+|++|.++|.|+++.+++..+++|+.||+|+.
T Consensus       302 ~~~sep~lit~sed~~lk~WnLqk~-----------~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~  370 (577)
T KOG0642|consen  302 FHPSEPVLITASEDGTLKLWNLQKA-----------KKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRC  370 (577)
T ss_pred             cCCCCCeEEEeccccchhhhhhccc-----------CCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeee
Confidence            4556789999999999999966321           12245567889999999999999999999999999999999999


Q ss_pred             EECCC-------C---eEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecC
Q 004603          582 WCTES-------F---TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS  651 (743)
Q Consensus       582 Wd~~t-------~---~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~  651 (743)
                      |++..       .   ....++.||++.|+.+++++....|++|+.||+||+|+......|+.......+...+++|-..
T Consensus       371 w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss  450 (577)
T KOG0642|consen  371 WNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSS  450 (577)
T ss_pred             eccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccc
Confidence            96531       1   2345678999999999999988899999999999999987644322222222233445555433


Q ss_pred             CCcEEEEEeCCCcEEEEECCC---CeeeEEEec-----------cCceeeecCCCEEEEEecCCeEEE------------
Q 004603          652 KEDLLCSCDNNSEIRYWSINN---GSCAGVFKV-----------CNLMPIILKGCFILNSIFNCYLLL------------  705 (743)
Q Consensus       652 g~~lL~Sgs~Dg~IrvWDl~t---g~~v~~~~~-----------~~~i~~s~~g~~l~sgs~Dg~I~v------------  705 (743)
                      ..-+.++   +..++++++.+   ...+..+..           ...+..++.+.+.+++..|+.|++            
T Consensus       451 ~~a~~~~---s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~  527 (577)
T KOG0642|consen  451 RPAHSLA---SFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSM  527 (577)
T ss_pred             hhHhhhh---hcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchhe
Confidence            2111212   12233333322   222222211           122344456666666666666666            


Q ss_pred             --EecccceEEEEecCCCCEEEEEeCCCeEEEeCC
Q 004603          706 --HRIFLNLLSVSEWCNPDEISTSSWKDSCCSHRE  738 (743)
Q Consensus       706 --h~~~v~~l~v~~~~~~~~laSgs~DG~V~iWd~  738 (743)
                        |...+..+++.+.  +.+|.+++.|+.|++|+-
T Consensus       528 ~a~~~svtslai~~n--g~~l~s~s~d~sv~l~kl  560 (577)
T KOG0642|consen  528 VAHKDSVTSLAIDPN--GPYLMSGSHDGSVRLWKL  560 (577)
T ss_pred             eeccceecceeecCC--CceEEeecCCceeehhhc
Confidence              2223334444333  557777777777777754

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.62  E-value=4e-14  Score=145.02  Aligned_cols=222  Identities=14%  Similarity=0.182  Sum_probs=160.5

Q ss_pred             ceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEE
Q 004603          482 KSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESC  561 (743)
Q Consensus       482 ~s~~~fs~dg~~~l~~~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~si  561 (743)
                      ..++.|++-|               .+|+.|+.||.|.+|+..                   ++..-+.+.+|..+|+|+
T Consensus        26 a~~~~Fs~~G---------------~~lAvGc~nG~vvI~D~~-------------------T~~iar~lsaH~~pi~sl   71 (405)
T KOG1273|consen   26 AECCQFSRWG---------------DYLAVGCANGRVVIYDFD-------------------TFRIARMLSAHVRPITSL   71 (405)
T ss_pred             cceEEeccCc---------------ceeeeeccCCcEEEEEcc-------------------ccchhhhhhccccceeEE
Confidence            4556677655               699999999999999553                   334556788999999999


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCeeEEEEe--c
Q 004603          562 HFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDYSLRTFT--G  638 (743)
Q Consensus       562 afspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~-~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~--~  638 (743)
                      +||+||++|+|+|.|..|++||+..+.++..++ ...+|+.+.|+|. .+.++.+-.+..-.+-++..+...+....  +
T Consensus        72 ~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~  150 (405)
T KOG1273|consen   72 CWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDG  150 (405)
T ss_pred             EecCCCCEeeeecCCceeEEEeccCCCceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCcc
Confidence            999999999999999999999999999988886 4778999999994 34444444455556666654332111111  0


Q ss_pred             -CCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEeccC-----ceeeecCCCEEEEEecCCeEEEEecc---
Q 004603          639 -HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCN-----LMPIILKGCFILNSIFNCYLLLHRIF---  709 (743)
Q Consensus       639 -h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~~-----~i~~s~~g~~l~sgs~Dg~I~vh~~~---  709 (743)
                       ......+..|++.|++ +++|...|.+.|+|..+-+|+..++..+     .+.++..|.+++.-+.|++|+..+..   
T Consensus       151 dln~sas~~~fdr~g~y-IitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~  229 (405)
T KOG1273|consen  151 DLNSSASHGVFDRRGKY-IITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDID  229 (405)
T ss_pred             ccccccccccccCCCCE-EEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhc
Confidence             1111223468888875 5589999999999999999999888643     47788999999999999999996543   


Q ss_pred             -----------------cceEE---EEecCCCCEEEEEeCC-CeEEEeCCC
Q 004603          710 -----------------LNLLS---VSEWCNPDEISTSSWK-DSCCSHREL  739 (743)
Q Consensus       710 -----------------v~~l~---v~~~~~~~~laSgs~D-G~V~iWd~~  739 (743)
                                       ++.+.   .+++.++.+++.++.. ..++||-..
T Consensus       230 ~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~  280 (405)
T KOG1273|consen  230 DEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKS  280 (405)
T ss_pred             ccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecC
Confidence                             11111   2334446676666633 368889643

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.62  E-value=1.2e-14  Score=159.21  Aligned_cols=180  Identities=19%  Similarity=0.268  Sum_probs=139.3

Q ss_pred             CCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCC-------eEEEEEcccCCCEEEEEEcC-CCCEEEEEeCCCeEEEEEC
Q 004603          556 SKVESCHFSP-DGKLLATGGHDKKAVLWCTESF-------TVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDT  626 (743)
Q Consensus       556 ~~V~siafsp-dg~~LaSgs~Dg~V~IWd~~t~-------~~i~~l~~H~~~V~~vafsp-~~~~LaSgs~Dg~VrvWDl  626 (743)
                      ..|++++|.| |...||+|++||.|+||.+..+       .+...+.+|...|++++||| -.+.|++++.|.+|++||+
T Consensus       628 t~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl  707 (1012)
T KOG1445|consen  628 TLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDL  707 (1012)
T ss_pred             ceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeeh
Confidence            3599999999 8889999999999999998642       35567889999999999999 4678999999999999999


Q ss_pred             CCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCee-eEEEecc-----CceeeecCCCEEEEEecC
Q 004603          627 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-AGVFKVC-----NLMPIILKGCFILNSIFN  700 (743)
Q Consensus       627 ~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~-v~~~~~~-----~~i~~s~~g~~l~sgs~D  700 (743)
                      ++... ...+.+|.+.|.+++|+|+|. .+++.+.||+||||..++++. +..-++.     ..+.|..+|.++++.+.|
T Consensus       708 ~~~~~-~~~l~gHtdqIf~~AWSpdGr-~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfd  785 (1012)
T KOG1445|consen  708 ANAKL-YSRLVGHTDQIFGIAWSPDGR-RIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFD  785 (1012)
T ss_pred             hhhhh-hheeccCcCceeEEEECCCCc-ceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEeccc
Confidence            98765 678899999999999999987 677999999999999987643 3322221     337788999999988877


Q ss_pred             Ce----EEEEec--------ccceEEEEe-------cCC-CCEEEEEeCCCeEEEeC
Q 004603          701 CY----LLLHRI--------FLNLLSVSE-------WCN-PDEISTSSWKDSCCSHR  737 (743)
Q Consensus       701 g~----I~vh~~--------~v~~l~v~~-------~~~-~~~laSgs~DG~V~iWd  737 (743)
                      ..    |.+++.        ....+.+.+       +.+ +.++++|-.|..|..|.
T Consensus       786 k~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yE  842 (1012)
T KOG1445|consen  786 KSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYE  842 (1012)
T ss_pred             ccchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEecCCCceEEEEE
Confidence            53    222211        111222221       122 46788898999998873

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.61  E-value=3.4e-14  Score=149.25  Aligned_cols=189  Identities=19%  Similarity=0.247  Sum_probs=146.9

Q ss_pred             CCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEC
Q 004603          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCT  584 (743)
Q Consensus       506 ~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafsp-dg~~LaSgs~Dg~V~IWd~  584 (743)
                      +..|++||.|.+|.+|..+++...++            ...++..+.+|...|--|+|+| -.+.|++++.|.+|.|||+
T Consensus        94 D~vIASgSeD~~v~vW~IPe~~l~~~------------ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv  161 (472)
T KOG0303|consen   94 DCVIASGSEDTKVMVWQIPENGLTRD------------LTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNV  161 (472)
T ss_pred             CceeecCCCCceEEEEECCCcccccC------------cccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEec
Confidence            37899999999999998877642221            2267889999999999999999 4568999999999999999


Q ss_pred             CCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCC-eEEEEEecCCCcEEEEEe---
Q 004603          585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTT-VMSLDFHPSKEDLLCSCD---  660 (743)
Q Consensus       585 ~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~-V~sl~fsp~g~~lL~Sgs---  660 (743)
                      .+++.+.++. |.+.|+++.|+.+|.+|+|.+.|+.|||||.+++.. +..-.+|.+. ...+.|-.++. ++.+|-   
T Consensus       162 ~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~-v~e~~~heG~k~~Raifl~~g~-i~tTGfsr~  238 (472)
T KOG0303|consen  162 GTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTV-VSEGVAHEGAKPARAIFLASGK-IFTTGFSRM  238 (472)
T ss_pred             cCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcE-eeecccccCCCcceeEEeccCc-eeeeccccc
Confidence            9999888887 999999999999999999999999999999999775 6666777753 45567777776 665553   


Q ss_pred             CCCcEEEEECCCCe---eeEEEeccCce--e-eecCCCEEE-EEecCCeEEEEecc
Q 004603          661 NNSEIRYWSINNGS---CAGVFKVCNLM--P-IILKGCFIL-NSIFNCYLLLHRIF  709 (743)
Q Consensus       661 ~Dg~IrvWDl~tg~---~v~~~~~~~~i--~-~s~~g~~l~-sgs~Dg~I~vh~~~  709 (743)
                      .+..|-+||..+-+   ....+...+.+  + +.++...++ +|-.|+.|+.+...
T Consensus       239 seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit  294 (472)
T KOG0303|consen  239 SERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEIT  294 (472)
T ss_pred             cccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEec
Confidence            46789999876543   23344444442  2 446666655 56678888885443

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.61  E-value=1e-13  Score=142.06  Aligned_cols=181  Identities=15%  Similarity=0.184  Sum_probs=140.2

Q ss_pred             CCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004603          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE  585 (743)
Q Consensus       506 ~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~  585 (743)
                      +.-+++|+.|+.|+.++...+                    ....+-.|...|.||.+++....+++||+|++|++||.+
T Consensus        65 ~~~~~~G~~dg~vr~~Dln~~--------------------~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R  124 (323)
T KOG1036|consen   65 ESTIVTGGLDGQVRRYDLNTG--------------------NEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPR  124 (323)
T ss_pred             CceEEEeccCceEEEEEecCC--------------------cceeeccCCCceEEEEeeccCCeEEEcccCccEEEEecc
Confidence            457789999999999976554                    223456799999999999988899999999999999999


Q ss_pred             CCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEE-ecCCCCeEEEEEecCCCcEEEEEeCCCc
Q 004603          586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF-TGHSTTVMSLDFHPSKEDLLCSCDNNSE  664 (743)
Q Consensus       586 t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l-~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~  664 (743)
                      ....+.++.. ...|.|+...  ++.|+.|+.|..|.+||+++...+.... ..-.-.+.+|++.|++..++ +++-||.
T Consensus       125 ~~~~~~~~d~-~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~-~sSieGR  200 (323)
T KOG1036|consen  125 NKVVVGTFDQ-GKKVYCMDVS--GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYV-VSSIEGR  200 (323)
T ss_pred             cccccccccc-CceEEEEecc--CCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceE-EEeecce
Confidence            7555555543 4489998775  6789999999999999999876544221 12234588999999766555 7778999


Q ss_pred             EEEEECCCC----eeeEEEecc-------------CceeeecCCCEEEEEecCCeEEEEeccc
Q 004603          665 IRYWSINNG----SCAGVFKVC-------------NLMPIILKGCFILNSIFNCYLLLHRIFL  710 (743)
Q Consensus       665 IrvWDl~tg----~~v~~~~~~-------------~~i~~s~~g~~l~sgs~Dg~I~vh~~~v  710 (743)
                      |.|=.++..    +....|++|             +.+.|+|.-..+++|+.||.|.+|+...
T Consensus       201 VavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~  263 (323)
T KOG1036|consen  201 VAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFN  263 (323)
T ss_pred             EEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcc
Confidence            888666654    333455554             4588999999999999999999998643

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.59  E-value=3.3e-15  Score=174.17  Aligned_cols=233  Identities=16%  Similarity=0.192  Sum_probs=171.7

Q ss_pred             CCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeE
Q 004603          480 SSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVE  559 (743)
Q Consensus       480 ~~~s~~~fs~dg~~~l~~~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~  559 (743)
                      .....+.|...+.+          . ..+|+.|..||+|.+|+...-             ..+.....+.....|++.|.
T Consensus        65 ~rF~kL~W~~~g~~----------~-~GlIaGG~edG~I~ly~p~~~-------------~~~~~~~~la~~~~h~G~V~  120 (1049)
T KOG0307|consen   65 NRFNKLAWGSYGSH----------S-HGLIAGGLEDGNIVLYDPASI-------------IANASEEVLATKSKHTGPVL  120 (1049)
T ss_pred             ccceeeeecccCCC----------c-cceeeccccCCceEEecchhh-------------ccCcchHHHhhhcccCCcee
Confidence            34445667765541          1 157899999999999955332             12334456777889999999


Q ss_pred             EEEEcCC-CCEEEEEeCCCcEEEEECCCCeEEEEEc--ccCCCEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCeeEEE
Q 004603          560 SCHFSPD-GKLLATGGHDKKAVLWCTESFTVKSTLE--EHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDYSLRT  635 (743)
Q Consensus       560 siafspd-g~~LaSgs~Dg~V~IWd~~t~~~i~~l~--~H~~~V~~vafsp~-~~~LaSgs~Dg~VrvWDl~~~~~~l~~  635 (743)
                      .+.|++. +++||+|+.||.|.|||+.+.+.-.++.  ...+.|.|++|+.. .+.|++++.+|++.|||+|..+. +..
T Consensus       121 gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~p-ii~  199 (1049)
T KOG0307|consen  121 GLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKP-IIK  199 (1049)
T ss_pred             eeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCc-ccc
Confidence            9999995 4599999999999999998754433331  24578999999884 66789999999999999998653 555


Q ss_pred             EecCCC--CeEEEEEecCCCcEEEEEeCCC---cEEEEECCCC-eeeEEEeccCc----eeeec-CCCEEEEEecCCeEE
Q 004603          636 FTGHST--TVMSLDFHPSKEDLLCSCDNNS---EIRYWSINNG-SCAGVFKVCNL----MPIIL-KGCFILNSIFNCYLL  704 (743)
Q Consensus       636 l~~h~~--~V~sl~fsp~g~~lL~Sgs~Dg---~IrvWDl~tg-~~v~~~~~~~~----i~~s~-~g~~l~sgs~Dg~I~  704 (743)
                      +..|..  .+..|.|||++..-+++++.|.   .|.+||+|.. ..++++.+|..    +.+++ |..++++++.|+.|.
T Consensus       200 ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii  279 (1049)
T KOG0307|consen  200 LSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRII  279 (1049)
T ss_pred             cccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCee
Confidence            554443  4789999999877666776554   6999999864 46677766643    55555 448999999999999


Q ss_pred             EEeccc------------ceEEEEecC-CCCEEEEEeCCCeEEEeC
Q 004603          705 LHRIFL------------NLLSVSEWC-NPDEISTSSWKDSCCSHR  737 (743)
Q Consensus       705 vh~~~v------------~~l~v~~~~-~~~~laSgs~DG~V~iWd  737 (743)
                      +|+...            -++.+.+.. ++..+++.+.||+|-|+.
T Consensus       280 ~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~s  325 (1049)
T KOG0307|consen  280 CWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYS  325 (1049)
T ss_pred             EecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeee
Confidence            987653            123333332 267999999999999984

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.59  E-value=7.6e-14  Score=142.75  Aligned_cols=187  Identities=16%  Similarity=0.185  Sum_probs=137.6

Q ss_pred             eCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC----CeEEEEEcccCCCEEEEEEc-CC-CCEEEEEeCCCeEEEEE
Q 004603          552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES----FTVKSTLEEHTQWITDVRFS-PS-LSRLATSSADRTVRVWD  625 (743)
Q Consensus       552 ~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t----~~~i~~l~~H~~~V~~vafs-p~-~~~LaSgs~Dg~VrvWD  625 (743)
                      .+|.+-|.|+.|.+.|+.+|+|+.|.+|+|||.+.    ..+...++.|.+.|..|.|. |. |..+|+|+.|++|+||.
T Consensus        10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE   89 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE   89 (361)
T ss_pred             cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence            47899999999999999999999999999999643    45667789999999999994 44 89999999999999997


Q ss_pred             CCCCC--------eeEEEEecCCCCeEEEEEecCCC-cEEEEEeCCCcEEEEECCCCeeeEEEec-------------c-
Q 004603          626 TENPD--------YSLRTFTGHSTTVMSLDFHPSKE-DLLCSCDNNSEIRYWSINNGSCAGVFKV-------------C-  682 (743)
Q Consensus       626 l~~~~--------~~l~~l~~h~~~V~sl~fsp~g~-~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~-------------~-  682 (743)
                      -....        ..+.++....+.|++|+|.|... ..+++++.||.||||+.-....+.....             + 
T Consensus        90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~  169 (361)
T KOG2445|consen   90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNK  169 (361)
T ss_pred             ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccccc
Confidence            52111        12456777888999999999732 3688999999999998765433222211             1 


Q ss_pred             ---Cceeeec---CCCEEEEEecC-----CeEEE------------------EecccceEEEEecCC--CCEEEEEeCCC
Q 004603          683 ---NLMPIIL---KGCFILNSIFN-----CYLLL------------------HRIFLNLLSVSEWCN--PDEISTSSWKD  731 (743)
Q Consensus       683 ---~~i~~s~---~g~~l~sgs~D-----g~I~v------------------h~~~v~~l~v~~~~~--~~~laSgs~DG  731 (743)
                         .++.+.+   ...+|+.|+.+     +.+.|                  |...+..++|.+...  -..||+++.||
T Consensus       170 ~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg  249 (361)
T KOG2445|consen  170 QPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG  249 (361)
T ss_pred             CcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc
Confidence               1122332   23457777766     23333                  445567777776643  35799999999


Q ss_pred             eEEEeCCC
Q 004603          732 SCCSHREL  739 (743)
Q Consensus       732 ~V~iWd~~  739 (743)
                       |+||+-.
T Consensus       250 -v~I~~v~  256 (361)
T KOG2445|consen  250 -VRIFKVK  256 (361)
T ss_pred             -EEEEEEe
Confidence             9999754

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.59  E-value=1.8e-14  Score=154.48  Aligned_cols=182  Identities=14%  Similarity=0.126  Sum_probs=145.8

Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEe
Q 004603          558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT  637 (743)
Q Consensus       558 V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~  637 (743)
                      -+|++......++++|+..+.|+|||++...+.+.+++|...|++|.++....+||+++..|.|.|..+.++.. ..+|.
T Consensus        82 ~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~-tt~f~  160 (673)
T KOG4378|consen   82 AFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQK-TTTFT  160 (673)
T ss_pred             HHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCcc-cccee
Confidence            45555555568999999999999999998778888999999999999999999999999999999999988664 44555


Q ss_pred             cC-CCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEe-cc----CceeeecC-CCEEEEEecCCeEEEEeccc
Q 004603          638 GH-STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-VC----NLMPIILK-GCFILNSIFNCYLLLHRIFL  710 (743)
Q Consensus       638 ~h-~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~-~~----~~i~~s~~-g~~l~sgs~Dg~I~vh~~~v  710 (743)
                      .. ...|.-|.|+|..+++|.+++.+|.|.+||+.....+..+. .|    ..++|+|. ...|++.+.|+.|.+++...
T Consensus       161 ~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s  240 (673)
T KOG4378|consen  161 IDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRS  240 (673)
T ss_pred             cCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeeccc
Confidence            33 34567899999999999999999999999999777665543 23    44888875 55678889999999976543


Q ss_pred             c-----------eEEEEecCCCCEEEEEeCCCeEEEeCCCc
Q 004603          711 N-----------LLSVSEWCNPDEISTSSWKDSCCSHRELY  740 (743)
Q Consensus       711 ~-----------~l~v~~~~~~~~laSgs~DG~V~iWd~~~  740 (743)
                      .           ...+.+..++.+|+.|...|.|+.||-+.
T Consensus       241 ~~s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~  281 (673)
T KOG4378|consen  241 QASTDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRS  281 (673)
T ss_pred             ccccceeeecCCcceeeecCCceEEEeecCCceEEEEeccc
Confidence            2           11223334478999999999999998653

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.59  E-value=1.4e-14  Score=149.17  Aligned_cols=191  Identities=14%  Similarity=0.148  Sum_probs=145.0

Q ss_pred             eeeEEEeeCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCeEEEEE---cccCCCEEEEEEcCCCCEEEEEeCCCe
Q 004603          545 FTEFQLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTESFTVKSTL---EEHTQWITDVRFSPSLSRLATSSADRT  620 (743)
Q Consensus       545 ~~~~~~l~~H~~~V~siafspd-g~~LaSgs~Dg~V~IWd~~t~~~i~~l---~~H~~~V~~vafsp~~~~LaSgs~Dg~  620 (743)
                      ....+.+.+|...|+.|.|+|+ ..+|++||.|..||+|++.+..++..|   ++|.+.|.++.|++++.+|++|+.|..
T Consensus       125 ~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhs  204 (385)
T KOG1034|consen  125 GQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHS  204 (385)
T ss_pred             hhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcce
Confidence            3567788999999999999995 479999999999999999999999887   579999999999999999999999999


Q ss_pred             EEEEECCCCCe------------------------e---EEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECC-C
Q 004603          621 VRVWDTENPDY------------------------S---LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-N  672 (743)
Q Consensus       621 VrvWDl~~~~~------------------------~---l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~-t  672 (743)
                      |++|++..+..                        .   ..+-.-|...|-|+.|--  + ++++-+-++.|..|-.. -
T Consensus       205 lk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~g--d-~ilSkscenaI~~w~pgkl  281 (385)
T KOG1034|consen  205 LKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFG--D-FILSKSCENAIVCWKPGKL  281 (385)
T ss_pred             EEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHh--h-heeecccCceEEEEecchh
Confidence            99999973211                        0   012224667777777764  3 56687778899999872 1


Q ss_pred             Ce-------------eeEEEeccC------ceeeecCCCEEEEEecCCeEEEEecccc----------------eEEEEe
Q 004603          673 GS-------------CAGVFKVCN------LMPIILKGCFILNSIFNCYLLLHRIFLN----------------LLSVSE  717 (743)
Q Consensus       673 g~-------------~v~~~~~~~------~i~~s~~g~~l~sgs~Dg~I~vh~~~v~----------------~l~v~~  717 (743)
                      ++             .+..+....      ...+.+-+.+|+.|...|.|.+|+....                .-..++
T Consensus       282 ~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sf  361 (385)
T KOG1034|consen  282 EESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSF  361 (385)
T ss_pred             hhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeee
Confidence            11             122222222      1456677889999999999999875431                122344


Q ss_pred             cCCCCEEEEEeCCCeEEEeCC
Q 004603          718 WCNPDEISTSSWKDSCCSHRE  738 (743)
Q Consensus       718 ~~~~~~laSgs~DG~V~iWd~  738 (743)
                      ..++..|+....|++|.-||-
T Consensus       362 S~dgs~lv~vcdd~~Vwrwdr  382 (385)
T KOG1034|consen  362 SRDGSILVLVCDDGTVWRWDR  382 (385)
T ss_pred             cccCcEEEEEeCCCcEEEEEe
Confidence            445789999999999999984

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.59  E-value=4.1e-14  Score=159.97  Aligned_cols=190  Identities=22%  Similarity=0.301  Sum_probs=156.9

Q ss_pred             ccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 004603          502 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVL  581 (743)
Q Consensus       502 l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~I  581 (743)
                      +...++|+..|...|.|.+|....+-.                -..+..-..|.++|+.++...-++.+++++.||.+++
T Consensus       456 vs~CGNF~~IG~S~G~Id~fNmQSGi~----------------r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkf  519 (910)
T KOG1539|consen  456 VSFCGNFVFIGYSKGTIDRFNMQSGIH----------------RKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKF  519 (910)
T ss_pred             EeccCceEEEeccCCeEEEEEcccCee----------------ecccccCccccCceeEEEecCCCceEEEccCcceEEE
Confidence            445568888888888888886665520                0111122579999999999988999999999999999


Q ss_pred             EECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeC
Q 004603          582 WCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN  661 (743)
Q Consensus       582 Wd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~  661 (743)
                      ||..+...+..+.- ...+.++..+.....++.+..|-.|+++|+.+.+. ++.|.||...|++++|+|||++++ +++.
T Consensus       520 w~f~~k~l~~~l~l-~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kv-vR~f~gh~nritd~~FS~DgrWli-sasm  596 (910)
T KOG1539|consen  520 WDFKKKVLKKSLRL-GSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKV-VREFWGHGNRITDMTFSPDGRWLI-SASM  596 (910)
T ss_pred             EecCCcceeeeecc-CCCcceeeeeehhhhhhhhcCceeEEEEEchhhhh-hHHhhccccceeeeEeCCCCcEEE-Eeec
Confidence            99998777777653 45578888888888999999999999999998665 899999999999999999998665 8888


Q ss_pred             CCcEEEEECCCCeeeEEEec---cCceeeecCCCEEEEEecC-CeEEEEeccc
Q 004603          662 NSEIRYWSINNGSCAGVFKV---CNLMPIILKGCFILNSIFN-CYLLLHRIFL  710 (743)
Q Consensus       662 Dg~IrvWDl~tg~~v~~~~~---~~~i~~s~~g~~l~sgs~D-g~I~vh~~~v  710 (743)
                      |++||+||+.++.++..+..   ...+.++|+|.||++...| .-|.+|....
T Consensus       597 D~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylWsNks  649 (910)
T KOG1539|consen  597 DSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLWSNKS  649 (910)
T ss_pred             CCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEecCceEEEEEchh
Confidence            99999999999999887764   3568899999999999988 6688886543

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.58  E-value=1.1e-12  Score=140.86  Aligned_cols=215  Identities=23%  Similarity=0.329  Sum_probs=167.9

Q ss_pred             CCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCC-CCeEEEEE-cCCCC-EEEEEeC-CCcEEE
Q 004603          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST-SKVESCHF-SPDGK-LLATGGH-DKKAVL  581 (743)
Q Consensus       506 ~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~-~~V~siaf-spdg~-~LaSgs~-Dg~V~I  581 (743)
                      ...+..++.|+.+.+|......                  ..+..+.++. ..+..+.+ ++++. .++..+. |+.+++
T Consensus        77 ~~~~~~~~~d~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  138 (466)
T COG2319          77 GELLLSGSSDGTIKLWDLDNGE------------------KLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKL  138 (466)
T ss_pred             CcEEEEecCCCcEEEEEcCCCc------------------eeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEE
Confidence            3677888899999999654441                  2344444433 36777777 78777 5555444 999999


Q ss_pred             EECCC-CeEEEEEcccCCCEEEEEEcCCCCEEEEEeC-CCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEE
Q 004603          582 WCTES-FTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC  659 (743)
Q Consensus       582 Wd~~t-~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~-Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sg  659 (743)
                      ||... ......+..|...|.+++|+|++..+++++. |+.+++|++.... .+..+.+|...|.+++|+|++..+++++
T Consensus       139 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~  217 (466)
T COG2319         139 WDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGK-PLSTLAGHTDPVSSLAFSPDGGLLIASG  217 (466)
T ss_pred             EEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCc-eEEeeccCCCceEEEEEcCCcceEEEEe
Confidence            99998 7888899999999999999999988888885 9999999999744 4788888999999999999987566666


Q ss_pred             eCCCcEEEEECCCCeeeE-EEeccCce---eeecCCCEEEEEecCCeEEEEecccc-------------eEEEEecCCCC
Q 004603          660 DNNSEIRYWSINNGSCAG-VFKVCNLM---PIILKGCFILNSIFNCYLLLHRIFLN-------------LLSVSEWCNPD  722 (743)
Q Consensus       660 s~Dg~IrvWDl~tg~~v~-~~~~~~~i---~~s~~g~~l~sgs~Dg~I~vh~~~v~-------------~l~v~~~~~~~  722 (743)
                      +.|+.|++||...+.++. .+.++...   .+++++.++++++.|+.+++|+....             ...+...+...
T Consensus       218 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  297 (466)
T COG2319         218 SSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGK  297 (466)
T ss_pred             cCCCcEEEEECCCCcEEeeecCCCCcceeEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCC
Confidence            999999999999888877 57776554   68899989999999999999865421             11222233356


Q ss_pred             EEEEEeCCCeEEEeCCC
Q 004603          723 EISTSSWKDSCCSHREL  739 (743)
Q Consensus       723 ~laSgs~DG~V~iWd~~  739 (743)
                      .+++++.|+.+++|+..
T Consensus       298 ~~~~~~~d~~~~~~~~~  314 (466)
T COG2319         298 LLASGSSDGTVRLWDLE  314 (466)
T ss_pred             EEEEeeCCCcEEEEEcC
Confidence            77889999999999654

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.58  E-value=1.6e-13  Score=152.56  Aligned_cols=204  Identities=13%  Similarity=0.205  Sum_probs=159.7

Q ss_pred             CEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004603          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES  586 (743)
Q Consensus       507 ~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t  586 (743)
                      ..|.+.+.++.|.-|+..+                   .+....+....+.|++++.+|.+..++.||+||.+..++...
T Consensus        81 ~RLFS~g~sg~i~EwDl~~-------------------lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p  141 (691)
T KOG2048|consen   81 GRLFSSGLSGSITEWDLHT-------------------LKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGP  141 (691)
T ss_pred             CeEEeecCCceEEEEeccc-------------------CceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCC
Confidence            3467777888888884433                   356677778889999999999999999999999888888776


Q ss_pred             CeEE--EEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEE-------Ee-cCCCCeEEEEEecCCCcEE
Q 004603          587 FTVK--STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT-------FT-GHSTTVMSLDFHPSKEDLL  656 (743)
Q Consensus       587 ~~~i--~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~-------l~-~h~~~V~sl~fsp~g~~lL  656 (743)
                      ++..  +.|.-.+++|.+++|+|++..|++|+.||.|++||+.++.. +..       +. +....|++|.|-.++  .+
T Consensus       142 ~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t-~~~~~~~~d~l~k~~~~iVWSv~~Lrd~--tI  218 (691)
T KOG2048|consen  142 DKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQT-LHIITMQLDRLSKREPTIVWSVLFLRDS--TI  218 (691)
T ss_pred             ceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCce-EEEeeecccccccCCceEEEEEEEeecC--cE
Confidence            5543  34555678999999999999999999999999999988765 331       11 133458899988665  68


Q ss_pred             EEEeCCCcEEEEECCCCeeeEEEeccCc----eeeecCCCEEEEEecCCeEEE------------------EecccceEE
Q 004603          657 CSCDNNSEIRYWSINNGSCAGVFKVCNL----MPIILKGCFILNSIFNCYLLL------------------HRIFLNLLS  714 (743)
Q Consensus       657 ~Sgs~Dg~IrvWDl~tg~~v~~~~~~~~----i~~s~~g~~l~sgs~Dg~I~v------------------h~~~v~~l~  714 (743)
                      ++|+..|+|.+||...+..+..++.|..    ++..+++.++++++.|+.|..                  |...+.+++
T Consensus       219 ~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~a  298 (691)
T KOG2048|consen  219 ASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMA  298 (691)
T ss_pred             EEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeee
Confidence            8999999999999999999988887643    667788999999999998766                  233334444


Q ss_pred             EEecCCCCEEEEEeCCCeEEEe
Q 004603          715 VSEWCNPDEISTSSWKDSCCSH  736 (743)
Q Consensus       715 v~~~~~~~~laSgs~DG~V~iW  736 (743)
                      +.    +..+++||.|.++.+-
T Consensus       299 v~----~~~l~sgG~d~~l~i~  316 (691)
T KOG2048|consen  299 VI----ENALISGGRDFTLAIC  316 (691)
T ss_pred             ee----cceEEecceeeEEEEc
Confidence            43    3489999999988775

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.58  E-value=1.9e-14  Score=159.55  Aligned_cols=188  Identities=16%  Similarity=0.291  Sum_probs=150.7

Q ss_pred             ccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcC---CCCEEEEEeCCCc
Q 004603          502 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP---DGKLLATGGHDKK  578 (743)
Q Consensus       502 l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafsp---dg~~LaSgs~Dg~  578 (743)
                      +.+....|++|...|++++++.                   ........+++|...|.|+.|+.   ..++||+|+.|+-
T Consensus       467 vSp~gqhLAsGDr~GnlrVy~L-------------------q~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRl  527 (1080)
T KOG1408|consen  467 VSPDGQHLASGDRGGNLRVYDL-------------------QELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRL  527 (1080)
T ss_pred             ECCCcceecccCccCceEEEEe-------------------hhhhhhhheecccceeEEEeecCchhhhHhhhhccCCce
Confidence            4444578999999999999933                   33456677889999999999985   5679999999999


Q ss_pred             EEEEECCC-CeEEEEEcccCCC-------------------------------------------------EEEEEEcCC
Q 004603          579 AVLWCTES-FTVKSTLEEHTQW-------------------------------------------------ITDVRFSPS  608 (743)
Q Consensus       579 V~IWd~~t-~~~i~~l~~H~~~-------------------------------------------------V~~vafsp~  608 (743)
                      |.|||+.. ..++.++.+|...                                                 +++++..|.
T Consensus       528 IHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~  607 (1080)
T KOG1408|consen  528 IHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPT  607 (1080)
T ss_pred             EEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCC
Confidence            99999853 3334444444444                                                 455555566


Q ss_pred             CCEEEEEeCCCeEEEEECCCCCeeEEEEec---CCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEecc---
Q 004603          609 LSRLATSSADRTVRVWDTENPDYSLRTFTG---HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVC---  682 (743)
Q Consensus       609 ~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~---h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~---  682 (743)
                      .+++++++.|..|||||+..++. ++.|++   |++...-|...|.|-+ +++.+.|+++.|+|.-+|+|+....+|   
T Consensus       608 ~k~v~t~cQDrnirif~i~sgKq-~k~FKgs~~~eG~lIKv~lDPSgiY-~atScsdktl~~~Df~sgEcvA~m~GHsE~  685 (1080)
T KOG1408|consen  608 SKLVVTVCQDRNIRIFDIESGKQ-VKSFKGSRDHEGDLIKVILDPSGIY-LATSCSDKTLCFVDFVSGECVAQMTGHSEA  685 (1080)
T ss_pred             cceEEEEecccceEEEeccccce-eeeecccccCCCceEEEEECCCccE-EEEeecCCceEEEEeccchhhhhhcCcchh
Confidence            67899999999999999999775 777774   6677888999999875 445556999999999999999999887   


Q ss_pred             -CceeeecCCCEEEEEecCCeEEEEeccc
Q 004603          683 -NLMPIILKGCFILNSIFNCYLLLHRIFL  710 (743)
Q Consensus       683 -~~i~~s~~g~~l~sgs~Dg~I~vh~~~v  710 (743)
                       +.+.|.+|-+.|++.+.||.|.||....
T Consensus       686 VTG~kF~nDCkHlISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  686 VTGVKFLNDCKHLISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             eeeeeecccchhheeecCCceEEEEECch
Confidence             4577999999999999999999998765

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.57  E-value=6.7e-14  Score=149.46  Aligned_cols=214  Identities=18%  Similarity=0.124  Sum_probs=150.8

Q ss_pred             CEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004603          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES  586 (743)
Q Consensus       507 ~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t  586 (743)
                      ..+.+.|+||+|++-+....                 .+.++..+......+.++.|+.+...++.|..=|...+||.++
T Consensus       248 s~i~ssSyDGtiR~~D~~~~-----------------i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~  310 (498)
T KOG4328|consen  248 SQIYSSSYDGTIRLQDFEGN-----------------ISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRT  310 (498)
T ss_pred             hheeeeccCceeeeeeecch-----------------hhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeec
Confidence            56788899999999855433                 2333333334445578899998888888888777999999998


Q ss_pred             CeE-EEEEcccCCCEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCC--e-eEEEEecCCCCeEEEEEecCCCcEEEEEeC
Q 004603          587 FTV-KSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPD--Y-SLRTFTGHSTTVMSLDFHPSKEDLLCSCDN  661 (743)
Q Consensus       587 ~~~-i~~l~~H~~~V~~vafsp~-~~~LaSgs~Dg~VrvWDl~~~~--~-~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~  661 (743)
                      .+. ...++-|...|++|+++|. ..+|+||+.|++++|||+|.-.  . ++.....|...|.+..|+|.+..++ +-+.
T Consensus       311 ~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~-TT~~  389 (498)
T KOG4328|consen  311 DGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLL-TTCQ  389 (498)
T ss_pred             CCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceE-eecc
Confidence            654 6667789999999999995 5678999999999999998632  2 2334446999999999999988754 6667


Q ss_pred             CCcEEEEECC----CCeeeEEEeccC---------ceeeecCCCEEEEEecCCeEEEEecccce-------------EEE
Q 004603          662 NSEIRYWSIN----NGSCAGVFKVCN---------LMPIILKGCFILNSIFNCYLLLHRIFLNL-------------LSV  715 (743)
Q Consensus       662 Dg~IrvWDl~----tg~~v~~~~~~~---------~i~~s~~g~~l~sgs~Dg~I~vh~~~v~~-------------l~v  715 (743)
                      |.+|||||..    .......+.+.+         ...|.|+..+|++|..-..|-|.+....-             -++
T Consensus       390 D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~v  469 (498)
T KOG4328|consen  390 DNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSV  469 (498)
T ss_pred             CCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccc
Confidence            9999999983    333333443211         14588999999999887777664433322             111


Q ss_pred             EecCC-CC-EEEEEeCCCeEEEeCC
Q 004603          716 SEWCN-PD-EISTSSWKDSCCSHRE  738 (743)
Q Consensus       716 ~~~~~-~~-~laSgs~DG~V~iWd~  738 (743)
                      ....+ .. +++.++.-|.|+||-.
T Consensus       470 n~~HP~~~~~~aG~~s~Gki~vft~  494 (498)
T KOG4328|consen  470 NEFHPMRDTLAAGGNSSGKIYVFTN  494 (498)
T ss_pred             eeecccccceeccCCccceEEEEec
Confidence            11111 23 5555667889998854

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.57  E-value=4.1e-13  Score=133.45  Aligned_cols=221  Identities=14%  Similarity=0.106  Sum_probs=150.7

Q ss_pred             ccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 004603          502 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVL  581 (743)
Q Consensus       502 l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~I  581 (743)
                      +.+..++++.|+.+|.|.++....-.....         +......+-...+|.++|+.++|+  ..+|++|+ ||.|+-
T Consensus        18 ~sp~~~~l~agn~~G~iav~sl~sl~s~sa---------~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~g   85 (325)
T KOG0649|consen   18 ISPSKQYLFAGNLFGDIAVLSLKSLDSGSA---------EPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYG   85 (325)
T ss_pred             hCCcceEEEEecCCCeEEEEEehhhhcccc---------CCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEE
Confidence            344568999999999999985543221111         112223445568999999999997  45677776 699998


Q ss_pred             EECCCCeE----EEEE----cccC-----CCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEE
Q 004603          582 WCTESFTV----KSTL----EEHT-----QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDF  648 (743)
Q Consensus       582 Wd~~t~~~----i~~l----~~H~-----~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~f  648 (743)
                      |-.+....    .+.+    .-|.     -.|.++-..|..+-+++++.|+.++.||+++++. .++++||++.|.++.-
T Consensus        86 w~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i-~r~~rGHtDYvH~vv~  164 (325)
T KOG0649|consen   86 WEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRI-QREYRGHTDYVHSVVG  164 (325)
T ss_pred             eeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEE-EEEEcCCcceeeeeee
Confidence            87643211    1111    1122     3588999999877777778999999999999876 8899999999999988


Q ss_pred             ecCCCcEEEEEeCCCcEEEEECCCCeeeEEEeccC----------c--eeeecCCCEEEEEecCCeEEEEecc-cceEEE
Q 004603          649 HPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCN----------L--MPIILKGCFILNSIFNCYLLLHRIF-LNLLSV  715 (743)
Q Consensus       649 sp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~~----------~--i~~s~~g~~l~sgs~Dg~I~vh~~~-v~~l~v  715 (743)
                      -.....+| +|++||++||||+++++++..+....          .  .++..+..|+++|+.-. +.+|... .....+
T Consensus       165 R~~~~qil-sG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp~-lslwhLrsse~t~v  242 (325)
T KOG0649|consen  165 RNANGQIL-SGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGPK-LSLWHLRSSESTCV  242 (325)
T ss_pred             cccCccee-ecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCCCc-eeEEeccCCCceEE
Confidence            44444455 99999999999999999998876421          1  45667788888887553 4444332 222222


Q ss_pred             EecC--------CCCEEEEEeCCCeEEEeC
Q 004603          716 SEWC--------NPDEISTSSWKDSCCSHR  737 (743)
Q Consensus       716 ~~~~--------~~~~laSgs~DG~V~iWd  737 (743)
                      -+.+        ....++++|.-..|..|.
T Consensus       243 fpipa~v~~v~F~~d~vl~~G~g~~v~~~~  272 (325)
T KOG0649|consen  243 FPIPARVHLVDFVDDCVLIGGEGNHVQSYT  272 (325)
T ss_pred             EecccceeEeeeecceEEEeccccceeeee
Confidence            1111        145677777666666664

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.57  E-value=4.1e-13  Score=144.67  Aligned_cols=201  Identities=19%  Similarity=0.225  Sum_probs=154.0

Q ss_pred             EEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe
Q 004603          509 VDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT  588 (743)
Q Consensus       509 l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~  588 (743)
                      +++|..+|+|.+|..                   ......+....|.+.|.+++.-.+|.+|- |+.|++|..||-. .+
T Consensus       260 viTgDS~G~i~Iw~~-------------------~~~~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~-y~  318 (626)
T KOG2106|consen  260 VITGDSGGNILIWSK-------------------GTNRISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDN-YR  318 (626)
T ss_pred             EEeecCCceEEEEeC-------------------CCceEEeEeeecCCceEEEEEecCccEee-cCccceEEecccc-cc
Confidence            688999999999933                   11223334449999999999999998665 9999999999831 11


Q ss_pred             E------------EEE-----------------------------EcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 004603          589 V------------KST-----------------------------LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE  627 (743)
Q Consensus       589 ~------------i~~-----------------------------l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~  627 (743)
                      .            +++                             ..+|....+.++.+|+...++|++.|+.|++|+ .
T Consensus       319 k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~-~  397 (626)
T KOG2106|consen  319 KLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN-D  397 (626)
T ss_pred             ccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc-C
Confidence            1            111                             136888899999999999999999999999999 2


Q ss_pred             CCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEecc---CceeeecCCCEEEEEecCCeEE
Q 004603          628 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVC---NLMPIILKGCFILNSIFNCYLL  704 (743)
Q Consensus       628 ~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~---~~i~~s~~g~~l~sgs~Dg~I~  704 (743)
                        ..++.+.. -..++.+++|+|.|  .++.|...|...|.|.++...+......   +.+.++|+|.+|+.|+.|+.|.
T Consensus       398 --~k~~wt~~-~~d~~~~~~fhpsg--~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iy  472 (626)
T KOG2106|consen  398 --HKLEWTKI-IEDPAECADFHPSG--VVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIY  472 (626)
T ss_pred             --CceeEEEE-ecCceeEeeccCcc--eEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEE
Confidence              22233322 45678999999998  6778999999999999986666554442   3478999999999999999999


Q ss_pred             EEec----------------ccceEEEEecCCCCEEEEEeCCCeEEEeCC
Q 004603          705 LHRI----------------FLNLLSVSEWCNPDEISTSSWKDSCCSHRE  738 (743)
Q Consensus       705 vh~~----------------~v~~l~v~~~~~~~~laSgs~DG~V~iWd~  738 (743)
                      ++..                .+..+.|+.+  ..++.+-+.|-.|..|+.
T Consensus       473 iy~Vs~~g~~y~r~~k~~gs~ithLDwS~D--s~~~~~~S~d~eiLyW~~  520 (626)
T KOG2106|consen  473 IYRVSANGRKYSRVGKCSGSPITHLDWSSD--SQFLVSNSGDYEILYWKP  520 (626)
T ss_pred             EEEECCCCcEEEEeeeecCceeEEeeecCC--CceEEeccCceEEEEEcc
Confidence            8443                2344555554  789999999999999954

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.57  E-value=7.2e-14  Score=141.71  Aligned_cols=161  Identities=21%  Similarity=0.379  Sum_probs=127.5

Q ss_pred             CceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEE
Q 004603          481 SKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVES  560 (743)
Q Consensus       481 ~~s~~~fs~dg~~~l~~~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~s  560 (743)
                      ...|+.|.|++.               -+++.. |.+|.+|........   ...+.          ...-.+|....++
T Consensus       125 ~i~cvew~Pns~---------------klasm~-dn~i~l~~l~ess~~---vaev~----------ss~s~e~~~~fts  175 (370)
T KOG1007|consen  125 KINCVEWEPNSD---------------KLASMD-DNNIVLWSLDESSKI---VAEVL----------SSESAEMRHSFTS  175 (370)
T ss_pred             ceeeEEEcCCCC---------------eeEEec-cCceEEEEcccCcch---heeec----------ccccccccceecc
Confidence            678999999775               223332 889999976655321   00100          0111135666888


Q ss_pred             EEEcC--CCCEEEEEeCCCcEEEEECCCCeEEEEE-cccCCCEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCeeEEEE
Q 004603          561 CHFSP--DGKLLATGGHDKKAVLWCTESFTVKSTL-EEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDYSLRTF  636 (743)
Q Consensus       561 iafsp--dg~~LaSgs~Dg~V~IWd~~t~~~i~~l-~~H~~~V~~vafsp~-~~~LaSgs~Dg~VrvWDl~~~~~~l~~l  636 (743)
                      -+|+|  +|+.|++.+ |+++..||+++.++...+ ..|...|..+.|+|+ ..+|+||+.||.||+||.|..+.++.++
T Consensus       176 g~WspHHdgnqv~tt~-d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el  254 (370)
T KOG1007|consen  176 GAWSPHHDGNQVATTS-DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQEL  254 (370)
T ss_pred             cccCCCCccceEEEeC-CCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCcccccc
Confidence            99998  888888876 889999999997766655 468888999999997 4568999999999999999999999999


Q ss_pred             ecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECC
Q 004603          637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN  671 (743)
Q Consensus       637 ~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~  671 (743)
                      .+|...|++|.|+|....++.+|+.|..|.+|...
T Consensus       255 ~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~  289 (370)
T KOG1007|consen  255 PGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCAS  289 (370)
T ss_pred             CCCceEEEEEEecCccceEEEecCCCceeEEEecc
Confidence            99999999999999988899999999999999754

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.57  E-value=2.5e-14  Score=158.94  Aligned_cols=193  Identities=18%  Similarity=0.268  Sum_probs=150.6

Q ss_pred             eeEEEeeCCCCCeEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCe
Q 004603          546 TEFQLIPASTSKVESCHFSPDGKLLATGGHD-----KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT  620 (743)
Q Consensus       546 ~~~~~l~~H~~~V~siafspdg~~LaSgs~D-----g~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~  620 (743)
                      .++..+.||...|+|++.+|+++++||++..     -.|+||+..+...+..+.+|.-.|+.++|+||+++|++.+.|.+
T Consensus       516 PEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt  595 (764)
T KOG1063|consen  516 PEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRT  595 (764)
T ss_pred             hhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCce
Confidence            4466778999999999999999999999864     35899999998888899999999999999999999999999999


Q ss_pred             EEEEECCCCCee---EEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCC--eeeEEEe------ccCceeeec
Q 004603          621 VRVWDTENPDYS---LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG--SCAGVFK------VCNLMPIIL  689 (743)
Q Consensus       621 VrvWDl~~~~~~---l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg--~~v~~~~------~~~~i~~s~  689 (743)
                      +.+|........   ....+.|+..|++.+|+|++. .|+|+|.|++|+||.....  +++..+.      ..+.+.+.+
T Consensus       596 ~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~-~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~  674 (764)
T KOG1063|consen  596 VSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEK-YFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLP  674 (764)
T ss_pred             EEeeeeecccchhhhhccccccceEEEEcccCcccc-eeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeec
Confidence            999987543221   234678999999999999976 4889999999999998877  4443321      123333332


Q ss_pred             -----CCCEEEEEecCCeEEEEecc--------------------------cceEEEEecC--------CCCEEEEEeCC
Q 004603          690 -----KGCFILNSIFNCYLLLHRIF--------------------------LNLLSVSEWC--------NPDEISTSSWK  730 (743)
Q Consensus       690 -----~g~~l~sgs~Dg~I~vh~~~--------------------------v~~l~v~~~~--------~~~~laSgs~D  730 (743)
                           .+..++.|-..|.|.+|+-.                          ++.+.|.+.+        ....+++|+.|
T Consensus       675 ~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~D  754 (764)
T KOG1063|consen  675 VDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGDD  754 (764)
T ss_pred             cccccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhheeEeccccccccccccceeEEeeeccc
Confidence                 33467788888999886622                          3456666442        23467999999


Q ss_pred             CeEEEeCCC
Q 004603          731 DSCCSHREL  739 (743)
Q Consensus       731 G~V~iWd~~  739 (743)
                      .++++++-.
T Consensus       755 ~~vri~nv~  763 (764)
T KOG1063|consen  755 ESVRIFNVD  763 (764)
T ss_pred             ceeEEeecc
Confidence            999998754

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.57  E-value=4.8e-15  Score=160.49  Aligned_cols=128  Identities=20%  Similarity=0.400  Sum_probs=113.6

Q ss_pred             eeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEE-cccCCCEEEEEEcC--CCCEEEEEeCCCeEE
Q 004603          546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-EEHTQWITDVRFSP--SLSRLATSSADRTVR  622 (743)
Q Consensus       546 ~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l-~~H~~~V~~vafsp--~~~~LaSgs~Dg~Vr  622 (743)
                      ....++.||++.|.|++|+.+|.+|++|++|-.+.|||.-..+++..+ .+|+..|.|+.|-|  +...++||..|..|+
T Consensus        41 ~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~  120 (758)
T KOG1310|consen   41 DLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIK  120 (758)
T ss_pred             chhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEE
Confidence            445678899999999999999999999999999999999888877766 68999999999999  466889999999999


Q ss_pred             EEECCC---------CCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCC
Q 004603          623 VWDTEN---------PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG  673 (743)
Q Consensus       623 vWDl~~---------~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg  673 (743)
                      +||+..         .......+..|...|..|+-.|++++.|-++++||+||-+|++..
T Consensus       121 lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREp  180 (758)
T KOG1310|consen  121 LFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREP  180 (758)
T ss_pred             EEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCC
Confidence            999975         233456677899999999999999999999999999999999964

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.56  E-value=2.3e-14  Score=157.09  Aligned_cols=192  Identities=15%  Similarity=0.164  Sum_probs=144.9

Q ss_pred             CEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECC
Q 004603          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTE  585 (743)
Q Consensus       507 ~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafsp-dg~~LaSgs~Dg~V~IWd~~  585 (743)
                      ..|+.++.|+.|++|....+.            ......++...+..|..+|+++.|+| -...|++++.|-+|+|||+.
T Consensus       641 ~rLAVa~ddg~i~lWr~~a~g------------l~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~  708 (1012)
T KOG1445|consen  641 ERLAVATDDGQINLWRLTANG------------LPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLA  708 (1012)
T ss_pred             HHeeecccCceEEEEEeccCC------------CCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehh
Confidence            567889999999999665542            12334566788999999999999999 66789999999999999999


Q ss_pred             CCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCC-CCeEEEEEecCCCcEEEEEe---C
Q 004603          586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS-TTVMSLDFHPSKEDLLCSCD---N  661 (743)
Q Consensus       586 t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~-~~V~sl~fsp~g~~lL~Sgs---~  661 (743)
                      +++....|.+|++.|..++|+|+|++++|.+.||+|+||..+....++..-.+.. ..-..|.|.-+|++++|+|-   .
T Consensus       709 ~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~S  788 (1012)
T KOG1445|consen  709 NAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSS  788 (1012)
T ss_pred             hhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccc
Confidence            9999999999999999999999999999999999999999998776665544322 23456889889987777664   2


Q ss_pred             CCcEEEEECCCCe--eeEEEe--ccCc--e-eeecCCC-EEEEEecCCeEEEEeccc
Q 004603          662 NSEIRYWSINNGS--CAGVFK--VCNL--M-PIILKGC-FILNSIFNCYLLLHRIFL  710 (743)
Q Consensus       662 Dg~IrvWDl~tg~--~v~~~~--~~~~--i-~~s~~g~-~l~sgs~Dg~I~vh~~~v  710 (743)
                      ...|.+||..+-.  .+.+..  ....  + .+.+|.. .+++|-.|.+|.++...-
T Consensus       789 eRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~  845 (1012)
T KOG1445|consen  789 ERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIY  845 (1012)
T ss_pred             hhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEecCCCceEEEEEecC
Confidence            3468888876532  222222  1111  1 1344444 566777888888765543

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.56  E-value=1.7e-13  Score=155.07  Aligned_cols=226  Identities=12%  Similarity=0.120  Sum_probs=177.7

Q ss_pred             cccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 004603          501 QLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAV  580 (743)
Q Consensus       501 ~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~  580 (743)
                      +..+.++.+++.-.+...+.|.......++-....             ..++.-...+++|+.++.|++.+.|...|+|-
T Consensus       407 RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~-------------~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id  473 (910)
T KOG1539|consen  407 REKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDP-------------KRFKKDDINATAVCVSFCGNFVFIGYSKGTID  473 (910)
T ss_pred             hhhhhcceeEEecCcceEEEEeccCcccccEEecC-------------ccccccCcceEEEEEeccCceEEEeccCCeEE
Confidence            33445677777777778888866554322211111             11112345689999999999999999999999


Q ss_pred             EEECCCCeEEEEE---cccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEE
Q 004603          581 LWCTESFTVKSTL---EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLC  657 (743)
Q Consensus       581 IWd~~t~~~i~~l---~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~  657 (743)
                      +|++.+|-....|   ..|..+|+.++.+.-++.+++++.+|.+++||..+.. .+..+. -...+.++..+.... +++
T Consensus       474 ~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~-l~~~l~-l~~~~~~iv~hr~s~-l~a  550 (910)
T KOG1539|consen  474 RFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKV-LKKSLR-LGSSITGIVYHRVSD-LLA  550 (910)
T ss_pred             EEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcc-eeeeec-cCCCcceeeeeehhh-hhh
Confidence            9999999888888   4899999999998888899999999999999998744 344444 345677888887754 677


Q ss_pred             EEeCCCcEEEEECCCCeeeEEEecc----CceeeecCCCEEEEEecCCeEEEEeccc-----------ceEEEEecCCCC
Q 004603          658 SCDNNSEIRYWSINNGSCAGVFKVC----NLMPIILKGCFILNSIFNCYLLLHRIFL-----------NLLSVSEWCNPD  722 (743)
Q Consensus       658 Sgs~Dg~IrvWDl~tg~~v~~~~~~----~~i~~s~~g~~l~sgs~Dg~I~vh~~~v-----------~~l~v~~~~~~~  722 (743)
                      .+..|-.|+|+|+.+.+.++.|.+|    +.++|++||+||++++.|++|++||...           .+..++..+++.
T Consensus       551 ~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD  630 (910)
T KOG1539|consen  551 IALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGD  630 (910)
T ss_pred             hhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecCCcceeeEECCCCC
Confidence            7778999999999999999999987    4589999999999999999999999764           344555566688


Q ss_pred             EEEEEeCC-CeEEEeCCCccc
Q 004603          723 EISTSSWK-DSCCSHRELYLY  742 (743)
Q Consensus       723 ~laSgs~D-G~V~iWd~~~~~  742 (743)
                      ++|+.-.| .-|++|-...+|
T Consensus       631 ~LAT~Hvd~~gIylWsNkslF  651 (910)
T KOG1539|consen  631 FLATVHVDQNGIYLWSNKSLF  651 (910)
T ss_pred             EEEEEEecCceEEEEEchhHh
Confidence            99999999 579999876655

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.55  E-value=8.3e-14  Score=146.98  Aligned_cols=158  Identities=23%  Similarity=0.380  Sum_probs=132.1

Q ss_pred             CEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC-
Q 004603          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE-  585 (743)
Q Consensus       507 ~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~-  585 (743)
                      +++++|+.|..|++|....+....          ..........+..|...|++|.|+|+|.+||+|+++|.|.+|-.. 
T Consensus        27 ~~laT~G~D~~iriW~v~r~~~~~----------~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~   96 (434)
T KOG1009|consen   27 NKLATAGGDKDIRIWKVNRSEPGG----------GDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGD   96 (434)
T ss_pred             cceecccCccceeeeeeeecCCCC----------CceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecC
Confidence            389999999999999766554222          124567788899999999999999999999999999999999654 


Q ss_pred             -------C--------CeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEec
Q 004603          586 -------S--------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHP  650 (743)
Q Consensus       586 -------t--------~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp  650 (743)
                             +        .....++.+|...|+.++|+|++.++++++-|..+++||+..+.. +..+.+|...|..++|.|
T Consensus        97 ~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l-~~~~~dh~~yvqgvawDp  175 (434)
T KOG1009|consen   97 VRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQL-LAILDDHEHYVQGVAWDP  175 (434)
T ss_pred             cCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEecccee-Eeeccccccccceeecch
Confidence                   2        234567789999999999999999999999999999999999775 788899999999999999


Q ss_pred             CCCcEEEEEeCCCcEEEEECCCCeee
Q 004603          651 SKEDLLCSCDNNSEIRYWSINNGSCA  676 (743)
Q Consensus       651 ~g~~lL~Sgs~Dg~IrvWDl~tg~~v  676 (743)
                      .+. ++++-+.|...+++++.....+
T Consensus       176 l~q-yv~s~s~dr~~~~~~~~~~~~~  200 (434)
T KOG1009|consen  176 LNQ-YVASKSSDRHPEGFSAKLKQVI  200 (434)
T ss_pred             hhh-hhhhhccCcccceeeeeeeeee
Confidence            876 5557777887888877655433

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.55  E-value=7.7e-14  Score=144.51  Aligned_cols=148  Identities=16%  Similarity=0.220  Sum_probs=118.6

Q ss_pred             CCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcC--CCCEEEEEeCCCcEEEEE
Q 004603          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP--DGKLLATGGHDKKAVLWC  583 (743)
Q Consensus       506 ~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafsp--dg~~LaSgs~Dg~V~IWd  583 (743)
                      ...++++-..+.|++|+...                   ...+..+++|...+..++|..  ....+.+|+.||+|++||
T Consensus        40 e~~vav~lSngsv~lyd~~t-------------------g~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD  100 (376)
T KOG1188|consen   40 ETAVAVSLSNGSVRLYDKGT-------------------GQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWD  100 (376)
T ss_pred             ceeEEEEecCCeEEEEeccc-------------------hhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEE
Confidence            36678888889999994432                   345677888888899999977  467899999999999999


Q ss_pred             CCCCeEE--EEEcccC-CCEEEEEEcCCCCEEEEEeC----CCeEEEEECCCCCeeEE-EEecCCCCeEEEEEecCCCcE
Q 004603          584 TESFTVK--STLEEHT-QWITDVRFSPSLSRLATSSA----DRTVRVWDTENPDYSLR-TFTGHSTTVMSLDFHPSKEDL  655 (743)
Q Consensus       584 ~~t~~~i--~~l~~H~-~~V~~vafsp~~~~LaSgs~----Dg~VrvWDl~~~~~~l~-~l~~h~~~V~sl~fsp~g~~l  655 (743)
                      +++....  ..+..|. .+..|++.+..+..+++|..    |-.|.+||+|.....+. .+..|...|++|+|||..+.+
T Consensus       101 ~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnl  180 (376)
T KOG1188|consen  101 IRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNL  180 (376)
T ss_pred             eecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCe
Confidence            9875443  3445665 56677777767778888754    77899999998765444 445799999999999999999


Q ss_pred             EEEEeCCCcEEEEECCC
Q 004603          656 LCSCDNNSEIRYWSINN  672 (743)
Q Consensus       656 L~Sgs~Dg~IrvWDl~t  672 (743)
                      |+|||.||.|.|||+..
T Consensus       181 LlSGSvDGLvnlfD~~~  197 (376)
T KOG1188|consen  181 LLSGSVDGLVNLFDTKK  197 (376)
T ss_pred             EEeecccceEEeeecCC
Confidence            99999999999999863

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.55  E-value=1.5e-14  Score=168.79  Aligned_cols=220  Identities=18%  Similarity=0.318  Sum_probs=164.8

Q ss_pred             ccccCCCCCceEEEEecCCC---cc---------ccccCcc--ccCC-CCEEEEeeCCCcEEEEecCCCCCCCCcccccc
Q 004603          473 TLQHNGASSKSLLMFGSDGM---GS---------LTSAPNQ--LTDM-DRFVDDGSLDDNVESFLSPDDADPRDRVGRSA  537 (743)
Q Consensus       473 ~l~~~~s~~~s~~~fs~dg~---~~---------l~~~~~~--l~~~-~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~  537 (743)
                      .+...|..+..+..|+++..   ..         +..+...  |... ++++++|+.|+.|.+|+.......        
T Consensus        81 GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP--------  152 (1049)
T KOG0307|consen   81 GLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETP--------  152 (1049)
T ss_pred             ceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCC--------
Confidence            35556667777777777653   00         0011111  1122 469999999999999977664211        


Q ss_pred             ccCCCceeeeEEEeeCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeEEEEEcccCC--CEEEEEEcCC-CCEEE
Q 004603          538 EVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ--WITDVRFSPS-LSRLA  613 (743)
Q Consensus       538 ~~~~~~~~~~~~~l~~H~~~V~siafsp-dg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~--~V~~vafsp~-~~~La  613 (743)
                           ++..    -..-.+.|.|++|+. ....|++++.+|++.|||++..+.+-.+..|..  .+..|+|||+ ...|+
T Consensus       153 -----~~~~----~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~  223 (1049)
T KOG0307|consen  153 -----FTPG----SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLL  223 (1049)
T ss_pred             -----CCCC----CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeee
Confidence                 1111    112345699999987 556899999999999999998888877776654  4778999997 55677


Q ss_pred             EEeCCC---eEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEecc----Ccee
Q 004603          614 TSSADR---TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVC----NLMP  686 (743)
Q Consensus       614 Sgs~Dg---~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~----~~i~  686 (743)
                      +++.|.   .|.+||+|....+++++.+|...|.++.|++.+.++|+||+.|+.|.+|+.++++.+..+...    ..+.
T Consensus       224 ~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~  303 (1049)
T KOG0307|consen  224 VASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQ  303 (1049)
T ss_pred             eecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeee
Confidence            776643   699999999888899999999999999999999889999999999999999999999988863    2355


Q ss_pred             eecCCC-EEEEEecCCeEEEEecc
Q 004603          687 IILKGC-FILNSIFNCYLLLHRIF  709 (743)
Q Consensus       687 ~s~~g~-~l~sgs~Dg~I~vh~~~  709 (743)
                      |.|..- .+++.+.||.|.|....
T Consensus       304 w~pr~P~~~A~asfdgkI~I~sl~  327 (1049)
T KOG0307|consen  304 WCPRNPSVMAAASFDGKISIYSLQ  327 (1049)
T ss_pred             ecCCCcchhhhheeccceeeeeee
Confidence            665444 67888999999995443

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.54  E-value=7.5e-13  Score=136.20  Aligned_cols=234  Identities=14%  Similarity=0.141  Sum_probs=171.9

Q ss_pred             EEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEc
Q 004603          485 LMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFS  564 (743)
Q Consensus       485 ~~fs~dg~~~l~~~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafs  564 (743)
                      ..|+|||.               -+.+-+.|+.+.+|..+.+....+.-..+.    ......++...  ...|+..+|-
T Consensus        55 ckWSPDGS---------------ciL~~sedn~l~~~nlP~dlys~~~~~~~~----~~~~~~~r~~e--g~tvydy~wY  113 (406)
T KOG2919|consen   55 CKWSPDGS---------------CILSLSEDNCLNCWNLPFDLYSKKADGPLN----FSKHLSYRYQE--GETVYDYCWY  113 (406)
T ss_pred             ceeCCCCc---------------eEEeecccCeeeEEecChhhcccCCCCccc----cccceeEEecc--CCEEEEEEee
Confidence            57999884               677888999999997776543322211110    00011122222  3458888885


Q ss_pred             -------CCCCEEEEEeCCCcEEEEECCCCeEEEEEcc--cCC---CEEEEEEcCCCCEEEEEeCCCeEEEEEC-CCCCe
Q 004603          565 -------PDGKLLATGGHDKKAVLWCTESFTVKSTLEE--HTQ---WITDVRFSPSLSRLATSSADRTVRVWDT-ENPDY  631 (743)
Q Consensus       565 -------pdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~--H~~---~V~~vafsp~~~~LaSgs~Dg~VrvWDl-~~~~~  631 (743)
                             |+..++++.+.|.-|++||.-+++....+.+  |-+   ...+++|+|||.+|+.| ...+||+||+ |.+..
T Consensus       114 s~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~  192 (406)
T KOG2919|consen  114 SRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRD  192 (406)
T ss_pred             eccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCC
Confidence                   5778999999999999999999998877754  322   34689999999999876 5889999999 44443


Q ss_pred             e-EEEEe-----cCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEecc----CceeeecCCCEEEEEec-C
Q 004603          632 S-LRTFT-----GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVC----NLMPIILKGCFILNSIF-N  700 (743)
Q Consensus       632 ~-l~~l~-----~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~----~~i~~s~~g~~l~sgs~-D  700 (743)
                      | +.+..     +..+.|.+++|+|....+++.++....+-||.-....++..+.+|    +.+.+.++|+.|++|.. |
T Consensus       193 c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~  272 (406)
T KOG2919|consen  193 CPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKD  272 (406)
T ss_pred             CcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCC
Confidence            2 22222     236788999999998889999999999989888888888877765    55889999999999865 6


Q ss_pred             CeEEEEeccc----------------ceEEEEecCCCCEEEEEeCCCeEEEeCCCc
Q 004603          701 CYLLLHRIFL----------------NLLSVSEWCNPDEISTSSWKDSCCSHRELY  740 (743)
Q Consensus       701 g~I~vh~~~v----------------~~l~v~~~~~~~~laSgs~DG~V~iWd~~~  740 (743)
                      ..|..|++.-                -.+-+...+.+..|++|+.||.|++||..-
T Consensus       273 dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~  328 (406)
T KOG2919|consen  273 DKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKD  328 (406)
T ss_pred             CeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCC
Confidence            6788888642                235556666688999999999999998753

>KOG4594 consensus Sequence-specific single-stranded-DNA-binding protein [Replication, recombination and repair; Transcription; General function prediction only]

Probab=99.53  E-value=4.1e-15  Score=149.47  Aligned_cols=77  Identities=32%  Similarity=0.735  Sum_probs=65.2

Q ss_pred             ccchHHHHHHHHHHHHhhcCChHHHHHHHHhcCCCCCCCCCCCCCCccHHHHHHHHHhhhhhccc----ccccccchhhH
Q 004603            4 NNWEADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFWDIFIARTN----EKHSESAASYI   79 (743)
Q Consensus         4 ~~~~~~~~l~~yiy~yl~k~~~~~~A~~~~~e~~~~~~~~~~~~~~~fL~eWw~~fwd~f~A~~~----~~~s~~a~qYi   79 (743)
                      ++-.||++|..||||||++-+..++|+.|+.|..+..+ +.+-.+.+||.+|||+|||+|+|...    ..|+..++.+.
T Consensus        12 Sd~qArekLa~YvYEYLlhvgaqksaqtflseirwekn-itlge~p~FLhsWWcvFwDLYcAAPeRRd~c~HSsEAKaFh   90 (354)
T KOG4594|consen   12 SDSQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKN-ITLGEPPGFLHSWWCVFWDLYCAAPERRDTCEHSSEAKAFH   90 (354)
T ss_pred             cchhHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhh-hhccCCcchhhhhHHHHHHHhhcCccccCcccccHhhhhhh
Confidence            56789999999999999999999999999999887765 55667789999999999999999443    46666777665


Q ss_pred             HH
Q 004603           80 ES   81 (743)
Q Consensus        80 q~   81 (743)
                      ++
T Consensus        91 dy   92 (354)
T KOG4594|consen   91 DY   92 (354)
T ss_pred             hh
Confidence            54

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.53  E-value=1.2e-13  Score=151.26  Aligned_cols=190  Identities=17%  Similarity=0.204  Sum_probs=136.1

Q ss_pred             CceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCC--EEEEEeCCC
Q 004603          542 GFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS--RLATSSADR  619 (743)
Q Consensus       542 ~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~--~LaSgs~Dg  619 (743)
                      .+...+...+++|++.|.||...|.|.+|++|+.||+|+||-+.++.|++++.- .+.|.||+|+|.+.  .||++-.+.
T Consensus       387 PFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~-d~~I~~vaw~P~~~~~vLAvA~~~~  465 (733)
T KOG0650|consen  387 PFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF-DSEIRSVAWNPLSDLCVLAVAVGEC  465 (733)
T ss_pred             CCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee-cceeEEEEecCCCCceeEEEEecCc
Confidence            455566777899999999999999999999999999999999999999988753 45688888888543  333332222


Q ss_pred             eEEEEEC-------------------------------------------------------------------------
Q 004603          620 TVRVWDT-------------------------------------------------------------------------  626 (743)
Q Consensus       620 ~VrvWDl-------------------------------------------------------------------------  626 (743)
                       +.|-+.                                                                         
T Consensus       466 -~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~  544 (733)
T KOG0650|consen  466 -VLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSG  544 (733)
T ss_pred             -eEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCC
Confidence             322221                                                                         


Q ss_pred             ---------CCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEec----cCceeeecCCCE
Q 004603          627 ---------ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKV----CNLMPIILKGCF  693 (743)
Q Consensus       627 ---------~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~----~~~i~~s~~g~~  693 (743)
                               ..... ...|....+.|.++.|||...++|++.  -..|||||+...+.++.+..    ...+++++.|.-
T Consensus       545 ~~~VliHQLSK~~s-Q~PF~kskG~vq~v~FHPs~p~lfVaT--q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDn  621 (733)
T KOG0650|consen  545 NKSVLIHQLSKRKS-QSPFRKSKGLVQRVKFHPSKPYLFVAT--QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDN  621 (733)
T ss_pred             cceEEEEecccccc-cCchhhcCCceeEEEecCCCceEEEEe--ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCe
Confidence                     11000 111222345688999999988777543  45799999988766554432    356889999999


Q ss_pred             EEEEecCCeEEEEeccc---------------ceEEEEecCCCCEEEEEeCCCeEEEeCC
Q 004603          694 ILNSIFNCYLLLHRIFL---------------NLLSVSEWCNPDEISTSSWKDSCCSHRE  738 (743)
Q Consensus       694 l~sgs~Dg~I~vh~~~v---------------~~l~v~~~~~~~~laSgs~DG~V~iWd~  738 (743)
                      |+.|+.|+.+.+++...               +.+++...  -.++++|+.||+|.|+-.
T Consensus       622 li~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~r--yPLfas~sdDgtv~Vfhg  679 (733)
T KOG0650|consen  622 LILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKR--YPLFASGSDDGTVIVFHG  679 (733)
T ss_pred             EEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccc--cceeeeecCCCcEEEEee
Confidence            99999999999966543               33444333  458999999999999843

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.52  E-value=2.9e-13  Score=150.63  Aligned_cols=249  Identities=14%  Similarity=0.162  Sum_probs=176.9

Q ss_pred             cccCCCCCceEEEEecCCCccc----------c-----ccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccc
Q 004603          474 LQHNGASSKSLLMFGSDGMGSL----------T-----SAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAE  538 (743)
Q Consensus       474 l~~~~s~~~s~~~fs~dg~~~l----------~-----~~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~  538 (743)
                      ...+++.++++++|.|+....+          +     +-.....+..+++.+-+.-|..++|                .
T Consensus       281 ~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlW----------------k  344 (764)
T KOG1063|consen  281 DLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLW----------------K  344 (764)
T ss_pred             hheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEE----------------e
Confidence            3455677888888888765221          1     1111122233444444455555555                3


Q ss_pred             cCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC----CeEEEEEcccCCCEEEEEEcCCCCEEEE
Q 004603          539 VGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES----FTVKSTLEEHTQWITDVRFSPSLSRLAT  614 (743)
Q Consensus       539 ~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t----~~~i~~l~~H~~~V~~vafsp~~~~LaS  614 (743)
                      ..+...+.....+.||.+.|.+|+|+|.|.+|++.|.|-+-|||-.-.    .-.+..-..|...++|++|-+....|++
T Consensus       345 t~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVS  424 (764)
T KOG1063|consen  345 TKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVS  424 (764)
T ss_pred             ccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeee
Confidence            233445566677889999999999999999999999999999986431    1223333458888999999887678999


Q ss_pred             EeCCCeEEEEECCC-------------------------------------------CCe--------------------
Q 004603          615 SSADRTVRVWDTEN-------------------------------------------PDY--------------------  631 (743)
Q Consensus       615 gs~Dg~VrvWDl~~-------------------------------------------~~~--------------------  631 (743)
                      |...+.+|+|+.-.                                           +..                    
T Consensus       425 gAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP  504 (764)
T KOG1063|consen  425 GADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPP  504 (764)
T ss_pred             cccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCC
Confidence            99999999999620                                           000                    


Q ss_pred             ------------eEEEEecCCCCeEEEEEecCCCcEEEEEeCC-----CcEEEEECCCCeeeEEEecc----CceeeecC
Q 004603          632 ------------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-----SEIRYWSINNGSCAGVFKVC----NLMPIILK  690 (743)
Q Consensus       632 ------------~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~D-----g~IrvWDl~tg~~v~~~~~~----~~i~~s~~  690 (743)
                                  .++.+.||.-.|++++.+|++. +++|++..     ..|++|+..+...+..+.+|    +.+.|+||
T Consensus       505 ~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gn-liASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpd  583 (764)
T KOG1063|consen  505 TEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGN-LIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPD  583 (764)
T ss_pred             hHHHHHHhccchhhHHhccCceeEEEEEecCCCC-EEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCC
Confidence                        0233448989999999999976 78787654     36999999988877778776    45889999


Q ss_pred             CCEEEEEecCCeEEEEeccc--------------ceEEE--EecCCCCEEEEEeCCCeEEEeCCC
Q 004603          691 GCFILNSIFNCYLLLHRIFL--------------NLLSV--SEWCNPDEISTSSWKDSCCSHREL  739 (743)
Q Consensus       691 g~~l~sgs~Dg~I~vh~~~v--------------~~l~v--~~~~~~~~laSgs~DG~V~iWd~~  739 (743)
                      |+||++.+.|+++.+|....              +.+.|  ++.++..+++|+|.|.+|++|...
T Consensus       584 g~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~  648 (764)
T KOG1063|consen  584 GRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEP  648 (764)
T ss_pred             CcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEecc
Confidence            99999999999999975421              22333  223346679999999999999654

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.49  E-value=9.9e-12  Score=133.41  Aligned_cols=193  Identities=26%  Similarity=0.334  Sum_probs=147.6

Q ss_pred             eeeEEEeeCCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCC-EEEEEeCCCeEE
Q 004603          545 FTEFQLIPASTSKVESCHFSPDGKLLATGGH-DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVR  622 (743)
Q Consensus       545 ~~~~~~l~~H~~~V~siafspdg~~LaSgs~-Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~-~LaSgs~Dg~Vr  622 (743)
                      ......+..|...|.+++|+|++..+++++. |+.+++|++..++.+..+.+|...|.+++|+|++. .+++++.|+.|+
T Consensus       145 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~  224 (466)
T COG2319         145 GKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIR  224 (466)
T ss_pred             CeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEE
Confidence            3567778899999999999999998988886 99999999999889999999999999999999887 556668999999


Q ss_pred             EEECCCCCeeEE-EEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCee-eEEEecc----CceeeecCCCEEEE
Q 004603          623 VWDTENPDYSLR-TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-AGVFKVC----NLMPIILKGCFILN  696 (743)
Q Consensus       623 vWDl~~~~~~l~-~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~-v~~~~~~----~~i~~s~~g~~l~s  696 (743)
                      +||...+.. +. .+.+|...+ ...|+|++ .++++++.|+.+++||++.... +..+..|    ..+.+.|++..+++
T Consensus       225 ~wd~~~~~~-~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  301 (466)
T COG2319         225 LWDLSTGKL-LRSTLSGHSDSV-VSSFSPDG-SLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLAS  301 (466)
T ss_pred             EEECCCCcE-EeeecCCCCcce-eEeECCCC-CEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEE
Confidence            999886554 55 688888875 44899998 4666999999999999997664 4444333    23567788888888


Q ss_pred             EecCCeEEEEecccce--------------EEEEecCCCCEEEEE-eCCCeEEEeCCCc
Q 004603          697 SIFNCYLLLHRIFLNL--------------LSVSEWCNPDEISTS-SWKDSCCSHRELY  740 (743)
Q Consensus       697 gs~Dg~I~vh~~~v~~--------------l~v~~~~~~~~laSg-s~DG~V~iWd~~~  740 (743)
                      ++.|+.+.+|+.....              ..+....+...++.+ ..|+.+.+|+...
T Consensus       302 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  360 (466)
T COG2319         302 GSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRT  360 (466)
T ss_pred             eeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCC
Confidence            9999888887543221              111111111344455 6888888887654

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.49  E-value=1.7e-12  Score=132.04  Aligned_cols=185  Identities=17%  Similarity=0.221  Sum_probs=138.2

Q ss_pred             eCCCCCeEEEEEcCCC-----CEEEEEeCCCcEEEEECCCCe----EEEEE-----cccCCCEEEEEEcC-CCCEEEEEe
Q 004603          552 PASTSKVESCHFSPDG-----KLLATGGHDKKAVLWCTESFT----VKSTL-----EEHTQWITDVRFSP-SLSRLATSS  616 (743)
Q Consensus       552 ~~H~~~V~siafspdg-----~~LaSgs~Dg~V~IWd~~t~~----~i~~l-----~~H~~~V~~vafsp-~~~~LaSgs  616 (743)
                      -.|..+++.+-|.|+.     .+|||++  ..+|||.+...+    +...+     ..+.+++++..|+. +.++|.+++
T Consensus        93 fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSS  170 (364)
T KOG0290|consen   93 FDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSS  170 (364)
T ss_pred             CCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeec
Confidence            3688899999999975     3677665  369999886321    11111     34678899999987 678999999


Q ss_pred             CCCeEEEEECCCCC--eeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEE-eccC-c-----eee
Q 004603          617 ADRTVRVWDTENPD--YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF-KVCN-L-----MPI  687 (743)
Q Consensus       617 ~Dg~VrvWDl~~~~--~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~-~~~~-~-----i~~  687 (743)
                      -|-+..|||+.++.  .....+..|...|..|+|...+..+|++++.||.||+||+|..+.-..+ .... .     +++
T Consensus       171 iDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLsw  250 (364)
T KOG0290|consen  171 IDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSW  250 (364)
T ss_pred             ccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeecc
Confidence            99999999999852  2345678899999999999998999999999999999999976543332 2221 1     122


Q ss_pred             e-cCCCEEEEEecCCe-EEE---------------EecccceEEEEecCCCCEEEEEeCCCeEEEeCCC
Q 004603          688 I-LKGCFILNSIFNCY-LLL---------------HRIFLNLLSVSEWCNPDEISTSSWKDSCCSHREL  739 (743)
Q Consensus       688 s-~~g~~l~sgs~Dg~-I~v---------------h~~~v~~l~v~~~~~~~~laSgs~DG~V~iWd~~  739 (743)
                      . .+.+|+++...|.. |.+               |...++.++|.+.. ...|+|||.|..+.+||-.
T Consensus       251 nkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS-~~hictaGDD~qaliWDl~  318 (364)
T KOG0290|consen  251 NKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHS-SSHICTAGDDCQALIWDLQ  318 (364)
T ss_pred             CcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCC-CceeeecCCcceEEEEecc
Confidence            2 35556666544432 222               77888899998876 7899999999999999864

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.49  E-value=1.3e-14  Score=163.43  Aligned_cols=120  Identities=23%  Similarity=0.467  Sum_probs=111.4

Q ss_pred             eeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 004603          546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD  625 (743)
Q Consensus       546 ~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWD  625 (743)
                      +.++.+.+|...|+|+.|...|++|++|++|..|+||.+++..++..+.||.+.|+.++.+.+..++++++.|..|++|.
T Consensus       181 k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWr  260 (1113)
T KOG0644|consen  181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWR  260 (1113)
T ss_pred             HHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEe
Confidence            45667789999999999999999999999999999999999999999999999999999998888999999999999999


Q ss_pred             CCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECC
Q 004603          626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN  671 (743)
Q Consensus       626 l~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~  671 (743)
                      +.++. ++..+.+|++.|++|+|+|-     .+.+.||++++||.+
T Consensus       261 l~~~~-pvsvLrghtgavtaiafsP~-----~sss~dgt~~~wd~r  300 (1113)
T KOG0644|consen  261 LPDGA-PVSVLRGHTGAVTAIAFSPR-----ASSSDDGTCRIWDAR  300 (1113)
T ss_pred             cCCCc-hHHHHhccccceeeeccCcc-----ccCCCCCceEecccc
Confidence            99855 58999999999999999996     377889999999987

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.49  E-value=8.2e-13  Score=135.92  Aligned_cols=185  Identities=17%  Similarity=0.184  Sum_probs=137.4

Q ss_pred             CCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeC-CCeEEEEECCCCCe
Q 004603          554 STSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTENPDY  631 (743)
Q Consensus       554 H~~~V~siafsp-dg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~-Dg~VrvWDl~~~~~  631 (743)
                      ..+.|.|++|+| +.+.++.|+.-..+-||.-....++..+.+|.+.|+.++|+++|+.|++|.. |..|.+||+|..+.
T Consensus       206 q~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~  285 (406)
T KOG2919|consen  206 QKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRD  285 (406)
T ss_pred             ccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccc
Confidence            367899999999 6679999999999999998889999999999999999999999999999986 88999999999888


Q ss_pred             eEEEEecCCC-CeEEEEE--ecCCCcEEEEEeCCCcEEEEECCC-CeeeEEEecc----CceeeecCCCEEEEEecCCeE
Q 004603          632 SLRTFTGHST-TVMSLDF--HPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFKVC----NLMPIILKGCFILNSIFNCYL  703 (743)
Q Consensus       632 ~l~~l~~h~~-~V~sl~f--sp~g~~lL~Sgs~Dg~IrvWDl~t-g~~v~~~~~~----~~i~~s~~g~~l~sgs~Dg~I  703 (743)
                      ++..+..|.. .-..|-|  .|++. +|++|+.||.|++||+.. +..+..+..+    +.+.++|.-..+++++.....
T Consensus       286 pv~~L~rhv~~TNQRI~FDld~~~~-~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGqr~f  364 (406)
T KOG2919|consen  286 PVYALERHVGDTNQRILFDLDPKGE-ILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQRIF  364 (406)
T ss_pred             hhhhhhhhccCccceEEEecCCCCc-eeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCceee
Confidence            8888888876 3344444  56665 888999999999999998 5555555433    456777776666666655444


Q ss_pred             EEEecccceEE----EEecCCCCEEEEEeCCCeEEEeCCC
Q 004603          704 LLHRIFLNLLS----VSEWCNPDEISTSSWKDSCCSHREL  739 (743)
Q Consensus       704 ~vh~~~v~~l~----v~~~~~~~~laSgs~DG~V~iWd~~  739 (743)
                      ..-+.....+.    .........+.++.....+..||+.
T Consensus       365 ~~~~dD~ge~~~el~~~ad~n~~qlw~~y~~a~~~w~d~~  404 (406)
T KOG2919|consen  365 KYPKDDNGELETELEEEADENEKQLWTGYVSALQVWMDGQ  404 (406)
T ss_pred             cCCCcccccccccccchhhhhhhheeeeecccceeeecCC
Confidence            44222111111    1111113456777777777777764

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.48  E-value=4e-12  Score=140.37  Aligned_cols=223  Identities=16%  Similarity=0.225  Sum_probs=156.8

Q ss_pred             CCCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCC
Q 004603          478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK  557 (743)
Q Consensus       478 ~s~~~s~~~fs~dg~~~l~~~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~  557 (743)
                      +.+.+..+.|.|||.              .++..  .++.+.+|+..++                   ....++++|.+.
T Consensus        11 ~~hci~d~afkPDGs--------------qL~lA--Ag~rlliyD~ndG-------------------~llqtLKgHKDt   55 (1081)
T KOG1538|consen   11 AEHCINDIAFKPDGT--------------QLILA--AGSRLLVYDTSDG-------------------TLLQPLKGHKDT   55 (1081)
T ss_pred             cccchheeEECCCCc--------------eEEEe--cCCEEEEEeCCCc-------------------ccccccccccce
Confidence            334566788999886              33333  3456888866555                   567889999999


Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECCCCe--------EEEEE---------------------------cc--cCCCE
Q 004603          558 VESCHFSPDGKLLATGGHDKKAVLWCTESFT--------VKSTL---------------------------EE--HTQWI  600 (743)
Q Consensus       558 V~siafspdg~~LaSgs~Dg~V~IWd~~t~~--------~i~~l---------------------------~~--H~~~V  600 (743)
                      |+|++|+.||++||+|+.|+.|.||+-.-..        .+..+                           ..  ....|
T Consensus        56 VycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~  135 (1081)
T KOG1538|consen   56 VYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRI  135 (1081)
T ss_pred             EEEEEEccCCceeccCCCceeEEEecccccceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeE
Confidence            9999999999999999999999999754211        11110                           01  23467


Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeE--EEEecCCCCeEEEEEecCC----CcEEEEEeCCCcEEEEECCCCe
Q 004603          601 TDVRFSPSLSRLATSSADRTVRVWDTENPDYSL--RTFTGHSTTVMSLDFHPSK----EDLLCSCDNNSEIRYWSINNGS  674 (743)
Q Consensus       601 ~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l--~~l~~h~~~V~sl~fsp~g----~~lL~Sgs~Dg~IrvWDl~tg~  674 (743)
                      .+++|..||.+|+-|-.||+|.+-+-. ++..+  ..-.|..++|++++|+|..    ..+++......++.+|.+. |+
T Consensus       136 ~~CsWtnDGqylalG~~nGTIsiRNk~-gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~  213 (1081)
T KOG1538|consen  136 ICCSWTNDGQYLALGMFNGTISIRNKN-GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GK  213 (1081)
T ss_pred             EEeeecCCCcEEEEeccCceEEeecCC-CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ce
Confidence            888899999999999999999987643 22222  2333577899999999963    2477778888888888876 44


Q ss_pred             eeEEEec----cCceeeecCCCEEEEEecCCeEEEEecccc-----------eEEEEecCCCCEEEEEeCCCeEEEeC
Q 004603          675 CAGVFKV----CNLMPIILKGCFILNSIFNCYLLLHRIFLN-----------LLSVSEWCNPDEISTSSWKDSCCSHR  737 (743)
Q Consensus       675 ~v~~~~~----~~~i~~s~~g~~l~sgs~Dg~I~vh~~~v~-----------~l~v~~~~~~~~laSgs~DG~V~iWd  737 (743)
                      .+..-+.    ..++.+.++|.|++.|+.|+.+.+.+-...           ...+...+++.+++.|.-||+|--|+
T Consensus       214 ~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyN  291 (1081)
T KOG1538|consen  214 QIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYN  291 (1081)
T ss_pred             eecccccCCCCchhheeccCCcEEEEccCCCceEEEeecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhh
Confidence            4432221    234677899999999999999888432211           11222234477999999999997664

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.47  E-value=5.7e-12  Score=125.39  Aligned_cols=222  Identities=15%  Similarity=0.153  Sum_probs=143.6

Q ss_pred             CCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004603          505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT  584 (743)
Q Consensus       505 ~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~  584 (743)
                      +++++.+|+ ||.|+-|...+.... ....++|+........     ...--.|+++...|..+.|+.++.|+.++-||+
T Consensus        71 ~d~~Lls~g-dG~V~gw~W~E~~es-~~~K~lwe~~~P~~~~-----~~evPeINam~ldP~enSi~~AgGD~~~y~~dl  143 (325)
T KOG0649|consen   71 HDDFLLSGG-DGLVYGWEWNEEEES-LATKRLWEVKIPMQVD-----AVEVPEINAMWLDPSENSILFAGGDGVIYQVDL  143 (325)
T ss_pred             ehhheeecc-CceEEEeeehhhhhh-ccchhhhhhcCccccC-----cccCCccceeEeccCCCcEEEecCCeEEEEEEe
Confidence            356777776 499999977665422 3334455443332111     011234889999997777777778999999999


Q ss_pred             CCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEec---------C-CCCeEEEEEecCCCc
Q 004603          585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG---------H-STTVMSLDFHPSKED  654 (743)
Q Consensus       585 ~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~---------h-~~~V~sl~fsp~g~~  654 (743)
                      ++++..++++||++.|.++.-......++||+.||+||+||.++.++ +.++..         | ...|.+++.+.+  +
T Consensus       144 E~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~-v~~ie~yk~~~~lRp~~g~wigala~~ed--W  220 (325)
T KOG0649|consen  144 EDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKH-VSMIEPYKNPNLLRPDWGKWIGALAVNED--W  220 (325)
T ss_pred             cCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccce-eEEeccccChhhcCcccCceeEEEeccCc--e
Confidence            99999999999999999999866667899999999999999999765 555432         2 235677776544  3


Q ss_pred             EEEEEeCCCcEEEEECCCCeeeEEEeccCcee-eecCCCEEEEEecCCeEEEEecccc-----------eEEEEecCC-C
Q 004603          655 LLCSCDNNSEIRYWSINNGSCAGVFKVCNLMP-IILKGCFILNSIFNCYLLLHRIFLN-----------LLSVSEWCN-P  721 (743)
Q Consensus       655 lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~~~i~-~s~~g~~l~sgs~Dg~I~vh~~~v~-----------~l~v~~~~~-~  721 (743)
                      ++ +|+ ...+.+|.++..++..+|.....+. +.-+...+++++..+.|.-|.....           ++..+.... -
T Consensus       221 lv-CGg-Gp~lslwhLrsse~t~vfpipa~v~~v~F~~d~vl~~G~g~~v~~~~l~Gvl~a~ip~~s~~c~s~s~~~~p~  298 (325)
T KOG0649|consen  221 LV-CGG-GPKLSLWHLRSSESTCVFPIPARVHLVDFVDDCVLIGGEGNHVQSYTLNGVLQANIPVESTACYSASWQTSPI  298 (325)
T ss_pred             EE-ecC-CCceeEEeccCCCceEEEecccceeEeeeecceEEEeccccceeeeeeccEEEEeccCCccceeeecccCCce
Confidence            44 443 5679999999998888877542211 2223344455554333333322211           111111111 2


Q ss_pred             CEEEEEeCCCeEEEeCC
Q 004603          722 DEISTSSWKDSCCSHRE  738 (743)
Q Consensus       722 ~~laSgs~DG~V~iWd~  738 (743)
                      ..|..++...++.|+++
T Consensus       299 k~~s~ag~s~~~~i~~~  315 (325)
T KOG0649|consen  299 KFISIAGFSNKLHILKD  315 (325)
T ss_pred             EEEEecccceeeeeeec
Confidence            35666677777777754

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.45  E-value=1.4e-12  Score=143.18  Aligned_cols=187  Identities=12%  Similarity=0.182  Sum_probs=146.1

Q ss_pred             EEEeeCCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEE
Q 004603          548 FQLIPASTSKVESCHFSPDGKLLATGGHD---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW  624 (743)
Q Consensus       548 ~~~l~~H~~~V~siafspdg~~LaSgs~D---g~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvW  624 (743)
                      ++..-.|...|..+.||..|.+|++...|   ..|.|+.+...+...-|.--.+.|.++.|||...+|++++ -..||||
T Consensus       514 v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiY  592 (733)
T KOG0650|consen  514 VCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIY  592 (733)
T ss_pred             eEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEe-ccceEEE
Confidence            34555688899999999999999998654   5688999887666666655677899999999988888876 6789999


Q ss_pred             ECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCC-eeeEEEecc----CceeeecCCCEEEEEec
Q 004603          625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFKVC----NLMPIILKGCFILNSIF  699 (743)
Q Consensus       625 Dl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg-~~v~~~~~~----~~i~~s~~g~~l~sgs~  699 (743)
                      |+.... .+..+......|.+++.||.|.+++ .++.|+.+..||+.-. +....++.|    +.+++++.-.++++|+.
T Consensus       593 dL~kqe-lvKkL~tg~kwiS~msihp~GDnli-~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sd  670 (733)
T KOG0650|consen  593 DLSKQE-LVKKLLTGSKWISSMSIHPNGDNLI-LGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSD  670 (733)
T ss_pred             ehhHHH-HHHHHhcCCeeeeeeeecCCCCeEE-EecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecC
Confidence            998633 3555555567899999999998777 7888999999999754 555666655    45788888899999999


Q ss_pred             CCeEEEEec-----------------------c--cceEEEEecCCCCEEEEEeCCCeEEEeC
Q 004603          700 NCYLLLHRI-----------------------F--LNLLSVSEWCNPDEISTSSWKDSCCSHR  737 (743)
Q Consensus       700 Dg~I~vh~~-----------------------~--v~~l~v~~~~~~~~laSgs~DG~V~iWd  737 (743)
                      |+++.|...                       .  ..++...+.+..-+|+++|.||+|++|.
T Consensus       671 Dgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlfT  733 (733)
T KOG0650|consen  671 DGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLFT  733 (733)
T ss_pred             CCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEeeC
Confidence            999888211                       1  2345545555467999999999999983

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.44  E-value=2.1e-12  Score=131.30  Aligned_cols=172  Identities=19%  Similarity=0.333  Sum_probs=124.9

Q ss_pred             CCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCe
Q 004603          479 ASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKV  558 (743)
Q Consensus       479 s~~~s~~~fs~dg~~~l~~~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V  558 (743)
                      ..+.+.++|.|+..+.          ...+|++.+  ..+++|....++ .......+...         ..-..+..++
T Consensus        96 ~YP~tK~~wiPd~~g~----------~pdlLATs~--D~LRlWri~~ee-~~~~~~~~L~~---------~kns~~~aPl  153 (364)
T KOG0290|consen   96 PYPVTKLMWIPDSKGV----------YPDLLATSS--DFLRLWRIGDEE-SRVELQSVLNN---------NKNSEFCAPL  153 (364)
T ss_pred             CCCccceEecCCcccc----------Ccchhhccc--CeEEEEeccCcC-Cceehhhhhcc---------CcccccCCcc
Confidence            3455566677665421          124566543  578999665431 11111111100         1123466789


Q ss_pred             EEEEEcC-CCCEEEEEeCCCcEEEEECCCCe---EEEEEcccCCCEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCe--
Q 004603          559 ESCHFSP-DGKLLATGGHDKKAVLWCTESFT---VKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDY--  631 (743)
Q Consensus       559 ~siafsp-dg~~LaSgs~Dg~V~IWd~~t~~---~i~~l~~H~~~V~~vafsp~-~~~LaSgs~Dg~VrvWDl~~~~~--  631 (743)
                      +++.|+. +-++|.+++-|-++.|||++++.   ....+..|...|++|+|... -..||+++.||.||+||+|....  
T Consensus       154 TSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHST  233 (364)
T KOG0290|consen  154 TSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHST  233 (364)
T ss_pred             cccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccce
Confidence            9999997 88899999999999999999853   35667899999999999885 45789999999999999974221  


Q ss_pred             ---------------------------------------------eEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEE
Q 004603          632 ---------------------------------------------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR  666 (743)
Q Consensus       632 ---------------------------------------------~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~Ir  666 (743)
                                                                   ++..+.+|.+.|++|+|.|.....+++|+.|..+.
T Consensus       234 IIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qal  313 (364)
T KOG0290|consen  234 IIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQAL  313 (364)
T ss_pred             EEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEE
Confidence                                                         24566789999999999999888999999999999


Q ss_pred             EEECCC
Q 004603          667 YWSINN  672 (743)
Q Consensus       667 vWDl~t  672 (743)
                      +||+..
T Consensus       314 iWDl~q  319 (364)
T KOG0290|consen  314 IWDLQQ  319 (364)
T ss_pred             EEeccc
Confidence            999875

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.43  E-value=7e-13  Score=145.01  Aligned_cols=130  Identities=21%  Similarity=0.341  Sum_probs=111.3

Q ss_pred             eeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC--------CCeEEEEEcccCCCEEEEEEcCCCCEEEEEe
Q 004603          545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE--------SFTVKSTLEEHTQWITDVRFSPSLSRLATSS  616 (743)
Q Consensus       545 ~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~--------t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs  616 (743)
                      +....++..|.+.|+.++|++....|++|+.|+++++|++.        ..+++.+|++|.++|.|+++.+++..+++|+
T Consensus       284 w~ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg  363 (577)
T KOG0642|consen  284 WNIKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGG  363 (577)
T ss_pred             cceeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeec
Confidence            45555888999999999999999999999999999999982        2467889999999999999999999999999


Q ss_pred             CCCeEEEEECCC---------CCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCee
Q 004603          617 ADRTVRVWDTEN---------PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC  675 (743)
Q Consensus       617 ~Dg~VrvWDl~~---------~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~  675 (743)
                      .||+|++|++-.         ......++.||++.|+.+++++.... |++|+.||+||.|+......
T Consensus       364 ~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~-Llscs~DgTvr~w~~~~~~~  430 (577)
T KOG0642|consen  364 IDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDR-LLSCSSDGTVRLWEPTEESP  430 (577)
T ss_pred             cCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccc-eeeecCCceEEeeccCCcCc
Confidence            999999995431         12334578899999999999998654 66999999999999876554

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.42  E-value=1.5e-11  Score=132.90  Aligned_cols=211  Identities=16%  Similarity=0.187  Sum_probs=152.7

Q ss_pred             cCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 004603          503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW  582 (743)
Q Consensus       503 ~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IW  582 (743)
                      ++.++.+++++.|+.+++|..                 ....+..+     -.+++.|+.|+|.| .||.|...|...|.
T Consensus       377 hps~~q~~T~gqdk~v~lW~~-----------------~k~~wt~~-----~~d~~~~~~fhpsg-~va~Gt~~G~w~V~  433 (626)
T KOG2106|consen  377 HPSKNQLLTCGQDKHVRLWND-----------------HKLEWTKI-----IEDPAECADFHPSG-VVAVGTATGRWFVL  433 (626)
T ss_pred             CCChhheeeccCcceEEEccC-----------------CceeEEEE-----ecCceeEeeccCcc-eEEEeeccceEEEE
Confidence            445678899999999999941                 11111111     23568899999999 99999999999999


Q ss_pred             ECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEE-EecCCCCeEEEEEecCCCcEEEEEeC
Q 004603          583 CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDN  661 (743)
Q Consensus       583 d~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~-l~~h~~~V~sl~fsp~g~~lL~Sgs~  661 (743)
                      |+++...+..-.. ...+++|+|+|+|.+||.|+.|+.|++|.+......... -+.|.++|+.|+|++|+. +|.+-+.
T Consensus       434 d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~-~~~~~S~  511 (626)
T KOG2106|consen  434 DTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQ-FLVSNSG  511 (626)
T ss_pred             ecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCc-eEEeccC
Confidence            9998555544333 889999999999999999999999999999776543333 233448999999999976 6669999


Q ss_pred             CCcEEEEECCCCee---eEEEe--------------cc-----CceeeecCCCEEEEEecCCeEEEEecc----------
Q 004603          662 NSEIRYWSINNGSC---AGVFK--------------VC-----NLMPIILKGCFILNSIFNCYLLLHRIF----------  709 (743)
Q Consensus       662 Dg~IrvWDl~tg~~---v~~~~--------------~~-----~~i~~s~~g~~l~sgs~Dg~I~vh~~~----------  709 (743)
                      |-.|-+|....-+.   ++.++              +.     ..++.+.++..+++|.+.|+|++...+          
T Consensus       512 d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he  591 (626)
T KOG2106|consen  512 DYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHE  591 (626)
T ss_pred             ceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCccccee
Confidence            99999994332111   11111              00     124455678899999999999993322          


Q ss_pred             -----cceEEEEecCCCCEEEEEeCCCeEEEeCC
Q 004603          710 -----LNLLSVSEWCNPDEISTSSWKDSCCSHRE  738 (743)
Q Consensus       710 -----v~~l~v~~~~~~~~laSgs~DG~V~iWd~  738 (743)
                           .....+.+.++...+.+.+.|..|+.|+-
T Consensus       592 ~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~l  625 (626)
T KOG2106|consen  592 YGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWRL  625 (626)
T ss_pred             eccccceeEEEEEeeCCceEEecCCCceEEEEEe
Confidence                 12344455555677888889999999973

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.42  E-value=2.4e-12  Score=139.85  Aligned_cols=154  Identities=19%  Similarity=0.178  Sum_probs=114.8

Q ss_pred             CCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCc----------c-ccccccCCCceeeeE
Q 004603          480 SSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDR----------V-GRSAEVGKGFTFTEF  548 (743)
Q Consensus       480 ~~~s~~~fs~dg~~~l~~~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~----------~-~~~~~~~~~~~~~~~  548 (743)
                      ..++++.|-|...              ..+...-+++++.+++..........          + +..+....  .-.++
T Consensus       220 tsvT~ikWvpg~~--------------~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~--~rNPv  283 (636)
T KOG2394|consen  220 SSVTCIKWVPGSD--------------SLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKK--TRNPV  283 (636)
T ss_pred             cceEEEEEEeCCC--------------ceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccc--cCCcc
Confidence            5777888887554              45556667788888844221111100          0 01111111  11334


Q ss_pred             EEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004603          549 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN  628 (743)
Q Consensus       549 ~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~  628 (743)
                      ....--.+.|..++|+|||++||+.+.||.+||||.++.+.+..++..-+...||+|+|||++|++|+.|..|.||.+..
T Consensus       284 ~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~e  363 (636)
T KOG2394|consen  284 ARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEE  363 (636)
T ss_pred             ceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEecc
Confidence            44444456899999999999999999999999999999888877777778899999999999999999999999999987


Q ss_pred             CCeeEEEEecCCCCeEEEEEec
Q 004603          629 PDYSLRTFTGHSTTVMSLDFHP  650 (743)
Q Consensus       629 ~~~~l~~l~~h~~~V~sl~fsp  650 (743)
                      .+. +..-.+|.++|..|+|+|
T Consensus       364 rRV-VARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  364 RRV-VARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             ceE-EEeccccccceeeEeecc
Confidence            554 777889999999999997

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.42  E-value=2.7e-12  Score=139.20  Aligned_cols=202  Identities=15%  Similarity=0.151  Sum_probs=145.2

Q ss_pred             CEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004603          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES  586 (743)
Q Consensus       507 ~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t  586 (743)
                      ..++.++.||.+.+..-                    ..+..+.+.+|.+.|.|-.|+|||.-|+|+++||.|++|. ++
T Consensus        76 d~~~i~s~DGkf~il~k--------------------~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rs  134 (737)
T KOG1524|consen   76 DTLLICSNDGRFVILNK--------------------SARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RS  134 (737)
T ss_pred             ceEEEEcCCceEEEecc--------------------cchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-cc
Confidence            44556667888877711                    1123355678999999999999999999999999999998 45


Q ss_pred             CeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEE
Q 004603          587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR  666 (743)
Q Consensus       587 ~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~Ir  666 (743)
                      |-...++......|+|++|.|+...++-|- .+.+.+=-+..... +-..+.|.+-|.+++|++... ++++|++|...+
T Consensus       135 GMLRStl~Q~~~~v~c~~W~p~S~~vl~c~-g~h~~IKpL~~n~k-~i~WkAHDGiiL~~~W~~~s~-lI~sgGED~kfK  211 (737)
T KOG1524|consen  135 GMLRSTVVQNEESIRCARWAPNSNSIVFCQ-GGHISIKPLAANSK-IIRWRAHDGLVLSLSWSTQSN-IIASGGEDFRFK  211 (737)
T ss_pred             chHHHHHhhcCceeEEEEECCCCCceEEec-CCeEEEeecccccc-eeEEeccCcEEEEeecCcccc-ceeecCCceeEE
Confidence            555556666778899999999866554443 34455545554343 556788999999999999865 888999999999


Q ss_pred             EEECCCCeeeEEEecc----CceeeecCCCEEEEEecCCeEEEEecc-cceEEEEecCCCCEEEEEeCCCeEEE
Q 004603          667 YWSINNGSCAGVFKVC----NLMPIILKGCFILNSIFNCYLLLHRIF-LNLLSVSEWCNPDEISTSSWKDSCCS  735 (743)
Q Consensus       667 vWDl~tg~~v~~~~~~----~~i~~s~~g~~l~sgs~Dg~I~vh~~~-v~~l~v~~~~~~~~laSgs~DG~V~i  735 (743)
                      |||-- |..+.....|    ++++|.|+ ..++.|+.+ ++++.... ...+.+++..++..+++|...|.|.+
T Consensus       212 vWD~~-G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~n-t~R~~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~  282 (737)
T KOG1524|consen  212 IWDAQ-GANLFTSAAEEYAITSVAFNPE-KDYLLWSYN-TARFSSPRVGSIFNLSWSADGTQATCGTSTGQLIV  282 (737)
T ss_pred             eeccc-CcccccCChhccceeeeeeccc-cceeeeeee-eeeecCCCccceEEEEEcCCCceeeccccCceEEE
Confidence            99976 4444443333    56888899 555556554 55553332 23445555555889999999998765

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.41  E-value=2.4e-13  Score=153.44  Aligned_cols=178  Identities=24%  Similarity=0.322  Sum_probs=144.2

Q ss_pred             CCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004603          505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT  584 (743)
Q Consensus       505 ~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~  584 (743)
                      ..++|.+|+.|..|++|...+                   ..+....+||.+.|+.++.+.+..++++++.|+.|++|.+
T Consensus       201 tg~~Iitgsdd~lvKiwS~et-------------------~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl  261 (1113)
T KOG0644|consen  201 TGRYIITGSDDRLVKIWSMET-------------------ARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRL  261 (1113)
T ss_pred             ccceEeecCccceeeeeeccc-------------------hhhhccCCCCccccchhccchhhhhhhhcccCceEEEEec
Confidence            348999999999999995433                   3566778999999999999999999999999999999999


Q ss_pred             CCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCC-------------------------------e-
Q 004603          585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE-NPD-------------------------------Y-  631 (743)
Q Consensus       585 ~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~-~~~-------------------------------~-  631 (743)
                      ..+.++.++.+|++.|++++|+|-.    +.+.||++++||.+ ...                               . 
T Consensus       262 ~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d  337 (1113)
T KOG0644|consen  262 PDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRD  337 (1113)
T ss_pred             CCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCC
Confidence            9999999999999999999999953    77889999999986 000                               0 


Q ss_pred             ----------------------------------------e---------EEEEecCCCCeEEEEEecCCCcEEEEEeCC
Q 004603          632 ----------------------------------------S---------LRTFTGHSTTVMSLDFHPSKEDLLCSCDNN  662 (743)
Q Consensus       632 ----------------------------------------~---------l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~D  662 (743)
                                                              |         ++.+.+|...++.+.+||-...+..+++.|
T Consensus       338 ~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~d  417 (1113)
T KOG0644|consen  338 GEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYD  417 (1113)
T ss_pred             cccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCC
Confidence                                                    0         112236778899999999988888899999


Q ss_pred             CcEEEEECCCCeeeEEEec-cCc---eeeecCCCEEEEEecCCeEEE
Q 004603          663 SEIRYWSINNGSCAGVFKV-CNL---MPIILKGCFILNSIFNCYLLL  705 (743)
Q Consensus       663 g~IrvWDl~tg~~v~~~~~-~~~---i~~s~~g~~l~sgs~Dg~I~v  705 (743)
                      |.+.|||+-.|..++.+.. |..   ..|+.+|..++....-|.+.|
T Consensus       418 gst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i  464 (1113)
T KOG0644|consen  418 GSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYI  464 (1113)
T ss_pred             CceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCceEE
Confidence            9999999999987776653 221   347788877776666666555

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.41  E-value=7.3e-12  Score=144.68  Aligned_cols=224  Identities=12%  Similarity=0.094  Sum_probs=157.1

Q ss_pred             CCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004603          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE  585 (743)
Q Consensus       506 ~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~  585 (743)
                      ..++.+|+.||.|++|..........+.+..|....+.       +.+..+.=.-++|-....+|+++|+-+.|+|||++
T Consensus      1123 ~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~-------~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~ 1195 (1387)
T KOG1517|consen 1123 DALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQ-------LPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAH 1195 (1387)
T ss_pred             hhheeeeccCceEEEecccccccCCceeEEeecccccc-------CccCCCCCeeeehhhhCCeEEecCCeeEEEEEecc
Confidence            46889999999999995554433333333333322211       11112222446777655556666668899999998


Q ss_pred             CCeEEEEEc-ccCCCEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCC--eeEEEEecCCCC--eEEEEEecCCCcEEEEE
Q 004603          586 SFTVKSTLE-EHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPD--YSLRTFTGHSTT--VMSLDFHPSKEDLLCSC  659 (743)
Q Consensus       586 t~~~i~~l~-~H~~~V~~vafsp-~~~~LaSgs~Dg~VrvWDl~~~~--~~l~~l~~h~~~--V~sl~fsp~g~~lL~Sg  659 (743)
                      ...++..+. +-..-|+++.-+- .|+.|+.|..||.||+||.|...  ..+..++.|...  |..+.+.+.|-.-|++|
T Consensus      1196 ~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSg 1275 (1387)
T KOG1517|consen 1196 KEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSG 1275 (1387)
T ss_pred             cceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeee
Confidence            877666553 3344566654433 47899999999999999988643  357888899988  99999999877668899


Q ss_pred             eCCCcEEEEECCCCeeeE---EEe----c--cCceeeecCCCEEEEEecCCeEEEEeccc--------------------
Q 004603          660 DNNSEIRYWSINNGSCAG---VFK----V--CNLMPIILKGCFILNSIFNCYLLLHRIFL--------------------  710 (743)
Q Consensus       660 s~Dg~IrvWDl~tg~~v~---~~~----~--~~~i~~s~~g~~l~sgs~Dg~I~vh~~~v--------------------  710 (743)
                      +.||.|++||+|......   ...    |  ++++.++.....+++|+. +.|+||+...                    
T Consensus      1276 s~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~ 1354 (1387)
T KOG1517|consen 1276 SQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSV 1354 (1387)
T ss_pred             ccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccCcccccCcCCCc
Confidence            999999999999742111   111    2  567889999999999998 8999987543                    


Q ss_pred             ceEEEEecCCCCEEEEEeCCCeEEEeCCC
Q 004603          711 NLLSVSEWCNPDEISTSSWKDSCCSHREL  739 (743)
Q Consensus       711 ~~l~v~~~~~~~~laSgs~DG~V~iWd~~  739 (743)
                      .++.+.+.  .-.+++|+.|.+|.||...
T Consensus      1355 scL~FHP~--~~llAaG~~Ds~V~iYs~~ 1381 (1387)
T KOG1517|consen 1355 SCLAFHPH--RLLLAAGSADSTVSIYSCE 1381 (1387)
T ss_pred             ceeeecch--hHhhhhccCCceEEEeecC
Confidence            23344433  5689999999999999653

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.40  E-value=2.9e-12  Score=135.42  Aligned_cols=148  Identities=22%  Similarity=0.332  Sum_probs=123.0

Q ss_pred             CCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCC---------eEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 004603          556 SKVESCHFSPDGK-LLATGGHDKKAVLWCTESF---------TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD  625 (743)
Q Consensus       556 ~~V~siafspdg~-~LaSgs~Dg~V~IWd~~t~---------~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWD  625 (743)
                      .+|.++.|.+... +|+||+.|..|+||-+...         +....+..|...|++|+|+|+|.+|+||+.+|.|.+|-
T Consensus        14 ~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk   93 (434)
T KOG1009|consen   14 EPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWK   93 (434)
T ss_pred             CceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEE
Confidence            5699999998655 9999999999999987532         23456788999999999999999999999999999997


Q ss_pred             CC--------C-----C--CeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEeccCc----ee
Q 004603          626 TE--------N-----P--DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNL----MP  686 (743)
Q Consensus       626 l~--------~-----~--~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~~~----i~  686 (743)
                      ..        +     .  ....+.+.+|...|+.++|+|++. ++++++.|..+++||++.|.....+..|..    ++
T Consensus        94 ~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~-~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgva  172 (434)
T KOG1009|consen   94 QGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSN-FLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVA  172 (434)
T ss_pred             ecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCc-eeeeeeccceEEEEEeccceeEeeccccccccceee
Confidence            65        2     1  122456778999999999999976 677999999999999999999988887744    67


Q ss_pred             eecCCCEEEEEecCCeEE
Q 004603          687 IILKGCFILNSIFNCYLL  704 (743)
Q Consensus       687 ~s~~g~~l~sgs~Dg~I~  704 (743)
                      +.|-.+|+++-+.|...+
T Consensus       173 wDpl~qyv~s~s~dr~~~  190 (434)
T KOG1009|consen  173 WDPLNQYVASKSSDRHPE  190 (434)
T ss_pred             cchhhhhhhhhccCcccc
Confidence            888888888888777433

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.39  E-value=1.4e-11  Score=126.99  Aligned_cols=198  Identities=17%  Similarity=0.189  Sum_probs=151.6

Q ss_pred             CCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeE
Q 004603          480 SSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVE  559 (743)
Q Consensus       480 ~~~s~~~fs~dg~~~l~~~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~  559 (743)
                      .++.+..|+.|..               .++.+.....|.+|....                ...++..+++..|...|+
T Consensus        11 ~pitchAwn~drt---------------~iAv~~~~~evhiy~~~~----------------~~~w~~~htls~Hd~~vt   59 (361)
T KOG1523|consen   11 EPITCHAWNSDRT---------------QIAVSPNNHEVHIYSMLG----------------ADLWEPAHTLSEHDKIVT   59 (361)
T ss_pred             CceeeeeecCCCc---------------eEEeccCCceEEEEEecC----------------CCCceeceehhhhCccee
Confidence            3667777887774               567777777788883321                223678899999999999


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECC-C--CeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe---eE
Q 004603          560 SCHFSPDGKLLATGGHDKKAVLWCTE-S--FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY---SL  633 (743)
Q Consensus       560 siafspdg~~LaSgs~Dg~V~IWd~~-t--~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~---~l  633 (743)
                      +|+|+|..+.|++|+.|+..+||... .  .++...+..|...++||.|+|.++.|++|+....|.||-++....   +.
T Consensus        60 gvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsK  139 (361)
T KOG1523|consen   60 GVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSK  139 (361)
T ss_pred             EEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhh
Confidence            99999999999999999999999883 3  345556667889999999999999999999999999998764321   12


Q ss_pred             EEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECC-----C-------------CeeeEEEe----ccCceeeecCC
Q 004603          634 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-----N-------------GSCAGVFK----VCNLMPIILKG  691 (743)
Q Consensus       634 ~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~-----t-------------g~~v~~~~----~~~~i~~s~~g  691 (743)
                      +.-+.+.+.|.+++|||++ -+|++|+.|+.+|||..-     .             |..+..+.    ....+.|++.|
T Consensus       140 hikkPirStv~sldWhpnn-VLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG  218 (361)
T KOG1523|consen  140 HIKKPIRSTVTSLDWHPNN-VLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSG  218 (361)
T ss_pred             hhCCccccceeeeeccCCc-ceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCC
Confidence            2344677899999999985 488899999999999642     1             11122221    12457899999


Q ss_pred             CEEEEEecCCeEEEEecc
Q 004603          692 CFILNSIFNCYLLLHRIF  709 (743)
Q Consensus       692 ~~l~sgs~Dg~I~vh~~~  709 (743)
                      +.|+-.+.|..+.+-+..
T Consensus       219 ~~lawv~Hds~v~~~da~  236 (361)
T KOG1523|consen  219 NRLAWVGHDSTVSFVDAA  236 (361)
T ss_pred             CEeeEecCCCceEEeecC
Confidence            999999999999985543

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.38  E-value=1.7e-11  Score=131.46  Aligned_cols=187  Identities=14%  Similarity=0.116  Sum_probs=150.6

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC--CeEEEEEcccCCCEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCCe
Q 004603          555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTES--FTVKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRVWDTENPDY  631 (743)
Q Consensus       555 ~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t--~~~i~~l~~H~~~V~~vafsp~~~-~LaSgs~Dg~VrvWDl~~~~~  631 (743)
                      .+.|+||.|+|...+|++|+.|++++||-++.  ...+..+.--..+|.+.+|.|+|. .+++++....++.||+.+.+.
T Consensus       213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~  292 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV  292 (514)
T ss_pred             cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence            46799999999999999999999999998864  334555555678899999999998 899999999999999987653


Q ss_pred             -eEEEEecCC-CCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEecc---CceeeecCCCEEEEEecCCeEEEE
Q 004603          632 -SLRTFTGHS-TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVC---NLMPIILKGCFILNSIFNCYLLLH  706 (743)
Q Consensus       632 -~l~~l~~h~-~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~---~~i~~s~~g~~l~sgs~Dg~I~vh  706 (743)
                       .+....++. ..+.....++++. +|+..+..|.|.+....+++.+.+++..   ..++|+.++..|++.+.+|.|.+|
T Consensus       293 ~k~~~~~g~e~~~~e~FeVShd~~-fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~  371 (514)
T KOG2055|consen  293 TKLKPPYGVEEKSMERFEVSHDSN-FIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVW  371 (514)
T ss_pred             ccccCCCCcccchhheeEecCCCC-eEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEE
Confidence             122333444 3567788899987 6667888999999999999999888753   557899999999999999999998


Q ss_pred             eccc-------------ceEEEEecCCCCEEEEEeCCCeEEEeCCCccc
Q 004603          707 RIFL-------------NLLSVSEWCNPDEISTSSWKDSCCSHRELYLY  742 (743)
Q Consensus       707 ~~~v-------------~~l~v~~~~~~~~laSgs~DG~V~iWd~~~~~  742 (743)
                      +..-             ....++...++.++|+|+..|.|-|||...++
T Consensus       372 nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~  420 (514)
T KOG2055|consen  372 NLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCF  420 (514)
T ss_pred             ecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhh
Confidence            7543             33444544557899999999999999966554

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.36  E-value=1.8e-11  Score=139.55  Aligned_cols=209  Identities=16%  Similarity=0.181  Sum_probs=150.0

Q ss_pred             cccCCCCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeC
Q 004603          474 LQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPA  553 (743)
Q Consensus       474 l~~~~s~~~s~~~fs~dg~~~l~~~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  553 (743)
                      +.+.....+.++.|+|...              .+++.|+.+|.|.+|+.....+..             ....-.....
T Consensus       237 ~~~~~~s~v~~~~f~p~~p--------------~ll~gG~y~GqV~lWD~~~~~~~~-------------~s~ls~~~~s  289 (555)
T KOG1587|consen  237 LVLESPSEVTCLKFCPFDP--------------NLLAGGCYNGQVVLWDLRKGSDTP-------------PSGLSALEVS  289 (555)
T ss_pred             EEEecCCceeEEEeccCCc--------------ceEEeeccCceEEEEEccCCCCCC-------------Cccccccccc
Confidence            3344455666666666443              789999999999999776553211             1111222346


Q ss_pred             CCCCeEEEEEcCCC--CEEEEEeCCCcEEEEECCCCe-------------------------------------------
Q 004603          554 STSKVESCHFSPDG--KLLATGGHDKKAVLWCTESFT-------------------------------------------  588 (743)
Q Consensus       554 H~~~V~siafspdg--~~LaSgs~Dg~V~IWd~~t~~-------------------------------------------  588 (743)
                      |..+|+.+.|-.+.  .-|++++.||.|+.|+++...                                           
T Consensus       290 h~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~  369 (555)
T KOG1587|consen  290 HSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEE  369 (555)
T ss_pred             CCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCC
Confidence            88899999996633  458899999999999775210                                           


Q ss_pred             --E------------------EEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEE
Q 004603          589 --V------------------KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDF  648 (743)
Q Consensus       589 --~------------------i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~f  648 (743)
                        .                  ...+..|.+.|+++.++|-+..++..+.|.+|++|.......++..+..+...|++++|
T Consensus       370 G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaW  449 (555)
T KOG1587|consen  370 GKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAW  449 (555)
T ss_pred             cEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEE
Confidence              0                  00112467889999999976655555559999999987445567778888888999999


Q ss_pred             ecCCCcEEEEEeCCCcEEEEECCCCe--eeEEEec----cCceeeecCCCEEEEEecCCeEEEEecc
Q 004603          649 HPSKEDLLCSCDNNSEIRYWSINNGS--CAGVFKV----CNLMPIILKGCFILNSIFNCYLLLHRIF  709 (743)
Q Consensus       649 sp~g~~lL~Sgs~Dg~IrvWDl~tg~--~v~~~~~----~~~i~~s~~g~~l~sgs~Dg~I~vh~~~  709 (743)
                      +|..+-+|+++..||.|.|||+....  ++.+.+.    .+.+.+++.|+.|++|...|++.+++..
T Consensus       450 SptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~  516 (555)
T KOG1587|consen  450 SPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLS  516 (555)
T ss_pred             cCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence            99999999999999999999997543  3333322    2345677889999999999998887664

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.36  E-value=1.3e-11  Score=127.53  Aligned_cols=157  Identities=20%  Similarity=0.325  Sum_probs=128.5

Q ss_pred             eeCCCCCeEEEEEcC-----CCCEEEEEeCCCcEEEEECCCCeEEEEE-----cccCCCEEEEEEcCC----CCEEEEEe
Q 004603          551 IPASTSKVESCHFSP-----DGKLLATGGHDKKAVLWCTESFTVKSTL-----EEHTQWITDVRFSPS----LSRLATSS  616 (743)
Q Consensus       551 l~~H~~~V~siafsp-----dg~~LaSgs~Dg~V~IWd~~t~~~i~~l-----~~H~~~V~~vafsp~----~~~LaSgs  616 (743)
                      .+.|+.+|..++|++     +...+++++. ..|.||.+...--++.+     ..|....+.++|.-+    ..++|.++
T Consensus        34 ~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G  112 (385)
T KOG1034|consen   34 KEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGG  112 (385)
T ss_pred             hccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeec
Confidence            457889999999985     2346677664 46888887643322222     236777888888763    34788899


Q ss_pred             CCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEeccC-------ceeeec
Q 004603          617 ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCN-------LMPIIL  689 (743)
Q Consensus       617 ~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~~-------~i~~s~  689 (743)
                      .-|.|||.|+.++. +...+.+|...|+.|.|+|+...++++||.|..||+|++++..|+..|.+..       ++.|+.
T Consensus       113 ~~GvIrVid~~~~~-~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~  191 (385)
T KOG1034|consen  113 YLGVIRVIDVVSGQ-CSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSL  191 (385)
T ss_pred             ceeEEEEEecchhh-hccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcC
Confidence            99999999999865 4788999999999999999999999999999999999999999999997632       367889


Q ss_pred             CCCEEEEEecCCeEEEEecc
Q 004603          690 KGCFILNSIFNCYLLLHRIF  709 (743)
Q Consensus       690 ~g~~l~sgs~Dg~I~vh~~~  709 (743)
                      +|.+|++++.|..+++|+..
T Consensus       192 ~gd~i~ScGmDhslk~W~l~  211 (385)
T KOG1034|consen  192 DGDRIASCGMDHSLKLWRLN  211 (385)
T ss_pred             CCCeeeccCCcceEEEEecC
Confidence            99999999999999999887

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.35  E-value=4.4e-11  Score=135.21  Aligned_cols=183  Identities=18%  Similarity=0.115  Sum_probs=127.7

Q ss_pred             EEeeCCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEECCCCeE--EEEEcccCCCEEEEEEcCCCCEEEEEe-CCCeEE
Q 004603          549 QLIPASTSKVESCHFSPDGKLLATGGHD---KKAVLWCTESFTV--KSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVR  622 (743)
Q Consensus       549 ~~l~~H~~~V~siafspdg~~LaSgs~D---g~V~IWd~~t~~~--i~~l~~H~~~V~~vafsp~~~~LaSgs-~Dg~Vr  622 (743)
                      ..+..|...|.+.+|+|||+.|+.++.+   ..|++||+.+++.  +..+.+|   ..+++|+||++.|+.++ .+|.+.
T Consensus       197 ~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPDG~~La~~~~~~g~~~  273 (429)
T PRK01742        197 FIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPDGSRLAFASSKDGVLN  273 (429)
T ss_pred             eEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCCCCEEEEEEecCCcEE
Confidence            4456778889999999999999888754   3699999988754  3334443   44789999999887764 688766


Q ss_pred             EE--ECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCC-eeeEEEecc-CceeeecCCCEEEEEe
Q 004603          623 VW--DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFKVC-NLMPIILKGCFILNSI  698 (743)
Q Consensus       623 vW--Dl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg-~~v~~~~~~-~~i~~s~~g~~l~sgs  698 (743)
                      ||  |+.++.  +..+..+...+.+++|+|+|..+++++..++.++||+++.. .....+... ....++|+|.+|+..+
T Consensus       274 Iy~~d~~~~~--~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~~~~~~SpDG~~ia~~~  351 (429)
T PRK01742        274 IYVMGANGGT--PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRGYSAQISADGKTLVMIN  351 (429)
T ss_pred             EEEEECCCCC--eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCCCCCccCCCCCCEEEEEc
Confidence            65  555443  45566677778899999999988877777888888877532 222222211 2356899999998887


Q ss_pred             cCCeEEEEecccc----------eEEEEecCCCCEEEEEeCCCeEEEeC
Q 004603          699 FNCYLLLHRIFLN----------LLSVSEWCNPDEISTSSWKDSCCSHR  737 (743)
Q Consensus       699 ~Dg~I~vh~~~v~----------~l~v~~~~~~~~laSgs~DG~V~iWd  737 (743)
                      .++.+. |+....          .....+.+++..|+.++.+|.+.+|.
T Consensus       352 ~~~i~~-~Dl~~g~~~~lt~~~~~~~~~~sPdG~~i~~~s~~g~~~~l~  399 (429)
T PRK01742        352 GDNVVK-QDLTSGSTEVLSSTFLDESPSISPNGIMIIYSSTQGLGKVLQ  399 (429)
T ss_pred             CCCEEE-EECCCCCeEEecCCCCCCCceECCCCCEEEEEEcCCCceEEE
Confidence            776555 442211          11123344577999999999888774

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.35  E-value=5.3e-10  Score=121.63  Aligned_cols=180  Identities=10%  Similarity=0.128  Sum_probs=122.4

Q ss_pred             CeEEEEEcCCCCEEEEEeC-CCcEEEEECCC-C---eEEEEEcccCCCEEEEEEcCCCCEEEEEe-CCCeEEEEECCCCC
Q 004603          557 KVESCHFSPDGKLLATGGH-DKKAVLWCTES-F---TVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENPD  630 (743)
Q Consensus       557 ~V~siafspdg~~LaSgs~-Dg~V~IWd~~t-~---~~i~~l~~H~~~V~~vafsp~~~~LaSgs-~Dg~VrvWDl~~~~  630 (743)
                      ....++|+|++++|++++. ++.|.+|++++ +   +.+..+. +...+.+++|+|+++++++++ .++.|++||+.+..
T Consensus        81 ~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g  159 (330)
T PRK11028         81 SPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDG  159 (330)
T ss_pred             CceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCC
Confidence            4678999999998888875 78999999964 2   2333333 234467889999998886554 57999999998643


Q ss_pred             eeE----EEEe-cCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCC--C--eeeEEEecc----------CceeeecCC
Q 004603          631 YSL----RTFT-GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN--G--SCAGVFKVC----------NLMPIILKG  691 (743)
Q Consensus       631 ~~l----~~l~-~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~t--g--~~v~~~~~~----------~~i~~s~~g  691 (743)
                      ...    .... .....+..+.|+|++.+++++...+++|.+||+..  +  +.+..+...          ..+.++|+|
T Consensus       160 ~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg  239 (330)
T PRK11028        160 HLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDG  239 (330)
T ss_pred             cccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCC
Confidence            211    0011 12244678999999998877777789999999973  3  333333321          126688999


Q ss_pred             CEEEEEe-cCCeEEEEeccc--------c-------eEEEEecCCCCEEEEEeC-CCeEEEeC
Q 004603          692 CFILNSI-FNCYLLLHRIFL--------N-------LLSVSEWCNPDEISTSSW-KDSCCSHR  737 (743)
Q Consensus       692 ~~l~sgs-~Dg~I~vh~~~v--------~-------~l~v~~~~~~~~laSgs~-DG~V~iWd  737 (743)
                      ++++++. .++.|.+++...        .       ...+....++.+|+++.. +++|.+|+
T Consensus       240 ~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~  302 (330)
T PRK11028        240 RHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYE  302 (330)
T ss_pred             CEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEE
Confidence            9999985 467888875411        0       012333445777777665 89999995

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.32  E-value=9.8e-12  Score=132.35  Aligned_cols=174  Identities=24%  Similarity=0.262  Sum_probs=127.4

Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEe-
Q 004603          559 ESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT-  637 (743)
Q Consensus       559 ~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~-  637 (743)
                      .+++|+.+|..|++|+.||++|||+..+...+..+..|.+.|.++.|+||+++|++-+.| ..+|||++++.. +.... 
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~-~a~~t~  225 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAA-LARKTP  225 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCch-hhhcCC
Confidence            689999999999999999999999988888888888999999999999999999999999 999999998743 44333 


Q ss_pred             -cCCCCeEEEEEecCC--CcE--EEEEeCCCcEEEEECCC---------CeeeEEEeccCceeeecCCCEEEEEecCCeE
Q 004603          638 -GHSTTVMSLDFHPSK--EDL--LCSCDNNSEIRYWSINN---------GSCAGVFKVCNLMPIILKGCFILNSIFNCYL  703 (743)
Q Consensus       638 -~h~~~V~sl~fsp~g--~~l--L~Sgs~Dg~IrvWDl~t---------g~~v~~~~~~~~i~~s~~g~~l~sgs~Dg~I  703 (743)
                       ........+.|.-++  +.+  ++.-..-+.|+.||+..         .+.+..++..+++.++.+|+|++.|+.||.|
T Consensus       226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsV  305 (398)
T KOG0771|consen  226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSV  305 (398)
T ss_pred             cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcE
Confidence             122334556666554  222  22333445677766542         2233444556778899999999999999998


Q ss_pred             EE---------------EecccceEEEEecCCCCEEEEEeCCCeEEEe
Q 004603          704 LL---------------HRIFLNLLSVSEWCNPDEISTSSWKDSCCSH  736 (743)
Q Consensus       704 ~v---------------h~~~v~~l~v~~~~~~~~laSgs~DG~V~iW  736 (743)
                      .+               |...++.+.++++  ..++++.+.|....+.
T Consensus       306 ai~~~~~lq~~~~vk~aH~~~VT~ltF~Pd--sr~~~svSs~~~~~v~  351 (398)
T KOG0771|consen  306 AIYDAKSLQRLQYVKEAHLGFVTGLTFSPD--SRYLASVSSDNEAAVT  351 (398)
T ss_pred             EEEEeceeeeeEeehhhheeeeeeEEEcCC--cCcccccccCCceeEE
Confidence            88               5555566666654  5566666666655543

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.31  E-value=1.8e-10  Score=116.02  Aligned_cols=119  Identities=18%  Similarity=0.291  Sum_probs=91.8

Q ss_pred             CCCeEEEEEcCCCCEEEEE--eCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCC---CeEEEEECCCC
Q 004603          555 TSKVESCHFSPDGKLLATG--GHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD---RTVRVWDTENP  629 (743)
Q Consensus       555 ~~~V~siafspdg~~LaSg--s~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~D---g~VrvWDl~~~  629 (743)
                      .++|.+++|+|+|+.||+.  ..++.|.+||++ ++.+..+.  ...+..|.|+|+|++|++++.+   |.|.+||+++.
T Consensus        59 ~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~  135 (194)
T PF08662_consen   59 EGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKK  135 (194)
T ss_pred             CCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence            4569999999999986554  457899999997 66666664  5678899999999999998754   67999999964


Q ss_pred             CeeEEEEecCCCCeEEEEEecCCCcEEEEEeC-----CCcEEEEECCCCeeeEEEe
Q 004603          630 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN-----NSEIRYWSINNGSCAGVFK  680 (743)
Q Consensus       630 ~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~-----Dg~IrvWDl~tg~~v~~~~  680 (743)
                      .. +.++. | ..++.++|+|+|++++++.+.     |..++||+.. |+.+....
T Consensus       136 ~~-i~~~~-~-~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~~  187 (194)
T PF08662_consen  136 KK-ISTFE-H-SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKKP  187 (194)
T ss_pred             EE-eeccc-c-CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec-CeEeEecc
Confidence            43 55544 3 347899999999987766553     8889999985 66655443

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.31  E-value=1.4e-11  Score=133.91  Aligned_cols=162  Identities=19%  Similarity=0.292  Sum_probs=129.7

Q ss_pred             cCCCCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEe-eCC
Q 004603          476 HNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLI-PAS  554 (743)
Q Consensus       476 ~~~s~~~s~~~fs~dg~~~l~~~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~H  554 (743)
                      ..+..-+.++.|+.+|               .+|++||.|-.+-+|+.                   +..+.++.+ .+|
T Consensus        47 ~GH~GCVN~LeWn~dG---------------~lL~SGSDD~r~ivWd~-------------------~~~KllhsI~TgH   92 (758)
T KOG1310|consen   47 TGHTGCVNCLEWNADG---------------ELLASGSDDTRLIVWDP-------------------FEYKLLHSISTGH   92 (758)
T ss_pred             ccccceecceeecCCC---------------CEEeecCCcceEEeecc-------------------hhcceeeeeeccc
Confidence            3455567788898888               69999999999999933                   333444444 589


Q ss_pred             CCCeEEEEEcC--CCCEEEEEeCCCcEEEEECCC----------CeEEEEEcccCCCEEEEEEcCCC-CEEEEEeCCCeE
Q 004603          555 TSKVESCHFSP--DGKLLATGGHDKKAVLWCTES----------FTVKSTLEEHTQWITDVRFSPSL-SRLATSSADRTV  621 (743)
Q Consensus       555 ~~~V~siafsp--dg~~LaSgs~Dg~V~IWd~~t----------~~~i~~l~~H~~~V~~vafsp~~-~~LaSgs~Dg~V  621 (743)
                      +.-|.|+.|-|  ..++|++|..|+.|+|+|+..          .+..+.+..|+..|..|+-.|++ +.|.+++.||+|
T Consensus        93 taNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGti  172 (758)
T KOG1310|consen   93 TANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTI  172 (758)
T ss_pred             ccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcce
Confidence            99999999999  567899999999999999984          23445567799999999999986 788999999999


Q ss_pred             EEEECCCCCeeEEEEe---------cCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECC
Q 004603          622 RVWDTENPDYSLRTFT---------GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN  671 (743)
Q Consensus       622 rvWDl~~~~~~l~~l~---------~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~  671 (743)
                      |-+|++.+..|-....         ...-...+++.+|..+++|+.|+.|-.+|+||.+
T Consensus       173 rQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~R  231 (758)
T KOG1310|consen  173 RQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRR  231 (758)
T ss_pred             eeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence            9999998654432221         1223467899999999999999999999999965

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.31  E-value=8.1e-11  Score=123.55  Aligned_cols=155  Identities=14%  Similarity=0.140  Sum_probs=123.7

Q ss_pred             CCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEee-CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004603          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP-ASTSKVESCHFSPDGKLLATGGHDKKAVLWCT  584 (743)
Q Consensus       506 ~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~  584 (743)
                      ++||++|+.|..+++|.....-             ...+.+++.... .|..-|.|++|....++|++|+.+++|.+.|+
T Consensus        68 ~~~L~SGGDD~~~~~W~~de~~-------------~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDi  134 (609)
T KOG4227|consen   68 DRFLASGGDDMHGRVWNVDELM-------------VRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDI  134 (609)
T ss_pred             CeEEeecCCcceeeeechHHHH-------------hhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeec
Confidence            5899999999999999443221             111224444443 35588999999999999999999999999999


Q ss_pred             CCCeEEEEEcc--cCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCee--EEEEecCCCCeEEEEEecCCCcEEEEEe
Q 004603          585 ESFTVKSTLEE--HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS--LRTFTGHSTTVMSLDFHPSKEDLLCSCD  660 (743)
Q Consensus       585 ~t~~~i~~l~~--H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~--l~~l~~h~~~V~sl~fsp~g~~lL~Sgs  660 (743)
                      ++.+.+.++..  ..+.|+.+..+|..+.|++.+.++.|.+||++....+  +..+.......+++.|+|..+.+|++.+
T Consensus       135 Et~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~  214 (609)
T KOG4227|consen  135 ETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNS  214 (609)
T ss_pred             ccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEecc
Confidence            99888877753  2458999999999899999999999999999875422  2233334566789999999999999999


Q ss_pred             CCCcEEEEECCCC
Q 004603          661 NNSEIRYWSINNG  673 (743)
Q Consensus       661 ~Dg~IrvWDl~tg  673 (743)
                      ..+.+-|||++..
T Consensus       215 ~~~G~~~~D~R~~  227 (609)
T KOG4227|consen  215 ETGGPNVFDRRMQ  227 (609)
T ss_pred             ccCCCCceeeccc
Confidence            9999999999864

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.31  E-value=2.1e-11  Score=129.80  Aligned_cols=190  Identities=17%  Similarity=0.206  Sum_probs=141.6

Q ss_pred             eEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEE
Q 004603          483 SLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCH  562 (743)
Q Consensus       483 s~~~fs~dg~~~l~~~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~sia  562 (743)
                      .++.|+.++               ..+++|+.|+++++|.++..                   ..+..+..|.+.|.+++
T Consensus       148 k~vaf~~~g---------------s~latgg~dg~lRv~~~Ps~-------------------~t~l~e~~~~~eV~DL~  193 (398)
T KOG0771|consen  148 KVVAFNGDG---------------SKLATGGTDGTLRVWEWPSM-------------------LTILEEIAHHAEVKDLD  193 (398)
T ss_pred             eEEEEcCCC---------------CEeeeccccceEEEEecCcc-------------------hhhhhhHhhcCccccce
Confidence            566777766               68999999999999965443                   33445567888999999


Q ss_pred             EcCCCCEEEEEeCCCcEEEEECCCCeEEEEEc--ccCCCEEEEEEcCCC---C--EEEEEeCCCeEEEEECCCCCe----
Q 004603          563 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLE--EHTQWITDVRFSPSL---S--RLATSSADRTVRVWDTENPDY----  631 (743)
Q Consensus       563 fspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~--~H~~~V~~vafsp~~---~--~LaSgs~Dg~VrvWDl~~~~~----  631 (743)
                      |+|||++|++-+.| ..+||+++++.++....  +-...+..++|.-++   .  .++....-+.|+.||+..-+.    
T Consensus       194 FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l  272 (398)
T KOG0771|consen  194 FSPDGKFLASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFL  272 (398)
T ss_pred             eCCCCcEEEEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeecccccc
Confidence            99999999999999 89999999987766554  223446678887765   2  333444567788877643222    


Q ss_pred             eEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEec-----cCceeeecCCCEEEEEecCCeEEEE
Q 004603          632 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKV-----CNLMPIILKGCFILNSIFNCYLLLH  706 (743)
Q Consensus       632 ~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~-----~~~i~~s~~g~~l~sgs~Dg~I~vh  706 (743)
                      ..+....-...|.+++.+++|+ +++.|+.||.|-|++..+-+++..++.     .+.+.|+|+.+++++-+.|....+.
T Consensus       273 ~~~~~~~~~~siSsl~VS~dGk-f~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~  351 (398)
T KOG0771|consen  273 RLRKKIKRFKSISSLAVSDDGK-FLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVT  351 (398)
T ss_pred             chhhhhhccCcceeEEEcCCCc-EEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEE
Confidence            1222222334699999999987 788899999999999999888877663     2568899999999998888766664


Q ss_pred             ec
Q 004603          707 RI  708 (743)
Q Consensus       707 ~~  708 (743)
                      ..
T Consensus       352 ~l  353 (398)
T KOG0771|consen  352 KL  353 (398)
T ss_pred             EE
Confidence            33

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.30  E-value=5.8e-10  Score=121.37  Aligned_cols=210  Identities=10%  Similarity=0.056  Sum_probs=141.3

Q ss_pred             EEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCC-
Q 004603          509 VDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGG-HDKKAVLWCTES-  586 (743)
Q Consensus       509 l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs-~Dg~V~IWd~~t-  586 (743)
                      .++...|+.|.+|+....                .+.+.+..+.. .+.+..++++|++++|++++ .++.|.+|+++. 
T Consensus         5 y~~~~~~~~I~~~~~~~~----------------g~l~~~~~~~~-~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~   67 (330)
T PRK11028          5 YIASPESQQIHVWNLNHE----------------GALTLLQVVDV-PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADD   67 (330)
T ss_pred             EEEcCCCCCEEEEEECCC----------------CceeeeeEEec-CCCCccEEECCCCCEEEEEECCCCcEEEEEECCC
Confidence            344567899999966321                12233444432 34577899999999887765 578899999863 


Q ss_pred             CeE--EEEEcccCCCEEEEEEcCCCCEEEEEeC-CCeEEEEECCCCCe---eEEEEecCCCCeEEEEEecCCCcEEEEEe
Q 004603          587 FTV--KSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTENPDY---SLRTFTGHSTTVMSLDFHPSKEDLLCSCD  660 (743)
Q Consensus       587 ~~~--i~~l~~H~~~V~~vafsp~~~~LaSgs~-Dg~VrvWDl~~~~~---~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs  660 (743)
                      +..  +.... .......++|+|++++|++++. ++.|.+||+.+...   .+..+. +...+.+++|+|+++.+++++.
T Consensus        68 g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~  145 (330)
T PRK11028         68 GALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCL  145 (330)
T ss_pred             CceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeC
Confidence            332  22222 2345678999999998887764 89999999974321   223332 3345678899999998888888


Q ss_pred             CCCcEEEEECCCCeeeE-----EEe-----ccCceeeecCCCEEEEEec-CCeEEEEeccc--------ceE--------
Q 004603          661 NNSEIRYWSINNGSCAG-----VFK-----VCNLMPIILKGCFILNSIF-NCYLLLHRIFL--------NLL--------  713 (743)
Q Consensus       661 ~Dg~IrvWDl~tg~~v~-----~~~-----~~~~i~~s~~g~~l~sgs~-Dg~I~vh~~~v--------~~l--------  713 (743)
                      .++.|++||+.+...+.     ...     +...+.|+++|.++++... ++.|.+|+...        ..+        
T Consensus       146 ~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~  225 (330)
T PRK11028        146 KEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFS  225 (330)
T ss_pred             CCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCC
Confidence            88999999998633221     111     1245789999999988876 88998887541        001        


Q ss_pred             ------EEEecCCCCEEEEEe-CCCeEEEeC
Q 004603          714 ------SVSEWCNPDEISTSS-WKDSCCSHR  737 (743)
Q Consensus       714 ------~v~~~~~~~~laSgs-~DG~V~iWd  737 (743)
                            .+...+++.+++++. .+++|.+|+
T Consensus       226 ~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~  256 (330)
T PRK11028        226 DTRWAADIHITPDGRHLYACDRTASLISVFS  256 (330)
T ss_pred             CCccceeEEECCCCCEEEEecCCCCeEEEEE
Confidence                  122334567777775 478899986

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.28  E-value=1.9e-09  Score=113.36  Aligned_cols=145  Identities=17%  Similarity=0.229  Sum_probs=119.3

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcc---cCCCEEEEEEcCCCCEEEEEe--CCCeEEEEECCCCC
Q 004603          556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE---HTQWITDVRFSPSLSRLATSS--ADRTVRVWDTENPD  630 (743)
Q Consensus       556 ~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~---H~~~V~~vafsp~~~~LaSgs--~Dg~VrvWDl~~~~  630 (743)
                      ..|.+|.++  .++|+++-.+. |.|||+++.+.+.++..   |...+.++.+++.+.+++--+  ..|.|.|||+.+-.
T Consensus        88 t~IL~VrmN--r~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~  164 (391)
T KOG2110|consen   88 TSILAVRMN--RKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQ  164 (391)
T ss_pred             CceEEEEEc--cceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccce
Confidence            458888885  45677766554 99999999999888754   455577777777777886543  37899999999855


Q ss_pred             eeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCc-EEEEECCCCeeeEEEeccC------ceeeecCCCEEEEEecCCeE
Q 004603          631 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE-IRYWSINNGSCAGVFKVCN------LMPIILKGCFILNSIFNCYL  703 (743)
Q Consensus       631 ~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~-IrvWDl~tg~~v~~~~~~~------~i~~s~~g~~l~sgs~Dg~I  703 (743)
                       ++.++..|++.+.+|+|+++|. +|+++|+.|+ |||+.+.+|..+..|+...      .++|++++.+|.+.+..++|
T Consensus       165 -~v~~I~aH~~~lAalafs~~G~-llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTV  242 (391)
T KOG2110|consen  165 -PVNTINAHKGPLAALAFSPDGT-LLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETV  242 (391)
T ss_pred             -eeeEEEecCCceeEEEECCCCC-EEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeE
Confidence             5889999999999999999986 8889998886 8999999999999998543      37799999999999999999


Q ss_pred             EE
Q 004603          704 LL  705 (743)
Q Consensus       704 ~v  705 (743)
                      .+
T Consensus       243 Hi  244 (391)
T KOG2110|consen  243 HI  244 (391)
T ss_pred             EE
Confidence            98

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.27  E-value=7.9e-10  Score=130.09  Aligned_cols=195  Identities=13%  Similarity=0.144  Sum_probs=136.5

Q ss_pred             cCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 004603          503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW  582 (743)
Q Consensus       503 ~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IW  582 (743)
                      .++..++++||.||+|++|+...-..            .+...+...++.--...|.++.+.+.+..+|.|+.||.|.+.
T Consensus      1058 ~~~~s~FvsgS~DGtVKvW~~~k~~~------------~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~ 1125 (1431)
T KOG1240|consen 1058 SEHTSLFVSGSDDGTVKVWNLRKLEG------------EGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVL 1125 (1431)
T ss_pred             CCCCceEEEecCCceEEEeeehhhhc------------CcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEE
Confidence            45668999999999999996654321            112333344444456779999999999999999999999999


Q ss_pred             ECCCC--e-----EEE-----------EE-------------------------------------cccCCCEEEEEEcC
Q 004603          583 CTESF--T-----VKS-----------TL-------------------------------------EEHTQWITDVRFSP  607 (743)
Q Consensus       583 d~~t~--~-----~i~-----------~l-------------------------------------~~H~~~V~~vafsp  607 (743)
                      +++..  +     ..+           .+                                     ....+.|++++.+|
T Consensus      1126 ~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp 1205 (1431)
T KOG1240|consen 1126 RIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDP 1205 (1431)
T ss_pred             EccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecC
Confidence            87631  0     000           00                                     01235799999999


Q ss_pred             CCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCC---cEEEEEe-CCCcEEEEECCCCeeeEEEeccC
Q 004603          608 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE---DLLCSCD-NNSEIRYWSINNGSCAGVFKVCN  683 (743)
Q Consensus       608 ~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~---~lL~Sgs-~Dg~IrvWDl~tg~~v~~~~~~~  683 (743)
                      .+.++++|...|.+-+||+|-+......-.++...++.|+.+|--+   ..+++++ ..+.|.+|++.+|.+-.++...+
T Consensus      1206 ~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~ 1285 (1431)
T KOG1240|consen 1206 WCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASD 1285 (1431)
T ss_pred             CceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCC
Confidence            9999999999999999999965442233335567888888887644   3444444 57789999999998777665431


Q ss_pred             c-----------------------eeeecCCCEEEEEecCCeEEEEecc
Q 004603          684 L-----------------------MPIILKGCFILNSIFNCYLLLHRIF  709 (743)
Q Consensus       684 ~-----------------------i~~s~~g~~l~sgs~Dg~I~vh~~~  709 (743)
                      .                       ..+...+.++++|+.|..|+.|+..
T Consensus      1286 ~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~ 1334 (1431)
T KOG1240|consen 1286 GAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPT 1334 (1431)
T ss_pred             CCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCC
Confidence            1                       1122345678888889888887654

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.26  E-value=4.3e-10  Score=113.33  Aligned_cols=151  Identities=17%  Similarity=0.255  Sum_probs=104.1

Q ss_pred             EEEEEcCCCCEEEEEeC---C-------CcEEEEECCC-CeEEEEEcc-cCCCEEEEEEcCCCCEEEEE--eCCCeEEEE
Q 004603          559 ESCHFSPDGKLLATGGH---D-------KKAVLWCTES-FTVKSTLEE-HTQWITDVRFSPSLSRLATS--SADRTVRVW  624 (743)
Q Consensus       559 ~siafspdg~~LaSgs~---D-------g~V~IWd~~t-~~~i~~l~~-H~~~V~~vafsp~~~~LaSg--s~Dg~VrvW  624 (743)
                      ..+.|+++|++|+.-..   |       +...||.++. ...+..+.- ..+.|.+++|+|+++.|++.  ..++.|.+|
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly   88 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY   88 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence            46789999987655433   2       2344555532 233334432 34569999999999987554  457899999


Q ss_pred             ECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEe--CCCcEEEEECCCCeeeEEEecc--CceeeecCCCEEEEEec-
Q 004603          625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD--NNSEIRYWSINNGSCAGVFKVC--NLMPIILKGCFILNSIF-  699 (743)
Q Consensus       625 Dl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs--~Dg~IrvWDl~tg~~v~~~~~~--~~i~~s~~g~~l~sgs~-  699 (743)
                      |++. . .+..+.  ...+..|.|+|+|..++++|.  ..|.|.+||+++.+.+..+...  +.+.++|+|++++++.. 
T Consensus        89 d~~~-~-~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~~t~~~WsPdGr~~~ta~t~  164 (194)
T PF08662_consen   89 DVKG-K-KIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHSDATDVEWSPDGRYLATATTS  164 (194)
T ss_pred             cCcc-c-EeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccCcEEEEEEcCCCCEEEEEEec
Confidence            9972 3 355553  567889999999986665542  3467999999999988877643  45789999999999875 


Q ss_pred             -----CCeEEEEecccceE
Q 004603          700 -----NCYLLLHRIFLNLL  713 (743)
Q Consensus       700 -----Dg~I~vh~~~v~~l  713 (743)
                           |+.++||+.....+
T Consensus       165 ~r~~~dng~~Iw~~~G~~l  183 (194)
T PF08662_consen  165 PRLRVDNGFKIWSFQGRLL  183 (194)
T ss_pred             cceeccccEEEEEecCeEe
Confidence                 55566666554433

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.26  E-value=9.1e-11  Score=121.99  Aligned_cols=170  Identities=14%  Similarity=0.174  Sum_probs=127.7

Q ss_pred             CEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcC--CCCEEEEEeCCCeEEEEECCCCCe-eEEEEecCC-CCe
Q 004603          568 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP--SLSRLATSSADRTVRVWDTENPDY-SLRTFTGHS-TTV  643 (743)
Q Consensus       568 ~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp--~~~~LaSgs~Dg~VrvWDl~~~~~-~l~~l~~h~-~~V  643 (743)
                      ..+|++...|.|++||..+++.+..|.+|...+..++|..  ....+.+|+.||+||+||+|.... .+..+..+. .+.
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f  120 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF  120 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence            5688888999999999999999999999999999999976  467899999999999999997543 344555565 344


Q ss_pred             EEEEEecCCCcEEEEEe----CCCcEEEEECCCCee-eEEEec-----cCceeeec-CCCEEEEEecCCeEEEEecc---
Q 004603          644 MSLDFHPSKEDLLCSCD----NNSEIRYWSINNGSC-AGVFKV-----CNLMPIIL-KGCFILNSIFNCYLLLHRIF---  709 (743)
Q Consensus       644 ~sl~fsp~g~~lL~Sgs----~Dg~IrvWDl~tg~~-v~~~~~-----~~~i~~s~-~g~~l~sgs~Dg~I~vh~~~---  709 (743)
                      .+++..-. ..++++|.    .|-.|.+||+|..+. ++.+..     .+.+.|+| +.+.|++|+.||.|.+.+..   
T Consensus       121 ~~ld~nck-~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~  199 (376)
T KOG1188|consen  121 ICLDLNCK-KNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDN  199 (376)
T ss_pred             eEeeccCc-CCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCc
Confidence            55555434 34776664    456799999998765 555432     25578887 56789999999999995532   


Q ss_pred             --------------cceEEEEecCCCCEEEEEeCCCeEEEeCCC
Q 004603          710 --------------LNLLSVSEWCNPDEISTSSWKDSCCSHREL  739 (743)
Q Consensus       710 --------------v~~l~v~~~~~~~~laSgs~DG~V~iWd~~  739 (743)
                                    +..+.|.... -..|.+-+..++..+|+.+
T Consensus       200 EeDaL~~viN~~sSI~~igw~~~~-ykrI~clTH~Etf~~~ele  242 (376)
T KOG1188|consen  200 EEDALLHVINHGSSIHLIGWLSKK-YKRIMCLTHMETFAIYELE  242 (376)
T ss_pred             chhhHHHhhcccceeeeeeeecCC-cceEEEEEccCceeEEEcc
Confidence                          3334443221 2379999999999999754

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.25  E-value=4e-11  Score=132.63  Aligned_cols=174  Identities=18%  Similarity=0.314  Sum_probs=133.6

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEE
Q 004603          557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF  636 (743)
Q Consensus       557 ~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l  636 (743)
                      .|..++|-|||..|+.+.. ..+.|||+..|..+.++++|.+.|+||+|+.+|++|++|+.|+.|.+|...-..  +..+
T Consensus        14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG--~LkY   90 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG--ILKY   90 (1081)
T ss_pred             chheeEECCCCceEEEecC-CEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccc--eeee
Confidence            6999999999998887764 469999999999999999999999999999999999999999999999865432  2333


Q ss_pred             ecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeE--EEeccCceeeecCCCEEEEEecCCeEEEEec------
Q 004603          637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG--VFKVCNLMPIILKGCFILNSIFNCYLLLHRI------  708 (743)
Q Consensus       637 ~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~--~~~~~~~i~~s~~g~~l~sgs~Dg~I~vh~~------  708 (743)
                       .|.+.|.|+.|+|-.. .|++|+.. ..-+|........+  ......++++..||.|++.|-.||+|.+...      
T Consensus        91 -SH~D~IQCMsFNP~~h-~LasCsLs-dFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~  167 (1081)
T KOG1538|consen   91 -SHNDAIQCMSFNPITH-QLASCSLS-DFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKV  167 (1081)
T ss_pred             -ccCCeeeEeecCchHH-Hhhhcchh-hccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcce
Confidence             4999999999999854 66688854 57889876543221  1112234668899999999999999999432      


Q ss_pred             ----------ccceEEEEecCC---CCEEEEEeCCCeEEEe
Q 004603          709 ----------FLNLLSVSEWCN---PDEISTSSWKDSCCSH  736 (743)
Q Consensus       709 ----------~v~~l~v~~~~~---~~~laSgs~DG~V~iW  736 (743)
                                .+-.+++++...   ...++...|..++.++
T Consensus       168 ~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy  208 (1081)
T KOG1538|consen  168 KIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFY  208 (1081)
T ss_pred             EEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEE
Confidence                      223444444332   3567888888877766

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.24  E-value=8.2e-11  Score=123.50  Aligned_cols=125  Identities=18%  Similarity=0.266  Sum_probs=105.1

Q ss_pred             EEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC------CCeEEEEEcc-cCCCEEEEEEcCCCCEEEEEeCCCe
Q 004603          548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE------SFTVKSTLEE-HTQWITDVRFSPSLSRLATSSADRT  620 (743)
Q Consensus       548 ~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~------t~~~i~~l~~-H~~~V~~vafsp~~~~LaSgs~Dg~  620 (743)
                      .+.+.+|++.|.+|.|+.++++|++|+.|..++||+++      +.+++..... |...|.|++|+....+|++|..+++
T Consensus        49 qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~  128 (609)
T KOG4227|consen   49 QKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGT  128 (609)
T ss_pred             hhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcce
Confidence            45567999999999999999999999999999999985      3466665544 4589999999998899999999999


Q ss_pred             EEEEECCCCCeeEEEEec--CCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCe
Q 004603          621 VRVWDTENPDYSLRTFTG--HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS  674 (743)
Q Consensus       621 VrvWDl~~~~~~l~~l~~--h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~  674 (743)
                      |.+.|+.+... +.++..  ..+.|+.+..+|. .++|++.+.++.|.+||++...
T Consensus       129 VI~HDiEt~qs-i~V~~~~~~~~~VY~m~~~P~-DN~~~~~t~~~~V~~~D~Rd~~  182 (609)
T KOG4227|consen  129 VIKHDIETKQS-IYVANENNNRGDVYHMDQHPT-DNTLIVVTRAKLVSFIDNRDRQ  182 (609)
T ss_pred             eEeeeccccee-eeeecccCcccceeecccCCC-CceEEEEecCceEEEEeccCCC
Confidence            99999998553 555542  2358999999999 5588899999999999998654

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.24  E-value=5.3e-10  Score=129.65  Aligned_cols=220  Identities=12%  Similarity=0.129  Sum_probs=144.5

Q ss_pred             ccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcC--CCCEEEEEeCCCcE
Q 004603          502 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP--DGKLLATGGHDKKA  579 (743)
Q Consensus       502 l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafsp--dg~~LaSgs~Dg~V  579 (743)
                      ++.....+++......|++|+...+..                +..+..-......|+.+.+-.  |..++++|+.||.|
T Consensus      1072 ~hpf~p~i~~ad~r~~i~vwd~e~~~~----------------l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvI 1135 (1387)
T KOG1517|consen 1072 FHPFEPQIAAADDRERIRVWDWEKGRL----------------LNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVI 1135 (1387)
T ss_pred             ecCCCceeEEcCCcceEEEEecccCce----------------eccccCCCCCCCccceeeeecccchhheeeeccCceE
Confidence            455567777777667888886655531                111111112345688888865  66799999999999


Q ss_pred             EEEECC-----CCeEEEEEcc---c----CCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEE
Q 004603          580 VLWCTE-----SFTVKSTLEE---H----TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLD  647 (743)
Q Consensus       580 ~IWd~~-----t~~~i~~l~~---H----~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~  647 (743)
                      |||+--     +.+.+..+.+   +    .+.=.-+.|.-...+|++++.-..|||||+.....+.....+.+..|+++.
T Consensus      1136 RIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS 1215 (1387)
T KOG1517|consen 1136 RIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALS 1215 (1387)
T ss_pred             EEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeec
Confidence            999632     2334443322   1    111134567665556666666899999999986554444445667788887


Q ss_pred             EecCCCcEEEEEeCCCcEEEEECCCCe---eeEEEeccCce------eeecCCC-EEEEEecCCeEEEEecccc------
Q 004603          648 FHPSKEDLLCSCDNNSEIRYWSINNGS---CAGVFKVCNLM------PIILKGC-FILNSIFNCYLLLHRIFLN------  711 (743)
Q Consensus       648 fsp~g~~lL~Sgs~Dg~IrvWDl~tg~---~v~~~~~~~~i------~~s~~g~-~l~sgs~Dg~I~vh~~~v~------  711 (743)
                      -+-.+..++++|..||.||+||.|...   .+..++.|+..      .+-+.|- .|++|+.||.|.+|+....      
T Consensus      1216 ~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~ 1295 (1387)
T KOG1517|consen 1216 ADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFL 1295 (1387)
T ss_pred             ccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccc
Confidence            666556789999999999999998643   45666666442      3445454 4999999999999887651      


Q ss_pred             -----------eEEEEecCCCCEEEEEeCCCeEEEeCC
Q 004603          712 -----------LLSVSEWCNPDEISTSSWKDSCCSHRE  738 (743)
Q Consensus       712 -----------~l~v~~~~~~~~laSgs~DG~V~iWd~  738 (743)
                                 ..++........+|||+. +.|+||+.
T Consensus      1296 ~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~ 1332 (1387)
T KOG1517|consen 1296 TIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSL 1332 (1387)
T ss_pred             eeeeccccCccceeeeeccCCCeeeecCc-ceEEEEec
Confidence                       111111222457888888 99999975

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.23  E-value=5.8e-10  Score=127.40  Aligned_cols=182  Identities=16%  Similarity=0.121  Sum_probs=131.6

Q ss_pred             CCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeE--EE----EEcccCCCEEEEEEcCC--CCEEEEEeCCCeEEEEE
Q 004603          555 TSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFTV--KS----TLEEHTQWITDVRFSPS--LSRLATSSADRTVRVWD  625 (743)
Q Consensus       555 ~~~V~siafsp-dg~~LaSgs~Dg~V~IWd~~t~~~--i~----~l~~H~~~V~~vafsp~--~~~LaSgs~Dg~VrvWD  625 (743)
                      ...|+|+.|+| +..++|.|+.+|.|.+||++.+..  ..    ....|+..|+.+.|..+  ..-|++++.||.|..|+
T Consensus       242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~  321 (555)
T KOG1587|consen  242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWD  321 (555)
T ss_pred             CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeee
Confidence            45699999999 788999999999999999987554  21    22468899999999764  34599999999999999


Q ss_pred             CCCCCeeEEEE-----e------cCCCCeEEEEEecCCCcEEEEEeCCCcEEEEE---CCCCeeeEEEecc---------
Q 004603          626 TENPDYSLRTF-----T------GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS---INNGSCAGVFKVC---------  682 (743)
Q Consensus       626 l~~~~~~l~~l-----~------~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWD---l~tg~~v~~~~~~---------  682 (743)
                      ++.-..+....     .      .-...+++++|.+..+..|+.|+++|.|..=+   .+.... ..++++         
T Consensus       322 ~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~-~~~~~~~~~~~h~g~  400 (555)
T KOG1587|consen  322 TDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPE-VSYKGHSTFITHIGP  400 (555)
T ss_pred             ccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccc-ccccccccccccCcc
Confidence            87644322111     1      12245889999999999999999999887733   222220 122221         


Q ss_pred             -CceeeecCCCEEEEEecCCeEEEEecc---------------cceEEEEecCCCCEEEEEeCCCeEEEeCC
Q 004603          683 -NLMPIILKGCFILNSIFNCYLLLHRIF---------------LNLLSVSEWCNPDEISTSSWKDSCCSHRE  738 (743)
Q Consensus       683 -~~i~~s~~g~~l~sgs~Dg~I~vh~~~---------------v~~l~v~~~~~~~~laSgs~DG~V~iWd~  738 (743)
                       ..+.++|-+.-++..+.|-++++|...               +..++|++.. +..++++..||.|.+||-
T Consensus       401 v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptr-pavF~~~d~~G~l~iWDL  471 (555)
T KOG1587|consen  401 VYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTR-PAVFATVDGDGNLDIWDL  471 (555)
T ss_pred             eEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcC-ceEEEEEcCCCceehhhh
Confidence             234455655555555559999998776               4556777765 688999999999999984

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.22  E-value=4.5e-11  Score=120.44  Aligned_cols=153  Identities=18%  Similarity=0.274  Sum_probs=119.6

Q ss_pred             CEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004603          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES  586 (743)
Q Consensus       507 ~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t  586 (743)
                      -+++.|-.++.|.+|+...+    +++..+.     ...+.+..+..|..+|.++.|.+....=++|+.+.++..|++..
T Consensus       166 ~lllaGyEsghvv~wd~S~~----~~~~~~~-----~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~  236 (323)
T KOG0322|consen  166 FLLLAGYESGHVVIWDLSTG----DKIIQLP-----QSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNH  236 (323)
T ss_pred             EEEEEeccCCeEEEEEccCC----ceeeccc-----cccccccchhhccCcceeeeechhhcCCcCCCccccceeeeecc
Confidence            46677888999999988765    2222211     12244556678999999999998666778888899999998863


Q ss_pred             C--e--EEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCC
Q 004603          587 F--T--VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN  662 (743)
Q Consensus       587 ~--~--~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~D  662 (743)
                      .  .  ....++-....|..+++.||++.+||+++|+.||||..++.. ++..++-|...|++|+|+|+. .++++++.|
T Consensus       237 s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~-pLAVLkyHsagvn~vAfspd~-~lmAaaskD  314 (323)
T KOG0322|consen  237 STGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLN-PLAVLKYHSAGVNAVAFSPDC-ELMAAASKD  314 (323)
T ss_pred             ccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCC-chhhhhhhhcceeEEEeCCCC-chhhhccCC
Confidence            2  1  111122223458899999999999999999999999999866 488999999999999999995 488999999


Q ss_pred             CcEEEEEC
Q 004603          663 SEIRYWSI  670 (743)
Q Consensus       663 g~IrvWDl  670 (743)
                      +.|.+|++
T Consensus       315 ~rISLWkL  322 (323)
T KOG0322|consen  315 ARISLWKL  322 (323)
T ss_pred             ceEEeeec
Confidence            99999986

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.20  E-value=1.7e-09  Score=124.25  Aligned_cols=217  Identities=15%  Similarity=0.183  Sum_probs=153.4

Q ss_pred             cCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 004603          503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW  582 (743)
Q Consensus       503 ~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IW  582 (743)
                      ++-.+++++|..||.|.+|.....              + ........+.-|.++|.+++|+++|.+|++||.+|.+.+|
T Consensus       214 spn~~~~Aa~d~dGrI~vw~d~~~--------------~-~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~W  278 (792)
T KOG1963|consen  214 SPNERYLAAGDSDGRILVWRDFGS--------------S-DDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLW  278 (792)
T ss_pred             ccccceEEEeccCCcEEEEecccc--------------c-cccccceEEEecccccceeEEecCCceEeecccceEEEEE
Confidence            334589999999999999933221              0 1112346678899999999999999999999999999999


Q ss_pred             ECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe--eEEEEe--------cCCCCeEEEEEecCC
Q 004603          583 CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY--SLRTFT--------GHSTTVMSLDFHPSK  652 (743)
Q Consensus       583 d~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~--~l~~l~--------~h~~~V~sl~fsp~g  652 (743)
                      .+.+++ ..-+..-.+.|..+.++||+.+.+....|..|.+....+...  .+..+.        ...+-.+.++++|.-
T Consensus       279 q~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~  357 (792)
T KOG1963|consen  279 QLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRT  357 (792)
T ss_pred             eecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCC
Confidence            999987 344445578899999999999999999999999987644221  111121        124557788999943


Q ss_pred             CcEEEEEeCCCcEEEEECCCCeeeEEEecc---------------CceeeecCCCEEEEEe--------cCCeE--EEE-
Q 004603          653 EDLLCSCDNNSEIRYWSINNGSCAGVFKVC---------------NLMPIILKGCFILNSI--------FNCYL--LLH-  706 (743)
Q Consensus       653 ~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~---------------~~i~~s~~g~~l~sgs--------~Dg~I--~vh-  706 (743)
                       ..++-++..+.|.+||+-+.+.+..+...               +.+..+..|.|+++.-        .|+.+  ++| 
T Consensus       358 -~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~  436 (792)
T KOG1963|consen  358 -NSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQ  436 (792)
T ss_pred             -CceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEE
Confidence             35667888999999999988766555421               2233445688877763        24333  333 


Q ss_pred             ------------------ecccceEEEEecCCCCEEEEEeCCCeEEEe
Q 004603          707 ------------------RIFLNLLSVSEWCNPDEISTSSWKDSCCSH  736 (743)
Q Consensus       707 ------------------~~~v~~l~v~~~~~~~~laSgs~DG~V~iW  736 (743)
                                        .....+.++........++++|.||.+++|
T Consensus       437 ~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW  484 (792)
T KOG1963|consen  437 YNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIW  484 (792)
T ss_pred             EcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEE
Confidence                              222333344333323489999999999999

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.18  E-value=1.3e-09  Score=123.21  Aligned_cols=144  Identities=17%  Similarity=0.138  Sum_probs=101.2

Q ss_pred             eEEEEEcCCCCEEEEEe-CCCcEEEE--ECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEe-CCCeEEEEECCCCCeeE
Q 004603          558 VESCHFSPDGKLLATGG-HDKKAVLW--CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENPDYSL  633 (743)
Q Consensus       558 V~siafspdg~~LaSgs-~Dg~V~IW--d~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs-~Dg~VrvWDl~~~~~~l  633 (743)
                      ..+++|+|||+.|+.++ .|+.+.||  |+.+++ +..+..|...+.++.|+|+++.|+.++ .++.++||++.......
T Consensus       250 ~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~  328 (429)
T PRK01742        250 NGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGA  328 (429)
T ss_pred             cCceeECCCCCEEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCe
Confidence            34689999999888764 68876665  665555 455666777888999999999776554 57888999875433323


Q ss_pred             EEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEec--cCceeeecCCCEEEEEecCCeEEEEe
Q 004603          634 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKV--CNLMPIILKGCFILNSIFNCYLLLHR  707 (743)
Q Consensus       634 ~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~--~~~i~~s~~g~~l~sgs~Dg~I~vh~  707 (743)
                      ..+ .+..  .++.|+|+|..+++++ .++ |.+||+.++++......  .....|+|+|.+|+.++.++.+.+|.
T Consensus       329 ~~l-~~~~--~~~~~SpDG~~ia~~~-~~~-i~~~Dl~~g~~~~lt~~~~~~~~~~sPdG~~i~~~s~~g~~~~l~  399 (429)
T PRK01742        329 SLV-GGRG--YSAQISADGKTLVMIN-GDN-VVKQDLTSGSTEVLSSTFLDESPSISPNGIMIIYSSTQGLGKVLQ  399 (429)
T ss_pred             EEe-cCCC--CCccCCCCCCEEEEEc-CCC-EEEEECCCCCeEEecCCCCCCCceECCCCCEEEEEEcCCCceEEE
Confidence            333 3443  4678999998665544 354 66799998876433222  23467999999999999888776654

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.17  E-value=1.3e-09  Score=112.59  Aligned_cols=184  Identities=11%  Similarity=0.145  Sum_probs=142.6

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC---CeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 004603          554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTES---FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD  630 (743)
Q Consensus       554 H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t---~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~  630 (743)
                      -..+|+|-+|++|+..+|.+...+.|.||....   .+..+++..|...|++|+|+|..+.|++|+.|..-+||....+.
T Consensus         9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~   88 (361)
T KOG1523|consen    9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGG   88 (361)
T ss_pred             ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCC
Confidence            346799999999999999999999999998765   45788999999999999999999999999999999999985433


Q ss_pred             --eeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEE---Ee-----ccCceeeecCCCEEEEEecC
Q 004603          631 --YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV---FK-----VCNLMPIILKGCFILNSIFN  700 (743)
Q Consensus       631 --~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~---~~-----~~~~i~~s~~g~~l~sgs~D  700 (743)
                        .+...+..|...+++|.|+|.+. .|++|+....|.||-++...--.+   ++     ...++.++|+...++.|+.|
T Consensus        89 ~WkptlvLlRiNrAAt~V~WsP~en-kFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D  167 (361)
T KOG1523|consen   89 TWKPTLVLLRINRAATCVKWSPKEN-KFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTD  167 (361)
T ss_pred             eeccceeEEEeccceeeEeecCcCc-eEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccC
Confidence              23445667889999999999865 777899899999998764321111   11     12457789999999999999


Q ss_pred             CeEEEEecccc------------------------------eEEEEecCCCCEEEEEeCCCeEEEeCC
Q 004603          701 CYLLLHRIFLN------------------------------LLSVSEWCNPDEISTSSWKDSCCSHRE  738 (743)
Q Consensus       701 g~I~vh~~~v~------------------------------~l~v~~~~~~~~laSgs~DG~V~iWd~  738 (743)
                      +..+|....|+                              +-.+.+...+..|+=.+.|++|.+-|.
T Consensus       168 ~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da  235 (361)
T KOG1523|consen  168 GKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDA  235 (361)
T ss_pred             cceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeec
Confidence            99998433322                              222333333667888888888877653

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.16  E-value=4.9e-10  Score=130.51  Aligned_cols=143  Identities=22%  Similarity=0.354  Sum_probs=119.8

Q ss_pred             CCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004603          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE  585 (743)
Q Consensus       506 ~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~  585 (743)
                      .-++++|+.-+.|-+|....+.                  .+ ..+.+|.+.|.++.|+.||+++++.|+|+++++|+++
T Consensus       145 ~~~i~~gsv~~~iivW~~~~dn------------------~p-~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~  205 (967)
T KOG0974|consen  145 ELYIASGSVFGEIIVWKPHEDN------------------KP-IRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPID  205 (967)
T ss_pred             EEEEEeccccccEEEEeccccC------------------Cc-ceecccCCceEEEEEccCCcEEEEEecCcceeeeecc
Confidence            3577888888889999655221                  11 1678999999999999999999999999999999999


Q ss_pred             CCeEEE-EEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCC-CCeEEEEEecCCCcEEEEEeCCC
Q 004603          586 SFTVKS-TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS-TTVMSLDFHPSKEDLLCSCDNNS  663 (743)
Q Consensus       586 t~~~i~-~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~-~~V~sl~fsp~g~~lL~Sgs~Dg  663 (743)
                      +.+... +.-+|+++|+.++|+|+  +++|++.|-+.++|+..- .. +.++.+|. ..+..++.++.. .+++|++.|+
T Consensus       206 s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~-~~-l~~y~~h~g~~iw~~~~~~~~-~~~vT~g~Ds  280 (967)
T KOG0974|consen  206 SREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNG-TQ-LEVYDEHSGKGIWKIAVPIGV-IIKVTGGNDS  280 (967)
T ss_pred             cccccCcccccccceeEEEEeccc--eeEEeccceEEEEEeccc-ce-ehhhhhhhhcceeEEEEcCCc-eEEEeeccCc
Confidence            977665 77799999999999998  999999999999997764 22 56788886 568999988764 5788999999


Q ss_pred             cEEEEECCC
Q 004603          664 EIRYWSINN  672 (743)
Q Consensus       664 ~IrvWDl~t  672 (743)
                      .|++||+..
T Consensus       281 ~lk~~~l~~  289 (967)
T KOG0974|consen  281 TLKLWDLNG  289 (967)
T ss_pred             chhhhhhhc
Confidence            999999875

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.16  E-value=2.5e-09  Score=113.10  Aligned_cols=193  Identities=17%  Similarity=0.231  Sum_probs=146.4

Q ss_pred             ccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcC-CCCEEEEEeCC--Cc
Q 004603          502 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHD--KK  578 (743)
Q Consensus       502 l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafsp-dg~~LaSgs~D--g~  578 (743)
                      +.-.+.+|.+|-.+|++.+|....+...               -.....+..+ ..+..+.-++ +..++++||..  ..
T Consensus       111 l~~~dg~Litc~~sG~l~~~~~k~~d~h---------------ss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~  174 (412)
T KOG3881|consen  111 LKLADGTLITCVSSGNLQVRHDKSGDLH---------------SSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINE  174 (412)
T ss_pred             hhhcCCEEEEEecCCcEEEEeccCCccc---------------cccceeeecC-CceeeeccCCCCCceEecCchhcccc
Confidence            4445678888888999999954433100               1122222233 3366666666 44567779988  88


Q ss_pred             EEEEECCCCeEEEEEcc---------cCCCEEEEEEcCC--CCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEE
Q 004603          579 AVLWCTESFTVKSTLEE---------HTQWITDVRFSPS--LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLD  647 (743)
Q Consensus       579 V~IWd~~t~~~i~~l~~---------H~~~V~~vafsp~--~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~  647 (743)
                      ++|||+...+.+..-+.         -.-+++++.|-+.  ...|++++.-+.||+||.+..+.++..|.--+.+|+++.
T Consensus       175 lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~  254 (412)
T KOG3881|consen  175 LKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTG  254 (412)
T ss_pred             eeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeee
Confidence            99999988754432211         1235788999886  788999999999999999999999999988889999999


Q ss_pred             EecCCCcEEEEEeCCCcEEEEECCCCeeeEE-Eecc----CceeeecCCCEEEEEecCCeEEEEecccc
Q 004603          648 FHPSKEDLLCSCDNNSEIRYWSINNGSCAGV-FKVC----NLMPIILKGCFILNSIFNCYLLLHRIFLN  711 (743)
Q Consensus       648 fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~-~~~~----~~i~~s~~g~~l~sgs~Dg~I~vh~~~v~  711 (743)
                      ..|++. ++++|..-+.+..||++.++...+ +++.    +.+.++|.+.++++++.|+.|+||+...+
T Consensus       255 l~p~gn-~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktr  322 (412)
T KOG3881|consen  255 LTPSGN-FIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTR  322 (412)
T ss_pred             ecCCCc-EEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccc
Confidence            999987 566888899999999999998777 5543    44778889999999999999999987763

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.15  E-value=2.7e-09  Score=122.62  Aligned_cols=209  Identities=17%  Similarity=0.125  Sum_probs=151.8

Q ss_pred             CEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCC---CEEEEEeCCCcEEEEE
Q 004603          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDG---KLLATGGHDKKAVLWC  583 (743)
Q Consensus       507 ~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg---~~LaSgs~Dg~V~IWd  583 (743)
                      +++... .+..|++|..                   .+...+..+.+|+.+++.+.+.|..   .++++++.||.|++||
T Consensus        29 k~l~~~-~~~~V~VyS~-------------------~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd   88 (792)
T KOG1963|consen   29 KFLFLC-TGNFVKVYST-------------------ATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWD   88 (792)
T ss_pred             cEEEEe-eCCEEEEEec-------------------chHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEec
Confidence            344433 4578889833                   3335666889999999999998843   4678999999999998


Q ss_pred             CCCCeEEEEEc---------------------------------------------------------------------
Q 004603          584 TESFTVKSTLE---------------------------------------------------------------------  594 (743)
Q Consensus       584 ~~t~~~i~~l~---------------------------------------------------------------------  594 (743)
                      ...+..++++.                                                                     
T Consensus        89 ~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~  168 (792)
T KOG1963|consen   89 WSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVD  168 (792)
T ss_pred             CCCcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEE
Confidence            76544433321                                                                     


Q ss_pred             ----------------------------------ccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECC---CCCeeEEEEe
Q 004603          595 ----------------------------------EHTQWITDVRFSPSLSRLATSSADRTVRVWDTE---NPDYSLRTFT  637 (743)
Q Consensus       595 ----------------------------------~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~---~~~~~l~~l~  637 (743)
                                                        .|+..++|++++|+++++++|..||.|.+|.--   ......+.+.
T Consensus       169 ~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lH  248 (792)
T KOG1963|consen  169 NNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLH  248 (792)
T ss_pred             cCCceEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEE
Confidence                                              255567999999999999999999999999632   2233456788


Q ss_pred             cCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEec----cCceeeecCCCEEEEEecCCeEEEEeccc---
Q 004603          638 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKV----CNLMPIILKGCFILNSIFNCYLLLHRIFL---  710 (743)
Q Consensus       638 ~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~----~~~i~~s~~g~~l~sgs~Dg~I~vh~~~v---  710 (743)
                      -|...|+++.|+++|.++| ||+..|.+.+|.+.+++. .-+..    ...+.++||+.+......|+.|.+-....   
T Consensus       249 WH~~~V~~L~fS~~G~~Ll-SGG~E~VLv~Wq~~T~~k-qfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~  326 (792)
T KOG1963|consen  249 WHHDEVNSLSFSSDGAYLL-SGGREGVLVLWQLETGKK-QFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEI  326 (792)
T ss_pred             ecccccceeEEecCCceEe-ecccceEEEEEeecCCCc-ccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhh
Confidence            8999999999999998655 999999999999999872 22221    24477889999999888898888722210   


Q ss_pred             --------------------ceEEEEecCCCCEEEEEeCCCeEEEeC
Q 004603          711 --------------------NLLSVSEWCNPDEISTSSWKDSCCSHR  737 (743)
Q Consensus       711 --------------------~~l~v~~~~~~~~laSgs~DG~V~iWd  737 (743)
                                          -...++.++-.+.++-.+..|.|-+||
T Consensus       327 k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~yd  373 (792)
T KOG1963|consen  327 KSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYD  373 (792)
T ss_pred             hhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEe
Confidence                                011122222246777788888888886

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.15  E-value=8.4e-10  Score=120.13  Aligned_cols=178  Identities=13%  Similarity=0.148  Sum_probs=126.1

Q ss_pred             CCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeE
Q 004603          480 SSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVE  559 (743)
Q Consensus       480 ~~~s~~~fs~dg~~~l~~~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~  559 (743)
                      ....+-.|++||.               -+.+.+.||.|++|.-                 .+   -...++.-...+|+
T Consensus       105 ~A~~~gRW~~dGt---------------gLlt~GEDG~iKiWSr-----------------sG---MLRStl~Q~~~~v~  149 (737)
T KOG1524|consen  105 AAISSGRWSPDGA---------------GLLTAGEDGVIKIWSR-----------------SG---MLRSTVVQNEESIR  149 (737)
T ss_pred             hhhhhcccCCCCc---------------eeeeecCCceEEEEec-----------------cc---hHHHHHhhcCceeE
Confidence            3445556777664               5788889999999922                 11   11122223455799


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecC
Q 004603          560 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGH  639 (743)
Q Consensus       560 siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h  639 (743)
                      |++|.|+...++-+-. +.+.|=-+.....+-.++.|.+-|.|+.|++..++++||+.|-..+|||..- . .+.+-..|
T Consensus       150 c~~W~p~S~~vl~c~g-~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G-~-~Lf~S~~~  226 (737)
T KOG1524|consen  150 CARWAPNSNSIVFCQG-GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQG-A-NLFTSAAE  226 (737)
T ss_pred             EEEECCCCCceEEecC-CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccC-c-ccccCChh
Confidence            9999997765554432 4566655554445567889999999999999999999999999999999763 3 35666679


Q ss_pred             CCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEeccCceeeecCCCEEEEEecCCeEEE
Q 004603          640 STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNLMPIILKGCFILNSIFNCYLLL  705 (743)
Q Consensus       640 ~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~~~i~~s~~g~~l~sgs~Dg~I~v  705 (743)
                      +-+|++++|+|+ . +++.++. .++|+=..+.|...       .+.+++||.-+++|...|.+.+
T Consensus       227 ey~ITSva~npd-~-~~~v~S~-nt~R~~~p~~GSif-------nlsWS~DGTQ~a~gt~~G~v~~  282 (737)
T KOG1524|consen  227 EYAITSVAFNPE-K-DYLLWSY-NTARFSSPRVGSIF-------NLSWSADGTQATCGTSTGQLIV  282 (737)
T ss_pred             ccceeeeeeccc-c-ceeeeee-eeeeecCCCccceE-------EEEEcCCCceeeccccCceEEE
Confidence            999999999999 3 4556664 36775444444322       2567888888888888777665

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.12  E-value=1.8e-09  Score=127.15  Aligned_cols=168  Identities=16%  Similarity=0.146  Sum_probs=124.7

Q ss_pred             eeeEEEeeCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCC-------CeEEEEEcccCCCEEEEEEcCCCCEEEEEe
Q 004603          545 FTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTES-------FTVKSTLEEHTQWITDVRFSPSLSRLATSS  616 (743)
Q Consensus       545 ~~~~~~l~~H~~~V~siafsp-dg~~LaSgs~Dg~V~IWd~~t-------~~~i~~l~~H~~~V~~vafsp~~~~LaSgs  616 (743)
                      ...+..+.+|+..|..++.++ ++.+|+|||.||+|||||++.       .+...++.-....+.++.+.+.++.+|.++
T Consensus      1038 G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t 1117 (1431)
T KOG1240|consen 1038 GILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVST 1117 (1431)
T ss_pred             ceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEc
Confidence            457888899999999999987 558999999999999999864       223344444467899999999999999999


Q ss_pred             CCCeEEEEECCCCCe------eEEEEecCC-CCeE-EEEEecC-CCcEEEEEeCCCcEEEEECCCCeeeEEEec------
Q 004603          617 ADRTVRVWDTENPDY------SLRTFTGHS-TTVM-SLDFHPS-KEDLLCSCDNNSEIRYWSINNGSCAGVFKV------  681 (743)
Q Consensus       617 ~Dg~VrvWDl~~~~~------~l~~l~~h~-~~V~-sl~fsp~-g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~------  681 (743)
                      .||.|++.+++-...      +.+....+. +.|. ..+|.-. +..+++.+..-+.|..||+++......++.      
T Consensus      1118 ~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~ 1197 (1431)
T KOG1240|consen 1118 KDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGL 1197 (1431)
T ss_pred             CCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccc
Confidence            999999999875211      111122222 2233 2333332 234777888889999999998766555442      


Q ss_pred             cCceeeecCCCEEEEEecCCeEEEEecccce
Q 004603          682 CNLMPIILKGCFILNSIFNCYLLLHRIFLNL  712 (743)
Q Consensus       682 ~~~i~~s~~g~~l~sgs~Dg~I~vh~~~v~~  712 (743)
                      .+.+++++.++|++.|+..|.+.+||.....
T Consensus      1198 vTSi~idp~~~WlviGts~G~l~lWDLRF~~ 1228 (1431)
T KOG1240|consen 1198 VTSIVIDPWCNWLVIGTSRGQLVLWDLRFRV 1228 (1431)
T ss_pred             eeEEEecCCceEEEEecCCceEEEEEeecCc
Confidence            3568899999999999999999999876543

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.11  E-value=1e-08  Score=107.59  Aligned_cols=200  Identities=14%  Similarity=0.174  Sum_probs=131.2

Q ss_pred             CCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCe
Q 004603          479 ASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKV  558 (743)
Q Consensus       479 s~~~s~~~fs~dg~~~l~~~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V  558 (743)
                      -+.+.++.|.|...              .-++.|+. ..|++|........    .+.... .......+....+| ..|
T Consensus       140 QrnvtclawRPlsa--------------selavgCr-~gIciW~~s~tln~----~r~~~~-~s~~~~qvl~~pgh-~pV  198 (445)
T KOG2139|consen  140 QRNVTCLAWRPLSA--------------SELAVGCR-AGICIWSDSRTLNA----NRNIRM-MSTHHLQVLQDPGH-NPV  198 (445)
T ss_pred             hcceeEEEeccCCc--------------ceeeeeec-ceeEEEEcCccccc----cccccc-ccccchhheeCCCC-cee
Confidence            34677788887554              34455554 56899944322111    110000 01111223344567 679


Q ss_pred             EEEEEcCCCCEEEEEeC-CCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEe
Q 004603          559 ESCHFSPDGKLLATGGH-DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT  637 (743)
Q Consensus       559 ~siafspdg~~LaSgs~-Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~  637 (743)
                      +++.|.+||..+++++. |..|+|||++++..+....---+.++-+.|+||+++|+.+..|+..++|.......+.+...
T Consensus       199 tsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~l  278 (445)
T KOG2139|consen  199 TSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWIL  278 (445)
T ss_pred             eEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceec
Confidence            99999999999999986 56799999999877665544466789999999999999999999999996654333333333


Q ss_pred             cCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCC-ee--------------eEEEe------c-------cCceeeec
Q 004603          638 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SC--------------AGVFK------V-------CNLMPIIL  689 (743)
Q Consensus       638 ~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg-~~--------------v~~~~------~-------~~~i~~s~  689 (743)
                       -.+.|...+|+|+|..+|++++..  -++|.+.-. ++              +..+.      +       ...+++.|
T Consensus       279 -gsgrvqtacWspcGsfLLf~~sgs--p~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDp  355 (445)
T KOG2139|consen  279 -GSGRVQTACWSPCGSFLLFACSGS--PRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDP  355 (445)
T ss_pred             -cCCceeeeeecCCCCEEEEEEcCC--ceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECC
Confidence             345899999999999999998854  455544311 10              00010      0       13478889


Q ss_pred             CCCEEEEEecCCe
Q 004603          690 KGCFILNSIFNCY  702 (743)
Q Consensus       690 ~g~~l~sgs~Dg~  702 (743)
                      .|.|+++-...+.
T Consensus       356 sGeyLav~fKg~~  368 (445)
T KOG2139|consen  356 SGEYLAVIFKGQS  368 (445)
T ss_pred             CCCEEEEEEcCCc
Confidence            9999998765443

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.11  E-value=1.2e-09  Score=110.28  Aligned_cols=154  Identities=17%  Similarity=0.218  Sum_probs=113.7

Q ss_pred             CCCCCeEEEEEcC-CCC--EEEEEeCCCcEEEEECCCC----------eEEEEEcccCCCEEEEEEcCCCCEEEEEeCCC
Q 004603          553 ASTSKVESCHFSP-DGK--LLATGGHDKKAVLWCTESF----------TVKSTLEEHTQWITDVRFSPSLSRLATSSADR  619 (743)
Q Consensus       553 ~H~~~V~siafsp-dg~--~LaSgs~Dg~V~IWd~~t~----------~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg  619 (743)
                      +..+.|.|..|.. ++.  +++.|-++|.|.+||+.++          +.+.....|..+|.++.|.+....=++|+.+.
T Consensus       148 ~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~d  227 (323)
T KOG0322|consen  148 SKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADD  227 (323)
T ss_pred             cccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccc
Confidence            4567788888654 333  4667778999999999987          33344467999999999998666667888899


Q ss_pred             eEEEEECCCC--CeeEE-EEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEeccC----ceeeecCCC
Q 004603          620 TVRVWDTENP--DYSLR-TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCN----LMPIILKGC  692 (743)
Q Consensus       620 ~VrvWDl~~~--~~~l~-~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~~----~i~~s~~g~  692 (743)
                      .+..|.+...  ...+. +..-..-.|..+..-||++ ++++++.|+.||||..++...+.+++.|.    .++|+|+..
T Consensus       228 kl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~K-IlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~  306 (323)
T KOG0322|consen  228 KLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGK-ILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCE  306 (323)
T ss_pred             cceeeeeccccCcccccceEEecCCCccceEEccCCc-EEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCc
Confidence            9999988643  22222 1222235688899999976 89999999999999999999988888663    356666666


Q ss_pred             EEEEEecCCeEEEEe
Q 004603          693 FILNSIFNCYLLLHR  707 (743)
Q Consensus       693 ~l~sgs~Dg~I~vh~  707 (743)
                      .++.++.|.+|.+|+
T Consensus       307 lmAaaskD~rISLWk  321 (323)
T KOG0322|consen  307 LMAAASKDARISLWK  321 (323)
T ss_pred             hhhhccCCceEEeee
Confidence            666666666666664

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.09  E-value=1.3e-09  Score=127.10  Aligned_cols=185  Identities=16%  Similarity=0.166  Sum_probs=136.6

Q ss_pred             CCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004603          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE  585 (743)
Q Consensus       506 ~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~  585 (743)
                      ...++.++.++.+.+|++........       ...+    +...+    ....-+-++++.-++++|+.-+.|.+|+..
T Consensus        99 ~k~i~l~~~~ns~~i~d~~~~~~~~~-------i~~~----er~~l----~~~~~~g~s~~~~~i~~gsv~~~iivW~~~  163 (967)
T KOG0974|consen   99 NKKIALVTSRNSLLIRDSKNSSVLSK-------IQSD----ERCTL----YSSLIIGDSAEELYIASGSVFGEIIVWKPH  163 (967)
T ss_pred             cceEEEEEcCceEEEEecccCceehh-------cCCC----ceEEE----EeEEEEeccCcEEEEEeccccccEEEEecc
Confidence            45667777777888876544421100       0000    01111    012234456677789999999999999986


Q ss_pred             CCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcE
Q 004603          586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI  665 (743)
Q Consensus       586 t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~I  665 (743)
                      ..+.-..+.+|.+.|.++.|+-+|.+++|+|.|.++|+|++++.+....+.-+|+..|+.++|+|.   .+++++.|.+.
T Consensus       164 ~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n---~i~t~gedctc  240 (967)
T KOG0974|consen  164 EDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN---RIITVGEDCTC  240 (967)
T ss_pred             ccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc---eeEEeccceEE
Confidence            433333688999999999999999999999999999999999977655577789999999999987   67799999999


Q ss_pred             EEEECCCCeeeEEEeccC-----ceeeecCCCEEEEEecCCeEEEEecc
Q 004603          666 RYWSINNGSCAGVFKVCN-----LMPIILKGCFILNSIFNCYLLLHRIF  709 (743)
Q Consensus       666 rvWDl~tg~~v~~~~~~~-----~i~~s~~g~~l~sgs~Dg~I~vh~~~  709 (743)
                      ++|+.+ ++.+.+++.|.     .+.+.++...+++++.|+.+++|+..
T Consensus       241 rvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~  288 (967)
T KOG0974|consen  241 RVWGVN-GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLN  288 (967)
T ss_pred             EEEecc-cceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhh
Confidence            999765 44445666552     36677788889999999999997654

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.09  E-value=3.8e-09  Score=111.13  Aligned_cols=118  Identities=22%  Similarity=0.336  Sum_probs=96.7

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEe--CCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCe-EEEEECCCC
Q 004603          553 ASTSKVESCHFSPDGKLLATGG--HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT-VRVWDTENP  629 (743)
Q Consensus       553 ~H~~~V~siafspdg~~LaSgs--~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~-VrvWDl~~~  629 (743)
                      .|...+.++++++.+.++|-=+  .-|.|.|||+.+.+.+.++..|.+.|-|++|+++|.+|||++..|+ ||||.+.++
T Consensus       127 ~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G  206 (391)
T KOG2110|consen  127 PNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEG  206 (391)
T ss_pred             CCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCc
Confidence            3445577777777777887543  3588999999999999999999999999999999999999999887 599999987


Q ss_pred             CeeEEEEecCC--CCeEEEEEecCCCcEEEEEeCCCcEEEEECCC
Q 004603          630 DYSLRTFTGHS--TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN  672 (743)
Q Consensus       630 ~~~l~~l~~h~--~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~t  672 (743)
                      .. +..|..-.  ..|++|+|+|++. +|++.+..++|+||.+..
T Consensus       207 ~k-l~eFRRG~~~~~IySL~Fs~ds~-~L~~sS~TeTVHiFKL~~  249 (391)
T KOG2110|consen  207 QK-LYEFRRGTYPVSIYSLSFSPDSQ-FLAASSNTETVHIFKLEK  249 (391)
T ss_pred             cE-eeeeeCCceeeEEEEEEECCCCC-eEEEecCCCeEEEEEecc
Confidence            76 66665322  4589999999987 666777788999998864

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.09  E-value=2.6e-08  Score=112.84  Aligned_cols=157  Identities=12%  Similarity=0.097  Sum_probs=113.0

Q ss_pred             EEeeCCCCCeEEEEEcCCCCEEEEEeC---CCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEE-EEeCCCe--EE
Q 004603          549 QLIPASTSKVESCHFSPDGKLLATGGH---DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADRT--VR  622 (743)
Q Consensus       549 ~~l~~H~~~V~siafspdg~~LaSgs~---Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~La-Sgs~Dg~--Vr  622 (743)
                      ..+..|...|.+.+|+|||+.|+..+.   +..|.+||+.+++.. .+..+.+.+.+.+|+|+|+.|+ +.+.++.  |.
T Consensus       195 ~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy  273 (435)
T PRK05137        195 RYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIY  273 (435)
T ss_pred             EEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCCceEE
Confidence            445677888999999999998887764   467999999887654 4555667788999999998765 5555655  77


Q ss_pred             EEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCC--cEEEEECCCCeeeEEEec---cCceeeecCCCEEEEE
Q 004603          623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKV---CNLMPIILKGCFILNS  697 (743)
Q Consensus       623 vWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg--~IrvWDl~tg~~v~~~~~---~~~i~~s~~g~~l~sg  697 (743)
                      +||+.++.  +..+..+.....+.+|+|+|..++++...++  .|++||+..++.......   .....++|+|.+|+..
T Consensus       274 ~~d~~~~~--~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~  351 (435)
T PRK05137        274 TMDLRSGT--TTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTPVWSPRGDLIAFT  351 (435)
T ss_pred             EEECCCCc--eEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCeEECCCCCEEEEE
Confidence            77888754  4556666666778999999987776665444  588889887655433322   2336799999999876


Q ss_pred             ecC---CeEEEEec
Q 004603          698 IFN---CYLLLHRI  708 (743)
Q Consensus       698 s~D---g~I~vh~~  708 (743)
                      +.+   ..|.+++.
T Consensus       352 ~~~~~~~~i~~~d~  365 (435)
T PRK05137        352 KQGGGQFSIGVMKP  365 (435)
T ss_pred             EcCCCceEEEEEEC
Confidence            543   24555553

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.09  E-value=1.3e-08  Score=115.20  Aligned_cols=158  Identities=17%  Similarity=0.161  Sum_probs=108.3

Q ss_pred             EeeCCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEE-EEeCCCeEEEEE
Q 004603          550 LIPASTSKVESCHFSPDGKLLATGGHD---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADRTVRVWD  625 (743)
Q Consensus       550 ~l~~H~~~V~siafspdg~~LaSgs~D---g~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~La-Sgs~Dg~VrvWD  625 (743)
                      .+..+...|.+.+|+|||+.|+..+.+   ..|.+||+.+++... +....+.+.+.+|+||++.|+ +.+.++...||.
T Consensus       190 ~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~  268 (427)
T PRK02889        190 SALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYT  268 (427)
T ss_pred             EeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEEE
Confidence            344667789999999999998887643   359999999887543 333445677899999998876 567788777776


Q ss_pred             CCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEC--CCCeeeEE-Eec--cCceeeecCCCEEEEEecC
Q 004603          626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI--NNGSCAGV-FKV--CNLMPIILKGCFILNSIFN  700 (743)
Q Consensus       626 l~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl--~tg~~v~~-~~~--~~~i~~s~~g~~l~sgs~D  700 (743)
                      ++.....+..+..+...+.+..|+|+|+.+++++..++...||.+  .+++.... +.+  .....++|+|.+|+..+.+
T Consensus       269 ~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~  348 (427)
T PRK02889        269 VNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRV  348 (427)
T ss_pred             EECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEcc
Confidence            532222245565566667788999999988776665666666654  44543222 222  1236799999999877655


Q ss_pred             C---eEEEEec
Q 004603          701 C---YLLLHRI  708 (743)
Q Consensus       701 g---~I~vh~~  708 (743)
                      +   .|.+++.
T Consensus       349 ~g~~~I~v~d~  359 (427)
T PRK02889        349 GGAFKLYVQDL  359 (427)
T ss_pred             CCcEEEEEEEC
Confidence            4   4666654

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.07  E-value=2.1e-08  Score=113.61  Aligned_cols=157  Identities=20%  Similarity=0.149  Sum_probs=111.0

Q ss_pred             EEeeCCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEE-EEeCCC--eEE
Q 004603          549 QLIPASTSKVESCHFSPDGKLLATGGHD---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADR--TVR  622 (743)
Q Consensus       549 ~~l~~H~~~V~siafspdg~~LaSgs~D---g~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~La-Sgs~Dg--~Vr  622 (743)
                      ..+..|...|.+.+|+|||+.|+.++.+   ..|.+||+.+++... +..+.+.+.+++|+|+++.|+ +.+.++  .|+
T Consensus       197 ~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy  275 (433)
T PRK04922        197 QTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDGNPEIY  275 (433)
T ss_pred             eEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCCCceEE
Confidence            3455677789999999999998887743   369999998876543 334455566889999998775 555555  599


Q ss_pred             EEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCc--EEEEECCCCeeeEEE-ec--cCceeeecCCCEEEEE
Q 004603          623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE--IRYWSINNGSCAGVF-KV--CNLMPIILKGCFILNS  697 (743)
Q Consensus       623 vWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~--IrvWDl~tg~~v~~~-~~--~~~i~~s~~g~~l~sg  697 (743)
                      +||+.++.  +..+..+......++|+|+|..++++...++.  |.++|+.+++..... .+  .....++|+|.+|+..
T Consensus       276 ~~d~~~g~--~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~  353 (433)
T PRK04922        276 VMDLGSRQ--LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIAMV  353 (433)
T ss_pred             EEECCCCC--eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEE
Confidence            99998765  34555566666789999999877777665655  667787776643322 22  1246899999998876


Q ss_pred             ecCC---eEEEEec
Q 004603          698 IFNC---YLLLHRI  708 (743)
Q Consensus       698 s~Dg---~I~vh~~  708 (743)
                      +.++   .|.+|+.
T Consensus       354 ~~~~~~~~I~v~d~  367 (433)
T PRK04922        354 HGSGGQYRIAVMDL  367 (433)
T ss_pred             ECCCCceeEEEEEC
Confidence            5432   4666664

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.05  E-value=9.2e-10  Score=118.98  Aligned_cols=194  Identities=15%  Similarity=0.128  Sum_probs=138.8

Q ss_pred             eeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEE---------------------------------
Q 004603          546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKST---------------------------------  592 (743)
Q Consensus       546 ~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~---------------------------------  592 (743)
                      .....|..|.+.|..|.|+..|..|++|+.|..|.+||.-.++.+..                                 
T Consensus       133 ~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr  212 (559)
T KOG1334|consen  133 RLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVR  212 (559)
T ss_pred             hhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCcee
Confidence            44567789999999999999999999999999999998754332221                                 


Q ss_pred             ---------------EcccCCCEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCe--eEEEEecCCC---CeEEEEEecC
Q 004603          593 ---------------LEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDY--SLRTFTGHST---TVMSLDFHPS  651 (743)
Q Consensus       593 ---------------l~~H~~~V~~vafsp~-~~~LaSgs~Dg~VrvWDl~~~~~--~l~~l~~h~~---~V~sl~fsp~  651 (743)
                                     +..|.+.|..++.-|+ ...|.|++.|+.|.-+|++....  .+.+-..+..   ..++++.+|.
T Consensus       213 ~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~  292 (559)
T KOG1334|consen  213 VSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPR  292 (559)
T ss_pred             eeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCC
Confidence                           1247777888888885 45688899999999999886432  1222223333   5688999999


Q ss_pred             CCcEEEEEeCCCcEEEEECCCCee------eEEEec----------cCceeeecCCCEEEEEecCCeEEE----------
Q 004603          652 KEDLLCSCDNNSEIRYWSINNGSC------AGVFKV----------CNLMPIILKGCFILNSIFNCYLLL----------  705 (743)
Q Consensus       652 g~~lL~Sgs~Dg~IrvWDl~tg~~------v~~~~~----------~~~i~~s~~g~~l~sgs~Dg~I~v----------  705 (743)
                      ..+.+++++.|-.+||||.+.-..      +..+..          .+++.++.++.-+++...|-.|.+          
T Consensus       293 nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~  372 (559)
T KOG1334|consen  293 NTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSE  372 (559)
T ss_pred             CccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCC
Confidence            999999999999999999875321      222221          244667777776666666666655          


Q ss_pred             -----------------EecccceEEEEecCC-CCEEEEEeCCCeEEEeCCC
Q 004603          706 -----------------HRIFLNLLSVSEWCN-PDEISTSSWKDSCCSHREL  739 (743)
Q Consensus       706 -----------------h~~~v~~l~v~~~~~-~~~laSgs~DG~V~iWd~~  739 (743)
                                       |...-++..+.++++ ..++++|+.-|.|.||+..
T Consensus       373 p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~  424 (559)
T KOG1334|consen  373 PDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKK  424 (559)
T ss_pred             CCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecc
Confidence                             222333445555543 4799999999999999875

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.04  E-value=6.5e-10  Score=119.51  Aligned_cols=160  Identities=13%  Similarity=0.184  Sum_probs=129.3

Q ss_pred             eeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEE
Q 004603          544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV  623 (743)
Q Consensus       544 ~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~Vrv  623 (743)
                      ...++++++.|.. |..+.|-|.--+|++++..|.++.-|+.+|+.+..+..-.+.+..++-+|-.-.+-+|...|+|.+
T Consensus       199 ~GtElHClk~~~~-v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSl  277 (545)
T KOG1272|consen  199 NGTELHCLKRHIR-VARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSL  277 (545)
T ss_pred             CCcEEeehhhcCc-hhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEe
Confidence            3467788888765 999999998889999999999999999999999998888888999999998889999999999999


Q ss_pred             EECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEec-c--CceeeecCCCEEEEEecC
Q 004603          624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKV-C--NLMPIILKGCFILNSIFN  700 (743)
Q Consensus       624 WDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~-~--~~i~~s~~g~~l~sgs~D  700 (743)
                      |...... ++..+..|.++|.+|+++++|. +++|.+.|..|+|||+++...+.++.. +  ..++++..|  +++.+..
T Consensus       278 WSP~ske-PLvKiLcH~g~V~siAv~~~G~-YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~Sqkg--lLA~~~G  353 (545)
T KOG1272|consen  278 WSPNSKE-PLVKILCHRGPVSSIAVDRGGR-YMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKG--LLALSYG  353 (545)
T ss_pred             cCCCCcc-hHHHHHhcCCCcceEEECCCCc-EEeecccccceeEeeeccccccceeecCCCcccccccccc--ceeeecC
Confidence            9998754 4667778999999999999987 666888899999999998877666654 2  234455444  3334444


Q ss_pred             CeEEEEec
Q 004603          701 CYLLLHRI  708 (743)
Q Consensus       701 g~I~vh~~  708 (743)
                      ..|.+|..
T Consensus       354 ~~v~iw~d  361 (545)
T KOG1272|consen  354 DHVQIWKD  361 (545)
T ss_pred             Ceeeeehh
Confidence            45666543

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.03  E-value=1e-08  Score=106.96  Aligned_cols=231  Identities=17%  Similarity=0.252  Sum_probs=159.9

Q ss_pred             cCCCCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCC-
Q 004603          476 HNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAS-  554 (743)
Q Consensus       476 ~~~s~~~s~~~fs~dg~~~l~~~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H-  554 (743)
                      ..-..-++++.|..+|               .+|++|..+|.|.+|.-.....             + .......+..| 
T Consensus        22 vteadiis~vef~~~G---------------e~LatGdkgGRVv~f~r~~~~~-------------~-ey~~~t~fqshe   72 (433)
T KOG1354|consen   22 VTEADIISAVEFDHYG---------------ERLATGDKGGRVVLFEREKLYK-------------G-EYNFQTEFQSHE   72 (433)
T ss_pred             echhcceeeEEeeccc---------------ceEeecCCCCeEEEeecccccc-------------c-ceeeeeeeeccC
Confidence            3344556667777766               6899999999999994333221             1 22222333333 


Q ss_pred             -----------CCCeEEEEEcCCCC--EEEEEeCCCcEEEEECCCCe---------------------------------
Q 004603          555 -----------TSKVESCHFSPDGK--LLATGGHDKKAVLWCTESFT---------------------------------  588 (743)
Q Consensus       555 -----------~~~V~siafspdg~--~LaSgs~Dg~V~IWd~~t~~---------------------------------  588 (743)
                                 ..+|..|.|.+++.  .++..+.|++|++|-+....                                 
T Consensus        73 pEFDYLkSleieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~ve  152 (433)
T KOG1354|consen   73 PEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVE  152 (433)
T ss_pred             cccchhhhhhhhhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceee
Confidence                       34688999998654  67777889999999764211                                 


Q ss_pred             --EEEEE-cccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCee--EEEEecCC-----CCeEEEEEecCCCcEEEE
Q 004603          589 --VKSTL-EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS--LRTFTGHS-----TTVMSLDFHPSKEDLLCS  658 (743)
Q Consensus       589 --~i~~l-~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~--l~~l~~h~-----~~V~sl~fsp~g~~lL~S  658 (743)
                        +.+.+ .+|+.-|.++.++.|...++++. |=.|.+|.+.-...+  +..++.+.     ..|++..|||....+|+-
T Consensus       153 a~prRv~aNaHtyhiNSIS~NsD~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~Y  231 (433)
T KOG1354|consen  153 ASPRRVYANAHTYHINSISVNSDKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVY  231 (433)
T ss_pred             eeeeeeccccceeEeeeeeecCccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEE
Confidence              01111 36888999999999988888874 889999998654332  23333333     468999999998888988


Q ss_pred             EeCCCcEEEEECCCCe-eeEE---Ee----------------ccCceeeecCCCEEEEEecCCeEEEEeccc--------
Q 004603          659 CDNNSEIRYWSINNGS-CAGV---FK----------------VCNLMPIILKGCFILNSIFNCYLLLHRIFL--------  710 (743)
Q Consensus       659 gs~Dg~IrvWDl~tg~-~v~~---~~----------------~~~~i~~s~~g~~l~sgs~Dg~I~vh~~~v--------  710 (743)
                      .+..|+||+-|+|... |...   |.                ....+.|+..|+|+++...- +|++|+...        
T Consensus       232 SSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyl-tvk~wD~nme~~pv~t~  310 (433)
T KOG1354|consen  232 SSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYL-TVKLWDLNMEAKPVETY  310 (433)
T ss_pred             ecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccc-eeEEEeccccCCcceEE
Confidence            8889999999999432 1111   11                11346799999999987654 788888632        


Q ss_pred             --------------------ceEEEEecCCCCEEEEEeCCCeEEEeC
Q 004603          711 --------------------NLLSVSEWCNPDEISTSSWKDSCCSHR  737 (743)
Q Consensus       711 --------------------~~l~v~~~~~~~~laSgs~DG~V~iWd  737 (743)
                                          ..+..++.++..++.||++...+++++
T Consensus       311 ~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~  357 (433)
T KOG1354|consen  311 PVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFN  357 (433)
T ss_pred             eehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEec
Confidence                                123345555577999999999999998

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.02  E-value=1.1e-09  Score=132.55  Aligned_cols=180  Identities=22%  Similarity=0.307  Sum_probs=141.0

Q ss_pred             cCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 004603          503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW  582 (743)
Q Consensus       503 ~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IW  582 (743)
                      +++..+-.+|+.|+.|++|.+..+.                .....++  +-...|+.+.|+..|+.+..+..||.+.+|
T Consensus      2217 Hp~~~~Yltgs~dgsv~~~~w~~~~----------------~v~~~rt--~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~ 2278 (2439)
T KOG1064|consen 2217 HPSDPYYLTGSQDGSVRMFEWGHGQ----------------QVVCFRT--AGNSRVTRSRFNHQGNKFGIVDGDGDLSLW 2278 (2439)
T ss_pred             CCCCceEEecCCCceEEEEeccCCC----------------eEEEeec--cCcchhhhhhhcccCCceeeeccCCceeec
Confidence            3446788999999999999654431                1112222  223789999999999999999999999999


Q ss_pred             ECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeC---CCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEE
Q 004603          583 CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA---DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC  659 (743)
Q Consensus       583 d~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~---Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sg  659 (743)
                      .+. .++......|.....+++|-.  ..+++++.   ++.|.+||.-.+...-..-+.|.+.++++++.|... +|++|
T Consensus      2279 q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~q-llisg 2354 (2439)
T KOG1064|consen 2279 QAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQ-LLISG 2354 (2439)
T ss_pred             ccC-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcce-EEEec
Confidence            987 677778888999999999864  66777653   789999997543321222278999999999999854 78899


Q ss_pred             eCCCcEEEEECCCCeeeEEEeccCceeeecCCCEEEEEecCCeEEEEeccc
Q 004603          660 DNNSEIRYWSINNGSCAGVFKVCNLMPIILKGCFILNSIFNCYLLLHRIFL  710 (743)
Q Consensus       660 s~Dg~IrvWDl~tg~~v~~~~~~~~i~~s~~g~~l~sgs~Dg~I~vh~~~v  710 (743)
                      +.+|.|++||++..+.++.+..     +. ...++++|+..|.++||+...
T Consensus      2355 gr~G~v~l~D~rqrql~h~~~~-----~~-~~~~f~~~ss~g~ikIw~~s~ 2399 (2439)
T KOG1064|consen 2355 GRKGEVCLFDIRQRQLRHTFQA-----LD-TREYFVTGSSEGNIKIWRLSE 2399 (2439)
T ss_pred             CCcCcEEEeehHHHHHHHHhhh-----hh-hhheeeccCcccceEEEEccc
Confidence            9999999999999888777765     33 677899999999999987653

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.01  E-value=1.8e-09  Score=117.88  Aligned_cols=132  Identities=16%  Similarity=0.199  Sum_probs=104.0

Q ss_pred             CCeEEEEEcC-CCCEEEEEeCCCcEEEEECCC--------------C--------------eEEEEEcccCCCEEEEEEc
Q 004603          556 SKVESCHFSP-DGKLLATGGHDKKAVLWCTES--------------F--------------TVKSTLEEHTQWITDVRFS  606 (743)
Q Consensus       556 ~~V~siafsp-dg~~LaSgs~Dg~V~IWd~~t--------------~--------------~~i~~l~~H~~~V~~vafs  606 (743)
                      ..|+||.|-| +...|+.+..+|.+.+||...              +              .++..+..-.+.|...+|+
T Consensus       220 tsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS  299 (636)
T KOG2394|consen  220 SSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFS  299 (636)
T ss_pred             cceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEc
Confidence            6799999999 556788888999999997531              0              1112222234578889999


Q ss_pred             CCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEeccCc--
Q 004603          607 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNL--  684 (743)
Q Consensus       607 p~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~~~--  684 (743)
                      |||.+||+.+.||.+||||..+.. .+..++..-+...||+|+|||+ ++++|++|..|.||.+...+.+..-.+|..  
T Consensus       300 ~DG~~LA~VSqDGfLRvF~fdt~e-Llg~mkSYFGGLLCvcWSPDGK-yIvtGGEDDLVtVwSf~erRVVARGqGHkSWV  377 (636)
T KOG2394|consen  300 PDGKYLATVSQDGFLRIFDFDTQE-LLGVMKSYFGGLLCVCWSPDGK-YIVTGGEDDLVTVWSFEERRVVARGQGHKSWV  377 (636)
T ss_pred             CCCceEEEEecCceEEEeeccHHH-HHHHHHhhccceEEEEEcCCcc-EEEecCCcceEEEEEeccceEEEeccccccce
Confidence            999999999999999999998744 3556666778899999999998 666999999999999999998887777744  


Q ss_pred             --eeeec
Q 004603          685 --MPIIL  689 (743)
Q Consensus       685 --i~~s~  689 (743)
                        ++|.|
T Consensus       378 s~VaFDp  384 (636)
T KOG2394|consen  378 SVVAFDP  384 (636)
T ss_pred             eeEeecc
Confidence              45554

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.00  E-value=5.7e-08  Score=99.75  Aligned_cols=119  Identities=18%  Similarity=0.180  Sum_probs=98.7

Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE--EEEEcccCCCEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCeeEE
Q 004603          558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTV--KSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLR  634 (743)
Q Consensus       558 V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~--i~~l~~H~~~V~~vafsp-~~~~LaSgs~Dg~VrvWDl~~~~~~l~  634 (743)
                      ..++.|++.+..++++-.+|.+.+-+......  +..+++|...++...|+. +.+++++|+.|+.+..||+|.+..++.
T Consensus       124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~  203 (339)
T KOG0280|consen  124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIW  203 (339)
T ss_pred             eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceee
Confidence            56888999999999999999998666554433  347899999999999976 467899999999999999996555454


Q ss_pred             E-EecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCC-Ceee
Q 004603          635 T-FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCA  676 (743)
Q Consensus       635 ~-l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~t-g~~v  676 (743)
                      . .+-|...|.+|.-+|..+.++++|+.|..|++||.|+ ++++
T Consensus       204 ~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl  247 (339)
T KOG0280|consen  204 HNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPL  247 (339)
T ss_pred             ecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCcc
Confidence            4 5668999999999998888999999999999999994 4543

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.00  E-value=6e-09  Score=110.35  Aligned_cols=163  Identities=13%  Similarity=0.086  Sum_probs=127.8

Q ss_pred             CCCCEEEEeeCC--CcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCC--CCEEEEEeCCCcE
Q 004603          504 DMDRFVDDGSLD--DNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD--GKLLATGGHDKKA  579 (743)
Q Consensus       504 ~~~~~l~sGs~D--~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspd--g~~LaSgs~Dg~V  579 (743)
                      .+..++++|+..  +.+++|+....       ..+|..........--.   -.-.++++.|-+.  ...||++..-+.|
T Consensus       159 ~~p~Iva~GGke~~n~lkiwdle~~-------~qiw~aKNvpnD~L~Lr---VPvW~tdi~Fl~g~~~~~fat~T~~hqv  228 (412)
T KOG3881|consen  159 TDPYIVATGGKENINELKIWDLEQS-------KQIWSAKNVPNDRLGLR---VPVWITDIRFLEGSPNYKFATITRYHQV  228 (412)
T ss_pred             CCCceEecCchhcccceeeeecccc-------eeeeeccCCCCccccce---eeeeeccceecCCCCCceEEEEecceeE
Confidence            345788889998  88999966544       22333222111000000   0124778999886  7899999999999


Q ss_pred             EEEECCCC-eEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEE
Q 004603          580 VLWCTESF-TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS  658 (743)
Q Consensus       580 ~IWd~~t~-~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~S  658 (743)
                      ++||.+.+ +++..|.--...|+++...|.++.|++|..-+.+..||++.+....+.+.+..+.|.+|..||.++ ++++
T Consensus       229 R~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~-~las  307 (412)
T KOG3881|consen  229 RLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHP-VLAS  307 (412)
T ss_pred             EEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCc-eEEe
Confidence            99999864 577788777889999999999999999999999999999998876667999999999999999876 8889


Q ss_pred             EeCCCcEEEEECCCCeeeE
Q 004603          659 CDNNSEIRYWSINNGSCAG  677 (743)
Q Consensus       659 gs~Dg~IrvWDl~tg~~v~  677 (743)
                      |+.|..|||+|+.+.+.+.
T Consensus       308 ~GLDRyvRIhD~ktrkll~  326 (412)
T KOG3881|consen  308 CGLDRYVRIHDIKTRKLLH  326 (412)
T ss_pred             eccceeEEEeecccchhhh
Confidence            9999999999999866543

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.00  E-value=5.4e-09  Score=113.15  Aligned_cols=232  Identities=14%  Similarity=0.140  Sum_probs=153.8

Q ss_pred             CCEEEEeeCCCcEEEEecCCCCCC-----------------------------CCccccccccCCCceeeeEEEeeCCCC
Q 004603          506 DRFVDDGSLDDNVESFLSPDDADP-----------------------------RDRVGRSAEVGKGFTFTEFQLIPASTS  556 (743)
Q Consensus       506 ~~~l~sGs~D~~V~iw~s~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~l~~H~~  556 (743)
                      +.++++||.|..|.+|++......                             ++.-++...........-.+.+..|.+
T Consensus       154 Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g  233 (559)
T KOG1334|consen  154 GDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEG  233 (559)
T ss_pred             CceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecceecccccC
Confidence            368899999999999976544211                             011111111111111222455667999


Q ss_pred             CeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCeEEEEE---cccCC---CEEEEEEcCC-CCEEEEEeCCCeEEEEECCC
Q 004603          557 KVESCHFSPD-GKLLATGGHDKKAVLWCTESFTVKSTL---EEHTQ---WITDVRFSPS-LSRLATSSADRTVRVWDTEN  628 (743)
Q Consensus       557 ~V~siafspd-g~~LaSgs~Dg~V~IWd~~t~~~i~~l---~~H~~---~V~~vafsp~-~~~LaSgs~Dg~VrvWDl~~  628 (743)
                      .|.-++.-|+ ...|.+++.|+.|.-+|++...+...+   +.+..   ..++++.+|. ...+++++.|-.+|+||.+.
T Consensus       234 ~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~  313 (559)
T KOG1334|consen  234 PVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRR  313 (559)
T ss_pred             ccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccc
Confidence            9999999994 457999999999999998875433222   23333   5778999995 45899999999999999875


Q ss_pred             CCe-----eEEEEec------CCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCC--C----------eee-EEEeccCc
Q 004603          629 PDY-----SLRTFTG------HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN--G----------SCA-GVFKVCNL  684 (743)
Q Consensus       629 ~~~-----~l~~l~~------h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~t--g----------~~v-~~~~~~~~  684 (743)
                      -..     .+..+..      ..-.|++++|+.++..+|++-. |-.|+++.-..  |          ..+ ++|++|..
T Consensus       314 ~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYn-De~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN  392 (559)
T KOG1334|consen  314 IDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYN-DEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRN  392 (559)
T ss_pred             hhhccccchhhhcCCccccccCcccceeEEecCCccceeeeec-ccceEEeccccccCCCCCCCcchhhccchhhccccc
Confidence            321     1222222      2245899999988888886655 66789884332  2          122 33777743


Q ss_pred             ------e-eeecCCCEEEEEecCCeEEEEecccc------------eEEEEecCCCCEEEEEeCCCeEEEeCC
Q 004603          685 ------M-PIILKGCFILNSIFNCYLLLHRIFLN------------LLSVSEWCNPDEISTSSWKDSCCSHRE  738 (743)
Q Consensus       685 ------i-~~s~~g~~l~sgs~Dg~I~vh~~~v~------------~l~v~~~~~~~~laSgs~DG~V~iWd~  738 (743)
                            + -|-|...|+++|+.-|.|.||+....            +-++.+.+.--.|||+|.|--|+||..
T Consensus       393 ~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP  465 (559)
T KOG1334|consen  393 SRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTP  465 (559)
T ss_pred             ccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeeecC
Confidence                  2 25588899999999999999986531            112222222458999999999999965

>PRK02889 tolB translocation protein TolB; Provisional

Probab=98.99  E-value=2.7e-08  Score=112.46  Aligned_cols=144  Identities=15%  Similarity=0.149  Sum_probs=96.3

Q ss_pred             CCCeEEEEEcCCCCEEE-EEeCCCcEEEEEC--CCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeC-CCeEEEEEC--CC
Q 004603          555 TSKVESCHFSPDGKLLA-TGGHDKKAVLWCT--ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDT--EN  628 (743)
Q Consensus       555 ~~~V~siafspdg~~La-Sgs~Dg~V~IWd~--~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~-Dg~VrvWDl--~~  628 (743)
                      .+.+.+.+|+|||+.|+ +.+.|+...||.+  .++. ...+..|...+....|+|||+.|+..+. ++...+|.+  ..
T Consensus       239 ~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~  317 (427)
T PRK02889        239 KGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASG  317 (427)
T ss_pred             CCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCC
Confidence            34567899999998776 5677887777654  4443 4556666666778899999998876554 566667755  44


Q ss_pred             CCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCC--cEEEEECCCCeeeEEEec--cCceeeecCCCEEEEEecCC
Q 004603          629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKV--CNLMPIILKGCFILNSIFNC  701 (743)
Q Consensus       629 ~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg--~IrvWDl~tg~~v~~~~~--~~~i~~s~~g~~l~sgs~Dg  701 (743)
                      +..  ..+..+.......+|+|+|..+++++..++  .|.+||+.+++.......  .....|+|+|.+|+..+.++
T Consensus       318 g~~--~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~~~~~~p~~spdg~~l~~~~~~~  392 (427)
T PRK02889        318 GAA--QRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTDTTRDESPSFAPNGRYILYATQQG  392 (427)
T ss_pred             Cce--EEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccCCCCccCceECCCCCEEEEEEecC
Confidence            332  222222333456899999987765554333  699999998865433222  24467999999988877654

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=98.97  E-value=5e-09  Score=108.56  Aligned_cols=114  Identities=18%  Similarity=0.368  Sum_probs=90.2

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEE-EEEeCCCeEEEEECCCCCeeEEEEec
Q 004603          560 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL-ATSSADRTVRVWDTENPDYSLRTFTG  638 (743)
Q Consensus       560 siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~L-aSgs~Dg~VrvWDl~~~~~~l~~l~~  638 (743)
                      -++|||+|++||+++.- .+.|-|.++.+....|.- -..|..+.|.-+..++ .....|+.|.+|++..++. ...+..
T Consensus        13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew-~ckIde   89 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEW-YCKIDE   89 (447)
T ss_pred             ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeeccee-EEEecc
Confidence            47899999999999855 788889887665443332 3567788898876655 4556789999999998775 445555


Q ss_pred             CCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeee
Q 004603          639 HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA  676 (743)
Q Consensus       639 h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v  676 (743)
                      ....+.+++|+|+|+++|.+...|-.|.||.+.+.++.
T Consensus        90 g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~  127 (447)
T KOG4497|consen   90 GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGY  127 (447)
T ss_pred             CCCcceeeeECCCcceEeeeecceeEEEEEEeccceeE
Confidence            66789999999999999999999999999999987654

>PRK03629 tolB translocation protein TolB; Provisional

Probab=98.97  E-value=1.2e-07  Score=107.41  Aligned_cols=142  Identities=15%  Similarity=0.144  Sum_probs=98.3

Q ss_pred             eEEEEEcCCCCEEEEE-eCCC--cEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeC-CCeEEEE--ECCCCCe
Q 004603          558 VESCHFSPDGKLLATG-GHDK--KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVW--DTENPDY  631 (743)
Q Consensus       558 V~siafspdg~~LaSg-s~Dg--~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~-Dg~VrvW--Dl~~~~~  631 (743)
                      +.+++|+|||+.|+.. +.++  .|.+||+++++... +..+...+....|+|+++.|+.++. ++...||  |+.++. 
T Consensus       245 ~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~-  322 (429)
T PRK03629        245 NGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGA-  322 (429)
T ss_pred             cCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCC-
Confidence            4568999999987754 4444  48889998877654 4444556788999999998876665 4444555  666544 


Q ss_pred             eEEEEecCCCCeEEEEEecCCCcEEEEEeCC--CcEEEEECCCCeeeEEEec--cCceeeecCCCEEEEEecCCe
Q 004603          632 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN--SEIRYWSINNGSCAGVFKV--CNLMPIILKGCFILNSIFNCY  702 (743)
Q Consensus       632 ~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~D--g~IrvWDl~tg~~v~~~~~--~~~i~~s~~g~~l~sgs~Dg~  702 (743)
                       ...+..+...+.+.+|+|+|+.+++++..+  ..|.+||+.+++.......  .....|+|||.+|+..+.++.
T Consensus       323 -~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~~~~~~p~~SpDG~~i~~~s~~~~  396 (429)
T PRK03629        323 -PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDTFLDETPSIAPNGTMVIYSSSQGM  396 (429)
T ss_pred             -eEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeCCCCCCCCceECCCCCEEEEEEcCCC
Confidence             334443444567789999998777666544  3588899988865422222  234679999999999888764

>PRK03629 tolB translocation protein TolB; Provisional

Probab=98.97  E-value=1.1e-07  Score=107.48  Aligned_cols=184  Identities=18%  Similarity=0.114  Sum_probs=118.7

Q ss_pred             eeCCCCCeEEEEEcCCCCEEEEEeC---CCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEE-eCCC--eEEEE
Q 004603          551 IPASTSKVESCHFSPDGKLLATGGH---DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS-SADR--TVRVW  624 (743)
Q Consensus       551 l~~H~~~V~siafspdg~~LaSgs~---Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSg-s~Dg--~VrvW  624 (743)
                      +..+...+.+.+|+|||+.|+..+.   +..|.+||+.+++... +....+.+..++|+|||+.|+.. +.++  .|++|
T Consensus       194 lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~  272 (429)
T PRK03629        194 VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVM  272 (429)
T ss_pred             eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEE
Confidence            3456678999999999998886542   3568999998876433 22233445678999999988754 4454  58899


Q ss_pred             ECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEE--EECCCCeeeEEEe-c--cCceeeecCCCEEEEEec
Q 004603          625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY--WSINNGSCAGVFK-V--CNLMPIILKGCFILNSIF  699 (743)
Q Consensus       625 Dl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~Irv--WDl~tg~~v~~~~-~--~~~i~~s~~g~~l~sgs~  699 (743)
                      |+.++..  ..+..+...+...+|+|+|..++++...++...|  +|+.+++...... +  .....++|+|.+|+..+.
T Consensus       273 d~~tg~~--~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~  350 (429)
T PRK03629        273 DLASGQI--RQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSS  350 (429)
T ss_pred             ECCCCCE--EEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEEc
Confidence            9987653  4444455667889999999877766655555444  4777665432221 1  134678999999887654


Q ss_pred             C-C--eEEEEecccc----------eEEEEecCCCCEEEEEeCCCe---EEEeC
Q 004603          700 N-C--YLLLHRIFLN----------LLSVSEWCNPDEISTSSWKDS---CCSHR  737 (743)
Q Consensus       700 D-g--~I~vh~~~v~----------~l~v~~~~~~~~laSgs~DG~---V~iWd  737 (743)
                      + +  .|.+++....          .....+.+++..|+..+.++.   +.+|+
T Consensus       351 ~~g~~~I~~~dl~~g~~~~Lt~~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~  404 (429)
T PRK03629        351 NGGQQHIAKQDLATGGVQVLTDTFLDETPSIAPNGTMVIYSSSQGMGSVLNLVS  404 (429)
T ss_pred             cCCCceEEEEECCCCCeEEeCCCCCCCCceECCCCCEEEEEEcCCCceEEEEEE
Confidence            3 2  3555543211          111233445777888887764   45554

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=98.94  E-value=1.6e-08  Score=106.07  Aligned_cols=148  Identities=16%  Similarity=0.238  Sum_probs=111.0

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcc-cCCCEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCe--
Q 004603          556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-HTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDY--  631 (743)
Q Consensus       556 ~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~-H~~~V~~vafsp~-~~~LaSgs~Dg~VrvWDl~~~~~--  631 (743)
                      ..+..++|++.-..+|++..|.+|++||-.. ++...++. -...|+|++|.|. +..|+.|+ .+-|.+|.......  
T Consensus        99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgC-r~gIciW~~s~tln~~  176 (445)
T KOG2139|consen   99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGC-RAGICIWSDSRTLNAN  176 (445)
T ss_pred             cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeee-cceeEEEEcCcccccc
Confidence            3477899999877899999999999999765 44444432 2457999999995 55667766 45589998643211  


Q ss_pred             ---------e--EEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEE-e---ccCceeeecCCCEEEE
Q 004603          632 ---------S--LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF-K---VCNLMPIILKGCFILN  696 (743)
Q Consensus       632 ---------~--l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~-~---~~~~i~~s~~g~~l~s  696 (743)
                               +  +....+| ..|+++.|.+||..++.++-.|..|+|||..++.++.-. +   +.+-+.++|||.++++
T Consensus       177 r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfa  255 (445)
T KOG2139|consen  177 RNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFA  255 (445)
T ss_pred             cccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEE
Confidence                     1  2223355 679999999998866655556788999999999876544 2   2345779999999999


Q ss_pred             EecCCeEEEE
Q 004603          697 SIFNCYLLLH  706 (743)
Q Consensus       697 gs~Dg~I~vh  706 (743)
                      ++.|+..++|
T Consensus       256 At~davfrlw  265 (445)
T KOG2139|consen  256 ATCDAVFRLW  265 (445)
T ss_pred             ecccceeeee
Confidence            9999999997

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=98.94  E-value=2e-07  Score=104.66  Aligned_cols=157  Identities=18%  Similarity=0.151  Sum_probs=110.4

Q ss_pred             EEeeCCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEE-EEeCCC--eEE
Q 004603          549 QLIPASTSKVESCHFSPDGKLLATGGHD---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADR--TVR  622 (743)
Q Consensus       549 ~~l~~H~~~V~siafspdg~~LaSgs~D---g~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~La-Sgs~Dg--~Vr  622 (743)
                      ..+..+...+.+.+|+|||++|+.++.+   ..|++||+.+++... +..+...+.+++|+|+++.|+ +.+.++  .|+
T Consensus       183 ~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~  261 (417)
T TIGR02800       183 QTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIY  261 (417)
T ss_pred             EEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEECCCCCccEE
Confidence            3444566678999999999999887654   479999998876543 334556677899999998775 444444  588


Q ss_pred             EEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCC--cEEEEECCCCeeeEEEec---cCceeeecCCCEEEEE
Q 004603          623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKV---CNLMPIILKGCFILNS  697 (743)
Q Consensus       623 vWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg--~IrvWDl~tg~~v~~~~~---~~~i~~s~~g~~l~sg  697 (743)
                      +||+.++.  ...+..+...+....|+|+|..++++...++  .|.+||+.+++.......   .....++++|.+++..
T Consensus       262 ~~d~~~~~--~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~~~  339 (417)
T TIGR02800       262 VMDLDGKQ--LTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIAFV  339 (417)
T ss_pred             EEECCCCC--EEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEEEE
Confidence            89988754  3444445555667899999987776665444  588888887765433222   1346789999999988


Q ss_pred             ecCC---eEEEEec
Q 004603          698 IFNC---YLLLHRI  708 (743)
Q Consensus       698 s~Dg---~I~vh~~  708 (743)
                      +.++   .|.+++.
T Consensus       340 ~~~~~~~~i~~~d~  353 (417)
T TIGR02800       340 HREGGGFNIAVMDL  353 (417)
T ss_pred             EccCCceEEEEEeC
Confidence            7765   5555554

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK05137 tolB translocation protein TolB; Provisional

Probab=98.93  E-value=1.3e-07  Score=107.31  Aligned_cols=146  Identities=13%  Similarity=0.088  Sum_probs=100.4

Q ss_pred             eeCCCCCeEEEEEcCCCCEEE-EEeCCCc--EEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeC-CC--eEEEE
Q 004603          551 IPASTSKVESCHFSPDGKLLA-TGGHDKK--AVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DR--TVRVW  624 (743)
Q Consensus       551 l~~H~~~V~siafspdg~~La-Sgs~Dg~--V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~-Dg--~VrvW  624 (743)
                      +..+.+.+.+.+|+|||+.|+ +.+.++.  |.+||+.+++. ..+..+...+...+|+||++.|+..+. ++  .|++|
T Consensus       241 l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~  319 (435)
T PRK05137        241 VGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVM  319 (435)
T ss_pred             eecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEE
Confidence            344556688999999998765 5566655  77778887665 446666667788999999998877663 33  68888


Q ss_pred             ECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCC--CcEEEEECCCCeeeEEEec---cCceeeecCCCEEEEEec
Q 004603          625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN--SEIRYWSINNGSCAGVFKV---CNLMPIILKGCFILNSIF  699 (743)
Q Consensus       625 Dl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~D--g~IrvWDl~tg~~v~~~~~---~~~i~~s~~g~~l~sgs~  699 (743)
                      |+..+.  ...+..+...+....|+|+|+.++++....  ..|.+||+..+. ...+..   .....|+|+|.+|+..+.
T Consensus       320 d~~g~~--~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~-~~~lt~~~~~~~p~~spDG~~i~~~~~  396 (435)
T PRK05137        320 NADGSN--PRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG-ERILTSGFLVEGPTWAPNGRVIMFFRQ  396 (435)
T ss_pred             ECCCCC--eEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc-eEeccCCCCCCCCeECCCCCEEEEEEc
Confidence            887644  334443455677789999998777655433  368888986553 333332   244679999999877654


Q ss_pred             C
Q 004603          700 N  700 (743)
Q Consensus       700 D  700 (743)
                      +
T Consensus       397 ~  397 (435)
T PRK05137        397 T  397 (435)
T ss_pred             c
Confidence            3

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.93  E-value=9.6e-09  Score=109.33  Aligned_cols=163  Identities=17%  Similarity=0.213  Sum_probs=111.7

Q ss_pred             cCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 004603          503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW  582 (743)
Q Consensus       503 ~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IW  582 (743)
                      .+..++++++..+....+++......             +........+......|..+..+.....+-.+++...+.+|
T Consensus        71 s~~~~llAv~~~~K~~~~f~~~~~~~-------------~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~  137 (390)
T KOG3914|consen   71 SDSGRLVAVATSSKQRAVFDYRENPK-------------GAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDIL  137 (390)
T ss_pred             CCCceEEEEEeCCCceEEEEEecCCC-------------cceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeee
Confidence            34457888888877776765544321             11111222222223334444444333344445566667777


Q ss_pred             ECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCC
Q 004603          583 CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN  662 (743)
Q Consensus       583 d~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~D  662 (743)
                      ....+.+ ..+-||-..+++|+|+||+.+|+|+..|..|||-........-..+-||+..|..++.-++  +.|.|++.|
T Consensus       138 s~~~~~~-~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~--~~LlS~sGD  214 (390)
T KOG3914|consen  138 SADSGRC-EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN--YLLLSGSGD  214 (390)
T ss_pred             cccccCc-chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC--ceeeecCCC
Confidence            7766444 3456899999999999999999999999999998776543322344589999999999876  357799999


Q ss_pred             CcEEEEECCCCeeeEEEec
Q 004603          663 SEIRYWSINNGSCAGVFKV  681 (743)
Q Consensus       663 g~IrvWDl~tg~~v~~~~~  681 (743)
                      ++|++||+++|++++++..
T Consensus       215 ~tlr~Wd~~sgk~L~t~dl  233 (390)
T KOG3914|consen  215 KTLRLWDITSGKLLDTCDL  233 (390)
T ss_pred             CcEEEEecccCCcccccch
Confidence            9999999999999877754

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=98.93  E-value=2.6e-08  Score=104.02  Aligned_cols=151  Identities=23%  Similarity=0.364  Sum_probs=110.1

Q ss_pred             CEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC--
Q 004603          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT--  584 (743)
Q Consensus       507 ~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~--  584 (743)
                      +.|.+|=..+++.-+...++               -......+....|...|..+-|+-...++++.+.|+.+. |.+  
T Consensus        81 ~~L~vg~~ngtvtefs~sed---------------fnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~-~hc~e  144 (404)
T KOG1409|consen   81 RRLYVGQDNGTVTEFALSED---------------FNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFA-WHCTE  144 (404)
T ss_pred             eEEEEEEecceEEEEEhhhh---------------hhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceE-EEeec
Confidence            56677777777777644332               122334455556777777777776666677766665432 211  


Q ss_pred             ----------------------------------------CCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEE
Q 004603          585 ----------------------------------------ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW  624 (743)
Q Consensus       585 ----------------------------------------~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvW  624 (743)
                                                              ....++.++.+|.+.|++++|.|...+|++|..|..|.+|
T Consensus       145 ~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~w  224 (404)
T KOG1409|consen  145 SGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMW  224 (404)
T ss_pred             cCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEE
Confidence                                                    1223456678999999999999999999999999999999


Q ss_pred             ECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCe
Q 004603          625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS  674 (743)
Q Consensus       625 Dl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~  674 (743)
                      |+--.+.....+.+|...|..+...+.-. .+++++.||.|.+||++..+
T Consensus       225 digg~~g~~~el~gh~~kV~~l~~~~~t~-~l~S~~edg~i~~w~mn~~r  273 (404)
T KOG1409|consen  225 DIGGRKGTAYELQGHNDKVQALSYAQHTR-QLISCGEDGGIVVWNMNVKR  273 (404)
T ss_pred             eccCCcceeeeeccchhhhhhhhhhhhhe-eeeeccCCCeEEEEecccee
Confidence            99766666778889999999998877644 56699999999999997543

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=98.92  E-value=1.9e-09  Score=116.00  Aligned_cols=177  Identities=16%  Similarity=0.186  Sum_probs=144.1

Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEe
Q 004603          558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT  637 (743)
Q Consensus       558 V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~  637 (743)
                      -+.+.|+.+|+.++.|+..|.|..+|..+++....+.. ...|.++.|-.+..+||++ ....++|||-. +.+ ++.++
T Consensus       132 PY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq~~AVA-QK~y~yvYD~~-GtE-lHClk  207 (545)
T KOG1272|consen  132 PYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHNEQFFAVA-QKKYVYVYDNN-GTE-LHCLK  207 (545)
T ss_pred             CeeeeecCCccEEEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcchHHHHhh-hhceEEEecCC-CcE-Eeehh
Confidence            56788999999999999999999999999988777754 4568999998777777776 47889999954 343 77777


Q ss_pred             cCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEecc----CceeeecCCCEEEEEecCCeEEEEec-----
Q 004603          638 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVC----NLMPIILKGCFILNSIFNCYLLLHRI-----  708 (743)
Q Consensus       638 ~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~----~~i~~s~~g~~l~sgs~Dg~I~vh~~-----  708 (743)
                      .| ..|..+.|-|. .++|++++..|.++.-|+.+|+.+..+...    ..+.-.|....+-.|..+|+|.+|..     
T Consensus       208 ~~-~~v~rLeFLPy-HfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skeP  285 (545)
T KOG1272|consen  208 RH-IRVARLEFLPY-HFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEP  285 (545)
T ss_pred             hc-Cchhhhcccch-hheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcch
Confidence            65 46899999998 579999999999999999999998877643    33667788888999999999999754     


Q ss_pred             ---------ccceEEEEecCCCCEEEEEeCCCeEEEeCCCccc
Q 004603          709 ---------FLNLLSVSEWCNPDEISTSSWKDSCCSHRELYLY  742 (743)
Q Consensus       709 ---------~v~~l~v~~~~~~~~laSgs~DG~V~iWd~~~~~  742 (743)
                               .+..+++..  .+.+++|.|.|..|+|||-+.++
T Consensus       286 LvKiLcH~g~V~siAv~~--~G~YMaTtG~Dr~~kIWDlR~~~  326 (545)
T KOG1272|consen  286 LVKILCHRGPVSSIAVDR--GGRYMATTGLDRKVKIWDLRNFY  326 (545)
T ss_pred             HHHHHhcCCCcceEEECC--CCcEEeecccccceeEeeecccc
Confidence                     344555544  48899999999999999988765

>PRK04922 tolB translocation protein TolB; Provisional

Probab=98.92  E-value=8.5e-08  Score=108.66  Aligned_cols=143  Identities=15%  Similarity=0.126  Sum_probs=97.6

Q ss_pred             CCCeEEEEEcCCCCEEE-EEeCCC--cEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeC-CCe--EEEEECCC
Q 004603          555 TSKVESCHFSPDGKLLA-TGGHDK--KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DRT--VRVWDTEN  628 (743)
Q Consensus       555 ~~~V~siafspdg~~La-Sgs~Dg--~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~-Dg~--VrvWDl~~  628 (743)
                      .+.+.+++|+|||+.|+ +.+.++  .|++||+.+++.. .+..|......++|+|+++.|+.++. ++.  |.++|+.+
T Consensus       247 ~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~  325 (433)
T PRK04922        247 RGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASG  325 (433)
T ss_pred             CCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC
Confidence            34456889999998765 555555  5999999887654 45556666678999999998876663 554  66667766


Q ss_pred             CCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCC--cEEEEECCCCeeeEEEec--cCceeeecCCCEEEEEecC
Q 004603          629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKV--CNLMPIILKGCFILNSIFN  700 (743)
Q Consensus       629 ~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg--~IrvWDl~tg~~v~~~~~--~~~i~~s~~g~~l~sgs~D  700 (743)
                      +..  ..+..+......++|+|+|..++++...++  .|.+||+.+++......+  .....++++|.+|+..+.+
T Consensus       326 g~~--~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt~~~~~~~p~~spdG~~i~~~s~~  399 (433)
T PRK04922        326 GSA--ERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTLTPGSLDESPSFAPNGSMVLYATRE  399 (433)
T ss_pred             CCe--EEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEECCCCCCCCCceECCCCCEEEEEEec
Confidence            543  223223344557899999997776554433  699999988765422222  2346799999988776654

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.91  E-value=4.6e-07  Score=94.10  Aligned_cols=149  Identities=11%  Similarity=0.140  Sum_probs=112.8

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC-CCeEEEEEcccC--CCEEEEEEcCCCCEEEE-EeCCCeEEEEECCCC
Q 004603          554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTE-SFTVKSTLEEHT--QWITDVRFSPSLSRLAT-SSADRTVRVWDTENP  629 (743)
Q Consensus       554 H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~-t~~~i~~l~~H~--~~V~~vafsp~~~~LaS-gs~Dg~VrvWDl~~~  629 (743)
                      ...+|.+|.+.++  .|++.- +++|+||... +.+.++.++.-.  ..+.+++-+-+..+||. |-.-|.|.|-|+...
T Consensus        93 f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~  169 (346)
T KOG2111|consen   93 FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLAST  169 (346)
T ss_pred             eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhc
Confidence            3467999999755  455554 5689999987 566666664332  33444433334445544 345799999999865


Q ss_pred             Ce-eEEEEecCCCCeEEEEEecCCCcEEEEEeCCCc-EEEEECCCCeeeEEEecc------CceeeecCCCEEEEEecCC
Q 004603          630 DY-SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE-IRYWSINNGSCAGVFKVC------NLMPIILKGCFILNSIFNC  701 (743)
Q Consensus       630 ~~-~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~-IrvWDl~tg~~v~~~~~~------~~i~~s~~g~~l~sgs~Dg  701 (743)
                      .. +-..+..|.+.|.+++.+-+|. ++||+|..|+ |||||..+|+.+.+++..      -.++|+|++.||++.|+.|
T Consensus       170 ~~~~p~~I~AH~s~Iacv~Ln~~Gt-~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKg  248 (346)
T KOG2111|consen  170 KPNAPSIINAHDSDIACVALNLQGT-LVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKG  248 (346)
T ss_pred             CcCCceEEEcccCceeEEEEcCCcc-EEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCC
Confidence            53 3467889999999999999986 8889999887 899999999999998854      2378999999999999999


Q ss_pred             eEEEE
Q 004603          702 YLLLH  706 (743)
Q Consensus       702 ~I~vh  706 (743)
                      ++.|.
T Consensus       249 TlHiF  253 (346)
T KOG2111|consen  249 TLHIF  253 (346)
T ss_pred             eEEEE
Confidence            99994

>PRK00178 tolB translocation protein TolB; Provisional

Probab=98.86  E-value=6.4e-07  Score=101.32  Aligned_cols=148  Identities=18%  Similarity=0.146  Sum_probs=104.4

Q ss_pred             EEeeCCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEE-EEeCCC--eEE
Q 004603          549 QLIPASTSKVESCHFSPDGKLLATGGHD---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADR--TVR  622 (743)
Q Consensus       549 ~~l~~H~~~V~siafspdg~~LaSgs~D---g~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~La-Sgs~Dg--~Vr  622 (743)
                      ..+..+...+...+|+|||+.|+..+.+   ..|.+||+.+++... +....+.+...+|+|+|+.|+ +.+.++  .|+
T Consensus       192 ~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy  270 (430)
T PRK00178        192 VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIY  270 (430)
T ss_pred             eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceEE
Confidence            3445667789999999999988776644   358899998876543 333344566789999998876 454455  688


Q ss_pred             EEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCC--cEEEEECCCCeeeEEEe-c--cCceeeecCCCEEEEE
Q 004603          623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFK-V--CNLMPIILKGCFILNS  697 (743)
Q Consensus       623 vWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg--~IrvWDl~tg~~v~~~~-~--~~~i~~s~~g~~l~sg  697 (743)
                      +||+.++.  ...+..+...+....|+|+|..++++...++  .|++||+.+++...... +  .....++|+|.+|+..
T Consensus       271 ~~d~~~~~--~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~  348 (430)
T PRK00178        271 VMDLASRQ--LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVMV  348 (430)
T ss_pred             EEECCCCC--eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEE
Confidence            88998765  3445556666777899999998877765554  57778888776543222 2  1235689999998876


Q ss_pred             ec
Q 004603          698 IF  699 (743)
Q Consensus       698 s~  699 (743)
                      +.
T Consensus       349 ~~  350 (430)
T PRK00178        349 HR  350 (430)
T ss_pred             Ec
Confidence            64

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=98.86  E-value=4.6e-08  Score=107.79  Aligned_cols=157  Identities=15%  Similarity=0.231  Sum_probs=122.8

Q ss_pred             EEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEc------ccCC-----CEEEEEEcCCCCEEEEEe
Q 004603          548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE------EHTQ-----WITDVRFSPSLSRLATSS  616 (743)
Q Consensus       548 ~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~------~H~~-----~V~~vafsp~~~~LaSgs  616 (743)
                      +..+....+.|++|..++...+|++|+.||+|-.||.+....+.++.      .|.+     .|+++.|+.+|-.+++|.
T Consensus       168 L~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGt  247 (703)
T KOG2321|consen  168 LNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGT  247 (703)
T ss_pred             ccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeec
Confidence            33444556789999999988899999999999999998765555543      2333     499999999999999999


Q ss_pred             CCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCC-CcEEEEEeCCCcEEEEECCCCeeeEEEecc---CceeeecCCC
Q 004603          617 ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNGSCAGVFKVC---NLMPIILKGC  692 (743)
Q Consensus       617 ~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g-~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~---~~i~~s~~g~  692 (743)
                      .+|.|.|||+++....+..-.+..-+|..++|.+.+ ...++|+. ...++|||-.+|+....+...   +.+|+.|++.
T Consensus       248 s~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~D-k~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sG  326 (703)
T KOG2321|consen  248 STGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMD-KRILKIWDECTGKPMASIEPTSDLNDFCFVPGSG  326 (703)
T ss_pred             cCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEecc-hHHhhhcccccCCceeeccccCCcCceeeecCCc
Confidence            999999999999776555555566789999997763 23565655 568999999999987776643   4578889999


Q ss_pred             EEEEEecCCeEEE
Q 004603          693 FILNSIFNCYLLL  705 (743)
Q Consensus       693 ~l~sgs~Dg~I~v  705 (743)
                      .++++-.+..+..
T Consensus       327 m~f~Ane~~~m~~  339 (703)
T KOG2321|consen  327 MFFTANESSKMHT  339 (703)
T ss_pred             eEEEecCCCccee
Confidence            9999887765544

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.81  E-value=4.5e-09  Score=114.52  Aligned_cols=163  Identities=15%  Similarity=0.239  Sum_probs=122.2

Q ss_pred             eEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC-------CeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCC
Q 004603          547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES-------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADR  619 (743)
Q Consensus       547 ~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t-------~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg  619 (743)
                      ....+.||+.+|..++--.+.+.+++++.|++|++|.++.       ..+..++..|+..|.++.|-.+.++++++  ||
T Consensus       727 rL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~  804 (1034)
T KOG4190|consen  727 RLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DG  804 (1034)
T ss_pred             eeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cC
Confidence            4567889999999998877888999999999999999863       33667888999999999998887777765  89


Q ss_pred             eEEEEECCCCCeeEEEEe-cCCCCeEEEEEecC--CCcEEEEEeCCCcEEEEECCCCeeeEEEecc---------Cceee
Q 004603          620 TVRVWDTENPDYSLRTFT-GHSTTVMSLDFHPS--KEDLLCSCDNNSEIRYWSINNGSCAGVFKVC---------NLMPI  687 (743)
Q Consensus       620 ~VrvWDl~~~~~~l~~l~-~h~~~V~sl~fsp~--g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~---------~~i~~  687 (743)
                      -|++||.-.++....... ...+.+..+..-++  ...+++.|+...+|+++|.+..+.+..++..         .++++
T Consensus       805 giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaV  884 (1034)
T KOG4190|consen  805 GIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAV  884 (1034)
T ss_pred             cceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEe
Confidence            999999866543211111 12233333433333  3334555688999999999999888777753         33678


Q ss_pred             ecCCCEEEEEecCCeEEEEecccc
Q 004603          688 ILKGCFILNSIFNCYLLLHRIFLN  711 (743)
Q Consensus       688 s~~g~~l~sgs~Dg~I~vh~~~v~  711 (743)
                      .+.|++++.+-.+|.|.+-+....
T Consensus       885 a~~GN~lAa~LSnGci~~LDaR~G  908 (1034)
T KOG4190|consen  885 ADKGNKLAAALSNGCIAILDARNG  908 (1034)
T ss_pred             ccCcchhhHHhcCCcEEEEecCCC
Confidence            899999999999998888665543

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.77  E-value=8.1e-08  Score=100.32  Aligned_cols=153  Identities=19%  Similarity=0.297  Sum_probs=112.4

Q ss_pred             eCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE---EEEEc-----ccCCCEEEEEEcCC-CCEEEEEeCCCeEE
Q 004603          552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV---KSTLE-----EHTQWITDVRFSPS-LSRLATSSADRTVR  622 (743)
Q Consensus       552 ~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~---i~~l~-----~H~~~V~~vafsp~-~~~LaSgs~Dg~Vr  622 (743)
                      .+|+--|.+|.++.|+..++++. |=.|.+|+++-...   +.-++     .-+..|++..|||. .+.|+-++..|+||
T Consensus       161 NaHtyhiNSIS~NsD~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIr  239 (433)
T KOG1354|consen  161 NAHTYHINSISVNSDKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIR  239 (433)
T ss_pred             ccceeEeeeeeecCccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEE
Confidence            36999999999999999998875 77899999863221   11222     23457899999995 77888888999999


Q ss_pred             EEECCCCCeeEE---------------EEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECC-CCeeeEEEeccC---
Q 004603          623 VWDTENPDYSLR---------------TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-NGSCAGVFKVCN---  683 (743)
Q Consensus       623 vWDl~~~~~~l~---------------~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~-tg~~v~~~~~~~---  683 (743)
                      +-|+|....|..               .|.+--+.|.++.|+++|+++| +-+. -+|++||+. ..+++.++..|.   
T Consensus       240 LcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryil-sRDy-ltvk~wD~nme~~pv~t~~vh~~lr  317 (433)
T KOG1354|consen  240 LCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYIL-SRDY-LTVKLWDLNMEAKPVETYPVHEYLR  317 (433)
T ss_pred             EeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEE-Eecc-ceeEEEeccccCCcceEEeehHhHH
Confidence            999985433211               1222335688999999998666 4432 589999994 456777776541   


Q ss_pred             ----------------ceeeecCCCEEEEEecCCeEEEEe
Q 004603          684 ----------------LMPIILKGCFILNSIFNCYLLLHR  707 (743)
Q Consensus       684 ----------------~i~~s~~g~~l~sgs~Dg~I~vh~  707 (743)
                                      .++++-++.++++|+....+++.+
T Consensus       318 ~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~  357 (433)
T KOG1354|consen  318 SKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFN  357 (433)
T ss_pred             HHHHHHhhccchhheeEEEEcCCcceEecccccceEEEec
Confidence                            155667777999999999999976

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.77  E-value=2.9e-08  Score=100.26  Aligned_cols=151  Identities=11%  Similarity=0.226  Sum_probs=98.1

Q ss_pred             cEEEEECCCCeEEEEEcccCCCEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEE
Q 004603          578 KAVLWCTESFTVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLL  656 (743)
Q Consensus       578 ~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~-~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL  656 (743)
                      ..++|+++-.+.+..-.-....|++++-+|. .+.+++|+.||.|-+||.++...++..++.|+..++-|-|||..+.-|
T Consensus       160 ~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~L  239 (319)
T KOG4714|consen  160 NFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHL  239 (319)
T ss_pred             ceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchhe
Confidence            3455665432222111112334999999995 567788889999999999998888889999999999999999987777


Q ss_pred             EEEeCCCcEEEEECCCCeeeEEEeccCceeeecCCCEEEEEecCCeEEEE------ecccceEEEEecCCCCEEEEEeCC
Q 004603          657 CSCDNNSEIRYWSINNGSCAGVFKVCNLMPIILKGCFILNSIFNCYLLLH------RIFLNLLSVSEWCNPDEISTSSWK  730 (743)
Q Consensus       657 ~Sgs~Dg~IrvWDl~tg~~v~~~~~~~~i~~s~~g~~l~sgs~Dg~I~vh------~~~v~~l~v~~~~~~~~laSgs~D  730 (743)
                      ++|++||.+..||..+. .+..-...     +....||-.--....|.+-      ..++..+.+.    +..+++|+.-
T Consensus       240 ft~sedGslw~wdas~~-~l~i~~~~-----s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV~----g~~lVcgtd~  309 (319)
T KOG4714|consen  240 FTCSEDGSLWHWDASTT-FLSISNQA-----SVISSWLSGDPVKSRIEITSLLPSRSLSINSFDVL----GPCLVCGTDA  309 (319)
T ss_pred             eEecCCCcEEEEcCCCc-eEEecCcc-----ccccccccCCcccceEeeeccccccceeeeeeecc----CceEEecccc
Confidence            89999999999998752 22110000     0111111111111223331      2233444443    5689999999


Q ss_pred             CeEEEeCC
Q 004603          731 DSCCSHRE  738 (743)
Q Consensus       731 G~V~iWd~  738 (743)
                      +.|++++.
T Consensus       310 eaIyl~~~  317 (319)
T KOG4714|consen  310 EAIYLTRH  317 (319)
T ss_pred             ceEEEecc
Confidence            99998874

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=98.76  E-value=9.3e-07  Score=99.19  Aligned_cols=145  Identities=17%  Similarity=0.159  Sum_probs=98.5

Q ss_pred             CCCCCeEEEEEcCCCCEEE-EEeCCC--cEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeC-CC--eEEEEEC
Q 004603          553 ASTSKVESCHFSPDGKLLA-TGGHDK--KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DR--TVRVWDT  626 (743)
Q Consensus       553 ~H~~~V~siafspdg~~La-Sgs~Dg--~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~-Dg--~VrvWDl  626 (743)
                      .+.+.+.+++|+|||+.|+ +.+.++  .|++||+.++... .+..+...+...+|+|+++.|+.++. ++  .|.+||+
T Consensus       231 ~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~  309 (417)
T TIGR02800       231 SFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDA  309 (417)
T ss_pred             cCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEEC
Confidence            3455677899999998765 444444  5888898876543 44455555667899999998876654 33  5778888


Q ss_pred             CCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCC---cEEEEECCCCeeeEEEec--cCceeeecCCCEEEEEecCC
Q 004603          627 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS---EIRYWSINNGSCAGVFKV--CNLMPIILKGCFILNSIFNC  701 (743)
Q Consensus       627 ~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg---~IrvWDl~tg~~v~~~~~--~~~i~~s~~g~~l~sgs~Dg  701 (743)
                      .++.  ...+..+...+..+.|+|+|..++++.. ++   .|.+||+.++........  .....++++|.+|+..+.++
T Consensus       310 ~~~~--~~~l~~~~~~~~~~~~spdg~~i~~~~~-~~~~~~i~~~d~~~~~~~~l~~~~~~~~p~~spdg~~l~~~~~~~  386 (417)
T TIGR02800       310 DGGE--VRRLTFRGGYNASPSWSPDGDLIAFVHR-EGGGFNIAVMDLDGGGERVLTDTGLDESPSFAPNGRMILYATTRG  386 (417)
T ss_pred             CCCC--EEEeecCCCCccCeEECCCCCEEEEEEc-cCCceEEEEEeCCCCCeEEccCCCCCCCceECCCCCEEEEEEeCC
Confidence            7654  3344445566788999999986665544 43   788999987654322211  23357899999988877654

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.76  E-value=1.3e-06  Score=97.27  Aligned_cols=137  Identities=16%  Similarity=0.210  Sum_probs=111.3

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEEc--ccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCe
Q 004603          566 DGKLLATGGHDKKAVLWCTESFTVKSTLE--EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTV  643 (743)
Q Consensus       566 dg~~LaSgs~Dg~V~IWd~~t~~~i~~l~--~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V  643 (743)
                      +...++-|...|.|.+|++..++....+.  .|.+.|.++.++-+...|.|++.|+.|.+|+...... ++.+.+-...+
T Consensus        69 ~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~-~~~~~~~~~~~  147 (541)
T KOG4547|consen   69 DTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVI-IRIWKEQKPLV  147 (541)
T ss_pred             CceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEeccccee-eeeeccCCCcc
Confidence            34468888889999999999998887775  6899999999998888999999999999999988554 78888888899


Q ss_pred             EEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEeccCc----eeeecC-----CCEEEEEe-cCCeEEEE
Q 004603          644 MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNL----MPIILK-----GCFILNSI-FNCYLLLH  706 (743)
Q Consensus       644 ~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~~~----i~~s~~-----g~~l~sgs-~Dg~I~vh  706 (743)
                      .+++.+||+. ++++++  +.|++||+++++.+..|.+|..    +.|...     |.|++++. .+..+.+|
T Consensus       148 ~sl~is~D~~-~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w  217 (541)
T KOG4547|consen  148 SSLCISPDGK-ILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVW  217 (541)
T ss_pred             ceEEEcCCCC-EEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEE
Confidence            9999999977 555666  6899999999999999999854    344443     67766653 34444444

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=98.75  E-value=9.8e-08  Score=98.02  Aligned_cols=142  Identities=23%  Similarity=0.229  Sum_probs=104.7

Q ss_pred             eeeEEEeeCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCC-CeEEEE-EcccCCCEEEEEEcC-CCCEEEEEeCCCe
Q 004603          545 FTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTES-FTVKST-LEEHTQWITDVRFSP-SLSRLATSSADRT  620 (743)
Q Consensus       545 ~~~~~~l~~H~~~V~siafsp-dg~~LaSgs~Dg~V~IWd~~t-~~~i~~-l~~H~~~V~~vafsp-~~~~LaSgs~Dg~  620 (743)
                      ...+...++|.-.+..++|+. +.+++++|++|+.+..||++. ++.+.. .+.|+..|.+|.-+| .+.+|+||+.|..
T Consensus       155 le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~  234 (339)
T KOG0280|consen  155 LEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDEC  234 (339)
T ss_pred             eeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccc
Confidence            344557889999999999986 667999999999999999983 333332 456899999998877 5889999999999


Q ss_pred             EEEEECCCCCeeEEEEecCCCCeEEEEEecCCCc-EEEEEeCCCcEEEEECCCCe-----eeEEEeccCceeee
Q 004603          621 VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED-LLCSCDNNSEIRYWSINNGS-----CAGVFKVCNLMPII  688 (743)
Q Consensus       621 VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~-lL~Sgs~Dg~IrvWDl~tg~-----~v~~~~~~~~i~~s  688 (743)
                      |++||.|+-..++..-. -.+.|+.++++|...+ +|++|-..| .+|-++..+.     ....++.|..+++-
T Consensus       235 i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~~e~~~~~~s~~~hdSl~YG  306 (339)
T KOG0280|consen  235 IRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKVLEFQIVLPSDKIHDSLCYG  306 (339)
T ss_pred             eeeeehhcccCccccCc-cccceEEEEecchhhhHHHHHHHhcC-ceEEEecccccchheeeeccccccceeec
Confidence            99999997665554332 3478999999997543 455666555 7787776543     22334455554443

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.75  E-value=8.5e-07  Score=92.17  Aligned_cols=82  Identities=26%  Similarity=0.300  Sum_probs=74.0

Q ss_pred             EEEeeCCCCCeEEEEEcCCCCEEEEEeCCCc-EEEEECCCCeEEEEEcc--cCCCEEEEEEcCCCCEEEEEeCCCeEEEE
Q 004603          548 FQLIPASTSKVESCHFSPDGKLLATGGHDKK-AVLWCTESFTVKSTLEE--HTQWITDVRFSPSLSRLATSSADRTVRVW  624 (743)
Q Consensus       548 ~~~l~~H~~~V~siafspdg~~LaSgs~Dg~-V~IWd~~t~~~i~~l~~--H~~~V~~vafsp~~~~LaSgs~Dg~VrvW  624 (743)
                      ...+.+|.+.|.|++.+-+|.+|||||..|+ |||||..++..+..++.  ..+.|+|++|+|+..+|+++|..|+|+||
T Consensus       174 p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF  253 (346)
T KOG2111|consen  174 PSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIF  253 (346)
T ss_pred             ceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEE
Confidence            3678899999999999999999999999998 79999999999888863  34679999999999999999999999999


Q ss_pred             ECCCC
Q 004603          625 DTENP  629 (743)
Q Consensus       625 Dl~~~  629 (743)
                      .++..
T Consensus       254 ~l~~~  258 (346)
T KOG2111|consen  254 SLRDT  258 (346)
T ss_pred             EeecC
Confidence            98753

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.74  E-value=2.5e-05  Score=85.88  Aligned_cols=194  Identities=13%  Similarity=0.130  Sum_probs=126.8

Q ss_pred             eeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEECCC-CeEEEE---Ec----------ccCCCEEEEEEcCC
Q 004603          544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGH-DKKAVLWCTES-FTVKST---LE----------EHTQWITDVRFSPS  608 (743)
Q Consensus       544 ~~~~~~~l~~H~~~V~siafspdg~~LaSgs~-Dg~V~IWd~~t-~~~i~~---l~----------~H~~~V~~vafsp~  608 (743)
                      .++.+............|+++|++++|+++.. ++.|.++++.. +.....   +.          .......++.|+|+
T Consensus        75 ~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pd  154 (345)
T PF10282_consen   75 TLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPD  154 (345)
T ss_dssp             EEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TT
T ss_pred             eeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCC
Confidence            44555555544445678999999999999985 88999999986 443322   21          12345789999999


Q ss_pred             CCEEEEEeC-CCeEEEEECCCCCeeE---EEE-ecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECC--CCee--eEEE
Q 004603          609 LSRLATSSA-DRTVRVWDTENPDYSL---RTF-TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN--NGSC--AGVF  679 (743)
Q Consensus       609 ~~~LaSgs~-Dg~VrvWDl~~~~~~l---~~l-~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~--tg~~--v~~~  679 (743)
                      +++++++.. ...|++|++......+   ..+ .........+.|+|+++++++.+-.+++|.+|++.  ++..  +..+
T Consensus       155 g~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~  234 (345)
T PF10282_consen  155 GRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTI  234 (345)
T ss_dssp             SSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEE
T ss_pred             CCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEe
Confidence            998877653 5689999997755212   222 23446688999999999999999999999999998  4432  2222


Q ss_pred             ec----------cCceeeecCCCEEEEEe-cCCeEEEEecc-----c-----------ceEEEEecCCCCEEEEEe-CCC
Q 004603          680 KV----------CNLMPIILKGCFILNSI-FNCYLLLHRIF-----L-----------NLLSVSEWCNPDEISTSS-WKD  731 (743)
Q Consensus       680 ~~----------~~~i~~s~~g~~l~sgs-~Dg~I~vh~~~-----v-----------~~l~v~~~~~~~~laSgs-~DG  731 (743)
                      ..          ...+.++|+|++|++.. ..+.|.+.+..     .           ....+..+.++.+|+++. .++
T Consensus       235 ~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~  314 (345)
T PF10282_consen  235 STLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSN  314 (345)
T ss_dssp             ESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTT
T ss_pred             eeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCC
Confidence            21          12377999999988865 45566665541     1           122233344567777666 666


Q ss_pred             eEEEeC
Q 004603          732 SCCSHR  737 (743)
Q Consensus       732 ~V~iWd  737 (743)
                      .|.+|+
T Consensus       315 ~v~vf~  320 (345)
T PF10282_consen  315 TVSVFD  320 (345)
T ss_dssp             EEEEEE
T ss_pred             eEEEEE
Confidence            888874

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.73  E-value=2.4e-06  Score=94.62  Aligned_cols=178  Identities=17%  Similarity=0.137  Sum_probs=117.5

Q ss_pred             EEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe
Q 004603          509 VDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT  588 (743)
Q Consensus       509 l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~  588 (743)
                      +++-..++.|.+.+                   +.+.+.+..+......-..+.|+|||+++++++.|+.|.++|+.+.+
T Consensus         9 ~V~~~~~~~v~viD-------------------~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~   69 (369)
T PF02239_consen    9 YVVERGSGSVAVID-------------------GATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGK   69 (369)
T ss_dssp             EEEEGGGTEEEEEE-------------------TTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSS
T ss_pred             EEEecCCCEEEEEE-------------------CCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCccc
Confidence            35555678888873                   33445667776554434457899999999999999999999999999


Q ss_pred             EEEEEcccCCCEEEEEEcCCCCEEEEEe-CCCeEEEEECCCCCeeEEEEec-------CCCCeEEEEEecCCCcEEEEEe
Q 004603          589 VKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENPDYSLRTFTG-------HSTTVMSLDFHPSKEDLLCSCD  660 (743)
Q Consensus       589 ~i~~l~~H~~~V~~vafsp~~~~LaSgs-~Dg~VrvWDl~~~~~~l~~l~~-------h~~~V~sl~fsp~g~~lL~Sgs  660 (743)
                      .+.++.... ...++++++||+++++++ .++.|.++|.++.+. +..+..       ..+.+.+|..+|..+.++++--
T Consensus        70 ~v~~i~~G~-~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~-v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lk  147 (369)
T PF02239_consen   70 VVATIKVGG-NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEP-VKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLK  147 (369)
T ss_dssp             EEEEEE-SS-EEEEEEE--TTTEEEEEEEETTEEEEEETTT--E-EEEEE--EE-TTTS---EEEEEE-SSSSEEEEEET
T ss_pred             EEEEEecCC-CcceEEEcCCCCEEEEEecCCCceeEeccccccc-eeecccccccccccCCCceeEEecCCCCEEEEEEc
Confidence            999887644 467899999999988776 599999999998664 554432       2456888888888776666666


Q ss_pred             CCCcEEEEECCCCeee--EEEecc---CceeeecCCCEEEEEe-cCCeEEEEe
Q 004603          661 NNSEIRYWSINNGSCA--GVFKVC---NLMPIILKGCFILNSI-FNCYLLLHR  707 (743)
Q Consensus       661 ~Dg~IrvWDl~tg~~v--~~~~~~---~~i~~s~~g~~l~sgs-~Dg~I~vh~  707 (743)
                      +.+.|.+-|....+.+  ..+...   ....++++++|++.+. .+..|.+.+
T Consensus       148 d~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD  200 (369)
T PF02239_consen  148 DTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVID  200 (369)
T ss_dssp             TTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEE
T ss_pred             cCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEe
Confidence            6688888887765433  233322   2367889999987753 344555544

...

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.72  E-value=9.3e-06  Score=89.99  Aligned_cols=155  Identities=14%  Similarity=0.160  Sum_probs=108.5

Q ss_pred             CCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEC
Q 004603          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGG-HDKKAVLWCT  584 (743)
Q Consensus       506 ~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs-~Dg~V~IWd~  584 (743)
                      ++++...+.|+.|.+++....                   +.+..++.... ..++++++||+++++++ .++.|.|+|.
T Consensus        48 gr~~yv~~rdg~vsviD~~~~-------------------~~v~~i~~G~~-~~~i~~s~DG~~~~v~n~~~~~v~v~D~  107 (369)
T PF02239_consen   48 GRYLYVANRDGTVSVIDLATG-------------------KVVATIKVGGN-PRGIAVSPDGKYVYVANYEPGTVSVIDA  107 (369)
T ss_dssp             SSEEEEEETTSEEEEEETTSS-------------------SEEEEEE-SSE-EEEEEE--TTTEEEEEEEETTEEEEEET
T ss_pred             CCEEEEEcCCCeEEEEECCcc-------------------cEEEEEecCCC-cceEEEcCCCCEEEEEecCCCceeEecc
Confidence            367777788999999955433                   45555555443 67899999999988776 5889999999


Q ss_pred             CCCeEEEEEccc-------CCCEEEEEEcCCCCEEEEEeC-CCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEE
Q 004603          585 ESFTVKSTLEEH-------TQWITDVRFSPSLSRLATSSA-DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLL  656 (743)
Q Consensus       585 ~t~~~i~~l~~H-------~~~V~~vafsp~~~~LaSgs~-Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL  656 (743)
                      ++.+.+..+...       ..++..|..+|....++..-. -+.|.+.|......................|+|++++++
T Consensus       108 ~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~  187 (369)
T PF02239_consen  108 ETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFL  187 (369)
T ss_dssp             TT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEE
T ss_pred             ccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceee
Confidence            999998877532       346778888888775655555 588888898776544444444566788999999999988


Q ss_pred             EEEeCCCcEEEEECCCCeeeEEEe
Q 004603          657 CSCDNNSEIRYWSINNGSCAGVFK  680 (743)
Q Consensus       657 ~Sgs~Dg~IrvWDl~tg~~v~~~~  680 (743)
                      ++...+..|-++|..+++.+..+.
T Consensus       188 va~~~sn~i~viD~~~~k~v~~i~  211 (369)
T PF02239_consen  188 VAANGSNKIAVIDTKTGKLVALID  211 (369)
T ss_dssp             EEEGGGTEEEEEETTTTEEEEEEE
T ss_pred             ecccccceeEEEeeccceEEEEee
Confidence            888888899999999998877664

...

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.71  E-value=1.4e-06  Score=99.23  Aligned_cols=153  Identities=20%  Similarity=0.208  Sum_probs=103.6

Q ss_pred             EeeCCCCCeEEEEEcCCCCEEEEEeCC-C--cEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEE-EeCCCe--EEE
Q 004603          550 LIPASTSKVESCHFSPDGKLLATGGHD-K--KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT-SSADRT--VRV  623 (743)
Q Consensus       550 ~l~~H~~~V~siafspdg~~LaSgs~D-g--~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaS-gs~Dg~--Vrv  623 (743)
                      .+..+...+.+..|+|||+.|+..+.+ +  .|.+||+.+++... +....+.....+|+|+++.|+. .+.++.  |.+
T Consensus       212 ~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~  290 (448)
T PRK04792        212 MLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYV  290 (448)
T ss_pred             EeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEE
Confidence            344556678999999999988876543 3  58888988776533 2222334457899999997754 566665  777


Q ss_pred             EECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCc--EEEEECCCCeeeEE-Eecc--CceeeecCCCEEEEEe
Q 004603          624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE--IRYWSINNGSCAGV-FKVC--NLMPIILKGCFILNSI  698 (743)
Q Consensus       624 WDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~--IrvWDl~tg~~v~~-~~~~--~~i~~s~~g~~l~sgs  698 (743)
                      ||+.++.  +..+..+...+...+|+|+|..+++++..++.  |.++|+.+++.... +.+.  ....++|+|.+|+..+
T Consensus       291 ~dl~tg~--~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~  368 (448)
T PRK04792        291 VDIATKA--LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVN  368 (448)
T ss_pred             EECCCCC--eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEE
Confidence            7887654  34555565667789999999988877765554  66678877765432 2222  2357899999987765


Q ss_pred             c-CCeEEE
Q 004603          699 F-NCYLLL  705 (743)
Q Consensus       699 ~-Dg~I~v  705 (743)
                      . ++...+
T Consensus       369 ~~~g~~~I  376 (448)
T PRK04792        369 RTNGKFNI  376 (448)
T ss_pred             ecCCceEE
Confidence            4 343344

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=98.70  E-value=7.4e-07  Score=98.52  Aligned_cols=174  Identities=12%  Similarity=0.058  Sum_probs=118.7

Q ss_pred             EEEEcC-CCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEe-
Q 004603          560 SCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT-  637 (743)
Q Consensus       560 siafsp-dg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~-  637 (743)
                      +++++. ...+++. +....|+-++++.|..+.-|....+.|++|..++...+|++|+.||.|-+||.++... +.++. 
T Consensus       138 Dm~y~~~scDly~~-gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksr-v~~l~~  215 (703)
T KOG2321|consen  138 DMKYHKPSCDLYLV-GSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSR-VGTLDA  215 (703)
T ss_pred             cccccCCCccEEEe-ecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhh-heeeec
Confidence            455553 3444444 4455688889999999999988889999999999988999999999999999998654 23222 


Q ss_pred             -----cCCC-----CeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEeccCc-----eeeecC-CCEEEEEecCC
Q 004603          638 -----GHST-----TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNL-----MPIILK-GCFILNSIFNC  701 (743)
Q Consensus       638 -----~h~~-----~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~~~-----i~~s~~-g~~l~sgs~Dg  701 (743)
                           .|..     .|+++.|..+|- -++.|..+|.|.|||+++.+++..-.....     +.|.+. ..-.+......
T Consensus       216 ~~~v~s~pg~~~~~svTal~F~d~gL-~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~  294 (703)
T KOG2321|consen  216 ASSVNSHPGGDAAPSVTALKFRDDGL-HVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMDKR  294 (703)
T ss_pred             ccccCCCccccccCcceEEEecCCce-eEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEecchH
Confidence                 2222     499999998754 567899999999999999887654443222     223222 22233333445


Q ss_pred             eEEEEecccc-----------eEEEEecCCCCEEEEEeCCCeEEEe
Q 004603          702 YLLLHRIFLN-----------LLSVSEWCNPDEISTSSWKDSCCSH  736 (743)
Q Consensus       702 ~I~vh~~~v~-----------~l~v~~~~~~~~laSgs~DG~V~iW  736 (743)
                      .++||+....           .-.+|..++.++++++-.++.+..|
T Consensus       295 ~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~~m~~y  340 (703)
T KOG2321|consen  295 ILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANESSKMHTY  340 (703)
T ss_pred             HhhhcccccCCceeeccccCCcCceeeecCCceEEEecCCCcceeE
Confidence            6777764321           2223444557888888888876655

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.70  E-value=1.4e-06  Score=98.53  Aligned_cols=144  Identities=18%  Similarity=0.121  Sum_probs=92.8

Q ss_pred             CCeEEEEEcCCCCEEEEEeC-----CCcEEEEECCC---CeEEEEEcccCCCEEEEEEcCCCCEEEEEe-CCCeEEEEE-
Q 004603          556 SKVESCHFSPDGKLLATGGH-----DKKAVLWCTES---FTVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWD-  625 (743)
Q Consensus       556 ~~V~siafspdg~~LaSgs~-----Dg~V~IWd~~t---~~~i~~l~~H~~~V~~vafsp~~~~LaSgs-~Dg~VrvWD-  625 (743)
                      +.....+|+|||+.|+..+.     |..+.+|++..   ++......++...+...+|+|||+.|+..+ .+|...+|. 
T Consensus       231 g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~  310 (428)
T PRK01029        231 GNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIM  310 (428)
T ss_pred             CCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEE
Confidence            33556899999998876553     22344577664   233333433334456789999999877655 467655554 


Q ss_pred             -CCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCC--CcEEEEECCCCeeeEEEec---cCceeeecCCCEEEEEec
Q 004603          626 -TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN--SEIRYWSINNGSCAGVFKV---CNLMPIILKGCFILNSIF  699 (743)
Q Consensus       626 -l~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~D--g~IrvWDl~tg~~v~~~~~---~~~i~~s~~g~~l~sgs~  699 (743)
                       +.........+..+...+....|+|+|+.+++++..+  ..|.+||+.++++......   .....++|+|.+|+....
T Consensus       311 ~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~  390 (428)
T PRK01029        311 QIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAG  390 (428)
T ss_pred             ECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEEC
Confidence             4322222344554556678899999999777666544  3699999998876543322   234678999998875443

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.70  E-value=3.8e-07  Score=101.42  Aligned_cols=146  Identities=21%  Similarity=0.247  Sum_probs=122.6

Q ss_pred             CEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004603          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES  586 (743)
Q Consensus       507 ~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t  586 (743)
                      ..++-|..-|.|.++....+                 ..+....-..|-+.|.++.++.+-..|.+++.|+.|..|+...
T Consensus        71 ~~lvlgt~~g~v~~ys~~~g-----------------~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~  133 (541)
T KOG4547|consen   71 SMLVLGTPQGSVLLYSVAGG-----------------EITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKE  133 (541)
T ss_pred             eEEEeecCCccEEEEEecCC-----------------eEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEeccc
Confidence            56677777777777744333                 2222333357999999999999999999999999999999999


Q ss_pred             CeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecC-----CCcEEEEEeC
Q 004603          587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS-----KEDLLCSCDN  661 (743)
Q Consensus       587 ~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~-----g~~lL~Sgs~  661 (743)
                      +..++.+.+....+.+++++||+..+++++  +.|++||+.+++. +.+|.||.+.|.++.|.-.     |.++|.+...
T Consensus       134 ~~~~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kev-v~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~  210 (541)
T KOG4547|consen  134 KVIIRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEV-VITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAA  210 (541)
T ss_pred             ceeeeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceE-EEEecCCCcceEEEEEEEeccccccceeeecccc
Confidence            999999999999999999999999999885  7899999999665 9999999999999999877     7788877777


Q ss_pred             CCcEEEEECCC
Q 004603          662 NSEIRYWSINN  672 (743)
Q Consensus       662 Dg~IrvWDl~t  672 (743)
                      +..|.+|-++.
T Consensus       211 ~r~i~~w~v~~  221 (541)
T KOG4547|consen  211 ERGITVWVVEK  221 (541)
T ss_pred             ccceeEEEEEc
Confidence            88899997764

>PRK00178 tolB translocation protein TolB; Provisional

Probab=98.66  E-value=2.6e-06  Score=96.41  Aligned_cols=142  Identities=13%  Similarity=0.102  Sum_probs=95.0

Q ss_pred             CCeEEEEEcCCCCEEE-EEeCCC--cEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeC-CC--eEEEEECCCC
Q 004603          556 SKVESCHFSPDGKLLA-TGGHDK--KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DR--TVRVWDTENP  629 (743)
Q Consensus       556 ~~V~siafspdg~~La-Sgs~Dg--~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~-Dg--~VrvWDl~~~  629 (743)
                      +.+.+.+|+|||+.|+ +.+.++  .|.+||+.+++.. .+..+...+....|+|+++.|+..+. ++  .|.++|+.++
T Consensus       243 g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g  321 (430)
T PRK00178        243 GLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGG  321 (430)
T ss_pred             CCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence            3455789999999776 444555  5888899887654 45556666777899999988765553 33  5777788766


Q ss_pred             CeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCC--cEEEEECCCCeeeEEEec--cCceeeecCCCEEEEEecC
Q 004603          630 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKV--CNLMPIILKGCFILNSIFN  700 (743)
Q Consensus       630 ~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg--~IrvWDl~tg~~v~~~~~--~~~i~~s~~g~~l~sgs~D  700 (743)
                      .....++.+  .......|+|+|..++++...++  .|.+||+.+++.......  .....++|+|.+++..+.+
T Consensus       322 ~~~~lt~~~--~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~~~~p~~spdg~~i~~~~~~  394 (430)
T PRK00178        322 RAERVTFVG--NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDTSLDESPSVAPNGTMLIYATRQ  394 (430)
T ss_pred             CEEEeecCC--CCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccCCCCCCCceECCCCCEEEEEEec
Confidence            532222222  23446789999997776665444  588899988765332221  2335789999998876654

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.66  E-value=8.8e-08  Score=107.94  Aligned_cols=127  Identities=20%  Similarity=0.319  Sum_probs=104.6

Q ss_pred             eEEEeeCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCC-eEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEE
Q 004603          547 EFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW  624 (743)
Q Consensus       547 ~~~~l~~H~~~V~siafsp-dg~~LaSgs~Dg~V~IWd~~t~-~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvW  624 (743)
                      ....+.+|+..|+.+-|+| ....+++++.|-.|..||+++. .++..+..-....+.|+|+-....+...+....|+||
T Consensus       106 Ief~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vw  185 (1081)
T KOG0309|consen  106 IEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVW  185 (1081)
T ss_pred             eEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEE
Confidence            3345679999999999999 4568999999999999999874 3455555555567889998854555555678889999


Q ss_pred             ECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCC
Q 004603          625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG  673 (743)
Q Consensus       625 Dl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg  673 (743)
                      |++.+..++.++++|...|++++|..-....+.+++.|++|++||....
T Consensus       186 d~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kS  234 (1081)
T KOG0309|consen  186 DLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKS  234 (1081)
T ss_pred             eccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccc
Confidence            9999999999999999999999998776666779999999999998754

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.57  E-value=3.4e-05  Score=96.17  Aligned_cols=180  Identities=12%  Similarity=0.058  Sum_probs=123.7

Q ss_pred             CCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCeEEEEEccc-----------------CCCEEEEEEcC-CCCEEEEEe
Q 004603          556 SKVESCHFSPDGKLLATGG-HDKKAVLWCTESFTVKSTLEEH-----------------TQWITDVRFSP-SLSRLATSS  616 (743)
Q Consensus       556 ~~V~siafspdg~~LaSgs-~Dg~V~IWd~~t~~~i~~l~~H-----------------~~~V~~vafsp-~~~~LaSgs  616 (743)
                      .....|+++++++.|+++. ..+.|+++|+.++. +.++.+-                 -..-+.|+|+| ++.++++..
T Consensus       624 ~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~  702 (1057)
T PLN02919        624 NRPQGLAYNAKKNLLYVADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMA  702 (1057)
T ss_pred             CCCcEEEEeCCCCEEEEEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEEC
Confidence            3467899999888666654 45679999987754 3444220                 01236799999 566677777


Q ss_pred             CCCeEEEEECCCCCeeEEEEecC---------------CCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEE--
Q 004603          617 ADRTVRVWDTENPDYSLRTFTGH---------------STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF--  679 (743)
Q Consensus       617 ~Dg~VrvWDl~~~~~~l~~l~~h---------------~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~--  679 (743)
                      .++.|++||..++..  .++.+.               -.....|+|+|++..++++-+.++.|++||+.++......  
T Consensus       703 ~~~~I~v~d~~~g~v--~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg  780 (1057)
T PLN02919        703 GQHQIWEYNISDGVT--RVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGG  780 (1057)
T ss_pred             CCCeEEEEECCCCeE--EEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEec
Confidence            899999999987543  233211               1235679999999888888888899999999876532111  


Q ss_pred             -----------------------eccCceeeecCCCEEEEEecCCeEEEEecccceE-----------------------
Q 004603          680 -----------------------KVCNLMPIILKGCFILNSIFNCYLLLHRIFLNLL-----------------------  713 (743)
Q Consensus       680 -----------------------~~~~~i~~s~~g~~l~sgs~Dg~I~vh~~~v~~l-----------------------  713 (743)
                                             .....++++++|..+++-+.+++|++++.....+                       
T Consensus       781 ~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~  860 (1057)
T PLN02919        781 DPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSE  860 (1057)
T ss_pred             ccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCC
Confidence                                   1123577889999888889999999987532211                       


Q ss_pred             --EEEecCCCCEEEEEeCCCeEEEeCC
Q 004603          714 --SVSEWCNPDEISTSSWKDSCCSHRE  738 (743)
Q Consensus       714 --~v~~~~~~~~laSgs~DG~V~iWd~  738 (743)
                        .+..+.++..+++-+.+++|++||-
T Consensus       861 P~GIavd~dG~lyVaDt~Nn~Irvid~  887 (1057)
T PLN02919        861 PAGLALGENGRLFVADTNNSLIRYLDL  887 (1057)
T ss_pred             ceEEEEeCCCCEEEEECCCCEEEEEEC
Confidence              1233334567777788899999975

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.56  E-value=5.2e-06  Score=94.57  Aligned_cols=140  Identities=17%  Similarity=0.185  Sum_probs=91.5

Q ss_pred             eEEEEEcCCCCEEEE-EeCCCc--EEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeC-CC--eEEEEECCCCCe
Q 004603          558 VESCHFSPDGKLLAT-GGHDKK--AVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DR--TVRVWDTENPDY  631 (743)
Q Consensus       558 V~siafspdg~~LaS-gs~Dg~--V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~-Dg--~VrvWDl~~~~~  631 (743)
                      ....+|+|||+.|+. .+.++.  |.+||+.+++.. .+..+...+...+|+|+++.|+..+. ++  .|.++|+.++..
T Consensus       264 ~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~-~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~  342 (448)
T PRK04792        264 NGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALT-RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKV  342 (448)
T ss_pred             cCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence            446899999997764 566665  777788876653 45556666778899999998765553 44  466667776553


Q ss_pred             eEEEEecCCCCeEEEEEecCCCcEEEEEeCCCc--EEEEECCCCeeeEEEec--cCceeeecCCCEEEEEecC
Q 004603          632 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE--IRYWSINNGSCAGVFKV--CNLMPIILKGCFILNSIFN  700 (743)
Q Consensus       632 ~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~--IrvWDl~tg~~v~~~~~--~~~i~~s~~g~~l~sgs~D  700 (743)
                      ...++.+  ......+|+|+|+.++++...++.  |.++|+.+++.......  .....++|+|.+|+..+.+
T Consensus       343 ~~Lt~~g--~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~~~~d~~ps~spdG~~I~~~~~~  413 (448)
T PRK04792        343 SRLTFEG--EQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVLTSTRLDESPSVAPNGTMVIYSTTY  413 (448)
T ss_pred             EEEecCC--CCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEEccCCCCCCCceECCCCCEEEEEEec
Confidence            2222332  234567999999987776665554  55578887764322211  1234689999988766544

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.53  E-value=1.1e-06  Score=90.78  Aligned_cols=215  Identities=15%  Similarity=0.253  Sum_probs=142.0

Q ss_pred             CEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCC------------CCCeEEEEEcCCC--CEEEE
Q 004603          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAS------------TSKVESCHFSPDG--KLLAT  572 (743)
Q Consensus       507 ~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H------------~~~V~siafspdg--~~LaS  572 (743)
                      .++++|...|.|.+|.-....              +-..+.+..+.+|            ..+|..|.|..++  ..++.
T Consensus        39 ~YlatGDkgGRVvlfer~~s~--------------~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl  104 (460)
T COG5170          39 LYLATGDKGGRVVLFEREKSY--------------GCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL  104 (460)
T ss_pred             ceEeecCCCceEEEeeccccc--------------ccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence            799999999999999332221              1112222333333            2358888887643  35667


Q ss_pred             EeCCCcEEEEECCCCe------------------------------------------EEEEE-cccCCCEEEEEEcCCC
Q 004603          573 GGHDKKAVLWCTESFT------------------------------------------VKSTL-EEHTQWITDVRFSPSL  609 (743)
Q Consensus       573 gs~Dg~V~IWd~~t~~------------------------------------------~i~~l-~~H~~~V~~vafsp~~  609 (743)
                      .+.|++|++|.+....                                          +.+.. ..|...|.++.|+.|.
T Consensus       105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~  184 (460)
T COG5170         105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK  184 (460)
T ss_pred             ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence            7789999999764210                                          00111 3577788999999987


Q ss_pred             CEEEEEeCCCeEEEEECCCCCee--EEEEecCC-----CCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCe-ee-----
Q 004603          610 SRLATSSADRTVRVWDTENPDYS--LRTFTGHS-----TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CA-----  676 (743)
Q Consensus       610 ~~LaSgs~Dg~VrvWDl~~~~~~--l~~l~~h~-----~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~-~v-----  676 (743)
                      ..++++ .|-.|.+|++.....+  +..++.|.     ..|++..|||....+|...+..|+|++-|+|... |.     
T Consensus       185 et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~kl  263 (460)
T COG5170         185 ETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKL  263 (460)
T ss_pred             heeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhh
Confidence            777776 4889999998754433  33444454     4588999999877777777779999999999432 11     


Q ss_pred             E--EEec------------cCceeeecCCCEEEEEecCCeEEEEeccc----------------------------ceEE
Q 004603          677 G--VFKV------------CNLMPIILKGCFILNSIFNCYLLLHRIFL----------------------------NLLS  714 (743)
Q Consensus       677 ~--~~~~------------~~~i~~s~~g~~l~sgs~Dg~I~vh~~~v----------------------------~~l~  714 (743)
                      .  .+.+            ...+.|++.|+|+++...- +|++|+...                            ..+.
T Consensus       264 fe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyl-tvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFe  342 (460)
T COG5170         264 FELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYL-TVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFE  342 (460)
T ss_pred             hhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccc-eEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEE
Confidence            0  0111            1336788999999988765 788887543                            1234


Q ss_pred             EEecCCCCEEEEEeCCCeEEEeC
Q 004603          715 VSEWCNPDEISTSSWKDSCCSHR  737 (743)
Q Consensus       715 v~~~~~~~~laSgs~DG~V~iWd  737 (743)
                      +.+.++...+.+|++.....+|-
T Consensus       343 isfSgd~~~v~sgsy~NNfgiyp  365 (460)
T COG5170         343 ISFSGDDKHVLSGSYSNNFGIYP  365 (460)
T ss_pred             EEecCCcccccccccccceeeec
Confidence            45555667788888877766664

>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions

Probab=98.51  E-value=1e-07  Score=64.00  Aligned_cols=27  Identities=41%  Similarity=0.685  Sum_probs=24.5

Q ss_pred             HHHHHHHHHHhhcCChHHHHHHHHhcC
Q 004603           10 KMLDVYIYDYLLKRKLHASAKAFQTEG   36 (743)
Q Consensus        10 ~~l~~yiy~yl~k~~~~~~A~~~~~e~   36 (743)
                      +.||.+|||||+++||.+||++|.+|+
T Consensus         1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea   27 (27)
T PF08513_consen    1 EELNQLIYDYLVENGYKETAKAFAKEA   27 (27)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence            579999999999999999999999985

The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=98.49  E-value=1.2e-06  Score=91.15  Aligned_cols=178  Identities=15%  Similarity=0.134  Sum_probs=121.7

Q ss_pred             CCeEEEEEcCCCCEEE-EEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCCeeE
Q 004603          556 SKVESCHFSPDGKLLA-TGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRVWDTENPDYSL  633 (743)
Q Consensus       556 ~~V~siafspdg~~La-Sgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~-~LaSgs~Dg~VrvWDl~~~~~~l  633 (743)
                      ++|.-|.|..|..+++ .+..|+.|.+|++...+--..+.+..+.+.+++|+|+|+ .|.+...|-.|.||.+.+.+.  
T Consensus        49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~--  126 (447)
T KOG4497|consen   49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKG--  126 (447)
T ss_pred             HHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEecccee--
Confidence            4577788888776554 456788999999998888888888889999999999995 456777899999999998654  


Q ss_pred             EEEecCCCCeEEEEEecCCCcEEEEEeCCCc--EEEEECCCCeeeEEEec----cCceeeecCCCEEEEEec--CCeEEE
Q 004603          634 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE--IRYWSINNGSCAGVFKV----CNLMPIILKGCFILNSIF--NCYLLL  705 (743)
Q Consensus       634 ~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~--IrvWDl~tg~~v~~~~~----~~~i~~s~~g~~l~sgs~--Dg~I~v  705 (743)
                      ..+......+..++|+|+|.+..+..-.|..  |.|..-.....++.++.    .+.+.++|||+++++-..  +-.|..
T Consensus       127 ~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~a  206 (447)
T KOG4497|consen  127 YLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYA  206 (447)
T ss_pred             EEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeee
Confidence            2233234456889999999854433333331  11111112223333432    245789999999888643  444333


Q ss_pred             --EecccceEEEEecCCCCEEEEEeCCCeEEEeC
Q 004603          706 --HRIFLNLLSVSEWCNPDEISTSSWKDSCCSHR  737 (743)
Q Consensus       706 --h~~~v~~l~v~~~~~~~~laSgs~DG~V~iWd  737 (743)
                        +...+....|++.  +.+++.|++|+.+++-+
T Consensus       207 Ye~~lG~k~v~wsP~--~qflavGsyD~~lrvln  238 (447)
T KOG4497|consen  207 YERGLGLKFVEWSPC--NQFLAVGSYDQMLRVLN  238 (447)
T ss_pred             eeeccceeEEEeccc--cceEEeeccchhhhhhc
Confidence              3344555566554  78999999999988743

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.49  E-value=5.9e-06  Score=93.47  Aligned_cols=122  Identities=19%  Similarity=0.182  Sum_probs=83.8

Q ss_pred             CCeEEEEEcCCCCEEEEEe-CCCcEEEEE--CCC-CeEEEEEcccCCCEEEEEEcCCCCEEEEEeCC---CeEEEEECCC
Q 004603          556 SKVESCHFSPDGKLLATGG-HDKKAVLWC--TES-FTVKSTLEEHTQWITDVRFSPSLSRLATSSAD---RTVRVWDTEN  628 (743)
Q Consensus       556 ~~V~siafspdg~~LaSgs-~Dg~V~IWd--~~t-~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~D---g~VrvWDl~~  628 (743)
                      +.+...+|+|||+.|+..+ .++...||.  ++. +.....+..+...+...+|+|||+.|+..+.+   ..|.+||+.+
T Consensus       281 ~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~  360 (428)
T PRK01029        281 GTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLAT  360 (428)
T ss_pred             CCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCC
Confidence            3456789999999777665 466656664  432 23344455555677889999999988766543   4699999988


Q ss_pred             CCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCC--CcEEEEECCCCeeeEEE
Q 004603          629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN--SEIRYWSINNGSCAGVF  679 (743)
Q Consensus       629 ~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~D--g~IrvWDl~tg~~v~~~  679 (743)
                      +..  ..+......+.+..|+|+|..++++...+  ..|.+||+..++.....
T Consensus       361 g~~--~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt  411 (428)
T PRK01029        361 GRD--YQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIV  411 (428)
T ss_pred             CCe--EEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee
Confidence            664  33433344577899999999877666533  46888899877654433

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.45  E-value=1.7e-06  Score=94.86  Aligned_cols=217  Identities=14%  Similarity=0.101  Sum_probs=141.5

Q ss_pred             CCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004603          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE  585 (743)
Q Consensus       506 ~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~  585 (743)
                      .+-..+++.|++|++|......++.            .+..+-.++..|+.+|.++.|-.+.++++++  |+.|.+||.-
T Consensus       747 ENSFiSASkDKTVKLWSik~EgD~~------------~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPF  812 (1034)
T KOG4190|consen  747 ENSFISASKDKTVKLWSIKPEGDEI------------GTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDPF  812 (1034)
T ss_pred             ccceeeccCCceEEEEEeccccCcc------------ccceeeeEhhhccCcccceeeeeccceeeec--cCcceeeccc
Confidence            3566789999999999665543222            1223456778999999999999998888776  8899999987


Q ss_pred             CCeEEEEEc-----ccCCCEEEEEEcCCCCEE-EEEeCCCeEEEEECCCCCeeEEEE-----ecCCCCeEEEEEecCCCc
Q 004603          586 SFTVKSTLE-----EHTQWITDVRFSPSLSRL-ATSSADRTVRVWDTENPDYSLRTF-----TGHSTTVMSLDFHPSKED  654 (743)
Q Consensus       586 t~~~i~~l~-----~H~~~V~~vafsp~~~~L-aSgs~Dg~VrvWDl~~~~~~l~~l-----~~h~~~V~sl~fsp~g~~  654 (743)
                      -+.++..+.     +..+.|.|+. +-+...+ +-|+...+|+++|.+.... +..+     .+....+.+++..+.|.+
T Consensus       813 igr~Laq~~dapk~~a~~~ikcl~-nv~~~iliAgcsaeSTVKl~DaRsce~-~~E~kVcna~~Pna~~R~iaVa~~GN~  890 (1034)
T KOG4190|consen  813 IGRLLAQMEDAPKEGAGGNIKCLE-NVDRHILIAGCSAESTVKLFDARSCEW-TCELKVCNAPGPNALTRAIAVADKGNK  890 (1034)
T ss_pred             ccchhHhhhcCcccCCCceeEecc-cCcchheeeeccchhhheeeecccccc-eeeEEeccCCCCchheeEEEeccCcch
Confidence            666554221     2223455543 2133444 4446799999999998654 2322     244567889999999875


Q ss_pred             EEEEEeCCCcEEEEECCCCeeeEEEeccCc--ee-eecCCCEEEEEecCCeEEE-EecccceEEEEecCC----------
Q 004603          655 LLCSCDNNSEIRYWSINNGSCAGVFKVCNL--MP-IILKGCFILNSIFNCYLLL-HRIFLNLLSVSEWCN----------  720 (743)
Q Consensus       655 lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~~~--i~-~s~~g~~l~sgs~Dg~I~v-h~~~v~~l~v~~~~~----------  720 (743)
                      +. .+-..|+|.+.|.++|+.+..++...+  +. ..|...+++....|.++.+ |.......-....++          
T Consensus       891 lA-a~LSnGci~~LDaR~G~vINswrpmecdllqlaapsdq~L~~saldHslaVnWhaldgimh~q~kpppepahflqsv  969 (1034)
T KOG4190|consen  891 LA-AALSNGCIAILDARNGKVINSWRPMECDLLQLAAPSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPEPAHFLQSV  969 (1034)
T ss_pred             hh-HHhcCCcEEEEecCCCceeccCCcccchhhhhcCchhHHHHhhcccceeEeeehhcCCeeeeccCCCCcchhhhhcc
Confidence            54 666689999999999998887775433  11 2255566777777777777 543332222211110          


Q ss_pred             CCEEEEEeCCCeEEEeCCC
Q 004603          721 PDEISTSSWKDSCCSHREL  739 (743)
Q Consensus       721 ~~~laSgs~DG~V~iWd~~  739 (743)
                      +..+++......+.+|.+.
T Consensus       970 gpSLV~a~~Gn~lgVYad~  988 (1034)
T KOG4190|consen  970 GPSLVTAQNGNILGVYADS  988 (1034)
T ss_pred             CceeEEeccCcEEEEEecc
Confidence            2246666666677777543

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.44  E-value=3.1e-07  Score=96.18  Aligned_cols=127  Identities=17%  Similarity=0.251  Sum_probs=99.7

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC-----eEEEEEcccCCCEEEEEEcC-CCCEEEEEeCCCeEEEEECC
Q 004603          554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-----TVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTE  627 (743)
Q Consensus       554 H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~-----~~i~~l~~H~~~V~~vafsp-~~~~LaSgs~Dg~VrvWDl~  627 (743)
                      .++.|.++.|...+++++.|+..|.|.++|++..     .+...+ -|...|+++..-. ++.+|++++.+|+|++||.|
T Consensus       251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R  329 (425)
T KOG2695|consen  251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLR  329 (425)
T ss_pred             cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhhhhhccccceEeeccCcCceeEeeeh
Confidence            3456899999998999999999999999999863     344444 4888999987755 67889999999999999998


Q ss_pred             CCCe--eEEEEecCCCCeEEEEE--ecCCCcEEEEEeCCCcEEEEECCCCeeeEEEecc
Q 004603          628 NPDY--SLRTFTGHSTTVMSLDF--HPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVC  682 (743)
Q Consensus       628 ~~~~--~l~~l~~h~~~V~sl~f--sp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~  682 (743)
                      ..++  .+..+.||...-.-+-+  ++.. .++++++.|...|||.++.|..+.+++..
T Consensus       330 ~~K~~~~V~qYeGHvN~~a~l~~~v~~ee-g~I~s~GdDcytRiWsl~~ghLl~tipf~  387 (425)
T KOG2695|consen  330 ATKCKKSVMQYEGHVNLSAYLPAHVKEEE-GSIFSVGDDCYTRIWSLDSGHLLCTIPFP  387 (425)
T ss_pred             hhhcccceeeeeccccccccccccccccc-ceEEEccCeeEEEEEecccCceeeccCCC
Confidence            6432  37888888765444444  3443 36668999999999999999988877654

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.43  E-value=3.8e-07  Score=95.51  Aligned_cols=145  Identities=16%  Similarity=0.205  Sum_probs=111.1

Q ss_pred             EEEEcC--CCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCC----CeeE
Q 004603          560 SCHFSP--DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP----DYSL  633 (743)
Q Consensus       560 siafsp--dg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~----~~~l  633 (743)
                      .|+|+-  .|-. ++.+.+-.|-+-|++++-. ..|. .++.|.++.|+-.+++++.|+..|.|.++|+|..    ..+.
T Consensus       216 ~CawSlni~gyh-fs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a  292 (425)
T KOG2695|consen  216 SCAWSLNIMGYH-FSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCA  292 (425)
T ss_pred             hhhhhhccceee-ecccccceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcce
Confidence            346653  2334 4555677788889887543 2343 5677999999988999999999999999999976    4555


Q ss_pred             EEEecCCCCeEEEEEec-CCCcEEEEEeCCCcEEEEECCCCee---eEEEeccCc------eeeecCCCEEEEEecCCeE
Q 004603          634 RTFTGHSTTVMSLDFHP-SKEDLLCSCDNNSEIRYWSINNGSC---AGVFKVCNL------MPIILKGCFILNSIFNCYL  703 (743)
Q Consensus       634 ~~l~~h~~~V~sl~fsp-~g~~lL~Sgs~Dg~IrvWDl~tg~~---v~~~~~~~~------i~~s~~g~~l~sgs~Dg~I  703 (743)
                      ..+. |.+.|+++..-. ++. .|.+.+-+|+|++||+|.-+|   +..+.+|..      +-+.+...++++++.|+..
T Consensus       293 ~rly-h~Ssvtslq~Lq~s~q-~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcyt  370 (425)
T KOG2695|consen  293 QRLY-HDSSVTSLQILQFSQQ-KLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYT  370 (425)
T ss_pred             EEEE-cCcchhhhhhhccccc-eEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEE
Confidence            5555 889999987665 344 555777799999999998777   889998843      3355778899999999999


Q ss_pred             EEEecc
Q 004603          704 LLHRIF  709 (743)
Q Consensus       704 ~vh~~~  709 (743)
                      +||...
T Consensus       371 RiWsl~  376 (425)
T KOG2695|consen  371 RIWSLD  376 (425)
T ss_pred             EEEecc
Confidence            999876

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.42  E-value=0.0003  Score=77.40  Aligned_cols=153  Identities=14%  Similarity=0.210  Sum_probs=101.8

Q ss_pred             CCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCe--E--EEEEc-ccCCCEEEEEEcCCCCEEEEEe-CCCeEEEEECC-
Q 004603          556 SKVESCHFSPDGKLLATGG-HDKKAVLWCTESFT--V--KSTLE-EHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTE-  627 (743)
Q Consensus       556 ~~V~siafspdg~~LaSgs-~Dg~V~IWd~~t~~--~--i~~l~-~H~~~V~~vafsp~~~~LaSgs-~Dg~VrvWDl~-  627 (743)
                      ....++.|+|++++|++.. ....|.+|+++...  .  ...+. .....-..++|+|++++++... .+++|.+|++. 
T Consensus       144 ~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~  223 (345)
T PF10282_consen  144 PHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDP  223 (345)
T ss_dssp             TCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEET
T ss_pred             ccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecc
Confidence            4578999999999887764 23479999987644  2  22222 2345678999999999886555 58899999998 


Q ss_pred             -CCCe-eEEEEec----C--CCCeEEEEEecCCCcEEEEEeCCCcEEEEECC--CCe--eeEEEec----cCceeeecCC
Q 004603          628 -NPDY-SLRTFTG----H--STTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN--NGS--CAGVFKV----CNLMPIILKG  691 (743)
Q Consensus       628 -~~~~-~l~~l~~----h--~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~--tg~--~v~~~~~----~~~i~~s~~g  691 (743)
                       ++.. .+.....    .  ......|+++|+|++++++.-.+..|.+|+++  +++  .+..+..    ...+.++++|
T Consensus       224 ~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g  303 (345)
T PF10282_consen  224 SDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDG  303 (345)
T ss_dssp             TTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTS
T ss_pred             cCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCC
Confidence             3221 1112211    1  12578999999999999998888999999994  333  3333332    2457889999


Q ss_pred             CEEEEEe-cCCeEEEEec
Q 004603          692 CFILNSI-FNCYLLLHRI  708 (743)
Q Consensus       692 ~~l~sgs-~Dg~I~vh~~  708 (743)
                      ++|+++. .++.|.+++.
T Consensus       304 ~~l~Va~~~s~~v~vf~~  321 (345)
T PF10282_consen  304 RYLYVANQDSNTVSVFDI  321 (345)
T ss_dssp             SEEEEEETTTTEEEEEEE
T ss_pred             CEEEEEecCCCeEEEEEE
Confidence            9999886 4557777544

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.40  E-value=5.6e-05  Score=77.21  Aligned_cols=125  Identities=15%  Similarity=0.098  Sum_probs=94.6

Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECCC--CeEEE-EEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEE
Q 004603          558 VESCHFSPDGKLLATGGHDKKAVLWCTES--FTVKS-TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR  634 (743)
Q Consensus       558 V~siafspdg~~LaSgs~Dg~V~IWd~~t--~~~i~-~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~  634 (743)
                      +.++++++|++++++.++...|..|.++.  ...+. .....++.=.+..|+.....+|++..||++.|||+|....+..
T Consensus       161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~  240 (344)
T KOG4532|consen  161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMA  240 (344)
T ss_pred             eeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchh
Confidence            78999999999999999999999998865  23333 2233345557889999889999999999999999997654332


Q ss_pred             E----EecCCCCeEEEEEecCCCc-EEEEEeCCCcEEEEECCCCeeeEEEecc
Q 004603          635 T----FTGHSTTVMSLDFHPSKED-LLCSCDNNSEIRYWSINNGSCAGVFKVC  682 (743)
Q Consensus       635 ~----l~~h~~~V~sl~fsp~g~~-lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~  682 (743)
                      +    -..|.+.+..+.|++.|.. +|+..-.=+.++|-|+|+++-...+...
T Consensus       241 ~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~  293 (344)
T KOG4532|consen  241 EISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIP  293 (344)
T ss_pred             hhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecC
Confidence            2    2358899999999986643 4444444568999999998766555543

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=98.38  E-value=1.2e-06  Score=107.10  Aligned_cols=183  Identities=14%  Similarity=0.149  Sum_probs=142.6

Q ss_pred             eeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcc-cCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004603          551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-HTQWITDVRFSPSLSRLATSSADRTVRVWDTENP  629 (743)
Q Consensus       551 l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~-H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~  629 (743)
                      ++.|-..|.++.-+|...+.+||+.||.|++|-...+..+.+++. -...|+.++|+..|+.+..+..||.+.+|.+.. 
T Consensus      2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~p- 2282 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASP- 2282 (2439)
T ss_pred             eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCC-
Confidence            344556688888899889999999999999999888887777642 237899999999999999999999999999873 


Q ss_pred             CeeEEEEecCCCCeEEEEEecCCCcEEEEE---eCCCcEEEEECCCC---eeeEEEe--ccCceeeecCCCEEEEEecCC
Q 004603          630 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSC---DNNSEIRYWSINNG---SCAGVFK--VCNLMPIILKGCFILNSIFNC  701 (743)
Q Consensus       630 ~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sg---s~Dg~IrvWDl~tg---~~v~~~~--~~~~i~~s~~g~~l~sgs~Dg  701 (743)
                       .++.....|.....++.|...   +++++   +.++.|.+||..-.   .++++-.  +.+.+.+.|.-..+++|+.+|
T Consensus      2283 -k~~~s~qchnk~~~Df~Fi~s---~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G 2358 (2439)
T KOG1064|consen 2283 -KPYTSWQCHNKALSDFRFIGS---LLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKG 2358 (2439)
T ss_pred             -cceeccccCCccccceeeeeh---hhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcC
Confidence             347788889999999999863   45554   35678999997532   3444211  235578889999999999999


Q ss_pred             eEEEEecccceEEE---EecCCCCEEEEEeCCCeEEEeCCC
Q 004603          702 YLLLHRIFLNLLSV---SEWCNPDEISTSSWKDSCCSHREL  739 (743)
Q Consensus       702 ~I~vh~~~v~~l~v---~~~~~~~~laSgs~DG~V~iWd~~  739 (743)
                      .|++||..-..+.-   ..+ ...++++|+..|.++||+-.
T Consensus      2359 ~v~l~D~rqrql~h~~~~~~-~~~~f~~~ss~g~ikIw~~s 2398 (2439)
T KOG1064|consen 2359 EVCLFDIRQRQLRHTFQALD-TREYFVTGSSEGNIKIWRLS 2398 (2439)
T ss_pred             cEEEeehHHHHHHHHhhhhh-hhheeeccCcccceEEEEcc
Confidence            99999986432211   112 37799999999999999743

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.37  E-value=0.00033  Score=74.63  Aligned_cols=141  Identities=13%  Similarity=0.163  Sum_probs=101.2

Q ss_pred             eEEEEEcCCCCEEEEEeC-CCcEEEEECCC-CeEEE--EEcccCCC----------EEEEEEcCCCCEEEEEeC-CCeEE
Q 004603          558 VESCHFSPDGKLLATGGH-DKKAVLWCTES-FTVKS--TLEEHTQW----------ITDVRFSPSLSRLATSSA-DRTVR  622 (743)
Q Consensus       558 V~siafspdg~~LaSgs~-Dg~V~IWd~~t-~~~i~--~l~~H~~~----------V~~vafsp~~~~LaSgs~-Dg~Vr  622 (743)
                      -+-|+++++|++|+++.. -+.|.++-+.. |....  .+..|.+.          +.+..|.|++++|++++. -..|.
T Consensus        91 p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~  170 (346)
T COG2706          91 PCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIF  170 (346)
T ss_pred             CeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEE
Confidence            478999999999999975 46789998855 33222  22345555          889999999999988864 55799


Q ss_pred             EEECCCCCeeEE--EEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCC-eeeEEEec-------------cCcee
Q 004603          623 VWDTENPDYSLR--TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFKV-------------CNLMP  686 (743)
Q Consensus       623 vWDl~~~~~~l~--~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg-~~v~~~~~-------------~~~i~  686 (743)
                      +|++..+.....  ...........|.|||+++...+.+-.+++|-||..... ..+..+..             ...+.
T Consensus       171 ~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIh  250 (346)
T COG2706         171 LYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIH  250 (346)
T ss_pred             EEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEE
Confidence            999986553211  111234567889999999998889999999999998873 22222221             13377


Q ss_pred             eecCCCEEEEEe
Q 004603          687 IILKGCFILNSI  698 (743)
Q Consensus       687 ~s~~g~~l~sgs  698 (743)
                      ++++|+||++..
T Consensus       251 is~dGrFLYasN  262 (346)
T COG2706         251 ISPDGRFLYASN  262 (346)
T ss_pred             ECCCCCEEEEec
Confidence            889999998874

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.37  E-value=1.1e-06  Score=64.02  Aligned_cols=39  Identities=36%  Similarity=0.548  Sum_probs=37.0

Q ss_pred             CeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 004603          587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD  625 (743)
Q Consensus       587 ~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWD  625 (743)
                      ++++.++.+|...|++|+|+|++.+|+|++.|++|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            367889999999999999999999999999999999998

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.36  E-value=1.4e-06  Score=63.47  Aligned_cols=38  Identities=29%  Similarity=0.543  Sum_probs=36.2

Q ss_pred             eeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004603          546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC  583 (743)
Q Consensus       546 ~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd  583 (743)
                      +.+..+.+|.+.|++|+|+|++++|++|+.|++|+|||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            56788999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=98.35  E-value=1.7e-05  Score=88.06  Aligned_cols=112  Identities=16%  Similarity=0.255  Sum_probs=85.5

Q ss_pred             CCCCeEEEEEcCCCCEEEEE--eCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeC---CCeEEEEECCC
Q 004603          554 STSKVESCHFSPDGKLLATG--GHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA---DRTVRVWDTEN  628 (743)
Q Consensus       554 H~~~V~siafspdg~~LaSg--s~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~---Dg~VrvWDl~~  628 (743)
                      ..++|.++.|+|+++-|+++  -.=-+|.|||++ ++++..|  -.++-.++-|+|.|++|+.++.   -|.|-|||+.+
T Consensus       269 k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n  345 (566)
T KOG2315|consen  269 KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPN  345 (566)
T ss_pred             CCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccc
Confidence            47899999999999866654  334578999976 5666555  3556678999999999988887   57899999998


Q ss_pred             CCeeEEEEecCCCCeEEEEEecCCCcEEEEEeC-----CCcEEEEECC
Q 004603          629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN-----NSEIRYWSIN  671 (743)
Q Consensus       629 ~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~-----Dg~IrvWDl~  671 (743)
                      . .++..+....  .+-++|+|||.+++.+.+.     |..++||+..
T Consensus       346 ~-K~i~~~~a~~--tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt  390 (566)
T KOG2315|consen  346 R-KLIAKFKAAN--TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT  390 (566)
T ss_pred             h-hhccccccCC--ceEEEEcCCCcEEEEEeccccEEecCCeEEEEec
Confidence            4 4477766433  3457999999987755443     7789999976

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=98.34  E-value=4.1e-05  Score=85.07  Aligned_cols=132  Identities=17%  Similarity=0.217  Sum_probs=96.3

Q ss_pred             cEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEE--eCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcE
Q 004603          578 KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS--SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDL  655 (743)
Q Consensus       578 ~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSg--s~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~l  655 (743)
                      ++++.++....+...+. -.++|.++.|+|+++-|+++  -.-.+|.|||++- . ++..+  -+++-+++-|+|.|..+
T Consensus       252 ~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~-~-~v~df--~egpRN~~~fnp~g~ii  326 (566)
T KOG2315|consen  252 TLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG-K-PVFDF--PEGPRNTAFFNPHGNII  326 (566)
T ss_pred             eEEEEEecCceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcCCC-C-EeEeC--CCCCccceEECCCCCEE
Confidence            67777776434433333 47899999999999876554  3467899999884 2 24444  45777889999999876


Q ss_pred             EEEEeC--CCcEEEEECCCCeeeEEEecc--CceeeecCCCEEEEEec------CCeEEEEecccceEE
Q 004603          656 LCSCDN--NSEIRYWSINNGSCAGVFKVC--NLMPIILKGCFILNSIF------NCYLLLHRIFLNLLS  714 (743)
Q Consensus       656 L~Sgs~--Dg~IrvWDl~tg~~v~~~~~~--~~i~~s~~g~~l~sgs~------Dg~I~vh~~~v~~l~  714 (743)
                      +++|-.  -|.|-|||+.+.+++..+...  +.+.|+|||.|+++++.      |+.++||......+.
T Consensus       327 ~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l~  395 (566)
T KOG2315|consen  327 LLAGFGNLPGDMEVWDVPNRKLIAKFKAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLLH  395 (566)
T ss_pred             EEeecCCCCCceEEEeccchhhccccccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCceee
Confidence            666543  378999999999999888865  44779999999999876      555666766554443

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.33  E-value=1e-05  Score=91.26  Aligned_cols=218  Identities=10%  Similarity=0.098  Sum_probs=146.7

Q ss_pred             CEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004603          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES  586 (743)
Q Consensus       507 ~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t  586 (743)
                      .++++|+.||.+++.....+.......+    .....+...-.++.||++.|.-+.|+.....|.|...+|.|.||-+-.
T Consensus        27 gyIAcgG~dGlLKVlKl~t~t~d~~~~g----laa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlyk  102 (1189)
T KOG2041|consen   27 GYIACGGADGLLKVLKLGTDTTDLNKSG----LAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYK  102 (1189)
T ss_pred             CeEEeccccceeEEEEccccCCcccccc----cccccccchhhhhccCcceEEEEEeccccccccccCCCceEEEEeeec
Confidence            6999999999999996655432221111    112344566678999999999999999888999999999999998866


Q ss_pred             CeEEEEE--cccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCc
Q 004603          587 FTVKSTL--EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE  664 (743)
Q Consensus       587 ~~~i~~l--~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~  664 (743)
                      +.....+  ....+.|.+++|+.+|..|+..-.||.|.|=.++-.+.--..+++  .....+.|++|.+.+| .+-..|.
T Consensus       103 gsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg--~~l~hv~ws~D~~~~L-f~~ange  179 (1189)
T KOG2041|consen  103 GSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKG--QLLAHVLWSEDLEQAL-FKKANGE  179 (1189)
T ss_pred             ccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcch--heccceeecccHHHHH-hhhcCCc
Confidence            5433222  124567899999999999999999999998888754432223332  2245788999977555 5667899


Q ss_pred             EEEEECCCC-------eeeEEEecc----------------CceeeecCCCEEEEEecCCeEEEE-----------eccc
Q 004603          665 IRYWSINNG-------SCAGVFKVC----------------NLMPIILKGCFILNSIFNCYLLLH-----------RIFL  710 (743)
Q Consensus       665 IrvWDl~tg-------~~v~~~~~~----------------~~i~~s~~g~~l~sgs~Dg~I~vh-----------~~~v  710 (743)
                      +++||....       .|.....+.                +...+-|+-..++++..+|.+.+.           +...
T Consensus       180 ~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtgm  259 (1189)
T KOG2041|consen  180 THLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTGM  259 (1189)
T ss_pred             EEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEeccc
Confidence            999997532       121111110                112233677788888888887772           2223


Q ss_pred             ceEEEEecCCCCEEEEEeCCC
Q 004603          711 NLLSVSEWCNPDEISTSSWKD  731 (743)
Q Consensus       711 ~~l~v~~~~~~~~laSgs~DG  731 (743)
                      ......+..++..++.||.|.
T Consensus       260 ~~vgakWnh~G~vLAvcG~~~  280 (1189)
T KOG2041|consen  260 KIVGAKWNHNGAVLAVCGNDS  280 (1189)
T ss_pred             EeecceecCCCcEEEEccCcc
Confidence            333334444466777776553

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.32  E-value=0.00011  Score=82.85  Aligned_cols=141  Identities=13%  Similarity=0.043  Sum_probs=97.0

Q ss_pred             CeEEEEEcCCCCE-EEEEeCC---CcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEE-EEeC--CCeEEEEECCCC
Q 004603          557 KVESCHFSPDGKL-LATGGHD---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSA--DRTVRVWDTENP  629 (743)
Q Consensus       557 ~V~siafspdg~~-LaSgs~D---g~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~La-Sgs~--Dg~VrvWDl~~~  629 (743)
                      .+..-.|+|||+. ++..+.+   ..|.++|+.+++...... ..+.+...+|+|||+.|+ +.+.  +..|.++|+..+
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g  267 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK  267 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence            6789999999984 6654443   458888998877654443 456677889999998765 4433  356788888765


Q ss_pred             CeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCC--cEEEEECCCCeeeEEEe-ccCceeeecCCCEEEEEecC
Q 004603          630 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFK-VCNLMPIILKGCFILNSIFN  700 (743)
Q Consensus       630 ~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg--~IrvWDl~tg~~v~~~~-~~~~i~~s~~g~~l~sgs~D  700 (743)
                      .  ...+..+........|+|||..++++....+  .|.++|+.+++...... +.....++|+|.+|+..+..
T Consensus       268 ~--~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~~~~~SPDG~~Ia~~~~~  339 (419)
T PRK04043        268 T--LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKNNSSVSTYKNYIVYSSRE  339 (419)
T ss_pred             c--EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCcCceECCCCCEEEEEEcC
Confidence            4  3444444443456689999998887776555  58888998877643332 32335799999998776543

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=98.32  E-value=2.8e-05  Score=81.82  Aligned_cols=191  Identities=15%  Similarity=0.181  Sum_probs=133.0

Q ss_pred             CCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004603          504 DMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC  583 (743)
Q Consensus       504 ~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd  583 (743)
                      +.+.-+.+.+.|.++++|.-.+..       ..|.        .+..  --..+++++.++++.+.|+.|-..|+|.-+.
T Consensus        34 ~~e~gv~~~s~drtvrv~lkrds~-------q~wp--------sI~~--~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs   96 (404)
T KOG1409|consen   34 PKEEGVISVSEDRTVRVWLKRDSG-------QYWP--------SIYH--YMPSPCSAMEYVSESRRLYVGQDNGTVTEFA   96 (404)
T ss_pred             cCCCCeEEccccceeeeEEecccc-------ccCc--------hhhh--hCCCCceEeeeeccceEEEEEEecceEEEEE
Confidence            344667899999999999554431       1111        1111  1235688999999999999999999998886


Q ss_pred             CC----CCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCC------------------------------
Q 004603          584 TE----SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP------------------------------  629 (743)
Q Consensus       584 ~~----t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~------------------------------  629 (743)
                      +.    ....++....|...|+.+-|+-....+++.+.|+.+..--.+.+                              
T Consensus        97 ~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gq  176 (404)
T KOG1409|consen   97 LSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQ  176 (404)
T ss_pred             hhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccc
Confidence            53    34445566678888888888877777777777765432211110                              


Q ss_pred             ----------CeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeee-EEEeccC----ceeeecCCCEE
Q 004603          630 ----------DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA-GVFKVCN----LMPIILKGCFI  694 (743)
Q Consensus       630 ----------~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v-~~~~~~~----~i~~s~~g~~l  694 (743)
                                -.++.++.+|.+.+++++|.|.. .+|++|..|..|.+||+--++-+ ..+.+|.    .+........+
T Consensus       177 vt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~-~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l  255 (404)
T KOG1409|consen  177 ITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQ-RLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQL  255 (404)
T ss_pred             eEEEEEeecCCceEEEEcCcccceEEEEEcCCC-cEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheee
Confidence                      11366788999999999999975 47779999999999999754322 3333432    24455666778


Q ss_pred             EEEecCCeEEEEecccce
Q 004603          695 LNSIFNCYLLLHRIFLNL  712 (743)
Q Consensus       695 ~sgs~Dg~I~vh~~~v~~  712 (743)
                      ++.+.|+.|.+|+.....
T Consensus       256 ~S~~edg~i~~w~mn~~r  273 (404)
T KOG1409|consen  256 ISCGEDGGIVVWNMNVKR  273 (404)
T ss_pred             eeccCCCeEEEEecccee
Confidence            999999999998876543

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.30  E-value=1.5e-06  Score=98.35  Aligned_cols=153  Identities=20%  Similarity=0.318  Sum_probs=110.4

Q ss_pred             eEEEEEcCCC--CEEEEEeCCCcEEEEECCC---CeEEEEEcccCCCEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCe
Q 004603          558 VESCHFSPDG--KLLATGGHDKKAVLWCTES---FTVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDY  631 (743)
Q Consensus       558 V~siafspdg--~~LaSgs~Dg~V~IWd~~t---~~~i~~l~~H~~~V~~vafsp~-~~~LaSgs~Dg~VrvWDl~~~~~  631 (743)
                      |-.+.|+|..  .+-++.....+..||++..   ......+.+|+..|+.+.|+|. ...+++++.|..|..||++....
T Consensus        70 vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~  149 (1081)
T KOG0309|consen   70 VADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHR  149 (1081)
T ss_pred             hcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCc
Confidence            5566777633  2333333455567898743   3455677899999999999995 66889999999999999999888


Q ss_pred             eEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCC-eeeEEEeccCceeee-----cCCCEEEEEecCCeEEE
Q 004603          632 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFKVCNLMPII-----LKGCFILNSIFNCYLLL  705 (743)
Q Consensus       632 ~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg-~~v~~~~~~~~i~~s-----~~g~~l~sgs~Dg~I~v  705 (743)
                      ++..+..-...-..|.|+-..+.++++ +....|+|||++.| .++..++++.....+     .....+++.+.|++|++
T Consensus       150 p~ys~~~w~s~asqVkwnyk~p~vlas-shg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkf  228 (1081)
T KOG0309|consen  150 PFYSTSSWRSAASQVKWNYKDPNVLAS-SHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKF  228 (1081)
T ss_pred             ceeeeecccccCceeeecccCcchhhh-ccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceee
Confidence            787776656667889999888878855 44678999999976 466777775432222     12334777788888888


Q ss_pred             Eecccc
Q 004603          706 HRIFLN  711 (743)
Q Consensus       706 h~~~v~  711 (743)
                      |+..-.
T Consensus       229 w~y~kS  234 (1081)
T KOG0309|consen  229 WDYSKS  234 (1081)
T ss_pred             eccccc
Confidence            776543

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.29  E-value=0.00015  Score=90.65  Aligned_cols=151  Identities=11%  Similarity=0.089  Sum_probs=106.8

Q ss_pred             eEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeEEEEEccc---------------CCCEEEEEEcCCCCEE-EEEeCCCe
Q 004603          558 VESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEEH---------------TQWITDVRFSPSLSRL-ATSSADRT  620 (743)
Q Consensus       558 V~siafsp-dg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H---------------~~~V~~vafsp~~~~L-aSgs~Dg~  620 (743)
                      ..+|+|+| ++.++++.+.++.|++||..++... ++.+.               -.....|+|+|++..| ++-+.++.
T Consensus       685 P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~  763 (1057)
T PLN02919        685 PWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSS  763 (1057)
T ss_pred             CeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCe
Confidence            46899999 5667777778899999998776543 22211               1234579999998855 55566899


Q ss_pred             EEEEECCCCCeeEEE------------Eec--------CCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEe
Q 004603          621 VRVWDTENPDYSLRT------------FTG--------HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK  680 (743)
Q Consensus       621 VrvWDl~~~~~~l~~------------l~~--------h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~  680 (743)
                      |++||+.++...+..            +..        .-....+++|+++|. ++++...++.|++||..++.+.....
T Consensus       764 Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~-LYVADs~N~rIrviD~~tg~v~tiaG  842 (1057)
T PLN02919        764 IRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ-IYVADSYNHKIKKLDPATKRVTTLAG  842 (1057)
T ss_pred             EEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCc-EEEEECCCCEEEEEECCCCeEEEEec
Confidence            999999876532111            000        011346899999986 77788889999999998877653321


Q ss_pred             -----------------ccCceeeecCCCEEEEEecCCeEEEEeccc
Q 004603          681 -----------------VCNLMPIILKGCFILNSIFNCYLLLHRIFL  710 (743)
Q Consensus       681 -----------------~~~~i~~s~~g~~l~sgs~Dg~I~vh~~~v  710 (743)
                                       ....++++++|..+++-+.+++|++++...
T Consensus       843 ~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~  889 (1057)
T PLN02919        843 TGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNK  889 (1057)
T ss_pred             cCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCC
Confidence                             123478889999888889999999987654

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.26  E-value=2.5e-06  Score=88.20  Aligned_cols=151  Identities=17%  Similarity=0.262  Sum_probs=105.5

Q ss_pred             eCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe---EEEEEccc-----CCCEEEEEEcCC-CCEEEEEeCCCeEE
Q 004603          552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT---VKSTLEEH-----TQWITDVRFSPS-LSRLATSSADRTVR  622 (743)
Q Consensus       552 ~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~---~i~~l~~H-----~~~V~~vafsp~-~~~LaSgs~Dg~Vr  622 (743)
                      ..|.-.|.+|.|+.|...++++. |-.|.+|+++-..   .+.-++.|     +..|++..|+|. ...+.-++..|.|+
T Consensus       169 NaH~yhiNSiS~NsD~et~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ik  247 (460)
T COG5170         169 NAHPYHINSISFNSDKETLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIK  247 (460)
T ss_pred             ccceeEeeeeeecCchheeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEE
Confidence            57888899999999988888765 7789999986422   22233333     456899999995 56777777899999


Q ss_pred             EEECCCCCeeE---------------EEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCC-eeeEEEeccC---
Q 004603          623 VWDTENPDYSL---------------RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFKVCN---  683 (743)
Q Consensus       623 vWDl~~~~~~l---------------~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg-~~v~~~~~~~---  683 (743)
                      +-|+|....|.               ..+.+-.+.|..+.|++.|++++ +-+ =-+|+|||++.. .++.++..|.   
T Consensus       248 l~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIl-sRd-yltvkiwDvnm~k~pikTi~~h~~l~  325 (460)
T COG5170         248 LNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYIL-SRD-YLTVKIWDVNMAKNPIKTIPMHCDLM  325 (460)
T ss_pred             ehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEE-Eec-cceEEEEecccccCCceeechHHHHH
Confidence            99998543321               11223446788999999988555 544 358999999864 5677765331   


Q ss_pred             ----------------ceeeecCCCEEEEEecCCeEEE
Q 004603          684 ----------------LMPIILKGCFILNSIFNCYLLL  705 (743)
Q Consensus       684 ----------------~i~~s~~g~~l~sgs~Dg~I~v  705 (743)
                                      .+.|+-+...+++|+.....-+
T Consensus       326 ~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgi  363 (460)
T COG5170         326 DELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGI  363 (460)
T ss_pred             HHHHhhhhccceeeeEEEEecCCcccccccccccceee
Confidence                            1456667777777777665555

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.23  E-value=0.00036  Score=77.45  Aligned_cols=208  Identities=9%  Similarity=-0.078  Sum_probs=123.9

Q ss_pred             CCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004603          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE  585 (743)
Q Consensus       506 ~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~  585 (743)
                      +..+..++.|+.+..|+..++.       .+|.....             +.+.+.-.. .+..++.++.|+.|..||.+
T Consensus       105 ~~~v~v~~~~g~l~ald~~tG~-------~~W~~~~~-------------~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~  163 (377)
T TIGR03300       105 GGLVFVGTEKGEVIALDAEDGK-------ELWRAKLS-------------SEVLSPPLV-ANGLVVVRTNDGRLTALDAA  163 (377)
T ss_pred             CCEEEEEcCCCEEEEEECCCCc-------EeeeeccC-------------ceeecCCEE-ECCEEEEECCCCeEEEEEcC
Confidence            4566677788888888665442       11211100             111111011 34567777889999999999


Q ss_pred             CCeEEEEEcccCCCEEEEE-EcC--CCCEEEEEeCCCeEEEEECCCCCeeEEEEec-CCC------C---e-EEEEEecC
Q 004603          586 SFTVKSTLEEHTQWITDVR-FSP--SLSRLATSSADRTVRVWDTENPDYSLRTFTG-HST------T---V-MSLDFHPS  651 (743)
Q Consensus       586 t~~~i~~l~~H~~~V~~va-fsp--~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~-h~~------~---V-~sl~fsp~  651 (743)
                      +++.+-.+......+.... -+|  .+..++.+..++.|..+|++++.. +..... ...      .   + .+..+.  
T Consensus       164 tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~~~~~g~v~ald~~tG~~-~W~~~~~~~~g~~~~~~~~~~~~~p~~~--  240 (377)
T TIGR03300       164 TGERLWTYSRVTPALTLRGSASPVIADGGVLVGFAGGKLVALDLQTGQP-LWEQRVALPKGRTELERLVDVDGDPVVD--  240 (377)
T ss_pred             CCceeeEEccCCCceeecCCCCCEEECCEEEEECCCCEEEEEEccCCCE-eeeeccccCCCCCchhhhhccCCccEEE--
Confidence            9988766654322211000 011  134678888899999999998764 332211 000      0   0 111222  


Q ss_pred             CCcEEEEEeCCCcEEEEECCCCeeeEEEeccCceeeecCCCEEEEEecCCeEEEEecccceEEEEec-----------CC
Q 004603          652 KEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNLMPIILKGCFILNSIFNCYLLLHRIFLNLLSVSEW-----------CN  720 (743)
Q Consensus       652 g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~~~i~~s~~g~~l~sgs~Dg~I~vh~~~v~~l~v~~~-----------~~  720 (743)
                      +. .++.++.++.++.||..+|+.+..............+..++.++.|+.+...+.....+.|...           -.
T Consensus       241 ~~-~vy~~~~~g~l~a~d~~tG~~~W~~~~~~~~~p~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i~  319 (377)
T TIGR03300       241 GG-QVYAVSYQGRVAALDLRSGRVLWKRDASSYQGPAVDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAVV  319 (377)
T ss_pred             CC-EEEEEEcCCEEEEEECCCCcEEEeeccCCccCceEeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEEE
Confidence            23 4446777999999999999887766643333344567788888888888886654332222220           12


Q ss_pred             CCEEEEEeCCCeEEEeCC
Q 004603          721 PDEISTSSWKDSCCSHRE  738 (743)
Q Consensus       721 ~~~laSgs~DG~V~iWd~  738 (743)
                      ++.+++++.||.|+++|.
T Consensus       320 g~~l~~~~~~G~l~~~d~  337 (377)
T TIGR03300       320 GGYLVVGDFEGYLHWLSR  337 (377)
T ss_pred             CCEEEEEeCCCEEEEEEC
Confidence            568999999999999975

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.22  E-value=7.3e-06  Score=87.72  Aligned_cols=147  Identities=13%  Similarity=0.131  Sum_probs=87.2

Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECCCCe----EEEEEcccCCCEEEEEEcCCCCEEEEE---eCCCeEEEEECCCCC
Q 004603          558 VESCHFSPDGKLLATGGHDKKAVLWCTESFT----VKSTLEEHTQWITDVRFSPSLSRLATS---SADRTVRVWDTENPD  630 (743)
Q Consensus       558 V~siafspdg~~LaSgs~Dg~V~IWd~~t~~----~i~~l~~H~~~V~~vafsp~~~~LaSg---s~Dg~VrvWDl~~~~  630 (743)
                      +..+.+++++++||++..++...+++++...    ++.++... ..-+++.|..+...+..+   +....+.+|.+..  
T Consensus        65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~-~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~--  141 (390)
T KOG3914|consen   65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVP-KRPTAISFIREDTSVLVADKAGDVYSFDILSADS--  141 (390)
T ss_pred             ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecc-cCcceeeeeeccceEEEEeecCCceeeeeecccc--
Confidence            4456678889999999888887777765422    22222221 222344444443444333   4455556666554  


Q ss_pred             eeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEe-ccCcee--ee-cCCCEEEEEecCCeEEEE
Q 004603          631 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-VCNLMP--II-LKGCFILNSIFNCYLLLH  706 (743)
Q Consensus       631 ~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~-~~~~i~--~s-~~g~~l~sgs~Dg~I~vh  706 (743)
                      .+...+.||.+.++.|+|+||+. ++++++.|..|||-....--.+..|- ||+.+.  ++ .++..|++++.|++|++|
T Consensus       142 ~~~~~~lGhvSml~dVavS~D~~-~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~LlS~sGD~tlr~W  220 (390)
T KOG3914|consen  142 GRCEPILGHVSMLLDVAVSPDDQ-FIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYLLLSGSGDKTLRLW  220 (390)
T ss_pred             cCcchhhhhhhhhheeeecCCCC-EEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCceeeecCCCCcEEEE
Confidence            23566778999999999999986 56699999999997665444444433 232211  11 223335555555555555


Q ss_pred             ec
Q 004603          707 RI  708 (743)
Q Consensus       707 ~~  708 (743)
                      +.
T Consensus       221 d~  222 (390)
T KOG3914|consen  221 DI  222 (390)
T ss_pred             ec
Confidence            54

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.22  E-value=3e-05  Score=89.27  Aligned_cols=143  Identities=10%  Similarity=0.123  Sum_probs=102.8

Q ss_pred             CCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004603          505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT  584 (743)
Q Consensus       505 ~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~  584 (743)
                      ++++++-|+++|.|+++.....                    . .....|+..      ..+|.+++||+.||+|.|..+
T Consensus        48 ~~~~~~~GtH~g~v~~~~~~~~--------------------~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl  100 (846)
T KOG2066|consen   48 HDKFFALGTHRGAVYLTTCQGN--------------------P-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSL  100 (846)
T ss_pred             hcceeeeccccceEEEEecCCc--------------------c-ccccccccc------ccCCceEEEecCCCcEEEeec
Confidence            4589999999999999844332                    1 122233332      458999999999999999999


Q ss_pred             CCCeEEEEEcccCCCEEEEEEcCC-----CCEEEEEeCCCeEEEEECCC--CCeeEEEEecCCCCeEEEEEecCCCcEEE
Q 004603          585 ESFTVKSTLEEHTQWITDVRFSPS-----LSRLATSSADRTVRVWDTEN--PDYSLRTFTGHSTTVMSLDFHPSKEDLLC  657 (743)
Q Consensus       585 ~t~~~i~~l~~H~~~V~~vafsp~-----~~~LaSgs~Dg~VrvWDl~~--~~~~l~~l~~h~~~V~sl~fsp~g~~lL~  657 (743)
                      .+.+...++.- ..++.+|+++|+     .+.+++|+..| +.++.-+-  .+..+ .+..-.++|.+++|..+   +++
T Consensus       101 ~~~~~~~~~df-~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l~~~eG~I~~i~W~g~---lIA  174 (846)
T KOG2066|consen  101 FTDDEITQYDF-KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-VLSEGEGPIHSIKWRGN---LIA  174 (846)
T ss_pred             cCCccceeEec-CCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-eeecCccceEEEEecCc---EEE
Confidence            88777666653 567999999997     56899999888 66664221  11112 45556789999999843   776


Q ss_pred             EEeCCCcEEEEECCCCeeeEEEec
Q 004603          658 SCDNNSEIRYWSINNGSCAGVFKV  681 (743)
Q Consensus       658 Sgs~Dg~IrvWDl~tg~~v~~~~~  681 (743)
                      -++.+ .|+|||+.+++.+..+..
T Consensus       175 Wand~-Gv~vyd~~~~~~l~~i~~  197 (846)
T KOG2066|consen  175 WANDD-GVKVYDTPTRQRLTNIPP  197 (846)
T ss_pred             EecCC-CcEEEeccccceeeccCC
Confidence            66655 499999999887766654

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.20  E-value=4.3e-06  Score=90.30  Aligned_cols=182  Identities=15%  Similarity=0.083  Sum_probs=129.9

Q ss_pred             CCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCC-ceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeC-CCcEEEE
Q 004603          505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKG-FTFTEFQLIPASTSKVESCHFSPDGKLLATGGH-DKKAVLW  582 (743)
Q Consensus       505 ~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~-Dg~V~IW  582 (743)
                      ..+++.+++.|+.++.|.-                 +. .-.+.+..+..|-+.|.+++.+-++.+++|.+. |+.++++
T Consensus        19 ka~fiiqASlDGh~KFWkK-----------------s~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~Kvf   81 (558)
T KOG0882|consen   19 KAKFIIQASLDGHKKFWKK-----------------SRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVF   81 (558)
T ss_pred             hhheEEeeecchhhhhcCC-----------------CCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEE
Confidence            3479999999999999922                 22 234567788899999999999999999999888 9999999


Q ss_pred             ECCCCeEEEEEc--ccCCCEEEEEEcCC-C-CEE-EEEeCCCeEEEEECCCCCeeEE-EEecCCCCeEEEEEecCCCcEE
Q 004603          583 CTESFTVKSTLE--EHTQWITDVRFSPS-L-SRL-ATSSADRTVRVWDTENPDYSLR-TFTGHSTTVMSLDFHPSKEDLL  656 (743)
Q Consensus       583 d~~t~~~i~~l~--~H~~~V~~vafsp~-~-~~L-aSgs~Dg~VrvWDl~~~~~~l~-~l~~h~~~V~sl~fsp~g~~lL  656 (743)
                      |+++...+.-++  .-.+.+.++ .++. . ..| ++.-.++.|.|+|-+...+... .-.-|..+|..+.+.+.+. .+
T Consensus        82 DvEn~DminmiKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~D-s~  159 (558)
T KOG0882|consen   82 DVENFDMINMIKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGD-SA  159 (558)
T ss_pred             EeeccchhhhcccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeecccc-ce
Confidence            998765543222  122223222 2332 1 133 3334589999999876554333 3345899999999999987 45


Q ss_pred             EEEeCCCcEEEEECCC------CeeeEEEec-------------cCceeeecCCCEEEEEecCCeEEE
Q 004603          657 CSCDNNSEIRYWSINN------GSCAGVFKV-------------CNLMPIILKGCFILNSIFNCYLLL  705 (743)
Q Consensus       657 ~Sgs~Dg~IrvWDl~t------g~~v~~~~~-------------~~~i~~s~~g~~l~sgs~Dg~I~v  705 (743)
                      ++....|.|..|....      .+....++.             .+++.++|+|..+.+-..|.+|++
T Consensus       160 vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~  227 (558)
T KOG0882|consen  160 VSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRG  227 (558)
T ss_pred             eeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEE
Confidence            5888889999998772      222222221             245889999999999999999998

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.20  E-value=7.5e-05  Score=81.36  Aligned_cols=143  Identities=15%  Similarity=0.150  Sum_probs=111.3

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCC-cEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe
Q 004603          553 ASTSKVESCHFSPDGKLLATGGHDK-KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY  631 (743)
Q Consensus       553 ~H~~~V~siafspdg~~LaSgs~Dg-~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~  631 (743)
                      +|.+.|.-..+..+++-++.|..|| .+-|+|.++++.. .+++.-+.|.++..+++|++++.+.....|.+.|++++..
T Consensus       357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~k-r~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv  435 (668)
T COG4946         357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVK-RIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNV  435 (668)
T ss_pred             CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEE-EeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCe
Confidence            6777799889988888999999999 8999999987654 4556678899999999999999999999999999999774


Q ss_pred             eEEEEecCCCCeEEEEEecCCCcEEEEEeCCC----cEEEEECCCCeeeEEEecc---CceeeecCCCEEEEEe
Q 004603          632 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS----EIRYWSINNGSCAGVFKVC---NLMPIILKGCFILNSI  698 (743)
Q Consensus       632 ~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg----~IrvWDl~tg~~v~~~~~~---~~i~~s~~g~~l~sgs  698 (743)
                       ...-+...+-|+.++|||+++++. -+--+|    .|+++|+..++....-...   -+.+|.|+++||.--+
T Consensus       436 -~~idkS~~~lItdf~~~~nsr~iA-YafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs  507 (668)
T COG4946         436 -RLIDKSEYGLITDFDWHPNSRWIA-YAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLS  507 (668)
T ss_pred             -eEecccccceeEEEEEcCCceeEE-EecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEe
Confidence             233334567899999999987544 443344    6999999988876544321   1245788998866543

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.19  E-value=0.00019  Score=81.06  Aligned_cols=142  Identities=13%  Similarity=0.055  Sum_probs=90.3

Q ss_pred             CCCCeEEEEEcCCCCEEEE-EeCC--CcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEe-CCC--eEEEEECC
Q 004603          554 STSKVESCHFSPDGKLLAT-GGHD--KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS-ADR--TVRVWDTE  627 (743)
Q Consensus       554 H~~~V~siafspdg~~LaS-gs~D--g~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs-~Dg--~VrvWDl~  627 (743)
                      ..+.+.+.+|+|||+.|+. .+.+  ..|.++|+.+++.. .+..+........|+|||+.|+-.+ ..+  .|.++|+.
T Consensus       231 ~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~  309 (419)
T PRK04043        231 SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLT-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLN  309 (419)
T ss_pred             CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEE-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECC
Confidence            4455667889999986654 3334  45777788777644 3444443344568999998776555 333  57777887


Q ss_pred             CCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCC--------CcEEEEECCCCeeeEEEec--cCceeeecCCCEEEEE
Q 004603          628 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN--------SEIRYWSINNGSCAGVFKV--CNLMPIILKGCFILNS  697 (743)
Q Consensus       628 ~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~D--------g~IrvWDl~tg~~v~~~~~--~~~i~~s~~g~~l~sg  697 (743)
                      ++.....++.+.    ....|+|+|+.+++++..+        ..|.+.|+.++........  .....|+|+|..|+..
T Consensus       310 ~g~~~rlt~~g~----~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~~~~~~p~~SPDG~~I~f~  385 (419)
T PRK04043        310 SGSVEQVVFHGK----NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTANGVNQFPRFSSDGGSIMFI  385 (419)
T ss_pred             CCCeEeCccCCC----cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCCCCcCCeEECCCCCEEEEE
Confidence            765422222222    1248999999887776543        3688889888764322222  2336789999987766


Q ss_pred             ecC
Q 004603          698 IFN  700 (743)
Q Consensus       698 s~D  700 (743)
                      +.+
T Consensus       386 ~~~  388 (419)
T PRK04043        386 KYL  388 (419)
T ss_pred             Ecc
Confidence            543

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.15  E-value=7.1e-06  Score=83.35  Aligned_cols=171  Identities=11%  Similarity=0.135  Sum_probs=106.5

Q ss_pred             eeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE-EEEEc-ccCCCEEEEEEcCCCCEEEEEeC-----C
Q 004603          546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV-KSTLE-EHTQWITDVRFSPSLSRLATSSA-----D  618 (743)
Q Consensus       546 ~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~-i~~l~-~H~~~V~~vafsp~~~~LaSgs~-----D  618 (743)
                      ...+++.-|+++-.+-+.+-.++.++++..||.+.+++.+.... .+.+. .|.+ -.+.++...++.|.++..     -
T Consensus        80 ~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~-~as~~~~~~~~~i~s~~~g~~n~~  158 (319)
T KOG4714|consen   80 DPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSG-SASRKICRHGNSILSGGCGNWNAQ  158 (319)
T ss_pred             CceeeeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhccccccc-ccccceeecccEEecCCcceEeec
Confidence            44555556665555555555778899999999999999875111 11111 1111 111222223444433321     2


Q ss_pred             CeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeee-EEEeccC----ceeeec-CCC
Q 004603          619 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA-GVFKVCN----LMPIIL-KGC  692 (743)
Q Consensus       619 g~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v-~~~~~~~----~i~~s~-~g~  692 (743)
                      +..+.|+++..+....... ....|.++|-||.-.+++++|+.||.|-+||.+..... ..++.|.    .+-|+| ++.
T Consensus       159 d~~~a~~~~p~~t~~~~~~-~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~  237 (319)
T KOG4714|consen  159 DNFYANTLDPIKTLIPSKK-ALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPE  237 (319)
T ss_pred             cceeeeccccccccccccc-ccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCch
Confidence            3355666654332111111 22449999999998999999999999999999987433 2233332    256775 677


Q ss_pred             EEEEEecCCeEEEEecccceEEEEec
Q 004603          693 FILNSIFNCYLLLHRIFLNLLSVSEW  718 (743)
Q Consensus       693 ~l~sgs~Dg~I~vh~~~v~~l~v~~~  718 (743)
                      .|+++++||.+-.|+...+.+.+...
T Consensus       238 ~Lft~sedGslw~wdas~~~l~i~~~  263 (319)
T KOG4714|consen  238 HLFTCSEDGSLWHWDASTTFLSISNQ  263 (319)
T ss_pred             heeEecCCCcEEEEcCCCceEEecCc
Confidence            89999999999999998877776544

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.13  E-value=0.00014  Score=79.27  Aligned_cols=108  Identities=19%  Similarity=0.252  Sum_probs=83.9

Q ss_pred             eEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCC----eEE
Q 004603          547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR----TVR  622 (743)
Q Consensus       547 ~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg----~Vr  622 (743)
                      +++.+...-+.|.++..+++|++++.+.+...+.+.|+++++....=+...+-|+.+.|||++++||-+--+|    .|+
T Consensus       393 e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Ik  472 (668)
T COG4946         393 EVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIK  472 (668)
T ss_pred             eEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEE
Confidence            4566677778899999999999999999888999999999887655555667899999999999999887766    489


Q ss_pred             EEECCCCCeeEEEEecCCCCeEEEEEecCCCcEE
Q 004603          623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLL  656 (743)
Q Consensus       623 vWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL  656 (743)
                      ++|+..++.  .......+.-.+-+|.|+++++.
T Consensus       473 lydm~~~Ki--y~vTT~ta~DfsPaFD~d~ryLY  504 (668)
T COG4946         473 LYDMDGGKI--YDVTTPTAYDFSPAFDPDGRYLY  504 (668)
T ss_pred             EEecCCCeE--EEecCCcccccCcccCCCCcEEE
Confidence            999987653  22222333345567777777654

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.11  E-value=0.00084  Score=68.90  Aligned_cols=170  Identities=9%  Similarity=-0.025  Sum_probs=104.9

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEE-EecCC---C
Q 004603          566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT-FTGHS---T  641 (743)
Q Consensus       566 dg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~-l~~h~---~  641 (743)
                      ++..+++++.++.|..||..+++.+-.+.. ...+.... ...+..++.++.|+.|+.+|+.+++. +.. .....   .
T Consensus        35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~-~W~~~~~~~~~~~  111 (238)
T PF13360_consen   35 DGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGGRVYVGTSDGSLYALDAKTGKV-LWSIYLTSSPPAG  111 (238)
T ss_dssp             ETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETTEEEEEETTSEEEEEETTTSCE-EEEEEE-SSCTCS
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eecccccccccceeeeEecccCCcce-eeeeccccccccc
Confidence            566777878999999999999998877764 22211111 11356677777889999999999886 444 23221   1


Q ss_pred             CeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEeccCc-------------eeeecCCCEEEEEecCCe-EEE--
Q 004603          642 TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNL-------------MPIILKGCFILNSIFNCY-LLL--  705 (743)
Q Consensus       642 ~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~~~-------------i~~s~~g~~l~sgs~Dg~-I~v--  705 (743)
                      ..........+. .++.+..++.|..+|+++|+.+..+.....             ......+..++.++.++. +.+  
T Consensus       112 ~~~~~~~~~~~~-~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~d~  190 (238)
T PF13360_consen  112 VRSSSSPAVDGD-RLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGRVVAVDL  190 (238)
T ss_dssp             TB--SEEEEETT-EEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSSEEEEET
T ss_pred             cccccCceEecC-EEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCCeEEEEEC
Confidence            112222222244 444666689999999999999888875331             111122337777776663 444  


Q ss_pred             ------EecccceEEEEecCCCCEEEEEeCCCeEEEeCCC
Q 004603          706 ------HRIFLNLLSVSEWCNPDEISTSSWKDSCCSHREL  739 (743)
Q Consensus       706 ------h~~~v~~l~v~~~~~~~~laSgs~DG~V~iWd~~  739 (743)
                            |..........+...+..++.++.++.|..||-.
T Consensus       191 ~tg~~~w~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~d~~  230 (238)
T PF13360_consen  191 ATGEKLWSKPISGIYSLPSVDGGTLYVTSSDGRLYALDLK  230 (238)
T ss_dssp             TTTEEEEEECSS-ECECEECCCTEEEEEETTTEEEEEETT
T ss_pred             CCCCEEEEecCCCccCCceeeCCEEEEEeCCCEEEEEECC
Confidence                  3222222222123346788888899999999854

...

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.10  E-value=0.0011  Score=73.43  Aligned_cols=205  Identities=9%  Similarity=-0.004  Sum_probs=122.5

Q ss_pred             CCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004603          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE  585 (743)
Q Consensus       506 ~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~  585 (743)
                      +..+..++.++.|..++..++.       .+|......         ...   .....  ++..++.++.|+.|..+|..
T Consensus        65 ~~~v~v~~~~g~v~a~d~~tG~-------~~W~~~~~~---------~~~---~~p~v--~~~~v~v~~~~g~l~ald~~  123 (377)
T TIGR03300        65 GGKVYAADADGTVVALDAETGK-------RLWRVDLDE---------RLS---GGVGA--DGGLVFVGTEKGEVIALDAE  123 (377)
T ss_pred             CCEEEEECCCCeEEEEEccCCc-------EeeeecCCC---------Ccc---cceEE--cCCEEEEEcCCCEEEEEECC
Confidence            3567777788888888655442       122111110         000   11222  46778888899999999999


Q ss_pred             CCeEEEEEcccCCCEEE-EEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCe-----EEEEEecCCCcEEEEE
Q 004603          586 SFTVKSTLEEHTQWITD-VRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTV-----MSLDFHPSKEDLLCSC  659 (743)
Q Consensus       586 t~~~i~~l~~H~~~V~~-vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V-----~sl~fsp~g~~lL~Sg  659 (743)
                      +++.+...... +.+.+ ..+  .+..++.++.|+.|..||.++++. +..+......+     .+..+. + . .++.+
T Consensus       124 tG~~~W~~~~~-~~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~-~W~~~~~~~~~~~~~~~sp~~~-~-~-~v~~~  196 (377)
T TIGR03300       124 DGKELWRAKLS-SEVLSPPLV--ANGLVVVRTNDGRLTALDAATGER-LWTYSRVTPALTLRGSASPVIA-D-G-GVLVG  196 (377)
T ss_pred             CCcEeeeeccC-ceeecCCEE--ECCEEEEECCCCeEEEEEcCCCce-eeEEccCCCceeecCCCCCEEE-C-C-EEEEE
Confidence            99887655432 22221 111  245777788899999999998775 44443222111     111222 2 2 45577


Q ss_pred             eCCCcEEEEECCCCeeeEEEeccCc-----------e--eeecCCCEEEEEecCCeEEEEecccceEEEEec--------
Q 004603          660 DNNSEIRYWSINNGSCAGVFKVCNL-----------M--PIILKGCFILNSIFNCYLLLHRIFLNLLSVSEW--------  718 (743)
Q Consensus       660 s~Dg~IrvWDl~tg~~v~~~~~~~~-----------i--~~s~~g~~l~sgs~Dg~I~vh~~~v~~l~v~~~--------  718 (743)
                      ..++.|..+|+++|+.+........           +  .....+..++.++.++.+..++.....+.|...        
T Consensus       197 ~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~~~~p~  276 (377)
T TIGR03300       197 FAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDASSYQGPA  276 (377)
T ss_pred             CCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccCCccCce
Confidence            7789999999999987765432100           0  111245678888888888886654333333221        


Q ss_pred             CCCCEEEEEeCCCeEEEeCC
Q 004603          719 CNPDEISTSSWKDSCCSHRE  738 (743)
Q Consensus       719 ~~~~~laSgs~DG~V~iWd~  738 (743)
                      ..++.++.++.||.|+.+|.
T Consensus       277 ~~~~~vyv~~~~G~l~~~d~  296 (377)
T TIGR03300       277 VDDNRLYVTDADGVVVALDR  296 (377)
T ss_pred             EeCCEEEEECCCCeEEEEEC
Confidence            12568888889999888865

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.08  E-value=3.2e-05  Score=89.82  Aligned_cols=148  Identities=19%  Similarity=0.172  Sum_probs=110.5

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeC---------CCeEEEEE
Q 004603          555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA---------DRTVRVWD  625 (743)
Q Consensus       555 ~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~---------Dg~VrvWD  625 (743)
                      .+.|+-++.  +++++++|...|+|.+-|.++.+.+.++..|++.|.++..  .|+.|+||+.         |..|+|||
T Consensus       177 a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYD  252 (1118)
T KOG1275|consen  177 ASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYD  252 (1118)
T ss_pred             CCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec--cCCeEEEeecccccccccccchhhhhh
Confidence            334555554  6899999999999999999999999999999999988765  4889999986         66799999


Q ss_pred             CCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEE---CCCCee-eEEEe----ccCceeeecCCCEEEEE
Q 004603          626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS---INNGSC-AGVFK----VCNLMPIILKGCFILNS  697 (743)
Q Consensus       626 l~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWD---l~tg~~-v~~~~----~~~~i~~s~~g~~l~sg  697 (743)
                      +|..+. +.-+.-+.+ ..-+.|+|.=...++.++..|.+.+-|   +.+... +..+.    +...+++++.|..++.|
T Consensus       253 LRmmra-l~PI~~~~~-P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafg  330 (1118)
T KOG1275|consen  253 LRMMRA-LSPIQFPYG-PQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFG  330 (1118)
T ss_pred             hhhhhc-cCCcccccC-chhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEe
Confidence            997543 333322333 356789998666777788889999988   333211 11111    13457788999999999


Q ss_pred             ecCCeEEEEec
Q 004603          698 IFNCYLLLHRI  708 (743)
Q Consensus       698 s~Dg~I~vh~~  708 (743)
                      ..+|.|.+|..
T Consensus       331 d~~g~v~~wa~  341 (1118)
T KOG1275|consen  331 DHEGHVNLWAD  341 (1118)
T ss_pred             cccCcEeeecC
Confidence            99999999873

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.08  E-value=9.7e-05  Score=84.59  Aligned_cols=121  Identities=20%  Similarity=0.341  Sum_probs=98.2

Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCC------------CEEEEEeCCCeEEEEE
Q 004603          558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL------------SRLATSSADRTVRVWD  625 (743)
Q Consensus       558 V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~------------~~LaSgs~Dg~VrvWD  625 (743)
                      -.++.|+|.| +||-|+. ..|.|-|..+.+.+.+++-|...|+.|+|.|..            -+|+++...|.|.+||
T Consensus        18 ~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d   95 (1062)
T KOG1912|consen   18 RNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVD   95 (1062)
T ss_pred             ccccccCccc-eEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEE
Confidence            5678899876 6777775 468899999999999999999999999998721            2578888899999999


Q ss_pred             CCCCCeeEEEEecCCCCeEEEEEecC---CCcEEEEEeCCCcEEEEECCCCeeeEEEec
Q 004603          626 TENPDYSLRTFTGHSTTVMSLDFHPS---KEDLLCSCDNNSEIRYWSINNGSCAGVFKV  681 (743)
Q Consensus       626 l~~~~~~l~~l~~h~~~V~sl~fsp~---g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~  681 (743)
                      ...... +..+..|.++|..++|-+.   .+++|++-....+|.+|+..+|+.+..+..
T Consensus        96 ~~~~s~-~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~y  153 (1062)
T KOG1912|consen   96 FVLASV-INWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDY  153 (1062)
T ss_pred             ehhhhh-hhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeecccc
Confidence            998654 6778888999999999764   345777777778999999999987665543

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.07  E-value=0.0004  Score=78.34  Aligned_cols=126  Identities=12%  Similarity=0.152  Sum_probs=85.2

Q ss_pred             eeeeEEEeeCCCCCeEEEEEcC-CCCEEEEE----eCCCcE----EEEECCCCeEE--EEE-cccCCCEEEEEEcCCCCE
Q 004603          544 TFTEFQLIPASTSKVESCHFSP-DGKLLATG----GHDKKA----VLWCTESFTVK--STL-EEHTQWITDVRFSPSLSR  611 (743)
Q Consensus       544 ~~~~~~~l~~H~~~V~siafsp-dg~~LaSg----s~Dg~V----~IWd~~t~~~i--~~l-~~H~~~V~~vafsp~~~~  611 (743)
                      .++.+..++.-.+ ..++.|+- +...+.|.    +.+|.+    ++|++...+..  ... -.....|.|++++|+...
T Consensus       195 klEvL~yirTE~d-Pl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~k  273 (545)
T PF11768_consen  195 KLEVLSYIRTEND-PLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDK  273 (545)
T ss_pred             cEEEEEEEEecCC-cEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccce
Confidence            3444444444334 46777876 44444443    334443    35555443321  111 245778999999999999


Q ss_pred             EEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCe
Q 004603          612 LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS  674 (743)
Q Consensus       612 LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~  674 (743)
                      |+.|+.||.|.+||...+.   ..+..+.-.++.++|||+|. +++.|+.-|.|.+||+.-..
T Consensus       274 LvlGC~DgSiiLyD~~~~~---t~~~ka~~~P~~iaWHp~ga-i~~V~s~qGelQ~FD~ALsp  332 (545)
T PF11768_consen  274 LVLGCEDGSIILYDTTRGV---TLLAKAEFIPTLIAWHPDGA-IFVVGSEQGELQCFDMALSP  332 (545)
T ss_pred             EEEEecCCeEEEEEcCCCe---eeeeeecccceEEEEcCCCc-EEEEEcCCceEEEEEeecCc
Confidence            9999999999999987643   33334556688999999987 66688888999999987543

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.06  E-value=0.006  Score=63.46  Aligned_cols=173  Identities=14%  Similarity=0.111  Sum_probs=109.2

Q ss_pred             eEEEEEc-CCCCEEEEEeCCCcEEEEECCCCeEEEEEcc-----cCCCEEEEEEcCCCCEEEEEeCC--------CeEEE
Q 004603          558 VESCHFS-PDGKLLATGGHDKKAVLWCTESFTVKSTLEE-----HTQWITDVRFSPSLSRLATSSAD--------RTVRV  623 (743)
Q Consensus       558 V~siafs-pdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~-----H~~~V~~vafsp~~~~LaSgs~D--------g~Vrv  623 (743)
                      ...+++. +++++ +.+..+ .+.++|..+++....+..     ......++++.|+|++.++....        |.|..
T Consensus        42 ~~G~~~~~~~g~l-~v~~~~-~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~  119 (246)
T PF08450_consen   42 PNGMAFDRPDGRL-YVADSG-GIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYR  119 (246)
T ss_dssp             EEEEEEECTTSEE-EEEETT-CEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEE
T ss_pred             CceEEEEccCCEE-EEEEcC-ceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEE
Confidence            6777887 56554 444544 456669988765544432     34568899999999988877654        45777


Q ss_pred             EECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCee----eEEE---ec----cCceeeecCCC
Q 004603          624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC----AGVF---KV----CNLMPIILKGC  692 (743)
Q Consensus       624 WDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~----v~~~---~~----~~~i~~s~~g~  692 (743)
                      ++.. +.  +..+...-...+.|+|+|+++.++++-+..+.|..||+.....    ...+   ..    ...+++..+|+
T Consensus       120 ~~~~-~~--~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~  196 (246)
T PF08450_consen  120 IDPD-GK--VTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGN  196 (246)
T ss_dssp             EETT-SE--EEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-
T ss_pred             ECCC-Ce--EEEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCC
Confidence            7766 33  3333334566899999999998888888899999999863221    1222   22    23478888998


Q ss_pred             EEEEEecCCeEEEEecccceEEEEecC--CCCEEEEEeCC-CeEEE
Q 004603          693 FILNSIFNCYLLLHRIFLNLLSVSEWC--NPDEISTSSWK-DSCCS  735 (743)
Q Consensus       693 ~l~sgs~Dg~I~vh~~~v~~l~v~~~~--~~~~laSgs~D-G~V~i  735 (743)
                      +.++....+.|.+.+.....+.....+  ....++-|+.| ++++|
T Consensus       197 l~va~~~~~~I~~~~p~G~~~~~i~~p~~~~t~~~fgg~~~~~L~v  242 (246)
T PF08450_consen  197 LWVADWGGGRIVVFDPDGKLLREIELPVPRPTNCAFGGPDGKTLYV  242 (246)
T ss_dssp             EEEEEETTTEEEEEETTSCEEEEEE-SSSSEEEEEEESTTSSEEEE
T ss_pred             EEEEEcCCCEEEEECCCccEEEEEcCCCCCEEEEEEECCCCCEEEE
Confidence            888877888888877776555433322  12334444555 34443

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.01  E-value=9.1e-05  Score=83.41  Aligned_cols=76  Identities=20%  Similarity=0.216  Sum_probs=64.2

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 004603          553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD  630 (743)
Q Consensus       553 ~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~  630 (743)
                      .....|.|++++|+...|+.|+.||.|++||...+-.  .+..+.-..+.++|||+|..|++|+.-|.|.+||+.-..
T Consensus       257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t--~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp  332 (545)
T PF11768_consen  257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVT--LLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP  332 (545)
T ss_pred             ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCee--eeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence            4667899999999999999999999999999876533  333445668899999999999999999999999986543

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=97.98  E-value=4.1e-05  Score=89.03  Aligned_cols=141  Identities=19%  Similarity=0.266  Sum_probs=110.2

Q ss_pred             CCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeC---------C
Q 004603          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH---------D  576 (743)
Q Consensus       506 ~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~---------D  576 (743)
                      .+++.+|...|+|.+-                   +...++.++++.+|++.|.++..  .|++|++||.         |
T Consensus       187 nr~lf~G~t~G~V~Lr-------------------D~~s~~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D  245 (1118)
T KOG1275|consen  187 NRNLFCGDTRGTVFLR-------------------DPNSFETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMD  245 (1118)
T ss_pred             CcEEEeecccceEEee-------------------cCCcCceeeeeeccccceeeeec--cCCeEEEeeccccccccccc
Confidence            4788888888888777                   44566789999999999988777  6889999874         6


Q ss_pred             CcEEEEECCCCeEEEEEcccCCCEEEEEEcCC-CCEEEEEeCCCeEEEEE---CCCCCeeEEEEecCCCCeEEEEEecCC
Q 004603          577 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWD---TENPDYSLRTFTGHSTTVMSLDFHPSK  652 (743)
Q Consensus       577 g~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~-~~~LaSgs~Dg~VrvWD---l~~~~~~l~~l~~h~~~V~sl~fsp~g  652 (743)
                      ..|+|||++..+.+.-+.-|.++ .-++|+|. ...+++++..|.+.+-|   +.++...+..+....+.+.++++++++
T Consensus       246 ~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~  324 (1118)
T KOG1275|consen  246 PFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNG  324 (1118)
T ss_pred             chhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCC
Confidence            78899999987766655555544 56789996 66788888999999999   444433234444455669999999997


Q ss_pred             CcEEEEEeCCCcEEEEE
Q 004603          653 EDLLCSCDNNSEIRYWS  669 (743)
Q Consensus       653 ~~lL~Sgs~Dg~IrvWD  669 (743)
                      . .++.|..+|.|.+|-
T Consensus       325 ~-alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  325 D-ALAFGDHEGHVNLWA  340 (1118)
T ss_pred             c-eEEEecccCcEeeec
Confidence            6 788999999999996

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=97.97  E-value=0.0027  Score=69.55  Aligned_cols=152  Identities=10%  Similarity=0.035  Sum_probs=98.2

Q ss_pred             eEEEEEcCCCCEEEEEe-C-CCcEEEEECCCCeEEEEEcc------------------------------------cCCC
Q 004603          558 VESCHFSPDGKLLATGG-H-DKKAVLWCTESFTVKSTLEE------------------------------------HTQW  599 (743)
Q Consensus       558 V~siafspdg~~LaSgs-~-Dg~V~IWd~~t~~~i~~l~~------------------------------------H~~~  599 (743)
                      ...++++|||++|++.. . +..|-|.|+.+++.+..+.-                                    ++..
T Consensus       107 ~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~  186 (352)
T TIGR02658       107 PWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTE  186 (352)
T ss_pred             cceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeee
Confidence            34788899999888776 3 67888898887665543310                                    0001


Q ss_pred             EEEE---------EEcC-CCCEEEEEeCCCeEEEEECCCCC----eeEEEEec-------CCCCeEEEEEecCCCcEEEE
Q 004603          600 ITDV---------RFSP-SLSRLATSSADRTVRVWDTENPD----YSLRTFTG-------HSTTVMSLDFHPSKEDLLCS  658 (743)
Q Consensus       600 V~~v---------afsp-~~~~LaSgs~Dg~VrvWDl~~~~----~~l~~l~~-------h~~~V~sl~fsp~g~~lL~S  658 (743)
                      |...         .|.+ ++.+++.... |+|.+.|+....    ..+..+..       ..+.+.-++++|++..+++.
T Consensus       187 vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~  265 (352)
T TIGR02658       187 VFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLL  265 (352)
T ss_pred             eecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEE
Confidence            1000         1223 6777766655 999999964322    11222211       12333459999999988875


Q ss_pred             Ee---------CCCcEEEEECCCCeeeEEEecc---CceeeecCCC-EEEEEe-cCCeEEEEeccc
Q 004603          659 CD---------NNSEIRYWSINNGSCAGVFKVC---NLMPIILKGC-FILNSI-FNCYLLLHRIFL  710 (743)
Q Consensus       659 gs---------~Dg~IrvWDl~tg~~v~~~~~~---~~i~~s~~g~-~l~sgs-~Dg~I~vh~~~v  710 (743)
                      ..         ..++|.++|..+++.+..+...   ..+.+++|++ +|++.. .++.|.+.+...
T Consensus       266 ~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t  331 (352)
T TIGR02658       266 ADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAET  331 (352)
T ss_pred             ecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcC
Confidence            42         2258999999999999888743   4588999999 777665 577788877643

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=97.94  E-value=0.0012  Score=70.46  Aligned_cols=156  Identities=12%  Similarity=0.052  Sum_probs=107.0

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEECCC--CeEE--EEEcccCCCEEEEEEcCCCCEEEEEeC-CCeEEEE
Q 004603          553 ASTSKVESCHFSPDGKLLATGGHD---KKAVLWCTES--FTVK--STLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVW  624 (743)
Q Consensus       553 ~H~~~V~siafspdg~~LaSgs~D---g~V~IWd~~t--~~~i--~~l~~H~~~V~~vafsp~~~~LaSgs~-Dg~VrvW  624 (743)
                      .+.+.++-++|+|+.++|+++..+   |.|..|.++.  |+..  .........-+.|++++++++|+++.. -|.|.++
T Consensus        37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~  116 (346)
T COG2706          37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVY  116 (346)
T ss_pred             cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEE
Confidence            445668899999999999888654   6777777664  4332  111122233478999999999998875 7899999


Q ss_pred             ECCCCCee--EEEEecCCCC----------eEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEE----e---ccCce
Q 004603          625 DTENPDYS--LRTFTGHSTT----------VMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF----K---VCNLM  685 (743)
Q Consensus       625 Dl~~~~~~--l~~l~~h~~~----------V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~----~---~~~~i  685 (743)
                      -++.....  +.....|.+.          +....|.|++++++++.=.--.|.+|++..|+....-    +   +...+
T Consensus       117 p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi  196 (346)
T COG2706         117 PLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHI  196 (346)
T ss_pred             EcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceE
Confidence            98764321  1122335544          8899999999866654433347999999977643221    1   34669


Q ss_pred             eeecCCCEEEEEe-cCCeEEEEec
Q 004603          686 PIILKGCFILNSI-FNCYLLLHRI  708 (743)
Q Consensus       686 ~~s~~g~~l~sgs-~Dg~I~vh~~  708 (743)
                      .|+|++++.+... .+++|.+|..
T Consensus       197 ~FHpn~k~aY~v~EL~stV~v~~y  220 (346)
T COG2706         197 VFHPNGKYAYLVNELNSTVDVLEY  220 (346)
T ss_pred             EEcCCCcEEEEEeccCCEEEEEEE
Confidence            9999999987754 5778877544

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=97.90  E-value=0.006  Score=63.52  Aligned_cols=178  Identities=12%  Similarity=0.033  Sum_probs=99.6

Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcc-------cCCCEEEEEEcCC------CCEEEEEeCCCeEEEE
Q 004603          558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-------HTQWITDVRFSPS------LSRLATSSADRTVRVW  624 (743)
Q Consensus       558 V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~-------H~~~V~~vafsp~------~~~LaSgs~Dg~VrvW  624 (743)
                      =.-++||||+.+||.+...|+|++||+.... +..+..       -...|..+.|-+.      ...|+.-..+|.++-|
T Consensus        46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~-lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy  124 (282)
T PF15492_consen   46 WRKLAWSPDCTLLAYAESTGTIRVFDLMGSE-LFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSY  124 (282)
T ss_pred             heEEEECCCCcEEEEEcCCCeEEEEecccce-eEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeE
Confidence            5679999999999999999999999987533 333321       1345666777542      1246666778888877


Q ss_pred             ECCCC--C--eeEEEEe---cCCCCeEEEEEecCCCcEEEEEeCCCc----------EEEEECCCCeeeEEEe--ccCce
Q 004603          625 DTENP--D--YSLRTFT---GHSTTVMSLDFHPSKEDLLCSCDNNSE----------IRYWSINNGSCAGVFK--VCNLM  685 (743)
Q Consensus       625 Dl~~~--~--~~l~~l~---~h~~~V~sl~fsp~g~~lL~Sgs~Dg~----------IrvWDl~tg~~v~~~~--~~~~i  685 (743)
                      -+..+  .  ...++|.   .+...|.++.|+|...-+++.|+....          +..|-+-++.+.....  ....+
T Consensus       125 ~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~  204 (282)
T PF15492_consen  125 LVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDI  204 (282)
T ss_pred             EEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccc
Confidence            65321  1  1122222   346789999999997766666654432          4445444433221111  00111


Q ss_pred             eeec-CCCEEEEEecCCeEEEE----ecccceEEEEecCCCCEEEEEeCCCeEEEeCCCc
Q 004603          686 PIIL-KGCFILNSIFNCYLLLH----RIFLNLLSVSEWCNPDEISTSSWKDSCCSHRELY  740 (743)
Q Consensus       686 ~~s~-~g~~l~sgs~Dg~I~vh----~~~v~~l~v~~~~~~~~laSgs~DG~V~iWd~~~  740 (743)
                      ...+ ...++-..    .+++.    ......+.++..+++..|++...+|.|.+|+-..
T Consensus       205 ~~~~~~~~~~~~~----~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPs  260 (282)
T PF15492_consen  205 TASSKRRGLLRIP----SFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPS  260 (282)
T ss_pred             cccccccceeecc----ceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCc
Confidence            1111 00000000    01111    1122334445555678899999999999997554

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.87  E-value=0.00045  Score=79.82  Aligned_cols=70  Identities=20%  Similarity=0.239  Sum_probs=63.9

Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 004603          558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE  627 (743)
Q Consensus       558 V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~  627 (743)
                      +++++|+|..-.|+.|-.-|.+.+|...+.+.-.....|+.+|..+.|+++|..++|+..-|.|.+|...
T Consensus        62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             hhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            6679999999899999999999999988877766777899999999999999999999999999999865

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.86  E-value=0.00013  Score=78.43  Aligned_cols=94  Identities=14%  Similarity=0.221  Sum_probs=80.3

Q ss_pred             EEEEECCCCeEEEEEcccCCCEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEE
Q 004603          579 AVLWCTESFTVKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLC  657 (743)
Q Consensus       579 V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~-~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~  657 (743)
                      |++.+..+.+....+.+|...|.+++|+|..+ ++..++.+.+|+|.|+++.. ++..+..| ..+++++|+-+..+++.
T Consensus       175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~-~vssy~a~-~~~wSC~wDlde~h~IY  252 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSC-VVSSYIAY-NQIWSCCWDLDERHVIY  252 (463)
T ss_pred             eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccce-eeeheecc-CCceeeeeccCCcceeE
Confidence            66666666666667778889999999999755 78889999999999999844 47778877 78999999999999999


Q ss_pred             EEeCCCcEEEEECCCCe
Q 004603          658 SCDNNSEIRYWSINNGS  674 (743)
Q Consensus       658 Sgs~Dg~IrvWDl~tg~  674 (743)
                      +|...|.|.|||++..+
T Consensus       253 aGl~nG~VlvyD~R~~~  269 (463)
T KOG1645|consen  253 AGLQNGMVLVYDMRQPE  269 (463)
T ss_pred             EeccCceEEEEEccCCC
Confidence            99999999999999654

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.84  E-value=0.00019  Score=77.05  Aligned_cols=122  Identities=19%  Similarity=0.188  Sum_probs=90.1

Q ss_pred             eeEEEeeCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCC-CCEEEEEeCCCeEEE
Q 004603          546 TEFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRV  623 (743)
Q Consensus       546 ~~~~~l~~H~~~V~siafspdg~-~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~-~~~LaSgs~Dg~Vrv  623 (743)
                      +....+.+|...|.+++|+|..+ ++..++.+++|+|.|+++...+..+..| ..+++++|+-+ .++|+.|...|.|.|
T Consensus       184 kssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~Vlv  262 (463)
T KOG1645|consen  184 KSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLV  262 (463)
T ss_pred             chhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEE
Confidence            33446678888999999999766 8899999999999999998888888887 78999999886 567888889999999


Q ss_pred             EECCCCCeeEEEEec--CCCCeEEEEEe------cCCCcEEEEEeCCCcEEEEECC
Q 004603          624 WDTENPDYSLRTFTG--HSTTVMSLDFH------PSKEDLLCSCDNNSEIRYWSIN  671 (743)
Q Consensus       624 WDl~~~~~~l~~l~~--h~~~V~sl~fs------p~g~~lL~Sgs~Dg~IrvWDl~  671 (743)
                      ||++..+.++..+.+  ...+|..|+.-      +.|. +|+..+.+  +.+|.+.
T Consensus       263 yD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gg-lLv~~lt~--l~f~ei~  315 (463)
T KOG1645|consen  263 YDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGG-LLVFALTV--LQFYEIV  315 (463)
T ss_pred             EEccCCCchHhhhhhhhccCcceeecccCccccccccc-eEEeeehh--hhhhhhh
Confidence            999987765555544  12344444322      2233 55444433  5666654

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.80  E-value=0.0029  Score=67.46  Aligned_cols=166  Identities=12%  Similarity=0.098  Sum_probs=110.4

Q ss_pred             CccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeC------------------CCcEEEEECCCCeEEEE
Q 004603          531 DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH------------------DKKAVLWCTESFTVKST  592 (743)
Q Consensus       531 ~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~------------------Dg~V~IWd~~t~~~i~~  592 (743)
                      ...+.+|+..  ..+..+.++..|--.-..+.+.|||+.|+++-.                  +-.+.+.|..+++.+..
T Consensus        76 ~G~IgVyd~~--~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q  153 (305)
T PF07433_consen   76 RGVIGVYDAA--RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQ  153 (305)
T ss_pred             cEEEEEEECc--CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeee
Confidence            3334444443  245677778877777788999999987777631                  12344445667776665


Q ss_pred             --E--cccCCCEEEEEEcCCCCEEEEEeCCCe-------EEEEECCCCCeeEEEEe-------cCCCCeEEEEEecCCCc
Q 004603          593 --L--EEHTQWITDVRFSPSLSRLATSSADRT-------VRVWDTENPDYSLRTFT-------GHSTTVMSLDFHPSKED  654 (743)
Q Consensus       593 --l--~~H~~~V~~vafsp~~~~LaSgs~Dg~-------VrvWDl~~~~~~l~~l~-------~h~~~V~sl~fsp~g~~  654 (743)
                        +  .-|...|..++++++|..++..-..|.       |-+++-...   +..+.       .-...|-+|++++++..
T Consensus       154 ~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~---~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~  230 (305)
T PF07433_consen  154 VELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA---LRLLPAPEEQWRRLNGYIGSIAADRDGRL  230 (305)
T ss_pred             eecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc---ceeccCChHHHHhhCCceEEEEEeCCCCE
Confidence              3  337778999999999877666654432       334433321   22221       23467899999999998


Q ss_pred             EEEEEeCCCcEEEEECCCCeeeEEEeccCceeeecCCC-EEEEEecCC
Q 004603          655 LLCSCDNNSEIRYWSINNGSCAGVFKVCNLMPIILKGC-FILNSIFNC  701 (743)
Q Consensus       655 lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~~~i~~s~~g~-~l~sgs~Dg  701 (743)
                      +.+|+-..+.+.+||..+++++........+.+.+... |+++.+...
T Consensus       231 ia~tsPrGg~~~~~d~~tg~~~~~~~l~D~cGva~~~~~f~~ssG~G~  278 (305)
T PF07433_consen  231 IAVTSPRGGRVAVWDAATGRLLGSVPLPDACGVAPTDDGFLVSSGQGQ  278 (305)
T ss_pred             EEEECCCCCEEEEEECCCCCEeeccccCceeeeeecCCceEEeCCCcc
Confidence            99999999999999999999998887766555443222 555555443

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.77  E-value=0.0092  Score=61.13  Aligned_cols=145  Identities=9%  Similarity=0.025  Sum_probs=93.7

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEE-cccC---CCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCC
Q 004603          566 DGKLLATGGHDKKAVLWCTESFTVKSTL-EEHT---QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHST  641 (743)
Q Consensus       566 dg~~LaSgs~Dg~V~IWd~~t~~~i~~l-~~H~---~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~  641 (743)
                      ++..++.++.|+.|+.+|..+++.+..+ ....   ...........+..++.+..++.|..+|+++++. +..+.....
T Consensus        75 ~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~-~w~~~~~~~  153 (238)
T PF13360_consen   75 DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKL-LWKYPVGEP  153 (238)
T ss_dssp             ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEE-EEEEESSTT
T ss_pred             cccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcE-EEEeecCCC
Confidence            4556677778889999999999988774 3221   1112222222377888888899999999999875 555554332


Q ss_pred             C----------e-EEEEEecCCCcEEEEEeCCCc-EEEEECCCCeeeEEEeccCcee-eecCCCEEEEEecCCeEEEEec
Q 004603          642 T----------V-MSLDFHPSKEDLLCSCDNNSE-IRYWSINNGSCAGVFKVCNLMP-IILKGCFILNSIFNCYLLLHRI  708 (743)
Q Consensus       642 ~----------V-~sl~fsp~g~~lL~Sgs~Dg~-IrvWDl~tg~~v~~~~~~~~i~-~s~~g~~l~sgs~Dg~I~vh~~  708 (743)
                      .          + ..+.+. ++ .++ .++.++. +.+ |+.+++.+.......... ...++..++.++.++.|.+++.
T Consensus       154 ~~~~~~~~~~~~~~~~~~~-~~-~v~-~~~~~g~~~~~-d~~tg~~~w~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~d~  229 (238)
T PF13360_consen  154 RGSSPISSFSDINGSPVIS-DG-RVY-VSSGDGRVVAV-DLATGEKLWSKPISGIYSLPSVDGGTLYVTSSDGRLYALDL  229 (238)
T ss_dssp             -SS--EEEETTEEEEEECC-TT-EEE-EECCTSSEEEE-ETTTTEEEEEECSS-ECECEECCCTEEEEEETTTEEEEEET
T ss_pred             CCCcceeeecccccceEEE-CC-EEE-EEcCCCeEEEE-ECCCCCEEEEecCCCccCCceeeCCEEEEEeCCCEEEEEEC
Confidence            2          1 222222 33 344 5555665 555 999999765444233333 6688889998889999998887


Q ss_pred             ccceEEE
Q 004603          709 FLNLLSV  715 (743)
Q Consensus       709 ~v~~l~v  715 (743)
                      ......|
T Consensus       230 ~tG~~~W  236 (238)
T PF13360_consen  230 KTGKVVW  236 (238)
T ss_dssp             TTTEEEE
T ss_pred             CCCCEEe
Confidence            7665554

...

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=97.75  E-value=0.00013  Score=82.61  Aligned_cols=116  Identities=17%  Similarity=0.274  Sum_probs=88.1

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe---------------EEEEEcccCCCEEEEEEcCCCCEEEEEeCCC
Q 004603          555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT---------------VKSTLEEHTQWITDVRFSPSLSRLATSSADR  619 (743)
Q Consensus       555 ~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~---------------~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg  619 (743)
                      .....|++|+....+||+|+.||.++|..+.+..               .-.+++||.+.|.-+.|+.....|-|+..+|
T Consensus        14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G   93 (1189)
T KOG2041|consen   14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG   93 (1189)
T ss_pred             CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence            4568899999999999999999999999765411               1246789999999999999888999999999


Q ss_pred             eEEEEECCCCCeeEE-EEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECC
Q 004603          620 TVRVWDTENPDYSLR-TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN  671 (743)
Q Consensus       620 ~VrvWDl~~~~~~l~-~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~  671 (743)
                      .|.||-+-++..+-. .-....+.|.+++|..+|..+ +..-.||.|.|=.+.
T Consensus        94 lIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kI-cIvYeDGavIVGsvd  145 (1189)
T KOG2041|consen   94 LIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKI-CIVYEDGAVIVGSVD  145 (1189)
T ss_pred             eEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEE-EEEEccCCEEEEeec
Confidence            999999887664322 122345778999999988743 345556655554443

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=97.74  E-value=0.0033  Score=68.95  Aligned_cols=103  Identities=14%  Similarity=0.009  Sum_probs=78.5

Q ss_pred             CcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeC----------CCeEEEEECCCCCeeEEEEecC-------
Q 004603          577 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA----------DRTVRVWDTENPDYSLRTFTGH-------  639 (743)
Q Consensus       577 g~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~----------Dg~VrvWDl~~~~~~l~~l~~h-------  639 (743)
                      ++|.|.|..+.+.+.++..-..+- .+ ++|+++.|+.+..          +..|.+||+.+.+. +..+.--       
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~-~~~i~~p~~p~~~~  103 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLP-IADIELPEGPRFLV  103 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcE-EeEEccCCCchhhc
Confidence            789999999999888886433332 24 8999998876655          88999999999775 5555421       


Q ss_pred             CCCeEEEEEecCCCcEEEEEeC-CCcEEEEECCCCeeeEEEecc
Q 004603          640 STTVMSLDFHPSKEDLLCSCDN-NSEIRYWSINNGSCAGVFKVC  682 (743)
Q Consensus       640 ~~~V~sl~fsp~g~~lL~Sgs~-Dg~IrvWDl~tg~~v~~~~~~  682 (743)
                      ......++++|+|++++++--. +..|.|+|+.+++.+..+...
T Consensus       104 ~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp  147 (352)
T TIGR02658       104 GTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVP  147 (352)
T ss_pred             cCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCC
Confidence            1223478999999988877644 899999999999988877643

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=97.72  E-value=0.0019  Score=72.03  Aligned_cols=200  Identities=16%  Similarity=0.139  Sum_probs=112.1

Q ss_pred             ccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEE
Q 004603          534 GRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA  613 (743)
Q Consensus       534 ~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~La  613 (743)
                      ..+||...|.....+.++++....-.-+.||.|++++|.-..| .|.||+..+..++..-.-.-..|....|+|.+.+||
T Consensus       284 l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llA  362 (698)
T KOG2314|consen  284 LIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLA  362 (698)
T ss_pred             EEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccc-eEEEEecCceeeecccccCCccccCcccCCCcceEE
Confidence            3445555555445555554444444567899999999887764 688888765433321111223344445555444332


Q ss_pred             EEeC---------------------------------------------------------CCeEEEEECCCCCeeEEEE
Q 004603          614 TSSA---------------------------------------------------------DRTVRVWDTENPDYSLRTF  636 (743)
Q Consensus       614 Sgs~---------------------------------------------------------Dg~VrvWDl~~~~~~l~~l  636 (743)
                      -=..                                                         -..+-|+.++....++...
T Consensus       363 Ywtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~v  442 (698)
T KOG2314|consen  363 YWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVV  442 (698)
T ss_pred             EEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceee
Confidence            2110                                                         0012222233222222222


Q ss_pred             ecCCCCeEEEEEecCCCcEEEEEeCC--CcEEEEECCC-C---eeeEEEe--ccCceeeecCCCEEEEEec---CCeEEE
Q 004603          637 TGHSTTVMSLDFHPSKEDLLCSCDNN--SEIRYWSINN-G---SCAGVFK--VCNLMPIILKGCFILNSIF---NCYLLL  705 (743)
Q Consensus       637 ~~h~~~V~sl~fsp~g~~lL~Sgs~D--g~IrvWDl~t-g---~~v~~~~--~~~~i~~s~~g~~l~sgs~---Dg~I~v  705 (743)
                      . ....|...+|.|.|..+.+-.+.+  .+|++|-+.+ .   +.+..+.  ..+.+.++|.|.+++.+..   .|.+.+
T Consensus       443 e-lke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F  521 (698)
T KOG2314|consen  443 E-LKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEF  521 (698)
T ss_pred             e-cchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEecccccceEE
Confidence            2 345678889999998765544433  4789998873 2   2334443  2456889999999988754   566776


Q ss_pred             Eeccc------------ceEEEEecCCCCEEEEEeCCCeEEE
Q 004603          706 HRIFL------------NLLSVSEWCNPDEISTSSWKDSCCS  735 (743)
Q Consensus       706 h~~~v------------~~l~v~~~~~~~~laSgs~DG~V~i  735 (743)
                      .+...            ....+.+++.+.++++++.-.+.++
T Consensus       522 ~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~wrhk~  563 (698)
T KOG2314|consen  522 YDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSSSWRHKV  563 (698)
T ss_pred             EecchhhhhhccCccccccccceECCCCCEEEEeeehhhhcc
Confidence            55442            1122333444889999887665443

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=97.71  E-value=0.0021  Score=74.00  Aligned_cols=206  Identities=13%  Similarity=0.138  Sum_probs=139.4

Q ss_pred             CCCCceEEEEecCCC-ccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCC
Q 004603          478 GASSKSLLMFGSDGM-GSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS  556 (743)
Q Consensus       478 ~s~~~s~~~fs~dg~-~~l~~~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~  556 (743)
                      +...+..+.|.|... ..+.+++    ...-+++++...|.|-+|++...                   ..+..+..|.+
T Consensus        54 h~s~V~~VrWap~~~p~~llS~~----~~~lliAsaD~~GrIil~d~~~~-------------------s~~~~l~~~~~  110 (1062)
T KOG1912|consen   54 HQSAVTSVRWAPAPSPRDLLSPS----SSQLLIASADISGRIILVDFVLA-------------------SVINWLSHSND  110 (1062)
T ss_pred             CccceeEEEeccCCCchhccCcc----ccceeEEeccccCcEEEEEehhh-------------------hhhhhhcCCCc
Confidence            456888899998765 2222211    13467889999999999966443                   23455677888


Q ss_pred             CeEEEEEcC---CC-CEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCC-
Q 004603          557 KVESCHFSP---DG-KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPD-  630 (743)
Q Consensus       557 ~V~siafsp---dg-~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp-~~~~LaSgs~Dg~VrvWDl~~~~-  630 (743)
                      +|..++|-+   +. .+|+.-..-.+|.+|+.++|+.+-....-.....|++++| |.+.|+.-+..|.|.+-+.-..+ 
T Consensus       111 ~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~se  190 (1062)
T KOG1912|consen  111 SVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSE  190 (1062)
T ss_pred             chhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCC
Confidence            899999976   33 4556556678999999999998877766667788899999 66777777778887777653211 


Q ss_pred             -----eeEEEEecCCC----------------C---------eEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEe
Q 004603          631 -----YSLRTFTGHST----------------T---------VMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK  680 (743)
Q Consensus       631 -----~~l~~l~~h~~----------------~---------V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~  680 (743)
                           ..+..-..|.+                .         ...++|+|.-+++++.. ....+.|+|++-..|+.+..
T Consensus       191 p~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~-~prellv~dle~~~~l~vvp  269 (1062)
T KOG1912|consen  191 PDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFIT-FPRELLVFDLEYECCLAVVP  269 (1062)
T ss_pred             CCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEE-eccceEEEcchhhceeEEEE
Confidence                 11111112221                1         11356788766655433 35689999999888887776


Q ss_pred             ccCc----eeeecCCC--EEEEEecCCeEEEEe
Q 004603          681 VCNL----MPIILKGC--FILNSIFNCYLLLHR  707 (743)
Q Consensus       681 ~~~~----i~~s~~g~--~l~sgs~Dg~I~vh~  707 (743)
                      ....    +.+.|+++  .+++...||.+.+|.
T Consensus       270 ier~~akfv~vlP~~~rd~LfclH~nG~ltirv  302 (1062)
T KOG1912|consen  270 IERGGAKFVDVLPDPRRDALFCLHSNGRLTIRV  302 (1062)
T ss_pred             eccCCcceeEeccCCCcceEEEEecCCeEEEEE
Confidence            5433    45666654  689999999998864

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=97.62  E-value=0.011  Score=73.12  Aligned_cols=178  Identities=14%  Similarity=0.144  Sum_probs=105.2

Q ss_pred             eEEEEEcCCCCEEEEEeC---CCcEEEEECCCCeEEEEE----cccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 004603          558 VESCHFSPDGKLLATGGH---DKKAVLWCTESFTVKSTL----EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD  630 (743)
Q Consensus       558 V~siafspdg~~LaSgs~---Dg~V~IWd~~t~~~i~~l----~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~  630 (743)
                      -.+++|.|.|++||+.-.   ...|.+|- ++|-.-..|    ......|..+.|++++..||....|. |.+|-..+-.
T Consensus       259 e~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYH  336 (928)
T PF04762_consen  259 EGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYH  336 (928)
T ss_pred             cCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCE
Confidence            457899999999999864   33455554 333322222    23456799999999999999977665 9999887754


Q ss_pred             eeEE-EEec-CCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEE--eccCceeeecCCCEEEEEecCCeEEE-
Q 004603          631 YSLR-TFTG-HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF--KVCNLMPIILKGCFILNSIFNCYLLL-  705 (743)
Q Consensus       631 ~~l~-~l~~-h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~--~~~~~i~~s~~g~~l~sgs~Dg~I~v-  705 (743)
                      .-++ .+.- ....+..+.|+|..+..|...+.++.+.++++.-......-  ....++....||+.+........+.- 
T Consensus       337 WYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPP  416 (928)
T PF04762_consen  337 WYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPP  416 (928)
T ss_pred             EEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCc
Confidence            3222 2321 22345569999998887777777677777665421111000  00122344455555444433322211 


Q ss_pred             ------EecccceEEEEecCCCCEEEEEeCCCeEEEeC
Q 004603          706 ------HRIFLNLLSVSEWCNPDEISTSSWKDSCCSHR  737 (743)
Q Consensus       706 ------h~~~v~~l~v~~~~~~~~laSgs~DG~V~iWd  737 (743)
                            -........+.+..++..+++...||.|.+|.
T Consensus       417 PMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~  454 (928)
T PF04762_consen  417 PMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYE  454 (928)
T ss_pred             hHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEE
Confidence                  11112233333333355688899999888886

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=97.59  E-value=6.1e-05  Score=87.06  Aligned_cols=149  Identities=19%  Similarity=0.201  Sum_probs=110.6

Q ss_pred             eeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeC-CC-eE
Q 004603          544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DR-TV  621 (743)
Q Consensus       544 ~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~-Dg-~V  621 (743)
                      .++..++|+.|+...+||+|+-+.++|+.|+..|.|++|++.+|........|...|+.|.=+.+|...++.+. .. ..
T Consensus      1090 RFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1090 RFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred             hcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchH
Confidence            45667788899999999999999999999999999999999999999999999999999987778877665544 33 57


Q ss_pred             EEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEE-ecc-------CceeeecCCCE
Q 004603          622 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF-KVC-------NLMPIILKGCF  693 (743)
Q Consensus       622 rvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~-~~~-------~~i~~s~~g~~  693 (743)
                      -+|++.....++++|.+    ..++.|+.....-++.+. ...+.|||+.++..+.++ .+.       +...|+|+...
T Consensus      1170 aLW~~~s~~~~~Hsf~e----d~~vkFsn~~q~r~~gt~-~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~L 1244 (1516)
T KOG1832|consen 1170 ALWDASSTGGPRHSFDE----DKAVKFSNSLQFRALGTE-ADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTL 1244 (1516)
T ss_pred             HHhccccccCccccccc----cceeehhhhHHHHHhccc-ccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcce
Confidence            89998764444555553    456788765333333333 346899999998766553 221       33557777776


Q ss_pred             EEEE
Q 004603          694 ILNS  697 (743)
Q Consensus       694 l~sg  697 (743)
                      |+.-
T Consensus      1245 Ilnd 1248 (1516)
T KOG1832|consen 1245 ILND 1248 (1516)
T ss_pred             EeeC
Confidence            6543

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=97.58  E-value=0.011  Score=65.66  Aligned_cols=157  Identities=10%  Similarity=0.023  Sum_probs=103.9

Q ss_pred             CCeEEEEEcCCC--CEEEE-----EeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeC-----------
Q 004603          556 SKVESCHFSPDG--KLLAT-----GGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-----------  617 (743)
Q Consensus       556 ~~V~siafspdg--~~LaS-----gs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~-----------  617 (743)
                      ..|....|+|.+  ..||.     .+.++.++||.+.....+.+-.-....=..+.|++.|++|+.--.           
T Consensus       174 ~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfg  253 (561)
T COG5354         174 VGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFG  253 (561)
T ss_pred             cceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceec
Confidence            458888999953  33443     356788999998765555433222222246778888876643211           


Q ss_pred             CCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEE-EEEeCCCcEEEEECCCCeeeEEEec--cCceeeecCCCEE
Q 004603          618 DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLL-CSCDNNSEIRYWSINNGSCAGVFKV--CNLMPIILKGCFI  694 (743)
Q Consensus       618 Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL-~Sgs~Dg~IrvWDl~tg~~v~~~~~--~~~i~~s~~g~~l  694 (743)
                      ...+.++++....+  .......++|.+++|.|.+..+. ++|-.+..+.++|++.. .+..+..  .+.+.|+|.++|+
T Consensus       254 esnLyl~~~~e~~i--~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~Pe~~rNT~~fsp~~r~i  330 (561)
T COG5354         254 ESNLYLLRITERSI--PVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFPEQKRNTIFFSPHERYI  330 (561)
T ss_pred             cceEEEEeeccccc--ceeccccccceeeeecccCCceeEEecccccceeecccccc-eEEecCCcccccccccCcccEE
Confidence            34578888885443  33335678999999999877654 45567889999999966 4444432  3557899999999


Q ss_pred             EEEecC---CeEEEEecccceEEE
Q 004603          695 LNSIFN---CYLLLHRIFLNLLSV  715 (743)
Q Consensus       695 ~sgs~D---g~I~vh~~~v~~l~v  715 (743)
                      +.++.|   |.+.+|+...+...+
T Consensus       331 l~agF~nl~gni~i~~~~~rf~~~  354 (561)
T COG5354         331 LFAGFDNLQGNIEIFDPAGRFKVA  354 (561)
T ss_pred             EEecCCccccceEEeccCCceEEE
Confidence            998776   456676665544443

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=97.56  E-value=0.042  Score=57.10  Aligned_cols=142  Identities=15%  Similarity=0.178  Sum_probs=91.1

Q ss_pred             EEEEEcC-CCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEc-CCCCEEEEEeCCCeEEEEECCCCCee-EEE
Q 004603          559 ESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS-PSLSRLATSSADRTVRVWDTENPDYS-LRT  635 (743)
Q Consensus       559 ~siafsp-dg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafs-p~~~~LaSgs~Dg~VrvWDl~~~~~~-l~~  635 (743)
                      .+++|.+ ++.++++-...+.|..|+..++.... +....  ...+++. ++ ..|+.+..++ +.++|+.++... +..
T Consensus         3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~-g~l~v~~~~~-~~~~d~~~g~~~~~~~   77 (246)
T PF08450_consen    3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPD-GRLYVADSGG-IAVVDPDTGKVTVLAD   77 (246)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTT-SEEEEEETTC-EEEEETTTTEEEEEEE
T ss_pred             cceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccC-CEEEEEEcCc-eEEEecCCCcEEEEee
Confidence            3688998 77788887788999999998876543 32222  6677777 56 4555555544 455598876532 122


Q ss_pred             Ee--c-CCCCeEEEEEecCCCcEEEEEeCC--------CcEEEEECCCCeeeEEEe---ccCceeeecCCCEEEE-EecC
Q 004603          636 FT--G-HSTTVMSLDFHPSKEDLLCSCDNN--------SEIRYWSINNGSCAGVFK---VCNLMPIILKGCFILN-SIFN  700 (743)
Q Consensus       636 l~--~-h~~~V~sl~fsp~g~~lL~Sgs~D--------g~IrvWDl~tg~~v~~~~---~~~~i~~s~~g~~l~s-gs~D  700 (743)
                      ..  . ....++++++.|+|. ++++....        |.|..++.. ++......   ..+.+++++++..|+. -+..
T Consensus        78 ~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~  155 (246)
T PF08450_consen   78 LPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFN  155 (246)
T ss_dssp             EETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTT
T ss_pred             ccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchheeeccccc
Confidence            21  1 335688999999987 66565533        557888877 55443333   3466999999997764 4556


Q ss_pred             CeEEEEe
Q 004603          701 CYLLLHR  707 (743)
Q Consensus       701 g~I~vh~  707 (743)
                      +.|...+
T Consensus       156 ~~i~~~~  162 (246)
T PF08450_consen  156 GRIWRFD  162 (246)
T ss_dssp             TEEEEEE
T ss_pred             ceeEEEe
Confidence            6655543

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.49  E-value=0.012  Score=68.85  Aligned_cols=189  Identities=12%  Similarity=0.089  Sum_probs=114.2

Q ss_pred             CEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCC-eEEEEEcCCCCEEEEEeCCCc-----EE
Q 004603          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK-VESCHFSPDGKLLATGGHDKK-----AV  580 (743)
Q Consensus       507 ~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~-V~siafspdg~~LaSgs~Dg~-----V~  580 (743)
                      ..|+-|+.||.|.+.                    ...+..+..+..+... |..+....+..+|++-+.|+.     |+
T Consensus        36 ~~vvigt~~G~V~~L--------------------n~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llk   95 (933)
T KOG2114|consen   36 GSVVIGTADGRVVIL--------------------NSSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLK   95 (933)
T ss_pred             ceEEEeeccccEEEe--------------------cccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEE
Confidence            578889999888887                    2234455666776666 444433334467888777754     89


Q ss_pred             EEECCCC------eEE--EEEcc-----cCCCEEEEEEcCCCCEEEEEeCCCeEEEEE--CCCCCee-EEEEecCCCCeE
Q 004603          581 LWCTESF------TVK--STLEE-----HTQWITDVRFSPSLSRLATSSADRTVRVWD--TENPDYS-LRTFTGHSTTVM  644 (743)
Q Consensus       581 IWd~~t~------~~i--~~l~~-----H~~~V~~vafsp~~~~LaSgs~Dg~VrvWD--l~~~~~~-l~~l~~h~~~V~  644 (743)
                      |||++..      .++  ..+.+     ...++.+++.+.+-..+|+|-.||.|.++.  +...+.. ......-..+|+
T Consensus        96 iw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pIT  175 (933)
T KOG2114|consen   96 IWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPIT  175 (933)
T ss_pred             EecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCce
Confidence            9998642      233  12222     256788999999988999999999999984  3221211 222223457899


Q ss_pred             EEEEecCCCcEEEEEeCCCcEEEEECCCCeee-EEEecc--Cc--eeeecCCCE-EEEEecCCeEEEEecccceEEEEec
Q 004603          645 SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA-GVFKVC--NL--MPIILKGCF-ILNSIFNCYLLLHRIFLNLLSVSEW  718 (743)
Q Consensus       645 sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v-~~~~~~--~~--i~~s~~g~~-l~sgs~Dg~I~vh~~~v~~l~v~~~  718 (743)
                      .+.|..++.-+++.+. -..|.+|.+....+. ..+..+  +.  ..++ ++.+ +++++. ..+.+++......++.+.
T Consensus       176 gL~~~~d~~s~lFv~T-t~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~-~~t~qfIca~~-e~l~fY~sd~~~~cfaf~  252 (933)
T KOG2114|consen  176 GLALRSDGKSVLFVAT-TEQVMLYSLSGRTPSLKVLDNNGISLNCSSFS-DGTYQFICAGS-EFLYFYDSDGRGPCFAFE  252 (933)
T ss_pred             eeEEecCCceeEEEEe-cceeEEEEecCCCcceeeeccCCccceeeecC-CCCccEEEecC-ceEEEEcCCCcceeeeec
Confidence            9999988876444444 347999999844322 223322  11  2222 3333 444333 346666666655555554

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=97.49  E-value=0.014  Score=72.21  Aligned_cols=183  Identities=11%  Similarity=0.077  Sum_probs=117.2

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEE----ECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004603          553 ASTSKVESCHFSPDGKLLATGGHDKKAVLW----CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN  628 (743)
Q Consensus       553 ~H~~~V~siafspdg~~LaSgs~Dg~V~IW----d~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~  628 (743)
                      ...+.|.++.|-++...++.+..+|.|.++    |..+... .....-...|.|++|+||+..|+..+.+++|.+.+-.=
T Consensus        73 ~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~-E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~f  151 (928)
T PF04762_consen   73 DPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEI-EIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDF  151 (928)
T ss_pred             CCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCcee-EEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccc
Confidence            345779999999999999999999999999    5554332 22222356799999999999999998899887764210


Q ss_pred             -------------CC-eeE---------------------------------EEEecCCCCeEEEEEecCCCcEEEEEe-
Q 004603          629 -------------PD-YSL---------------------------------RTFTGHSTTVMSLDFHPSKEDLLCSCD-  660 (743)
Q Consensus       629 -------------~~-~~l---------------------------------~~l~~h~~~V~sl~fsp~g~~lL~Sgs-  660 (743)
                                   +. ..+                                 ..+. +.+.-..|+|-.||.++.++.- 
T Consensus       152 d~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~  230 (928)
T PF04762_consen  152 DPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVE  230 (928)
T ss_pred             eEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEE
Confidence                         00 000                                 0011 2334567899999986655443 


Q ss_pred             -CC---CcEEEEECCCCeeeEEEec----cCceeeecCCCEEEEEec---CCeEEE-------Ee--------cccceEE
Q 004603          661 -NN---SEIRYWSINNGSCAGVFKV----CNLMPIILKGCFILNSIF---NCYLLL-------HR--------IFLNLLS  714 (743)
Q Consensus       661 -~D---g~IrvWDl~tg~~v~~~~~----~~~i~~s~~g~~l~sgs~---Dg~I~v-------h~--------~~v~~l~  714 (743)
                       .+   ..||||+-+ |....+...    ...++|-|.|++|++.-.   ...|.+       |.        ....+..
T Consensus       231 ~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~  309 (928)
T PF04762_consen  231 PETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIE  309 (928)
T ss_pred             cCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeE
Confidence             22   579999966 665444432    245789999999998754   222333       11        1123344


Q ss_pred             EEecCCCCEEEEEeCCCeEEEeCCC
Q 004603          715 VSEWCNPDEISTSSWKDSCCSHREL  739 (743)
Q Consensus       715 v~~~~~~~~laSgs~DG~V~iWd~~  739 (743)
                      +.+.++...|+..-.|. |.+|-..
T Consensus       310 l~Wn~ds~iLAv~~~~~-vqLWt~~  333 (928)
T PF04762_consen  310 LAWNSDSEILAVWLEDR-VQLWTRS  333 (928)
T ss_pred             EEECCCCCEEEEEecCC-ceEEEee
Confidence            44444466676655554 9999544

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=97.45  E-value=0.018  Score=63.96  Aligned_cols=172  Identities=18%  Similarity=0.150  Sum_probs=110.6

Q ss_pred             ccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEe-----------CCCcEEEEECCCCeEEEEEcccCCCE
Q 004603          532 RVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGG-----------HDKKAVLWCTESFTVKSTLEEHTQWI  600 (743)
Q Consensus       532 ~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs-----------~Dg~V~IWd~~t~~~i~~l~~H~~~V  600 (743)
                      ...+++....+........++..   =..+.|.+.|++|+.--           .+..+.|+++.. ..+....+-.+.|
T Consensus       202 a~~~i~sIp~~s~l~tk~lfk~~---~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e-~~i~V~~~~~~pV  277 (561)
T COG5354         202 AMVRILSIPKNSVLVTKNLFKVS---GVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITE-RSIPVEKDLKDPV  277 (561)
T ss_pred             cEEEEEEccCCCeeeeeeeEeec---ccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecc-cccceeccccccc
Confidence            34444444444333333333322   23577888887655321           124566777663 3333333568899


Q ss_pred             EEEEEcCCCCEEEEEe--CCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEe--CCCcEEEEECCCC-ee
Q 004603          601 TDVRFSPSLSRLATSS--ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD--NNSEIRYWSINNG-SC  675 (743)
Q Consensus       601 ~~vafsp~~~~LaSgs--~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs--~Dg~IrvWDl~tg-~~  675 (743)
                      ...+|.|.++.|++++  .+-.+.++|++..   ++ +......=..+.|+|.++++|+.|-  .-|.|-+||.... ++
T Consensus       278 hdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N---l~-~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~  353 (561)
T COG5354         278 HDFTWEPLSSRFAVISGYMPASVSVFDLRGN---LR-FYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKV  353 (561)
T ss_pred             eeeeecccCCceeEEecccccceeecccccc---eE-EecCCcccccccccCcccEEEEecCCccccceEEeccCCceEE
Confidence            9999999888776655  5889999999864   22 2233445567889999988886543  2367999998765 45


Q ss_pred             eEEEeccC--ceeeecCCCEEEEEec------CCeEEEEecccc
Q 004603          676 AGVFKVCN--LMPIILKGCFILNSIF------NCYLLLHRIFLN  711 (743)
Q Consensus       676 v~~~~~~~--~i~~s~~g~~l~sgs~------Dg~I~vh~~~v~  711 (743)
                      +..+.+..  .+.|+|+|.|+.+...      |..+++|+....
T Consensus       354 ~~~~~~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~  397 (561)
T COG5354         354 AGAFNGLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGA  397 (561)
T ss_pred             EEEeecCCceEeeccCCceEEEecCCCcccccCcceEEEEecCc
Confidence            54666543  3569999999887743      777888887653

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.41  E-value=0.031  Score=62.57  Aligned_cols=170  Identities=9%  Similarity=-0.057  Sum_probs=99.6

Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEE-EEEcC--CCCEEEEEeCCCeEEEEECCCCCeeEEEEecCC--C
Q 004603          567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITD-VRFSP--SLSRLATSSADRTVRVWDTENPDYSLRTFTGHS--T  641 (743)
Q Consensus       567 g~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~-vafsp--~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~--~  641 (743)
                      +..++.+..++.|..+|..+++.+-.+......+.. ..-+|  .+..++.++.++.|..+|..+++. +....-..  .
T Consensus       160 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~-~W~~~~~~~~~  238 (394)
T PRK11138        160 DGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQL-IWQQRISQPTG  238 (394)
T ss_pred             CCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEccCChh-hheeccccCCC
Confidence            345667778899999999999987666432111100 00122  134577778899999999988764 33221100  0


Q ss_pred             -----CeEEEEEec--CCCcEEEEEeCCCcEEEEECCCCeeeEEEeccCceeeecCCCEEEEEecCCeEEEEecccceEE
Q 004603          642 -----TVMSLDFHP--SKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNLMPIILKGCFILNSIFNCYLLLHRIFLNLLS  714 (743)
Q Consensus       642 -----~V~sl~fsp--~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~~~i~~s~~g~~l~sgs~Dg~I~vh~~~v~~l~  714 (743)
                           ....+...|  .+..++ .++.++.+..+|+.+|+.+..............+..++.++.++.+...+.......
T Consensus       239 ~~~~~~~~~~~~sP~v~~~~vy-~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~vy~~~~~g~l~ald~~tG~~~  317 (394)
T PRK11138        239 ATEIDRLVDVDTTPVVVGGVVY-ALAYNGNLVALDLRSGQIVWKREYGSVNDFAVDGGRIYLVDQNDRVYALDTRGGVEL  317 (394)
T ss_pred             ccchhcccccCCCcEEECCEEE-EEEcCCeEEEEECCCCCEEEeecCCCccCcEEECCEEEEEcCCCeEEEEECCCCcEE
Confidence                 001111112  133344 566789999999999988766543322223445667777777777766444322222


Q ss_pred             EEec-----------CCCCEEEEEeCCCeEEEeCC
Q 004603          715 VSEW-----------CNPDEISTSSWKDSCCSHRE  738 (743)
Q Consensus       715 v~~~-----------~~~~~laSgs~DG~V~iWd~  738 (743)
                      |...           ...+.|+.++.||.|++.|.
T Consensus       318 W~~~~~~~~~~~sp~v~~g~l~v~~~~G~l~~ld~  352 (394)
T PRK11138        318 WSQSDLLHRLLTAPVLYNGYLVVGDSEGYLHWINR  352 (394)
T ss_pred             EcccccCCCcccCCEEECCEEEEEeCCCEEEEEEC
Confidence            2111           11568888999999887764

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.38  E-value=0.026  Score=60.27  Aligned_cols=140  Identities=14%  Similarity=0.139  Sum_probs=96.9

Q ss_pred             eEEEEEcC-CCCEEEEEeCCCc-EEEEECCCCeEEEEEcccCCCE--EEEEEcCCCCEEEEEe-----CCCeEEEEECCC
Q 004603          558 VESCHFSP-DGKLLATGGHDKK-AVLWCTESFTVKSTLEEHTQWI--TDVRFSPSLSRLATSS-----ADRTVRVWDTEN  628 (743)
Q Consensus       558 V~siafsp-dg~~LaSgs~Dg~-V~IWd~~t~~~i~~l~~H~~~V--~~vafsp~~~~LaSgs-----~Dg~VrvWDl~~  628 (743)
                      ...++.+| ++..++.+-.-|+ ..+||+.+++....+....+.-  -..+|++||++|++.=     ..|.|-|||+..
T Consensus         7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~   86 (305)
T PF07433_consen    7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAAR   86 (305)
T ss_pred             ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcC
Confidence            34678888 6667778877776 6789999998887775544332  2467999999998863     367899999995


Q ss_pred             CCeeEEEEecCCCCeEEEEEecCCCcEEEEEe-----------------CCCcEEEEECCCCeeeEEEec----c----C
Q 004603          629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD-----------------NNSEIRYWSINNGSCAGVFKV----C----N  683 (743)
Q Consensus       629 ~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs-----------------~Dg~IrvWDl~tg~~v~~~~~----~----~  683 (743)
                      .-..+.++..|.-....|.+.|+|+.|++.-+                 -+-.+.+.|..+|+.+.....    +    .
T Consensus        87 ~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiR  166 (305)
T PF07433_consen   87 GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIR  166 (305)
T ss_pred             CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcccccccee
Confidence            55557788888777888999999976665432                 112566667788887766443    1    2


Q ss_pred             ceeeecCCCEEEEE
Q 004603          684 LMPIILKGCFILNS  697 (743)
Q Consensus       684 ~i~~s~~g~~l~sg  697 (743)
                      .+++..+|..++..
T Consensus       167 HLa~~~~G~V~~a~  180 (305)
T PF07433_consen  167 HLAVDGDGTVAFAM  180 (305)
T ss_pred             eEEecCCCcEEEEE
Confidence            24555555544444

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=97.38  E-value=0.0019  Score=66.28  Aligned_cols=136  Identities=11%  Similarity=-0.091  Sum_probs=87.4

Q ss_pred             CCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEec----cC
Q 004603          608 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKV----CN  683 (743)
Q Consensus       608 ~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~----~~  683 (743)
                      ...+|+.|+.-|.+.+|...+..........|...|+-+.=.-+...-+.-++.|.+++++++.-+.....+..    ..
T Consensus        83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~n  162 (344)
T KOG4532|consen   83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQN  162 (344)
T ss_pred             cccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeecccccee
Confidence            35688999999999999998765434444434433322211111112233577788888888775433222221    34


Q ss_pred             ceeeecCCCEEEEEecCCeEEEEecc---------------cceEEEEecCCCCEEEEEeCCCeEEEeCCCcccC
Q 004603          684 LMPIILKGCFILNSIFNCYLLLHRIF---------------LNLLSVSEWCNPDEISTSSWKDSCCSHRELYLYT  743 (743)
Q Consensus       684 ~i~~s~~g~~l~sgs~Dg~I~vh~~~---------------v~~l~v~~~~~~~~laSgs~DG~V~iWd~~~~~t  743 (743)
                      .+.+++++.|+++.+....|-.+.+.               ...++.++......+|++.-||+|.|||-+|.-|
T Consensus       163 s~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~t  237 (344)
T KOG4532|consen  163 SLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMAT  237 (344)
T ss_pred             eeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEeccccc
Confidence            57788999999988877666553222               2334455555577899999999999999998754

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.34  E-value=0.00083  Score=76.05  Aligned_cols=94  Identities=16%  Similarity=0.168  Sum_probs=77.7

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEE-EEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEE
Q 004603          556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWIT-DVRFSPSLSRLATSSADRTVRVWDTENPDYSLR  634 (743)
Q Consensus       556 ~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~-~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~  634 (743)
                      -.|.-+.|+|...+||++..+|.|.+..+. ...+.++.-|...|+ +++|.|||+.|+.|-.||+|++.|+.++.....
T Consensus        21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~   99 (665)
T KOG4640|consen   21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS   99 (665)
T ss_pred             cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence            347889999999999999999999999887 777888887777777 999999999999999999999999998776333


Q ss_pred             EEecCCCCeEEEEEec
Q 004603          635 TFTGHSTTVMSLDFHP  650 (743)
Q Consensus       635 ~l~~h~~~V~sl~fsp  650 (743)
                      ........|.++-|.+
T Consensus       100 ~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen  100 FLFSVETDISKGIWDR  115 (665)
T ss_pred             cccccccchheeeccc
Confidence            2233455677777764

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=97.30  E-value=0.02  Score=69.44  Aligned_cols=113  Identities=19%  Similarity=0.252  Sum_probs=73.7

Q ss_pred             EEEEEcCCCCEEEEE-----eCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEe---CCCeEEEEECCCCC
Q 004603          559 ESCHFSPDGKLLATG-----GHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS---ADRTVRVWDTENPD  630 (743)
Q Consensus       559 ~siafspdg~~LaSg-----s~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs---~Dg~VrvWDl~~~~  630 (743)
                      +.|+|--||.+||+.     ...++|+|||-+ +..-.+-+.-.+.=.+++|-|.|..+++-.   .|+.|.+|.-. |-
T Consensus       199 ~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErN-GL  276 (1265)
T KOG1920|consen  199 TSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERN-GL  276 (1265)
T ss_pred             ceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecC-Cc
Confidence            469999999999883     333899999976 433322222233446899999999887764   36678888733 22


Q ss_pred             e---eEEEEecCCCCeEEEEEecCCCcEEEE---EeCCCcEEEEECCCCe
Q 004603          631 Y---SLRTFTGHSTTVMSLDFHPSKEDLLCS---CDNNSEIRYWSINNGS  674 (743)
Q Consensus       631 ~---~l~~l~~h~~~V~sl~fsp~g~~lL~S---gs~Dg~IrvWDl~tg~  674 (743)
                      .   .+..+......|..|+|+.++. +|+.   +.....|++|-+.+..
T Consensus       277 ~hg~f~l~~p~de~~ve~L~Wns~sd-iLAv~~~~~e~~~v~lwt~~Nyh  325 (1265)
T KOG1920|consen  277 RHGEFVLPFPLDEKEVEELAWNSNSD-ILAVVTSNLENSLVQLWTTGNYH  325 (1265)
T ss_pred             cccccccCCcccccchheeeecCCCC-ceeeeecccccceEEEEEecCeE
Confidence            1   0111222233489999999876 5544   4444459999988764

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.29  E-value=0.00011  Score=82.75  Aligned_cols=182  Identities=11%  Similarity=0.056  Sum_probs=124.7

Q ss_pred             CCCeEEEEEcC--CCCEEEEEeCCCcEEEEECCCCeE--EEEEcccCCCEEEEEEcC-CCCEEEEEeC----CCeEEEEE
Q 004603          555 TSKVESCHFSP--DGKLLATGGHDKKAVLWCTESFTV--KSTLEEHTQWITDVRFSP-SLSRLATSSA----DRTVRVWD  625 (743)
Q Consensus       555 ~~~V~siafsp--dg~~LaSgs~Dg~V~IWd~~t~~~--i~~l~~H~~~V~~vafsp-~~~~LaSgs~----Dg~VrvWD  625 (743)
                      +-.+.|+++.-  +...++.|..+|.|.+-.++...-  -.+..+|...+++++|++ |.+.||.|-.    |..+.|||
T Consensus        56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd  135 (783)
T KOG1008|consen   56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD  135 (783)
T ss_pred             CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence            34477888765  445889999999999988765321  334567888999999998 5667777643    67899999


Q ss_pred             CCCCC----eeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCe-eeEEE--eccCceeeec-CCCEEEEE
Q 004603          626 TENPD----YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVF--KVCNLMPIIL-KGCFILNS  697 (743)
Q Consensus       626 l~~~~----~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~-~v~~~--~~~~~i~~s~-~g~~l~sg  697 (743)
                      +.+.-    .......+......++||..+. .++.+|.....|+++|+|... ....+  +.+..+.+.| .+.|+++.
T Consensus       136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~-klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~  214 (783)
T KOG1008|consen  136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDT-KLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSN  214 (783)
T ss_pred             cccccCCCccccccccccccCccccccccCc-chhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceecc
Confidence            97641    1111112244567789999664 477789988899999999321 11111  2355677887 77787776


Q ss_pred             ecCCeEEEEecc--------------------cceEEEEecCCCCEEEEEeCCC-eEEEeCCC
Q 004603          698 IFNCYLLLHRIF--------------------LNLLSVSEWCNPDEISTSSWKD-SCCSHREL  739 (743)
Q Consensus       698 s~Dg~I~vh~~~--------------------v~~l~v~~~~~~~~laSgs~DG-~V~iWd~~  739 (743)
                      . |+.|.+|+..                    +..+++++.. .+.++++..|. +|+.+|-.
T Consensus       215 ~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtr-tglla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  215 S-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTR-TGLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             c-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCC-cchhhhhccCcceEEEeccc
Confidence            6 8999998821                    3467777776 67777777654 78877644

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.29  E-value=0.056  Score=60.49  Aligned_cols=165  Identities=9%  Similarity=-0.008  Sum_probs=97.0

Q ss_pred             CEEEEEeCCCcEEEEECCCCeEEEEEcccCC-------CEEEEEEcC--CCCEEEEEeCCCeEEEEECCCCCeeEEEEec
Q 004603          568 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQ-------WITDVRFSP--SLSRLATSSADRTVRVWDTENPDYSLRTFTG  638 (743)
Q Consensus       568 ~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~-------~V~~vafsp--~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~  638 (743)
                      ..++.++.++.+..+|..+++.+-.......       ....+..+|  .+..++.++.++.+..+|+.+++. +.... 
T Consensus       206 ~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~-~W~~~-  283 (394)
T PRK11138        206 GGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQI-VWKRE-  283 (394)
T ss_pred             CEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCE-EEeec-
Confidence            3566677889999999988876544321100       011111233  255677788899999999998875 33322 


Q ss_pred             CCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEeccC-c--eeeecCCCEEEEEecCCeEEEEecccceEEE
Q 004603          639 HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCN-L--MPIILKGCFILNSIFNCYLLLHRIFLNLLSV  715 (743)
Q Consensus       639 h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~~-~--i~~s~~g~~l~sgs~Dg~I~vh~~~v~~l~v  715 (743)
                       ......+...  +..++ .++.|+.|..+|..+|+.+....... .  ..-...+.+|+.++.||.+.+.+.....+.+
T Consensus       284 -~~~~~~~~~~--~~~vy-~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~~g~l~v~~~~G~l~~ld~~tG~~~~  359 (394)
T PRK11138        284 -YGSVNDFAVD--GGRIY-LVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLYNGYLVVGDSEGYLHWINREDGRFVA  359 (394)
T ss_pred             -CCCccCcEEE--CCEEE-EEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEECCEEEEEeCCCEEEEEECCCCCEEE
Confidence             1112223332  33344 56679999999999998765443211 1  1111246677888888888764432222111


Q ss_pred             E-----------ecCCCCEEEEEeCCCeEEEeCC
Q 004603          716 S-----------EWCNPDEISTSSWKDSCCSHRE  738 (743)
Q Consensus       716 ~-----------~~~~~~~laSgs~DG~V~iWd~  738 (743)
                      .           +...++.|+.++.||.|+.++.
T Consensus       360 ~~~~~~~~~~s~P~~~~~~l~v~t~~G~l~~~~~  393 (394)
T PRK11138        360 QQKVDSSGFLSEPVVADDKLLIQARDGTVYAITR  393 (394)
T ss_pred             EEEcCCCcceeCCEEECCEEEEEeCCceEEEEeC
Confidence            1           1112568888999999887754

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.21  E-value=0.0037  Score=72.58  Aligned_cols=135  Identities=16%  Similarity=0.149  Sum_probs=91.5

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEE
Q 004603          555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR  634 (743)
Q Consensus       555 ~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~  634 (743)
                      .+.++|++++  +++|+-|..+|.|++++... .+ .+...|+..      +-+|.+++||+.||+|.|..+.+... ..
T Consensus        39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~-~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~-~~  107 (846)
T KOG2066|consen   39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQG-NP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDE-IT  107 (846)
T ss_pred             hhHHHHHHhh--cceeeeccccceEEEEecCC-cc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcc-ce
Confidence            3558888885  67999999999999999753 33 344445543      55799999999999999999888765 33


Q ss_pred             EEecCCCCeEEEEEecC----CCcEEEEEeCCCcEEEEECCCCeeeE--EEec--cCceeeecCCCEEEEEecCCe
Q 004603          635 TFTGHSTTVMSLDFHPS----KEDLLCSCDNNSEIRYWSINNGSCAG--VFKV--CNLMPIILKGCFILNSIFNCY  702 (743)
Q Consensus       635 ~l~~h~~~V~sl~fsp~----g~~lL~Sgs~Dg~IrvWDl~tg~~v~--~~~~--~~~i~~s~~g~~l~sgs~Dg~  702 (743)
                      ++. -..++.+|+++|+    ....+++|+.-| +.++.-+--....  .+..  ....++.-.|.+++-++.+|.
T Consensus       108 ~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~g~lIAWand~Gv  181 (846)
T KOG2066|consen  108 QYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWRGNLIAWANDDGV  181 (846)
T ss_pred             eEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEecCcEEEEecCCCc
Confidence            333 3467899999998    223566888777 7776543211111  1111  122445667788887777764

>smart00320 WD40 WD40 repeats

Probab=97.21  E-value=0.001  Score=45.56  Aligned_cols=39  Identities=41%  Similarity=0.578  Sum_probs=34.6

Q ss_pred             CeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 004603          587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD  625 (743)
Q Consensus       587 ~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWD  625 (743)
                      ++++..+..|...|.+++|++.+..+++++.|+.|++||
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            355677778999999999999889999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=97.19  E-value=0.041  Score=57.46  Aligned_cols=109  Identities=7%  Similarity=-0.014  Sum_probs=63.4

Q ss_pred             CceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEE
Q 004603          481 SKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVES  560 (743)
Q Consensus       481 ~~s~~~fs~dg~~~l~~~~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~s  560 (743)
                      .-+-+.|+||+               .+++.....|+|++|+.....-......      ..       ....-+..|..
T Consensus        45 QWRkl~WSpD~---------------tlLa~a~S~G~i~vfdl~g~~lf~I~p~------~~-------~~~d~~~Aiag   96 (282)
T PF15492_consen   45 QWRKLAWSPDC---------------TLLAYAESTGTIRVFDLMGSELFVIPPA------MS-------FPGDLSDAIAG   96 (282)
T ss_pred             hheEEEECCCC---------------cEEEEEcCCCeEEEEecccceeEEcCcc------cc-------cCCccccceee
Confidence            55678888888               4888888899999996543211000000      00       00112344666


Q ss_pred             EEEcCC------CCEEEEEeCCCcEEEEECCC-----CeEEEEE--cc-cCCCEEEEEEcCCCCEEEEEeC
Q 004603          561 CHFSPD------GKLLATGGHDKKAVLWCTES-----FTVKSTL--EE-HTQWITDVRFSPSLSRLATSSA  617 (743)
Q Consensus       561 iafspd------g~~LaSgs~Dg~V~IWd~~t-----~~~i~~l--~~-H~~~V~~vafsp~~~~LaSgs~  617 (743)
                      +.|.+-      ...|++-..+|.++-|-+..     .....+|  .. +...|.++.|+|..++|+.|+.
T Consensus        97 l~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~  167 (282)
T PF15492_consen   97 LIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGC  167 (282)
T ss_pred             eEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEecc
Confidence            666441      12355556777777665422     2223333  22 4678999999998888777664

>smart00320 WD40 WD40 repeats

Probab=97.19  E-value=0.00098  Score=45.68  Aligned_cols=38  Identities=37%  Similarity=0.575  Sum_probs=33.8

Q ss_pred             eeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004603          546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC  583 (743)
Q Consensus       546 ~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd  583 (743)
                      .....+..|...|.++.|++++.++++++.|+.|++||
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            34566778999999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=97.18  E-value=0.0026  Score=70.95  Aligned_cols=133  Identities=17%  Similarity=0.190  Sum_probs=91.4

Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeC-----------CCeEEEEECC
Q 004603          559 ESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-----------DRTVRVWDTE  627 (743)
Q Consensus       559 ~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~-----------Dg~VrvWDl~  627 (743)
                      +-+.|||.|.+|+|-..-| |.+|--.+...++.|. |.+ |.-+.|+|+.++|+|=+.           ...++|||++
T Consensus       214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp~-Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~  290 (698)
T KOG2314|consen  214 TYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-HPG-VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIA  290 (698)
T ss_pred             eeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-CCC-ceeeecCCccceEEEecCCccccCcccCCCceEEEEEcc
Confidence            4689999999999988665 8899887777666664 654 889999999999998764           2568999999


Q ss_pred             CCCeeEEEEecC--CCCe-EEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeE----EEeccCceeeecCCCEEEEE
Q 004603          628 NPDYSLRTFTGH--STTV-MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG----VFKVCNLMPIILKGCFILNS  697 (743)
Q Consensus       628 ~~~~~l~~l~~h--~~~V-~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~----~~~~~~~i~~s~~g~~l~sg  697 (743)
                      ++.. .+.|...  ...+ .-+.|+-|+. +++.-. ...|.||+..+-..+.    .+.+...+.++|.+..|+-.
T Consensus       291 tG~l-krsF~~~~~~~~~WP~frWS~DdK-y~Arm~-~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYw  364 (698)
T KOG2314|consen  291 TGLL-KRSFPVIKSPYLKWPIFRWSHDDK-YFARMT-GNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYW  364 (698)
T ss_pred             ccch-hcceeccCCCccccceEEeccCCc-eeEEec-cceEEEEecCceeeecccccCCccccCcccCCCcceEEEE
Confidence            9875 5555431  1222 3468888876 443333 3579999877644331    12233445666666655544

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.15  E-value=0.011  Score=67.05  Aligned_cols=172  Identities=13%  Similarity=0.190  Sum_probs=94.2

Q ss_pred             eeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEE-CCCC
Q 004603          551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD-TENP  629 (743)
Q Consensus       551 l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWD-l~~~  629 (743)
                      +....-....+.++|+|+++++++ ||.-.|+.....+....     +.....+|.+. ..+|+-....+|.++. +...
T Consensus        28 lg~~~~~p~~ls~npngr~v~V~g-~geY~iyt~~~~r~k~~-----G~g~~~vw~~~-n~yAv~~~~~~I~I~kn~~~~  100 (443)
T PF04053_consen   28 LGSCEIYPQSLSHNPNGRFVLVCG-DGEYEIYTALAWRNKAF-----GSGLSFVWSSR-NRYAVLESSSTIKIYKNFKNE  100 (443)
T ss_dssp             EEE-SS--SEEEE-TTSSEEEEEE-TTEEEEEETTTTEEEEE-----EE-SEEEE-TS-SEEEEE-TTS-EEEEETTEE-
T ss_pred             CCCCCcCCeeEEECCCCCEEEEEc-CCEEEEEEccCCccccc-----CceeEEEEecC-ccEEEEECCCeEEEEEcCccc
Confidence            334444578999999999998854 78888888555444332     22346778884 5577777789999963 3221


Q ss_pred             CeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEecc--CceeeecCCCEEEEEecCCeEEEEe
Q 004603          630 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVC--NLMPIILKGCFILNSIFNCYLLLHR  707 (743)
Q Consensus       630 ~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~--~~i~~s~~g~~l~sgs~Dg~I~vh~  707 (743)
                      .  ...+.- ...+..|-.   |. +|+..+ ++.|.+||..+++.++.+...  ..+.|+++|.+++..+.+....+ +
T Consensus       101 ~--~k~i~~-~~~~~~If~---G~-LL~~~~-~~~i~~yDw~~~~~i~~i~v~~vk~V~Ws~~g~~val~t~~~i~il-~  171 (443)
T PF04053_consen  101 V--VKSIKL-PFSVEKIFG---GN-LLGVKS-SDFICFYDWETGKLIRRIDVSAVKYVIWSDDGELVALVTKDSIYIL-K  171 (443)
T ss_dssp             T--T------SS-EEEEE----SS-SEEEEE-TTEEEEE-TTT--EEEEESS-E-EEEEE-TTSSEEEEE-S-SEEEE-E
T ss_pred             c--ceEEcC-CcccceEEc---Cc-EEEEEC-CCCEEEEEhhHcceeeEEecCCCcEEEEECCCCEEEEEeCCeEEEE-E
Confidence            1  122221 122444433   55 443444 347999999999999999865  46889999999999987755444 2


Q ss_pred             cccc------------eEEEEecCCCCEEEEEeCCCeEEEeCCC
Q 004603          708 IFLN------------LLSVSEWCNPDEISTSSWKDSCCSHREL  739 (743)
Q Consensus       708 ~~v~------------~l~v~~~~~~~~laSgs~DG~V~iWd~~  739 (743)
                      ....            .+.+...- ...+-||-|++.|.+|.+.
T Consensus       172 ~~~~~~~~~~~~g~e~~f~~~~E~-~~~IkSg~W~~d~fiYtT~  214 (443)
T PF04053_consen  172 YNLEAVAAIPEEGVEDAFELIHEI-SERIKSGCWVEDCFIYTTS  214 (443)
T ss_dssp             E-HHHHHHBTTTB-GGGEEEEEEE--S--SEEEEETTEEEEE-T
T ss_pred             ecchhcccccccCchhceEEEEEe-cceeEEEEEEcCEEEEEcC
Confidence            2222            33332210 3468888888888777543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>smart00667 LisH Lissencephaly type-1-like homology motif

Probab=97.08  E-value=0.00076  Score=47.32  Aligned_cols=31  Identities=29%  Similarity=0.476  Sum_probs=28.2

Q ss_pred             HHHHHHHHHHHhhcCChHHHHHHHHhcCCCC
Q 004603            9 DKMLDVYIYDYLLKRKLHASAKAFQTEGKVS   39 (743)
Q Consensus         9 ~~~l~~yiy~yl~k~~~~~~A~~~~~e~~~~   39 (743)
                      +..|+..|++||.+.||.++|++|.+|.++.
T Consensus         3 ~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~~   33 (34)
T smart00667        3 RSELNRLILEYLLRNGYEETAETLQKESGLS   33 (34)
T ss_pred             HHHHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence            5678999999999999999999999998764

Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=97.06  E-value=0.017  Score=63.34  Aligned_cols=105  Identities=14%  Similarity=0.179  Sum_probs=77.6

Q ss_pred             eCCCcEEEEECCCC--eEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCC----CCe-e---------EEEEe
Q 004603          574 GHDKKAVLWCTESF--TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN----PDY-S---------LRTFT  637 (743)
Q Consensus       574 s~Dg~V~IWd~~t~--~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~----~~~-~---------l~~l~  637 (743)
                      -.++.|.|+|-...  +....-.-|..+|.++.+++.++.+++....|.|..|....    ++. .         +..+.
T Consensus       119 ~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~  198 (558)
T KOG0882|consen  119 FKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFP  198 (558)
T ss_pred             ccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhccc
Confidence            45788999986543  23333456999999999999999999999999999999872    110 0         11222


Q ss_pred             cCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEE
Q 004603          638 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF  679 (743)
Q Consensus       638 ~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~  679 (743)
                      .......+++|+|++.. +.+-..|..||++++++|+.+..+
T Consensus       199 K~Kt~pts~Efsp~g~q-istl~~DrkVR~F~~KtGklvqei  239 (558)
T KOG0882|consen  199 KAKTEPTSFEFSPDGAQ-ISTLNPDRKVRGFVFKTGKLVQEI  239 (558)
T ss_pred             ccccCccceEEccccCc-ccccCcccEEEEEEeccchhhhhh
Confidence            34466789999999874 446668999999999999866554

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.03  E-value=0.54  Score=52.72  Aligned_cols=164  Identities=16%  Similarity=0.133  Sum_probs=97.4

Q ss_pred             eeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEE--cc------cCCCEEEEEEcC-----CC-
Q 004603          544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL--EE------HTQWITDVRFSP-----SL-  609 (743)
Q Consensus       544 ~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l--~~------H~~~V~~vafsp-----~~-  609 (743)
                      .+.+...+....++|++|+.| |=-++|.|..+|.+.|.|++....+..-  ..      ....|+++.|.-     |+ 
T Consensus        75 gf~P~~l~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~y  153 (395)
T PF08596_consen   75 GFLPLTLLDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGY  153 (395)
T ss_dssp             EEEEEEEE---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSS
T ss_pred             ccCchhheeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcc
Confidence            466777788889999999997 5669999999999999999887776542  22      245688888863     22 


Q ss_pred             --CEEEEEeCCCeEEEEECCC---CCeeE---EEEecCCCCeEEEE-EecC--------------------CCcEEEEEe
Q 004603          610 --SRLATSSADRTVRVWDTEN---PDYSL---RTFTGHSTTVMSLD-FHPS--------------------KEDLLCSCD  660 (743)
Q Consensus       610 --~~LaSgs~Dg~VrvWDl~~---~~~~l---~~l~~h~~~V~sl~-fsp~--------------------g~~lL~Sgs  660 (743)
                        -++++|...|.+.+|.+.-   +...+   .....+.+.|..++ |+.+                    .+.+++.++
T Consensus       154 SSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS  233 (395)
T PF08596_consen  154 SSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS  233 (395)
T ss_dssp             EEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-
T ss_pred             cceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc
Confidence              3688999999999998752   12211   12224566676665 3221                    123555565


Q ss_pred             CCCcEEEEECCCCeeeEEEecc----Cceee-----ecCCCEEEEEecCCeEEEEecc
Q 004603          661 NNSEIRYWSINNGSCAGVFKVC----NLMPI-----ILKGCFILNSIFNCYLLLHRIF  709 (743)
Q Consensus       661 ~Dg~IrvWDl~tg~~v~~~~~~----~~i~~-----s~~g~~l~sgs~Dg~I~vh~~~  709 (743)
                       +..|||+...+.+..+.....    ..+.+     ...+..|++-..+|.+++....
T Consensus       234 -e~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP  290 (395)
T PF08596_consen  234 -ESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLP  290 (395)
T ss_dssp             -SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETT
T ss_pred             -ccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECC
Confidence             668999999988776655422    11233     2356778888999999996654

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.02  E-value=0.022  Score=51.68  Aligned_cols=102  Identities=22%  Similarity=0.236  Sum_probs=68.2

Q ss_pred             eEEEEEcC---CC-CEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeE
Q 004603          558 VESCHFSP---DG-KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL  633 (743)
Q Consensus       558 V~siafsp---dg-~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l  633 (743)
                      |+++++..   || +.|++|+.|..||||+-+  +.+..+.+ ++.|++++-... ..|+.+..+|+|-+|+-...   +
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~R---l   74 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDRSQR---L   74 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeCcce---e
Confidence            56666654   33 479999999999999854  56666665 455777766554 67999999999999985431   3


Q ss_pred             EEEecCCCCeEEEEEe---cCCCcEEEEEeCCCcEEE
Q 004603          634 RTFTGHSTTVMSLDFH---PSKEDLLCSCDNNSEIRY  667 (743)
Q Consensus       634 ~~l~~h~~~V~sl~fs---p~g~~lL~Sgs~Dg~Irv  667 (743)
                      ...+.. ..++++++.   -+|..-|++|-.+|.|-+
T Consensus        75 WRiKSK-~~~~~~~~~D~~gdG~~eLI~GwsnGkve~  110 (111)
T PF14783_consen   75 WRIKSK-NQVTSMAFYDINGDGVPELIVGWSNGKVEV  110 (111)
T ss_pred             eeeccC-CCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence            333332 335555543   344445668887887643

>PRK02888 nitrous-oxide reductase; Validated

Probab=96.97  E-value=0.026  Score=65.47  Aligned_cols=129  Identities=16%  Similarity=0.118  Sum_probs=86.5

Q ss_pred             CCCCEEEEEeCCCcEEEEECCC-----CeEEEEEcccCCCEEEEEEcCCCCEEEEEeC-CCeEEEEECCCCCe-------
Q 004603          565 PDGKLLATGGHDKKAVLWCTES-----FTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTENPDY-------  631 (743)
Q Consensus       565 pdg~~LaSgs~Dg~V~IWd~~t-----~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~-Dg~VrvWDl~~~~~-------  631 (743)
                      ++|++...+  +++|.+.|..+     .+.+..+.. ......|+++|||+++++++. +.+|.|.|+.+.+.       
T Consensus       286 kdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yIPV-GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~  362 (635)
T PRK02888        286 KAGKFKTIG--GSKVPVVDGRKAANAGSALTRYVPV-PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIK  362 (635)
T ss_pred             hCCCEEEEC--CCEEEEEECCccccCCcceEEEEEC-CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCC
Confidence            367766553  67899999987     344544433 455788999999998876654 99999999987442       


Q ss_pred             ---e-EEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCC----------CeeeEEEecc-----Cc----eeee
Q 004603          632 ---S-LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN----------GSCAGVFKVC-----NL----MPII  688 (743)
Q Consensus       632 ---~-l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~t----------g~~v~~~~~~-----~~----i~~s  688 (743)
                         + +.... -.......+|.++|. .++|...|..|..||+..          ...+..+..|     ..    -...
T Consensus       363 ~~~~vvaeve-vGlGPLHTaFDg~G~-aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~  440 (635)
T PRK02888        363 PRDAVVAEPE-LGLGPLHTAFDGRGN-AYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKE  440 (635)
T ss_pred             ccceEEEeec-cCCCcceEEECCCCC-EEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCC
Confidence               1 11111 123345678998875 788889999999999876          2333333322     11    1235


Q ss_pred             cCCCEEEEEe
Q 004603          689 LKGCFILNSI  698 (743)
Q Consensus       689 ~~g~~l~sgs  698 (743)
                      ++|+||++..
T Consensus       441 ~dgk~l~~~n  450 (635)
T PRK02888        441 ADGKWLVSLN  450 (635)
T ss_pred             CCCCEEEEcc
Confidence            8999998864

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=96.96  E-value=0.00058  Score=79.29  Aligned_cols=122  Identities=16%  Similarity=0.153  Sum_probs=98.4

Q ss_pred             CeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCC-cE
Q 004603          587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS-EI  665 (743)
Q Consensus       587 ~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg-~I  665 (743)
                      .+..++|+.|+...+|++|+-+.++|+.|+..|.|++|++.++.. .....+|.+.|+-|.=+.+|..+|.+++... ..
T Consensus      1091 Fr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~-e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSM-EESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred             cccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccc-cccccccccccccccccCCcceeeeeccccCchH
Confidence            456678889999999999999999999999999999999999876 6677889999999999999988776666555 57


Q ss_pred             EEEECCC-CeeeEEEeccCceeeecCCCEEEEEecCCeEEEEecc
Q 004603          666 RYWSINN-GSCAGVFKVCNLMPIILKGCFILNSIFNCYLLLHRIF  709 (743)
Q Consensus       666 rvWDl~t-g~~v~~~~~~~~i~~s~~g~~l~sgs~Dg~I~vh~~~  709 (743)
                      -+|++.. +..+++|.....+.|+....+-+.|.......+++..
T Consensus      1170 aLW~~~s~~~~~Hsf~ed~~vkFsn~~q~r~~gt~~d~a~~YDvq 1214 (1516)
T KOG1832|consen 1170 ALWDASSTGGPRHSFDEDKAVKFSNSLQFRALGTEADDALLYDVQ 1214 (1516)
T ss_pred             HHhccccccCccccccccceeehhhhHHHHHhcccccceEEEecc
Confidence            7899864 6677888888888888766666666655556665543

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.91  E-value=0.084  Score=54.46  Aligned_cols=113  Identities=9%  Similarity=-0.042  Sum_probs=79.1

Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEE
Q 004603          567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL  646 (743)
Q Consensus       567 g~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl  646 (743)
                      .++++.|+..+.+.--|..+++.+-.-. -..+|.+-+.- -+++++.|+..|.+++.+..++.. ...+......=...
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~-~w~f~~~~~vk~~a   99 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQ-IWNFVILETVKVRA   99 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhh-eeeeeehhhhccce
Confidence            4578899999999999998887653221 12334333222 477899999999999999999865 34443222211223


Q ss_pred             EEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEeccC
Q 004603          647 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCN  683 (743)
Q Consensus       647 ~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~~  683 (743)
                      ...+++. ++..++.|+..+..|.++..|+...+...
T Consensus       100 ~~d~~~g-lIycgshd~~~yalD~~~~~cVykskcgG  135 (354)
T KOG4649|consen  100 QCDFDGG-LIYCGSHDGNFYALDPKTYGCVYKSKCGG  135 (354)
T ss_pred             EEcCCCc-eEEEecCCCcEEEecccccceEEecccCC
Confidence            3455654 77799999999999999999998877543

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=96.90  E-value=0.11  Score=63.35  Aligned_cols=181  Identities=13%  Similarity=0.124  Sum_probs=113.7

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECC----CCC
Q 004603          555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE----NPD  630 (743)
Q Consensus       555 ~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~----~~~  630 (743)
                      .+.|.++.|.-+..-++.+..+|.|.+.|..+..... ..--...|.+++|+||...++-.+.+.+|.+-+-.    ...
T Consensus        68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~ei-vg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~  146 (1265)
T KOG1920|consen   68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEI-VGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEK  146 (1265)
T ss_pred             CcceEEEEEecccceEEEEecCCcEEEEcccccceee-eeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhcc
Confidence            3579999999999999999999999999987754332 22235679999999999999888888887765421    000


Q ss_pred             e----------e--------EEEEecC---------------------CCCeEEEEEecCCCcEEEEE---eCC-CcEEE
Q 004603          631 Y----------S--------LRTFTGH---------------------STTVMSLDFHPSKEDLLCSC---DNN-SEIRY  667 (743)
Q Consensus       631 ~----------~--------l~~l~~h---------------------~~~V~sl~fsp~g~~lL~Sg---s~D-g~Irv  667 (743)
                      .          .        -..|.|.                     .+.=++|+|--||.++.++.   -.+ +.|+|
T Consensus       147 ~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV  226 (1265)
T KOG1920|consen  147 PLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRV  226 (1265)
T ss_pred             ccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEE
Confidence            0          0        0112111                     11224589998987544422   234 78999


Q ss_pred             EECCCCeeeEE----EeccCceeeecCCCEEEEE---ecCCeEEE-------Ee-------cc---cceEEEEecCCCCE
Q 004603          668 WSINNGSCAGV----FKVCNLMPIILKGCFILNS---IFNCYLLL-------HR-------IF---LNLLSVSEWCNPDE  723 (743)
Q Consensus       668 WDl~tg~~v~~----~~~~~~i~~s~~g~~l~sg---s~Dg~I~v-------h~-------~~---v~~l~v~~~~~~~~  723 (743)
                      ||.+ |..-.+    -...+.+.+-|.|..+++-   +.|+.|.+       |.       ..   +..+.|..+  ...
T Consensus       227 ~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~--sdi  303 (1265)
T KOG1920|consen  227 YDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSN--SDI  303 (1265)
T ss_pred             eccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCC--CCc
Confidence            9987 432111    1123457788999988875   34555655       11       11   345556555  445


Q ss_pred             EEE---EeCCCeEEEeCCC
Q 004603          724 IST---SSWKDSCCSHREL  739 (743)
Q Consensus       724 laS---gs~DG~V~iWd~~  739 (743)
                      ++.   ......|++|-..
T Consensus       304 LAv~~~~~e~~~v~lwt~~  322 (1265)
T KOG1920|consen  304 LAVVTSNLENSLVQLWTTG  322 (1265)
T ss_pred             eeeeecccccceEEEEEec
Confidence            555   4555569999654

>PRK02888 nitrous-oxide reductase; Validated

Probab=96.85  E-value=0.029  Score=65.12  Aligned_cols=91  Identities=8%  Similarity=0.022  Sum_probs=67.3

Q ss_pred             CCeEEEEECCC----CCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCee------------eEEEec
Q 004603          618 DRTVRVWDTEN----PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC------------AGVFKV  681 (743)
Q Consensus       618 Dg~VrvWDl~~----~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~------------v~~~~~  681 (743)
                      ++.|.+.|.++    +.. +..+..-......++++|||.++++++..+.+|.|+|+.+.+.            +.....
T Consensus       295 gn~V~VID~~t~~~~~~~-v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev  373 (635)
T PRK02888        295 GSKVPVVDGRKAANAGSA-LTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL  373 (635)
T ss_pred             CCEEEEEECCccccCCcc-eEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc
Confidence            56799999887    333 3333334567889999999999999999999999999987552            222221


Q ss_pred             ---cCceeeecCCCEEEEEecCCeEEEEecc
Q 004603          682 ---CNLMPIILKGCFILNSIFNCYLLLHRIF  709 (743)
Q Consensus       682 ---~~~i~~s~~g~~l~sgs~Dg~I~vh~~~  709 (743)
                         .-...|..+|....+-..|..|..|+..
T Consensus       374 GlGPLHTaFDg~G~aytslf~dsqv~kwn~~  404 (635)
T PRK02888        374 GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIE  404 (635)
T ss_pred             CCCcceEEECCCCCEEEeEeecceeEEEehH
Confidence               2236688888877788889888888854

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=96.83  E-value=0.0046  Score=71.82  Aligned_cols=109  Identities=15%  Similarity=0.238  Sum_probs=83.9

Q ss_pred             EEEEEcCCCCEEEEEeC----CCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEE
Q 004603          559 ESCHFSPDGKLLATGGH----DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR  634 (743)
Q Consensus       559 ~siafspdg~~LaSgs~----Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~  634 (743)
                      +-+.|+|...+|++++.    .|.|.||- ++|++-+..+. .-.+++++|||..-.|++|-.-|.+.+|...+.+. -.
T Consensus        19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~-P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~-ht   95 (1416)
T KOG3617|consen   19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTY-PVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTET-HT   95 (1416)
T ss_pred             cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccccc-ceehhhhccChHHHHHhhccccceeEEEecCCcee-ee
Confidence            34679999999988863    57788873 66665543321 23367799999888889998899999999876443 34


Q ss_pred             EEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECC
Q 004603          635 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN  671 (743)
Q Consensus       635 ~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~  671 (743)
                      ....|...|..+.|+++|. .++++..-|.|.+|...
T Consensus        96 v~~th~a~i~~l~wS~~G~-~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   96 VVETHPAPIQGLDWSHDGT-VLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             eccCCCCCceeEEecCCCC-eEEEcCCCceeEEEEee
Confidence            4456999999999999987 55599999999999765

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=96.77  E-value=0.0006  Score=77.12  Aligned_cols=114  Identities=19%  Similarity=0.388  Sum_probs=82.1

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcC-CCCEEEEEeCCCeEEEEE-CCCCCeeE
Q 004603          556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWD-TENPDYSL  633 (743)
Q Consensus       556 ~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp-~~~~LaSgs~Dg~VrvWD-l~~~~~~l  633 (743)
                      ..+.+++|..+.++|.+|...+.|+++|++- .+...-.-.+..|..+.+.| .+.++++-. ||.|-+|| .++-+.++
T Consensus       155 ~gqns~cwlrd~klvlaGm~sr~~~ifdlRq-s~~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl  232 (783)
T KOG1008|consen  155 DGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQ-SLDSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPL  232 (783)
T ss_pred             cCccccccccCcchhhcccccchhhhhhhhh-hhhhhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHH
Confidence            4466888988889999999999999999872 11112222344566677788 677887765 99999999 55544444


Q ss_pred             EEEecCCC----CeEEEEEecCCCcEEEEEeCC-CcEEEEECC
Q 004603          634 RTFTGHST----TVMSLDFHPSKEDLLCSCDNN-SEIRYWSIN  671 (743)
Q Consensus       634 ~~l~~h~~----~V~sl~fsp~g~~lL~Sgs~D-g~IrvWDl~  671 (743)
                      ..+...+.    .+..++|+|....++++++.| ++|+.+|+.
T Consensus       233 ~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  233 QIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             HHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence            44332222    489999999988888888876 579999986

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.73  E-value=0.16  Score=60.03  Aligned_cols=129  Identities=11%  Similarity=0.116  Sum_probs=89.9

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC--C--CeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004603          554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTE--S--FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP  629 (743)
Q Consensus       554 H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~--t--~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~  629 (743)
                      ...++.+++++.+-+.+|+|-.||.|..+.-+  .  +........-..+|+.+++..++..++-...-..|.+|.+...
T Consensus       124 ~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr  203 (933)
T KOG2114|consen  124 NPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGR  203 (933)
T ss_pred             CCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCC
Confidence            35678999999999999999999999988432  1  2212222223578999999888776444444678999998854


Q ss_pred             CeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEe-ccCc
Q 004603          630 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-VCNL  684 (743)
Q Consensus       630 ~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~-~~~~  684 (743)
                      ...+.++..|...+.|..|++....++|++  +..|.+||......-..|. ++..
T Consensus       204 ~p~~~~ld~~G~~lnCss~~~~t~qfIca~--~e~l~fY~sd~~~~cfaf~~g~kk  257 (933)
T KOG2114|consen  204 TPSLKVLDNNGISLNCSSFSDGTYQFICAG--SEFLYFYDSDGRGPCFAFEVGEKK  257 (933)
T ss_pred             CcceeeeccCCccceeeecCCCCccEEEec--CceEEEEcCCCcceeeeecCCCeE
Confidence            433555777888899999988755466444  3579999988655545555 4443

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=96.69  E-value=0.41  Score=50.14  Aligned_cols=192  Identities=11%  Similarity=0.089  Sum_probs=102.6

Q ss_pred             EEeeCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCeEEEEEccc-CCCEEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 004603          549 QLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTESFTVKSTLEEH-TQWITDVRFSPSLSRLATSSADRTVRVWDT  626 (743)
Q Consensus       549 ~~l~~H~~~V~siafspd-g~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H-~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl  626 (743)
                      ..+.+-...|..|+|+|+ ++++++....+.|..++.+ ++.++.+.-. .+..-.|++..++.++++.-.++.+.++++
T Consensus        15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~   93 (248)
T PF06977_consen   15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTI   93 (248)
T ss_dssp             EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE
T ss_pred             eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEE
Confidence            445555566999999996 4577777778888888864 7777776433 355788898877777776666999999988


Q ss_pred             CCCC--ee---EEEEe-----cCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCC---CeeeEEEe------------c
Q 004603          627 ENPD--YS---LRTFT-----GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN---GSCAGVFK------------V  681 (743)
Q Consensus       627 ~~~~--~~---l~~l~-----~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~t---g~~v~~~~------------~  681 (743)
                      ....  ..   +..+.     .+...+-.|+|+|.+..++++. +..-.++|.++.   ...+....            .
T Consensus        94 ~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~k-E~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  172 (248)
T PF06977_consen   94 DDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAK-ERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRD  172 (248)
T ss_dssp             ----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEE-ESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS-
T ss_pred             eccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEe-CCCChhhEEEccccCccceeeccccccccccceecc
Confidence            4322  11   11121     2445689999999988777654 344556665543   22221111            1


Q ss_pred             cCceeeecCC-CEEEEEecCCeEEEEecccceEEEEecCC----------CCEEEEEeCCCeEEEeCCCccc
Q 004603          682 CNLMPIILKG-CFILNSIFNCYLLLHRIFLNLLSVSEWCN----------PDEISTSSWKDSCCSHRELYLY  742 (743)
Q Consensus       682 ~~~i~~s~~g-~~l~sgs~Dg~I~vh~~~v~~l~v~~~~~----------~~~laSgs~DG~V~iWd~~~~~  742 (743)
                      .+.+.++|.. .+++.......|...+.....+..-.-..          .-.=++-..||+++|-.+..+|
T Consensus       173 ~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEpNlf  244 (248)
T PF06977_consen  173 LSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEPNLF  244 (248)
T ss_dssp             --EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETTTEE
T ss_pred             ccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCCceE
Confidence            1345666654 45555566666666665555444322111          1122344468888887776654

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=96.67  E-value=0.013  Score=67.47  Aligned_cols=136  Identities=13%  Similarity=0.102  Sum_probs=93.3

Q ss_pred             CCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004603          505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT  584 (743)
Q Consensus       505 ~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~  584 (743)
                      .+.+++.|+.-|.+.+|....+..                  ......+..+.+..+..|++..++|.|+..|.|.|+-+
T Consensus        44 t~~~l~~GsS~G~lyl~~R~~~~~------------------~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql  105 (726)
T KOG3621|consen   44 TEEYLAMGSSAGSVYLYNRHTGEM------------------RKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQL  105 (726)
T ss_pred             CCceEEEecccceEEEEecCchhh------------------hcccccCccceEEEEEecchhHhhhhhcCCceEEeehh
Confidence            458999999999999995544320                  11111224455777888999999999999999999876


Q ss_pred             CCCeE-----EEEE-cccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCC---CeeEEEEecCCCCeEEEEEecCCCcE
Q 004603          585 ESFTV-----KSTL-EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP---DYSLRTFTGHSTTVMSLDFHPSKEDL  655 (743)
Q Consensus       585 ~t~~~-----i~~l-~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~---~~~l~~l~~h~~~V~sl~fsp~g~~l  655 (743)
                      ....+     +..+ ..|...|+|++|++++..|++|...|+|.+-.+...   ......+....+.|.-|++.-  .++
T Consensus       106 ~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q--~~L  183 (726)
T KOG3621|consen  106 NKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQ--SYL  183 (726)
T ss_pred             hccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeeccc--cee
Confidence            54221     1111 237889999999999999999999999998887761   112334444556777777653  345


Q ss_pred             EEEEe
Q 004603          656 LCSCD  660 (743)
Q Consensus       656 L~Sgs  660 (743)
                      |++..
T Consensus       184 LVStl  188 (726)
T KOG3621|consen  184 LVSTL  188 (726)
T ss_pred             hHhhh
Confidence            65544

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.66  E-value=0.43  Score=49.42  Aligned_cols=144  Identities=13%  Similarity=0.052  Sum_probs=87.1

Q ss_pred             CCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004603          504 DMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC  583 (743)
Q Consensus       504 ~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd  583 (743)
                      +...++..||+.+.+...+...+.       -.|+..-+             +.|.|-+.- -|++++.|+..+.+++.+
T Consensus        21 dskT~v~igSHs~~~~avd~~sG~-------~~We~ilg-------------~RiE~sa~v-vgdfVV~GCy~g~lYfl~   79 (354)
T KOG4649|consen   21 DSKTLVVIGSHSGIVIAVDPQSGN-------LIWEAILG-------------VRIECSAIV-VGDFVVLGCYSGGLYFLC   79 (354)
T ss_pred             CCceEEEEecCCceEEEecCCCCc-------EEeehhhC-------------ceeeeeeEE-ECCEEEEEEccCcEEEEE
Confidence            335788888888887777554442       12222222             112222221 477899999999999999


Q ss_pred             CCCCeEEEEEcccCCCEE-EEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCC
Q 004603          584 TESFTVKSTLEEHTQWIT-DVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN  662 (743)
Q Consensus       584 ~~t~~~i~~l~~H~~~V~-~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~D  662 (743)
                      +.++.....|..-.. |. .....+++.++..|+.|++.+..|.++.. |+...+.-.+...+-+..|-...+++ +...
T Consensus        80 ~~tGs~~w~f~~~~~-vk~~a~~d~~~glIycgshd~~~yalD~~~~~-cVykskcgG~~f~sP~i~~g~~sly~-a~t~  156 (354)
T KOG4649|consen   80 VKTGSQIWNFVILET-VKVRAQCDFDGGLIYCGSHDGNFYALDPKTYG-CVYKSKCGGGTFVSPVIAPGDGSLYA-AITA  156 (354)
T ss_pred             ecchhheeeeeehhh-hccceEEcCCCceEEEecCCCcEEEecccccc-eEEecccCCceeccceecCCCceEEE-Eecc
Confidence            999977666643322 22 23347789999999999999999999854 46655433333334455553233443 3334


Q ss_pred             CcEEEEECC
Q 004603          663 SEIRYWSIN  671 (743)
Q Consensus       663 g~IrvWDl~  671 (743)
                      |.|---..+
T Consensus       157 G~vlavt~~  165 (354)
T KOG4649|consen  157 GAVLAVTKN  165 (354)
T ss_pred             ceEEEEccC
Confidence            444333333

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=96.56  E-value=0.72  Score=51.53  Aligned_cols=152  Identities=15%  Similarity=0.144  Sum_probs=108.3

Q ss_pred             CeEEEEEcCCCCEEEEEeC---CCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEe-CCCeEEEEECCCCCee
Q 004603          557 KVESCHFSPDGKLLATGGH---DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENPDYS  632 (743)
Q Consensus       557 ~V~siafspdg~~LaSgs~---Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs-~Dg~VrvWDl~~~~~~  632 (743)
                      ....++|+++++.++.+..   +++|.+.|..+.+.+.+...-..+ ..++++|++..++.+. .+++|.+.|...... 
T Consensus       117 ~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v-  194 (381)
T COG3391         117 GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSV-  194 (381)
T ss_pred             CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcce-
Confidence            4678999999987777765   688999998888877765433334 8899999999766555 799999999776432 


Q ss_pred             EEE----EecCCCCeEEEEEecCCCcEEEEEeCC--CcEEEEECCCCeeeEE-Eecc----CceeeecCCCEEEEEecC-
Q 004603          633 LRT----FTGHSTTVMSLDFHPSKEDLLCSCDNN--SEIRYWSINNGSCAGV-FKVC----NLMPIILKGCFILNSIFN-  700 (743)
Q Consensus       633 l~~----l~~h~~~V~sl~fsp~g~~lL~Sgs~D--g~IrvWDl~tg~~v~~-~~~~----~~i~~s~~g~~l~sgs~D-  700 (743)
                      .+.    ...-......+.+.|+|.++.++...+  +.|.+.|..++..... +...    ..+.+.|+|.++.+.... 
T Consensus       195 ~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~  274 (381)
T COG3391         195 VRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQG  274 (381)
T ss_pred             eccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCC
Confidence            210    112223457799999999888777665  6899999998876654 2222    347788999998887444 


Q ss_pred             CeEEEEeccc
Q 004603          701 CYLLLHRIFL  710 (743)
Q Consensus       701 g~I~vh~~~v  710 (743)
                      +.+.+.+...
T Consensus       275 ~~V~vid~~~  284 (381)
T COG3391         275 GTVSVIDGAT  284 (381)
T ss_pred             CeEEEEeCCC
Confidence            6666655443

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=96.52  E-value=0.87  Score=47.74  Aligned_cols=124  Identities=12%  Similarity=0.248  Sum_probs=75.3

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe------EEEEEc-----ccCCCEEEEEEcCCCCEEEEEeCCCeEEEE
Q 004603          556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFT------VKSTLE-----EHTQWITDVRFSPSLSRLATSSADRTVRVW  624 (743)
Q Consensus       556 ~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~------~i~~l~-----~H~~~V~~vafsp~~~~LaSgs~Dg~VrvW  624 (743)
                      +....|++..++.++++.-.++.+.+++++...      ....+.     .+...+-.++|+|.+..|+.+-...-.++|
T Consensus        65 ~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~  144 (248)
T PF06977_consen   65 GDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLY  144 (248)
T ss_dssp             SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEE
T ss_pred             CCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhE
Confidence            447889998888777776668999998883311      111121     244568999999987777777777667777


Q ss_pred             ECCC--CCeeEE--EEe------cCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEe
Q 004603          625 DTEN--PDYSLR--TFT------GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK  680 (743)
Q Consensus       625 Dl~~--~~~~l~--~l~------~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~  680 (743)
                      .+..  ....+.  ...      .....+.+++++|...++++-+..+..|.++| .+|+.+..+.
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~  209 (248)
T PF06977_consen  145 EVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLS  209 (248)
T ss_dssp             EEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE
T ss_pred             EEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEE
Confidence            6653  111121  111      13345789999999888998999999999999 6687776655

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=96.52  E-value=0.063  Score=60.69  Aligned_cols=144  Identities=19%  Similarity=0.138  Sum_probs=91.7

Q ss_pred             eCCCCCeEEEEEcCCCCEEEEEe---CC-CcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEE-EeCCCe--EEEE
Q 004603          552 PASTSKVESCHFSPDGKLLATGG---HD-KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT-SSADRT--VRVW  624 (743)
Q Consensus       552 ~~H~~~V~siafspdg~~LaSgs---~D-g~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaS-gs~Dg~--VrvW  624 (743)
                      ..-...+..-+|+|++..++...   .. ..+.++|+.+++....+. ..+.-..-+|+|||+.|+- ...||.  |.++
T Consensus       189 ~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~  267 (425)
T COG0823         189 TDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLM  267 (425)
T ss_pred             cccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEE
Confidence            33445577788999888655442   22 358889998876544433 2233346689999987754 455665  5555


Q ss_pred             ECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEE--ECCCCeeeEEEe--c--cCceeeecCCCEEEEEe
Q 004603          625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW--SINNGSCAGVFK--V--CNLMPIILKGCFILNSI  698 (743)
Q Consensus       625 Dl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvW--Dl~tg~~v~~~~--~--~~~i~~s~~g~~l~sgs  698 (743)
                      |+....  +..+..-.+.-+.-.|+|+|..++++.+..|.-.||  |++.+.. ..+.  +  .....++|+|.+++..+
T Consensus       268 dl~~~~--~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~SpdG~~i~~~~  344 (425)
T COG0823         268 DLDGKN--LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSPDGDKIVFES  344 (425)
T ss_pred             cCCCCc--ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccCCCCCCEEEEEe
Confidence            776644  333443344444678999999999888888865554  5554443 2222  1  22456889999988776


Q ss_pred             c
Q 004603          699 F  699 (743)
Q Consensus       699 ~  699 (743)
                      .
T Consensus       345 ~  345 (425)
T COG0823         345 S  345 (425)
T ss_pred             c
Confidence            4

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=96.50  E-value=0.14  Score=57.68  Aligned_cols=180  Identities=10%  Similarity=-0.038  Sum_probs=86.9

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe------EEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004603          556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFT------VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP  629 (743)
Q Consensus       556 ~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~------~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~  629 (743)
                      +.|.++.|+.+..+| +-..||++++||+....      .+....-....|.++.+..+|-.+++  .++.|.+..-...
T Consensus        81 ~~iv~~~wt~~e~Lv-vV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt--~~~~~~~v~n~~~  157 (410)
T PF04841_consen   81 GRIVGMGWTDDEELV-VVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVLT--GNNRFYVVNNIDE  157 (410)
T ss_pred             CCEEEEEECCCCeEE-EEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCCEEEEC--CCCeEEEEeCccc
Confidence            789999999866555 55679999999986322      11111111222333333334533333  3444443322111


Q ss_pred             CeeEEEEe----------cCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEeccCceeeecCCCEEEEEec
Q 004603          630 DYSLRTFT----------GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNLMPIILKGCFILNSIF  699 (743)
Q Consensus       630 ~~~l~~l~----------~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~~~i~~s~~g~~l~sgs~  699 (743)
                      ....+.+.          .+........++.+.. +.+....++.|.+.+-...+.+........++++|+|.+++.-..
T Consensus       158 ~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~-~~i~~~~g~~i~~i~~~~~~~i~~~~~i~~iavSpng~~iAl~t~  236 (410)
T PF04841_consen  158 PVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRV-VEILLANGETIYIIDENSFKQIDSDGPIIKIAVSPNGKFIALFTD  236 (410)
T ss_pred             cchhhccccCCCcccccccccccccceEeecCcc-eEEEEecCCEEEEEEccccccccCCCCeEEEEECCCCCEEEEEEC
Confidence            10011110          0111000122333333 223333445566444332211111122345789999999999999


Q ss_pred             CCeEEEEecccceE----EEEecCCCCEEEEEeCCCeEEEeCCC
Q 004603          700 NCYLLLHRIFLNLL----SVSEWCNPDEISTSSWKDSCCSHREL  739 (743)
Q Consensus       700 Dg~I~vh~~~v~~l----~v~~~~~~~~laSgs~DG~V~iWd~~  739 (743)
                      +|.+.+........    .......+..+.=||.|..+..|.+.
T Consensus       237 ~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~l~~~~~  280 (410)
T PF04841_consen  237 SGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVVLSWEDE  280 (410)
T ss_pred             CCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEEEEeCCE
Confidence            99887754433211    11111224566666667777777543

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=96.42  E-value=0.068  Score=64.18  Aligned_cols=136  Identities=13%  Similarity=0.127  Sum_probs=89.0

Q ss_pred             CCCEEEEE-eCCCcEEEEECCCCeEEEEEcccCCC-EEEEEEcCC-------CCEEEEEeCCCeEEEEECCCCCeeEEEE
Q 004603          566 DGKLLATG-GHDKKAVLWCTESFTVKSTLEEHTQW-ITDVRFSPS-------LSRLATSSADRTVRVWDTENPDYSLRTF  636 (743)
Q Consensus       566 dg~~LaSg-s~Dg~V~IWd~~t~~~i~~l~~H~~~-V~~vafsp~-------~~~LaSgs~Dg~VrvWDl~~~~~~l~~l  636 (743)
                      +.++|+.- ...+.|+-.|++.|+.+..+..|... |..+  .|+       ....+.|-.+..|..||.|-....+..-
T Consensus       492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~--~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~  569 (794)
T PF08553_consen  492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDI--APDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDS  569 (794)
T ss_pred             ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEe--cccccccccCCCceEEEECCCceEEeccCCCCCceeec
Confidence            34444443 45678999999999999999988754 5554  442       3345777789999999998754222211


Q ss_pred             ec----CCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEec----cCceeeecCCCEEEEEecCCeEEE
Q 004603          637 TG----HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKV----CNLMPIILKGCFILNSIFNCYLLL  705 (743)
Q Consensus       637 ~~----h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~----~~~i~~s~~g~~l~sgs~Dg~I~v  705 (743)
                      ..    ......|++-..+|  .||.|+.+|.||+||--.......+.+    ...+.++.||+||++.+....+.+
T Consensus       570 ~~k~Y~~~~~Fs~~aTt~~G--~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi  644 (794)
T PF08553_consen  570 QSKQYSSKNNFSCFATTEDG--YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKTYLLLI  644 (794)
T ss_pred             cccccccCCCceEEEecCCc--eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecceEEEE
Confidence            11    22345666666555  578899999999999433222223333    245778899999888776655444

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=96.41  E-value=0.021  Score=65.77  Aligned_cols=115  Identities=16%  Similarity=0.152  Sum_probs=84.0

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEE-EEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCee---
Q 004603          557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS---  632 (743)
Q Consensus       557 ~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~-~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~---  632 (743)
                      .|.--+++..+++++.|+.-|.|++|+-..++... ...+-.+.+..+..+++..++|.|+..|.|.|+-+......   
T Consensus        35 ~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~  114 (726)
T KOG3621|consen   35 RVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLD  114 (726)
T ss_pred             eEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcce
Confidence            34445556688999999999999999976655432 22334445556677888888899999999999987653221   


Q ss_pred             -EE-EEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCC
Q 004603          633 -LR-TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN  672 (743)
Q Consensus       633 -l~-~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~t  672 (743)
                       +. .-+.|...|++++|++++..++ +|..-|.|.+-.+..
T Consensus       115 ~~t~~d~~~~~rVTal~Ws~~~~k~y-sGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  115 YVTPCDKSHKCRVTALEWSKNGMKLY-SGDSQGKVVLTELDS  155 (726)
T ss_pred             eeccccccCCceEEEEEecccccEEe-ecCCCceEEEEEech
Confidence             11 1123778899999999987555 999999999888776

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=96.34  E-value=0.079  Score=63.64  Aligned_cols=99  Identities=10%  Similarity=0.105  Sum_probs=71.8

Q ss_pred             CEEEEEeCCCcEEEEECCCCe-EEEEEcc----cCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCC
Q 004603          568 KLLATGGHDKKAVLWCTESFT-VKSTLEE----HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTT  642 (743)
Q Consensus       568 ~~LaSgs~Dg~V~IWd~~t~~-~i~~l~~----H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~  642 (743)
                      .-.+.|-.++.+..||.+-.. .+..-..    .....+|++-..+ .+||+|+.+|.||+||- .+......+.+-..+
T Consensus       543 e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~-G~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~p  620 (794)
T PF08553_consen  543 EQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTED-GYIAVGSNKGDIRLYDR-LGKRAKTALPGLGDP  620 (794)
T ss_pred             CceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCC-ceEEEEeCCCcEEeecc-cchhhhhcCCCCCCC
Confidence            345677778899999988532 2211111    2345677766555 47999999999999993 344445566677899


Q ss_pred             eEEEEEecCCCcEEEEEeCCCcEEEEEC
Q 004603          643 VMSLDFHPSKEDLLCSCDNNSEIRYWSI  670 (743)
Q Consensus       643 V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl  670 (743)
                      |.+|+.+.||+++|+||.  ..|.+++.
T Consensus       621 I~~iDvt~DGkwilaTc~--tyLlLi~t  646 (794)
T PF08553_consen  621 IIGIDVTADGKWILATCK--TYLLLIDT  646 (794)
T ss_pred             eeEEEecCCCcEEEEeec--ceEEEEEE
Confidence            999999999999998885  67888875

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=96.33  E-value=1.1  Score=51.96  Aligned_cols=105  Identities=6%  Similarity=0.003  Sum_probs=64.6

Q ss_pred             CCCcEEEEECCCCeEEEEEcccCC--------------------CE-EEEEEcCCCCEEEEEeCCC--------------
Q 004603          575 HDKKAVLWCTESFTVKSTLEEHTQ--------------------WI-TDVRFSPSLSRLATSSADR--------------  619 (743)
Q Consensus       575 ~Dg~V~IWd~~t~~~i~~l~~H~~--------------------~V-~~vafsp~~~~LaSgs~Dg--------------  619 (743)
                      .++.|..+|..+++.+-.+.....                    .| ...++++.+..++.++.|+              
T Consensus       173 ~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~  252 (488)
T cd00216         173 VRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDN  252 (488)
T ss_pred             CCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCC
Confidence            467888999999887766543211                    01 1234444566777777665              


Q ss_pred             ----eEEEEECCCCCeeEEEEe--cCCC----CeEEEEEe----cCCC--cEEEEEeCCCcEEEEECCCCeeeEEEe
Q 004603          620 ----TVRVWDTENPDYSLRTFT--GHST----TVMSLDFH----PSKE--DLLCSCDNNSEIRYWSINNGSCAGVFK  680 (743)
Q Consensus       620 ----~VrvWDl~~~~~~l~~l~--~h~~----~V~sl~fs----p~g~--~lL~Sgs~Dg~IrvWDl~tg~~v~~~~  680 (743)
                          .|.-+|+.+++. +..+.  .|..    ......+.    -++.  .+++.++.+|.|...|.++|+.+....
T Consensus       253 ~~~~~l~Ald~~tG~~-~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~  328 (488)
T cd00216         253 LYTDSIVALDADTGKV-KWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARP  328 (488)
T ss_pred             CceeeEEEEcCCCCCE-EEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeE
Confidence                799999998875 44432  1211    10111111    1222  356678889999999999999887765

The alignment model contains an 8-bladed beta-propeller.

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.17  E-value=1.3  Score=49.64  Aligned_cols=115  Identities=17%  Similarity=0.186  Sum_probs=74.5

Q ss_pred             eEEEEEcCCCCEEEEE-eCC----CcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCC-----------eE
Q 004603          558 VESCHFSPDGKLLATG-GHD----KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR-----------TV  621 (743)
Q Consensus       558 V~siafspdg~~LaSg-s~D----g~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg-----------~V  621 (743)
                      +..++++|+|++||.+ +..    .+|+|+|+++++.+........ ...+.|.++++.|+....|.           .|
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~-~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v  204 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPK-FSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV  204 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEE-SEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccc-cceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence            4467889999988765 333    3599999999987653321121 23499999988776554433           37


Q ss_pred             EEEECCCCCee-EEEEecCCCC--eEEEEEecCCCcEEEEEeCCC---cEEEEECCCC
Q 004603          622 RVWDTENPDYS-LRTFTGHSTT--VMSLDFHPSKEDLLCSCDNNS---EIRYWSINNG  673 (743)
Q Consensus       622 rvWDl~~~~~~-l~~l~~h~~~--V~sl~fsp~g~~lL~Sgs~Dg---~IrvWDl~tg  673 (743)
                      ++|++.++... ...+......  ...+..++++.++++......   .|.+.|+..+
T Consensus       205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~  262 (414)
T PF02897_consen  205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG  262 (414)
T ss_dssp             EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred             EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence            88888775432 3445443332  568889999998887665444   4888888874

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=96.06  E-value=0.13  Score=58.32  Aligned_cols=139  Identities=17%  Similarity=0.186  Sum_probs=83.9

Q ss_pred             EEEEEcCCCCEEE-EEeCCCcE--EEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEe-CCCeEEEE--ECCCCCee
Q 004603          559 ESCHFSPDGKLLA-TGGHDKKA--VLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVW--DTENPDYS  632 (743)
Q Consensus       559 ~siafspdg~~La-Sgs~Dg~V--~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs-~Dg~VrvW--Dl~~~~~~  632 (743)
                      ..-+|+|||+.|+ +...|+..  .+.|+.+.. +..+..-.+.-+.-.|+|+|+.|+-.+ ..|.-.||  |++.... 
T Consensus       241 ~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~-~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-  318 (425)
T COG0823         241 GAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKN-LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-  318 (425)
T ss_pred             CCccCCCCCCEEEEEECCCCCccEEEEcCCCCc-ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-
Confidence            3578999998665 44566664  555666655 333544344444678999999876554 46654554  5554433 


Q ss_pred             EEEEecCCCCeEEEEEecCCCcEEEEEeCCCc--EEEEECCCCeeeEEEecc---CceeeecCCCEEEEEecC
Q 004603          633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE--IRYWSINNGSCAGVFKVC---NLMPIILKGCFILNSIFN  700 (743)
Q Consensus       633 l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~--IrvWDl~tg~~v~~~~~~---~~i~~s~~g~~l~sgs~D  700 (743)
                       ..+......-..-.|+|+|+.+++....+|.  |.+.|+.++...+.+...   ....+.++|..++..+..
T Consensus       319 -~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~~~s~~  390 (425)
T COG0823         319 -TRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIMFSSGQ  390 (425)
T ss_pred             -eEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEEEeccC
Confidence             3333233333377899999987766644555  777777766644444432   234577777776655443

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.01  E-value=0.54  Score=53.51  Aligned_cols=104  Identities=13%  Similarity=0.052  Sum_probs=53.0

Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEE-ECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEE
Q 004603          558 VESCHFSPDGKLLATGGHDKKAVLW-CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF  636 (743)
Q Consensus       558 V~siafspdg~~LaSgs~Dg~V~IW-d~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l  636 (743)
                      -..++|.+++ .+|+-...++|+|+ +.+. +....+.. ...+..|-.   |.+|+..+.+ .|.+||+.+++. ++.+
T Consensus        71 g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~-~~~k~i~~-~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~-i~~i  142 (443)
T PF04053_consen   71 GLSFVWSSRN-RYAVLESSSTIKIYKNFKN-EVVKSIKL-PFSVEKIFG---GNLLGVKSSD-FICFYDWETGKL-IRRI  142 (443)
T ss_dssp             -SEEEE-TSS-EEEEE-TTS-EEEEETTEE--TT------SS-EEEEE----SSSEEEEETT-EEEEE-TTT--E-EEEE
T ss_pred             eeEEEEecCc-cEEEEECCCeEEEEEcCcc-ccceEEcC-CcccceEEc---CcEEEEECCC-CEEEEEhhHcce-eeEE
Confidence            4568888844 46666668889996 3321 11112221 112444422   7777776644 899999998664 6666


Q ss_pred             ecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCC
Q 004603          637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG  673 (743)
Q Consensus       637 ~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg  673 (743)
                      .-  ..|..|.|++++..+. -.+ +..|.|++.+..
T Consensus       143 ~v--~~vk~V~Ws~~g~~va-l~t-~~~i~il~~~~~  175 (443)
T PF04053_consen  143 DV--SAVKYVIWSDDGELVA-LVT-KDSIYILKYNLE  175 (443)
T ss_dssp             SS---E-EEEEE-TTSSEEE-EE--S-SEEEEEE-HH
T ss_pred             ec--CCCcEEEEECCCCEEE-EEe-CCeEEEEEecch
Confidence            52  2388999999987544 444 346777765433

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=95.97  E-value=0.026  Score=64.31  Aligned_cols=79  Identities=19%  Similarity=0.240  Sum_probs=65.7

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeE-EEEEecCCCcEEEEEeCCCcEEEEECCCCee
Q 004603          597 TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVM-SLDFHPSKEDLLCSCDNNSEIRYWSINNGSC  675 (743)
Q Consensus       597 ~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~-sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~  675 (743)
                      .-.|.-+.|+|...+||++..+|.|-+..+.- .. +.++.-|...|+ ++||.|||+ +|+.|-.||+|++-|+.++..
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n~-qR-lwtip~p~~~v~~sL~W~~DGk-llaVg~kdG~I~L~Dve~~~~   96 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRLNW-QR-LWTIPIPGENVTASLCWRPDGK-LLAVGFKDGTIRLHDVEKGGR   96 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEecc-ce-eEeccCCCCccceeeeecCCCC-EEEEEecCCeEEEEEccCCCc
Confidence            34578899999999999999999999888873 33 677765666666 999999976 888999999999999999876


Q ss_pred             eEE
Q 004603          676 AGV  678 (743)
Q Consensus       676 v~~  678 (743)
                      +..
T Consensus        97 l~~   99 (665)
T KOG4640|consen   97 LVS   99 (665)
T ss_pred             eec
Confidence            655

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=95.94  E-value=0.26  Score=44.79  Aligned_cols=66  Identities=17%  Similarity=0.145  Sum_probs=48.0

Q ss_pred             EEEEEEcC---C-CCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECC
Q 004603          600 ITDVRFSP---S-LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN  671 (743)
Q Consensus       600 V~~vafsp---~-~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~  671 (743)
                      |+++++..   + .+.|+.|+.|..||+|+-.   ..+..+.. .+.|++|+-...+  .|+.+-.+|+|-+|+-.
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~---e~~~Ei~e-~~~v~~L~~~~~~--~F~Y~l~NGTVGvY~~~   71 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD---EIVAEITE-TDKVTSLCSLGGG--RFAYALANGTVGVYDRS   71 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC---cEEEEEec-ccceEEEEEcCCC--EEEEEecCCEEEEEeCc
Confidence            56666644   3 2579999999999999854   34666653 4668888777653  47788889999999754

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=95.83  E-value=0.69  Score=50.20  Aligned_cols=157  Identities=12%  Similarity=0.069  Sum_probs=92.1

Q ss_pred             cEEEEECCCCeEEEEEccc-CCCEEE---EEEcCC----CCEEEEEeC----------CCeEEEEECCCC-----CeeEE
Q 004603          578 KAVLWCTESFTVKSTLEEH-TQWITD---VRFSPS----LSRLATSSA----------DRTVRVWDTENP-----DYSLR  634 (743)
Q Consensus       578 ~V~IWd~~t~~~i~~l~~H-~~~V~~---vafsp~----~~~LaSgs~----------Dg~VrvWDl~~~-----~~~l~  634 (743)
                      .|+|.|..+.+.+.++.-. ...|++   +.|..+    ..+|+.|..          .|.|.++++...     +..+.
T Consensus         3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i   82 (321)
T PF03178_consen    3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI   82 (321)
T ss_dssp             EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred             EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence            5788888777776655322 223443   334332    456776654          289999999873     11112


Q ss_pred             EEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCe-eeEEEecc---CceeeecCCCEEEEEecCCeEEEE--ec
Q 004603          635 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVFKVC---NLMPIILKGCFILNSIFNCYLLLH--RI  708 (743)
Q Consensus       635 ~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~-~v~~~~~~---~~i~~s~~g~~l~sgs~Dg~I~vh--~~  708 (743)
                      .-....++|++|+-.  +..++++.  ++.|++|++...+ .+..-..+   ....+...+.+++.|.....+.+.  +.
T Consensus        83 ~~~~~~g~V~ai~~~--~~~lv~~~--g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~  158 (321)
T PF03178_consen   83 HSTEVKGPVTAICSF--NGRLVVAV--GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYDE  158 (321)
T ss_dssp             EEEEESS-EEEEEEE--TTEEEEEE--TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEET
T ss_pred             EEEeecCcceEhhhh--CCEEEEee--cCEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEEc
Confidence            223456889999877  33455444  4789999998877 44333222   224455667898888876666652  32


Q ss_pred             cc-------------ceEEEEecCCCCEEEEEeCCCeEEEeCC
Q 004603          709 FL-------------NLLSVSEWCNPDEISTSSWKDSCCSHRE  738 (743)
Q Consensus       709 ~v-------------~~l~v~~~~~~~~laSgs~DG~V~iWd~  738 (743)
                      ..             ...+..+-.+...++.+..+|.|.++..
T Consensus       159 ~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~  201 (321)
T PF03178_consen  159 ENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRY  201 (321)
T ss_dssp             TTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE
T ss_pred             cCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEE
Confidence            11             1222222212348999999999888754

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=95.76  E-value=0.61  Score=53.89  Aligned_cols=110  Identities=9%  Similarity=0.040  Sum_probs=67.8

Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEEEEcccCC------CEE--EEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEec
Q 004603          567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ------WIT--DVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG  638 (743)
Q Consensus       567 g~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~------~V~--~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~  638 (743)
                      +..++.++.|+.|...|..+++.+-.+.....      .+.  .+++. ++..++.++.|+.|+.+|.++++. +..+..
T Consensus        61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~-~W~~~~  138 (488)
T cd00216          61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQ-VWKFGN  138 (488)
T ss_pred             CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCE-eeeecC
Confidence            44566777789999999999887766543222      010  01111 226788888999999999999876 444432


Q ss_pred             CCCC-----e-EEEEEecCCCcEEEEEe---------CCCcEEEEECCCCeeeEEEec
Q 004603          639 HSTT-----V-MSLDFHPSKEDLLCSCD---------NNSEIRYWSINNGSCAGVFKV  681 (743)
Q Consensus       639 h~~~-----V-~sl~fsp~g~~lL~Sgs---------~Dg~IrvWDl~tg~~v~~~~~  681 (743)
                      ....     + .+..+..  . +++.++         .++.|..+|..+|+.+..+..
T Consensus       139 ~~~~~~~~~i~ssP~v~~--~-~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~  193 (488)
T cd00216         139 NDQVPPGYTMTGAPTIVK--K-LVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYT  193 (488)
T ss_pred             CCCcCcceEecCCCEEEC--C-EEEEeccccccccCCCCcEEEEEECCCCceeeEeec
Confidence            2110     1 1222222  2 233332         367899999999998877754

The alignment model contains an 8-bladed beta-propeller.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=95.65  E-value=1.1  Score=50.02  Aligned_cols=145  Identities=14%  Similarity=0.113  Sum_probs=100.5

Q ss_pred             eEEEEEcCCCCE-EEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeC---CCeEEEEECCCCCeeE
Q 004603          558 VESCHFSPDGKL-LATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA---DRTVRVWDTENPDYSL  633 (743)
Q Consensus       558 V~siafspdg~~-LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~---Dg~VrvWDl~~~~~~l  633 (743)
                      -.++++++.++. +++...++.|.+.|..+.+.+....--. ....++|+|++..++.+..   +++|.+.|..+.....
T Consensus        76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~  154 (381)
T COG3391          76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTA  154 (381)
T ss_pred             ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEE
Confidence            457888888874 4444556889999977766555443212 5668899999887766655   6889999988876533


Q ss_pred             EEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeE--------EEeccCceeeecCCCEEEEEecC---Ce
Q 004603          634 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG--------VFKVCNLMPIILKGCFILNSIFN---CY  702 (743)
Q Consensus       634 ~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~--------~~~~~~~i~~s~~g~~l~sgs~D---g~  702 (743)
                      ....+- .+ ..+++.|+|..++++-..++.|.+.|.......+        .......+.+.++|.+++.....   +.
T Consensus       155 ~~~vG~-~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~  232 (381)
T COG3391         155 TIPVGN-TP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNN  232 (381)
T ss_pred             EEecCC-Cc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCce
Confidence            333332 33 8899999999888888889999999987765553        11223447788999876665444   35


Q ss_pred             EEE
Q 004603          703 LLL  705 (743)
Q Consensus       703 I~v  705 (743)
                      +.+
T Consensus       233 v~~  235 (381)
T COG3391         233 VLK  235 (381)
T ss_pred             EEE
Confidence            544

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=95.63  E-value=3.4  Score=44.78  Aligned_cols=149  Identities=13%  Similarity=0.049  Sum_probs=86.9

Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcc----c-CCCEEEEEEcCCCCEEEEEeC-----------CCeE
Q 004603          558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE----H-TQWITDVRFSPSLSRLATSSA-----------DRTV  621 (743)
Q Consensus       558 V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~----H-~~~V~~vafsp~~~~LaSgs~-----------Dg~V  621 (743)
                      +.++..-..+..|+++.  .-+.+++.+++..+..+..    . .....++...|+|.+.++...           -|.|
T Consensus        68 ~~~~~~~d~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~l  145 (307)
T COG3386          68 FSSGALIDAGGRLIACE--HGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSL  145 (307)
T ss_pred             cccceeecCCCeEEEEc--cccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceE
Confidence            44554444454555553  3467777766655333321    1 234567888999887665443           1234


Q ss_pred             EEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCC--C----eeeEEEec-----cCceeeecC
Q 004603          622 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN--G----SCAGVFKV-----CNLMPIILK  690 (743)
Q Consensus       622 rvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~t--g----~~v~~~~~-----~~~i~~s~~  690 (743)
                      +.+|. .+. .++.+..|-..-+.|+|+|++..++++=+..+.|+-|++..  +    +....+..     ...+++..+
T Consensus       146 yr~~p-~g~-~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDad  223 (307)
T COG3386         146 YRVDP-DGG-VVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDAD  223 (307)
T ss_pred             EEEcC-CCC-EEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCC
Confidence            44443 233 25555665666789999999998887877778898888762  2    11111111     244777788


Q ss_pred             CCEEEEEecCC-eEEEEeccc
Q 004603          691 GCFILNSIFNC-YLLLHRIFL  710 (743)
Q Consensus       691 g~~l~sgs~Dg-~I~vh~~~v  710 (743)
                      |++.+++..++ .|.+++...
T Consensus       224 G~lw~~a~~~g~~v~~~~pdG  244 (307)
T COG3386         224 GNLWVAAVWGGGRVVRFNPDG  244 (307)
T ss_pred             CCEEEecccCCceEEEECCCC
Confidence            88776555543 566654443

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.53  E-value=0.37  Score=50.61  Aligned_cols=161  Identities=7%  Similarity=-0.010  Sum_probs=97.5

Q ss_pred             eeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE--------ECCCCeEEEEE--------------c--ccCCC
Q 004603          544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW--------CTESFTVKSTL--------------E--EHTQW  599 (743)
Q Consensus       544 ~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IW--------d~~t~~~i~~l--------------~--~H~~~  599 (743)
                      .+..+.++..|.-.-..+.|.+||+.++.+..  -|..-        ++++.++..++              .  -+.-.
T Consensus       150 ~fqrvgE~~t~GiGpHev~lm~DGrtlvvanG--GIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lS  227 (366)
T COG3490         150 GFQRVGEFSTHGIGPHEVTLMADGRTLVVANG--GIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLS  227 (366)
T ss_pred             ccceecccccCCcCcceeEEecCCcEEEEeCC--ceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcc
Confidence            45667778888877889999999999888743  23322        23333322111              1  23345


Q ss_pred             EEEEEEcCCCCEEEEEeCCCe----EEEEECCCCCeeEEEEe-------cCCCCeEEEEEecCCCcEEEEEeCCCcEEEE
Q 004603          600 ITDVRFSPSLSRLATSSADRT----VRVWDTENPDYSLRTFT-------GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW  668 (743)
Q Consensus       600 V~~vafsp~~~~LaSgs~Dg~----VrvWDl~~~~~~l~~l~-------~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvW  668 (743)
                      |..++..+++..++-|-..|-    --+.-...+..++..+.       .....|-+|+.+.+...+.+++-..+...+|
T Consensus       228 iRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~  307 (366)
T COG3490         228 IRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIW  307 (366)
T ss_pred             eeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEE
Confidence            788888888776665544321    11111111122222222       1224577888887777777788778889999


Q ss_pred             ECCCCeeeEEEeccCceeeecCCCEEEEEecCCeEEEE
Q 004603          669 SINNGSCAGVFKVCNLMPIILKGCFILNSIFNCYLLLH  706 (743)
Q Consensus       669 Dl~tg~~v~~~~~~~~i~~s~~g~~l~sgs~Dg~I~vh  706 (743)
                      |..+|..+..-....+.-+.+...-+++.+.+|.+.+.
T Consensus       308 da~tG~vv~~a~l~daaGva~~~~gf~vssg~G~~~~~  345 (366)
T COG3490         308 DAATGAVVSEAALPDAAGVAAAKGGFAVSSGQGRIIFY  345 (366)
T ss_pred             EcCCCcEEecccccccccceeccCceEEecCCceEEec
Confidence            99999988766655555555555556666666666653

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=95.51  E-value=0.98  Score=48.97  Aligned_cols=121  Identities=11%  Similarity=0.113  Sum_probs=75.1

Q ss_pred             eeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe-EEEEEc-ccCCCEEEEEEcCCCCEEEEEeCCCeE
Q 004603          544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT-VKSTLE-EHTQWITDVRFSPSLSRLATSSADRTV  621 (743)
Q Consensus       544 ~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~-~i~~l~-~H~~~V~~vafsp~~~~LaSgs~Dg~V  621 (743)
                      .++.+... ...++|++|+-- .++ |+.|. .++|.+|++...+ .+..-. .....|+++...  +++|+.|+..+.|
T Consensus        78 ~l~~i~~~-~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv  151 (321)
T PF03178_consen   78 KLKLIHST-EVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSV  151 (321)
T ss_dssp             EEEEEEEE-EESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSE
T ss_pred             EEEEEEEE-eecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCE
Confidence            33444333 346789999876 444 44444 4789999998766 333222 123356666655  5699999988888


Q ss_pred             EEEECCCCCeeEEEEe--cCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECC
Q 004603          622 RVWDTENPDYSLRTFT--GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN  671 (743)
Q Consensus       622 rvWDl~~~~~~l~~l~--~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~  671 (743)
                      .++..+.....+..+.  .....+++++|-+++. .++.++.+|.|.++...
T Consensus       152 ~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~-~~i~~D~~gnl~~l~~~  202 (321)
T PF03178_consen  152 SLLRYDEENNKLILVARDYQPRWVTAAEFLVDED-TIIVGDKDGNLFVLRYN  202 (321)
T ss_dssp             EEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSS-EEEEEETTSEEEEEEE-
T ss_pred             EEEEEEccCCEEEEEEecCCCccEEEEEEecCCc-EEEEEcCCCeEEEEEEC
Confidence            8775543222233222  2345688999987765 77789999999998765

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PRK13616 lipoprotein LpqB; Provisional

Probab=95.42  E-value=0.75  Score=54.30  Aligned_cols=141  Identities=12%  Similarity=0.083  Sum_probs=79.1

Q ss_pred             CCeEEEEEcCCCCEEEEEe------CCCcEEEEECC-CCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCC-CeEEEE---
Q 004603          556 SKVESCHFSPDGKLLATGG------HDKKAVLWCTE-SFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD-RTVRVW---  624 (743)
Q Consensus       556 ~~V~siafspdg~~LaSgs------~Dg~V~IWd~~-t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~D-g~VrvW---  624 (743)
                      ..|.+.+++|+|+.++..-      .|+.-.||-.. .+.....+.+.  ..+.-.|+|+|..|++.... ..+++.   
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~~~  427 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIRDP  427 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecCC--CCCCceECCCCCceEEEecCcceEEEeccC
Confidence            3578899999999877665      34444455332 22232233332  37889999998877776532 223333   


Q ss_pred             --------ECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEE---EECCCCeeeEE-----Ee----c-cC
Q 004603          625 --------DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY---WSINNGSCAGV-----FK----V-CN  683 (743)
Q Consensus       625 --------Dl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~Irv---WDl~tg~~v~~-----~~----~-~~  683 (743)
                              +++.+..  ..  .....|.++.|+|||..+++..  ++.|.|   -....|+ ...     +.    . ..
T Consensus       428 ~~gql~~~~vd~ge~--~~--~~~g~Issl~wSpDG~RiA~i~--~g~v~Va~Vvr~~~G~-~~l~~~~~l~~~l~~~~~  500 (591)
T PRK13616        428 ATGQLARTPVDASAV--AS--RVPGPISELQLSRDGVRAAMII--GGKVYLAVVEQTEDGQ-YALTNPREVGPGLGDTAV  500 (591)
T ss_pred             CCceEEEEeccCchh--hh--ccCCCcCeEEECCCCCEEEEEE--CCEEEEEEEEeCCCCc-eeecccEEeecccCCccc
Confidence                    3332221  11  2345799999999999877665  466766   3333443 111     11    1 13


Q ss_pred             ceeeecCCCEEEEEecCCeEEEE
Q 004603          684 LMPIILKGCFILNSIFNCYLLLH  706 (743)
Q Consensus       684 ~i~~s~~g~~l~sgs~Dg~I~vh  706 (743)
                      .+.|..++..+ .+..++...+|
T Consensus       501 ~l~W~~~~~L~-V~~~~~~~~v~  522 (591)
T PRK13616        501 SLDWRTGDSLV-VGRSDPEHPVW  522 (591)
T ss_pred             cceEecCCEEE-EEecCCCCceE
Confidence            35677777754 44444433333

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=95.37  E-value=0.0042  Score=72.78  Aligned_cols=117  Identities=20%  Similarity=0.267  Sum_probs=73.7

Q ss_pred             eEEEEEcC---CCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEE-----------EcCCCCEEEEEeCCCeEEE
Q 004603          558 VESCHFSP---DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVR-----------FSPSLSRLATSSADRTVRV  623 (743)
Q Consensus       558 V~siafsp---dg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~va-----------fsp~~~~LaSgs~Dg~Vrv  623 (743)
                      +.-|.|+|   +.-+++.+-.+++|++.+.++... ..|++|..+++.++           .+|||..|+.++.||.|++
T Consensus       183 ~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f  261 (1283)
T KOG1916|consen  183 PQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGF  261 (1283)
T ss_pred             cceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccce
Confidence            34455554   666788888889999877654322 34556776655543           5789999999999999999


Q ss_pred             EECCCC----CeeEEEEecCCCC--eEEEEEecC-------CCc--EEEEEeCCCcEEEEECCCCeee
Q 004603          624 WDTENP----DYSLRTFTGHSTT--VMSLDFHPS-------KED--LLCSCDNNSEIRYWSINNGSCA  676 (743)
Q Consensus       624 WDl~~~----~~~l~~l~~h~~~--V~sl~fsp~-------g~~--lL~Sgs~Dg~IrvWDl~tg~~v  676 (743)
                      |.+--.    ..|++..+.|.+.  |+.+ |+..       +.+  ++.+...+..+++|.....+|.
T Consensus       262 ~Qiyi~g~~~~rclhewkphd~~p~vC~l-c~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl  328 (1283)
T KOG1916|consen  262 YQIYITGKIVHRCLHEWKPHDKHPRVCWL-CHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL  328 (1283)
T ss_pred             eeeeeeccccHhhhhccCCCCCCCceeee-eccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence            976321    2346666777632  3333 3321       111  2334445567889987777775

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=95.22  E-value=3.3  Score=46.50  Aligned_cols=180  Identities=18%  Similarity=0.115  Sum_probs=91.9

Q ss_pred             CEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcC-----CC---CEEEEEeCCCc
Q 004603          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-----DG---KLLATGGHDKK  578 (743)
Q Consensus       507 ~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafsp-----dg---~~LaSgs~Dg~  578 (743)
                      -|++.|..+|.+.+.+.....-....  .+.+         ...-......|+++.|+-     |+   -++++|...|.
T Consensus        98 GFvaigy~~G~l~viD~RGPavI~~~--~i~~---------~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~  166 (395)
T PF08596_consen   98 GFVAIGYESGSLVVIDLRGPAVIYNE--NIRE---------SFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGN  166 (395)
T ss_dssp             SEEEEEETTSEEEEEETTTTEEEEEE--EGGG-----------T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSE
T ss_pred             cEEEEEecCCcEEEEECCCCeEEeec--cccc---------cccccccccCeeEEEEEEEecCCCcccceEEEEEeCCCC
Confidence            58999999999999977333111000  0000         001112345678888863     33   37889999999


Q ss_pred             EEEEECC--C-CeE----EEEEcccCCCEEEEE-EcCC-C-------------------CEEEEEeCCCeEEEEECCCCC
Q 004603          579 AVLWCTE--S-FTV----KSTLEEHTQWITDVR-FSPS-L-------------------SRLATSSADRTVRVWDTENPD  630 (743)
Q Consensus       579 V~IWd~~--t-~~~----i~~l~~H~~~V~~va-fsp~-~-------------------~~LaSgs~Dg~VrvWDl~~~~  630 (743)
                      +.+|.+.  . +..    ......|.+.|..|. |+.+ +                   +.++....+..|||+..-+.+
T Consensus       167 v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k  246 (395)
T PF08596_consen  167 VLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKSK  246 (395)
T ss_dssp             EEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT---
T ss_pred             EEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCCCc
Confidence            9999764  1 211    122224556666554 3221 1                   224444558889999988766


Q ss_pred             eeEEEEecCCCCeEEEEEec----CCCcEEEEEeCCCcEEEEECCCCeeeEEEecc--------CceeeecCCCEEEEEe
Q 004603          631 YSLRTFTGHSTTVMSLDFHP----SKEDLLCSCDNNSEIRYWSINNGSCAGVFKVC--------NLMPIILKGCFILNSI  698 (743)
Q Consensus       631 ~~l~~l~~h~~~V~sl~fsp----~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~--------~~i~~s~~g~~l~sgs  698 (743)
                      ..-+.+ ...-.+..+++-+    .+...|++-..+|.|++|.+..-+.+..+...        ....++.+|..++..+
T Consensus       247 ~~~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gdi~~~~g  325 (395)
T PF08596_consen  247 GAHKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGDIFYWTG  325 (395)
T ss_dssp             EEEEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS-EEEE-S
T ss_pred             ccceee-ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCCCCEEEEeC
Confidence            533444 2222334455532    23457778888999999999998888877763        2355666666554443

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=95.20  E-value=0.17  Score=57.78  Aligned_cols=117  Identities=10%  Similarity=0.106  Sum_probs=77.9

Q ss_pred             CCeEEEEEcCC----CCEEEEEeCCCcEEEEECC-----CCeEEEEEccc---CCCE--EEEEEcCCCCEEEEEeCCCeE
Q 004603          556 SKVESCHFSPD----GKLLATGGHDKKAVLWCTE-----SFTVKSTLEEH---TQWI--TDVRFSPSLSRLATSSADRTV  621 (743)
Q Consensus       556 ~~V~siafspd----g~~LaSgs~Dg~V~IWd~~-----t~~~i~~l~~H---~~~V--~~vafsp~~~~LaSgs~Dg~V  621 (743)
                      ..|..+.|.|-    ...+...-..+.|.||-+.     ..+.+..-..+   .-+|  -.+.|||....|+.-..+..-
T Consensus        57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvS  136 (671)
T PF15390_consen   57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVS  136 (671)
T ss_pred             ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCcee
Confidence            34999999983    3245555668899999875     22222211111   1111  235699988888776666655


Q ss_pred             EEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCC
Q 004603          622 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN  672 (743)
Q Consensus       622 rvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~t  672 (743)
                      -+++++.....++.-....+.|.|.||.+||..++++.+..=.-+|||-..
T Consensus       137 V~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q  187 (671)
T PF15390_consen  137 VLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ  187 (671)
T ss_pred             EeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence            667777655545544456788999999999999988887666778898553

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=95.14  E-value=0.86  Score=53.65  Aligned_cols=124  Identities=11%  Similarity=0.127  Sum_probs=79.4

Q ss_pred             eeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEE--EEcccCCCEEEEEEc--CCCCEEEEEeCCC
Q 004603          544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS--TLEEHTQWITDVRFS--PSLSRLATSSADR  619 (743)
Q Consensus       544 ~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~--~l~~H~~~V~~vafs--p~~~~LaSgs~Dg  619 (743)
                      .+....++...-..+.-+.-+.-++..++-+...++.|||.+.+....  .| ...+.|.++.|.  |++..+++.|...
T Consensus        18 ~w~~t~~~~T~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~   96 (631)
T PF12234_consen   18 EWLLTSTFETGISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPH   96 (631)
T ss_pred             EEEEEEEEecCCCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeee-cCCCceeeceeeecCCCCEEEEEEcCc
Confidence            344445555555556666666655554554445579999998876432  33 346789999995  4788899999999


Q ss_pred             eEEEEECC-----CCC---eeEEE--EecCC-CCeEEEEEecCCCcEEEEEeCCCcEEEEECC
Q 004603          620 TVRVWDTE-----NPD---YSLRT--FTGHS-TTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN  671 (743)
Q Consensus       620 ~VrvWDl~-----~~~---~~l~~--l~~h~-~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~  671 (743)
                      .|.+|--.     +..   .+++.  +..|+ .+|.+.+|.++|. ++ .|+ +..+.|+|-.
T Consensus        97 ~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~-Lv-V~s-GNqlfv~dk~  156 (631)
T PF12234_consen   97 HVLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGT-LV-VGS-GNQLFVFDKW  156 (631)
T ss_pred             EEEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCe-EE-EEe-CCEEEEECCC
Confidence            99998531     111   11222  23444 5789999999985 33 343 4578888743

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.05  E-value=0.21  Score=56.27  Aligned_cols=132  Identities=16%  Similarity=0.191  Sum_probs=86.3

Q ss_pred             CCCE-EEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCC-------EEEEEeCCCeEEEEECCCCCe-eEEEE
Q 004603          566 DGKL-LATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS-------RLATSSADRTVRVWDTENPDY-SLRTF  636 (743)
Q Consensus       566 dg~~-LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~-------~LaSgs~Dg~VrvWDl~~~~~-~l~~l  636 (743)
                      +.++ |.++..-..++-.|++.|+.+..+.-|.. |.-+.+.|+.+       .-+.|-.|..|.-||.|-... .+..-
T Consensus       344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~  422 (644)
T KOG2395|consen  344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV  422 (644)
T ss_pred             ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence            4443 45556667788899999999999988777 88888888643       234566799999999885433 22232


Q ss_pred             ecCC----CCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeee-EEEec----cCceeeecCCCEEEEEecCC
Q 004603          637 TGHS----TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA-GVFKV----CNLMPIILKGCFILNSIFNC  701 (743)
Q Consensus       637 ~~h~----~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v-~~~~~----~~~i~~s~~g~~l~sgs~Dg  701 (743)
                      .+|.    ....|.+  ..+...+|.||.+|.||+||. .+... ..+.+    ...+.++.+|.||++.+..-
T Consensus       423 q~kqy~~k~nFsc~a--TT~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~ty  493 (644)
T KOG2395|consen  423 QSKQYSTKNNFSCFA--TTESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATCKTY  493 (644)
T ss_pred             eccccccccccceee--ecCCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEecccE
Confidence            3332    1223333  334446889999999999997 33322 22332    24467778999888766543

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.97  E-value=0.075  Score=64.02  Aligned_cols=101  Identities=20%  Similarity=0.237  Sum_probs=70.5

Q ss_pred             CCCEEEEEeCCCcEEEEECCCC-eEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeE
Q 004603          566 DGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVM  644 (743)
Q Consensus       566 dg~~LaSgs~Dg~V~IWd~~t~-~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~  644 (743)
                      -+..++.|+..|.|...|+... .+...=+.-.++|++++|+-+|..++.|-.+|.|.+||+.+++. ++.+..|..+++
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~-l~~i~e~~ap~t  176 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKI-LKVITEHGAPVT  176 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcc-eeeeeecCCccc
Confidence            3557888888888988887642 21111122357899999999999999999999999999998664 677766665555


Q ss_pred             EEE---EecCCCcEEEEEeCCCcEEEEEC
Q 004603          645 SLD---FHPSKEDLLCSCDNNSEIRYWSI  670 (743)
Q Consensus       645 sl~---fsp~g~~lL~Sgs~Dg~IrvWDl  670 (743)
                      ++-   +..++. .+.++...|.  +|.+
T Consensus       177 ~vi~v~~t~~nS-~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  177 GVIFVGRTSQNS-KLLTSDTGGS--FWKL  202 (1206)
T ss_pred             eEEEEEEeCCCc-EEEEccCCCc--eEEE
Confidence            543   344444 5557766664  6654

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.94  E-value=0.23  Score=55.85  Aligned_cols=110  Identities=11%  Similarity=0.127  Sum_probs=74.7

Q ss_pred             eEEEEEcCCCC-------EEEEEeCCCcEEEEECCC-Ce-EEEEEcccC----CCEEEEEEcCCCCEEEEEeCCCeEEEE
Q 004603          558 VESCHFSPDGK-------LLATGGHDKKAVLWCTES-FT-VKSTLEEHT----QWITDVRFSPSLSRLATSSADRTVRVW  624 (743)
Q Consensus       558 V~siafspdg~-------~LaSgs~Dg~V~IWd~~t-~~-~i~~l~~H~----~~V~~vafsp~~~~LaSgs~Dg~VrvW  624 (743)
                      |.-+.+.|+.+       .-+.|-.|+.|.-||.+- ++ .+....+|.    ....|.+-.. ..+||.|+.+|.||+|
T Consensus       378 i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~-sG~IvvgS~~GdIRLY  456 (644)
T KOG2395|consen  378 INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTE-SGYIVVGSLKGDIRLY  456 (644)
T ss_pred             cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccccccccceeeecC-CceEEEeecCCcEEee
Confidence            55555555443       134556688899999873 22 333334442    2344544333 4589999999999999


Q ss_pred             ECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECC
Q 004603          625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN  671 (743)
Q Consensus       625 Dl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~  671 (743)
                      |- .+......+.+-..+|..|+..-+|.++|+||  +..+.+.|+.
T Consensus       457 dr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc--~tyLlLi~t~  500 (644)
T KOG2395|consen  457 DR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC--KTYLLLIDTL  500 (644)
T ss_pred             hh-hhhhhhhcccccCCceeeEEeeccCcEEEEec--ccEEEEEEEe
Confidence            96 44444566778889999999999999999777  4677777764

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=94.56  E-value=0.1  Score=53.02  Aligned_cols=105  Identities=13%  Similarity=0.091  Sum_probs=60.7

Q ss_pred             CCCEEEEEeCCCcEEEEECCCC-eEEEEEcccCCCEEEEE-EcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCC-CC
Q 004603          566 DGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVR-FSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS-TT  642 (743)
Q Consensus       566 dg~~LaSgs~Dg~V~IWd~~t~-~~i~~l~~H~~~V~~va-fsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~-~~  642 (743)
                      -+..+++|+.||.|.+|+..-. .....+..-...|.++- --.++.+.++++.|+.||.|++...+. +.....|+ ..
T Consensus        69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~-~g~~g~h~~~~  147 (238)
T KOG2444|consen   69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKV-LGYVGQHNFES  147 (238)
T ss_pred             cCceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCce-eeeeccccCCC
Confidence            3457889999999999987621 11111111122233321 122455788999999999999987554 44444455 33


Q ss_pred             eEEEEEecCCCcEEEEE--eCCCcEEEEECCC
Q 004603          643 VMSLDFHPSKEDLLCSC--DNNSEIRYWSINN  672 (743)
Q Consensus       643 V~sl~fsp~g~~lL~Sg--s~Dg~IrvWDl~t  672 (743)
                      +..+.....++ +++..  |.|..++.|++..
T Consensus       148 ~e~~ivv~sd~-~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  148 GEELIVVGSDE-FLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             cceeEEecCCc-eEEeeccccchhhhhcchhh
Confidence            44443333333 44444  5666777777654

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=94.53  E-value=1.2  Score=48.16  Aligned_cols=124  Identities=13%  Similarity=0.178  Sum_probs=81.3

Q ss_pred             CeEEEEEcCCCCEEEEEeC-----C----CcEEEEECC-CCeEEEEEcccCCCEEEEEEcCCCCEEEEEeC-CCeEEEEE
Q 004603          557 KVESCHFSPDGKLLATGGH-----D----KKAVLWCTE-SFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWD  625 (743)
Q Consensus       557 ~V~siafspdg~~LaSgs~-----D----g~V~IWd~~-t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~-Dg~VrvWD  625 (743)
                      ..+.+.+.|+|++.++...     .    ..-.||-++ .+..++.+..|-..-..|+|+||++.|+.+.. .+.|.-|+
T Consensus       112 r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~  191 (307)
T COG3386         112 RPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYD  191 (307)
T ss_pred             CCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEe
Confidence            4567888889987776544     1    122455555 56666667666666778999999988877765 57888887


Q ss_pred             CCC--C----CeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCC-cEEEEECCCCeeeEEEecc
Q 004603          626 TEN--P----DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS-EIRYWSINNGSCAGVFKVC  682 (743)
Q Consensus       626 l~~--~----~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg-~IrvWDl~tg~~v~~~~~~  682 (743)
                      +..  +    ......+..+.+..-.++...+|. +.+++..+| .|.+|+.. |+.+..+...
T Consensus       192 ~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~-lw~~a~~~g~~v~~~~pd-G~l~~~i~lP  253 (307)
T COG3386         192 LDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGN-LWVAAVWGGGRVVRFNPD-GKLLGEIKLP  253 (307)
T ss_pred             cCcccCccCCcceEEEccCCCCCCCceEEeCCCC-EEEecccCCceEEEECCC-CcEEEEEECC
Confidence            752  1    111222223446667788888876 443443343 89999998 8888888765

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=94.43  E-value=2.9  Score=50.45  Aligned_cols=81  Identities=26%  Similarity=0.344  Sum_probs=56.2

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCC---------CeE--E-EEE--------cccCCCEEEEEEcCC---CCEE
Q 004603          556 SKVESCHFSPDGKLLATGGHDKKAVLWCTES---------FTV--K-STL--------EEHTQWITDVRFSPS---LSRL  612 (743)
Q Consensus       556 ~~V~siafspdg~~LaSgs~Dg~V~IWd~~t---------~~~--i-~~l--------~~H~~~V~~vafsp~---~~~L  612 (743)
                      -.|..|.++|+|++|+..|..+.+.+.=.+.         ++.  . +++        ..+...|..++|||.   +..|
T Consensus        85 f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l  164 (717)
T PF10168_consen   85 FEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL  164 (717)
T ss_pred             eeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence            4588999999999999999876544432111         111  1 111        134567999999995   5788


Q ss_pred             EEEeCCCeEEEEECCCCCeeEEEE
Q 004603          613 ATSSADRTVRVWDTENPDYSLRTF  636 (743)
Q Consensus       613 aSgs~Dg~VrvWDl~~~~~~l~~l  636 (743)
                      +.-..|++||+||+.....+..++
T Consensus       165 ~vLtsdn~lR~y~~~~~~~p~~v~  188 (717)
T PF10168_consen  165 VVLTSDNTLRLYDISDPQHPWQVL  188 (717)
T ss_pred             EEEecCCEEEEEecCCCCCCeEEE
Confidence            888899999999998766554444

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=94.40  E-value=1.1  Score=52.83  Aligned_cols=137  Identities=11%  Similarity=0.091  Sum_probs=74.4

Q ss_pred             EEEEcCCCCEEEEEeCC------CcEEEEECCCCeEEE--EEcccCCCEEEEEEcCCCCEEEEEeCCCe-----EEEEEC
Q 004603          560 SCHFSPDGKLLATGGHD------KKAVLWCTESFTVKS--TLEEHTQWITDVRFSPSLSRLATSSADRT-----VRVWDT  626 (743)
Q Consensus       560 siafspdg~~LaSgs~D------g~V~IWd~~t~~~i~--~l~~H~~~V~~vafsp~~~~LaSgs~Dg~-----VrvWDl  626 (743)
                      ++++. ++.+.++||.|      .+|..||..+.+...  .+.........+.+  +|...|+|+.||.     |-.||.
T Consensus       327 ~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l--~g~iYavGG~dg~~~l~svE~YDp  403 (571)
T KOG4441|consen  327 GVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVL--DGKLYAVGGFDGEKSLNSVECYDP  403 (571)
T ss_pred             cEEEE-CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEE--CCEEEEEeccccccccccEEEecC
Confidence            34443 56788899988      356677877654322  12222222222222  5778899999875     778888


Q ss_pred             CCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCC------cEEEEECCCCeeeEEEeccC----ceeeecCCCEEEE
Q 004603          627 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS------EIRYWSINNGSCAGVFKVCN----LMPIILKGCFILN  696 (743)
Q Consensus       627 ~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg------~IrvWDl~tg~~v~~~~~~~----~i~~s~~g~~l~s  696 (743)
                      ++.....  ...............-+..+++.|+.|+      +|..||..+++....-.-.+    .-....++...+.
T Consensus       404 ~~~~W~~--va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvv  481 (571)
T KOG4441|consen  404 VTNKWTP--VAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVV  481 (571)
T ss_pred             CCCcccc--cCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEE
Confidence            7755321  1112222233332222345777787554      57788888776532221110    1133456666777


Q ss_pred             EecCC
Q 004603          697 SIFNC  701 (743)
Q Consensus       697 gs~Dg  701 (743)
                      |+.|+
T Consensus       482 GG~~~  486 (571)
T KOG4441|consen  482 GGFDG  486 (571)
T ss_pred             CCccC
Confidence            77776

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.37  E-value=8.4  Score=41.01  Aligned_cols=120  Identities=15%  Similarity=0.192  Sum_probs=79.3

Q ss_pred             eeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEccc-CCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004603          551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEH-TQWITDVRFSPSLSRLATSSADRTVRVWDTENP  629 (743)
Q Consensus       551 l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H-~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~  629 (743)
                      +.+-+..|.++.|+|+.+.|++......-.||=...|+.++++.-. -.....|.+.-++.++++--.+..+.++.+...
T Consensus        81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~  160 (316)
T COG3204          81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD  160 (316)
T ss_pred             cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence            3444555999999999998888887777788877778888877421 122345666666666666667888888876654


Q ss_pred             Cee---------EEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECC
Q 004603          630 DYS---------LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN  671 (743)
Q Consensus       630 ~~~---------l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~  671 (743)
                      ...         +..........-.++|.|....++++=- -.=++||.+.
T Consensus       161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKE-r~P~~I~~~~  210 (316)
T COG3204         161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKE-RNPIGIFEVT  210 (316)
T ss_pred             ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEc-cCCcEEEEEe
Confidence            321         1112222456788999999887775543 4456666554

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.31  E-value=0.4  Score=58.13  Aligned_cols=71  Identities=27%  Similarity=0.389  Sum_probs=57.2

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEE---EcCCCCEEEEEeCCCeEEEEEC
Q 004603          554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVR---FSPSLSRLATSSADRTVRVWDT  626 (743)
Q Consensus       554 H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~va---fsp~~~~LaSgs~Dg~VrvWDl  626 (743)
                      -.++|+|++|+.+|++++.|-.+|.|.+||+.+++.++.+..|..+++.+-   +..++..++++...|.  +|.+
T Consensus       129 v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  129 VQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             cCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence            457899999999999999999999999999999999998888776655543   3445567888877775  5654

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=93.98  E-value=0.15  Score=39.06  Aligned_cols=32  Identities=22%  Similarity=0.451  Sum_probs=28.6

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe
Q 004603          556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFT  588 (743)
Q Consensus       556 ~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~  588 (743)
                      ..|.+++|+|...+||.|..||.|.||.+ +++
T Consensus        12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q   43 (47)
T PF12894_consen   12 SRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ   43 (47)
T ss_pred             CcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence            45999999999999999999999999998 443

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=93.91  E-value=0.13  Score=56.80  Aligned_cols=105  Identities=16%  Similarity=0.189  Sum_probs=66.8

Q ss_pred             cCCCCEEEEEe---------CCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEE
Q 004603          564 SPDGKLLATGG---------HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR  634 (743)
Q Consensus       564 spdg~~LaSgs---------~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~  634 (743)
                      |||+++++...         ..+.+.|||+.+++....... ...+....|+|+|+.++... ++.|.++++.++.....
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~l   78 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQL   78 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEES
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEe
Confidence            56777666632         246788999998765544333 56788999999999988875 78899999877643222


Q ss_pred             EEecC----------------CCCeEEEEEecCCCcEEEEEeCCCcEEEEEC
Q 004603          635 TFTGH----------------STTVMSLDFHPSKEDLLCSCDNNSEIRYWSI  670 (743)
Q Consensus       635 ~l~~h----------------~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl  670 (743)
                      +..|-                -+.-.++-|+|++.++++.--.+..|+.+.+
T Consensus        79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~  130 (353)
T PF00930_consen   79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPL  130 (353)
T ss_dssp             ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEE
T ss_pred             ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEe
Confidence            33220                1223568899999988777666666666544

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PRK13616 lipoprotein LpqB; Provisional

Probab=93.89  E-value=3  Score=49.32  Aligned_cols=107  Identities=21%  Similarity=0.227  Sum_probs=62.0

Q ss_pred             eEEEEEcCCCCEEEEEeCC-CcEEEE-----------ECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEE--
Q 004603          558 VESCHFSPDGKLLATGGHD-KKAVLW-----------CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV--  623 (743)
Q Consensus       558 V~siafspdg~~LaSgs~D-g~V~IW-----------d~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~Vrv--  623 (743)
                      .++-.|+|||+.|++.... ..+++.           +++.++...   .....|..++|+|||.+|+... ++.|.+  
T Consensus       399 ~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~  474 (591)
T PRK13616        399 LTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAV  474 (591)
T ss_pred             CCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEE
Confidence            7788999998877776533 122232           333332221   2345799999999999887665 577776  


Q ss_pred             -EECCCCCeeE---EEEe-cCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEC
Q 004603          624 -WDTENPDYSL---RTFT-GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI  670 (743)
Q Consensus       624 -WDl~~~~~~l---~~l~-~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl  670 (743)
                       -....+...+   ..+. +-...+.++.|..++. |+ .+..++...+|.+
T Consensus       475 Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~-L~-V~~~~~~~~v~~v  524 (591)
T PRK13616        475 VEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDS-LV-VGRSDPEHPVWYV  524 (591)
T ss_pred             EEeCCCCceeecccEEeecccCCccccceEecCCE-EE-EEecCCCCceEEE
Confidence             3333332212   1122 2334468899999877 44 3333444445543

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=93.88  E-value=0.2  Score=51.01  Aligned_cols=105  Identities=18%  Similarity=0.171  Sum_probs=67.2

Q ss_pred             CCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEE-EEcCCCCEEEEEeCCCcEEEEEC
Q 004603          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESC-HFSPDGKLLATGGHDKKAVLWCT  584 (743)
Q Consensus       506 ~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~si-afspdg~~LaSgs~Dg~V~IWd~  584 (743)
                      ..-+.+|+.|+.|.+|..+-.....+.               +.   .-...|.|. .--.++.+.++++.|+.|+.|++
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~---------------~~---s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~  131 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGAHSDR---------------VC---SGEESIDLGIPNGRDSSLGCVGAQDGRIRACNI  131 (238)
T ss_pred             CceEEeecccceEEEecCCccchHHHh---------------hh---cccccceeccccccccceeEEeccCCceeeecc
Confidence            466889999999999966522111110               00   001112222 22235668999999999999999


Q ss_pred             CCCeEEEEEcccC-CCEEEEEEcCCCCEEEEE--eCCCeEEEEECCC
Q 004603          585 ESFTVKSTLEEHT-QWITDVRFSPSLSRLATS--SADRTVRVWDTEN  628 (743)
Q Consensus       585 ~t~~~i~~l~~H~-~~V~~vafsp~~~~LaSg--s~Dg~VrvWDl~~  628 (743)
                      .-.+.+...-.|. ..+........+..++.+  |.|..++.|++..
T Consensus       132 ~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  132 KPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             ccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence            8888877777777 555555555556666666  6777777777754

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=93.63  E-value=7.5  Score=40.76  Aligned_cols=135  Identities=17%  Similarity=0.134  Sum_probs=77.7

Q ss_pred             CCCEEEEEeCCCcEEEEECC-CCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEE---------
Q 004603          566 DGKLLATGGHDKKAVLWCTE-SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT---------  635 (743)
Q Consensus       566 dg~~LaSgs~Dg~V~IWd~~-t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~---------  635 (743)
                      .++.|+.|+++| |.++++. ..+.....  +...|..+...|+-+.|++-+ |+.|+++++.........         
T Consensus         6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~   81 (275)
T PF00780_consen    6 WGDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSR   81 (275)
T ss_pred             CCCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccc
Confidence            677899999888 8999983 33333333  233499999999867666554 699999998754321100         


Q ss_pred             ----EecCCCCeEEEE--EecCCCcEEEEEeCCCcEEEEECCCC-----eeeEEEeccCc-eeeecCCCEEEEEecCCeE
Q 004603          636 ----FTGHSTTVMSLD--FHPSKEDLLCSCDNNSEIRYWSINNG-----SCAGVFKVCNL-MPIILKGCFILNSIFNCYL  703 (743)
Q Consensus       636 ----l~~h~~~V~sl~--fsp~g~~lL~Sgs~Dg~IrvWDl~tg-----~~v~~~~~~~~-i~~s~~g~~l~sgs~Dg~I  703 (743)
                          .......|...+  -...+...|+.+. ..+|.||.....     +..+.+..... ..+...+..++.|..++..
T Consensus        82 ~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~-kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~~~~i~v~~~~~f~  160 (275)
T PF00780_consen   82 SLPTKLPETKGVSFFAVNGGHEGSRRLCVAV-KKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFLGNKICVGTSKGFY  160 (275)
T ss_pred             cccccccccCCeeEEeeccccccceEEEEEE-CCEEEEEEEECCcccccceeEEEEcCCCcEEEEEeCCEEEEEeCCceE
Confidence                111223344444  1123344554444 558888877643     34455554322 2233336777777666655


Q ss_pred             EE
Q 004603          704 LL  705 (743)
Q Consensus       704 ~v  705 (743)
                      .+
T Consensus       161 ~i  162 (275)
T PF00780_consen  161 LI  162 (275)
T ss_pred             EE
Confidence            44

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=93.54  E-value=3.3  Score=45.96  Aligned_cols=140  Identities=12%  Similarity=0.109  Sum_probs=77.6

Q ss_pred             CeEEEEEcCCCCEEEEEe-----------CCC-cEEEEECCC--Ce--EEEEEcccCCCEEEEEEcCCCCEEEEEeCCCe
Q 004603          557 KVESCHFSPDGKLLATGG-----------HDK-KAVLWCTES--FT--VKSTLEEHTQWITDVRFSPSLSRLATSSADRT  620 (743)
Q Consensus       557 ~V~siafspdg~~LaSgs-----------~Dg-~V~IWd~~t--~~--~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~  620 (743)
                      ....|+|.++|+++++-.           ..+ .|.+++-.+  ++  ....|...-.....++|.+++ +++ ++.+..
T Consensus        15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~i   92 (367)
T TIGR02604        15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPDI   92 (367)
T ss_pred             CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCeE
Confidence            467899999999877753           223 676665332  22  234444444556889999888 444 444544


Q ss_pred             EEEEECCCC-----C--eeEEEEec----CCCCeEEEEEecCCCcEEEEEeC------------------CCcEEEEECC
Q 004603          621 VRVWDTENP-----D--YSLRTFTG----HSTTVMSLDFHPSKEDLLCSCDN------------------NSEIRYWSIN  671 (743)
Q Consensus       621 VrvWDl~~~-----~--~~l~~l~~----h~~~V~sl~fsp~g~~lL~Sgs~------------------Dg~IrvWDl~  671 (743)
                      +++.|....     .  ..+..+..    +...+..++|.|+|..+++.++.                  .+.|.-+|..
T Consensus        93 ~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pd  172 (367)
T TIGR02604        93 LFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPD  172 (367)
T ss_pred             EEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecC
Confidence            445455321     1  11222322    12447789999998644433321                  1345555665


Q ss_pred             CCeeeEEEecc---CceeeecCCCEEEEEe
Q 004603          672 NGSCAGVFKVC---NLMPIILKGCFILNSI  698 (743)
Q Consensus       672 tg~~v~~~~~~---~~i~~s~~g~~l~sgs  698 (743)
                      .++......+.   ..++++++|.++++-.
T Consensus       173 g~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn  202 (367)
T TIGR02604       173 GGKLRVVAHGFQNPYGHSVDSWGDVFFCDN  202 (367)
T ss_pred             CCeEEEEecCcCCCccceECCCCCEEEEcc
Confidence            54432222222   3478888888876644

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=93.51  E-value=11  Score=39.44  Aligned_cols=116  Identities=16%  Similarity=0.184  Sum_probs=70.9

Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEE--------------EcccCCCEEEEE--EcCCCCEEEEEeCCCeE
Q 004603          558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKST--------------LEEHTQWITDVR--FSPSLSRLATSSADRTV  621 (743)
Q Consensus       558 V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~--------------l~~H~~~V~~va--fsp~~~~LaSgs~Dg~V  621 (743)
                      |..|...++-+.|++-+ |+.+.++++........              .......|...+  -...+...+.....++|
T Consensus        38 I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i  116 (275)
T PF00780_consen   38 ITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKI  116 (275)
T ss_pred             EEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEE
Confidence            99999998777666655 59999999876443321              111233455444  11233333344446689


Q ss_pred             EEEECCCCC----eeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEE
Q 004603          622 RVWDTENPD----YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF  679 (743)
Q Consensus       622 rvWDl~~~~----~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~  679 (743)
                      .+|......    ..++.+. ....+.+++|..+   .++.|.. ....+.|+.++.....+
T Consensus       117 ~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~~~---~i~v~~~-~~f~~idl~~~~~~~l~  173 (275)
T PF00780_consen  117 LIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFLGN---KICVGTS-KGFYLIDLNTGSPSELL  173 (275)
T ss_pred             EEEEEECCcccccceeEEEE-cCCCcEEEEEeCC---EEEEEeC-CceEEEecCCCCceEEe
Confidence            988876531    2344544 4477899999943   4545553 45889999977654443

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=93.24  E-value=9.6  Score=40.01  Aligned_cols=143  Identities=13%  Similarity=0.060  Sum_probs=82.7

Q ss_pred             CeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCeEEEE-EcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEE-CCCCCeeE
Q 004603          557 KVESCHFSPDGKLLATGG-HDKKAVLWCTESFTVKST-LEEHTQWITDVRFSPSLSRLATSSADRTVRVWD-TENPDYSL  633 (743)
Q Consensus       557 ~V~siafspdg~~LaSgs-~Dg~V~IWd~~t~~~i~~-l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWD-l~~~~~~l  633 (743)
                      .+.+.++++++..+|... .++.-.||-...+..... +.+  ..++.-.|++++...+....+...+++. ...+....
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~  102 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEP  102 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccC--CccccccccCCCCEEEEEcCCCceEEEEecCCCccee
Confidence            588999999999776655 233333333333332222 233  3678889999977777766677777774 33333212


Q ss_pred             EEEecC--CCCeEEEEEecCCCcEEEEEe--CCCcEEEEECC---CC--e----eeEEE----eccCceeeecCCCEEEE
Q 004603          634 RTFTGH--STTVMSLDFHPSKEDLLCSCD--NNSEIRYWSIN---NG--S----CAGVF----KVCNLMPIILKGCFILN  696 (743)
Q Consensus       634 ~~l~~h--~~~V~sl~fsp~g~~lL~Sgs--~Dg~IrvWDl~---tg--~----~v~~~----~~~~~i~~s~~g~~l~s  696 (743)
                      ......  ...|.++.++|||..+.+...  .++.|.|=-+.   .+  .    .+...    .....+.|..++.+++.
T Consensus       103 ~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~  182 (253)
T PF10647_consen  103 VEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVL  182 (253)
T ss_pred             EEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEE
Confidence            222211  128999999999998776653  34566665443   22  0    11111    11234677788877776


Q ss_pred             EecCC
Q 004603          697 SIFNC  701 (743)
Q Consensus       697 gs~Dg  701 (743)
                      +...+
T Consensus       183 ~~~~~  187 (253)
T PF10647_consen  183 GRSAG  187 (253)
T ss_pred             eCCCC
Confidence            65544

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.78  E-value=0.76  Score=56.06  Aligned_cols=112  Identities=14%  Similarity=0.111  Sum_probs=71.8

Q ss_pred             eEEEEEcCCCCEEEEE--eCCCcEEEEECCCCeEEE-----------EEcccCCCEEEEEEcCC-CCEEEEEeCCCeEEE
Q 004603          558 VESCHFSPDGKLLATG--GHDKKAVLWCTESFTVKS-----------TLEEHTQWITDVRFSPS-LSRLATSSADRTVRV  623 (743)
Q Consensus       558 V~siafspdg~~LaSg--s~Dg~V~IWd~~t~~~i~-----------~l~~H~~~V~~vafsp~-~~~LaSgs~Dg~Vrv  623 (743)
                      |..+...+|++..++.  +.+-.|..||+++....+           +.......+.|+.|+|. ...++.+..|+.|+|
T Consensus       103 i~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V  182 (1405)
T KOG3630|consen  103 IVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRV  182 (1405)
T ss_pred             ceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhh
Confidence            4445555676654433  344478889987532211           12223455778999995 344677788999999


Q ss_pred             EECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECC
Q 004603          624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN  671 (743)
Q Consensus       624 WDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~  671 (743)
                      ..+......+..+. ....+++++|+|.|..++ .|-..|++.-|-..
T Consensus       183 ~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~-iG~nnGt~vQy~P~  228 (1405)
T KOG3630|consen  183 KSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLF-IGRNNGTEVQYEPS  228 (1405)
T ss_pred             hhhhhhhhhhcccC-cccceeeEEeccccceee-EecCCCeEEEeecc
Confidence            88765333233322 446789999999998544 78888888888643

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.47  E-value=2.2  Score=44.98  Aligned_cols=55  Identities=22%  Similarity=0.284  Sum_probs=43.4

Q ss_pred             EEcCCCCEEEEEeCC-----CcEEEEECCC-CeEEEEEcccCCCEEEEEEcCCCCEEEEEe
Q 004603          562 HFSPDGKLLATGGHD-----KKAVLWCTES-FTVKSTLEEHTQWITDVRFSPSLSRLATSS  616 (743)
Q Consensus       562 afspdg~~LaSgs~D-----g~V~IWd~~t-~~~i~~l~~H~~~V~~vafsp~~~~LaSgs  616 (743)
                      .|||||++|+..-.|     |.|-|||.+. ...+..|..|.-.-..+.|.+||+.++.+.
T Consensus       120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan  180 (366)
T COG3490         120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN  180 (366)
T ss_pred             ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeC
Confidence            589999999877544     7889999875 345666777777778899999999988774

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=92.47  E-value=12  Score=43.65  Aligned_cols=109  Identities=5%  Similarity=-0.051  Sum_probs=66.1

Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEEEEcccC-CCEE---E-------EEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEE
Q 004603          567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHT-QWIT---D-------VRFSPSLSRLATSSADRTVRVWDTENPDYSLRT  635 (743)
Q Consensus       567 g~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~-~~V~---~-------vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~  635 (743)
                      +..|+.++.++.|.-.|..+++.+-.+.... ..+.   +       +++  .+..++.++.|+.|...|.++++. +..
T Consensus        69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~-~W~  145 (527)
T TIGR03075        69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKV-VWS  145 (527)
T ss_pred             CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCE-Eee
Confidence            4567777778899999999998876654211 1111   1       122  235677888899999999999886 333


Q ss_pred             Ee--cCCC--CeEE-EEEecCCCcEEEEEe-----CCCcEEEEECCCCeeeEEEe
Q 004603          636 FT--GHST--TVMS-LDFHPSKEDLLCSCD-----NNSEIRYWSINNGSCAGVFK  680 (743)
Q Consensus       636 l~--~h~~--~V~s-l~fsp~g~~lL~Sgs-----~Dg~IrvWDl~tg~~v~~~~  680 (743)
                      +.  .+..  .+.+ -... ++ .+++..+     .+|.|+.+|.++|+.+..+.
T Consensus       146 ~~~~~~~~~~~~tssP~v~-~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~  198 (527)
T TIGR03075       146 KKNGDYKAGYTITAAPLVV-KG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRY  198 (527)
T ss_pred             cccccccccccccCCcEEE-CC-EEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence            22  1111  1111 1111 22 3443322     26889999999999876654

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PRK10115 protease 2; Provisional

Probab=92.45  E-value=22  Score=43.03  Aligned_cols=111  Identities=11%  Similarity=0.058  Sum_probs=66.3

Q ss_pred             eEEEEEcCCCCEEEEEeC-----CCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeC-C-----CeEEEEEC
Q 004603          558 VESCHFSPDGKLLATGGH-----DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-D-----RTVRVWDT  626 (743)
Q Consensus       558 V~siafspdg~~LaSgs~-----Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~-D-----g~VrvWDl  626 (743)
                      +..+.|+||+++|+.+.+     ...|++.|+.+++.+........  ..++|.+|++.|+.+.. +     ..|+++++
T Consensus       129 l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~l  206 (686)
T PRK10115        129 LGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTI  206 (686)
T ss_pred             EeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEEC
Confidence            667889999998887643     23588889888764322212222  46899998876654433 2     36788888


Q ss_pred             CCCC-eeEEEEecCCCCeEEEEEec-CCCcEEEEEe--CCCcEEEEEC
Q 004603          627 ENPD-YSLRTFTGHSTTVMSLDFHP-SKEDLLCSCD--NNSEIRYWSI  670 (743)
Q Consensus       627 ~~~~-~~l~~l~~h~~~V~sl~fsp-~g~~lL~Sgs--~Dg~IrvWDl  670 (743)
                      .++. .....+........-..+.+ ++.++++.+.  .++.+.+|+.
T Consensus       207 gt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~  254 (686)
T PRK10115        207 GTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA  254 (686)
T ss_pred             CCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence            8762 11333443333333233334 6676665443  3357888884

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=92.45  E-value=0.041  Score=64.84  Aligned_cols=128  Identities=13%  Similarity=0.145  Sum_probs=76.0

Q ss_pred             EeeCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCC--CeEEEEEc-----ccCCCEEEEEEcC---CCCEEEEEeCC
Q 004603          550 LIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTES--FTVKSTLE-----EHTQWITDVRFSP---SLSRLATSSAD  618 (743)
Q Consensus       550 ~l~~H~~~V~siafsp-dg~~LaSgs~Dg~V~IWd~~t--~~~i~~l~-----~H~~~V~~vafsp---~~~~LaSgs~D  618 (743)
                      .+++..+.|-.++|-. +...+.  -.-|...|||++-  |+....+.     .....+.-|.|+|   +.-++..+..+
T Consensus       127 l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~  204 (1283)
T KOG1916|consen  127 LAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKG  204 (1283)
T ss_pred             HHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCC
Confidence            3456777888888854 222222  3336788998863  44322222     2233445566766   45667777789


Q ss_pred             CeEEEEECCCCCeeEEEEecCCCCeEEEE-----------EecCCCcEEEEEeCCCcEEEEECC-----CCeeeEEEecc
Q 004603          619 RTVRVWDTENPDYSLRTFTGHSTTVMSLD-----------FHPSKEDLLCSCDNNSEIRYWSIN-----NGSCAGVFKVC  682 (743)
Q Consensus       619 g~VrvWDl~~~~~~l~~l~~h~~~V~sl~-----------fsp~g~~lL~Sgs~Dg~IrvWDl~-----tg~~v~~~~~~  682 (743)
                      ++|++..+.+..  ...+.+|..++..++           .+|||. +|+..+.||.|++|-+-     .-+|.+.++.|
T Consensus       205 ~~i~lL~~~ra~--~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGt-v~a~a~~dG~v~f~Qiyi~g~~~~rclhewkph  281 (1283)
T KOG1916|consen  205 GEIRLLNINRAL--RSLFRSHSQRVTDMAFFAEGVLKLASLSPDGT-VFAWAISDGSVGFYQIYITGKIVHRCLHEWKPH  281 (1283)
T ss_pred             CceeEeeechHH--HHHHHhcCCCcccHHHHhhchhhheeeCCCCc-EEEEeecCCccceeeeeeeccccHhhhhccCCC
Confidence            999988876533  244556777666654           466765 55666667777777542     22345555544

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=92.39  E-value=5  Score=45.05  Aligned_cols=117  Identities=9%  Similarity=0.160  Sum_probs=63.4

Q ss_pred             CeEEEEEcCCCCEEEEEeC--------------------CCcEEEEECCCCeEEEEEcccC--CCEEEEEEcC--CCCE-
Q 004603          557 KVESCHFSPDGKLLATGGH--------------------DKKAVLWCTESFTVKSTLEEHT--QWITDVRFSP--SLSR-  611 (743)
Q Consensus       557 ~V~siafspdg~~LaSgs~--------------------Dg~V~IWd~~t~~~i~~l~~H~--~~V~~vafsp--~~~~-  611 (743)
                      .-+++.|.|.-+.++|...                    ..++.+||+.+.+.+.++.--.  ..+..|+|..  +..+ 
T Consensus       182 ~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~g  261 (461)
T PF05694_consen  182 FGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYG  261 (461)
T ss_dssp             ----EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EE
T ss_pred             CCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccce
Confidence            3467788887777877643                    3689999999999998886432  2466788854  3333 


Q ss_pred             EEEEeCCCeEEEE-ECCCCCee---EEEEec-----------------CCCCeEEEEEecCCCcEEEEEeCCCcEEEEEC
Q 004603          612 LATSSADRTVRVW-DTENPDYS---LRTFTG-----------------HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI  670 (743)
Q Consensus       612 LaSgs~Dg~VrvW-Dl~~~~~~---l~~l~~-----------------h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl  670 (743)
                      |+.+.....|..| ..+.+...   +..+..                 -..-|++|..+.|.++|++++-.+|.||.||+
T Consensus       262 Fvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDI  341 (461)
T PF05694_consen  262 FVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDI  341 (461)
T ss_dssp             EEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-
T ss_pred             EEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEec
Confidence            3333344444444 33333211   111111                 02457999999999999999999999999999


Q ss_pred             CCC
Q 004603          671 NNG  673 (743)
Q Consensus       671 ~tg  673 (743)
                      ...
T Consensus       342 SDP  344 (461)
T PF05694_consen  342 SDP  344 (461)
T ss_dssp             SST
T ss_pred             CCC
Confidence            763

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=92.18  E-value=7.6  Score=42.41  Aligned_cols=124  Identities=10%  Similarity=0.087  Sum_probs=76.6

Q ss_pred             CcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeC----------CCeEEEEECCCCCeeEEEEe--c-CC---
Q 004603          577 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA----------DRTVRVWDTENPDYSLRTFT--G-HS---  640 (743)
Q Consensus       577 g~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~----------Dg~VrvWDl~~~~~~l~~l~--~-h~---  640 (743)
                      +.|.|+|.++++.+-.+..  +..-.+..+|+++.+++++.          .-.|.+||..+... ...+.  . |.   
T Consensus        17 ~rv~viD~d~~k~lGmi~~--g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~-~~EI~iP~k~R~~~   93 (342)
T PF06433_consen   17 SRVYVIDADSGKLLGMIDT--GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSP-TGEIEIPPKPRAQV   93 (342)
T ss_dssp             EEEEEEETTTTEEEEEEEE--ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEE-EEEEEETTS-B--B
T ss_pred             ceEEEEECCCCcEEEEeec--ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcc-cceEecCCcchhee
Confidence            3799999999988776643  33445678999998877543          45699999998543 33221  1 11   


Q ss_pred             -CCeEEEEEecCCCcEEEE-EeCCCcEEEEECCCCeeeEEEeccCceeeecCC-CEEEEEecCCeE
Q 004603          641 -TTVMSLDFHPSKEDLLCS-CDNNSEIRYWSINNGSCAGVFKVCNLMPIILKG-CFILNSIFNCYL  703 (743)
Q Consensus       641 -~~V~sl~fsp~g~~lL~S-gs~Dg~IrvWDl~tg~~v~~~~~~~~i~~s~~g-~~l~sgs~Dg~I  703 (743)
                       .....+.++.+++++++. .+---.|.|-|+..++.+.++....|.-+-|.+ .-+.+-+.||.+
T Consensus        94 ~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl  159 (342)
T PF06433_consen   94 VPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSL  159 (342)
T ss_dssp             S--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCE
T ss_pred             cccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCce
Confidence             122446788888877654 334457999999999988888765553333322 233344444443

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PHA02713 hypothetical protein; Provisional

Probab=92.12  E-value=4  Score=48.02  Aligned_cols=63  Identities=11%  Similarity=0.132  Sum_probs=35.6

Q ss_pred             CCCEEEEEeCC------CcEEEEECCCCeEEE--EEcccCCCEEEEEEcCCCCEEEEEeCCC-----eEEEEECCCCC
Q 004603          566 DGKLLATGGHD------KKAVLWCTESFTVKS--TLEEHTQWITDVRFSPSLSRLATSSADR-----TVRVWDTENPD  630 (743)
Q Consensus       566 dg~~LaSgs~D------g~V~IWd~~t~~~i~--~l~~H~~~V~~vafsp~~~~LaSgs~Dg-----~VrvWDl~~~~  630 (743)
                      ++.+++.||.+      ..|..||..+.....  .+.........+.+  ++...+.||.++     +|.+||..+..
T Consensus       303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~--~g~IYviGG~~~~~~~~sve~Ydp~~~~  378 (557)
T PHA02713        303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI--DDTIYAIGGQNGTNVERTIECYTMGDDK  378 (557)
T ss_pred             CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE--CCEEEEECCcCCCCCCceEEEEECCCCe
Confidence            67777777754      346778877654321  11111112222222  466777887754     48889988754

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=91.99  E-value=2.6  Score=46.51  Aligned_cols=145  Identities=18%  Similarity=0.229  Sum_probs=83.3

Q ss_pred             CCCCeEEEEEcCCCCEEEE--EeCCC---cEEEEECCCCeEEEEEcc-cCCCE---EEEEEc-CCCC-EEEEEeCCCeEE
Q 004603          554 STSKVESCHFSPDGKLLAT--GGHDK---KAVLWCTESFTVKSTLEE-HTQWI---TDVRFS-PSLS-RLATSSADRTVR  622 (743)
Q Consensus       554 H~~~V~siafspdg~~LaS--gs~Dg---~V~IWd~~t~~~i~~l~~-H~~~V---~~vafs-p~~~-~LaSgs~Dg~Vr  622 (743)
                      -...+..+.|.++++.|+.  ...+.   .+.++|+.++.+...++. ....|   ..+.|. +++. +|.....||.-+
T Consensus       182 ~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~h  261 (353)
T PF00930_consen  182 QDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRH  261 (353)
T ss_dssp             SSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEE
T ss_pred             CccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcE
Confidence            3455888999999883333  33332   356677776655433332 22222   244554 5544 555555788776


Q ss_pred             EEECCCCCeeEEEEecCCCCeEE-EEEecCCCcEEEEEeCCC----cEEEEECCCCeeeEEEec---cC-ceeeecCCCE
Q 004603          623 VWDTENPDYSLRTFTGHSTTVMS-LDFHPSKEDLLCSCDNNS----EIRYWSINNGSCAGVFKV---CN-LMPIILKGCF  693 (743)
Q Consensus       623 vWDl~~~~~~l~~l~~h~~~V~s-l~fsp~g~~lL~Sgs~Dg----~IrvWDl~tg~~v~~~~~---~~-~i~~s~~g~~  693 (743)
                      ||-++........+....-.|.. +.|++++..+++++..+.    .|..-++..+..+..+..   .. .+.|+|+|.+
T Consensus       262 ly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y  341 (353)
T PF00930_consen  262 LYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGKY  341 (353)
T ss_dssp             EEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTSSE
T ss_pred             EEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCCCE
Confidence            66554434334556555556744 678888888888887643    566667772233344443   33 5778899988


Q ss_pred             EEEEe
Q 004603          694 ILNSI  698 (743)
Q Consensus       694 l~sgs  698 (743)
                      ++...
T Consensus       342 ~v~~~  346 (353)
T PF00930_consen  342 YVDTY  346 (353)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            77654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=91.95  E-value=15  Score=40.88  Aligned_cols=147  Identities=15%  Similarity=0.248  Sum_probs=79.3

Q ss_pred             CCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCC-CCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004603          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST-SKVESCHFSPDGKLLATGGHDKKAVLWCT  584 (743)
Q Consensus       506 ~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~-~~V~siafspdg~~LaSgs~Dg~V~IWd~  584 (743)
                      +++|..+..|+.-.+|...-.              ++    .+.-|..+. .......++++.+.++-...++.|+-.|+
T Consensus        48 ~kllF~s~~dg~~nly~lDL~--------------t~----~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL  109 (386)
T PF14583_consen   48 RKLLFASDFDGNRNLYLLDLA--------------TG----EITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDL  109 (386)
T ss_dssp             -EEEEEE-TTSS-EEEEEETT--------------T-----EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEET
T ss_pred             CEEEEEeccCCCcceEEEEcc--------------cC----EEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEEC
Confidence            367777777887777733211              11    122222221 11224566788888766666778999999


Q ss_pred             CCCeEEEEEcccCCCEEEEEEc--CCCCEEEEEeC---C-------------------CeEEEEECCCCCeeEEEEecCC
Q 004603          585 ESFTVKSTLEEHTQWITDVRFS--PSLSRLATSSA---D-------------------RTVRVWDTENPDYSLRTFTGHS  640 (743)
Q Consensus       585 ~t~~~i~~l~~H~~~V~~vafs--p~~~~LaSgs~---D-------------------g~VrvWDl~~~~~~l~~l~~h~  640 (743)
                      ++.+....+......+-...|.  .++..++-.-.   |                   ..|...|+.++.  ..++..-.
T Consensus       110 ~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~--~~~v~~~~  187 (386)
T PF14583_consen  110 DTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGE--RKVVFEDT  187 (386)
T ss_dssp             TT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT----EEEEEEES
T ss_pred             CcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCc--eeEEEecC
Confidence            9988777777777777656663  35555433211   1                   235555677655  34444456


Q ss_pred             CCeEEEEEecCCCcEEEEEeC---CC-cEEEEECCC
Q 004603          641 TTVMSLDFHPSKEDLLCSCDN---NS-EIRYWSINN  672 (743)
Q Consensus       641 ~~V~sl~fsp~g~~lL~Sgs~---Dg-~IrvWDl~t  672 (743)
                      ..+.-+.|+|..+.+|+-|-+   |. .-|||-+++
T Consensus       188 ~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~  223 (386)
T PF14583_consen  188 DWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINT  223 (386)
T ss_dssp             S-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEET
T ss_pred             ccccCcccCCCCCCEEEEeccCCcceeceEEEEEEc
Confidence            778899999998888877753   22 237776653

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=91.88  E-value=0.46  Score=36.42  Aligned_cols=31  Identities=16%  Similarity=0.354  Sum_probs=28.3

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 004603          597 TQWITDVRFSPSLSRLATSSADRTVRVWDTE  627 (743)
Q Consensus       597 ~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~  627 (743)
                      ...|.+++|+|..++||.+..||.|.+|.+.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence            4569999999999999999999999999983

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=91.72  E-value=33  Score=41.99  Aligned_cols=111  Identities=14%  Similarity=0.168  Sum_probs=68.2

Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEEEEcccCCC--------EEEEEEc----------------CCCCEEEEEeCCCeEE
Q 004603          567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW--------ITDVRFS----------------PSLSRLATSSADRTVR  622 (743)
Q Consensus       567 g~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~--------V~~vafs----------------p~~~~LaSgs~Dg~Vr  622 (743)
                      +..|+.++.++.|.-.|..+++.+-.+......        +..+++.                .++.+|+.++.|+.|.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li  273 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI  273 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence            456777777888888999988887666432210        1123331                1345788888999999


Q ss_pred             EEECCCCCeeEEEEecCCCCe-------------EEEEEec--CCCcEEEEEe----------CCCcEEEEECCCCeeeE
Q 004603          623 VWDTENPDYSLRTFTGHSTTV-------------MSLDFHP--SKEDLLCSCD----------NNSEIRYWSINNGSCAG  677 (743)
Q Consensus       623 vWDl~~~~~~l~~l~~h~~~V-------------~sl~fsp--~g~~lL~Sgs----------~Dg~IrvWDl~tg~~v~  677 (743)
                      -.|.++++.| ..|. ..+.|             ..+.-.|  .+. +++.|+          .+|.|+-+|+++|+.+.
T Consensus       274 ALDA~TGk~~-W~fg-~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g-~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W  350 (764)
T TIGR03074       274 ALDADTGKLC-EDFG-NNGTVDLTAGMGTTPPGYYYPTSPPLVAGT-TVVIGGRVADNYSTDEPSGVIRAFDVNTGALVW  350 (764)
T ss_pred             EEECCCCCEE-EEec-CCCceeeecccCcCCCcccccccCCEEECC-EEEEEecccccccccCCCcEEEEEECCCCcEee
Confidence            9999998874 3332 11111             0011111  022 333443          26889999999999987


Q ss_pred             EEe
Q 004603          678 VFK  680 (743)
Q Consensus       678 ~~~  680 (743)
                      .+.
T Consensus       351 ~~~  353 (764)
T TIGR03074       351 AWD  353 (764)
T ss_pred             EEe
Confidence            765

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=91.62  E-value=2.2  Score=48.12  Aligned_cols=92  Identities=16%  Similarity=0.135  Sum_probs=65.5

Q ss_pred             EEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEe--cC----------------
Q 004603          590 KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFH--PS----------------  651 (743)
Q Consensus       590 i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fs--p~----------------  651 (743)
                      ...|......+.+|+.+|++.+.++.+.-|.|.++|+.++.. ++.++|..+.=+.-...  ..                
T Consensus       300 r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~v-vrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~  378 (415)
T PF14655_consen  300 RFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIV-VRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRF  378 (415)
T ss_pred             EEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChh-hhhhccCccceEEEEEeecccccccccccccCCCCcc
Confidence            344555666789999999999999988899999999998654 77777766532221111  11                


Q ss_pred             CCcEEEEEeCCCcEEEEECCCCeeeEEEecc
Q 004603          652 KEDLLCSCDNNSEIRYWSINNGSCAGVFKVC  682 (743)
Q Consensus       652 g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~  682 (743)
                      .-.|++-...-|.|.||+++.|..+..+...
T Consensus       379 ~l~LvIyaprRg~lEvW~~~~g~Rv~a~~v~  409 (415)
T PF14655_consen  379 ALFLVIYAPRRGILEVWSMRQGPRVAAFNVG  409 (415)
T ss_pred             eEEEEEEeccCCeEEEEecCCCCEEEEEEeC
Confidence            1135556778899999999999888777643

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=91.32  E-value=30  Score=39.13  Aligned_cols=42  Identities=7%  Similarity=0.137  Sum_probs=31.8

Q ss_pred             CCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEecc
Q 004603          640 STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVC  682 (743)
Q Consensus       640 ~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~  682 (743)
                      .+.+..++++|+++ ++|.-..+|.+.|.+..-.++...+...
T Consensus       216 ~~~i~~iavSpng~-~iAl~t~~g~l~v~ssDf~~~~~e~~~~  257 (410)
T PF04841_consen  216 DGPIIKIAVSPNGK-FIALFTDSGNLWVVSSDFSEKLCEFDTD  257 (410)
T ss_pred             CCCeEEEEECCCCC-EEEEEECCCCEEEEECcccceeEEeecC
Confidence            35799999999987 5566677899999887766666665543

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=90.79  E-value=5.1  Score=47.26  Aligned_cols=135  Identities=13%  Similarity=0.126  Sum_probs=71.8

Q ss_pred             CCCEEEEEeCCCc-----EEEEECCCCeE--EEEEcccCCCEEEEEEcCCCCEEEEEeCCC------eEEEEECCCCCee
Q 004603          566 DGKLLATGGHDKK-----AVLWCTESFTV--KSTLEEHTQWITDVRFSPSLSRLATSSADR------TVRVWDTENPDYS  632 (743)
Q Consensus       566 dg~~LaSgs~Dg~-----V~IWd~~t~~~--i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg------~VrvWDl~~~~~~  632 (743)
                      +|.+.|+||.||.     |-.||.++.+.  +..+......+-.+.+  ++.+.++|+.|+      +|..||..+....
T Consensus       380 ~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~--~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~  457 (571)
T KOG4441|consen  380 DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVL--GGKLYIIGGGDGSSNCLNSVECYDPETNTWT  457 (571)
T ss_pred             CCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEE--CCEEEEEcCcCCCccccceEEEEcCCCCcee
Confidence            7888999999864     56677655332  1111111112222222  467778887554      5788888876531


Q ss_pred             EE-EEecCCCCeEEEEEecCCCcEEEEEeCCC-----cEEEEECCCCeeeEEE--ecc-Cc-eeeecCCCEEEEEecCCe
Q 004603          633 LR-TFTGHSTTVMSLDFHPSKEDLLCSCDNNS-----EIRYWSINNGSCAGVF--KVC-NL-MPIILKGCFILNSIFNCY  702 (743)
Q Consensus       633 l~-~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg-----~IrvWDl~tg~~v~~~--~~~-~~-i~~s~~g~~l~sgs~Dg~  702 (743)
                      .. .+..-... ..++.-  +..+++.|+.|+     +|..||..+.+....-  ... .. -....++...++|+.|+.
T Consensus       458 ~~~~M~~~R~~-~g~a~~--~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG~~~~  534 (571)
T KOG4441|consen  458 LIAPMNTRRSG-FGVAVL--NGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLYAVGGFDGN  534 (571)
T ss_pred             ecCCccccccc-ceEEEE--CCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEECCEEEEEecccCc
Confidence            11 11111111 123332  245788888776     3788998887654331  111 11 223455666677777765


Q ss_pred             EEE
Q 004603          703 LLL  705 (743)
Q Consensus       703 I~v  705 (743)
                      -.+
T Consensus       535 ~~l  537 (571)
T KOG4441|consen  535 NNL  537 (571)
T ss_pred             ccc
Confidence            444

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=90.60  E-value=26  Score=40.98  Aligned_cols=140  Identities=11%  Similarity=0.086  Sum_probs=79.1

Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEEEEcc--cCCCEEEEEEcC--CCCEEEEEe------CCCeEEEEECCCCCeeEEEE
Q 004603          567 GKLLATGGHDKKAVLWCTESFTVKSTLEE--HTQWITDVRFSP--SLSRLATSS------ADRTVRVWDTENPDYSLRTF  636 (743)
Q Consensus       567 g~~LaSgs~Dg~V~IWd~~t~~~i~~l~~--H~~~V~~vafsp--~~~~LaSgs------~Dg~VrvWDl~~~~~~l~~l  636 (743)
                      +..|+.++.|+.|...|.++++.+-.+..  +... ..+.-.|  .+..|+.+.      .+|.|..+|+++++. +..+
T Consensus       120 ~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~-~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~-lW~~  197 (527)
T TIGR03075       120 DGKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAG-YTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKL-VWRR  197 (527)
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEeeccccccccc-ccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCce-eEec
Confidence            34677788899999999999998765532  1110 1111122  123455543      278999999998775 3322


Q ss_pred             ecC-------------------------------CCCeE-EEEEecCCCcEEEEEeC----CC-----------cEEEEE
Q 004603          637 TGH-------------------------------STTVM-SLDFHPSKEDLLCSCDN----NS-----------EIRYWS  669 (743)
Q Consensus       637 ~~h-------------------------------~~~V~-sl~fsp~g~~lL~Sgs~----Dg-----------~IrvWD  669 (743)
                      ..-                               ...|+ .+.+.|+...+++..+.    ++           .|.-.|
T Consensus       198 ~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld  277 (527)
T TIGR03075       198 YTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARD  277 (527)
T ss_pred             cCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEc
Confidence            110                               01111 23566654433332221    12           577789


Q ss_pred             CCCCeeeEEEeccCc-----------e--eeecCCC---EEEEEecCCeEEEEec
Q 004603          670 INNGSCAGVFKVCNL-----------M--PIILKGC---FILNSIFNCYLLLHRI  708 (743)
Q Consensus       670 l~tg~~v~~~~~~~~-----------i--~~s~~g~---~l~sgs~Dg~I~vh~~  708 (743)
                      +++|+.+..|.....           +  .+..+|.   .++.+..+|.+.+.+-
T Consensus       278 ~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr  332 (527)
T TIGR03075       278 PDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDR  332 (527)
T ss_pred             cccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEEC
Confidence            999998877764211           1  1224565   6777788887777544

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PHA02713 hypothetical protein; Provisional

Probab=90.36  E-value=2.2  Score=50.27  Aligned_cols=108  Identities=9%  Similarity=0.059  Sum_probs=59.7

Q ss_pred             CCCEEEEEeCCC-----------------------cEEEEECCCCeEEE--EEcccCCCEEEEEEcCCCCEEEEEeCC--
Q 004603          566 DGKLLATGGHDK-----------------------KAVLWCTESFTVKS--TLEEHTQWITDVRFSPSLSRLATSSAD--  618 (743)
Q Consensus       566 dg~~LaSgs~Dg-----------------------~V~IWd~~t~~~i~--~l~~H~~~V~~vafsp~~~~LaSgs~D--  618 (743)
                      +|++.+.||.++                       .|..||..+.+...  .+.........+.+  ++...+.|+.+  
T Consensus       398 ~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~--~~~IYv~GG~~~~  475 (557)
T PHA02713        398 DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSH--KDDIYVVCDIKDE  475 (557)
T ss_pred             CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccCcEEEE--CCEEEEEeCCCCC
Confidence            677778887653                       46678876644321  11111111112222  35666777654  


Q ss_pred             ----CeEEEEECCC-CCe-eEEEEecCCCCeEEEEEecCCCcEEEEEeCCC--cEEEEECCCCeeeEE
Q 004603          619 ----RTVRVWDTEN-PDY-SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGV  678 (743)
Q Consensus       619 ----g~VrvWDl~~-~~~-~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg--~IrvWDl~tg~~v~~  678 (743)
                          ..|..||..+ ... .+..+......+..+.+   +..+++.|+.|+  .|-.||..+.+....
T Consensus       476 ~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~---~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~  540 (557)
T PHA02713        476 KNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH---DNTIMMLHCYESYMLQDTFNVYTYEWNHI  540 (557)
T ss_pred             CccceeEEEecCCCCCCeeEccccCcccccceeEEE---CCEEEEEeeecceeehhhcCcccccccch
Confidence                2467899887 443 12233323333333333   345888999888  778888887765433

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=89.47  E-value=8.9  Score=41.44  Aligned_cols=117  Identities=15%  Similarity=0.256  Sum_probs=63.0

Q ss_pred             eCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe
Q 004603          552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY  631 (743)
Q Consensus       552 ~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~  631 (743)
                      .+-.+.|..+..++||++|+++..-....-||--...-...-+.-...|..+.|.|++.+.+.+ ..|.|++=+....  
T Consensus       141 ~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~--  217 (302)
T PF14870_consen  141 SETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDD--  217 (302)
T ss_dssp             -S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTE--
T ss_pred             cCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCC--
Confidence            3445779999999999999998766666778754322222223346789999999997776654 8888888772221  


Q ss_pred             eEEEEec-------CCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCee
Q 004603          632 SLRTFTG-------HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC  675 (743)
Q Consensus       632 ~l~~l~~-------h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~  675 (743)
                       ..++..       -.-.+.+++|.+++. ++++|+ .|.| +.....|+.
T Consensus       218 -~~~w~~~~~~~~~~~~~~ld~a~~~~~~-~wa~gg-~G~l-~~S~DgGkt  264 (302)
T PF14870_consen  218 -GETWSEPIIPIKTNGYGILDLAYRPPNE-IWAVGG-SGTL-LVSTDGGKT  264 (302)
T ss_dssp             -EEEE---B-TTSS--S-EEEEEESSSS--EEEEES-TT-E-EEESSTTSS
T ss_pred             -ccccccccCCcccCceeeEEEEecCCCC-EEEEeC-CccE-EEeCCCCcc
Confidence             122221       112378899998854 665555 4543 344455554

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=89.26  E-value=4  Score=46.02  Aligned_cols=90  Identities=14%  Similarity=0.088  Sum_probs=63.7

Q ss_pred             CceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEE-EEE-cCCC----------
Q 004603          542 GFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITD-VRF-SPSL----------  609 (743)
Q Consensus       542 ~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~-vaf-sp~~----------  609 (743)
                      .........+......+.+|+.+|++++.|+...=|.|.|+|+.++..++.++|..+.=.. +.. ....          
T Consensus       294 ~~~l~~r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~  373 (415)
T PF14655_consen  294 AAPLPMRFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPK  373 (415)
T ss_pred             CcccceEEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccC
Confidence            3445566677778888999999999999999888899999999999998888876543111 111 1111          


Q ss_pred             ------C-EEEEEeCCCeEEEEECCCCCe
Q 004603          610 ------S-RLATSSADRTVRVWDTENPDY  631 (743)
Q Consensus       610 ------~-~LaSgs~Dg~VrvWDl~~~~~  631 (743)
                            . +++-+-.-|.|-||+++.+..
T Consensus       374 ~~~~~~l~LvIyaprRg~lEvW~~~~g~R  402 (415)
T PF14655_consen  374 SSSRFALFLVIYAPRRGILEVWSMRQGPR  402 (415)
T ss_pred             CCCcceEEEEEEeccCCeEEEEecCCCCE
Confidence                  1 234455678888888887664

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=89.18  E-value=11  Score=45.02  Aligned_cols=112  Identities=15%  Similarity=0.137  Sum_probs=74.6

Q ss_pred             eEEEEEcC--CCCEEEEEeCCCcEEEEECCC-------C-------------eEEEEEcccCCCEEEEEEc--CCCCEEE
Q 004603          558 VESCHFSP--DGKLLATGGHDKKAVLWCTES-------F-------------TVKSTLEEHTQWITDVRFS--PSLSRLA  613 (743)
Q Consensus       558 V~siafsp--dg~~LaSgs~Dg~V~IWd~~t-------~-------------~~i~~l~~H~~~V~~vafs--p~~~~La  613 (743)
                      |+-|.+..  +...|+.|.+||.|.+|.+++       .             ++...+. -...++.++++  ...++||
T Consensus       103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIA  181 (717)
T PF08728_consen  103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIA  181 (717)
T ss_pred             eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEE
Confidence            66665544  556899999999999996631       0             0112222 23468999998  7778888


Q ss_pred             EEeCCCeEEEEECCCC--CeeEEEEecCCCCeEEEEEecCC--C---cEEEEEeCCCcEEEEEC
Q 004603          614 TSSADRTVRVWDTENP--DYSLRTFTGHSTTVMSLDFHPSK--E---DLLCSCDNNSEIRYWSI  670 (743)
Q Consensus       614 Sgs~Dg~VrvWDl~~~--~~~l~~l~~h~~~V~sl~fsp~g--~---~lL~Sgs~Dg~IrvWDl  670 (743)
                      .++....|.||-....  +.....-..|...|-+|+|.++.  .   ..+++++-.|.|.+|++
T Consensus       182 VSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  182 VSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            8888888888865431  11111111255678899998764  2   36778888999999887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=89.09  E-value=28  Score=38.11  Aligned_cols=119  Identities=11%  Similarity=0.071  Sum_probs=67.2

Q ss_pred             EEcCCCCEEEEEeCCCcEEEEECCCCeE--EEEEccc----------CCCEEEEEEcCCCCEEEEEeC---CC-------
Q 004603          562 HFSPDGKLLATGGHDKKAVLWCTESFTV--KSTLEEH----------TQWITDVRFSPSLSRLATSSA---DR-------  619 (743)
Q Consensus       562 afspdg~~LaSgs~Dg~V~IWd~~t~~~--i~~l~~H----------~~~V~~vafsp~~~~LaSgs~---Dg-------  619 (743)
                      ++...+..++--+.+|.|+--|+.....  ...+..-          .+.---+++++..++|++--.   ++       
T Consensus       190 ~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgt  269 (342)
T PF06433_consen  190 AYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGT  269 (342)
T ss_dssp             EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EE
T ss_pred             ceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCce
Confidence            3444444444456777777777654332  1122100          011223567765555544321   22       


Q ss_pred             eEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEE-eCCCcEEEEECCCCeeeEEEecc
Q 004603          620 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC-DNNSEIRYWSINNGSCAGVFKVC  682 (743)
Q Consensus       620 ~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sg-s~Dg~IrvWDl~tg~~v~~~~~~  682 (743)
                      .|-++|+.+.+. +..+.- ...+.+|..+.+..-+|++. ..++.|.|||..+|+.+++++..
T Consensus       270 eVWv~D~~t~kr-v~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~l  331 (342)
T PF06433_consen  270 EVWVYDLKTHKR-VARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQL  331 (342)
T ss_dssp             EEEEEETTTTEE-EEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE---
T ss_pred             EEEEEECCCCeE-EEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhcc
Confidence            378889988765 555542 23577999998877677654 45789999999999999888753

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=89.04  E-value=23  Score=36.14  Aligned_cols=103  Identities=16%  Similarity=0.261  Sum_probs=64.3

Q ss_pred             CEEEEEeCCCcEEEEECC--CCeEEEEEcccCCCEEEEEEcCCCCEEEEEeC---CC---eEEEE-ECCCC---CeeEE-
Q 004603          568 KLLATGGHDKKAVLWCTE--SFTVKSTLEEHTQWITDVRFSPSLSRLATSSA---DR---TVRVW-DTENP---DYSLR-  634 (743)
Q Consensus       568 ~~LaSgs~Dg~V~IWd~~--t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~---Dg---~VrvW-Dl~~~---~~~l~-  634 (743)
                      ..|+.+...++|.+|++.  ..+.+.+|.. -+.|..+.++..|++|+|-=.   ..   .+|+| +.+..   ..+++ 
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v  107 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV  107 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence            344444556789999987  3456666654 378999999999999998643   22   66765 32211   11111 


Q ss_pred             EEec---------------------CCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCC
Q 004603          635 TFTG---------------------HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG  673 (743)
Q Consensus       635 ~l~~---------------------h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg  673 (743)
                      .+.|                     -...+.+++.+|-..++++++  ++.+.+|.+...
T Consensus       108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~--~~~l~lf~l~~~  165 (215)
T PF14761_consen  108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC--GNKLVLFTLKYQ  165 (215)
T ss_pred             EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc--CCEEEEEEEEEE
Confidence            1222                     233567888888766677544  468999976543

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=88.31  E-value=14  Score=40.93  Aligned_cols=99  Identities=9%  Similarity=0.051  Sum_probs=54.7

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC-----eE--E-EEEcc----cCCCEEEEEEcCCCCEEEEEeCC----
Q 004603          555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-----TV--K-STLEE----HTQWITDVRFSPSLSRLATSSAD----  618 (743)
Q Consensus       555 ~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~-----~~--i-~~l~~----H~~~V~~vafsp~~~~LaSgs~D----  618 (743)
                      -...+.++|.+++ +++ ++.+...++.|.+..     +.  + ..+..    +...+..++|.|+|.+.++-+..    
T Consensus        71 l~~p~Gi~~~~~G-lyV-~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~  148 (367)
T TIGR02604        71 LSMVTGLAVAVGG-VYV-ATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASK  148 (367)
T ss_pred             CCCccceeEecCC-EEE-eCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCce
Confidence            3456889999888 444 444544444455321     21  1 12222    13347789999998876655521    


Q ss_pred             ---------------CeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEE
Q 004603          619 ---------------RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS  658 (743)
Q Consensus       619 ---------------g~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~S  658 (743)
                                     +.|.-+|.+...  +..+.........++|+|+|. ++++
T Consensus       149 ~~~~~~~~~~~~~~~g~i~r~~pdg~~--~e~~a~G~rnp~Gl~~d~~G~-l~~t  200 (367)
T TIGR02604       149 VTRPGTSDESRQGLGGGLFRYNPDGGK--LRVVAHGFQNPYGHSVDSWGD-VFFC  200 (367)
T ss_pred             eccCCCccCcccccCceEEEEecCCCe--EEEEecCcCCCccceECCCCC-EEEE
Confidence                           345555555433  233322223457899999886 4444

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PRK13684 Ycf48-like protein; Provisional

Probab=88.12  E-value=25  Score=38.50  Aligned_cols=113  Identities=16%  Similarity=0.213  Sum_probs=62.5

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEE-EECCCCe-EEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCee
Q 004603          555 TSKVESCHFSPDGKLLATGGHDKKAVL-WCTESFT-VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS  632 (743)
Q Consensus       555 ~~~V~siafspdg~~LaSgs~Dg~V~I-Wd~~t~~-~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~  632 (743)
                      .+.+.++.+.+++.+++++. .|.+.. +| +.++ -......-...++++.+.+++..++.+ ..|.+++=..+.+.. 
T Consensus       172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~s-  247 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLES-  247 (334)
T ss_pred             cceEEEEEECCCCeEEEEeC-CceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCc-
Confidence            45689999999987776655 454432 22 1222 111222334678999999988876665 467765322333221 


Q ss_pred             EEEEec----CCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCe
Q 004603          633 LRTFTG----HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS  674 (743)
Q Consensus       633 l~~l~~----h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~  674 (743)
                      -.....    ....+.++.|.+++. +++ ++.+|.|. .....++
T Consensus       248 W~~~~~~~~~~~~~l~~v~~~~~~~-~~~-~G~~G~v~-~S~d~G~  290 (334)
T PRK13684        248 WSKPIIPEITNGYGYLDLAYRTPGE-IWA-GGGNGTLL-VSKDGGK  290 (334)
T ss_pred             cccccCCccccccceeeEEEcCCCC-EEE-EcCCCeEE-EeCCCCC
Confidence            111111    123478899998765 553 44466443 3444443

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=87.11  E-value=53  Score=40.45  Aligned_cols=125  Identities=13%  Similarity=-0.001  Sum_probs=71.4

Q ss_pred             cEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecC--CCc-
Q 004603          578 KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS--KED-  654 (743)
Q Consensus       578 ~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~--g~~-  654 (743)
                      .||+++-.  ..+..+.. ...+++....-+...++.++.++.+...++.........-+..+..|.|++++|-  ++. 
T Consensus       471 ~iRl~ss~--~~~~~W~~-p~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~  547 (1096)
T KOG1897|consen  471 SIRLVSSA--GLRSEWRP-PGKITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNK  547 (1096)
T ss_pred             cEEEEcch--hhhhcccC-CCceEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCc
Confidence            46666533  12333332 3445554445555678888878888888887655211112223467899999976  444 


Q ss_pred             --EEEEEeCCCcEEEEE-CCCCeeeEEE--ecc---Cc---eeeecCCCEEEEEecCCeEEE
Q 004603          655 --LLCSCDNNSEIRYWS-INNGSCAGVF--KVC---NL---MPIILKGCFILNSIFNCYLLL  705 (743)
Q Consensus       655 --lL~Sgs~Dg~IrvWD-l~tg~~v~~~--~~~---~~---i~~s~~g~~l~sgs~Dg~I~v  705 (743)
                        +++.|..+..+.+.- +.....+...  .+.   .+   ..+-.+..||.++..||.+..
T Consensus       548 s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~  609 (1096)
T KOG1897|consen  548 SRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLY  609 (1096)
T ss_pred             ceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEE
Confidence              788887776655543 3333333222  111   11   223356789999999988765

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=87.02  E-value=44  Score=35.51  Aligned_cols=140  Identities=11%  Similarity=0.009  Sum_probs=90.2

Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEe
Q 004603          558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT  637 (743)
Q Consensus       558 V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~  637 (743)
                      -..|+-.|||..-+++...+.|--.|..+++....--+....-..|...||+..-++-+.. -|.-.|-++.......+.
T Consensus        64 p~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~lp  142 (353)
T COG4257          64 PFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPLP  142 (353)
T ss_pred             ccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeecc
Confidence            5678888999999999888888888999988877666656666778888988877765444 455556655443222222


Q ss_pred             --cCCCCeEEEEEecCCCcEEEEEeCC---------CcEEEEECCCCeeeEEEeccCceeeecCCCEEEEEecCCeEEE
Q 004603          638 --GHSTTVMSLDFHPSKEDLLCSCDNN---------SEIRYWSINNGSCAGVFKVCNLMPIILKGCFILNSIFNCYLLL  705 (743)
Q Consensus       638 --~h~~~V~sl~fsp~g~~lL~Sgs~D---------g~IrvWDl~tg~~v~~~~~~~~i~~s~~g~~l~sgs~Dg~I~v  705 (743)
                        .-........|.+.|. +.+++...         +.|+||+...|.      +...+|..|+|..-++.-.+..|..
T Consensus       143 ~~~a~~nlet~vfD~~G~-lWFt~q~G~yGrLdPa~~~i~vfpaPqG~------gpyGi~atpdGsvwyaslagnaiar  214 (353)
T COG4257         143 LEHADANLETAVFDPWGN-LWFTGQIGAYGRLDPARNVISVFPAPQGG------GPYGICATPDGSVWYASLAGNAIAR  214 (353)
T ss_pred             cccCCCcccceeeCCCcc-EEEeeccccceecCcccCceeeeccCCCC------CCcceEECCCCcEEEEeccccceEE
Confidence              2234567788999876 55566421         245555544321      2345777888877666555444443

>PRK10350 hypothetical protein; Provisional

Probab=87.01  E-value=2  Score=39.41  Aligned_cols=16  Identities=31%  Similarity=0.403  Sum_probs=7.8

Q ss_pred             cccccccchhh-HHHHH
Q 004603           68 NEKHSESAASY-IESQV   83 (743)
Q Consensus        68 ~~~~s~~a~qY-iq~q~   83 (743)
                      +..++.....| |..++
T Consensus        21 N~~NNPnqpGY~ipSQQ   37 (145)
T PRK10350         21 NTLNNPNQPGYQIPSQQ   37 (145)
T ss_pred             hccCCCCCCCCcCcHHH
Confidence            33444455667 44443

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=86.71  E-value=4.1  Score=41.87  Aligned_cols=73  Identities=15%  Similarity=0.177  Sum_probs=50.2

Q ss_pred             EcCCCCEEEEEeCCCeEEEEECCCCCeeEEE------Ee-------cCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECC
Q 004603          605 FSPSLSRLATSSADRTVRVWDTENPDYSLRT------FT-------GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN  671 (743)
Q Consensus       605 fsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~------l~-------~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~  671 (743)
                      +..++.+|++-+.+|.+++||+.+.+..+..      +.       .....|..+.+..+|.- +++-+ +|..++||..
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~P-iV~ls-ng~~y~y~~~   95 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVP-IVTLS-NGDSYSYSPD   95 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCE-EEEEe-CCCEEEeccc
Confidence            3446788999999999999999986642222      11       24467888888877764 44554 5788999887


Q ss_pred             CCeeeEEE
Q 004603          672 NGSCAGVF  679 (743)
Q Consensus       672 tg~~v~~~  679 (743)
                      -+..+...
T Consensus        96 L~~W~~vs  103 (219)
T PF07569_consen   96 LGCWIRVS  103 (219)
T ss_pred             cceeEEec
Confidence            66554433

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=86.59  E-value=2.5  Score=31.77  Aligned_cols=31  Identities=39%  Similarity=0.623  Sum_probs=26.2

Q ss_pred             CCeEEEEEcCC-C--CEEEEEeCCCcEEEEECCC
Q 004603          556 SKVESCHFSPD-G--KLLATGGHDKKAVLWCTES  586 (743)
Q Consensus       556 ~~V~siafspd-g--~~LaSgs~Dg~V~IWd~~t  586 (743)
                      +.|.+|.|+|+ +  .+|+.+-.-+.|.|+|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            46999999984 4  5888888889999999985

It contains a characteristic DLL sequence motif.

>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins

Probab=86.32  E-value=23  Score=40.00  Aligned_cols=165  Identities=13%  Similarity=0.072  Sum_probs=61.0

Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECC-------CCeEEEEE-cccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004603          558 VESCHFSPDGKLLATGGHDKKAVLWCTE-------SFTVKSTL-EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP  629 (743)
Q Consensus       558 V~siafspdg~~LaSgs~Dg~V~IWd~~-------t~~~i~~l-~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~  629 (743)
                      ..+..+...|.-+++.  |..+.||+..       .+.....+ .++...+.+|        ++.....|.|++|+--..
T Consensus        29 ~~~gi~~e~g~Aw~~~--d~~l~vW~Y~~~~~s~~~~~~~~~~~~~~~~~i~~v--------~lv~p~~G~v~f~~~I~~   98 (422)
T PF08801_consen   29 CSMGIFPEIGRAWIVV--DNRLYVWNYSSTQSSPNDGSDFPLFDDGSSSSIPGV--------GLVKPKTGRVVFWESISH   98 (422)
T ss_dssp             -EEEEE-TTSEEEEEE--TTEEEEEE--SS--GG--EEEEE-----------SE--------EEEE-TT-EEEEES-TT-
T ss_pred             eEEEEEcccCEEEEEE--CCEEEEEeccCCCCCcCcccccceecCCCCCCCceE--------EEEEcCCCCEEecccchh
Confidence            4444454455444443  7889999984       33333334 3444444433        344556889999975332


Q ss_pred             CeeEEE-------------EecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEeccCcee----eecCCC
Q 004603          630 DYSLRT-------------FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNLMP----IILKGC  692 (743)
Q Consensus       630 ~~~l~~-------------l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~~~~i~----~s~~g~  692 (743)
                      ...+.+             +....-.+......+.+  + +.+..+|.|.....+....+..+.......    +.....
T Consensus        99 ~l~~~t~~~i~l~gv~~~~l~~~e~~~~~~~~~~~~--~-I~~ts~GRif~~~~~~~~g~~~l~y~~~~~~~~~i~~~~~  175 (422)
T PF08801_consen   99 LLVLATPSQISLLGVSYSELLSGELSTSLTNVEPSG--F-IVSTSTGRIFFLGIRDSNGKYELSYQQLSGRCSKINHTSS  175 (422)
T ss_dssp             TT--EEEE------------------EEEEEEETTT--E-EEEETT--EEEEEE-TTS-EEEEE-TT-------------
T ss_pred             hhhcCccccccccccceeeecCCceEEECCCCceEE--E-EEECCCCeEEEEeCCCCCCcEEEEEEcCcCCccccccccC
Confidence            211111             11111122223445543  3 345557777777666644444443321100    000000


Q ss_pred             EEEEEecCCeEE-EEecccceEEEEecCCCCEEEEEeCCCeEEEeCCC
Q 004603          693 FILNSIFNCYLL-LHRIFLNLLSVSEWCNPDEISTSSWKDSCCSHREL  739 (743)
Q Consensus       693 ~l~sgs~Dg~I~-vh~~~v~~l~v~~~~~~~~laSgs~DG~V~iWd~~  739 (743)
                      .++.+-    +. ..........+..+.....+++...+|.|.+|+-.
T Consensus       176 ~~~~~~----~p~~~~~~~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~  219 (422)
T PF08801_consen  176 SIFSSL----LPSFSDPRPKIVQVAVDPSRRLLYTLTSDGSIQVWDLG  219 (422)
T ss_dssp             --------------------EEEEEEETTTTEEEEEESSE-EEEEEE-
T ss_pred             ceeccc----cCCcccchhceeeEEecCCcCEEEEEeCCCcEEEEEEe
Confidence            111110    00 01111113333444446899999999999999753

RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=85.82  E-value=28  Score=32.95  Aligned_cols=115  Identities=16%  Similarity=0.083  Sum_probs=69.1

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCC--------eEEEEEcccCCCEEEEEE---cC--CCCEEEEEeCCCeEEEEEC
Q 004603          560 SCHFSPDGKLLATGGHDKKAVLWCTESF--------TVKSTLEEHTQWITDVRF---SP--SLSRLATSSADRTVRVWDT  626 (743)
Q Consensus       560 siafspdg~~LaSgs~Dg~V~IWd~~t~--------~~i~~l~~H~~~V~~vaf---sp--~~~~LaSgs~Dg~VrvWDl  626 (743)
                      .-.|......|+.++.-++|.|++....        ..++.+.- ...|++++-   .|  ....|+.|+ ...|..||+
T Consensus         3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNi-n~~italaaG~l~~~~~~D~LliGt-~t~llaYDV   80 (136)
T PF14781_consen    3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNI-NQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDV   80 (136)
T ss_pred             EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEEC-CCceEEEEEEecCCCCCcCEEEEec-cceEEEEEc
Confidence            3345555557888888889999986532        23344432 345777654   33  244566665 678999999


Q ss_pred             CCCCeeEEEEecCCCCeEEEEEecC---CCcEEEEEeCCCcEEEEECCCCeeeEEE
Q 004603          627 ENPDYSLRTFTGHSTTVMSLDFHPS---KEDLLCSCDNNSEIRYWSINNGSCAGVF  679 (743)
Q Consensus       627 ~~~~~~l~~l~~h~~~V~sl~fsp~---g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~  679 (743)
                      .....  ..++.-...|.++.+-.-   ...+++.|+ ++.|.-||....+...+.
T Consensus        81 ~~N~d--~Fyke~~DGvn~i~~g~~~~~~~~l~ivGG-ncsi~Gfd~~G~e~fWtV  133 (136)
T PF14781_consen   81 ENNSD--LFYKEVPDGVNAIVIGKLGDIPSPLVIVGG-NCSIQGFDYEGNEIFWTV  133 (136)
T ss_pred             ccCch--hhhhhCccceeEEEEEecCCCCCcEEEECc-eEEEEEeCCCCcEEEEEe
Confidence            87664  233344567888776321   123444444 778888887755554433

>PRK13684 Ycf48-like protein; Provisional

Probab=85.63  E-value=60  Score=35.52  Aligned_cols=138  Identities=14%  Similarity=0.046  Sum_probs=73.2

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCeEE-EEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCee
Q 004603          597 TQWITDVRFSPSLSRLATSSADRTVR-VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC  675 (743)
Q Consensus       597 ~~~V~~vafsp~~~~LaSgs~Dg~Vr-vWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~  675 (743)
                      ...+.++.+.|++.+++++. .|.+. .+|-. +..-......-...++++.+.+++. +++.+ ..|.+++=..+.|..
T Consensus       172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~~g-g~tW~~~~~~~~~~l~~i~~~~~g~-~~~vg-~~G~~~~~s~d~G~s  247 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWEPG-QTAWTPHQRNSSRRLQSMGFQPDGN-LWMLA-RGGQIRFNDPDDLES  247 (334)
T ss_pred             cceEEEEEECCCCeEEEEeC-CceEEEEcCCC-CCeEEEeeCCCcccceeeeEcCCCC-EEEEe-cCCEEEEccCCCCCc
Confidence            45688999999887666654 55443 33322 1111112223346789999999876 44343 456665333344432


Q ss_pred             eEEEe--------ccCceeeecCCCEEEEEecCCeEEE-------Eeccc--c-----eEEEEecCCCCEEEEEeCCCeE
Q 004603          676 AGVFK--------VCNLMPIILKGCFILNSIFNCYLLL-------HRIFL--N-----LLSVSEWCNPDEISTSSWKDSC  733 (743)
Q Consensus       676 v~~~~--------~~~~i~~s~~g~~l~sgs~Dg~I~v-------h~~~v--~-----~l~v~~~~~~~~laSgs~DG~V  733 (743)
                      -....        ....+.+.+++..+ ..+.+|.+..       |....  .     ...+.. .+....+..+..|.|
T Consensus       248 W~~~~~~~~~~~~~l~~v~~~~~~~~~-~~G~~G~v~~S~d~G~tW~~~~~~~~~~~~~~~~~~-~~~~~~~~~G~~G~i  325 (334)
T PRK13684        248 WSKPIIPEITNGYGYLDLAYRTPGEIW-AGGGNGTLLVSKDGGKTWEKDPVGEEVPSNFYKIVF-LDPEKGFVLGQRGVL  325 (334)
T ss_pred             cccccCCccccccceeeEEEcCCCCEE-EEcCCCeEEEeCCCCCCCeECCcCCCCCcceEEEEE-eCCCceEEECCCceE
Confidence            22111        11234556666544 4455665555       32210  0     111222 235567778899999


Q ss_pred             EEeCCCc
Q 004603          734 CSHRELY  740 (743)
Q Consensus       734 ~iWd~~~  740 (743)
                      ..|+...
T Consensus       326 l~~~~~~  332 (334)
T PRK13684        326 LRYVGSA  332 (334)
T ss_pred             EEecCCC
Confidence            9998764

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=85.27  E-value=73  Score=36.13  Aligned_cols=58  Identities=16%  Similarity=0.249  Sum_probs=42.4

Q ss_pred             CEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 004603          568 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT  626 (743)
Q Consensus       568 ~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl  626 (743)
                      .+|++=+-||.+.+|+-+..-..+.+.. ----..+.|.+..+.|++++.+..|..|..
T Consensus       146 ~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~sss~~l~~Yky  203 (418)
T PF14727_consen  146 DFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTASSSWTLECYKY  203 (418)
T ss_pred             eEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEecCceeEEEecH
Confidence            4677788899999998776544444433 222345677787889999999999999975

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=85.27  E-value=57  Score=34.94  Aligned_cols=122  Identities=13%  Similarity=0.240  Sum_probs=79.5

Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEE-------EEc--cc-CCCEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 004603          558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS-------TLE--EH-TQWITDVRFSPSLSRLATSSADRTVRVWDTE  627 (743)
Q Consensus       558 V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i~-------~l~--~H-~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~  627 (743)
                      ...|.|..++.++++--.++.+.++.++....+.       .+.  .+ ......++|+|....|+.+-.-.-++||.+.
T Consensus       131 pE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~  210 (316)
T COG3204         131 PETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVT  210 (316)
T ss_pred             hhHeEEecCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEe
Confidence            3456777777777777778888877665432111       111  12 4557789999988888888888888888765


Q ss_pred             CCCee--EEEEecCC-------CCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEe
Q 004603          628 NPDYS--LRTFTGHS-------TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK  680 (743)
Q Consensus       628 ~~~~~--l~~l~~h~-------~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~  680 (743)
                      .....  +.....+.       ..|.++.|++....+|+-+.+++.|...|+. |..+..+.
T Consensus       211 ~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~-G~~~~~ls  271 (316)
T COG3204         211 QSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLS-GEVIELLS  271 (316)
T ss_pred             cCCcccccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecC-CCeeeeEE
Confidence            43211  11111222       3477889998888899889988888888876 44444443

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=85.19  E-value=58  Score=35.19  Aligned_cols=106  Identities=8%  Similarity=0.075  Sum_probs=51.5

Q ss_pred             CCCEEEEEeCC-----CcEEEEECCCCeEE---EEEcc---cCCCEEEEEEcCCCCEEEEEeC-----CCeEEEEECCCC
Q 004603          566 DGKLLATGGHD-----KKAVLWCTESFTVK---STLEE---HTQWITDVRFSPSLSRLATSSA-----DRTVRVWDTENP  629 (743)
Q Consensus       566 dg~~LaSgs~D-----g~V~IWd~~t~~~i---~~l~~---H~~~V~~vafsp~~~~LaSgs~-----Dg~VrvWDl~~~  629 (743)
                      ++.+++.|+.+     ..|..||+.+.+..   ..+..   ......++.+  ++.+++.|+.     ...|.+||+.+.
T Consensus        72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~--~~~iYv~GG~~~~~~~~~v~~yd~~~~  149 (323)
T TIGR03548        72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK--DGTLYVGGGNRNGKPSNKSYLFNLETQ  149 (323)
T ss_pred             CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE--CCEEEEEeCcCCCccCceEEEEcCCCC
Confidence            56677777754     34666777654431   12211   1111112222  3556666664     235888898875


Q ss_pred             CeeEE-EEecCCCCeEEEEEecCCCcEEEEEeCCC----cEEEEECCCCee
Q 004603          630 DYSLR-TFTGHSTTVMSLDFHPSKEDLLCSCDNNS----EIRYWSINNGSC  675 (743)
Q Consensus       630 ~~~l~-~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg----~IrvWDl~tg~~  675 (743)
                      ..... .+.. .......+..-+ ..+++.|+.++    .+.+||+.+.+.
T Consensus       150 ~W~~~~~~p~-~~r~~~~~~~~~-~~iYv~GG~~~~~~~~~~~yd~~~~~W  198 (323)
T TIGR03548       150 EWFELPDFPG-EPRVQPVCVKLQ-NELYVFGGGSNIAYTDGYKYSPKKNQW  198 (323)
T ss_pred             CeeECCCCCC-CCCCcceEEEEC-CEEEEEcCCCCccccceEEEecCCCee
Confidence            53111 1111 111111222223 34777777654    356889887654

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.10  E-value=15  Score=41.26  Aligned_cols=117  Identities=17%  Similarity=0.190  Sum_probs=74.5

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEE----EEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004603          554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK----STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP  629 (743)
Q Consensus       554 H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~i----~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~  629 (743)
                      ..++|.+|.||+|.+.||+--.|++|-+++....+..    .+.+..+..|....|..+.. +|.-. |.-|-+|-+...
T Consensus        65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~e-~A~i~-~~G~e~y~v~pe  142 (657)
T KOG2377|consen   65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSSTE-IAFIT-DQGIEFYQVLPE  142 (657)
T ss_pred             CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCee-EEEEe-cCCeEEEEEchh
Confidence            4568999999999999999999999999987332221    11122344578888876533 33333 334666665554


Q ss_pred             CeeEEEEecCCCCeEEEEEecCCCcEEEEEe-CCCcEEEEECCC
Q 004603          630 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD-NNSEIRYWSINN  672 (743)
Q Consensus       630 ~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs-~Dg~IrvWDl~t  672 (743)
                      +..++..+.|.-.|.=..|+++-..+|.+.+ ..+++.=+-+++
T Consensus       143 krslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~  186 (657)
T KOG2377|consen  143 KRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRA  186 (657)
T ss_pred             hhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEee
Confidence            4456667778888888888888665444444 333333344443

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=85.06  E-value=56  Score=34.60  Aligned_cols=117  Identities=15%  Similarity=0.094  Sum_probs=72.9

Q ss_pred             eEEEEEcCCCCEEEEEeCCC--cEEEEECCCCeEEEEEccc-CCCEEEEEEcCCCCEEEEEe-CCCeEEEEECCCCCeeE
Q 004603          558 VESCHFSPDGKLLATGGHDK--KAVLWCTESFTVKSTLEEH-TQWITDVRFSPSLSRLATSS-ADRTVRVWDTENPDYSL  633 (743)
Q Consensus       558 V~siafspdg~~LaSgs~Dg--~V~IWd~~t~~~i~~l~~H-~~~V~~vafsp~~~~LaSgs-~Dg~VrvWDl~~~~~~l  633 (743)
                      .-.+.|..+|.++-+.+.-|  .|+.+|+.+++.+....-. .-.-..++..  ++.|+--. .++...+||..+.+. +
T Consensus        47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~~-~  123 (264)
T PF05096_consen   47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLKK-I  123 (264)
T ss_dssp             EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTEE-E
T ss_pred             CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccceE-E
Confidence            45788877888888888776  6889999999876554321 2222233333  23444333 488999999988654 6


Q ss_pred             EEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEec
Q 004603          634 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKV  681 (743)
Q Consensus       634 ~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~  681 (743)
                      .++. ..+.-+.|+.  ++..++.|-+ ...|+++|..+.+.++.+..
T Consensus       124 ~~~~-y~~EGWGLt~--dg~~Li~SDG-S~~L~~~dP~~f~~~~~i~V  167 (264)
T PF05096_consen  124 GTFP-YPGEGWGLTS--DGKRLIMSDG-SSRLYFLDPETFKEVRTIQV  167 (264)
T ss_dssp             EEEE--SSS--EEEE--CSSCEEEE-S-SSEEEEE-TTT-SEEEEEE-
T ss_pred             EEEe-cCCcceEEEc--CCCEEEEECC-ccceEEECCcccceEEEEEE
Confidence            6665 3455677874  4566776655 55899999988877766653

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=84.59  E-value=1.1e+02  Score=37.59  Aligned_cols=65  Identities=6%  Similarity=0.067  Sum_probs=44.0

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCE-------------EEEEEcC--CCCEEEEEeC----------CCe
Q 004603          566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWI-------------TDVRFSP--SLSRLATSSA----------DRT  620 (743)
Q Consensus       566 dg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V-------------~~vafsp--~~~~LaSgs~----------Dg~  620 (743)
                      ++..|+.++.|+.|.-.|.++++.+..|.. .+.|             ..+.-.|  .+..+++|+.          +|.
T Consensus       259 ~~~rV~~~T~Dg~LiALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~  337 (764)
T TIGR03074       259 CARRIILPTSDARLIALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGV  337 (764)
T ss_pred             cCCEEEEecCCCeEEEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcE
Confidence            445788888999999999999998876632 2111             1111223  2446666643          688


Q ss_pred             EEEEECCCCCe
Q 004603          621 VRVWDTENPDY  631 (743)
Q Consensus       621 VrvWDl~~~~~  631 (743)
                      |+-+|+++++.
T Consensus       338 I~A~Da~TGkl  348 (764)
T TIGR03074       338 IRAFDVNTGAL  348 (764)
T ss_pred             EEEEECCCCcE
Confidence            99999999875

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PHA03098 kelch-like protein; Provisional

Probab=84.49  E-value=20  Score=41.72  Aligned_cols=106  Identities=8%  Similarity=0.032  Sum_probs=52.3

Q ss_pred             CCCEEEEEeCC-----CcEEEEECCCCeEEEE--EcccCCCEEEEEEcCCCCEEEEEeCC------CeEEEEECCCCCee
Q 004603          566 DGKLLATGGHD-----KKAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLATSSAD------RTVRVWDTENPDYS  632 (743)
Q Consensus       566 dg~~LaSgs~D-----g~V~IWd~~t~~~i~~--l~~H~~~V~~vafsp~~~~LaSgs~D------g~VrvWDl~~~~~~  632 (743)
                      ++++++.||.+     ..+..||..+......  +.........+.  -++..++.|+.+      ..|.+||+.+....
T Consensus       342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~--~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~  419 (534)
T PHA03098        342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVN--VNNLIYVIGGISKNDELLKTVECFSLNTNKWS  419 (534)
T ss_pred             CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEE--ECCEEEEECCcCCCCcccceEEEEeCCCCeee
Confidence            67788888865     3466788766443211  111111111122  245666666632      45888998765431


Q ss_pred             EE-EEecCCCCeEEEEEecCCCcEEEEEeCCC--------cEEEEECCCCeee
Q 004603          633 LR-TFTGHSTTVMSLDFHPSKEDLLCSCDNNS--------EIRYWSINNGSCA  676 (743)
Q Consensus       633 l~-~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg--------~IrvWDl~tg~~v  676 (743)
                      .. .+...... .+++.. + ..+++.|+.+.        .+.+||..+++..
T Consensus       420 ~~~~~p~~r~~-~~~~~~-~-~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~  469 (534)
T PHA03098        420 KGSPLPISHYG-GCAIYH-D-GKIYVIGGISYIDNIKVYNIVESYNPVTNKWT  469 (534)
T ss_pred             ecCCCCccccC-ceEEEE-C-CEEEEECCccCCCCCcccceEEEecCCCCcee
Confidence            11 01101111 122222 2 34666666432        3888998877643

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=84.32  E-value=3.4  Score=31.00  Aligned_cols=32  Identities=19%  Similarity=0.322  Sum_probs=26.4

Q ss_pred             CCeEEEEEecCCC--cEEEEEeCCCcEEEEECCC
Q 004603          641 TTVMSLDFHPSKE--DLLCSCDNNSEIRYWSINN  672 (743)
Q Consensus       641 ~~V~sl~fsp~g~--~lL~Sgs~Dg~IrvWDl~t  672 (743)
                      +.|.++.|+|...  .+|+..-.-+.|.|+|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            3688999998654  6887777788999999995

It contains a characteristic DLL sequence motif.

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=83.90  E-value=67  Score=35.86  Aligned_cols=137  Identities=10%  Similarity=0.052  Sum_probs=74.1

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcC----CCCE--E-EEEeCC---CeEEEEECCCCCeeEEE
Q 004603          566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP----SLSR--L-ATSSAD---RTVRVWDTENPDYSLRT  635 (743)
Q Consensus       566 dg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp----~~~~--L-aSgs~D---g~VrvWDl~~~~~~l~~  635 (743)
                      ...+|+....++-+.+||+. ++.+..+..  +.+.-|....    .+..  | +++..+   .+|++|.+......+..
T Consensus        67 ~kSlIigTdK~~GL~VYdL~-Gk~lq~~~~--Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~  143 (381)
T PF02333_consen   67 AKSLIIGTDKKGGLYVYDLD-GKELQSLPV--GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTD  143 (381)
T ss_dssp             GG-EEEEEETTTEEEEEETT-S-EEEEE-S--S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE
T ss_pred             ccceEEEEeCCCCEEEEcCC-CcEEEeecC--CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceE
Confidence            44577777788889999987 455555532  2333332211    2332  3 333332   47999977632222443


Q ss_pred             Eec-------CCCCeEEEEEe--c-CCCcEEEEEeCCCcEEEEECC---CC----eeeEEEeccC---ceeeecCCCEEE
Q 004603          636 FTG-------HSTTVMSLDFH--P-SKEDLLCSCDNNSEIRYWSIN---NG----SCAGVFKVCN---LMPIILKGCFIL  695 (743)
Q Consensus       636 l~~-------h~~~V~sl~fs--p-~g~~lL~Sgs~Dg~IrvWDl~---tg----~~v~~~~~~~---~i~~s~~g~~l~  695 (743)
                      +..       -...++.+|+-  + +|..+++....+|.+..|-+.   .+    +.++.|...+   .+.+.....+|+
T Consensus       144 v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~g~LY  223 (381)
T PF02333_consen  144 VTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDETGRLY  223 (381)
T ss_dssp             -CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTTTEEE
T ss_pred             cCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecccCCEE
Confidence            321       12347888874  3 355666677888988888764   33    4577777543   345555566777


Q ss_pred             EEecCCeEEE
Q 004603          696 NSIFNCYLLL  705 (743)
Q Consensus       696 sgs~Dg~I~v  705 (743)
                      .+-++.-|..
T Consensus       224 vgEE~~GIW~  233 (381)
T PF02333_consen  224 VGEEDVGIWR  233 (381)
T ss_dssp             EEETTTEEEE
T ss_pred             EecCccEEEE
Confidence            7766644433

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=83.83  E-value=45  Score=40.98  Aligned_cols=120  Identities=18%  Similarity=0.229  Sum_probs=71.9

Q ss_pred             CCCCCeEEEEEc---C----CCCEEEEEeCCCcEEEEEC------CC---------CeEEEEEccc---CCCEEEEEEcC
Q 004603          553 ASTSKVESCHFS---P----DGKLLATGGHDKKAVLWCT------ES---------FTVKSTLEEH---TQWITDVRFSP  607 (743)
Q Consensus       553 ~H~~~V~siafs---p----dg~~LaSgs~Dg~V~IWd~------~t---------~~~i~~l~~H---~~~V~~vafsp  607 (743)
                      .-..+|..|+|.   .    ..++|++= ....+.|+..      ..         ..++..+..+   .....+|+|+|
T Consensus        77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vr-t~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP  155 (765)
T PF10214_consen   77 DDGSPIKQIKFATLSESFDEKSRWLAVR-TETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP  155 (765)
T ss_pred             CCCCCeeEEEecccccccCCcCcEEEEE-cCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence            455678888887   2    22355544 3455666651      11         1234444322   23577899999


Q ss_pred             -CCCEEEEEeCCCeEEEEECCC----CCeeEEEEecCCC----------CeEEEEEecCCCcEEEEEeCCCcEEEEECCC
Q 004603          608 -SLSRLATSSADRTVRVWDTEN----PDYSLRTFTGHST----------TVMSLDFHPSKEDLLCSCDNNSEIRYWSINN  672 (743)
Q Consensus       608 -~~~~LaSgs~Dg~VrvWDl~~----~~~~l~~l~~h~~----------~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~t  672 (743)
                       +...||..+..|...|||+..    ....+.....+.+          .-..|+|.++...+| .|+ ...+.++|+++
T Consensus       156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lL-v~~-r~~l~~~d~~~  233 (765)
T PF10214_consen  156 WDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLL-VCN-RSKLMLIDFES  233 (765)
T ss_pred             CccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEE-EEc-CCceEEEECCC
Confidence             467899999999999999921    1111111111222          234788988766566 444 45799999987


Q ss_pred             Cee
Q 004603          673 GSC  675 (743)
Q Consensus       673 g~~  675 (743)
                      ...
T Consensus       234 ~~~  236 (765)
T PF10214_consen  234 NWQ  236 (765)
T ss_pred             CCc
Confidence            754

These proteins are found in fungi.

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=83.77  E-value=61  Score=39.83  Aligned_cols=125  Identities=10%  Similarity=0.101  Sum_probs=77.3

Q ss_pred             eeEEEeeC---CCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCC-----eEEEEEcccCC----------CEEEEEEc
Q 004603          546 TEFQLIPA---STSKVESCHFSP-DGKLLATGGHDKKAVLWCTESF-----TVKSTLEEHTQ----------WITDVRFS  606 (743)
Q Consensus       546 ~~~~~l~~---H~~~V~siafsp-dg~~LaSgs~Dg~V~IWd~~t~-----~~i~~l~~H~~----------~V~~vafs  606 (743)
                      .++..+..   -..+..+|+|+| +.+.||+-...|...||++...     ..+.....+.+          .-..|.|.
T Consensus       133 ~~l~~i~~~~tgg~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~  212 (765)
T PF10214_consen  133 NPLLTISSSDTGGFPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWV  212 (765)
T ss_pred             ceeEEechhhcCCCccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEec
Confidence            44444442   223577899999 6679999999999999999211     11111111122          23478888


Q ss_pred             CCCCEEEEEeCCCeEEEEECCCCCeeE-EEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEECCC
Q 004603          607 PSLSRLATSSADRTVRVWDTENPDYSL-RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN  672 (743)
Q Consensus       607 p~~~~LaSgs~Dg~VrvWDl~~~~~~l-~~l~~h~~~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~t  672 (743)
                      ++.+.|+.++ ...+.++|+++....- .........|.++.-+|.....++.-. ..+|...|+..
T Consensus       213 ~~~~~lLv~~-r~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT-s~eiiw~~~~~  277 (765)
T PF10214_consen  213 SDSNRLLVCN-RSKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT-SKEIIWLDVKS  277 (765)
T ss_pred             CCCCEEEEEc-CCceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEe-cCeEEEEEccC
Confidence            8877777775 5678899998765411 122234467888888887333222222 35788888876

These proteins are found in fungi.

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=83.06  E-value=22  Score=38.81  Aligned_cols=102  Identities=17%  Similarity=0.226  Sum_probs=54.8

Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE---EEEE----cccCCCEEEEEEcCC---CCEEE-EEeCC--------
Q 004603          558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTV---KSTL----EEHTQWITDVRFSPS---LSRLA-TSSAD--------  618 (743)
Q Consensus       558 V~siafspdg~~LaSgs~Dg~V~IWd~~t~~~---i~~l----~~H~~~V~~vafsp~---~~~La-Sgs~D--------  618 (743)
                      .+.|+|.|||++|++ ...|.|++++ ..+..   +..+    .........++|+|+   ..+|+ +.+..        
T Consensus         4 P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~   81 (331)
T PF07995_consen    4 PRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND   81 (331)
T ss_dssp             EEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred             ceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence            678999999987775 5599999999 33333   2222    223456899999994   23333 33311        


Q ss_pred             CeEEEEECCCC-------CeeEEEEec---CCCCeEEEEEecCCCcEEEEEeCC
Q 004603          619 RTVRVWDTENP-------DYSLRTFTG---HSTTVMSLDFHPSKEDLLCSCDNN  662 (743)
Q Consensus       619 g~VrvWDl~~~-------~~~l~~l~~---h~~~V~sl~fsp~g~~lL~Sgs~D  662 (743)
                      ..|.-|.+...       +..+..+..   .......|.|.|+|. |+++.+..
T Consensus        82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~-LYvs~G~~  134 (331)
T PF07995_consen   82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGK-LYVSVGDG  134 (331)
T ss_dssp             EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSE-EEEEEB-T
T ss_pred             eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCc-EEEEeCCC
Confidence            23433433332       111122222   223456799999984 55555433

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=82.97  E-value=72  Score=34.26  Aligned_cols=175  Identities=10%  Similarity=0.016  Sum_probs=101.7

Q ss_pred             CEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004603          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES  586 (743)
Q Consensus       507 ~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t  586 (743)
                      .++....++.-+++++..+..                ..+++..+... +.-+++..  .|++...+..|.-..+.|+.+
T Consensus        97 ~yvyvad~ssGL~IvDIS~P~----------------sP~~~~~lnt~-gyaygv~v--sGn~aYVadlddgfLivdvsd  157 (370)
T COG5276          97 EYVYVADWSSGLRIVDISTPD----------------SPTLIGFLNTD-GYAYGVYV--SGNYAYVADLDDGFLIVDVSD  157 (370)
T ss_pred             cEEEEEcCCCceEEEeccCCC----------------CcceeccccCC-ceEEEEEe--cCCEEEEeeccCcEEEEECCC
Confidence            455555567777777655442                22233323221 33455555  588888888666677888865


Q ss_pred             C---eEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCC-CeEEEEEecCCCcEEEEEeCC
Q 004603          587 F---TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHST-TVMSLDFHPSKEDLLCSCDNN  662 (743)
Q Consensus       587 ~---~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~h~~-~V~sl~fsp~g~~lL~Sgs~D  662 (743)
                      .   .....+.........++.+  |++-+.+..|+-+.+-|+.++..++..-.-..+ .+.++..+++  +.+++.. |
T Consensus       158 pssP~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdn--r~y~vvy-~  232 (370)
T COG5276         158 PSSPQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDN--RAYLVVY-D  232 (370)
T ss_pred             CCCceeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCC--eeEEEEc-c
Confidence            3   3344455555555677775  678888889999999999887765433222223 6777777765  3333333 4


Q ss_pred             CcEEEEECCCCeeeEEEec---cCce---eeecCCCEEEEEecCCeEEE
Q 004603          663 SEIRYWSINNGSCAGVFKV---CNLM---PIILKGCFILNSIFNCYLLL  705 (743)
Q Consensus       663 g~IrvWDl~tg~~v~~~~~---~~~i---~~s~~g~~l~sgs~Dg~I~v  705 (743)
                      ..|.+-|..+.+....+..   .+..   .+...+.+......+.-+.+
T Consensus       233 egvlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~  281 (370)
T COG5276         233 EGVLIVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPI  281 (370)
T ss_pred             cceEEEecCCCCCceEeeccccCCcccccceecccceeeeeccccCcee
Confidence            4578888877664444332   1111   23455665555544443333

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=82.83  E-value=6.1  Score=46.29  Aligned_cols=74  Identities=19%  Similarity=0.330  Sum_probs=44.0

Q ss_pred             CCCCEEEEEeCCCeEEEEECCC----CCeeEEE-Eec--------------------CCCCeEEEEEec---CCCcEEEE
Q 004603          607 PSLSRLATSSADRTVRVWDTEN----PDYSLRT-FTG--------------------HSTTVMSLDFHP---SKEDLLCS  658 (743)
Q Consensus       607 p~~~~LaSgs~Dg~VrvWDl~~----~~~~l~~-l~~--------------------h~~~V~sl~fsp---~g~~lL~S  658 (743)
                      ++...|+.+..||.+...+...    +...... +..                    ..+.+.+++++.   ++..++++
T Consensus       156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t  235 (547)
T PF11715_consen  156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT  235 (547)
T ss_dssp             -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred             cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence            3566777788888888777653    1111111 110                    123455666665   24567889


Q ss_pred             EeCCCcEEEEECCCCeeeEEEe
Q 004603          659 CDNNSEIRYWSINNGSCAGVFK  680 (743)
Q Consensus       659 gs~Dg~IrvWDl~tg~~v~~~~  680 (743)
                      .+.|++||+||+.+++|+.+..
T Consensus       236 l~~D~~LRiW~l~t~~~~~~~~  257 (547)
T PF11715_consen  236 LSRDHTLRIWSLETGQCLATID  257 (547)
T ss_dssp             EETTSEEEEEETTTTCEEEEEE
T ss_pred             EeCCCeEEEEECCCCeEEEEec
Confidence            9999999999999999977654

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=82.78  E-value=5.7  Score=39.14  Aligned_cols=32  Identities=22%  Similarity=0.335  Sum_probs=26.8

Q ss_pred             CCeEEEEEecC-----CCcEEEEEeCCCcEEEEECCC
Q 004603          641 TTVMSLDFHPS-----KEDLLCSCDNNSEIRYWSINN  672 (743)
Q Consensus       641 ~~V~sl~fsp~-----g~~lL~Sgs~Dg~IrvWDl~t  672 (743)
                      ..|.+++|+|.     ++.+|++...++.|.||....
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            47899999994     456899999999999998763

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=82.62  E-value=27  Score=38.86  Aligned_cols=88  Identities=14%  Similarity=0.030  Sum_probs=46.0

Q ss_pred             EEEcCCCCEE-EEEeCCCc--EEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEe
Q 004603          561 CHFSPDGKLL-ATGGHDKK--AVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT  637 (743)
Q Consensus       561 iafspdg~~L-aSgs~Dg~--V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~  637 (743)
                      =+|.+||+.| +++..|+.  +.+.|+.+++....-.+-........++|+.+.++-...+..|+-.|+++.+. ...+.
T Consensus        41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~-~~vy~  119 (386)
T PF14583_consen   41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEE-RVVYE  119 (386)
T ss_dssp             --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--E-EEEEE
T ss_pred             CCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcE-EEEEE
Confidence            3567788654 44444654  55668888776655443222233455678878876665667899999998765 34455


Q ss_pred             cCCCCeEEEEEe
Q 004603          638 GHSTTVMSLDFH  649 (743)
Q Consensus       638 ~h~~~V~sl~fs  649 (743)
                      -....+-...|.
T Consensus       120 ~p~~~~g~gt~v  131 (386)
T PF14583_consen  120 VPDDWKGYGTWV  131 (386)
T ss_dssp             --TTEEEEEEEE
T ss_pred             CCccccccccee
Confidence            455666555664

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=82.43  E-value=77  Score=34.24  Aligned_cols=114  Identities=14%  Similarity=0.139  Sum_probs=72.8

Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECC------CC-eEEEEEcc-----cCCCEEEEEEcCCCC------------EEE
Q 004603          558 VESCHFSPDGKLLATGGHDKKAVLWCTE------SF-TVKSTLEE-----HTQWITDVRFSPSLS------------RLA  613 (743)
Q Consensus       558 V~siafspdg~~LaSgs~Dg~V~IWd~~------t~-~~i~~l~~-----H~~~V~~vafsp~~~------------~La  613 (743)
                      -+.|+|+|.+.+-++...-++..+||..      .. ..+.++..     .....+.+.|+....            .++
T Consensus        25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi  104 (336)
T TIGR03118        25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL  104 (336)
T ss_pred             cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence            4579999999888888888899999986      12 22333331     134577777775322            367


Q ss_pred             EEeCCCeEEEEECCCCCe----eEEEEe-cCCCCe-EEEEEecC--CCcEEEEEeCCCcEEEEECC
Q 004603          614 TSSADRTVRVWDTENPDY----SLRTFT-GHSTTV-MSLDFHPS--KEDLLCSCDNNSEIRYWSIN  671 (743)
Q Consensus       614 Sgs~Dg~VrvWDl~~~~~----~l~~l~-~h~~~V-~sl~fsp~--g~~lL~Sgs~Dg~IrvWDl~  671 (743)
                      .+++||+|.-|...-...    .+..+. +....| ..+++...  +..|+++--..++|.|||-.
T Consensus       105 f~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~  170 (336)
T TIGR03118       105 FVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGS  170 (336)
T ss_pred             EEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCc
Confidence            888999999998532221    122222 112333 45666543  55677676778999999865

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=82.35  E-value=7.4  Score=40.03  Aligned_cols=65  Identities=11%  Similarity=0.079  Sum_probs=46.6

Q ss_pred             EcCCCCEEEEEeCCCcEEEEECCCCeEEEEE-------c-------ccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004603          563 FSPDGKLLATGGHDKKAVLWCTESFTVKSTL-------E-------EHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN  628 (743)
Q Consensus       563 fspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l-------~-------~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~  628 (743)
                      +..++.+|++-..+|.+++||+.+.+.+..-       .       .....|..+.++.+|.-|++-+ +|..+.||..-
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L   96 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL   96 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence            3447888999999999999999987654321       1       2446677788887777666654 56778887654

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=82.27  E-value=12  Score=44.26  Aligned_cols=71  Identities=18%  Similarity=0.305  Sum_probs=50.7

Q ss_pred             CCCCCeEEEEEc--CCCCEEEEEeCCCcEEEEECC---------CCeEEEEE--cccC-CCEEEEEEcCCCCEEEEEeCC
Q 004603          553 ASTSKVESCHFS--PDGKLLATGGHDKKAVLWCTE---------SFTVKSTL--EEHT-QWITDVRFSPSLSRLATSSAD  618 (743)
Q Consensus       553 ~H~~~V~siafs--pdg~~LaSgs~Dg~V~IWd~~---------t~~~i~~l--~~H~-~~V~~vafsp~~~~LaSgs~D  618 (743)
                      ...+.|.++.|.  |++..+++-|..+.|.+|.--         +..+++.+  ..|+ .+|.+..|.++|.+++.+  +
T Consensus        70 ~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--G  147 (631)
T PF12234_consen   70 SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--G  147 (631)
T ss_pred             cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEe--C
Confidence            456789999996  488999999999999999531         12233332  3454 579999999998766654  4


Q ss_pred             CeEEEEE
Q 004603          619 RTVRVWD  625 (743)
Q Consensus       619 g~VrvWD  625 (743)
                      ..+.|+|
T Consensus       148 Nqlfv~d  154 (631)
T PF12234_consen  148 NQLFVFD  154 (631)
T ss_pred             CEEEEEC
Confidence            5677776

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=82.19  E-value=39  Score=39.36  Aligned_cols=154  Identities=16%  Similarity=0.161  Sum_probs=84.1

Q ss_pred             CCeEEEEEcCCCCEE-EEEe--CCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCC----CCEEEEEeCCCeEEEEECCC
Q 004603          556 SKVESCHFSPDGKLL-ATGG--HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS----LSRLATSSADRTVRVWDTEN  628 (743)
Q Consensus       556 ~~V~siafspdg~~L-aSgs--~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~----~~~LaSgs~Dg~VrvWDl~~  628 (743)
                      .+|..++|. ||+.+ .|.-  ..|.+++=|.   +.+..|    ..|..+.|.|-    ...+...-..+.|.||-+..
T Consensus        20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGds---~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~   91 (671)
T PF15390_consen   20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGDS---KVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP   91 (671)
T ss_pred             ccccceEec-CCCEEEEEeeeeeCCccccCCc---cEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence            368889997 66644 3432  3444544332   233333    34889999984    33566666789999998752


Q ss_pred             -----CCeeEEEEecCC-C----CeEEEEEecCCCcEEEEEeCCCcEEEEECCCCe--eeEEEecc---CceeeecCCCE
Q 004603          629 -----PDYSLRTFTGHS-T----TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS--CAGVFKVC---NLMPIILKGCF  693 (743)
Q Consensus       629 -----~~~~l~~l~~h~-~----~V~sl~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~--~v~~~~~~---~~i~~s~~g~~  693 (743)
                           .+. +.....+- .    -...+.|||....+.+-...| .-.+++++...  ....++..   .+.+|..||..
T Consensus        92 s~~e~~K~-l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~d-vSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~R  169 (671)
T PF15390_consen   92 STTERNKL-LMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARD-VSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQR  169 (671)
T ss_pred             Cccccccc-eeeeeeeccCCcccCCCcccccCCCceEEEEecCc-eeEeeeeeeCCceEEEeccCCceEEEEEecCcCCE
Confidence                 111 22211111 1    124678999876433333333 22345555332  22233322   44678899998


Q ss_pred             EEEEecC-CeEEEEecccceEEEEecC
Q 004603          694 ILNSIFN-CYLLLHRIFLNLLSVSEWC  719 (743)
Q Consensus       694 l~sgs~D-g~I~vh~~~v~~l~v~~~~  719 (743)
                      |+++-.. =.-.+|+..-+.+.-+..|
T Consensus       170 LVVAvGSsLHSyiWd~~qKtL~~Csfc  196 (671)
T PF15390_consen  170 LVVAVGSSLHSYIWDSAQKTLHRCSFC  196 (671)
T ss_pred             EEEEeCCeEEEEEecCchhhhhhCCcc
Confidence            7776443 2345687766554444433

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=82.10  E-value=37  Score=41.22  Aligned_cols=75  Identities=17%  Similarity=0.254  Sum_probs=48.8

Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCeEEEEECCC---------CC--eeEEEE--------ecCCCCeEEEEEecCC---CcE
Q 004603          598 QWITDVRFSPSLSRLATSSADRTVRVWDTEN---------PD--YSLRTF--------TGHSTTVMSLDFHPSK---EDL  655 (743)
Q Consensus       598 ~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~---------~~--~~l~~l--------~~h~~~V~sl~fsp~g---~~l  655 (743)
                      -.|..|.++|+|.+|+..|..+.+-+.=.+.         ++  ...+++        ..+...|..+.|||.+   .++
T Consensus        85 f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l  164 (717)
T PF10168_consen   85 FEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL  164 (717)
T ss_pred             eeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence            4688899999999998888766543332221         11  111121        1334578899999974   455


Q ss_pred             EEEEeCCCcEEEEECCCC
Q 004603          656 LCSCDNNSEIRYWSINNG  673 (743)
Q Consensus       656 L~Sgs~Dg~IrvWDl~tg  673 (743)
                      + .=..|++||+||+...
T Consensus       165 ~-vLtsdn~lR~y~~~~~  181 (717)
T PF10168_consen  165 V-VLTSDNTLRLYDISDP  181 (717)
T ss_pred             E-EEecCCEEEEEecCCC
Confidence            5 4445999999999753

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=82.03  E-value=18  Score=37.39  Aligned_cols=54  Identities=15%  Similarity=0.065  Sum_probs=43.2

Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcC-CCCEEEE
Q 004603          561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP-SLSRLAT  614 (743)
Q Consensus       561 iafspdg~~LaSgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp-~~~~LaS  614 (743)
                      ++...+|++.+++-..++|...|..+++.+..+.-.+..|+|++|-- +-..+++
T Consensus       217 m~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGkn~d~~yv  271 (310)
T KOG4499|consen  217 MTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGKNLDILYV  271 (310)
T ss_pred             ceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCCCccEEEE
Confidence            33455888888888889999999999999999998899999999953 3344433

>PRK10115 protease 2; Provisional

Probab=81.80  E-value=65  Score=39.05  Aligned_cols=99  Identities=7%  Similarity=0.045  Sum_probs=60.6

Q ss_pred             CCEEEEEEcCCCCEEEEEeC-CC----eEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCcEEEEEeCC-----CcEEE
Q 004603          598 QWITDVRFSPSLSRLATSSA-DR----TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-----SEIRY  667 (743)
Q Consensus       598 ~~V~~vafsp~~~~LaSgs~-Dg----~VrvWDl~~~~~~l~~l~~h~~~V~sl~fsp~g~~lL~Sgs~D-----g~Irv  667 (743)
                      -.+..+.|+|++++|+.+.. +|    .|++.|+.++......+.+ .  -..++|.+++..++++...+     ..|++
T Consensus       127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~-~--~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~  203 (686)
T PRK10115        127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDN-V--EPSFVWANDSWTFYYVRKHPVTLLPYQVWR  203 (686)
T ss_pred             EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccC-c--ceEEEEeeCCCEEEEEEecCCCCCCCEEEE
Confidence            34667889999998866543 23    5888899876532222322 1  25699999988777765533     36888


Q ss_pred             EECCCC--eeeEEEeccCc-----eeeecCCCEEEEEec
Q 004603          668 WSINNG--SCAGVFKVCNL-----MPIILKGCFILNSIF  699 (743)
Q Consensus       668 WDl~tg--~~v~~~~~~~~-----i~~s~~g~~l~sgs~  699 (743)
                      +++.++  +-...+.....     ...+.++.+++..+.
T Consensus       204 h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~  242 (686)
T PRK10115        204 HTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLA  242 (686)
T ss_pred             EECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEE
Confidence            898887  33334442111     122347777665543

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=81.38  E-value=28  Score=36.10  Aligned_cols=102  Identities=11%  Similarity=0.029  Sum_probs=65.8

Q ss_pred             EEEEEcCCCCEE-EEEeCCCcEEEEE--CCCCe-----EEEEEcc----cCCCEEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 004603          559 ESCHFSPDGKLL-ATGGHDKKAVLWC--TESFT-----VKSTLEE----HTQWITDVRFSPSLSRLATSSADRTVRVWDT  626 (743)
Q Consensus       559 ~siafspdg~~L-aSgs~Dg~V~IWd--~~t~~-----~i~~l~~----H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl  626 (743)
                      +.++|+.+.+.+ ++-+.+.+|.-||  +.++.     .+..++.    ..-.--.+++..+|.+++++-..++|...|.
T Consensus       161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp  240 (310)
T KOG4499|consen  161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDP  240 (310)
T ss_pred             ccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECC
Confidence            467888766644 5556778888888  44432     2222221    0011122344667888888888999999999


Q ss_pred             CCCCeeEEEEecCCCCeEEEEEecCC-CcEEEEEeC
Q 004603          627 ENPDYSLRTFTGHSTTVMSLDFHPSK-EDLLCSCDN  661 (743)
Q Consensus       627 ~~~~~~l~~l~~h~~~V~sl~fsp~g-~~lL~Sgs~  661 (743)
                      .+++. +.+++-....|+|+||--.. ..+++++..
T Consensus       241 ~tGK~-L~eiklPt~qitsccFgGkn~d~~yvT~aa  275 (310)
T KOG4499|consen  241 TTGKI-LLEIKLPTPQITSCCFGGKNLDILYVTTAA  275 (310)
T ss_pred             CCCcE-EEEEEcCCCceEEEEecCCCccEEEEEehh
Confidence            99886 77777778899999996432 224445443

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=81.27  E-value=78  Score=33.52  Aligned_cols=104  Identities=12%  Similarity=0.098  Sum_probs=67.8

Q ss_pred             EEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEec--C---CCCeEEE
Q 004603          572 TGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG--H---STTVMSL  646 (743)
Q Consensus       572 Sgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~~LaSgs~Dg~VrvWDl~~~~~~l~~l~~--h---~~~V~sl  646 (743)
                      -.=.++++.+||..+.+.+.++.-. +.=+.++  .++..|+.+.....|+++|..+... ++.+.-  .   -..++-|
T Consensus       105 LTWk~~~~f~yd~~tl~~~~~~~y~-~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~-~~~i~V~~~g~pv~~LNEL  180 (264)
T PF05096_consen  105 LTWKEGTGFVYDPNTLKKIGTFPYP-GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKE-VRTIQVTDNGRPVSNLNEL  180 (264)
T ss_dssp             EESSSSEEEEEETTTTEEEEEEE-S-SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SE-EEEEE-EETTEE---EEEE
T ss_pred             EEecCCeEEEEccccceEEEEEecC-CcceEEE--cCCCEEEEECCccceEEECCcccce-EEEEEEEECCEECCCcEeE
Confidence            3345788999999999998888543 3445665  3567788877788999999887654 333321  1   2356778


Q ss_pred             EEecCCCcEEEEEeCCCcEEEEECCCCeeeEEEec
Q 004603          647 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKV  681 (743)
Q Consensus       647 ~fsp~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~  681 (743)
                      .|. +| .++|=.-....|...|..+|+++..+..
T Consensus       181 E~i-~G-~IyANVW~td~I~~Idp~tG~V~~~iDl  213 (264)
T PF05096_consen  181 EYI-NG-KIYANVWQTDRIVRIDPETGKVVGWIDL  213 (264)
T ss_dssp             EEE-TT-EEEEEETTSSEEEEEETTT-BEEEEEE-
T ss_pred             EEE-cC-EEEEEeCCCCeEEEEeCCCCeEEEEEEh
Confidence            887 33 4776666677899999999999988763

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=80.91  E-value=8.9  Score=47.38  Aligned_cols=107  Identities=11%  Similarity=-0.057  Sum_probs=68.5

Q ss_pred             EEEEEEcCCCCEE--EEEeCCCeEEEEECCCCCeeE----EEEe------cCCCCeEEEEEecCCCcEEEEEeCCCcEEE
Q 004603          600 ITDVRFSPSLSRL--ATSSADRTVRVWDTENPDYSL----RTFT------GHSTTVMSLDFHPSKEDLLCSCDNNSEIRY  667 (743)
Q Consensus       600 V~~vafsp~~~~L--aSgs~Dg~VrvWDl~~~~~~l----~~l~------~h~~~V~sl~fsp~g~~lL~Sgs~Dg~Irv  667 (743)
                      |..+...+|+...  +..+.+-.|.+||+++.....    .-+.      .....+.++.|+|.-....+.+..|+.|+|
T Consensus       103 i~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V  182 (1405)
T KOG3630|consen  103 IVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRV  182 (1405)
T ss_pred             ceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhh
Confidence            4444445565543  333345689999997643211    1111      122345678899986666778888999999


Q ss_pred             EECCCCe-eeEEEe---ccCceeeecCCCEEEEEecCCeEEEE
Q 004603          668 WSINNGS-CAGVFK---VCNLMPIILKGCFILNSIFNCYLLLH  706 (743)
Q Consensus       668 WDl~tg~-~v~~~~---~~~~i~~s~~g~~l~sgs~Dg~I~vh  706 (743)
                      ..+..-. .+..+.   ..++++|++.|.-++.|...|++.-+
T Consensus       183 ~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy  225 (1405)
T KOG3630|consen  183 KSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQY  225 (1405)
T ss_pred             hhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEe
Confidence            8776432 222222   34678999999999999999987763

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=80.74  E-value=53  Score=37.63  Aligned_cols=132  Identities=14%  Similarity=0.180  Sum_probs=78.3

Q ss_pred             CCCEEE-EEeCCCcEEEEECCCCeEEEEEcccCCCEEEEEEcCCCC-------EEEEEeCCCeEEEEECCCCCeeEEEEe
Q 004603          566 DGKLLA-TGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS-------RLATSSADRTVRVWDTENPDYSLRTFT  637 (743)
Q Consensus       566 dg~~La-Sgs~Dg~V~IWd~~t~~~i~~l~~H~~~V~~vafsp~~~-------~LaSgs~Dg~VrvWDl~~~~~~l~~l~  637 (743)
                      |..+|+ .|+...++.--|++.|+.+..+.-|...  -|.|.|..+       .-+.|-.|..|.-.|.|.....+....
T Consensus       478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~e  555 (776)
T COG5167         478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVE  555 (776)
T ss_pred             CcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeee
Confidence            444444 4556667888899999999999888764  567887422       234555677777677765442222211


Q ss_pred             cCCCCeEEEEEec---CCCcEEEEEeCCCcEEEEECCCCeeeEEEec----cCceeeecCCCEEEEEecC
Q 004603          638 GHSTTVMSLDFHP---SKEDLLCSCDNNSEIRYWSINNGSCAGVFKV----CNLMPIILKGCFILNSIFN  700 (743)
Q Consensus       638 ~h~~~V~sl~fsp---~g~~lL~Sgs~Dg~IrvWDl~tg~~v~~~~~----~~~i~~s~~g~~l~sgs~D  700 (743)
                       ....++--.|+.   ....+++.++..|-||+||.-.......+.+    ...+.++.+|.++++.+..
T Consensus       556 -sKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~  624 (776)
T COG5167         556 -SKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKN  624 (776)
T ss_pred             -ehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecc
Confidence             111222222222   1123678899999999999643322222222    2346677889888877755

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=80.55  E-value=41  Score=40.18  Aligned_cols=31  Identities=13%  Similarity=0.107  Sum_probs=23.7

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004603          555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTES  586 (743)
Q Consensus       555 ~~~V~siafspdg~~LaSgs~Dg~V~IWd~~t  586 (743)
                      .+.+..+.|+.+.. |++-..||+|+||++-.
T Consensus        83 ~~~lI~mgWs~~ee-LI~v~k~g~v~Vy~~~g  113 (829)
T KOG2280|consen   83 HGELIGMGWSDDEE-LICVQKDGTVHVYGLLG  113 (829)
T ss_pred             CCCeeeecccCCce-EEEEeccceEEEeecch
Confidence            34788999997665 55557899999999753

>PHA03098 kelch-like protein; Provisional

Probab=80.01  E-value=23  Score=41.20  Aligned_cols=105  Identities=8%  Similarity=0.054  Sum_probs=51.1

Q ss_pred             CCCEEEEEeCC------CcEEEEECCCCeEEEE--EcccCCCEEEEEEcCCCCEEEEEeCC--------CeEEEEECCCC
Q 004603          566 DGKLLATGGHD------KKAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLATSSAD--------RTVRVWDTENP  629 (743)
Q Consensus       566 dg~~LaSgs~D------g~V~IWd~~t~~~i~~--l~~H~~~V~~vafsp~~~~LaSgs~D--------g~VrvWDl~~~  629 (743)
                      ++++++.||.+      +.|.+||..+.+....  +........++..  ++..++.|+.+        ..+.+||+.+.
T Consensus       389 ~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~  466 (534)
T PHA03098        389 NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYH--DGKIYVIGGISYIDNIKVYNIVESYNPVTN  466 (534)
T ss_pred             CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEE--CCEEEEECCccCCCCCcccceEEEecCCCC
Confidence            66777777732      3578889876443221  1111111122222  45566666543        23888998875


Q ss_pred             CeeEEE-EecCCCCeEEEEEecCCCcEEEEEeCC-----CcEEEEECCCCee
Q 004603          630 DYSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNN-----SEIRYWSINNGSC  675 (743)
Q Consensus       630 ~~~l~~-l~~h~~~V~sl~fsp~g~~lL~Sgs~D-----g~IrvWDl~tg~~  675 (743)
                      ...... +.........+.+  + ..+++.|+.+     ..|.+||..+.+.
T Consensus       467 ~W~~~~~~~~~r~~~~~~~~--~-~~iyv~GG~~~~~~~~~v~~yd~~~~~W  515 (534)
T PHA03098        467 KWTELSSLNFPRINASLCIF--N-NKIYVVGGDKYEYYINEIEVYDDKTNTW  515 (534)
T ss_pred             ceeeCCCCCcccccceEEEE--C-CEEEEEcCCcCCcccceeEEEeCCCCEE
Confidence            531111 1111111112222  3 3466666644     3677788776643

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	743
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		1e-12
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		2e-08
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		1e-12
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		2e-08
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		1e-12
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		3e-08
2hes_X	330	Cytosolic Iron-sulphur Assembly Protein- 1 Length =		2e-12
2h9l_A	329	Wdr5delta23 Length = 329		1e-11
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		1e-11
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		1e-11
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		1e-11
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		2e-11
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		2e-11
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		2e-11
2g99_A	308	Structural Basis For The Specific Recognition Of Me		2e-11
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		2e-11
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		2e-11
2gnq_A	336	Structure Of Wdr5 Length = 336		2e-11
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		2e-11
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		2e-11
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		3e-11
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		6e-11
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		9e-11
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		1e-10
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		7e-10
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		1e-08
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		1e-08
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		1e-08
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		1e-08
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		8e-08
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		2e-07
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		5e-07
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		5e-07
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		5e-07
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		5e-07
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		6e-07
3cfs_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		6e-07
3cfv_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		2e-06
2yba_A	422	Crystal Structure Of Nurf55 In Complex With Histone		2e-06
3c99_A	432	Structural Basis Of Histone H4 Recognition By P55 L		2e-06
2xyi_A	430	Crystal Structure Of Nurf55 In Complex With A H4 Pe		2e-06
3gfc_A	425	Crystal Structure Of Histone-Binding Protein Rbbp4		3e-06
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		4e-06
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		9e-06
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		1e-05
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		2e-05
4ggd_A	431	Structural Analysis Of Human Cdc20 Supports Multisi		2e-05
4gga_A	420	Structural Analysis Of Human Cdc20 Supports Multi-S		2e-05
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		3e-05
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		7e-05
4ggc_A	318	Structural Analysis Of Human Cdc20 Supports Multi-S		3e-05
3jro_A	753	Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice		4e-05
3jro_A	753	Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice		5e-05
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		4e-05
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		4e-05
3jrp_A	379	Sec13 With Nup145c (Aa109-179) Insertion Blade Leng		5e-05
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		6e-05
2pm6_B	297	Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF		7e-05
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		1e-04
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		1e-04
2pm9_B	297	Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O		1e-04
2pm7_B	297	Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF		4e-04
2pm7_B	297	Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF		5e-04
1nr0_A	611	Two Seven-Bladed Beta-Propeller Domains Revealed By		7e-04

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 72.0 bits (175), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 73/144 (50%), Gaps = 3/144 (2%)
Query: 532 RVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS 591
           ++GR +E  K     +F L    T  V S  FSP+G+ LA+   DK   +W       + 
Sbjct: 4   QMGRGSEFVKPNYALKFTL-AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK 62
Query: 592 TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS 651
           T+  H   I+DV +S   + L ++S D+T+++WD  +    L+T  GHS  V   +F+P 
Sbjct: 63  TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP- 120
Query: 652 KEDLLCSCDNNSEIRYWSINNGSC 675
           + +L+ S   +  +R W +  G C
Sbjct: 121 QSNLIVSGSFDESVRIWDVKTGKC 144

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 63/118 (53%), Gaps = 12/118 (10%)
Query: 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS 645
           ++ +K TL  HT+ ++ V+FSP+   LA+SSAD+ +++W   +  +  +T +GH   +  
Sbjct: 15  NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISD 73
Query: 646 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-------VCNLMP---IILKGCF 693
           + +  S  +LL S  ++  ++ W +++G C    K        CN  P   +I+ G F
Sbjct: 74  VAW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 130

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 72.0 bits (175), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 73/144 (50%), Gaps = 3/144 (2%)
Query: 532 RVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS 591
           ++GR +E  K     +F L    T  V S  FSP+G+ LA+   DK   +W       + 
Sbjct: 4   QMGRGSEFVKPNYALKFTL-AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK 62
Query: 592 TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS 651
           T+  H   I+DV +S   + L ++S D+T+++WD  +    L+T  GHS  V   +F+P 
Sbjct: 63  TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP- 120
Query: 652 KEDLLCSCDNNSEIRYWSINNGSC 675
           + +L+ S   +  +R W +  G C
Sbjct: 121 QSNLIVSGSFDESVRIWDVKTGKC 144

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 63/118 (53%), Gaps = 12/118 (10%)
Query: 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS 645
           ++ +K TL  HT+ ++ V+FSP+   LA+SSAD+ +++W   +  +  +T +GH   +  
Sbjct: 15  NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISD 73
Query: 646 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-------VCNLMP---IILKGCF 693
           + +  S  +LL S  ++  ++ W +++G C    K        CN  P   +I+ G F
Sbjct: 74  VAW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 130

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 72/144 (50%), Gaps = 3/144 (2%)
Query: 532 RVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS 591
           ++GR +E  K     +F L    T  V S  FSP+G+ LA    DK   +W       + 
Sbjct: 4   QMGRGSEFVKPNYALKFTL-AGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEK 62
Query: 592 TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS 651
           T+  H   I+DV +S   + L ++S D+T+++WD  +    L+T  GHS  V   +F+P 
Sbjct: 63  TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP- 120
Query: 652 KEDLLCSCDNNSEIRYWSINNGSC 675
           + +L+ S   +  +R W +  G C
Sbjct: 121 QSNLIVSGSFDESVRIWDVKTGKC 144

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 62/118 (52%), Gaps = 12/118 (10%)
Query: 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS 645
           ++ +K TL  HT+ ++ V+FSP+   LA SSAD+ +++W   +  +  +T +GH   +  
Sbjct: 15  NYALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFE-KTISGHKLGISD 73
Query: 646 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-------VCNLMP---IILKGCF 693
           + +  S  +LL S  ++  ++ W +++G C    K        CN  P   +I+ G F
Sbjct: 74  VAW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 130

>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 76/163 (46%), Gaps = 18/163 (11%)
Query: 512 GSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLA 571
           GS D  V  +   + AD            + F      +I    ++V+   +S DG  LA
Sbjct: 76  GSFDSTVSIWAKEESAD------------RTFEMDLLAIIEGHENEVKGVAWSNDGYYLA 123
Query: 572 TGGHDKKAVLWCT----ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 627
           T   DK   +W T    E +   S L+EH+Q +  V + PS + LA+SS D TVR+W   
Sbjct: 124 TCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDY 183
Query: 628 NPDYS-LRTFTGHSTTVMSLDFHPSKEDL-LCSCDNNSEIRYW 668
           + D+  +    GH  TV S DF  ++    LCS  ++S +R W
Sbjct: 184 DDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVW 226

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/132 (21%), Positives = 61/132 (46%), Gaps = 1/132 (0%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP 607
            + +   ++ V  C+F+P   L+ +G  D+   +W  ++     TL  H+  ++ V F+ 
Sbjct: 117 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 176
Query: 608 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY 667
             S + +SS D   R+WDT +           +  V  + F P+ + +L +  +N+ ++ 
Sbjct: 177 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT-LKL 235
Query: 668 WSINNGSCAGVF 679
           W  + G C   +
Sbjct: 236 WDYSKGKCLKTY 247

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/132 (21%), Positives = 61/132 (46%), Gaps = 1/132 (0%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP 607
            + +   ++ V  C+F+P   L+ +G  D+   +W  ++     TL  H+  ++ V F+ 
Sbjct: 105 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 164
Query: 608 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY 667
             S + +SS D   R+WDT +           +  V  + F P+ + +L +  +N+ ++ 
Sbjct: 165 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT-LKL 223
Query: 668 WSINNGSCAGVF 679
           W  + G C   +
Sbjct: 224 WDYSKGKCLKTY 235

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 64/125 (51%), Gaps = 2/125 (1%)
Query: 551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS 610
           +   T  V S  FSP+G+ LA+   DK   +W       + T+  H   I+DV +S   +
Sbjct: 25  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 84
Query: 611 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI 670
            L ++S D+T+++WD  +    L+T  GHS  V   +F+P + +L+ S   +  +R W +
Sbjct: 85  LLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDV 142
Query: 671 NNGSC 675
             G C
Sbjct: 143 KTGKC 147

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/132 (21%), Positives = 61/132 (46%), Gaps = 1/132 (0%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP 607
            + +   ++ V  C+F+P   L+ +G  D+   +W  ++     TL  H+  ++ V F+ 
Sbjct: 99  LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 158
Query: 608 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY 667
             S + +SS D   R+WDT +           +  V  + F P+ + +L +  +N+ ++ 
Sbjct: 159 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT-LKL 217
Query: 668 WSINNGSCAGVF 679
           W  + G C   +
Sbjct: 218 WDYSKGKCLKTY 229

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 68.2 bits (165), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 63/121 (52%), Gaps = 2/121 (1%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
           T  V S  FSP+G+ LA+   DK   +W       + T+  H   I+DV +S   + L +
Sbjct: 29  TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 88
Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
           +S D+T+++WD  +    L+T  GHS  V   +F+P + +L+ S   +  +R W +  G 
Sbjct: 89  ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 146
Query: 675 C 675
           C
Sbjct: 147 C 147

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 68.2 bits (165), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 63/121 (52%), Gaps = 2/121 (1%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
           T  V S  FSP+G+ LA+   DK   +W       + T+  H   I+DV +S   + L +
Sbjct: 29  TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 88
Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
           +S D+T+++WD  +    L+T  GHS  V   +F+P + +L+ S   +  +R W +  G 
Sbjct: 89  ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 146
Query: 675 C 675
           C
Sbjct: 147 C 147

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/132 (21%), Positives = 61/132 (46%), Gaps = 1/132 (0%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP 607
            + +   ++ V  C+F+P   L+ +G  D+   +W  ++     TL  H+  ++ V F+ 
Sbjct: 100 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 159
Query: 608 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY 667
             S + +SS D   R+WDT +           +  V  + F P+ + +L +  +N+ ++ 
Sbjct: 160 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT-LKL 218
Query: 668 WSINNGSCAGVF 679
           W  + G C   +
Sbjct: 219 WDYSKGKCLKTY 230

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/132 (21%), Positives = 61/132 (46%), Gaps = 1/132 (0%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP 607
            + +   ++ V  C+F+P   L+ +G  D+   +W  ++     TL  H+  ++ V F+ 
Sbjct: 96  LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 155
Query: 608 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY 667
             S + +SS D   R+WDT +           +  V  + F P+ + +L +  +N+ ++ 
Sbjct: 156 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT-LKL 214
Query: 668 WSINNGSCAGVF 679
           W  + G C   +
Sbjct: 215 WDYSKGKCLKTY 226

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 68.2 bits (165), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 64/125 (51%), Gaps = 2/125 (1%)
Query: 551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS 610
           +   T  V S  FSP+G+ LA+   DK   +W       + T+  H   I+DV +S   +
Sbjct: 19  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 78
Query: 611 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI 670
            L ++S D+T+++WD  +    L+T  GHS  V   +F+P + +L+ S   +  +R W +
Sbjct: 79  LLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDV 136
Query: 671 NNGSC 675
             G C
Sbjct: 137 KTGKC 141

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/132 (21%), Positives = 61/132 (46%), Gaps = 1/132 (0%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP 607
            + +   ++ V  C+F+P   L+ +G  D+   +W  ++     TL  H+  ++ V F+ 
Sbjct: 101 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 160
Query: 608 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY 667
             S + +SS D   R+WDT +           +  V  + F P+ + +L +  +N+ ++ 
Sbjct: 161 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT-LKL 219
Query: 668 WSINNGSCAGVF 679
           W  + G C   +
Sbjct: 220 WDYSKGKCLKTY 231

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 63/121 (52%), Gaps = 2/121 (1%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
           T  V S  FSP+G+ LA+   DK   +W       + T+  H   I+DV +S   + L +
Sbjct: 47  TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 106
Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
           +S D+T+++WD  +    L+T  GHS  V   +F+P + +L+ S   +  +R W +  G 
Sbjct: 107 ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 164
Query: 675 C 675
           C
Sbjct: 165 C 165

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 63/121 (52%), Gaps = 2/121 (1%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
           T  V S  FSP+G+ LA+   DK   +W       + T+  H   I+DV +S   + L +
Sbjct: 45  TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 104
Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
           +S D+T+++WD  +    L+T  GHS  V   +F+P + +L+ S   +  +R W +  G 
Sbjct: 105 ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 162
Query: 675 C 675
           C
Sbjct: 163 C 163

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 63/121 (52%), Gaps = 2/121 (1%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
           T  V S  FSP+G+ LA+   DK   +W       + T+  H   I+DV +S   + L +
Sbjct: 26  TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 85
Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
           +S D+T+++WD  +    L+T  GHS  V   +F+P + +L+ S   +  +R W +  G 
Sbjct: 86  ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGM 143
Query: 675 C 675
           C
Sbjct: 144 C 144

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 67.4 bits (163), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 63/121 (52%), Gaps = 2/121 (1%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
           T  V S  FSP+G+ LA+   DK   +W       + T+  H   I+DV +S   + L +
Sbjct: 26  TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 85
Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
           +S D+T+++WD  +    L+T  GHS  V   +F+P + +L+ S   +  +R W +  G 
Sbjct: 86  ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGM 143
Query: 675 C 675
           C
Sbjct: 144 C 144

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 66.2 bits (160), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 67/125 (53%), Gaps = 4/125 (3%)
Query: 547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS 606
           E   + A +S V    FSPDG+ +A+   DK   LW      ++ TL  H+  +  V FS
Sbjct: 8   ERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ-TLTGHSSSVWGVAFS 66
Query: 607 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 666
           P    +A++S D+TV++W+       L+T TGHS++V  + F P  + +  + D+ + ++
Sbjct: 67  PDGQTIASASDDKTVKLWNRNG--QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKT-VK 123
Query: 667 YWSIN 671
            W+ N
Sbjct: 124 LWNRN 128

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 65.5 bits (158), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 42/117 (35%), Positives = 63/117 (53%), Gaps = 5/117 (4%)
Query: 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTES---FTVKSTLEEHTQWITDVRFSPSLSRL 612
           ++V+S  ++P G LLAT   DK   +W  +    +   S L  HTQ +  V + PS   L
Sbjct: 106 NEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELL 165
Query: 613 ATSSADRTVRVWDTENPDY-SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW 668
           A++S D TV+++  E  D+    T  GH +TV SL F PS + L  SC ++  +R W
Sbjct: 166 ASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLA-SCSDDRTVRIW 221

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 57/122 (46%), Gaps = 2/122 (1%)
Query: 552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSR 611
           P+S   + S  FSPDGK LATG  D+   +W  E+  +   L+ H Q I  + + PS  +
Sbjct: 120 PSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDK 179
Query: 612 LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 671
           L + S DRTVR+WD      SL        T +++   P     + +   +  +R W   
Sbjct: 180 LVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAV--SPGDGKYIAAGSLDRAVRVWDSE 237
Query: 672 NG 673
            G
Sbjct: 238 TG 239

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 62.8 bits (151), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 63/131 (48%), Gaps = 4/131 (3%)
Query: 551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS 610
           +   T  V+   F   GKLLA+   D    LW  + F    T+  H   ++ V   P+  
Sbjct: 146 LKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGD 205
Query: 611 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE-DLLCSCDNNSEIRYWS 669
            + ++S D+T+++W+ +   Y ++TFTGH   V  +   P+++  L+ SC N+  +R W 
Sbjct: 206 HIVSASRDKTIKMWEVQT-GYCVKTFTGHREWVRMV--RPNQDGTLIASCSNDQTVRVWV 262
Query: 670 INNGSCAGVFK 680
           +    C    +
Sbjct: 263 VATKECKAELR 273

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 67/142 (47%), Gaps = 4/142 (2%)
Query: 535 RSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE 594
           ++ +V K  T  +   I A   +V  C FS D   +AT   DKK  +W + +  +  T +
Sbjct: 644 KTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYD 703
Query: 595 EHTQWITDVRFSPSLSR--LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK 652
           EH++ +    F+   +   LAT S D  +++WD  N      T  GH+ +V    F P  
Sbjct: 704 EHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDL-NQKECRNTMFGHTNSVNHCRFSPDD 762
Query: 653 EDLLCSCDNNSEIRYWSINNGS 674
           E LL SC  +  +R W + + +
Sbjct: 763 E-LLASCSADGTLRLWDVRSAN 783

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 80/173 (46%), Gaps = 17/173 (9%)
Query: 522 LSPDDADPRDRVGRSAEVGK-----GFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHD 576
           L  D    + R+  S++ GK      FT  +   +    + V +C ++P G  +A GG D
Sbjct: 68  LCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLD 127
Query: 577 KKAVLW-----CTESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD 630
            K  ++       E+   K  ++  HT +++   F+ S  ++ T+S D T  +WD E+  
Sbjct: 128 NKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQ 187
Query: 631 YSLRTFTGHSTTVMSLDFHPSKED---LLCSCDNNSEIRYWSINNGSCAGVFK 680
             L++F GH   V+ LD  PS+     +   CD  + +  W + +G C   F+
Sbjct: 188 L-LQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMV--WDMRSGQCVQAFE 237

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 67/142 (47%), Gaps = 4/142 (2%)
Query: 535 RSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE 594
           ++ +V K  T  +   I A   +V  C FS D   +AT   DKK  +W + +  +  T +
Sbjct: 637 KTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYD 696
Query: 595 EHTQWITDVRFSPSLSR--LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK 652
           EH++ +    F+   +   LAT S D  +++WD  N      T  GH+ +V    F P  
Sbjct: 697 EHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDL-NQKECRNTMFGHTNSVNHCRFSPDD 755
Query: 653 EDLLCSCDNNSEIRYWSINNGS 674
           E LL SC  +  +R W + + +
Sbjct: 756 E-LLASCSADGTLRLWDVRSAN 776

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 55.8 bits (133), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 59/117 (50%), Gaps = 2/117 (1%)
Query: 563 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 622
           FSPD + LATG H  K  ++  ES   + +L+   ++I  + +SP    LA+ + D  + 
Sbjct: 130 FSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIIN 189
Query: 623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF 679
           ++D       L T  GH+  + SL F P  + LL +  ++  I+ + + + + AG  
Sbjct: 190 IFDIATGKL-LHTLEGHAMPIRSLTFSPDSQ-LLVTASDDGYIKIYDVQHANLAGTL 244

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 57/110 (51%), Gaps = 6/110 (5%)
Query: 566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625
           DG+ + +G +D    +W  E+ T   TL+ HT  +  ++F      + + S D ++RVWD
Sbjct: 248 DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDG--IHVVSGSLDTSIRVWD 305
Query: 626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC 675
            E  +  + T TGH +    ++    K+++L S + +S ++ W I  G C
Sbjct: 306 VETGN-CIHTLTGHQSLTSGMEL---KDNILVSGNADSTVKIWDIKTGQC 351

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 53.5 bits (127), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 65/141 (46%), Gaps = 7/141 (4%)
Query: 543 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES----FTVKSTLEEHTQ 598
           +T  +   IP  +S V +C ++P G  +A GG D    ++  ++      V   L  HT 
Sbjct: 96  YTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTG 155
Query: 599 WITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS 658
           +++  RF    +++ TSS D T  +WD E       TFTGH+  VMSL   P    L  S
Sbjct: 156 YLSCCRFLDD-NQIVTSSGDTTCALWDIETG-QQTTTFTGHTGDVMSLSLAPDTR-LFVS 212
Query: 659 CDNNSEIRYWSINNGSCAGVF 679
              ++  + W +  G C   F
Sbjct: 213 GACDASAKLWDVREGMCRQTF 233

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 65/141 (46%), Gaps = 7/141 (4%)
Query: 543 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES----FTVKSTLEEHTQ 598
           +T  +   IP  +S V +C ++P G  +A GG D    ++  ++      V   L  HT 
Sbjct: 85  YTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTG 144
Query: 599 WITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS 658
           +++  RF    +++ TSS D T  +WD E       TFTGH+  VMSL   P    L  S
Sbjct: 145 YLSCCRFLDD-NQIVTSSGDTTCALWDIETG-QQTTTFTGHTGDVMSLSLAPDTR-LFVS 201
Query: 659 CDNNSEIRYWSINNGSCAGVF 679
              ++  + W +  G C   F
Sbjct: 202 GACDASAKLWDVREGMCRQTF 222

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 65/141 (46%), Gaps = 7/141 (4%)
Query: 543 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES----FTVKSTLEEHTQ 598
           +T  +   IP  +S V +C ++P G  +A GG D    ++  ++      V   L  HT 
Sbjct: 85  YTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTG 144
Query: 599 WITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS 658
           +++  RF    +++ TSS D T  +WD E       TFTGH+  VMSL   P    L  S
Sbjct: 145 YLSCCRFLDD-NQIVTSSGDTTCALWDIETG-QQTTTFTGHTGDVMSLSLAPDTR-LFVS 201
Query: 659 CDNNSEIRYWSINNGSCAGVF 679
              ++  + W +  G C   F
Sbjct: 202 GACDASAKLWDVREGMCRQTF 222

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 65/141 (46%), Gaps = 7/141 (4%)
Query: 543 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES----FTVKSTLEEHTQ 598
           +T  +   IP  +S V +C ++P G  +A GG D    ++  ++      V   L  HT 
Sbjct: 85  YTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTG 144
Query: 599 WITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS 658
           +++  RF    +++ TSS D T  +WD E       TFTGH+  VMSL   P    L  S
Sbjct: 145 YLSCCRFLDD-NQIVTSSGDTTCALWDIETG-QQTTTFTGHTGDVMSLSLAPDTR-LFVS 201
Query: 659 CDNNSEIRYWSINNGSCAGVF 679
              ++  + W +  G C   F
Sbjct: 202 GACDASAKLWDVREGMCRQTF 222

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 53.1 bits (126), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 65/141 (46%), Gaps = 7/141 (4%)
Query: 543 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES----FTVKSTLEEHTQ 598
           +T  +   IP  +S V +C ++P G  +A GG D    ++  ++      V   L  HT 
Sbjct: 85  YTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTG 144
Query: 599 WITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS 658
           +++  RF    +++ TSS D T  +WD E       TFTGH+  VMSL   P    L  S
Sbjct: 145 YLSCCRFLDD-NQIVTSSGDTTCALWDIETG-QQTTTFTGHTGDVMSLSLAPDTR-LFVS 201
Query: 659 CDNNSEIRYWSINNGSCAGVF 679
              ++  + W +  G C   F
Sbjct: 202 GACDASAKLWDVREGMCRQTF 222

>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 53.1 bits (126), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 65/138 (47%), Gaps = 16/138 (11%)
Query: 549 QLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVK-STLEEHTQWITDVRFS 606
            L+ A T++V    F+P  + +LATG  DK   LW   +  +K  T E H   I  V +S
Sbjct: 269 HLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWS 328
Query: 607 P-SLSRLATSSADRTVRVWD-------------TENPDYSLRTFTGHSTTVMSLDFHPSK 652
           P + + LA+S  DR + VWD              + P   L    GH+  +    ++P++
Sbjct: 329 PHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNE 388
Query: 653 EDLLCSCDNNSEIRYWSI 670
             ++CS   ++ ++ W +
Sbjct: 389 PWVICSVSEDNIMQIWQM 406

>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 63/136 (46%), Gaps = 16/136 (11%)
Query: 549 QLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVK-STLEEHTQWITDVRFS 606
            L+ A T++V    F+P  + +LATG  DK   LW   +  +K  T E H   I  V +S
Sbjct: 269 HLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWS 328
Query: 607 P-SLSRLATSSADRTVRVWD-------------TENPDYSLRTFTGHSTTVMSLDFHPSK 652
           P + + LA+S  DR + VWD              + P   L    GH+  +    ++P++
Sbjct: 329 PHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNE 388
Query: 653 EDLLCSCDNNSEIRYW 668
             ++CS   ++  + W
Sbjct: 389 PWVICSVSEDNIXQIW 404

>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 65/136 (47%), Gaps = 16/136 (11%)
Query: 551 IPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVK-STLEEHTQWITDVRFSP- 607
           + A T++V    F+P  + +LATG  DK   LW   +  +K  + E H   I  V++SP 
Sbjct: 277 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH 336
Query: 608 SLSRLATSSADRTVRVWD-------------TENPDYSLRTFTGHSTTVMSLDFHPSKED 654
           + + LA+S  DR + VWD              + P   L    GH+  +    ++P++  
Sbjct: 337 NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW 396
Query: 655 LLCSCDNNSEIRYWSI 670
           ++CS   ++ ++ W +
Sbjct: 397 IICSVSEDNIMQVWQM 412

>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 67/136 (49%), Gaps = 16/136 (11%)
Query: 551 IPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVK-STLEEHTQWITDVRFSP- 607
           + A T++V    F+P  + +LATG  DK   LW   +  +K  + E H   I  V++SP 
Sbjct: 275 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH 334
Query: 608 SLSRLATSSADRTVRVWD---------TEN----PDYSLRTFTGHSTTVMSLDFHPSKED 654
           + + LA+S  DR + VWD         TE+    P   L    GH+  +    ++P++  
Sbjct: 335 NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW 394
Query: 655 LLCSCDNNSEIRYWSI 670
           ++CS   ++ ++ W +
Sbjct: 395 IICSVSEDNIMQVWQM 410

>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 67/136 (49%), Gaps = 16/136 (11%)
Query: 551 IPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVK-STLEEHTQWITDVRFSP- 607
           + A T++V    F+P  + +LATG  DK   LW   +  +K  + E H   I  V++SP 
Sbjct: 273 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH 332
Query: 608 SLSRLATSSADRTVRVWD---------TEN----PDYSLRTFTGHSTTVMSLDFHPSKED 654
           + + LA+S  DR + VWD         TE+    P   L    GH+  +    ++P++  
Sbjct: 333 NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW 392
Query: 655 LLCSCDNNSEIRYWSI 670
           ++CS   ++ ++ W +
Sbjct: 393 IICSVSEDNIMQVWQM 408

>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 65/136 (47%), Gaps = 16/136 (11%)
Query: 551 IPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVK-STLEEHTQWITDVRFSP- 607
           + A T++V    F+P  + +LATG  DK   LW   +  +K  + E H   I  V++SP 
Sbjct: 269 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH 328
Query: 608 SLSRLATSSADRTVRVWD-------------TENPDYSLRTFTGHSTTVMSLDFHPSKED 654
           + + LA+S  DR + VWD              + P   L    GH+  +    ++P++  
Sbjct: 329 NETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW 388
Query: 655 LLCSCDNNSEIRYWSI 670
           ++CS   ++ ++ W +
Sbjct: 389 VICSVSEDNIMQVWQM 404

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/122 (25%), Positives = 58/122 (47%), Gaps = 9/122 (7%)
Query: 562 HFSPDGKLLATGGHDKKAVLWCTES---FTVKSTLEEHTQWITDVRFSPSLSRLATSSAD 618
           H   +  ++ T   D+   +W   S    T++  L  H   +  V F      + ++S D
Sbjct: 218 HLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKY--IVSASGD 275
Query: 619 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV 678
           RT++VW+T   ++ +RT  GH   +  L +   ++ L+ S  +++ IR W I  G+C  V
Sbjct: 276 RTIKVWNTSTCEF-VRTLNGHKRGIACLQY---RDRLVVSGSSDNTIRLWDIECGACLRV 331
Query: 679 FK 680
            +
Sbjct: 332 LE 333

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 49.3 bits (116), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 61/125 (48%), Gaps = 11/125 (8%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTES---FTVKSTLEEHTQWITDVRFSPSLSR 611
           T  V S  FS D + + +G  DK   LW T     +TV+   E H++W++ VRFSP+ S 
Sbjct: 128 TKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQD--ESHSEWVSCVRFSPNSSN 185
Query: 612 --LATSSADRTVRVWDTENPDYSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW 668
             + +   D+ V+VW+  N    L+T   GH+  + ++   P    L  S   + +   W
Sbjct: 186 PIIVSCGWDKLVKVWNLAN--CKLKTNHIGHTGYLNTVTVSPDGS-LCASGGKDGQAMLW 242
Query: 669 SINNG 673
            +N G
Sbjct: 243 DLNEG 247

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 61/125 (48%), Gaps = 11/125 (8%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTES---FTVKSTLEEHTQWITDVRFSPSLSR 611
           T  V S  FS D + + +G  DK   LW T     +TV+   E H++W++ VRFSP+ S 
Sbjct: 105 TKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQD--ESHSEWVSCVRFSPNSSN 162
Query: 612 --LATSSADRTVRVWDTENPDYSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW 668
             + +   D+ V+VW+  N    L+T   GH+  + ++   P    L  S   + +   W
Sbjct: 163 PIIVSCGWDKLVKVWNLAN--CKLKTNHIGHTGYLNTVTVSPDGS-LCASGGKDGQAMLW 219
Query: 669 SINNG 673
            +N G
Sbjct: 220 DLNEG 224

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 51/124 (41%), Gaps = 4/124 (3%)
Query: 564 SPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV 623
           S  G ++ +G +D   ++W          L  HT  I    +     R  ++S D T+R+
Sbjct: 277 SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRI 336
Query: 624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCN 683
           WD EN +  + T  GH+  V  L      +  L S   +  IR W  N+ S    +   N
Sbjct: 337 WDLENGEL-MYTLQGHTALVGLLRL---SDKFLVSAAADGSIRGWDANDYSRKFSYHHTN 392
Query: 684 LMPI 687
           L  I
Sbjct: 393 LSAI 396

>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 54/104 (51%), Gaps = 9/104 (8%)
Query: 591 STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT---ENPDYSLRTFTGHSTTVMSLD 647
           +TL  H+Q +  +R++P    LA+   D  V VW +   E     L+TFT H   V ++ 
Sbjct: 235 ATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVA 294
Query: 648 FHPSKEDLLCSCDNNSE--IRYWSINNGSCAGVF----KVCNLM 685
           + P + ++L +    S+  IR W++ +G+C        +VC+++
Sbjct: 295 WCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSIL 338

>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 54/104 (51%), Gaps = 9/104 (8%)
Query: 591 STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT---ENPDYSLRTFTGHSTTVMSLD 647
           +TL  H+Q +  +R++P    LA+   D  V VW +   E     L+TFT H   V ++ 
Sbjct: 224 ATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVA 283
Query: 648 FHPSKEDLLCSCDNNSE--IRYWSINNGSCAGVF----KVCNLM 685
           + P + ++L +    S+  IR W++ +G+C        +VC+++
Sbjct: 284 WCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSIL 327

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/188 (25%), Positives = 83/188 (44%), Gaps = 32/188 (17%)
Query: 502 LTDMDRFVDDGSL-DDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVES 560
           LT  + FV D +L  +N  +  S       D+  R  ++  G T+  F       S+V S
Sbjct: 72  LTGHNHFVSDLALSQENCFAISSS-----WDKTLRLWDLRTGTTYKRF---VGHQSEVYS 123
Query: 561 CHFSPDGKLLATGGHDKKAVLW-----CTESFTVKSTLEEHTQWITDVRFSPSLS----- 610
             FSPD + + + G +++  LW     C  S   K   E H+ W++ VR+SP +      
Sbjct: 124 VAFSPDNRQILSAGAEREIKLWNILGECKFSSAEK---ENHSDWVSCVRYSPIMKSANKV 180
Query: 611 -----RLATSSADRTVRVWDTENPDYSLR-TFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 664
                  A+   D  ++VW+T   ++ +R TF  H + V  L   P+ +  + +   + +
Sbjct: 181 QPFAPYFASVGWDGRLKVWNT---NFQIRYTFKAHESNVNHLSISPNGK-YIATGGKDKK 236
Query: 665 IRYWSINN 672
           +  W I N
Sbjct: 237 LLIWDILN 244

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 46.2 bits (108), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 9/112 (8%)
Query: 566 DGKLLATGGHDKKAVLWCTES------FTV-KSTLEEHTQWITDVRFSPSLSRLATSSAD 618
           D  +L +G  DK  ++W          F +    L  H  +++D+  S       +SS D
Sbjct: 38  DSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWD 97
Query: 619 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI 670
           +T+R+WD      + + F GH + V S+ F P    +L S     EI+ W+I
Sbjct: 98  KTLRLWDLRTGT-TYKRFVGHQSEVYSVAFSPDNRQIL-SAGAEREIKLWNI 147

>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 54/104 (51%), Gaps = 9/104 (8%)
Query: 591 STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT---ENPDYSLRTFTGHSTTVMSLD 647
           +TL  H+Q +  +R++P    LA+   D  V VW +   E     L+TFT H   V ++ 
Sbjct: 144 ATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVA 203
Query: 648 FHPSKEDLLCSCDNNSE--IRYWSINNGSCAGVF----KVCNLM 685
           + P + ++L +    S+  IR W++ +G+C        +VC+++
Sbjct: 204 WCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSIL 247

>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice Length = 753

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 7/84 (8%)
Query: 552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWC----TESFTVKSTLEEHTQWITDVRFSP 607
           PA+  +    + + + +   TGG D    +W      +++ ++STLE H+ W+ DV +SP
Sbjct: 155 PATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP 214
Query: 608 SL---SRLATSSADRTVRVWDTEN 628
           ++   S LA+ S DRT  +W  +N
Sbjct: 215 TVLLRSYLASVSQDRTCIIWTQDN 238

>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice Length = 753

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 596 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL-RTFTGHSTTVMSLDF-HPSKE 653
           H + I D        RLAT S+D+T+++++ E   + L  T TGH   V  +D+ HP   
Sbjct: 8   HNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG 67
Query: 654 DLLCSCDNNSEIRYWSINNGSCAGV 678
            +L SC  + ++  W   NG  + +
Sbjct: 68  TILASCSYDGKVLIWKEENGRWSQI 92

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 66/149 (44%), Gaps = 17/149 (11%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTES-FTVKSTLEEHTQWITDVRFSPS-LSRLATS 615
           + S    P    + +G  D    LW  E+ + ++ T E H  ++  V F+P   S  A+ 
Sbjct: 100 IRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASG 159
Query: 616 SADRTVRVWD--TENPDYSLRTFTGHSTTVMSLDFHPSKED-LLCSCDNNSEIRYWSINN 672
             DRTV+VW      P+++L   TG    V  +D++P  +   + +  ++  I+ W    
Sbjct: 160 CLDRTVKVWSLGQSTPNFTLT--TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT 217
Query: 673 GSCAGVFK--VCNL--------MPIILKG 691
            SC    +  + N+        +PII+ G
Sbjct: 218 KSCVATLEGHMSNVSFAVFHPTLPIIISG 246

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 50/124 (40%), Gaps = 4/124 (3%)
Query: 564 SPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV 623
           S  G ++ +G +D   ++W          L  HT  I    +     R  ++S D T+R+
Sbjct: 277 SGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRI 336
Query: 624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCN 683
           WD EN +    T  GH+  V  L      +  L S   +  IR W  N+ S    +   N
Sbjct: 337 WDLENGELXY-TLQGHTALVGLLRL---SDKFLVSAAADGSIRGWDANDYSRKFSYHHTN 392
Query: 684 LMPI 687
           L  I
Sbjct: 393 LSAI 396

>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade Length = 379

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 596 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL-RTFTGHSTTVMSLDF-HPSKE 653
           H + I D        RLAT S+D+T+++++ E   + L  T TGH   V  +D+ HP   
Sbjct: 10  HNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG 69
Query: 654 DLLCSCDNNSEIRYWSINNG 673
            +L SC  + ++  W   NG
Sbjct: 70  TILASCSYDGKVLIWKEENG 89

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 66/149 (44%), Gaps = 17/149 (11%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTES-FTVKSTLEEHTQWITDVRFSPS-LSRLATS 615
           + S    P    + +G  D    LW  E+ + ++ T E H  ++  V F+P   S  A+ 
Sbjct: 100 IRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASG 159
Query: 616 SADRTVRVWD--TENPDYSLRTFTGHSTTVMSLDFHPSKED-LLCSCDNNSEIRYWSINN 672
             DRTV+VW      P+++L   TG    V  +D++P  +   + +  ++  I+ W    
Sbjct: 160 CLDRTVKVWSLGQSTPNFTLT--TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT 217
Query: 673 GSCAGVFK--VCNL--------MPIILKG 691
            SC    +  + N+        +PII+ G
Sbjct: 218 KSCVATLEGHMSNVSFAVFHPTLPIIISG 246

>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Native Version Length = 297

Iteration: 1
 Score = 46.2 bits (108), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 596 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL-RTFTGHSTTVMSLDF-HPSKE 653
           H + I D        RLAT S+D+T+++++ E   + L  T TGH   V  +D+ HP   
Sbjct: 8   HNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG 67
Query: 654 DLLCSCDNNSEIRYWSINNG 673
            +L SC  + ++  W   NG
Sbjct: 68  TILASCSYDGKVLIWKEENG 87

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 65/149 (43%), Gaps = 17/149 (11%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTES-FTVKSTLEEHTQWITDVRFSPS-LSRLATS 615
           + S    P    + +G  D    LW  E+ + ++ T E H  ++  V F+P   S  A+ 
Sbjct: 100 IRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASG 159
Query: 616 SADRTVRVWD--TENPDYSLRTFTGHSTTVMSLDFHP-SKEDLLCSCDNNSEIRYWSINN 672
             DRTV+VW      P+++L   TG    V  +D++P   +  + +  ++  I+ W    
Sbjct: 160 CLDRTVKVWSLGQSTPNFTLT--TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT 217
Query: 673 GSCAGV---------FKVCN-LMPIILKG 691
            SC            F V +  +PII+ G
Sbjct: 218 KSCVATLEGHMSNVSFAVFHPTLPIIISG 246

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 65/149 (43%), Gaps = 17/149 (11%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTES-FTVKSTLEEHTQWITDVRFSPS-LSRLATS 615
           + S    P    + +G  D    LW  E+ + ++ T E H  ++  V F+P   S  A+ 
Sbjct: 100 IRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASG 159
Query: 616 SADRTVRVWD--TENPDYSLRTFTGHSTTVMSLDFHP-SKEDLLCSCDNNSEIRYWSINN 672
             DRTV+VW      P+++L   TG    V  +D++P   +  + +  ++  I+ W    
Sbjct: 160 CLDRTVKVWSLGQSTPNFTLT--TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT 217
Query: 673 GSCAGV---------FKVCN-LMPIILKG 691
            SC            F V +  +PII+ G
Sbjct: 218 KSCVATLEGHMSNVSFAVFHPTLPIIISG 246

>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 297

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 596 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL-RTFTGHSTTVMSLDF-HPSKE 653
           H + I D        R+AT S+D+T+++++ E   + L  T TGH   V  +D+ HP   
Sbjct: 8   HNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG 67
Query: 654 DLLCSCDNNSEIRYWSINNG 673
            +L SC  + ++  W   NG
Sbjct: 68  TILASCSYDGKVMIWKEENG 87

>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Selenomethionine Version Length = 297

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 7/84 (8%)
Query: 552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWC----TESFTVKSTLEEHTQWITDVRFSP 607
           PA+  +    + + + +   TGG D    +W      +++ ++STLE H+ W+ DV +SP
Sbjct: 155 PATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP 214
Query: 608 SL---SRLATSSADRTVRVWDTEN 628
           ++   S  A+ S DRT  +W  +N
Sbjct: 215 TVLLRSYXASVSQDRTCIIWTQDN 238

>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Selenomethionine Version Length = 297

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Query: 596 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL-RTFTGHSTTVMSLDF-HPSKE 653
           H + I D        R AT S+D+T+++++ E   + L  T TGH   V  +D+ HP   
Sbjct: 8   HNEXIHDAVXDYYGKRXATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG 67
Query: 654 DLLCSCDNNSEIRYWSINNG 673
            +L SC  + ++  W   NG
Sbjct: 68  TILASCSYDGKVXIWKEENG 87

>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 7/78 (8%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-------HTQWITDVRFSP 607
           T  V S  ++PDG L A+ G D   VL+     T     E+       H+  +  + +SP
Sbjct: 190 TKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP 249
Query: 608 SLSRLATSSADRTVRVWD 625
             +++A++SAD+T+++W+
Sbjct: 250 DGTKIASASADKTIKIWN 267

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	743
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-19
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	5e-16
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-14
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	9e-12
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-11
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	4e-10
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	6e-19
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-14
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	5e-08
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	6e-08
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-06
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	4e-04
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-16
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-12
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	3e-09
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-05
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	6e-05
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	6e-16
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-13
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	7e-12
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	9e-07
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-05
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	5e-05
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	4e-04
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	4e-14
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	4e-08
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	6e-08
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-13
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-12
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	6e-11
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	8e-04
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	3e-13
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-08
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-08
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	4e-07
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-11
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	2e-08
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-06
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	3e-05
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-11
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-10
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-09
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-08
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	4e-08
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	6e-11
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	2e-09
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-04
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	8e-04
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	7e-11
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-10
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	4e-07
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	9e-11
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	1e-06
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	3e-10
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	2e-07
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	4e-07
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	2e-06
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	2e-05
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	7e-10
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	3e-09
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	2e-06
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	2e-05
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	9e-05
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	4e-09
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	6e-09
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	3e-07
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	4e-07
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	5e-04
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	7e-09
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	3e-07
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-05
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.003
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	8e-07
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	8e-07
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	5e-06
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.001
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.002
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	1e-05
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	0.001
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	4e-04
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	0.001

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 87.9 bits (216), Expect = 2e-19
 Identities = 29/126 (23%), Positives = 51/126 (40%), Gaps = 2/126 (1%)

Query: 543 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITD 602
           +         +  +  E+      G  L +G  DK   +W   +     TL  H  W+  
Sbjct: 193 WAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRG 252

Query: 603 VRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 662
           V F      + + + D+T+RVWD +N    ++T   H   V SLDFH +    + +   +
Sbjct: 253 VLFHSGGKFILSCADDKTLRVWDYKNKR-CMKTLNAHEHFVTSLDFHKT-APYVVTGSVD 310

Query: 663 SEIRYW 668
             ++ W
Sbjct: 311 QTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 77.5 bits (189), Expect = 5e-16
 Identities = 20/82 (24%), Positives = 35/82 (42%)

Query: 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDV 603
           T      +    + V    F   GK + +   DK   +W  ++     TL  H  ++T +
Sbjct: 236 TGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSL 295

Query: 604 RFSPSLSRLATSSADRTVRVWD 625
            F  +   + T S D+TV+VW+
Sbjct: 296 DFHKTAPYVVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 73.6 bits (179), Expect = 1e-14
 Identities = 31/157 (19%), Positives = 53/157 (33%), Gaps = 22/157 (14%)

Query: 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDV 603
           T    +        V     + DG L+A+  +D+   +W   +   K+ L EH   +  +
Sbjct: 132 TGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECI 191

Query: 604 RF--------------------SPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTV 643
            +                          L + S D+T+++WD       L T  GH   V
Sbjct: 192 SWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM-CLMTLVGHDNWV 250

Query: 644 MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 680
             + FH      + SC ++  +R W   N  C     
Sbjct: 251 RGVLFHSG-GKFILSCADDKTLRVWDYKNKRCMKTLN 286

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 64.4 bits (155), Expect = 9e-12
 Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 1/79 (1%)

Query: 590 KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFH 649
           K  L  H   +T V F P  S + ++S D T++VWD E  D+  RT  GH+ +V  + F 
Sbjct: 10  KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDF-ERTLKGHTDSVQDISFD 68

Query: 650 PSKEDLLCSCDNNSEIRYW 668
            S + L     + +   + 
Sbjct: 69  HSGKLLASCSADMTIKLWD 87

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 63.2 bits (152), Expect = 2e-11
 Identities = 30/168 (17%), Positives = 58/168 (34%), Gaps = 44/168 (26%)

Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDV----------- 603
            S V    F P   ++ +   D    +W  E+   + TL+ HT  + D+           
Sbjct: 17  RSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLAS 76

Query: 604 -------------------------------RFSPSLSRLATSSADRTVRVWDTENPDYS 632
                                             P+   + ++S D+T+++W+ +     
Sbjct: 77  CSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYC- 135

Query: 633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 680
           ++TFTGH   V  +  +     L+ SC N+  +R W +    C    +
Sbjct: 136 VKTFTGHREWVRMVRPNQD-GTLIASCSNDQTVRVWVVATKECKAELR 182

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 59.4 bits (142), Expect = 4e-10
 Identities = 27/139 (19%), Positives = 47/139 (33%), Gaps = 20/139 (14%)

Query: 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT 620
               P+G  + +   DK   +W  ++     T   H +W+  VR +   + +A+ S D+T
Sbjct: 107 VSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQT 166

Query: 621 VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE-------------------DLLCSCDN 661
           VRVW     +        H   V  + + P                        L S   
Sbjct: 167 VRVWVVATKE-CKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSR 225

Query: 662 NSEIRYWSINNGSCAGVFK 680
           +  I+ W ++ G C     
Sbjct: 226 DKTIKMWDVSTGMCLMTLV 244

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 86.7 bits (213), Expect = 6e-19
 Identities = 29/128 (22%), Positives = 40/128 (31%), Gaps = 4/128 (3%)

Query: 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW--IT 601
                Q      S + +  F P+G   ATG  D    L+   +     T         IT
Sbjct: 215 EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGIT 274

Query: 602 DVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN 661
            V FS S   L     D    VWD    D       GH   V  L         + +   
Sbjct: 275 SVSFSKSGRLLLAGYDDFNCNVWDALKAD-RAGVLAGHDNRVSCLGVTDD-GMAVATGSW 332

Query: 662 NSEIRYWS 669
           +S ++ W+
Sbjct: 333 DSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 73.2 bits (178), Expect = 1e-14
 Identities = 30/124 (24%), Positives = 46/124 (37%), Gaps = 2/124 (1%)

Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 617
           V S   +PD +L  +G  D  A LW       + T   H   I  + F P+ +  AT S 
Sbjct: 187 VMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD 246

Query: 618 DRTVRV-WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA 676
           D T R+     + +    +       + S+ F  S   LL +  ++     W       A
Sbjct: 247 DATCRLFDLRADQELMTYSHDNIICGITSVSFSKS-GRLLLAGYDDFNCNVWDALKADRA 305

Query: 677 GVFK 680
           GV  
Sbjct: 306 GVLA 309

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 53.2 bits (126), Expect = 5e-08
 Identities = 21/189 (11%), Positives = 53/189 (28%)

Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
            +K+ + H+  D +LL +   D K ++W + +      +   + W+    ++PS + +A 
Sbjct: 55  LAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVAC 114

Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
              D    +++ +  + ++R     +     L      +D      +             
Sbjct: 115 GGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETG 174

Query: 675 CAGVFKVCNLMPIILKGCFILNSIFNCYLLLHRIFLNLLSVSEWCNPDEISTSSWKDSCC 734
                   +   ++         +F          L  +             S     C 
Sbjct: 175 QQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICF 234

Query: 735 SHRELYLYT 743
                   T
Sbjct: 235 FPNGNAFAT 243

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 52.8 bits (125), Expect = 6e-08
 Identities = 17/82 (20%), Positives = 32/82 (39%), Gaps = 1/82 (1%)

Query: 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL 646
              + TL  H   I  + +      L ++S D  + +WD+   +  +      S+ VM+ 
Sbjct: 45  MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNK-VHAIPLRSSWVMTC 103

Query: 647 DFHPSKEDLLCSCDNNSEIRYW 668
            + PS   + C   +N    Y 
Sbjct: 104 AYAPSGNYVACGGLDNICSIYN 125

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 48.6 bits (114), Expect = 2e-06
 Identities = 22/119 (18%), Positives = 48/119 (40%), Gaps = 2/119 (1%)

Query: 575 HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 634
            D    LW  E+    +T   HT  +  +  +P      + + D + ++WD        +
Sbjct: 162 GDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGM-CRQ 220

Query: 635 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNLMPIILKGCF 693
           TFTGH + + ++ F P+  +   +  +++  R + +        +   N++  I    F
Sbjct: 221 TFTGHESDINAICFFPN-GNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSF 278

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.9 bits (94), Expect = 4e-04
 Identities = 17/137 (12%), Positives = 36/137 (26%), Gaps = 4/137 (2%)

Query: 600 ITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC 659
           I D R + + + L+  + +               RT  GH   + ++ +      LL S 
Sbjct: 18  IRDARKACADATLSQITNNIDPVGRIQMRT---RRTLRGHLAKIYAMHWGTD-SRLLVSA 73

Query: 660 DNNSEIRYWSINNGSCAGVFKVCNLMPIILKGCFILNSIFNCYLLLHRIFLNLLSVSEWC 719
             + ++  W     +      + +   +        N +    L       NL +     
Sbjct: 74  SQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNV 133

Query: 720 NPDEISTSSWKDSCCSH 736
                         C  
Sbjct: 134 RVSRELAGHTGYLSCCR 150

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 80.3 bits (196), Expect = 1e-16
 Identities = 20/181 (11%), Positives = 48/181 (26%), Gaps = 6/181 (3%)

Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTES--FTVKSTLEEHTQWITDVRFSPSLSRLATS 615
           +    ++ D   +A   ++ +  ++      +     L+EH   +T V ++P  +R+ T 
Sbjct: 10  ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC 69

Query: 616 SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC 675
             DR   VW  +   +                     E        +  I        + 
Sbjct: 70  GTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEND 129

Query: 676 AGVFKVCNLMPIILKGCFILNSIFNCYLLLHRIFLNLLSVSEWCNPDEISTSSWKDSCCS 735
             V K             +L+  ++   +L            +    +        +   
Sbjct: 130 WWVCKHIKKPIR----STVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWG 185

Query: 736 H 736
            
Sbjct: 186 S 186

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 66.8 bits (161), Expect = 2e-12
 Identities = 9/81 (11%), Positives = 32/81 (39%), Gaps = 2/81 (2%)

Query: 596 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS-LRTFTGHSTTVMSLDFHPSKED 654
             + I+   ++   +++A    +  V +++     +  +     H+  V  +D+ P   +
Sbjct: 6   LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAP-DSN 64

Query: 655 LLCSCDNNSEIRYWSINNGSC 675
            + +C  +     W++   + 
Sbjct: 65  RIVTCGTDRNAYVWTLKGRTW 85

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 57.2 bits (136), Expect = 3e-09
 Identities = 18/117 (15%), Positives = 36/117 (30%), Gaps = 6/117 (5%)

Query: 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT 620
             F  +  L+A  GHD   VL+  +S   K +                 +R    + D+ 
Sbjct: 249 VTFITESSLVAA-GHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKK 307

Query: 621 VRVWDTENPDYSLRTFTGHSTTVMSLDFHP---SKEDLLCSCDNNSEIRYWSINNGS 674
                +      L   + H  +V  +       +K    C+   +  +  W + +  
Sbjct: 308 ASSEGSAAAGAGL--DSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 362

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 45.2 bits (105), Expect = 2e-05
 Identities = 11/86 (12%), Positives = 25/86 (29%), Gaps = 5/86 (5%)

Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP----SLS 610
               +                DKKA    + +         H   ++ +          S
Sbjct: 284 LDVPKQSSQRGLTARERFQNLDKKASSEGSAAAG-AGLDSLHKNSVSQISVLSGGKAKCS 342

Query: 611 RLATSSADRTVRVWDTENPDYSLRTF 636
           +  T+  D  + +WD  + + +L+  
Sbjct: 343 QFCTTGMDGGMSIWDVRSLESALKDL 368

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 43.7 bits (101), Expect = 6e-05
 Identities = 22/136 (16%), Positives = 48/136 (35%), Gaps = 4/136 (2%)

Query: 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK--STLEEHTQWIT 601
            + +   +     +V    ++PD   + T G D+ A +W  +  T K    +    +   
Sbjct: 40  KWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAAR 99

Query: 602 DVRFSPSLSRLATSSADRTVRVWD--TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC 659
            VR++P+  + A  S  R + +     EN  +  +       + +          LL + 
Sbjct: 100 CVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAG 159

Query: 660 DNNSEIRYWSINNGSC 675
             + + R +S      
Sbjct: 160 SCDFKCRIFSAYIKEV 175

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 77.9 bits (190), Expect = 6e-16
 Identities = 28/142 (19%), Positives = 55/142 (38%), Gaps = 18/142 (12%)

Query: 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS------------TL 593
           +E +        V S  F+ DG+ + +G  D+   LW  ++   KS            T 
Sbjct: 245 SENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTY 304

Query: 594 EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS-- 651
             H  ++  V  + +   + + S DR V  WD ++ +  L    GH  +V+S+       
Sbjct: 305 IGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGN-PLLMLQGHRNSVISVAVANGSS 363

Query: 652 ---KEDLLCSCDNNSEIRYWSI 670
              + ++  +   + + R W  
Sbjct: 364 LGPEYNVFATGSGDCKARIWKY 385

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 69.8 bits (169), Expect = 3e-13
 Identities = 16/79 (20%), Positives = 29/79 (36%), Gaps = 6/79 (7%)

Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDV------RFSPS 608
              V S   + + + + +G  D+  + W  +S      L+ H   +  V         P 
Sbjct: 308 KDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPE 367

Query: 609 LSRLATSSADRTVRVWDTE 627
            +  AT S D   R+W  +
Sbjct: 368 YNVFATGSGDCKARIWKYK 386

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 65.6 bits (158), Expect = 7e-12
 Identities = 26/138 (18%), Positives = 57/138 (41%), Gaps = 19/138 (13%)

Query: 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-------HTQWITDVRFSPSLSRLA 613
                DGK +A G  D+   +W +E+  +   L+        H   +  V F+     + 
Sbjct: 211 AVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVV 270

Query: 614 TSSADRTVRVWDTENPD-----------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 662
           + S DR+V++W+ +N +               T+ GH   V+S+    + ++ + S   +
Sbjct: 271 SGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQN-DEYILSGSKD 329

Query: 663 SEIRYWSINNGSCAGVFK 680
             + +W   +G+   + +
Sbjct: 330 RGVLFWDKKSGNPLLMLQ 347

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.4 bits (116), Expect = 9e-07
 Identities = 35/139 (25%), Positives = 52/139 (37%), Gaps = 21/139 (15%)

Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE------------------H 596
           TS V    FS DG+ LATG  +K   ++     ++ + L +                   
Sbjct: 62  TSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSS 120

Query: 597 TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLL 656
             +I  V FSP    LAT + DR +R+WD EN               +    +    D L
Sbjct: 121 DLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKI--VMILQGHEQDIYSLDYFPSGDKL 178

Query: 657 CSCDNNSEIRYWSINNGSC 675
            S   +  +R W +  G C
Sbjct: 179 VSGSGDRTVRIWDLRTGQC 197

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.9 bits (107), Expect = 1e-05
 Identities = 42/198 (21%), Positives = 67/198 (33%), Gaps = 49/198 (24%)

Query: 552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRF------ 605
           P+S   + S  FSPDGK LATG  D+   +W  E+  +   L+ H Q I  + +      
Sbjct: 118 PSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDK 177

Query: 606 ------------------------------------SPSLSRLATSSADRTVRVWDTENP 629
                                                     +A  S DR VRVWD+E  
Sbjct: 178 LVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETG 237

Query: 630 ------DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCN 683
                 D    + TGH  +V S+ F       + S   +  ++ W++ N +     K  N
Sbjct: 238 FLVERLDSENESGTGHKDSVYSVVFTRD-GQSVVSGSLDRSVKLWNLQNANNKSDSKTPN 296

Query: 684 LMPIILKGCFILNSIFNC 701
                +      + + + 
Sbjct: 297 SGTCEVTYIGHKDFVLSV 314

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.0 bits (102), Expect = 5e-05
 Identities = 18/166 (10%), Positives = 44/166 (26%), Gaps = 20/166 (12%)

Query: 595 EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP-----------------DYSLRTFT 637
           +HT  +  V+FS     LAT   ++T +V+   +                  + +  +  
Sbjct: 60  DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSP 118

Query: 638 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNLMPIILKGCFILNS 697
                + S+ F P  + L    ++     +   N      +      +  +         
Sbjct: 119 SSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKL 178

Query: 698 IFNCYLLLHRIFLNLLSVSEWCNPDEISTSSWKDSCCSHRELYLYT 743
           +         + +  L   +      I       +       Y+  
Sbjct: 179 VSGSG--DRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAA 222

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.9 bits (94), Expect = 4e-04
 Identities = 13/96 (13%), Positives = 29/96 (30%), Gaps = 8/96 (8%)

Query: 591 STLEEHTQWITDVRFSPSLSR---LATSSADRTVRVWDTENP---DYSLRTFTGHSTTVM 644
           +    H++ I                    +    +++   P   D  L     H++ V 
Sbjct: 7   NQRANHSKPIPPFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVC 66

Query: 645 SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 680
            + F    E L   C+     + + +++GS      
Sbjct: 67  CVKFSNDGEYLATGCNKT--TQVYRVSDGSLVARLS 100

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 72.2 bits (175), Expect = 4e-14
 Identities = 28/185 (15%), Positives = 63/185 (34%), Gaps = 8/185 (4%)

Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
            + V +C    +   + TG  DK   ++ + +      L  H   +  ++++     L +
Sbjct: 12  MTSVITC-LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVS 69

Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
            S DRTVRVWD +    +      +ST              + +   ++ +  W +   S
Sbjct: 70  GSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKES 129

Query: 675 CAGVFKVCNLMPIILKGCFILNSIFNCYLLLHRIFLNLLSVSEWCNPDEISTSSWKDSCC 734
                   +  P+      + ++       +  +  ++ SV        I  S   D+  
Sbjct: 130 SVPDHGEEHDYPL------VFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTL 183

Query: 735 SHREL 739
              ++
Sbjct: 184 IVWDV 188

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.7 bits (127), Expect = 4e-08
 Identities = 6/90 (6%), Positives = 24/90 (26%)

Query: 582 WCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHST 641
              ++         H   ++ +        +  S ++    +++  +           + 
Sbjct: 266 RGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDAD 325

Query: 642 TVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 671
            + S++F           D  S +     +
Sbjct: 326 QIWSVNFKGKTLVAAVEKDGQSFLEILDFS 355

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.0 bits (125), Expect = 6e-08
 Identities = 10/69 (14%), Positives = 22/69 (31%), Gaps = 3/69 (4%)

Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFT-VKSTLEEHTQWITDVRFSPSLSRLATSS 616
                F     +L +G  + +  ++   S   V + + +    I  V F    + +A   
Sbjct: 285 SAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVE 342

Query: 617 ADRTVRVWD 625
            D    +  
Sbjct: 343 KDGQSFLEI 351

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.2 bits (170), Expect = 2e-13
 Identities = 13/66 (19%), Positives = 22/66 (33%), Gaps = 1/66 (1%)

Query: 560 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR 619
           S  F+  GK   + G D     W T         +  +  +     S     + T S D+
Sbjct: 270 SLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISVDDKYIVTGSGDK 328

Query: 620 TVRVWD 625
              V++
Sbjct: 329 KATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.8 bits (161), Expect = 2e-12
 Identities = 29/201 (14%), Positives = 51/201 (25%), Gaps = 8/201 (3%)

Query: 548 FQLIPASTSKVESCHFSPDGKLLATGG-HDKKAVLWCTESFTVKSTLEEHTQWITDVRFS 606
           FQ    S     S H + DG++       D              +TL  H + +  V  S
Sbjct: 3   FQGAMGSK-PAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLN-HGEVVCAVTIS 60

Query: 607 PSLSRLATSSADRTVRVWDTENPDY----SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 662
                + T      V+VWD  +P      S          + S    P    L+   + +
Sbjct: 61  NPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEAS 119

Query: 663 SEIRYWSINNGSCAGVFKVCNLMPIILKGCFILNSIFNCYLLLHRIFLNLLSVSEWCNPD 722
           +   +               +            + +         I +  L         
Sbjct: 120 TLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQF 179

Query: 723 EISTSSWKDSCCSHRELYLYT 743
           +  T        S+    L+T
Sbjct: 180 QGHTDGASCIDISNDGTKLWT 200

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.1 bits (149), Expect = 6e-11
 Identities = 17/115 (14%), Positives = 41/115 (35%), Gaps = 4/115 (3%)

Query: 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS 615
           S++ S  + P G+ LA G       +              H   +  ++F+       ++
Sbjct: 225 SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQL-HLHESCVLSLKFAYCGKWFVST 283

Query: 616 SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI 670
             D  +  W T  P  +    +  S++V+S D     +  + +   + +   + +
Sbjct: 284 GKDNLLNAWRT--PYGASIFQSKESSSVLSCDISVD-DKYIVTGSGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (91), Expect = 8e-04
 Identities = 13/28 (46%), Positives = 17/28 (60%)

Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLW 582
           +S V SC  S D K + TG  DKKA ++
Sbjct: 306 SSSVLSCDISVDDKYIVTGSGDKKATVY 333

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 69.1 bits (167), Expect = 3e-13
 Identities = 13/86 (15%), Positives = 32/86 (37%), Gaps = 2/86 (2%)

Query: 592 TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD--TENPDYSLRTFTGHSTTVMSLDFH 649
             +    +I+D++  PS S L  +S D ++ V+    +  +  L     +   ++  +F 
Sbjct: 6   IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFI 65

Query: 650 PSKEDLLCSCDNNSEIRYWSINNGSC 675
            + +  +       EI    +     
Sbjct: 66  DNTDLQIYVGTVQGEILKVDLIGSPS 91

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.9 bits (130), Expect = 1e-08
 Identities = 14/138 (10%), Positives = 31/138 (22%), Gaps = 3/138 (2%)

Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE---EHTQWITDVR 604
            Q+  A    +      P   LL     D    ++  +       L     +   +    
Sbjct: 4   VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCN 63

Query: 605 FSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 664
           F  +          +   +        S +  T +   +         +D L +   +  
Sbjct: 64  FIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGL 123

Query: 665 IRYWSINNGSCAGVFKVC 682
           I      N     +    
Sbjct: 124 IEVIDPRNYGDGVIAVKN 141

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.1 bits (128), Expect = 2e-08
 Identities = 16/88 (18%), Positives = 35/88 (39%), Gaps = 6/88 (6%)

Query: 560 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR 619
           S  FSP  K L T G D     W  ++        +     + V+ + S + L  +++D 
Sbjct: 256 SIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF-NEDSVVKIACSDNILCLATSDD 314

Query: 620 TVRVWDTENPDYSLRTFTGHSTTVMSLD 647
           T +     +     +T   +++++  + 
Sbjct: 315 TFKTNAAID-----QTIELNASSIYIIF 337

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.2 bits (118), Expect = 4e-07
 Identities = 13/126 (10%), Positives = 36/126 (28%), Gaps = 17/126 (13%)

Query: 561 CHFSPDGKLLATGGHDKKAVLWCTES---------------FTVKSTLEEHTQWITDVRF 605
                + +  A    D +  +   +                  +          +  + F
Sbjct: 200 ALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEF 259

Query: 606 SPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI 665
           SP    L T+ +D  +  W+ +     ++ F   +     +    S   L  +  +++  
Sbjct: 260 SPRHKFLYTAGSDGIISCWNLQTRK-KIKNFAKFNEDS-VVKIACSDNILCLATSDDTFK 317

Query: 666 RYWSIN 671
              +I+
Sbjct: 318 TNAAID 323

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 64.2 bits (154), Expect = 1e-11
 Identities = 11/88 (12%), Positives = 28/88 (31%), Gaps = 2/88 (2%)

Query: 588 TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLD 647
           ++      H + IT +  S     L ++ A+  +  WD      +      H+T +  + 
Sbjct: 3   SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIK 62

Query: 648 FHPSKEDLLCSCDNNSEIRYWSINNGSC 675
                +  L +   +  ++         
Sbjct: 63  TTSKGD--LFTVSWDDHLKVVPAGGSGV 88

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 54.2 bits (128), Expect = 2e-08
 Identities = 23/189 (12%), Positives = 47/189 (24%), Gaps = 8/189 (4%)

Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-HTQWITDVRFSPSLSRLA 613
              + +   S DGK L +   +     W   +        + H   IT ++ +     L 
Sbjct: 12  NKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSK-GDLF 70

Query: 614 TSSADRTVRVWD--TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW--- 668
           T S D  ++V        D S       S+  + L      +  + +C  +  I      
Sbjct: 71  TVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKL 130

Query: 669 -SINNGSCAGVFKVCNLMPIILKGCFILNSIFNCYLLLHRIFLNLLSVSEWCNPDEISTS 727
             +     +    + N    +  G                  +  +           S +
Sbjct: 131 TEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNN 190

Query: 728 SWKDSCCSH 736
                    
Sbjct: 191 GAFLVATDQ 199

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 48.4 bits (113), Expect = 1e-06
 Identities = 12/67 (17%), Positives = 26/67 (38%), Gaps = 2/67 (2%)

Query: 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL--EEHTQWITDVRFSPSLSRLATSSAD 618
             +SPD   LATG  D   ++W     +    +    H     +     + + + ++  D
Sbjct: 230 VSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQD 289

Query: 619 RTVRVWD 625
             ++ W+
Sbjct: 290 SNIKFWN 296

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 44.2 bits (102), Expect = 3e-05
 Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 2/90 (2%)

Query: 582 WCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP-DYSLRTFTGHS 640
                    ++   HT  +  V +SP   RLAT S D +V VW+   P D+ +     H+
Sbjct: 209 ANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHA 268

Query: 641 TTVMSLDFHPSKEDLLCSCDNNSEIRYWSI 670
            + ++     + E  + S   +S I++W++
Sbjct: 269 MSSVNSVIWLN-ETTIVSAGQDSNIKFWNV 297

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.5 bits (155), Expect = 1e-11
 Identities = 17/120 (14%), Positives = 31/120 (25%), Gaps = 2/120 (1%)

Query: 582 WCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHST 641
           W          L+ H   +         +R+ + S D T++VW        LRT  GH+ 
Sbjct: 1   WRRGELKSPKVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGK-CLRTLVGHTG 58

Query: 642 TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNLMPIILKGCFILNSIFNC 701
            V S     +      +          +                  + +   +  S    
Sbjct: 59  GVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDAT 118

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.0 bits (146), Expect = 2e-10
 Identities = 21/121 (17%), Positives = 47/121 (38%), Gaps = 3/121 (2%)

Query: 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT 620
                DG  + +G  D    +W  E+     TL  H    + +    ++  L + +AD T
Sbjct: 181 YSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNI--LVSGNADST 238

Query: 621 VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 680
           V++WD +     L+T  G +    ++      ++ + +  ++  ++ W +  G       
Sbjct: 239 VKIWDIKTGQC-LQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLV 297

Query: 681 V 681
            
Sbjct: 298 T 298

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.9 bits (138), Expect = 2e-09
 Identities = 18/189 (9%), Positives = 52/189 (27%), Gaps = 12/189 (6%)

Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
              V +C     G  + +G  D    +W   +     TL  HT  +   +   ++    +
Sbjct: 16  DDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGS 74

Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
           +     V   +T    ++L   T     +   +          S D    +         
Sbjct: 75  TDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVS----GSRDATLRVWDIETGQCL 130

Query: 675 CAGVFKVCNLMPIILKGCFILNSIFNCYLLLHRIFLNLLSVSEWCNPDEISTSSWKDSCC 734
              +  V  +  +   G  +++  ++  + +                  +   + +    
Sbjct: 131 HVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVW-------DPETETCLHTLQGHTNRVYSL 183

Query: 735 SHRELYLYT 743
               +++ +
Sbjct: 184 QFDGIHVVS 192

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.4 bits (129), Expect = 2e-08
 Identities = 21/123 (17%), Positives = 42/123 (34%), Gaps = 14/123 (11%)

Query: 560 SCHFSPDGKLLATGGHDKKAVLW---CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS 616
           +        +L +G  D    +W     +         +H   +T ++F+ +     TSS
Sbjct: 220 TSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFV--ITSS 277

Query: 617 ADRTVRVWDTENPDYSLRTFT-----GHSTTVMSLDFHPSKEDLLCSCDNNSE---IRYW 668
            D TV++WD +  +  +R        G    V  +    +K        N +E   +   
Sbjct: 278 DDGTVKLWDLKTGE-FIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVL 336

Query: 669 SIN 671
             +
Sbjct: 337 DFD 339

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.3 bits (126), Expect = 4e-08
 Identities = 31/123 (25%), Positives = 57/123 (46%), Gaps = 6/123 (4%)

Query: 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT 620
                DG+ + +G +D    +W  E+ T   TL+ HT  +  ++F      + + S D +
Sbjct: 141 RCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGI--HVVSGSLDTS 198

Query: 621 VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 680
           +RVWD E  +  + T TGH +    ++      ++L S + +S ++ W I  G C    +
Sbjct: 199 IRVWDVETGN-CIHTLTGHQSLTSGMELKD---NILVSGNADSTVKIWDIKTGQCLQTLQ 254

Query: 681 VCN 683
             N
Sbjct: 255 GPN 257

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 61.9 bits (148), Expect = 6e-11
 Identities = 19/148 (12%), Positives = 46/148 (31%), Gaps = 13/148 (8%)

Query: 592 TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS 651
           T+  H + IT +  +P    L + S D  +  W + +          HS  ++SLD   +
Sbjct: 8   TISGHNKGITALTVNP----LISGSYDGRIMEWSSSS------MHQDHSNLIVSLDNSKA 57

Query: 652 KEDLLC---SCDNNSEIRYWSINNGSCAGVFKVCNLMPIILKGCFILNSIFNCYLLLHRI 708
           +E            + I      +              ++     +L        ++  +
Sbjct: 58  QEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSV 117

Query: 709 FLNLLSVSEWCNPDEISTSSWKDSCCSH 736
            LN    +   + + ++    + +    
Sbjct: 118 RLNSPGSAVSLSQNYVAVGLEEGNTIQV 145

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.9 bits (135), Expect = 2e-09
 Identities = 12/89 (13%), Positives = 29/89 (32%), Gaps = 2/89 (2%)

Query: 582 WCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHST 641
                 +  + +                  +AT S D  + ++  + P   ++    H  
Sbjct: 200 RWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKD 259

Query: 642 TVMSLDFHPSKEDLLCSCDNNSEIRYWSI 670
            V +L +       L S   ++ I+ W++
Sbjct: 260 GVNNLLWET--PSTLVSSGADACIKRWNV 286

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.9 bits (96), Expect = 1e-04
 Identities = 13/182 (7%), Positives = 48/182 (26%), Gaps = 18/182 (9%)

Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
              + +   +P    L +G +D + + W     +  S  ++H+  I  +  S +      
Sbjct: 13  NKGITALTVNP----LISGSYDGRIMEW-----SSSSMHQDHSNLIVSLDNSKA------ 57

Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
                   +   +    +  T     +       +      + + D++  I      +  
Sbjct: 58  ---QEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDII 114

Query: 675 CAGVFKVCNLMPIILKGCFILNSIFNCYLLLHRIFLNLLSVSEWCNPDEISTSSWKDSCC 734
            +           + +    +       + + ++    +S           +        
Sbjct: 115 KSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSE 174

Query: 735 SH 736
           ++
Sbjct: 175 TY 176

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.9 bits (91), Expect = 8e-04
 Identities = 15/107 (14%), Positives = 33/107 (30%), Gaps = 8/107 (7%)

Query: 633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA---GVFKVCNLMPIIL 689
           L+T +GH+  + +L  +P     L S   +  I  WS ++        +  + N      
Sbjct: 6   LKTISGHNKGITALTVNP-----LISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEY 60

Query: 690 KGCFILNSIFNCYLLLHRIFLNLLSVSEWCNPDEISTSSWKDSCCSH 736
                 +++    +  H         S   +      ++  D     
Sbjct: 61  SSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQ 107

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 61.8 bits (148), Expect = 7e-11
 Identities = 23/192 (11%), Positives = 47/192 (24%), Gaps = 3/192 (1%)

Query: 548 FQLIPASTS-KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS 606
           F  +P +          +P G  +    +          S T      EH+   T  + S
Sbjct: 9   FPSLPRTARGTAVVLGNTPAGDKIQYC-NGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTS 67

Query: 607 PSLSRLATSSADRTVRVWDTENPDYSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNNSEI 665
           PS    A+      VR+WDT    + L+T     S  V  + +    + +    +     
Sbjct: 68  PSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERF 127

Query: 666 RYWSINNGSCAGVFKVCNLMPIILKGCFILNSIFNCYLLLHRIFLNLLSVSEWCNPDEIS 725
            +  + +   +          +                                      
Sbjct: 128 GHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGE 187

Query: 726 TSSWKDSCCSHR 737
            + +  S   + 
Sbjct: 188 HTKFVHSVRYNP 199

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 60.3 bits (144), Expect = 2e-10
 Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 1/68 (1%)

Query: 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ-WITDVRFSPSLSRLATSSADR 619
             +SPDG  +A+   DK   +W   +  V+ T+   T+     +    +   L + SA+ 
Sbjct: 244 LTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANG 303

Query: 620 TVRVWDTE 627
            +   + E
Sbjct: 304 FINFVNPE 311

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 50.3 bits (118), Expect = 4e-07
 Identities = 16/88 (18%), Positives = 34/88 (38%), Gaps = 3/88 (3%)

Query: 582 WCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS- 640
                         H+  +  + +SP  +++A++SAD+T+++W+        +T    + 
Sbjct: 223 KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKV-EKTIPVGTR 281

Query: 641 TTVMSLDFHPSKEDLLCSCDNNSEIRYW 668
                L    +K   L S   N  I + 
Sbjct: 282 IEDQQLGIIWTK-QALVSISANGFINFV 308

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 61.8 bits (148), Expect = 9e-11
 Identities = 9/87 (10%), Positives = 22/87 (25%), Gaps = 4/87 (4%)

Query: 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDV 603
            +     + +S                         + +  +       + E    +TD+
Sbjct: 265 DYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVK----TRKVTEVKNNLTDL 320

Query: 604 RFSPSLSRLATSSADRTVRVWDTENPD 630
           R S     +     D  +  +  E P+
Sbjct: 321 RLSADRKTVMVRKDDGKIYTFPLEKPE 347

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 49.1 bits (115), Expect = 1e-06
 Identities = 16/177 (9%), Positives = 42/177 (23%), Gaps = 8/177 (4%)

Query: 563 FSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD--R 619
           FSP DG L+A     +  +   + ++ +K         I  VR                 
Sbjct: 10  FSPLDGDLIAFVSRGQAFIQDVSGTYVLKVP---EPLRIRYVRRGGDTKVAFIHGTREGD 66

Query: 620 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF 679
            + ++D          F  +   V ++    + +  + + D    +              
Sbjct: 67  FLGIYDYRTG--KAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIER 124

Query: 680 KVCNLMPIILKGCFILNSIFNCYLLLHRIFLNLLSVSEWCNPDEISTSSWKDSCCSH 736
               ++             +   L        ++      + +     +        
Sbjct: 125 SREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHD 181

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.9 bits (143), Expect = 3e-10
 Identities = 22/116 (18%), Positives = 33/116 (28%), Gaps = 13/116 (11%)

Query: 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT 620
                  +L+ +G  D    LW  E                         R+ + + D  
Sbjct: 182 ACLQYRDRLVVSGSSDNTIRLWDIECGACLRV--LEGHEELVRCIRFDNKRIVSGAYDGK 239

Query: 621 VRVWDTEN--------PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW 668
           ++VWD               LRT   HS  V  L F       + S  ++  I  W
Sbjct: 240 IKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEF---QIVSSSHDDTILIW 292

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.4 bits (121), Expect = 2e-07
 Identities = 12/78 (15%), Positives = 29/78 (37%), Gaps = 3/78 (3%)

Query: 591 STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHP 650
               E ++ +  +++     ++ +   D T+++WD    +   R  TGH+ +V+ L +  
Sbjct: 9   HCRSETSKGVYCLQYDDQ--KIVSGLRDNTIKIWDKNTLE-CKRILTGHTGSVLCLQYDE 65

Query: 651 SKEDLLCSCDNNSEIRYW 668
                  S          
Sbjct: 66  RVIITGSSDSTVRVWDVN 83

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.8 bits (117), Expect = 4e-07
 Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 11/74 (14%)

Query: 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKS---------TLEEHTQWITDVRFSPSLSR 611
                D K + +G +D K  +W   +              TL EH+  +  ++F     +
Sbjct: 222 RCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEF--Q 279

Query: 612 LATSSADRTVRVWD 625
           + +SS D T+ +WD
Sbjct: 280 IVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (111), Expect = 2e-06
 Identities = 8/47 (17%), Positives = 18/47 (38%)

Query: 563 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL 609
              D + + +G  D    +W   +   K  L  HT  +  +++   +
Sbjct: 21  LQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERV 67

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (105), Expect = 2e-05
 Identities = 20/115 (17%), Positives = 40/115 (34%), Gaps = 6/115 (5%)

Query: 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT 620
                D K + +   D+   +W T +     TL  H + I  +++   L  + + S+D T
Sbjct: 142 NVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRL--VVSGSSDNT 199

Query: 621 VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC 675
           +R+WD E                  +         + S   + +I+ W +     
Sbjct: 200 IRLWDIECG----ACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALD 250

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.1 bits (141), Expect = 7e-10
 Identities = 13/104 (12%), Positives = 34/104 (32%), Gaps = 13/104 (12%)

Query: 588 TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD-----------YSLRTF 636
              +  + H   I  V    S     + S D  ++VWD +  D           +  ++ 
Sbjct: 5   ATANAGKAHDADIFSVSACNSF--TVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSG 62

Query: 637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 680
             H   + +++    +  L+ +   + ++ ++ I          
Sbjct: 63  LHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVI 106

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.2 bits (136), Expect = 3e-09
 Identities = 21/201 (10%), Positives = 58/201 (28%), Gaps = 17/201 (8%)

Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE------HTQWITDVRFSPS 608
            + + S           +   D    +W  +    ++  ++      H   +  V    +
Sbjct: 14  DADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQA 71

Query: 609 LSR-------LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN 661
           + R       +AT+S    +  +     D   +        ++  D        L    +
Sbjct: 72  IERDAFELCLVATTSFSGDLLFYRITRED-ETKKVIFEKLDLLDSDMKKHSFWALKWGAS 130

Query: 662 NSEIRYWSINNGSCAGVFKVCNLMPIILKGCFILNSIFNCYLLLHRIFLNLLSVSEWCNP 721
           N  +    +      G   +    P   +    L   ++  L L     + ++ S++   
Sbjct: 131 NDRLLSHRLVATDVKGTTYIWKFHPFADESN-SLTLNWSPTLELQGTVESPMTPSQFATS 189

Query: 722 DEISTSSWKDSCCSHRELYLY 742
            +IS      +  ++  + + 
Sbjct: 190 VDISERGLIATGFNNGTVQIS 210

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.7 bits (114), Expect = 2e-06
 Identities = 27/118 (22%), Positives = 41/118 (34%), Gaps = 21/118 (17%)

Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWI----TDVRFSPSLS 610
           +S V S  F+  G+ L + G D K   W  ++    +TL  H   I      +       
Sbjct: 289 SSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGD 348

Query: 611 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW 668
            LA         V+D +      R+  G              E L C C + S IR++
Sbjct: 349 SLAEPG------VFDVKFLKKGWRSGMGADLN----------ESLCCVCLDRS-IRWF 389

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.2 bits (105), Expect = 2e-05
 Identities = 25/144 (17%), Positives = 45/144 (31%), Gaps = 17/144 (11%)

Query: 556 SKVESCHFSPDGKLLATGGHDKKAVLWC----------------TESFTVKSTLEEHTQW 599
           + + S  FSP G LLA                            T S         H+ W
Sbjct: 232 NSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSW 291

Query: 600 ITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC 659
           +  + F+ S   L ++  D  +R WD +  +  + T   H   +   +   + ++   S 
Sbjct: 292 VMSLSFNDSGETLCSAGWDGKLRFWDVKTKE-RITTLNMHCDDIEIEEDILAVDEHGDSL 350

Query: 660 DNNSEIRYWSINNGSCAGVFKVCN 683
                     +  G  +G+    N
Sbjct: 351 AEPGVFDVKFLKKGWRSGMGADLN 374

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.3 bits (100), Expect = 9e-05
 Identities = 28/162 (17%), Positives = 53/162 (32%), Gaps = 23/162 (14%)

Query: 540 GKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVL------WCTESFTVKSTL 593
                    +     +    S   S  G L+ATG ++    +          +F  + ++
Sbjct: 169 PTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSM 227

Query: 594 EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY---------------SLRTFTG 638
             ++  I  V+FSP  S LA +    +         ++               +      
Sbjct: 228 INNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFA 287

Query: 639 HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 680
           HS+ VMSL F+ S E L  +  +   +R+W +          
Sbjct: 288 HSSWVMSLSFNDSGETLCSAGWDGK-LRFWDVKTKERITTLN 328

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 56.7 bits (135), Expect = 4e-09
 Identities = 17/117 (14%), Positives = 35/117 (29%), Gaps = 4/117 (3%)

Query: 537 AEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEH 596
           AE   G+    +Q +    +                    +  V+   ++    +  E  
Sbjct: 240 AERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE-M 298

Query: 597 TQWITDVRFSPSLSRL--ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS 651
              I  +  S     L  A S+ D+T+ + D E+ +  LR+          +     
Sbjct: 299 GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEE-LRSVNQLGHGPQVITTADM 354

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.1 bits (133), Expect = 6e-09
 Identities = 20/198 (10%), Positives = 47/198 (23%), Gaps = 15/198 (7%)

Query: 552 PAST-SKVESCHFSPDGKLLATGGHDKKAV----LWCTESFTVKSTLEEHTQWITDVRFS 606
           P++  +      + P    +A        V       ++   V       +  +T V+FS
Sbjct: 13  PSTQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFS 72

Query: 607 PSLS--RLATSSADRTVRVWDTENPDYS-------LRTFTGHSTTVMSLDFHP-SKEDLL 656
           P      L +      V VW       S          F   +  +  + +    +   +
Sbjct: 73  PIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCV 132

Query: 657 CSCDNNSEIRYWSINNGSCAGVFKVCNLMPIILKGCFILNSIFNCYLLLHRIFLNLLSVS 716
                ++   + S ++G+  G     +                        +        
Sbjct: 133 VGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPF 192

Query: 717 EWCNPDEISTSSWKDSCC 734
           ++   D            
Sbjct: 193 KFSASDRTHHKQGSFVRD 210

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.7 bits (119), Expect = 3e-07
 Identities = 11/63 (17%), Positives = 25/63 (39%), Gaps = 3/63 (4%)

Query: 610 SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTV--MSLDFHPSKEDLLCSCDNNSEIRY 667
            + AT  AD T+RVWD       ++ +T     +    +    +    + S   +  + +
Sbjct: 264 QKFATVGADATIRVWDVTTSK-CVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNF 322

Query: 668 WSI 670
           + +
Sbjct: 323 YEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.3 bits (118), Expect = 4e-07
 Identities = 11/68 (16%), Positives = 23/68 (33%), Gaps = 3/68 (4%)

Query: 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS---RLATSSA 617
                D +  AT G D    +W   +           Q + + +     +   R+ + S 
Sbjct: 257 ALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSL 316

Query: 618 DRTVRVWD 625
           D T+  ++
Sbjct: 317 DGTLNFYE 324

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.7 bits (93), Expect = 5e-04
 Identities = 23/158 (14%), Positives = 41/158 (25%), Gaps = 12/158 (7%)

Query: 530 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP--DGKLLATGGHDKKAVLWCTES- 586
           +    R  + G        Q     +S V +  FSP    + L +G    K ++W     
Sbjct: 38  KSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFD 97

Query: 587 -------FTVKSTLEEHTQWITDVRFSPSLSRLA--TSSADRTVRVWDTENPDYSLRTFT 637
                    VKS  +     I+D+ +     RL       D        ++ +       
Sbjct: 98  KESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSG 157

Query: 638 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC 675
                             +   D+ S + Y        
Sbjct: 158 HSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFS 195

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 55.9 bits (133), Expect = 7e-09
 Identities = 9/124 (7%), Positives = 29/124 (23%), Gaps = 7/124 (5%)

Query: 563 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLSRL-ATSSADRT 620
                + +    +     +    S TV  +              +P        ++    
Sbjct: 4   LKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGD 63

Query: 621 VRVWDTENPDYS-----LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC 675
           +   D +    +              ++ S    P  +++  + +    +    +     
Sbjct: 64  IYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPR 123

Query: 676 AGVF 679
             VF
Sbjct: 124 LEVF 127

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 50.5 bits (119), Expect = 3e-07
 Identities = 9/73 (12%), Positives = 20/73 (27%), Gaps = 2/73 (2%)

Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
           T    +   SP       G  ++ A  +  +   +             V F     +L  
Sbjct: 251 TELYFTGLRSPKDPNQIYGVLNRLAK-YDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYL 308

Query: 615 SSADRTVRVWDTE 627
                 + V++ +
Sbjct: 309 GGTFNDLAVFNPD 321

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 44.7 bits (104), Expect = 2e-05
 Identities = 14/122 (11%), Positives = 32/122 (26%), Gaps = 5/122 (4%)

Query: 561 CHFSPDGKLLATGGHDKKAVLWCTESFTV-KSTLEEHTQWITDVRFSPSLSRLATSSADR 619
             F  D +  AT       +    ++         + T+       SP          + 
Sbjct: 214 ARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLN- 272

Query: 620 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF 679
            +  +D +           H  T   + F     D L      +++  ++ +        
Sbjct: 273 RLAKYDLKQRKLIKAANLDH--TYYCVAFDKK-GDKLYLGGTFNDLAVFNPDTLEKVKNI 329

Query: 680 KV 681
           K+
Sbjct: 330 KL 331

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 37.8 bits (86), Expect = 0.003
 Identities = 5/37 (13%), Positives = 11/37 (29%)

Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE 594
                F   G  L  GG      ++  ++      ++
Sbjct: 294 YYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIK 330

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 49.8 bits (118), Expect = 8e-07
 Identities = 16/100 (16%), Positives = 26/100 (26%), Gaps = 7/100 (7%)

Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-----EHTQWITDVRFSPSLSRL 612
           V     S  G+ L   G D K  +         +  E     E     T           
Sbjct: 64  VHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYA 123

Query: 613 -ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS 651
            A +       + D E  +   +  +    T    ++HP 
Sbjct: 124 IAGAYWPPQYVIMDGETLEP-KKIQSTRGMTYDEQEYHPE 162

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 49.8 bits (118), Expect = 8e-07
 Identities = 13/127 (10%), Positives = 31/127 (24%), Gaps = 7/127 (5%)

Query: 563 FSPDGK--LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT 620
              D +     T     +  L    ++ +K+ L+     +   R S S   L     D  
Sbjct: 26  NDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGK 84

Query: 621 VRVWDTENPD----YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA 676
           V + D    +      ++  +   +   S       +  +       +            
Sbjct: 85  VNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPK 144

Query: 677 GVFKVCN 683
            +     
Sbjct: 145 KIQSTRG 151

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 47.1 bits (110), Expect = 5e-06
 Identities = 8/68 (11%), Positives = 14/68 (20%), Gaps = 3/68 (4%)

Query: 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT 620
              +P                +  E       +         V  S   S +    A   
Sbjct: 246 TAVNPAKTRAFG--AYNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGD 302

Query: 621 VRVWDTEN 628
           +  +D E 
Sbjct: 303 LAAYDAET 310

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 39.4 bits (90), Expect = 0.001
 Identities = 15/131 (11%), Positives = 36/131 (27%), Gaps = 6/131 (4%)

Query: 551 IPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQW-----ITDVR 604
           I  +         +P G+   AT    +  V     +      ++  T       +    
Sbjct: 29  IADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAA 88

Query: 605 FSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 664
            SP    LA   +   + +   E     +  +   + +       P +  +L    + S+
Sbjct: 89  LSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSK 148

Query: 665 IRYWSINNGSC 675
           +     +    
Sbjct: 149 LYGLGRDLHVM 159

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 38.2 bits (87), Expect = 0.002
 Identities = 11/68 (16%), Positives = 21/68 (30%), Gaps = 1/68 (1%)

Query: 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDV 603
                + +P   S   S + S DG  +  GG       +  E+   K  ++        +
Sbjct: 269 KNASIKRVPLPHS-YYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPGNASMSL 327

Query: 604 RFSPSLSR 611
                 +R
Sbjct: 328 ASVRLFTR 335

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 45.7 bits (107), Expect = 1e-05
 Identities = 20/147 (13%), Positives = 36/147 (24%), Gaps = 7/147 (4%)

Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-----EHTQWITDVRFSPSLSRL 612
           V     S  G+ L   G D +  +    +       E     E     +           
Sbjct: 64  VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYT 123

Query: 613 ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN 672
              +                 +  +    TV +  +HP  E  + +   + E   + +N 
Sbjct: 124 IAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHP--EPRVAAIIASHEHPEFIVNV 181

Query: 673 GSCAGVFKVCNLMPIILKGCFILNSIF 699
                V  V       L    I  + F
Sbjct: 182 KETGKVLLVNYKDIDNLTVTSIGAAPF 208

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 39.9 bits (92), Expect = 0.001
 Identities = 18/130 (13%), Positives = 42/130 (32%), Gaps = 22/130 (16%)

Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA---- 613
           V S     DG +   G   K        ++   + L+        ++  P  S L     
Sbjct: 267 VWSTSHLGDGSISLIGTDPKN---HPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTT 323

Query: 614 ---TSSADRTVRVWDTEN--------PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC--- 659
               +   ++V V+D +N        P          +  V+  +++   +++  S    
Sbjct: 324 FNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNG 383

Query: 660 -DNNSEIRYW 668
            +++S +   
Sbjct: 384 KNDSSALVVV 393

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 41.0 bits (94), Expect = 4e-04
 Identities = 11/70 (15%), Positives = 18/70 (25%), Gaps = 1/70 (1%)

Query: 614 TSSADRTVRVWDT-ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN 672
            S   + + VW+       +L         V  +   P K  L         +  + I  
Sbjct: 9   ASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAP 68

Query: 673 GSCAGVFKVC 682
              A  F   
Sbjct: 69  DDGALTFAAE 78

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 39.5 bits (90), Expect = 0.001
 Identities = 8/48 (16%), Positives = 16/48 (33%), Gaps = 2/48 (4%)

Query: 582 WCTESFTVKSTLEEHTQWITDVRFSPSLSRL-ATSSADRTVRVWDTEN 628
             T +  + + +         +  +P   ++    S   TV V DT  
Sbjct: 229 IDTGTNKITARIPVGP-DPAGIAVTPDGKKVYVALSFCNTVSVIDTAT 275

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	743
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.98
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.98
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.97
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.97
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.97
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.97
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.96
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.96
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.95
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.95
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.95
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.95
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.95
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.94
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.93
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.92
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.92
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.9
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.89
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.87
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.86
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.86
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.84
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.83
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.82
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.79
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.76
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.72
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.69
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.65
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.63
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.57
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.56
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.55
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.54
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.53
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.44
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.35
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.26
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.24
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.19
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.11
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.07
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.9
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.75
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.66
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.58
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.5
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.49
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.49
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.38
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.28
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.26
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.22
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	97.98
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	97.79
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	97.77
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	97.7
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	97.65
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	97.43
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	96.15
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	95.56
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	95.49
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	94.82
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	94.69
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	94.59
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	93.8
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	92.89
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	92.87
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	92.44
d1uuja_	76	Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-te	91.44
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	90.77
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	90.37
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	86.71
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	85.18
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	83.59

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=2.2e-31  Score=207.55  Aligned_cols=226  Identities=17%  Similarity=0.200  Sum_probs=185.7

Q ss_pred             CCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCC
Q ss_conf             89981189992489953323686446799789982279948998269999987743432223778401257984079999
Q 004603          478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK  557 (743)
Q Consensus       478 ~s~~~s~l~~~~d~~~~l~~s~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~  557 (743)
                      +...+.++.|+|++               +++++|+.|+.|++|+....                 .......+..|.+.
T Consensus        57 H~~~v~~~~~sp~g---------------~~latg~~dg~i~iwd~~~~-----------------~~~~~~~~~~~~~~  104 (311)
T d1nr0a1          57 HSHQTTVAKTSPSG---------------YYCASGDVHGNVRIWDTTQT-----------------THILKTTIPVFSGP  104 (311)
T ss_dssp             CSSCEEEEEECTTS---------------SEEEEEETTSEEEEEESSST-----------------TCCEEEEEECSSSC
T ss_pred             CCCCEEEEEEECCC---------------CEEECCCCCCEEEEEEEECC-----------------CCCCCCCCCCCCCC
T ss_conf             88888999994899---------------96722556736746631011-----------------11000013433575


Q ss_pred             EEEEEECCCCCEEEEEEC--CCCEEEEECCCCEEEEEECCCCCCEEEEEECCCCCE-EEEEECCCEEEEEECCCCCEEEE
Q ss_conf             689999289999999958--992999977998188997046977799999699998-99995999099998889982489
Q 004603          558 VESCHFSPDGKLLATGGH--DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSR-LATSSADRTVRVWDTENPDYSLR  634 (743)
Q Consensus       558 V~si~fspdg~~Lasgs~--Dg~V~IWDl~s~~~~~~l~~H~~~V~~vafsp~~~~-LvSgs~Dg~IriWDl~~~~~~i~  634 (743)
                      |.+++|+|++++|++++.  +..+++|++++.+.+..+.+|...|++++|+|++.+ |++|+.|+.|++||+++.. +..
T Consensus       105 v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~-~~~  183 (311)
T d1nr0a1         105 VKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFK-FKS  183 (311)
T ss_dssp             EEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBE-EEE
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCC-CCC
T ss_conf             4332333111000111122111111111111111111111111111111121110120001122111111111111-111


Q ss_pred             EEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEEC-------C----CCEEEECCCCEEEEEECCCEE
Q ss_conf             98148998589999169990999981799299998999906699962-------4----712463079999999659859
Q 004603          635 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKV-------C----NLMPIILKGCFILNSIFNCYL  703 (743)
Q Consensus       635 ~~~gh~~~V~sl~fsp~g~~lL~Sgs~Dg~IriWDl~s~~~v~~l~~-------~----~~i~~s~~g~~l~sgs~Dg~i  703 (743)
                      .+.+|...|.++.|+|++. ++++++.|+.|++||++++..+..+..       |    ..+.|++++.+|++++.|+.|
T Consensus       184 ~~~~~~~~i~~v~~~p~~~-~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v  262 (311)
T d1nr0a1         184 TFGEHTKFVHSVRYNPDGS-LFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTI  262 (311)
T ss_dssp             EECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             CCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEE
T ss_conf             1111111111123476422-121111111110001244641122211111110024653210247889999999379969


Q ss_pred             EEEECCCC---------------EEEEEECCCCCEEEEEECCCEEEEECCC
Q ss_conf             99956311---------------3898731899989999699909996799
Q 004603          704 LLHRIFLN---------------LLSVSEWCNPDEISTSSWKDSCCSHREL  739 (743)
Q Consensus       704 ~i~~~~v~---------------~l~v~~~~~~~~i~Sgs~DG~V~iWd~~  739 (743)
                      ++|+....               .+.+.+.  +..+++++.||.|++||.+
T Consensus       263 ~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~--~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         263 KIWNVATLKVEKTIPVGTRIEDQQLGIIWT--KQALVSISANGFINFVNPE  311 (311)
T ss_dssp             EEEETTTTEEEEEEECCSSGGGCEEEEEEC--SSCEEEEETTCCEEEEETT
T ss_pred             EEEECCCCCEEEEEECCCCCCCEEEEEEEC--CCEEEEEECCCEEEEEECC
T ss_conf             999999996999997999863329999951--9999999899979999588

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=2.6e-31  Score=207.07  Aligned_cols=212  Identities=14%  Similarity=0.147  Sum_probs=175.9

Q ss_pred             CEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCC
Q ss_conf             78998227994899826999998774343222377840125798407999968999928999999995899299997799
Q 004603          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES  586 (743)
Q Consensus       507 ~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~si~fspdg~~Lasgs~Dg~V~IWDl~s  586 (743)
                      +.++.+. ++.+.+|+..+.                   .....+.+|.+.|+|++|+|++++|++|+.|++|+|||+.+
T Consensus        30 ~~l~~~~-~~~v~i~~~~~~-------------------~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~   89 (311)
T d1nr0a1          30 DKIQYCN-GTSVYTVPVGSL-------------------TDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQ   89 (311)
T ss_dssp             SEEEEEE-TTEEEEEETTCS-------------------SCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSS
T ss_pred             CEEEEEE-CCEEEEEECCCC-------------------CEEEEECCCCCCEEEEEEECCCCEEECCCCCCEEEEEEEEC
T ss_conf             9999996-999999999999-------------------66179747888889999948999672255673674663101


Q ss_pred             CE--EEEEECCCCCCEEEEEECCCCCEEEEEEC--CCEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCCCEEEEEECC
Q ss_conf             81--88997046977799999699998999959--990999988899824899814899858999916999099998179
Q 004603          587 FT--VKSTLEEHTQWITDVRFSPSLSRLATSSA--DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN  662 (743)
Q Consensus       587 ~~--~~~~l~~H~~~V~~vafsp~~~~LvSgs~--Dg~IriWDl~~~~~~i~~~~gh~~~V~sl~fsp~g~~lL~Sgs~D  662 (743)
                      ..  ....+.+|...|.+++|+|++.+|++++.  +..+++|+++++.. +..+.+|...|.+++|+|++..++++|+.|
T Consensus        90 ~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~-~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d  168 (311)
T d1nr0a1          90 TTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTS-NGNLTGQARAMNSVDFKPSRPFRIISGSDD  168 (311)
T ss_dssp             TTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCB-CBCCCCCSSCEEEEEECSSSSCEEEEEETT
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCEEEECCCCCC
T ss_conf             1110000134335754332333111000111122111111111111111-111111111111111121110120001122


Q ss_pred             CCEEEEECCCCEEEEEEECCC----CEEEECCCCEEEEEECCCEEEEEECCC-------------------CEEEEEECC
Q ss_conf             929999899990669996247----124630799999996598599995631-------------------138987318
Q 004603          663 SEIRYWSINNGSCAGVFKVCN----LMPIILKGCFILNSIFNCYLLLHRIFL-------------------NLLSVSEWC  719 (743)
Q Consensus       663 g~IriWDl~s~~~v~~l~~~~----~i~~s~~g~~l~sgs~Dg~i~i~~~~v-------------------~~l~v~~~~  719 (743)
                      +.|++||++++++...+..|.    .+.++|++.++++++.|+.+.+|+...                   .+.++.+.+
T Consensus       169 ~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~  248 (311)
T d1nr0a1         169 NTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP  248 (311)
T ss_dssp             SCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECT
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             11111111111111111111111111234764221211111111100012446411222111111100246532102478


Q ss_pred             CCCEEEEEECCCEEEEECCC
Q ss_conf             99989999699909996799
Q 004603          720 NPDEISTSSWKDSCCSHREL  739 (743)
Q Consensus       720 ~~~~i~Sgs~DG~V~iWd~~  739 (743)
                      ++.++++|+.||+|++||..
T Consensus       249 ~~~~l~tgs~Dg~v~iwd~~  268 (311)
T d1nr0a1         249 DGTKIASASADKTIKIWNVA  268 (311)
T ss_dssp             TSSEEEEEETTSEEEEEETT
T ss_pred             CCCEEEEEECCCEEEEEECC
T ss_conf             89999999379969999999

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-29  Score=196.61  Aligned_cols=216  Identities=18%  Similarity=0.161  Sum_probs=172.3

Q ss_pred             CCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEEC
Q ss_conf             99789982279948998269999987743432223778401257984079999689999289999999958992999977
Q 004603          505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT  584 (743)
Q Consensus       505 ~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~si~fspdg~~Lasgs~Dg~V~IWDl  584 (743)
                      .++++++|+.|+.|++|+....                 .......+..|...|.++.|+|++.++++++.|+.|++|++
T Consensus       108 dg~~l~s~~~dg~i~iwd~~~~-----------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~  170 (337)
T d1gxra_         108 DGCTLIVGGEASTLSIWDLAAP-----------------TPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDL  170 (337)
T ss_dssp             TSSEEEEEESSSEEEEEECCCC-------------------EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             CCCEEEEEECCCCCCCCCCCCC-----------------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             9988988612332111111111-----------------11111111111111111111111111111111111111111


Q ss_pred             CCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCCCEEEEEECCCC
Q ss_conf             99818899704697779999969999899995999099998889982489981489985899991699909999817992
Q 004603          585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE  664 (743)
Q Consensus       585 ~s~~~~~~l~~H~~~V~~vafsp~~~~LvSgs~Dg~IriWDl~~~~~~i~~~~gh~~~V~sl~fsp~g~~lL~Sgs~Dg~  664 (743)
                      .+.+......+|...|++++|++++..+++++.|+.|++||++++.. +..+. |...|.+++|+|++. ++++++.|+.
T Consensus       171 ~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~-~~~~~-~~~~i~~l~~~~~~~-~l~~~~~d~~  247 (337)
T d1gxra_         171 HNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQ-LQQHD-FTSQIFSLGYCPTGE-WLAVGMESSN  247 (337)
T ss_dssp             TTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE-EEEEE-CSSCEEEEEECTTSS-EEEEEETTSC
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE-ECCCC-CCCCEEEEEECCCCC-CCCEECCCCC
T ss_conf             11111111111111111012344432112235665532111111000-00246-666157999715303-0000002564


Q ss_pred             EEEEECCCCEEEEEEECC---CCEEEECCCCEEEEEECCCEEEEEECCC-----------CEEEEEECCCCCEEEEEECC
Q ss_conf             999989999066999624---7124630799999996598599995631-----------13898731899989999699
Q 004603          665 IRYWSINNGSCAGVFKVC---NLMPIILKGCFILNSIFNCYLLLHRIFL-----------NLLSVSEWCNPDEISTSSWK  730 (743)
Q Consensus       665 IriWDl~s~~~v~~l~~~---~~i~~s~~g~~l~sgs~Dg~i~i~~~~v-----------~~l~v~~~~~~~~i~Sgs~D  730 (743)
                      |++||++.+.........   ..+.|++++.++++++.|+.|++|+...           .+.++.+.+++.+|++|+.|
T Consensus       248 i~i~d~~~~~~~~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~s~D  327 (337)
T d1gxra_         248 VEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGD  327 (337)
T ss_dssp             EEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETT
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEECCCEEEEEECCCCCEEEECCCCCCEEEEEEECCCCEEEEEECC
T ss_conf             21111111110000124565416999899999999948996999989999799992699987999992799999999089


Q ss_pred             CEEEEECCCC
Q ss_conf             9099967995
Q 004603          731 DSCCSHRELY  740 (743)
Q Consensus       731 G~V~iWd~~~  740 (743)
                      |+|++||-.|
T Consensus       328 ~~I~vWdl~~  337 (337)
T d1gxra_         328 KKATVYEVIY  337 (337)
T ss_dssp             SCEEEEEEEC
T ss_pred             CEEEEEEEEC
T ss_conf             9699997789

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.2e-29  Score=194.05  Aligned_cols=232  Identities=16%  Similarity=0.218  Sum_probs=189.4

Q ss_pred             CCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCC
Q ss_conf             78998118999248995332368644679978998227994899826999998774343222377840125798407999
Q 004603          477 NGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS  556 (743)
Q Consensus       477 ~~s~~~s~l~~~~d~~~~l~~s~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~  556 (743)
                      .....+.++.|++++               +++++|+ |+.|++|+.....              ...........+|.+
T Consensus        49 ~H~~~V~~v~fs~~g---------------~~latg~-dg~V~iWd~~~~~--------------~~~~~~~~~~~~h~~   98 (337)
T d1gxra_          49 NHGEVVCAVTISNPT---------------RHVYTGG-KGCVKVWDISHPG--------------NKSPVSQLDCLNRDN   98 (337)
T ss_dssp             CCSSCCCEEEECSSS---------------SEEEEEC-BSEEEEEETTSTT--------------CCSCSEEEECSCTTS
T ss_pred             CCCCCEEEEEECCCC---------------CEEEEEE-CCEEEEEECCCCC--------------CCCEEEEEEECCCCC
T ss_conf             999928999998999---------------9999997-9988997736776--------------331168764048899


Q ss_pred             CEEEEEECCCCCEEEEEECCCCEEEEECCC--CEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEE
Q ss_conf             968999928999999995899299997799--818899704697779999969999899995999099998889982489
Q 004603          557 KVESCHFSPDGKLLATGGHDKKAVLWCTES--FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR  634 (743)
Q Consensus       557 ~V~si~fspdg~~Lasgs~Dg~V~IWDl~s--~~~~~~l~~H~~~V~~vafsp~~~~LvSgs~Dg~IriWDl~~~~~~i~  634 (743)
                      .|.+++|+|++++|++|+.|++|++||+..  .+....+..|...|.+++|+|++.++++++.|+.|++|+++++. +..
T Consensus        99 ~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~-~~~  177 (337)
T d1gxra_          99 YIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQT-LVR  177 (337)
T ss_dssp             BEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-EEE
T ss_pred             CEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCC
T ss_conf             6899998679988988612332111111111111111111111111111111111111111111111111111111-111


Q ss_pred             EEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEECCC---CEEEECCCCEEEEEECCCEEEEEECCC-
Q ss_conf             9814899858999916999099998179929999899990669996247---124630799999996598599995631-
Q 004603          635 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCN---LMPIILKGCFILNSIFNCYLLLHRIFL-  710 (743)
Q Consensus       635 ~~~gh~~~V~sl~fsp~g~~lL~Sgs~Dg~IriWDl~s~~~v~~l~~~~---~i~~s~~g~~l~sgs~Dg~i~i~~~~v-  710 (743)
                      ...+|...|.+++|++++. .+++++.|+.|++||+++++.+..+....   .+.+++++.++++++.|+.+.+|+... 
T Consensus       178 ~~~~~~~~v~~l~~s~~~~-~~~~~~~d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~  256 (337)
T d1gxra_         178 QFQGHTDGASCIDISNDGT-KLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKP  256 (337)
T ss_dssp             EECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSS
T ss_pred             CCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCEEECCCCCCCCEEEEEECCCCCCCCEECCCCCCCCCCCCCC
T ss_conf             1111111111012344432-112235665532111111000002466661579997153030000002564211111111


Q ss_pred             ----------CEEEEEECCCCCEEEEEECCCEEEEECCCC
Q ss_conf             ----------138987318999899996999099967995
Q 004603          711 ----------NLLSVSEWCNPDEISTSSWKDSCCSHRELY  740 (743)
Q Consensus       711 ----------~~l~v~~~~~~~~i~Sgs~DG~V~iWd~~~  740 (743)
                                .+..+.+.+++.++++++.||.|++||...
T Consensus       257 ~~~~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~  296 (337)
T d1gxra_         257 DKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPY  296 (337)
T ss_dssp             CEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             CCCCCCCCCCCCCEEEECCCCCEEEEEECCCEEEEEECCC
T ss_conf             1000012456541699989999999994899699998999

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3.7e-29  Score=193.68  Aligned_cols=226  Identities=17%  Similarity=0.299  Sum_probs=184.6

Q ss_pred             CCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCC
Q ss_conf             47899811899924899533236864467997899822799489982699999877434322237784012579840799
Q 004603          476 HNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST  555 (743)
Q Consensus       476 ~~~s~~~s~l~~~~d~~~~l~~s~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~  555 (743)
                      ..+...+.++.|++++               .++++|+.|+.|++|+...+                   ..+..+..|.
T Consensus        52 ~GH~~~I~~l~~s~~~---------------~~l~sgs~Dg~v~iWd~~~~-------------------~~~~~~~~~~   97 (340)
T d1tbga_          52 RGHLAKIYAMHWGTDS---------------RLLVSASQDGKLIIWDSYTT-------------------NKVHAIPLRS   97 (340)
T ss_dssp             CCCSSCEEEEEECTTS---------------SEEEEEETTTEEEEEETTTT-------------------EEEEEEECSC
T ss_pred             CCCCCCEEEEEECCCC---------------CEEEEEECCCCEEEEECCCC-------------------EEEEEEECCC
T ss_conf             8878988899998999---------------99999978995556310210-------------------2579972465


Q ss_pred             CCEEEEEECCCCCEEEEEECCCCEEEEECCCCE----EEEEE--------------------------------------
Q ss_conf             996899992899999999589929999779981----88997--------------------------------------
Q 004603          556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFT----VKSTL--------------------------------------  593 (743)
Q Consensus       556 ~~V~si~fspdg~~Lasgs~Dg~V~IWDl~s~~----~~~~l--------------------------------------  593 (743)
                      ..|.+++|+|++.++++|+.|+.+++|+.....    ....+                                      
T Consensus        98 ~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (340)
T d1tbga_          98 SWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQT  177 (340)
T ss_dssp             SCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEE
T ss_pred             CCEEEEEEECCCEEEEEECCCCEEECCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             33775676012114431013320101332222122211100135421101111111111111124454320012322111


Q ss_pred             ---CCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEEC
Q ss_conf             ---04697779999969999899995999099998889982489981489985899991699909999817992999989
Q 004603          594 ---EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI  670 (743)
Q Consensus       594 ---~~H~~~V~~vafsp~~~~LvSgs~Dg~IriWDl~~~~~~i~~~~gh~~~V~sl~fsp~g~~lL~Sgs~Dg~IriWDl  670 (743)
                         ..+...+.+..+.+...++++++.|+.|++||++++. ++.++.+|...|++++|+|++. ++++++.|+.|++||+
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~-~~~~~~~h~~~i~~v~~~p~~~-~l~s~s~d~~i~~~~~  255 (340)
T d1tbga_         178 TTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGM-CRQTFTGHESDINAICFFPNGN-AFATGSDDATCRLFDL  255 (340)
T ss_dssp             EEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTE-EEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEET
T ss_pred             CCCCCCCEEEEEECCCCCCCEEEEEECCCEEEEEECCCCC-EEEEEECCCCCEEEEEECCCCC-EEEEEECCCEEEEEEE
T ss_conf             1123310157630012442126876057369999999994-8899957889858999979989-9999969996999752


Q ss_pred             CCCEEEEEEECC------CCEEEECCCCEEEEEECCCEEEEEECCC------------CEEEEEECCCCCEEEEEECCCE
Q ss_conf             999066999624------7124630799999996598599995631------------1389873189998999969990
Q 004603          671 NNGSCAGVFKVC------NLMPIILKGCFILNSIFNCYLLLHRIFL------------NLLSVSEWCNPDEISTSSWKDS  732 (743)
Q Consensus       671 ~s~~~v~~l~~~------~~i~~s~~g~~l~sgs~Dg~i~i~~~~v------------~~l~v~~~~~~~~i~Sgs~DG~  732 (743)
                      +....+..+...      ..+.+++++.++++++.|+.|++|+...            .+.++.+.+++.++++|+.||.
T Consensus       256 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~  335 (340)
T d1tbga_         256 RADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSF  335 (340)
T ss_dssp             TTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSC
T ss_pred             CCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEEEECCCCE
T ss_conf             12211111112244574589999899999999979798999999999398998489997899999089999999906997


Q ss_pred             EEEEC
Q ss_conf             99967
Q 004603          733 CCSHR  737 (743)
Q Consensus       733 V~iWd  737 (743)
                      |++||
T Consensus       336 v~iWd  340 (340)
T d1tbga_         336 LKIWN  340 (340)
T ss_dssp             EEEEC
T ss_pred             EEEEC
T ss_conf             99859

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.1e-29  Score=195.24  Aligned_cols=176  Identities=12%  Similarity=0.110  Sum_probs=108.9

Q ss_pred             CCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECC
Q ss_conf             97899822799489982699999877434322237784012579840799996899992899999999589929999779
Q 004603          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE  585 (743)
Q Consensus       506 ~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~si~fspdg~~Lasgs~Dg~V~IWDl~  585 (743)
                      ++++++++.|+.|++|+..                 .........+.+|...|++++|+|+++.|++|+.|++|++|+++
T Consensus        63 ~~~l~s~s~D~~i~vWd~~-----------------~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~  125 (371)
T d1k8kc_          63 SNRIVTCGTDRNAYVWTLK-----------------GRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFE  125 (371)
T ss_dssp             TTEEEEEETTSCEEEEEEE-----------------TTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEE
T ss_pred             CCEEEEEECCCEEEEEEEC-----------------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEE
T ss_conf             9999999799939998620-----------------33211001223221100011111112110000025763025442


Q ss_pred             CCE----EEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCC-----------------EEEEEEECCCCCEE
Q ss_conf             981----889970469777999996999989999599909999888998-----------------24899814899858
Q 004603          586 SFT----VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD-----------------YSLRTFTGHSTTVM  644 (743)
Q Consensus       586 s~~----~~~~l~~H~~~V~~vafsp~~~~LvSgs~Dg~IriWDl~~~~-----------------~~i~~~~gh~~~V~  644 (743)
                      ...    .......|...|++++|+|++.+|++++.|++|++||+....                 ..+....+|...|.
T Consensus       126 ~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  205 (371)
T d1k8kc_         126 QENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVH  205 (371)
T ss_dssp             TTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEE
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEE
T ss_conf             03343311100101112221111111111100013476799984015764310012211111111011244047667478


Q ss_pred             EEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEECCC----CEEEECCCCEEEEEEC
Q ss_conf             999916999099998179929999899990669996247----1246307999999965
Q 004603          645 SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCN----LMPIILKGCFILNSIF  699 (743)
Q Consensus       645 sl~fsp~g~~lL~Sgs~Dg~IriWDl~s~~~v~~l~~~~----~i~~s~~g~~l~sgs~  699 (743)
                      +++|+|++. ++++++.|+.|++||+..+.++..+..+.    .+.|++++.++++|+.
T Consensus       206 ~~~~s~~g~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d~~~la~g~d  263 (371)
T d1k8kc_         206 GVCFSANGS-RVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHD  263 (371)
T ss_dssp             EEEECSSSS-EEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEETT
T ss_pred             EEEEECCCC-CCCCCCCCCCCEEEEEECCCCEEEEECCCCCCEEEEECCCCCEEEEECC
T ss_conf             987512332-1000014786058864101210000014665203654699979999819

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.2e-28  Score=190.51  Aligned_cols=245  Identities=18%  Similarity=0.224  Sum_probs=197.5

Q ss_pred             CCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCC------CCCC-C------------
Q ss_conf             78998118999248995332368644679978998227994899826999998774------3432-2------------
Q 004603          477 NGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDR------VGRS-A------------  537 (743)
Q Consensus       477 ~~s~~~s~l~~~~d~~~~l~~s~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~------~~~~-~------------  537 (743)
                      .+...+.++.|++++               +++++|+.|++|++|+...+......      +..+ +            
T Consensus        15 GH~~~I~~l~~sp~~---------------~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~   79 (317)
T d1vyhc1          15 GHRSPVTRVIFHPVF---------------SVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSA   79 (317)
T ss_dssp             CCSSCEEEEEECSSS---------------SEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             CCCCCEEEEEECCCC---------------CEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCC
T ss_conf             888876899993898---------------99999938992999989999799999578886777763011110111111


Q ss_pred             ----CCCCCCEEEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEE
Q ss_conf             ----2377840125798407999968999928999999995899299997799818899704697779999969999899
Q 004603          538 ----EVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA  613 (743)
Q Consensus       538 ----~~~~~~~~~~~~~l~~H~~~V~si~fspdg~~Lasgs~Dg~V~IWDl~s~~~~~~l~~H~~~V~~vafsp~~~~Lv  613 (743)
                          .............+.+|...+.++.|++++..+++++.|+.+++||+++++.+..+.+|...+.+++|++++.+|+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  159 (317)
T d1vyhc1          80 DMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIA  159 (317)
T ss_dssp             TSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEE
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEECCCCCEEEEECCCCEEEEEECCCCCCCEEEECCCCCCEEE
T ss_conf             11101110011111111000000000000169985577652675235751144303468716777630000166799999


Q ss_pred             EEECCCEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCC-------------------CEEEEEECCCCEEEEECCCCE
Q ss_conf             9959990999988899824899814899858999916999-------------------099998179929999899990
Q 004603          614 TSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE-------------------DLLCSCDNNSEIRYWSINNGS  674 (743)
Q Consensus       614 Sgs~Dg~IriWDl~~~~~~i~~~~gh~~~V~sl~fsp~g~-------------------~lL~Sgs~Dg~IriWDl~s~~  674 (743)
                      +++.|+.|++|++.+... +..+.+|...+.++.|+|+..                   .++++++.|+.|++||+++++
T Consensus       160 ~~~~d~~v~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  238 (317)
T d1vyhc1         160 SCSNDQTVRVWVVATKEC-KAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM  238 (317)
T ss_dssp             EEETTSCEEEEETTTCCE-EEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTE
T ss_pred             EEECCCEEEEEEECCCEE-EEEEECCCCCCEEEEEEECCCCCEEECCCCCEEEEECCCCCEEEECCCCCEEEEEECCCCC
T ss_conf             992798299975125403-4788247787337998632564111034563034302588614751699789998889996


Q ss_pred             EEEEEECCCC----EEEECCCCEEEEEECCCEEEEEECCC------------CEEEEEECCCCCEEEEEECCCEEEEEC
Q ss_conf             6699962471----24630799999996598599995631------------138987318999899996999099967
Q 004603          675 CAGVFKVCNL----MPIILKGCFILNSIFNCYLLLHRIFL------------NLLSVSEWCNPDEISTSSWKDSCCSHR  737 (743)
Q Consensus       675 ~v~~l~~~~~----i~~s~~g~~l~sgs~Dg~i~i~~~~v------------~~l~v~~~~~~~~i~Sgs~DG~V~iWd  737 (743)
                      ++..+.+|..    +.+++++.+|++++.|+.|++|+...            .+.++.+.++...|++|+.||+|++||
T Consensus       239 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         239 CLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             EEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             EEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEC
T ss_conf             8899968899879999879999999997989499999999919999928999889999949999999992899499829

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=7.1e-29  Score=191.95  Aligned_cols=233  Identities=12%  Similarity=0.095  Sum_probs=181.6

Q ss_pred             CCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCE
Q ss_conf             99811899924899533236864467997899822799489982699999877434322237784012579840799996
Q 004603          479 ASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKV  558 (743)
Q Consensus       479 s~~~s~l~~~~d~~~~l~~s~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V  558 (743)
                      ...+.++.|+|+.             .+.++++|+.|++|++|+...+..           ...........+..|.+.|
T Consensus        63 ~~~v~~v~fsP~~-------------~g~~lasgs~Dg~i~iWd~~~~~~-----------~~~~~~~~~~~~~~~~~~v  118 (325)
T d1pgua1          63 SSVVTTVKFSPIK-------------GSQYLCSGDESGKVIVWGWTFDKE-----------SNSVEVNVKSEFQVLAGPI  118 (325)
T ss_dssp             TSCEEEEEECSST-------------TCCEEEEEETTSEEEEEEEEEEGG-----------GTEEEEEEEEEEECCSSCE
T ss_pred             CCCEEEEEEEECC-------------CCCEEEEEECCCCEEEEEECCCCC-----------EEEEECCCCCCCCCCCCCE
T ss_conf             9988999981179-------------997999994899779854058862-----------1565100254113656737


Q ss_pred             EEEEECCCCCEEEEEEC--CCCEEEEECCCCEEEEEECCCCCCEEEEEECCCCCE-EEEEECCCEEEEEECCCCCEEEEE
Q ss_conf             89999289999999958--992999977998188997046977799999699998-999959990999988899824899
Q 004603          559 ESCHFSPDGKLLATGGH--DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSR-LATSSADRTVRVWDTENPDYSLRT  635 (743)
Q Consensus       559 ~si~fspdg~~Lasgs~--Dg~V~IWDl~s~~~~~~l~~H~~~V~~vafsp~~~~-LvSgs~Dg~IriWDl~~~~~~i~~  635 (743)
                      .+++|+++++++++++.  ++.+++|+.++++.+..+.+|...|.+++|+|++.. +++++.|+.|++||+..... ...
T Consensus       119 ~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~-~~~  197 (325)
T d1pgua1         119 SDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKF-SAS  197 (325)
T ss_dssp             EEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEE-EEE
T ss_pred             EEEEECCCCCCCCEEECCCCCEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCC-CEE
T ss_conf             7999899988220100124404788850233110012001234321111234320688862111221111221100-000


Q ss_pred             ---EECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEECCCC----EEEE---CCCCEEEEEECCCEEEE
Q ss_conf             ---8148998589999169990999981799299998999906699962471----2463---07999999965985999
Q 004603          636 ---FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNL----MPII---LKGCFILNSIFNCYLLL  705 (743)
Q Consensus       636 ---~~gh~~~V~sl~fsp~g~~lL~Sgs~Dg~IriWDl~s~~~v~~l~~~~~----i~~s---~~g~~l~sgs~Dg~i~i  705 (743)
                         +.+|...|.+++|+|++..++++++.|+.|++||+++++++.++.+|..    +.++   +++.+|++++.|+.|++
T Consensus       198 ~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~i  277 (325)
T d1pgua1         198 DRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRV  277 (325)
T ss_dssp             ECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEE
T ss_pred             CCCCCCCCCCCEEEEECCCCCEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEECCCEEEE
T ss_conf             00015777752776303453100001123321013430012221111111111111000000368999999958993999


Q ss_pred             EECCCC----------------EEEEEECCCCCEEEEEECCCEEEEEC
Q ss_conf             956311----------------38987318999899996999099967
Q 004603          706 HRIFLN----------------LLSVSEWCNPDEISTSSWKDSCCSHR  737 (743)
Q Consensus       706 ~~~~v~----------------~l~v~~~~~~~~i~Sgs~DG~V~iWd  737 (743)
                      |+....                .+.+.+.. ...+++++.||.|++||
T Consensus       278 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~s~s~dg~i~vwd  324 (325)
T d1pgua1         278 WDVTTSKCVQKWTLDKQQLGNQQVGVVATG-NGRIISLSLDGTLNFYE  324 (325)
T ss_dssp             EETTTTEEEEEEECCTTCGGGCEEEEEEEE-TTEEEEEETTSCEEEEE
T ss_pred             EECCCCCEEEEEEECCCCCCCEEEEEEECC-CCEEEEEECCCEEEEEE
T ss_conf             999999788999954874067699999889-99999997999999997

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.98  E-value=1.7e-28  Score=189.51  Aligned_cols=242  Identities=23%  Similarity=0.295  Sum_probs=151.6

Q ss_pred             CCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCC
Q ss_conf             89981189992489953323686446799789982279948998269999987743432223778401257984079999
Q 004603          478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK  557 (743)
Q Consensus       478 ~s~~~s~l~~~~d~~~~l~~s~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~  557 (743)
                      +...+.++.|++|+               +++++|+ |+.|++|+..++........... ...............|...
T Consensus        61 H~~~V~~l~fs~dg---------------~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  123 (388)
T d1erja_          61 HTSVVCCVKFSNDG---------------EYLATGC-NKTTQVYRVSDGSLVARLSDDSA-ANKDPENLNTSSSPSSDLY  123 (388)
T ss_dssp             CSSCCCEEEECTTS---------------SEEEEEC-BSCEEEEETTTCCEEEEECC------------------CCCCB
T ss_pred             CCCCEEEEEECCCC---------------CEEEEEE-CCEEEEEEECCCCEEEEECCCCC-CCCCCCCCCCCCCCCCCCC
T ss_conf             99968999999999---------------9999994-99489998136405766316654-4324432111014677898


Q ss_pred             EEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCC---------
Q ss_conf             68999928999999995899299997799818899704697779999969999899995999099998889---------
Q 004603          558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN---------  628 (743)
Q Consensus       558 V~si~fspdg~~Lasgs~Dg~V~IWDl~s~~~~~~l~~H~~~V~~vafsp~~~~LvSgs~Dg~IriWDl~~---------  628 (743)
                      |++++|+|++++|++|+.|+.|++||...++.+..+.+|...|.+++|++++..+++++.++.|++||.++         
T Consensus       124 V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~  203 (388)
T d1erja_         124 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSI  203 (388)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred             EEEEEECCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCC
T ss_conf             89999889998012134441111211111111111111111111101111111111222101565410111111000012


Q ss_pred             ---------------------------------CCEEEE-------EEECCCCCEEEEEEECCCCCEEEEEECCCCEEEE
Q ss_conf             ---------------------------------982489-------9814899858999916999099998179929999
Q 004603          629 ---------------------------------PDYSLR-------TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW  668 (743)
Q Consensus       629 ---------------------------------~~~~i~-------~~~gh~~~V~sl~fsp~g~~lL~Sgs~Dg~IriW  668 (743)
                                                       +.. +.       ...+|...|.+++|+|++. ++++++.|+.|++|
T Consensus       204 ~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~-~~~~~~~~~~~~~h~~~v~~l~~s~~~~-~l~s~~~d~~i~iw  281 (388)
T d1erja_         204 EDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFL-VERLDSENESGTGHKDSVYSVVFTRDGQ-SVVSGSLDRSVKLW  281 (388)
T ss_dssp             SSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCE-EEEEC------CCCSSCEEEEEECTTSS-EEEEEETTSEEEEE
T ss_pred             CCCCCCCCCCCCCCCEEEEECCCCEEEEEECCCCCC-CEEECCCCCCCCCCCCCEEEEEECCCCC-EEEEEECCCCEEEE
T ss_conf             454421123688787589973898199963455730-0010244333457789878999979999-99999789928987


Q ss_pred             ECCCCEEEE------------EEECC----CCEEEECCCCEEEEEECCCEEEEEECCCCE------------EEEE----
Q ss_conf             899990669------------99624----712463079999999659859999563113------------8987----
Q 004603          669 SINNGSCAG------------VFKVC----NLMPIILKGCFILNSIFNCYLLLHRIFLNL------------LSVS----  716 (743)
Q Consensus       669 Dl~s~~~v~------------~l~~~----~~i~~s~~g~~l~sgs~Dg~i~i~~~~v~~------------l~v~----  716 (743)
                      |++.+....            ....|    ..+.+++++.+|++++.|+.|++|+.....            ..+.    
T Consensus       282 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~  361 (388)
T d1erja_         282 NLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANG  361 (388)
T ss_dssp             EC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSS
T ss_pred             ECCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECC
T ss_conf             51577643210134442001101245532789998899999999969897999999999699999688997899998467


Q ss_pred             --ECCCCCEEEEEECCCEEEEECC
Q ss_conf             --3189998999969990999679
Q 004603          717 --EWCNPDEISTSSWKDSCCSHRE  738 (743)
Q Consensus       717 --~~~~~~~i~Sgs~DG~V~iWd~  738 (743)
                        +.++..++++|+.||+|++||-
T Consensus       362 ~~~spd~~~l~s~s~Dg~I~iW~~  385 (388)
T d1erja_         362 SSLGPEYNVFATGSGDCKARIWKY  385 (388)
T ss_dssp             CTTCTTCEEEEEEETTSEEEEEEE
T ss_pred             CCCCCCCCEEEEEECCCEEEEEEE
T ss_conf             425899999999918997999762

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.98  E-value=1.3e-28  Score=190.35  Aligned_cols=224  Identities=16%  Similarity=0.164  Sum_probs=174.3

Q ss_pred             CCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCEE
Q ss_conf             98118999248995332368644679978998227994899826999998774343222377840125798407999968
Q 004603          480 SSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVE  559 (743)
Q Consensus       480 ~~~s~l~~~~d~~~~l~~s~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~  559 (743)
                      .+++++.|++|+               +++++|+.|+.|++|+.                 .+.....+..+++|.+.|+
T Consensus         8 ~pIt~~~~s~dg---------------~~la~~~~~~~i~iw~~-----------------~~~~~~~~~~l~gH~~~V~   55 (371)
T d1k8kc_           8 EPISCHAWNKDR---------------TQIAICPNNHEVHIYEK-----------------SGNKWVQVHELKEHNGQVT   55 (371)
T ss_dssp             SCCCEEEECTTS---------------SEEEEECSSSEEEEEEE-----------------ETTEEEEEEEEECCSSCEE
T ss_pred             CCEEEEEECCCC---------------CEEEEEECCCEEEEEEC-----------------CCCCEEEEEEECCCCCCEE
T ss_conf             883899998999---------------99999948898999988-----------------8997899999558899888


Q ss_pred             EEEECCCCCEEEEEECCCCEEEEECCCCEE--EEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCE---EEE
Q ss_conf             999928999999995899299997799818--899704697779999969999899995999099998889982---489
Q 004603          560 SCHFSPDGKLLATGGHDKKAVLWCTESFTV--KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY---SLR  634 (743)
Q Consensus       560 si~fspdg~~Lasgs~Dg~V~IWDl~s~~~--~~~l~~H~~~V~~vafsp~~~~LvSgs~Dg~IriWDl~~~~~---~i~  634 (743)
                      +++|+|++++|++|+.|++|+|||+.+...  ...+.+|...|++++|+|++..|++++.|++|++|++.....   ...
T Consensus        56 ~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~  135 (371)
T d1k8kc_          56 GVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKH  135 (371)
T ss_dssp             EEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEE
T ss_pred             EEEECCCCCEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEECCCCCCCCCC
T ss_conf             99997999999999799939998620332110012232211000111111121100000257630254420334331110


Q ss_pred             EEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCE------------------EEEEEECC----CCEEEECCCC
Q ss_conf             9814899858999916999099998179929999899990------------------66999624----7124630799
Q 004603          635 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS------------------CAGVFKVC----NLMPIILKGC  692 (743)
Q Consensus       635 ~~~gh~~~V~sl~fsp~g~~lL~Sgs~Dg~IriWDl~s~~------------------~v~~l~~~----~~i~~s~~g~  692 (743)
                      ...+|...|.+++|+|++. ++++++.|+.|++|++....                  .+.....+    ..++|++++.
T Consensus       136 ~~~~~~~~v~~v~~~p~~~-~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~  214 (371)
T d1k8kc_         136 IKKPIRSTVLSLDWHPNSV-LLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGS  214 (371)
T ss_dssp             ECTTCCSCEEEEEECTTSS-EEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSS
T ss_pred             CCCCCCCCCCCCCCCCCCC-CEECCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEEECCCC
T ss_conf             0101112221111111111-100013476799984015764310012211111111011244047667478987512332


Q ss_pred             EEEEEECCCEEEEEECCC------------CEEEEEECCCCCEEEEEECCCEEEEEC
Q ss_conf             999996598599995631------------138987318999899996999099967
Q 004603          693 FILNSIFNCYLLLHRIFL------------NLLSVSEWCNPDEISTSSWKDSCCSHR  737 (743)
Q Consensus       693 ~l~sgs~Dg~i~i~~~~v------------~~l~v~~~~~~~~i~Sgs~DG~V~iWd  737 (743)
                      ++++++.|+.+.+|+...            .+..+.+.. .+.+++++.|+.+++|.
T Consensus       215 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~-d~~~la~g~d~~~~~~~  270 (371)
T d1k8kc_         215 RVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFIT-ESSLVAAGHDCFPVLFT  270 (371)
T ss_dssp             EEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEE-TTEEEEEETTSSCEEEE
T ss_pred             CCCCCCCCCCCEEEEEECCCCEEEEECCCCCCEEEEECC-CCCEEEEECCCCEEEEE
T ss_conf             100001478605886410121000001466520365469-99799998199267877

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.97  E-value=8.6e-27  Score=179.03  Aligned_cols=233  Identities=19%  Similarity=0.244  Sum_probs=177.3

Q ss_pred             CCCCCCCCCCEEEEEECCCCCCC---C-----CCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCC-------
Q ss_conf             43347899811899924899533---2-----36864467997899822799489982699999877434322-------
Q 004603          473 TLQHNGASSKSLLMFGSDGMGSL---T-----SAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSA-------  537 (743)
Q Consensus       473 ~l~~~~s~~~s~l~~~~d~~~~l---~-----~s~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~-------  537 (743)
                      .+...++.+..+.+|+......+   .     .....+.+.+.++++|+.|+.+.+|..............+.       
T Consensus        68 ~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (340)
T d1tbga_          68 RLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLS  147 (340)
T ss_dssp             SEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEE
T ss_pred             CEEEEEECCCCEEEEECCCCEEEEEEECCCCCEEEEEEECCCEEEEEECCCCEEECCCCCCCCCCCCCCEECCCCCCCCC
T ss_conf             99999978995556310210257997246533775676012114431013320101332222122211100135421101


Q ss_pred             -------------------CCCCCCEEEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCC
Q ss_conf             -------------------2377840125798407999968999928999999995899299997799818899704697
Q 004603          538 -------------------EVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ  598 (743)
Q Consensus       538 -------------------~~~~~~~~~~~~~l~~H~~~V~si~fspdg~~Lasgs~Dg~V~IWDl~s~~~~~~l~~H~~  598 (743)
                                         ................+...+.++.+.+...++++|+.|+.|++||+++++++.++.+|..
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~  227 (340)
T d1tbga_         148 CCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES  227 (340)
T ss_dssp             EEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSS
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCC
T ss_conf             11111111111112445432001232211111233101576300124421268760573699999999948899957889


Q ss_pred             CEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEE--ECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCEEE
Q ss_conf             77999996999989999599909999888998248998--1489985899991699909999817992999989999066
Q 004603          599 WITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF--TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA  676 (743)
Q Consensus       599 ~V~~vafsp~~~~LvSgs~Dg~IriWDl~~~~~~i~~~--~gh~~~V~sl~fsp~g~~lL~Sgs~Dg~IriWDl~s~~~v  676 (743)
                      .|++++|+|++.+|++++.|+.|++||++.... +..+  ..+...|.+++|+|++. ++++++.|+.|++||+.+++++
T Consensus       228 ~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~-~~~~~~~~~~~~i~~~~~s~~~~-~l~~g~~dg~i~iwd~~~~~~~  305 (340)
T d1tbga_         228 DINAICFFPNGNAFATGSDDATCRLFDLRADQE-LMTYSHDNIICGITSVSFSKSGR-LLLAGYDDFNCNVWDALKADRA  305 (340)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTTEE-EEEECCTTCCSCEEEEEECSSSC-EEEEEETTSCEEEEETTTCCEE
T ss_pred             CEEEEEECCCCCEEEEEECCCEEEEEEECCCCC-CCCCCCCCCCCCEEEEEECCCCC-EEEEEECCCEEEEEECCCCCEE
T ss_conf             858999979989999996999699975212211-11111224457458999989999-9999979798999999999398


Q ss_pred             EEEECCCC----EEEECCCCEEEEEECCCEEEEEE
Q ss_conf             99962471----24630799999996598599995
Q 004603          677 GVFKVCNL----MPIILKGCFILNSIFNCYLLLHR  707 (743)
Q Consensus       677 ~~l~~~~~----i~~s~~g~~l~sgs~Dg~i~i~~  707 (743)
                      .++.+|..    +.|++++.+|++++.|+.|++|+
T Consensus       306 ~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         306 GVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EEECCCCCCEEEEEEECCCCEEEEECCCCEEEEEC
T ss_conf             99848999789999908999999990699799859

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.1e-26  Score=178.40  Aligned_cols=159  Identities=19%  Similarity=0.322  Sum_probs=131.0

Q ss_pred             EEEECCCCCEEEEEECC-CCCEEEEEECCCCEEEEECCCCEEEEEE-------CCCCCCEEEEEECCCCCEEEEEECCCE
Q ss_conf             98407999968999928-9999999958992999977998188997-------046977799999699998999959990
Q 004603          549 QLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTL-------EEHTQWITDVRFSPSLSRLATSSADRT  620 (743)
Q Consensus       549 ~~l~~H~~~V~si~fsp-dg~~Lasgs~Dg~V~IWDl~s~~~~~~l-------~~H~~~V~~vafsp~~~~LvSgs~Dg~  620 (743)
                      .....+ ..+.++.+.+ ++.+|++|+.|+.|++|++.++.....+       .+|...|++++|+|++.+|++++.|+.
T Consensus       199 ~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~  277 (388)
T d1erja_         199 LTLSIE-DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRS  277 (388)
T ss_dssp             EEEECS-SCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             CCCCCC-CCCCCCCCCCCCCCEEEEECCCCEEEEEECCCCCCCEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCC
T ss_conf             000124-5442112368878758997389819996345573000102443334577898789999799999999978992


Q ss_pred             EEEEECCCCC-----------EEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEECCCC-----
Q ss_conf             9999888998-----------248998148998589999169990999981799299998999906699962471-----
Q 004603          621 VRVWDTENPD-----------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNL-----  684 (743)
Q Consensus       621 IriWDl~~~~-----------~~i~~~~gh~~~V~sl~fsp~g~~lL~Sgs~Dg~IriWDl~s~~~v~~l~~~~~-----  684 (743)
                      |++||++...           .+......|...|.+++|+|++. +|++++.|+.|++||+++++++.++++|..     
T Consensus       278 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~  356 (388)
T d1erja_         278 VKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDE-YILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISV  356 (388)
T ss_dssp             EEEEEC---------------CEEEEEECCSSCEEEEEECGGGC-EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred             EEEEECCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEECCCCC-EEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEE
T ss_conf             89875157764321013444200110124553278999889999-99999698979999999996999996889978999


Q ss_pred             -----EEEECCCCEEEEEECCCEEEEEECC
Q ss_conf             -----2463079999999659859999563
Q 004603          685 -----MPIILKGCFILNSIFNCYLLLHRIF  709 (743)
Q Consensus       685 -----i~~s~~g~~l~sgs~Dg~i~i~~~~  709 (743)
                           ..+++++.+|++++.|++|++|+..
T Consensus       357 ~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         357 AVANGSSLGPEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             EECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             EEECCCCCCCCCCEEEEEECCCEEEEEEEE
T ss_conf             984674258999999999189979997621

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.97  E-value=6.7e-27  Score=179.69  Aligned_cols=229  Identities=11%  Similarity=0.121  Sum_probs=161.7

Q ss_pred             CCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEE-E
Q ss_conf             334789981189992489953323686446799789982279948998269999987743432223778401257984-0
Q 004603          474 LQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLI-P  552 (743)
Q Consensus       474 l~~~~s~~~s~l~~~~d~~~~l~~s~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~  552 (743)
                      +...+...+.++.|++|+               +++++|+.|+.|++|+...+                   .....+ .
T Consensus         7 ~~~GH~~~V~~l~~s~dg---------------~~l~s~s~Dg~v~vWd~~~~-------------------~~~~~~~~   52 (299)
T d1nr0a2           7 VRYGHNKAITALSSSADG---------------KTLFSADAEGHINSWDISTG-------------------ISNRVFPD   52 (299)
T ss_dssp             EECCCSSCEEEEEECTTS---------------SEEEEEETTSCEEEEETTTC-------------------CEEECSSC
T ss_pred             ECCCCCCCCEEEEECCCC---------------CEEEEECCCCEEEEEECCCC-------------------CEEEEECC
T ss_conf             848888782899997999---------------99999908992999999999-------------------68899837


Q ss_pred             CCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCC------------------------------------------EEE
Q ss_conf             79999689999289999999958992999977998------------------------------------------188
Q 004603          553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF------------------------------------------TVK  590 (743)
Q Consensus       553 ~H~~~V~si~fspdg~~Lasgs~Dg~V~IWDl~s~------------------------------------------~~~  590 (743)
                      +|...|++++|+|++.++ +++.|+.+++|+....                                          +..
T Consensus        53 ~h~~~v~~v~~~~~g~~~-~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~  131 (299)
T d1nr0a2          53 VHATMITGIKTTSKGDLF-TVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLT  131 (299)
T ss_dssp             SCSSCEEEEEECTTSCEE-EEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEE
T ss_pred             CCCCCEEEEEEECCCEEE-CCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             887748998840331121-0231026887316776201110001111344321001122111112222222111111111


Q ss_pred             EEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEEC
Q ss_conf             99704697779999969999899995999099998889982489981489985899991699909999817992999989
Q 004603          591 STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI  670 (743)
Q Consensus       591 ~~l~~H~~~V~~vafsp~~~~LvSgs~Dg~IriWDl~~~~~~i~~~~gh~~~V~sl~fsp~g~~lL~Sgs~Dg~IriWDl  670 (743)
                      ..  .....+.+++|+|++.+|++++.|+.|++||+++..........|...|.+++|+|++. ++++++.|+.|++||+
T Consensus       132 ~~--~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~~~~~  208 (299)
T d1nr0a2         132 EV--PISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGA-FLVATDQSRKVIPYSV  208 (299)
T ss_dssp             EE--ECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSS-EEEEEETTSCEEEEEG
T ss_pred             CC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCC
T ss_conf             10--11112332211111111111111111111111111111111111111111111111111-1111111111111111


Q ss_pred             CCCEEEEE---EECC----CCEEEECCCCEEEEEECCCEEEEEECCC--------------CEEEEEECCCCCEEEEEEC
Q ss_conf             99906699---9624----7124630799999996598599995631--------------1389873189998999969
Q 004603          671 NNGSCAGV---FKVC----NLMPIILKGCFILNSIFNCYLLLHRIFL--------------NLLSVSEWCNPDEISTSSW  729 (743)
Q Consensus       671 ~s~~~v~~---l~~~----~~i~~s~~g~~l~sgs~Dg~i~i~~~~v--------------~~l~v~~~~~~~~i~Sgs~  729 (743)
                      .++.....   +..|    ..+.+++++.++++++.|+.+++|+...              ..+....+.+...+++++.
T Consensus       209 ~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~s~  288 (299)
T d1nr0a2         209 ANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQ  288 (299)
T ss_dssp             GGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTEEEEEET
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEEEECCCCCCCEEEEECCCCCCCEEEEEECCCCEEEEEEC
T ss_conf             11111111111111111111112466645138882899799998999973148983489889689999779899999928


Q ss_pred             CCEEEEECCCC
Q ss_conf             99099967995
Q 004603          730 KDSCCSHRELY  740 (743)
Q Consensus       730 DG~V~iWd~~~  740 (743)
                      |++|++||-.|
T Consensus       289 D~~i~iWdl~~  299 (299)
T d1nr0a2         289 DSNIKFWNVPF  299 (299)
T ss_dssp             TSCEEEEECCC
T ss_pred             CCEEEEEECCC
T ss_conf             99799994449

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=2.4e-28  Score=188.69  Aligned_cols=227  Identities=16%  Similarity=0.132  Sum_probs=162.4

Q ss_pred             CCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEEC
Q ss_conf             99789982279948998269999987743432223778401257984079999689999289999999958992999977
Q 004603          505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT  584 (743)
Q Consensus       505 ~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~si~fspdg~~Lasgs~Dg~V~IWDl  584 (743)
                      ...++++++.|+.+++|................ ...............+...++|++|+|++ +|++|+.|++|+|||+
T Consensus       135 ~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~  212 (393)
T d1sq9a_         135 LSHRLVATDVKGTTYIWKFHPFADESNSLTLNW-SPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISEL  212 (393)
T ss_dssp             -CEEEEEEETTSCEEEEEEESSSSHHHHTTTCC-CCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEET
T ss_pred             CCCEEEEECCCCCEEEEEEECCCCCCCEEEEEE-CCCEECCCCEECCCCCCCCEEEEEECCCC-EEEEEECCCCEEEEEE
T ss_conf             421799983898199987404775341023310-32000145100025789867899978999-8999938982999860


Q ss_pred             CCCEEEEEE------CCCCCCEEEEEECCCCCEEEEEECCC---EEEEEECCCCCEEEEEE-------------ECCCCC
Q ss_conf             998188997------04697779999969999899995999---09999888998248998-------------148998
Q 004603          585 ESFTVKSTL------EEHTQWITDVRFSPSLSRLATSSADR---TVRVWDTENPDYSLRTF-------------TGHSTT  642 (743)
Q Consensus       585 ~s~~~~~~l------~~H~~~V~~vafsp~~~~LvSgs~Dg---~IriWDl~~~~~~i~~~-------------~gh~~~  642 (743)
                      .+++.+..+      .+|...|.+++|+|++.+|++|+.|+   .|++||+.++.. +..+             .+|...
T Consensus       213 ~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~-~~~l~~~~~~~~~~~~~~gH~~~  291 (393)
T d1sq9a_         213 STLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGER-IGSLSVPTHSSQASLGEFAHSSW  291 (393)
T ss_dssp             TTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCE-EEEECBC--------CCBSBSSC
T ss_pred             CCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCEEEEECCCCCCCEEEECCCCCCEE-EEEECCCCCCCCCEEEEECCCCC
T ss_conf             23321100001111124256387700466532011242898842100103532134-44311566664310232023586


Q ss_pred             EEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEECCCC--------EEEECCCCEEEEEECCCEEEEEECCCCEEE
Q ss_conf             589999169990999981799299998999906699962471--------246307999999965985999956311389
Q 004603          643 VMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNL--------MPIILKGCFILNSIFNCYLLLHRIFLNLLS  714 (743)
Q Consensus       643 V~sl~fsp~g~~lL~Sgs~Dg~IriWDl~s~~~v~~l~~~~~--------i~~s~~g~~l~sgs~Dg~i~i~~~~v~~l~  714 (743)
                      |++++|+|+++ +|++++.|++|++||+++++++.++++|..        +.+.+++..+++++... +.++........
T Consensus       292 V~~l~fspd~~-~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  369 (393)
T d1sq9a_         292 VMSLSFNDSGE-TLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFD-VKFLKKGWRSGM  369 (393)
T ss_dssp             EEEEEECSSSS-EEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEE-EEEECTTTSBST
T ss_pred             EEEECCCCCCC-EEEEECCCCEEEEEECCCCCEEEEECCCCCCCCCCCCEEEECCCCCEEEECCCCE-EEECCCCCEECC
T ss_conf             66001389888-0698779998999999999799999886876137734899999999999831246-998866766312


Q ss_pred             EEECCCCCEEEEEECCCEEEEECC
Q ss_conf             873189998999969990999679
Q 004603          715 VSEWCNPDEISTSSWKDSCCSHRE  738 (743)
Q Consensus       715 v~~~~~~~~i~Sgs~DG~V~iWd~  738 (743)
                        .......+++++.|+.|++|++
T Consensus       370 --~~~~~~~~~~~~~d~~ir~~~~  391 (393)
T d1sq9a_         370 --GADLNESLCCVCLDRSIRWFRE  391 (393)
T ss_dssp             --TCTTSCEEEEEETTTEEEEEEE
T ss_pred             --CCCCCCEEEEEECCCEEEEEEC
T ss_conf             --3688997999991990899908

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=7.2e-25  Score=167.10  Aligned_cols=202  Identities=20%  Similarity=0.362  Sum_probs=161.3

Q ss_pred             CEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCC
Q ss_conf             78998227994899826999998774343222377840125798407999968999928999999995899299997799
Q 004603          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES  586 (743)
Q Consensus       507 ~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~si~fspdg~~Lasgs~Dg~V~IWDl~s  586 (743)
                      +++++|+.|+.|++|+...                   .+.+.++++|.+.|++++|  ++++|++|+.|+.|++|++..
T Consensus        26 ~~l~sgs~Dg~i~vWd~~~-------------------~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~   84 (293)
T d1p22a2          26 QKIVSGLRDNTIKIWDKNT-------------------LECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNT   84 (293)
T ss_dssp             SEEEEEESSSCEEEEESSS-------------------CCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSS
T ss_pred             CEEEEEECCCEEEEEECCC-------------------CCEEEEEECCCCCEEEEEC--CCCEEECCCCCCCCCCCCCCC
T ss_conf             9999992899399999999-------------------9199999267787763423--630021001110110000024


Q ss_pred             CEEEE-------------------------------------------EECCCCCCEEEEEECCCCCEEEEEECCCEEEE
Q ss_conf             81889-------------------------------------------97046977799999699998999959990999
Q 004603          587 FTVKS-------------------------------------------TLEEHTQWITDVRFSPSLSRLATSSADRTVRV  623 (743)
Q Consensus       587 ~~~~~-------------------------------------------~l~~H~~~V~~vafsp~~~~LvSgs~Dg~Iri  623 (743)
                      .....                                           .+..|...|.++.+.+  ..+++++.|+.|++
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~s~d~~i~~  162 (293)
T d1p22a2          85 GEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSASGDRTIKV  162 (293)
T ss_dssp             CCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET--TEEEEEETTSEEEE
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEECC--CCCCCCCCCCCEEE
T ss_conf             6410011111100001111110000013566306861344544421210001135431100000--22011069986041


Q ss_pred             EECCCCCEEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEECCCC--EEEECCCCEEEEEECCC
Q ss_conf             9888998248998148998589999169990999981799299998999906699962471--24630799999996598
Q 004603          624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNL--MPIILKGCFILNSIFNC  701 (743)
Q Consensus       624 WDl~~~~~~i~~~~gh~~~V~sl~fsp~g~~lL~Sgs~Dg~IriWDl~s~~~v~~l~~~~~--i~~s~~g~~l~sgs~Dg  701 (743)
                      ||+++... +..+.++...|..+.+++.   .+++++.|+.|++||+++..++..+.++..  ..+..++.++++++.|+
T Consensus       163 ~d~~~~~~-~~~~~~~~~~v~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg  238 (293)
T d1p22a2         163 WNTSTCEF-VRTLNGHKRGIACLQYRDR---LVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDG  238 (293)
T ss_dssp             EETTTCCE-EEEEECCSSCEEEEEEETT---EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEECCSSEEEEEETTS
T ss_pred             ECCCCCCE-EEEECCCCCCCCCCCCCCC---EEEEECCCCEEEEEECCCCEEEEEECCCCEEEEECCCCCEEEEEECCCC
T ss_conf             00788838-8997155445322168987---5887658998999866556146652143100000145410799986799


Q ss_pred             EEEEEECCC---------------------CEEEEEECCCCCEEEEEECCCEEEEEC
Q ss_conf             599995631---------------------138987318999899996999099967
Q 004603          702 YLLLHRIFL---------------------NLLSVSEWCNPDEISTSSWKDSCCSHR  737 (743)
Q Consensus       702 ~i~i~~~~v---------------------~~l~v~~~~~~~~i~Sgs~DG~V~iWd  737 (743)
                      .+++|+...                     .+.++.++  +.+|++++.||+|++||
T Consensus       239 ~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d--~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         239 KIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             CEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC--SSCEEECCSSSEEEEEC
T ss_pred             EEEEEECCCCCCCCCCCCCEEEEEECCCCCCEEEEEEC--CCEEEEEECCCEEEEEC
T ss_conf             79999888886444567754557845889988999971--99999992299899959

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=7.1e-25  Score=167.13  Aligned_cols=193  Identities=14%  Similarity=0.137  Sum_probs=120.0

Q ss_pred             EEEEEEECC-CCCEEEEEECC--CCCEEEEEECCCCEEEEECCCCE--------EEEEECCCCCCEEEEEECCCCCEEEE
Q ss_conf             257984079-99968999928--99999999589929999779981--------88997046977799999699998999
Q 004603          546 TEFQLIPAS-TSKVESCHFSP--DGKLLATGGHDKKAVLWCTESFT--------VKSTLEEHTQWITDVRFSPSLSRLAT  614 (743)
Q Consensus       546 ~~~~~l~~H-~~~V~si~fsp--dg~~Lasgs~Dg~V~IWDl~s~~--------~~~~l~~H~~~V~~vafsp~~~~LvS  614 (743)
                      ..+..+.+| ...|++++|+|  ++.+|++|+.|++|+|||+...+        ....+..|.+.|.+++|++++.++++
T Consensus        53 ~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~  132 (325)
T d1pgua1          53 PPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCV  132 (325)
T ss_dssp             CSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred             CCEEEEECCCCCCEEEEEEEECCCCCEEEEEECCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCE
T ss_conf             50289907899988999981179997999994899779854058862156510025411365673779998999882201


Q ss_pred             EEC--CCEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEECC-------CCE
Q ss_conf             959--99099998889982489981489985899991699909999817992999989999066999624-------712
Q 004603          615 SSA--DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVC-------NLM  685 (743)
Q Consensus       615 gs~--Dg~IriWDl~~~~~~i~~~~gh~~~V~sl~fsp~g~~lL~Sgs~Dg~IriWDl~s~~~v~~l~~~-------~~i  685 (743)
                      ++.  ++.+++|+.+++. ++..+.+|...|.+++|+|++..++++++.|+.|++||+...+....+..+       ..+
T Consensus       133 ~~~~~~~~~~~~~~~~~~-~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v  211 (325)
T d1pgua1         133 VGEGRDNFGVFISWDSGN-SLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDV  211 (325)
T ss_dssp             EECCSSCSEEEEETTTCC-EEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEE
T ss_pred             EECCCCCEEEEEEECCCC-CCEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCEECCCCCCCCCCCEEE
T ss_conf             001244047888502331-1001200123432111123432068886211122111122110000000015777752776


Q ss_pred             EEECC-CCEEEEEECCCEEEEEECCCCE--------------EEEEE-CCCCCEEEEEECCCEEEEECCC
Q ss_conf             46307-9999999659859999563113--------------89873-1899989999699909996799
Q 004603          686 PIILK-GCFILNSIFNCYLLLHRIFLNL--------------LSVSE-WCNPDEISTSSWKDSCCSHREL  739 (743)
Q Consensus       686 ~~s~~-g~~l~sgs~Dg~i~i~~~~v~~--------------l~v~~-~~~~~~i~Sgs~DG~V~iWd~~  739 (743)
                      .|+|+ +.++++++.|+.|++|+.....              ..++. ..++.++++++.|+.|++||-.
T Consensus       212 ~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~  281 (325)
T d1pgua1         212 EFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVT  281 (325)
T ss_dssp             EECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETT
T ss_pred             EECCCCCEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEECCCEEEEEECC
T ss_conf             3034531000011233210134300122211111111111110000003689999999589939999999

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=3.8e-24  Score=162.62  Aligned_cols=225  Identities=17%  Similarity=0.227  Sum_probs=159.0

Q ss_pred             CCEEEEEECCCCEEEEECCCCCCCCCC----CCCCCCCCCCCEEEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEE
Q ss_conf             978998227994899826999998774----3432223778401257984079999689999289999999958992999
Q 004603          506 DRFVDDGSLDDNVESFLSPDDADPRDR----VGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVL  581 (743)
Q Consensus       506 ~~~l~sGs~D~~V~iw~s~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~H~~~V~si~fspdg~~Lasgs~Dg~V~I  581 (743)
                      ..++++++.|+.+++|+..........    .....................|...|.+..  +++++++++..|+.|++
T Consensus       108 ~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~~~d~~i~~  185 (355)
T d1nexb2         108 IKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVS--GHGNIVVSGSYDNTLIV  185 (355)
T ss_dssp             EEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEE--EETTEEEEEETTSCEEE
T ss_pred             CCEEEEECCCCCEEEEECCCCCEECCCCCCCEECCCEECCCCCCCEEEEEEECCCCCCCCC--CCCCEEEEECCCCEEEE
T ss_conf             2204554388868999856773001246520001000001123401210110022210000--25633442114420444


Q ss_pred             EECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCCCEEEEEEC
Q ss_conf             97799818899704697779999969999899995999099998889982489981489985899991699909999817
Q 004603          582 WCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN  661 (743)
Q Consensus       582 WDl~s~~~~~~l~~H~~~V~~vafsp~~~~LvSgs~Dg~IriWDl~~~~~~i~~~~gh~~~V~sl~fsp~g~~lL~Sgs~  661 (743)
                      ||+.+.+.+..+.++...+.++.|++++.++++++.|+.|++||++++.. +..+.+|...|.++.|++.   ++++++.
T Consensus       186 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~-~~~~~~h~~~v~~~~~~~~---~l~~~~~  261 (355)
T d1nexb2         186 WDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGEL-MYTLQGHTALVGLLRLSDK---FLVSAAA  261 (355)
T ss_dssp             EETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCE-EEEECCCSSCCCEEEECSS---EEEEECT
T ss_pred             EECCCCCCEEEEECCCCCCCCCCCCCCCEEEECCCCCCEEEEEECCCCCC-CCCCCCCCCCCCCCCCCCC---EEEEEEC
T ss_conf             30131100011000123321111112100210124563687630122111-1111111111111123210---0333201


Q ss_pred             CCCEEEEECCCCEEEEEEECCC--C-EEEECCCCEEEEEECCCEEEEEECCC-------------CEEEEEECCCCCEEE
Q ss_conf             9929999899990669996247--1-24630799999996598599995631-------------138987318999899
Q 004603          662 NSEIRYWSINNGSCAGVFKVCN--L-MPIILKGCFILNSIFNCYLLLHRIFL-------------NLLSVSEWCNPDEIS  725 (743)
Q Consensus       662 Dg~IriWDl~s~~~v~~l~~~~--~-i~~s~~g~~l~sgs~Dg~i~i~~~~v-------------~~l~v~~~~~~~~i~  725 (743)
                      |+.|++||+++...........  . ..+.+++.+++++ .|+.|++|+...             .+.++.+.+ ...++
T Consensus       262 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g-~d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~-~~~~~  339 (355)
T d1nexb2         262 DGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSG-SENQFNIYNLRSGKLVHANILKDADQIWSVNFKG-KTLVA  339 (355)
T ss_dssp             TSEEEEEETTTCCEEEEEECTTCCCCCEEEECSSEEEEE-ETTEEEEEETTTCCBCCSCTTTTCSEEEEEEEET-TEEEE
T ss_pred             CCCCCCCCCCCCCEECCCCCCCCEEEEEECCCCCEEEEE-ECCEEEEEECCCCCEEEEEECCCCCCEEEEEECC-CEEEE
T ss_conf             111111111111100012468822999984999899998-0997999999999798888458999899999839-91999


Q ss_pred             EEECCCEEEEECC
Q ss_conf             9969990999679
Q 004603          726 TSSWKDSCCSHRE  738 (743)
Q Consensus       726 Sgs~DG~V~iWd~  738 (743)
                      +++.||.+++|.-
T Consensus       340 ~~s~dg~~~l~~~  352 (355)
T d1nexb2         340 AVEKDGQSFLEIL  352 (355)
T ss_dssp             EEESSSCEEEEEE
T ss_pred             EEECCCCEEEEEE
T ss_conf             9989890999999

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=3.6e-24  Score=162.80  Aligned_cols=170  Identities=21%  Similarity=0.337  Sum_probs=130.9

Q ss_pred             CCCCEEEEEECCCCEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCCEE
Q ss_conf             89999999958992999977998188997046977799999699998999959990999988899824899814899858
Q 004603          565 PDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVM  644 (743)
Q Consensus       565 pdg~~Lasgs~Dg~V~IWDl~s~~~~~~l~~H~~~V~~vafsp~~~~LvSgs~Dg~IriWDl~~~~~~i~~~~gh~~~V~  644 (743)
                      .....+++++.|+.|++||......+..+.+|...+.++.+  ++.++++++.|+.|++||++.... +..+.+|...+.
T Consensus       145 ~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~~~dg~i~~~d~~~~~~-~~~~~~~~~~v~  221 (342)
T d2ovrb2         145 YDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNC-IHTLTGHQSLTS  221 (342)
T ss_dssp             ECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCE-EEEECCCCSCEE
T ss_pred             CCCCEEEEECCCCEEEEEECCCCEEEEEECCCCCCCCCCCC--CCCEEEEEECCCEEEEEECCCCEE-EEEECCCCCCEE
T ss_conf             13330243358986999525234366787275444210068--999999995899399952556536-567416653205


Q ss_pred             EEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEECCC-----CEEEECCCCEEEEEECCCEEEEEECCCC--------
Q ss_conf             999916999099998179929999899990669996247-----1246307999999965985999956311--------
Q 004603          645 SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCN-----LMPIILKGCFILNSIFNCYLLLHRIFLN--------  711 (743)
Q Consensus       645 sl~fsp~g~~lL~Sgs~Dg~IriWDl~s~~~v~~l~~~~-----~i~~s~~g~~l~sgs~Dg~i~i~~~~v~--------  711 (743)
                      ++.++++   ++++++.|+.|++||+...+....+..+.     ...+..++.++++++.|++|++|+....        
T Consensus       222 ~~~~~~~---~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~  298 (342)
T d2ovrb2         222 GMELKDN---ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVT  298 (342)
T ss_dssp             EEEEETT---EEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEEE
T ss_pred             EEECCCC---EEEEECCCCEEEEEECCCCCCCCCCCCCCEEEECEEECCCCCCEEEEECCCCEEEEEECCCCCEEEEEEC
T ss_conf             7706899---9999748988999865544221112210001101000013798449990899899999999979899862


Q ss_pred             ---------EEEEEECCCCCEEEEEECCCE----EEEECCCC
Q ss_conf             ---------389873189998999969990----99967995
Q 004603          712 ---------LLSVSEWCNPDEISTSSWKDS----CCSHRELY  740 (743)
Q Consensus       712 ---------~l~v~~~~~~~~i~Sgs~DG~----V~iWd~~~  740 (743)
                               +..+.+.+++..+++|+.||+    |++||-+.
T Consensus       299 ~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         299 LESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             CTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             CCCCCCCCCEEEEEECCCCCEEEEEECCCCCEEEEEEEECCC
T ss_conf             347898897899998799989999968999704899993899

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=7e-25  Score=167.20  Aligned_cols=181  Identities=18%  Similarity=0.367  Sum_probs=159.2

Q ss_pred             CCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECC
Q ss_conf             97899822799489982699999877434322237784012579840799996899992899999999589929999779
Q 004603          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE  585 (743)
Q Consensus       506 ~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~si~fspdg~~Lasgs~Dg~V~IWDl~  585 (743)
                      +..+++++.|+.+++|+...+                   .....+.+|...+.+++|++++.+|++++.|+.|++|+..
T Consensus       113 ~~~~~~~~~d~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~  173 (317)
T d1vyhc1         113 GDHIVSASRDKTIKMWEVQTG-------------------YCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVA  173 (317)
T ss_dssp             SSEEEEEETTSEEEEEETTTC-------------------CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             CCEEEEECCCCCEEEEECCCC-------------------EEEEEECCCCCCCEEEECCCCCCEEEEEECCCEEEEEEEC
T ss_conf             855776526752357511443-------------------0346871677763000016679999999279829997512


Q ss_pred             CCEEEEEECCCCCCEEEEEECCCC--------------------CEEEEEECCCEEEEEECCCCCEEEEEEECCCCCEEE
Q ss_conf             981889970469777999996999--------------------989999599909999888998248998148998589
Q 004603          586 SFTVKSTLEEHTQWITDVRFSPSL--------------------SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS  645 (743)
Q Consensus       586 s~~~~~~l~~H~~~V~~vafsp~~--------------------~~LvSgs~Dg~IriWDl~~~~~~i~~~~gh~~~V~s  645 (743)
                      +.+....+.+|...+.+++|+|+.                    ..+++++.|+.|++||++++. ++..+.+|...|.+
T Consensus       174 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~-~~~~~~~~~~~v~~  252 (317)
T d1vyhc1         174 TKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM-CLMTLVGHDNWVRG  252 (317)
T ss_dssp             TCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTE-EEEEEECCSSCEEE
T ss_pred             CCEEEEEEECCCCCCEEEEEEECCCCCEEECCCCCEEEEECCCCCEEEECCCCCEEEEEECCCCC-EEEEEECCCCCEEE
T ss_conf             54034788247787337998632564111034563034302588614751699789998889996-88999688998799


Q ss_pred             EEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEECCC----CEEEECCCCEEEEEECCCEEEEEE
Q ss_conf             99916999099998179929999899990669996247----124630799999996598599995
Q 004603          646 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCN----LMPIILKGCFILNSIFNCYLLLHR  707 (743)
Q Consensus       646 l~fsp~g~~lL~Sgs~Dg~IriWDl~s~~~v~~l~~~~----~i~~s~~g~~l~sgs~Dg~i~i~~  707 (743)
                      ++|+|++. +|++++.|+.|++||+++++++.++.+|.    .+.|++++.+|++++.|++|++|+
T Consensus       253 ~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         253 VLFHSGGK-FILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             EEECSSSS-CEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             EEECCCCC-EEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEC
T ss_conf             99879999-999997989499999999919999928999889999949999999992899499829

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.95  E-value=2.1e-24  Score=164.16  Aligned_cols=155  Identities=19%  Similarity=0.214  Sum_probs=127.0

Q ss_pred             CCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEE-EECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEE
Q ss_conf             99996899992899999999589929999779981889-97046977799999699998999959990999988899824
Q 004603          554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS  632 (743)
Q Consensus       554 H~~~V~si~fspdg~~Lasgs~Dg~V~IWDl~s~~~~~-~l~~H~~~V~~vafsp~~~~LvSgs~Dg~IriWDl~~~~~~  632 (743)
                      ....+.+++|+|++++|++|+.|+.|++||+++..... ....|...|++++|+|++.+|++++.|+.|++||+.+....
T Consensus       135 ~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~  214 (299)
T d1nr0a2         135 ISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFEL  214 (299)
T ss_dssp             CSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEE
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             11123322111111111111111111111111111111111111111111111111111111111111111111111111


Q ss_pred             --EEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEEC--CC----CEEEECCCCEEEEEECCCEEE
Q ss_conf             --8998148998589999169990999981799299998999906699962--47----124630799999996598599
Q 004603          633 --LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKV--CN----LMPIILKGCFILNSIFNCYLL  704 (743)
Q Consensus       633 --i~~~~gh~~~V~sl~fsp~g~~lL~Sgs~Dg~IriWDl~s~~~v~~l~~--~~----~i~~s~~g~~l~sgs~Dg~i~  704 (743)
                        ...+.+|...|.+++|+|++. ++++++.|+.|++||++++.....+..  +.    ...+.+++.+|++++.|++|+
T Consensus       215 ~~~~~~~~h~~~v~~l~~s~~~~-~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~s~D~~i~  293 (299)
T d1nr0a2         215 AHTNSWTFHTAKVACVSWSPDNV-RLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIK  293 (299)
T ss_dssp             SCCCCCCCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTEEEEEETTSCEE
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCC-CEEEECCCCEEEEEECCCCCCCEEEEECCCCCCCEEEEEECCCCEEEEEECCCEEE
T ss_conf             11111111111111112466645-13888289979999899997314898348988968999977989999992899799


Q ss_pred             EEECC
Q ss_conf             99563
Q 004603          705 LHRIF  709 (743)
Q Consensus       705 i~~~~  709 (743)
                      +|+..
T Consensus       294 iWdl~  298 (299)
T d1nr0a2         294 FWNVP  298 (299)
T ss_dssp             EEECC
T ss_pred             EEECC
T ss_conf             99444

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2.2e-24  Score=164.05  Aligned_cols=206  Identities=20%  Similarity=0.259  Sum_probs=127.5

Q ss_pred             CEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCC
Q ss_conf             78998227994899826999998774343222377840125798407999968999928999999995899299997799
Q 004603          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES  586 (743)
Q Consensus       507 ~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~si~fspdg~~Lasgs~Dg~V~IWDl~s  586 (743)
                      +++++|+.|+.|++|+...+                   +.+..+.+|.+.|.+++|+++  +|++|+.|+.+++|+...
T Consensus        28 ~~l~sgs~Dg~i~vWd~~~~-------------------~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~~~   86 (342)
T d2ovrb2          28 NRIVSGSDDNTLKVWSAVTG-------------------KCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAET   86 (342)
T ss_dssp             TEEEEEETTSCEEEEETTTC-------------------CEEEECCCCSSCEEEEEEETT--EEEEEETTSCEEEEETTT
T ss_pred             CEEEEEECCCEEEEEECCCC-------------------CEEEEEECCCCCEEEEEECCC--CCCCCEECCCCCCCCCCC
T ss_conf             99999918990999989999-------------------799999488999899994798--632100000111111110


Q ss_pred             CEEEEEECCCCCCEEE--------------------------------------EEECCCCCEEEEEECCCEEEEEECCC
Q ss_conf             8188997046977799--------------------------------------99969999899995999099998889
Q 004603          587 FTVKSTLEEHTQWITD--------------------------------------VRFSPSLSRLATSSADRTVRVWDTEN  628 (743)
Q Consensus       587 ~~~~~~l~~H~~~V~~--------------------------------------vafsp~~~~LvSgs~Dg~IriWDl~~  628 (743)
                      .........+...+..                                      ..+.+....+++++.|+.|++||++.
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~  166 (342)
T d2ovrb2          87 GECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPET  166 (342)
T ss_dssp             TEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGG
T ss_pred             CCCEECCCCCCEEEEEEECCCCCCCCCCCCEEEEEEECCCCCCEEEEECCCCCCEEECCCCCEEEEECCCCEEEEEECCC
T ss_conf             00000012333047652024652212344403787403556300111001111000001333024335898699952523


Q ss_pred             CCEEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEECCCC--EEEECCCCEEEEEECCCEEEEE
Q ss_conf             98248998148998589999169990999981799299998999906699962471--2463079999999659859999
Q 004603          629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNL--MPIILKGCFILNSIFNCYLLLH  706 (743)
Q Consensus       629 ~~~~i~~~~gh~~~V~sl~fsp~g~~lL~Sgs~Dg~IriWDl~s~~~v~~l~~~~~--i~~s~~g~~l~sgs~Dg~i~i~  706 (743)
                      .. ++..+.+|...+..+.+.  +. .+++++.|+.|++||++.++++..+..+..  .++.+++.++++++.|+.+++|
T Consensus       167 ~~-~~~~~~~~~~~~~~~~~~--~~-~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~s~d~~i~iw  242 (342)
T d2ovrb2         167 ET-CLHTLQGHTNRVYSLQFD--GI-HVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIW  242 (342)
T ss_dssp             TE-EEEEECCCSSCEEEEEEC--SS-EEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEETTEEEEEETTSCEEEE
T ss_pred             CE-EEEEECCCCCCCCCCCCC--CC-EEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEECCCCEEEEECCCCEEEEE
T ss_conf             43-667872754442100689--99-999995899399952556536567416653205770689999997489889998


Q ss_pred             ECCCC---------------EEEEEECCCCCEEEEEECCCEEEEECCC
Q ss_conf             56311---------------3898731899989999699909996799
Q 004603          707 RIFLN---------------LLSVSEWCNPDEISTSSWKDSCCSHREL  739 (743)
Q Consensus       707 ~~~v~---------------~l~v~~~~~~~~i~Sgs~DG~V~iWd~~  739 (743)
                      +....               ...+.+.  +.++++++.||+|++||-.
T Consensus       243 d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd~~  288 (342)
T d2ovrb2         243 DIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLK  288 (342)
T ss_dssp             ETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETT
T ss_pred             ECCCCCCCCCCCCCCEEEECEEECCCC--CCEEEEECCCCEEEEEECC
T ss_conf             655442211122100011010000137--9844999089989999999

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=9e-24  Score=160.31  Aligned_cols=212  Identities=16%  Similarity=0.212  Sum_probs=153.7

Q ss_pred             CEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCC
Q ss_conf             78998227994899826999998774343222377840125798407999968999928999999995899299997799
Q 004603          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES  586 (743)
Q Consensus       507 ~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~si~fspdg~~Lasgs~Dg~V~IWDl~s  586 (743)
                      +++++|+.|++|++|+...+                   +.+..+.+|.+.|++++|+++ .+|++|+.|++|++|+...
T Consensus        24 ~~l~tgs~Dg~i~vWd~~~~-------------------~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~   83 (355)
T d1nexb2          24 NYVITGADDKMIRVYDSINK-------------------KFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKK   83 (355)
T ss_dssp             TEEEEEETTTEEEEEETTTT-------------------EEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEETTT
T ss_pred             CEEEEEECCCEEEEEECCCC-------------------CEEEEEECCCCCEEEEEECCC-CEEEEEECCCCCCCCCCCC
T ss_conf             99999918990999989999-------------------399999789998899998699-9999996452443211111


Q ss_pred             CEEEEEECCCCC--CEEEEEECCCCCEEEEEECCCEEEEEECCCCC----------------------------------
Q ss_conf             818899704697--77999996999989999599909999888998----------------------------------
Q 004603          587 FTVKSTLEEHTQ--WITDVRFSPSLSRLATSSADRTVRVWDTENPD----------------------------------  630 (743)
Q Consensus       587 ~~~~~~l~~H~~--~V~~vafsp~~~~LvSgs~Dg~IriWDl~~~~----------------------------------  630 (743)
                      .........+..  .+..+.+.+++..+++++.|+.|++||++...                                  
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (355)
T d1nexb2          84 GCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMAS  163 (355)
T ss_dssp             TEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSC
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCCCEECCCCCCCEECCCEECCCCCCCEEEEEEECCCC
T ss_conf             11111110011111111111112322045543888689998567730012465200010000011234012101100222


Q ss_pred             ----------------------------EEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEECC
Q ss_conf             ----------------------------2489981489985899991699909999817992999989999066999624
Q 004603          631 ----------------------------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVC  682 (743)
Q Consensus       631 ----------------------------~~i~~~~gh~~~V~sl~fsp~g~~lL~Sgs~Dg~IriWDl~s~~~v~~l~~~  682 (743)
                                                  ..+..+.++...+.++.|++.+. ++++++.|+.|++||++++.++..+.+|
T Consensus       164 v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~i~i~d~~~~~~~~~~~~h  242 (355)
T d1nexb2         164 VRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERK-RCISASMDTTIRIWDLENGELMYTLQGH  242 (355)
T ss_dssp             EEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTT-EEEEEETTSCEEEEETTTCCEEEEECCC
T ss_pred             CCCCCCCCCEEEEECCCCEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCE-EEECCCCCCEEEEEECCCCCCCCCCCCC
T ss_conf             100002563344211442044430131100011000123321111112100-2101245636876301221111111111


Q ss_pred             CC--EEEECCCCEEEEEECCCEEEEEECCCCEEEEE----------ECCCCCEEEEEECCCEEEEECCC
Q ss_conf             71--24630799999996598599995631138987----------31899989999699909996799
Q 004603          683 NL--MPIILKGCFILNSIFNCYLLLHRIFLNLLSVS----------EWCNPDEISTSSWKDSCCSHREL  739 (743)
Q Consensus       683 ~~--i~~s~~g~~l~sgs~Dg~i~i~~~~v~~l~v~----------~~~~~~~i~Sgs~DG~V~iWd~~  739 (743)
                      ..  .++..++.++++++.|+.|++|+.......+.          ...+.+.+++++.|+.|++||-.
T Consensus       243 ~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~d~~i~vwd~~  311 (355)
T d1nexb2         243 TALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLR  311 (355)
T ss_dssp             SSCCCEEEECSSEEEEECTTSEEEEEETTTCCEEEEEECTTCCCCCEEEECSSEEEEEETTEEEEEETT
T ss_pred             CCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEECCCCCCCCEEEEEECCCCCEEEEEECCEEEEEECC
T ss_conf             111111123210033320111111111111110001246882299998499989999809979999999

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=6.5e-23  Score=154.99  Aligned_cols=155  Identities=19%  Similarity=0.339  Sum_probs=75.6

Q ss_pred             EEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEE
Q ss_conf             12579840799996899992899999999589929999779981889970469777999996999989999599909999
Q 004603          545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW  624 (743)
Q Consensus       545 ~~~~~~l~~H~~~V~si~fspdg~~Lasgs~Dg~V~IWDl~s~~~~~~l~~H~~~V~~vafsp~~~~LvSgs~Dg~IriW  624 (743)
                      ......+..|...|.++.+.  ...+++++.|+.|++||+++.+.+..+.++...|..+.++  +..+++++.|+.|++|
T Consensus       128 ~~~~~~~~~~~~~v~~~~~~--~~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~  203 (293)
T d1p22a2         128 ITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLW  203 (293)
T ss_dssp             CEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEE
T ss_pred             CCCCCCCCCCCCCCCCCEEC--CCCCCCCCCCCCEEEECCCCCCEEEEECCCCCCCCCCCCC--CCEEEEECCCCEEEEE
T ss_conf             42121000113543110000--0220110699860410078883889971554453221689--8758876589989998


Q ss_pred             ECCCCCEEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCC---------CEEEEEEECCCC--EEEECCCCE
Q ss_conf             888998248998148998589999169990999981799299998999---------906699962471--246307999
Q 004603          625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN---------GSCAGVFKVCNL--MPIILKGCF  693 (743)
Q Consensus       625 Dl~~~~~~i~~~~gh~~~V~sl~fsp~g~~lL~Sgs~Dg~IriWDl~s---------~~~v~~l~~~~~--i~~s~~g~~  693 (743)
                      |+++... +..+.++...+..+.  +++ .++++++.|+.|++||+..         ..++..+.+|..  ..+..++.+
T Consensus       204 d~~~~~~-~~~~~~~~~~v~~~~--~~~-~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d~~~  279 (293)
T d1p22a2         204 DIECGAC-LRVLEGHEELVRCIR--FDN-KRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQ  279 (293)
T ss_dssp             ETTTCCE-EEEECCCSSCEEEEE--CCS-SEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEECSSC
T ss_pred             ECCCCEE-EEEECCCCEEEEECC--CCC-EEEEEECCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCCEEEEEECCCE
T ss_conf             6655614-665214310000014--541-079998679979999888886444567754557845889988999971999


Q ss_pred             EEEEECCCEEEEEE
Q ss_conf             99996598599995
Q 004603          694 ILNSIFNCYLLLHR  707 (743)
Q Consensus       694 l~sgs~Dg~i~i~~  707 (743)
                      |++++.|++|++|+
T Consensus       280 l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         280 IVSSSHDDTILIWD  293 (293)
T ss_dssp             EEECCSSSEEEEEC
T ss_pred             EEEEECCCEEEEEC
T ss_conf             99992299899959

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=1.1e-22  Score=153.58  Aligned_cols=235  Identities=9%  Similarity=-0.057  Sum_probs=154.7

Q ss_pred             CCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEE
Q ss_conf             43347899811899924899533236864467997899822799489982699999877434322237784012579840
Q 004603          473 TLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP  552 (743)
Q Consensus       473 ~l~~~~s~~~s~l~~~~d~~~~l~~s~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  552 (743)
                      .+...+...++.+.|+|++               ++|++|+.|++|++|+....                ..........
T Consensus         5 ~~~~~h~d~I~~l~fsp~~---------------~~L~s~s~Dg~v~iwd~~~~----------------~~~~~~~~~~   53 (342)
T d1yfqa_           5 QIEQAPKDYISDIKIIPSK---------------SLLLITSWDGSLTVYKFDIQ----------------AKNVDLLQSL   53 (342)
T ss_dssp             ECSSCCSSCEEEEEEEGGG---------------TEEEEEETTSEEEEEEEETT----------------TTEEEEEEEE
T ss_pred             ECCCCCCCCEEEEEEECCC---------------CEEEEEECCCEEEEEECCCC----------------CCCEEEEEEC
T ss_conf             7688998978889995899---------------99999979992999975699----------------8636898855


Q ss_pred             CCCCCEEEEEECCC-CCEEEEEECCCCEEEEECCCCEEEEEECCCCCC-EEEEEECCCCCEEEEEECCCEEEEEECCCCC
Q ss_conf             79999689999289-999999958992999977998188997046977-7999996999989999599909999888998
Q 004603          553 ASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW-ITDVRFSPSLSRLATSSADRTVRVWDTENPD  630 (743)
Q Consensus       553 ~H~~~V~si~fspd-g~~Lasgs~Dg~V~IWDl~s~~~~~~l~~H~~~-V~~vafsp~~~~LvSgs~Dg~IriWDl~~~~  630 (743)
                      +|.+.|+|++|+|+ +.+|++|+.|+.|++|++...........+... .....+.++...+++++.|+++++||++...
T Consensus        54 ~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~  133 (342)
T d1yfqa_          54 RYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYG  133 (342)
T ss_dssp             ECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHT
T ss_pred             CCCCCEEEEEEECCCCCEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCC
T ss_conf             89998899999589997899812653114542044320000011111111111111111111110122211102023444


Q ss_pred             EEE---EEEECCC--CCEEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEECC---C-----CEEEECCCCEEEEE
Q ss_conf             248---9981489--985899991699909999817992999989999066999624---7-----12463079999999
Q 004603          631 YSL---RTFTGHS--TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVC---N-----LMPIILKGCFILNS  697 (743)
Q Consensus       631 ~~i---~~~~gh~--~~V~sl~fsp~g~~lL~Sgs~Dg~IriWDl~s~~~v~~l~~~---~-----~i~~s~~g~~l~sg  697 (743)
                      ...   .....+.  .....+.+.+.+. .+++++.|+.|++||++...........   .     ...+..++..++++
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (342)
T d1yfqa_         134 DGVIAVKNLNSNNTKVKNKIFTMDTNSS-RLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACS  212 (342)
T ss_dssp             TBCEEEEESCSSSSSSCCCEEEEEECSS-EEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEE
T ss_pred             CCEEEECCCCCCCCCCEEEEEEEECCCC-CEEEECCCCCEEEEECCCCCCCCEEEEECCCCCCEEEEEEECCCCCEEEEE
T ss_conf             3302300024300120000010001687-024651798478876056763411121025422101467636999878865


Q ss_pred             ECCCEEEEEECCC---------------------------CEEEEEECCCCCEEEEEECCCEEEEECCC
Q ss_conf             6598599995631---------------------------13898731899989999699909996799
Q 004603          698 IFNCYLLLHRIFL---------------------------NLLSVSEWCNPDEISTSSWKDSCCSHREL  739 (743)
Q Consensus       698 s~Dg~i~i~~~~v---------------------------~~l~v~~~~~~~~i~Sgs~DG~V~iWd~~  739 (743)
                      +.|+.+.+|....                           ...++.+.++..+|++|+.||+|++||-.
T Consensus       213 s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~  281 (342)
T d1yfqa_         213 SIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQ  281 (342)
T ss_dssp             ETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETT
T ss_pred             CCCCEEEEEEECCCCCEEECCCCCEEEEEEECCCCCCCCCCCEEEEECCCCCEEEEECCCCEEEEEECC
T ss_conf             489959999805986401112351256555314777623543159966984479998799989999999

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=1.5e-22  Score=152.71  Aligned_cols=193  Identities=13%  Similarity=0.165  Sum_probs=134.4

Q ss_pred             CEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCEEEEEECCC-----CCEEEEEECCCCEEE
Q ss_conf             789982279948998269999987743432223778401257984079999689999289-----999999958992999
Q 004603          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD-----GKLLATGGHDKKAVL  581 (743)
Q Consensus       507 ~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~si~fspd-----g~~Lasgs~Dg~V~I  581 (743)
                      .++++++.|+.+++|.................         ......+...+..++|.++     +.++++++.|+++++
T Consensus        80 ~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~v  150 (393)
T d1sq9a_          80 CLVATTSFSGDLLFYRITREDETKKVIFEKLD---------LLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYI  150 (393)
T ss_dssp             EEEEEEETTSCEEEEEEEECTTTCCEEEEEEC---------CSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEE
T ss_pred             CEEEEEECCCCEEEEECCCCCCEEEEECCCCC---------EEEECCCCCCEEEEEEECCCCCCCCCEEEEECCCCCEEE
T ss_conf             68999948991999982289820565124563---------243115789668999844788654217999838981999


Q ss_pred             EECCCCE------------------EEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEE------EEE
Q ss_conf             9779981------------------8899704697779999969999899995999099998889982489------981
Q 004603          582 WCTESFT------------------VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR------TFT  637 (743)
Q Consensus       582 WDl~s~~------------------~~~~l~~H~~~V~~vafsp~~~~LvSgs~Dg~IriWDl~~~~~~i~------~~~  637 (743)
                      |++....                  .......+...+.+++|+|++ +|++|+.|++|++||+.++.. +.      .+.
T Consensus       151 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~-~~~~~~~~~l~  228 (393)
T d1sq9a_         151 WKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRP-LYNFESQHSMI  228 (393)
T ss_dssp             EEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEE-EEEEECCC---
T ss_pred             EEEECCCCCCCEEEEEECCCEECCCCEECCCCCCCCEEEEEECCCC-EEEEEECCCCEEEEEECCCCC-CCCCCCCCCCC
T ss_conf             8740477534102331032000145100025789867899978999-899993898299986023321-10000111112


Q ss_pred             CCCCCEEEEEEECCCCCEEEEEECCCC---EEEEECCCCEEEEEEE-------------CC----CCEEEECCCCEEEEE
Q ss_conf             489985899991699909999817992---9999899990669996-------------24----712463079999999
Q 004603          638 GHSTTVMSLDFHPSKEDLLCSCDNNSE---IRYWSINNGSCAGVFK-------------VC----NLMPIILKGCFILNS  697 (743)
Q Consensus       638 gh~~~V~sl~fsp~g~~lL~Sgs~Dg~---IriWDl~s~~~v~~l~-------------~~----~~i~~s~~g~~l~sg  697 (743)
                      +|...|.+++|+|++. +|++++.|++   |++||+.+++++..+.             +|    ..++|+|++.+|+++
T Consensus       229 ~h~~~V~~l~~spdg~-~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~  307 (393)
T d1sq9a_         229 NNSNSIRSVKFSPQGS-LLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSA  307 (393)
T ss_dssp             CCCCCEEEEEECSSTT-EEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEE
T ss_pred             CCCCEEEECCCCCCCC-EEEEECCCCCCCEEEECCCCCCEEEEEECCCCCCCCCEEEEECCCCCEEEECCCCCCCEEEEE
T ss_conf             4256387700466532-011242898842100103532134443115666643102320235866600138988806987


Q ss_pred             ECCCEEEEEECCCC
Q ss_conf             65985999956311
Q 004603          698 IFNCYLLLHRIFLN  711 (743)
Q Consensus       698 s~Dg~i~i~~~~v~  711 (743)
                      +.|++|++|+....
T Consensus       308 s~D~~v~vWd~~~g  321 (393)
T d1sq9a_         308 GWDGKLRFWDVKTK  321 (393)
T ss_dssp             ETTSEEEEEETTTT
T ss_pred             CCCCEEEEEECCCC
T ss_conf             79998999999999

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.90  E-value=1.4e-20  Score=140.58  Aligned_cols=223  Identities=10%  Similarity=-0.010  Sum_probs=152.8

Q ss_pred             CCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCC--CEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCC
Q ss_conf             99811899924899533236864467997899822799--4899826999998774343222377840125798407999
Q 004603          479 ASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDD--NVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS  556 (743)
Q Consensus       479 s~~~s~l~~~~d~~~~l~~s~~~l~~~~~~l~sGs~D~--~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~  556 (743)
                      ...+..+.|++|+               ++++.++.+.  .+++|+...+                    ....+..|..
T Consensus        42 ~~~v~~~~~spDg---------------~~l~~~~~~~g~~v~v~d~~~~--------------------~~~~~~~~~~   86 (360)
T d1k32a3          42 PLRIRYVRRGGDT---------------KVAFIHGTREGDFLGIYDYRTG--------------------KAEKFEENLG   86 (360)
T ss_dssp             CSCEEEEEECSSS---------------EEEEEEEETTEEEEEEEETTTC--------------------CEEECCCCCC
T ss_pred             CCCEEEEEECCCC---------------CEEEEEECCCCCEEEEEECCCC--------------------CEEEEECCCC
T ss_conf             9988889998999---------------9999999289989999989999--------------------4887508971


Q ss_pred             CEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEE----------CCCEEEEEEC
Q ss_conf             968999928999999995899299997799818899704697779999969999899995----------9990999988
Q 004603          557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS----------ADRTVRVWDT  626 (743)
Q Consensus       557 ~V~si~fspdg~~Lasgs~Dg~V~IWDl~s~~~~~~l~~H~~~V~~vafsp~~~~LvSgs----------~Dg~IriWDl  626 (743)
                      .|.+++|+|++++|++++.++.+++|++.+.+....+..|...+.+++|+|++.+|+.+.          .++.+++||+
T Consensus        87 ~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~  166 (360)
T d1k32a3          87 NVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDM  166 (360)
T ss_dssp             SEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEET
T ss_pred             EEEEEEECCCCCCCCEECCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHCCCEEEEEEECCCCCCCEEECCCCCEEEECC
T ss_conf             27741211454321000111110000012221000000135520230121322566521233121100025654266304


Q ss_pred             CCCCEEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCEE-------EEEEECCCC----EEEE-------
Q ss_conf             8998248998148998589999169990999981799299998999906-------699962471----2463-------
Q 004603          627 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-------AGVFKVCNL----MPII-------  688 (743)
Q Consensus       627 ~~~~~~i~~~~gh~~~V~sl~fsp~g~~lL~Sgs~Dg~IriWDl~s~~~-------v~~l~~~~~----i~~s-------  688 (743)
                      .++.  ...+..+...+..+.|+|+|.. |++++.|+.+++|+......       +..+..+..    ..++       
T Consensus       167 ~~~~--~~~~~~~~~~~~~~~~spdg~~-l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~  243 (360)
T d1k32a3         167 EGRK--IFAATTENSHDYAPAFDADSKN-LYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSE  243 (360)
T ss_dssp             TTTE--EEECSCSSSBEEEEEECTTSCE-EEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCC
T ss_pred             CCCC--EEEECCCCCCCCCCCCCCCCCE-EEEEECCCCEECCCCCCCCEEECCCCCEEEEECCCCCCCCCEECCCCCCCC
T ss_conf             5571--3530354322110012577999-999959985575333544023203641179852469601206877767155


Q ss_pred             -----------------------------CC-------------CCEEEEEECCCEEEEEECCC--------CEEEEEEC
Q ss_conf             -----------------------------07-------------99999996598599995631--------13898731
Q 004603          689 -----------------------------LK-------------GCFILNSIFNCYLLLHRIFL--------NLLSVSEW  718 (743)
Q Consensus       689 -----------------------------~~-------------g~~l~sgs~Dg~i~i~~~~v--------~~l~v~~~  718 (743)
                                                   ++             +.++++++.++.+.+|+...        .+..+.+.
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~v~~~~~S  323 (360)
T d1k32a3         244 AGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKNNLTDLRLS  323 (360)
T ss_dssp             CCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEEEEEEEEEEC
T ss_pred             CCCEEECCCCCCEEECCCCCCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEC
T ss_conf             31136526654001012476752675413898569999735997069996489987999979997498864886879999


Q ss_pred             CCCCEEEEEECCCEEEEECCC
Q ss_conf             899989999699909996799
Q 004603          719 CNPDEISTSSWKDSCCSHREL  739 (743)
Q Consensus       719 ~~~~~i~Sgs~DG~V~iWd~~  739 (743)
                      +++..|++++.||.|++||-.
T Consensus       324 pDG~~l~~~~~Dg~i~v~d~~  344 (360)
T d1k32a3         324 ADRKTVMVRKDDGKIYTFPLE  344 (360)
T ss_dssp             TTSCEEEEEETTSCEEEEESS
T ss_pred             CCCCEEEEEECCCEEEEEECC
T ss_conf             989899999789949999999

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=1.2e-21  Score=147.03  Aligned_cols=203  Identities=13%  Similarity=0.092  Sum_probs=100.1

Q ss_pred             CCEEEEEECCCCEEEEECCCCCCCCC---------------------------CCCCCCCCCCCC-EEEEEEEEECC--C
Q ss_conf             97899822799489982699999877---------------------------434322237784-01257984079--9
Q 004603          506 DRFVDDGSLDDNVESFLSPDDADPRD---------------------------RVGRSAEVGKGF-TFTEFQLIPAS--T  555 (743)
Q Consensus       506 ~~~l~sGs~D~~V~iw~s~~~~~~~~---------------------------~~~~~~~~~~~~-~~~~~~~l~~H--~  555 (743)
                      +.++++|+.|+.|++|..........                           ....+|+..... ..........+  .
T Consensus        69 ~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~  148 (342)
T d1yfqa_          69 DLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK  148 (342)
T ss_dssp             SEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS
T ss_pred             CCEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEECCCCCCCCC
T ss_conf             97899812653114542044320000011111111111111111111110122211102023444330230002430012


Q ss_pred             CCEEEEEECCCCCEEEEEECCCCEEEEECCCCEE---EEEECCCCCCEEEEEECC-CCCEEEEEECCCEEEEEECCCCCE
Q ss_conf             9968999928999999995899299997799818---899704697779999969-999899995999099998889982
Q 004603          556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV---KSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDY  631 (743)
Q Consensus       556 ~~V~si~fspdg~~Lasgs~Dg~V~IWDl~s~~~---~~~l~~H~~~V~~vafsp-~~~~LvSgs~Dg~IriWDl~~~~~  631 (743)
                      ....++.+.+.+..+++++.|+.|++|++.....   ......+...+.++.+.+ ++..+++++.|+.+.+|+......
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~  228 (342)
T d1yfqa_         149 VKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGD  228 (342)
T ss_dssp             SCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCC
T ss_pred             CEEEEEEEECCCCCEEEECCCCCEEEEECCCCCCCCEEEEECCCCCCEEEEEEECCCCCEEEEECCCCEEEEEEECCCCC
T ss_conf             00000100016870246517984788760567634111210254221014676369998788654899599998059864


Q ss_pred             E--------EE------EEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEECC---CCEEEECCCCEE
Q ss_conf             4--------89------981489985899991699909999817992999989999066999624---712463079999
Q 004603          632 S--------LR------TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVC---NLMPIILKGCFI  694 (743)
Q Consensus       632 ~--------i~------~~~gh~~~V~sl~fsp~g~~lL~Sgs~Dg~IriWDl~s~~~v~~l~~~---~~i~~s~~g~~l  694 (743)
                      .        ..      ...+|...|.+++|+|++. +|++|+.||.|++||+++++++..+..+   ..+++++++.++
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~-~lasg~~Dg~v~vWD~~~~~~l~~~~~~~~~~~~~~s~~~~~l  307 (342)
T d1yfqa_         229 DYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHK-FLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNIL  307 (342)
T ss_dssp             STTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTC-CEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEEECSSEE
T ss_pred             EEECCCCCEEEEEEECCCCCCCCCCCEEEEECCCCC-EEEEECCCCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCEE
T ss_conf             011123512565553147776235431599669844-7999879998999999989498870589998799999479999


Q ss_pred             EEEECCCEEEEEECC
Q ss_conf             999659859999563
Q 004603          695 LNSIFNCYLLLHRIF  709 (743)
Q Consensus       695 ~sgs~Dg~i~i~~~~  709 (743)
                      ++++.|+++++|...
T Consensus       308 ~~a~sdd~~~~~~~~  322 (342)
T d1yfqa_         308 CLATSDDTFKTNAAI  322 (342)
T ss_dssp             EEEEECTHHHHCSSS
T ss_pred             EEEECCCCEEEEEEE
T ss_conf             999919927883012

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.87  E-value=4.7e-20  Score=137.28  Aligned_cols=147  Identities=14%  Similarity=0.177  Sum_probs=65.0

Q ss_pred             CCCCCEEEEEECCC-CEEEEECCCCEEEEEEC-CCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCC
Q ss_conf             28999999995899-29999779981889970-46977799999699998999959990999988899824899814899
Q 004603          564 SPDGKLLATGGHDK-KAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHST  641 (743)
Q Consensus       564 spdg~~Lasgs~Dg-~V~IWDl~s~~~~~~l~-~H~~~V~~vafsp~~~~LvSgs~Dg~IriWDl~~~~~~i~~~~gh~~  641 (743)
                      ++++..+++++.|+ .|++|++........+. .|...|++++|+|++.+|++++.|+.|++||+.++......+.+|..
T Consensus       127 ~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~  206 (287)
T d1pgua2         127 SLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTS  206 (287)
T ss_dssp             EECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSS
T ss_pred             ECCCCCEEEECCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC
T ss_conf             21475111000221000210001221000121024785369995167652110111111000000233211000111111


Q ss_pred             CEEEEEEECCC---------CCEEEEEECCCCEEEEECCC-CEEEEEEECCCCEEEECCCCEEEEEECCCEEEEEECCCC
Q ss_conf             85899991699---------90999981799299998999-906699962471246307999999965985999956311
Q 004603          642 TVMSLDFHPSK---------EDLLCSCDNNSEIRYWSINN-GSCAGVFKVCNLMPIILKGCFILNSIFNCYLLLHRIFLN  711 (743)
Q Consensus       642 ~V~sl~fsp~g---------~~lL~Sgs~Dg~IriWDl~s-~~~v~~l~~~~~i~~s~~g~~l~sgs~Dg~i~i~~~~v~  711 (743)
                      .|.+++|+|.+         ..++++++.|+.|++||++. .+++..+.+|..                        .+.
T Consensus       207 ~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~------------------------~V~  262 (287)
T d1pgua2         207 KINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKD------------------------GVN  262 (287)
T ss_dssp             CEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTT------------------------CEE
T ss_pred             CCCEEEECCCCCCCCCCCCCCCEEEEECCCCEEEEEECCCCCEEEEEECCCCC------------------------CEE
T ss_conf             11000001365410012678870276649995999888999758999278789------------------------858


Q ss_pred             EEEEEECCCCCEEEEEECCCEEEEEC
Q ss_conf             38987318999899996999099967
Q 004603          712 LLSVSEWCNPDEISTSSWKDSCCSHR  737 (743)
Q Consensus       712 ~l~v~~~~~~~~i~Sgs~DG~V~iWd  737 (743)
                      .+.+..   .+.+++++.|++|++|+
T Consensus       263 ~v~~~~---~~~l~s~g~D~~v~iW~  285 (287)
T d1pgua2         263 NLLWET---PSTLVSSGADACIKRWN  285 (287)
T ss_dssp             EEEEEE---TTEEEEEETTSCEEEEE
T ss_pred             EEEECC---CCEEEEEECCCEEEEEE
T ss_conf             999989---99899997999299999

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.86  E-value=1.1e-19  Score=135.05  Aligned_cols=145  Identities=19%  Similarity=0.274  Sum_probs=109.2

Q ss_pred             CCCEEEEEECCC-CEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEE-EECCCCCEEEEEECCCCCEEEEEECCCCEEEE
Q ss_conf             997899822799-4899826999998774343222377840125798-40799996899992899999999589929999
Q 004603          505 MDRFVDDGSLDD-NVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQL-IPASTSKVESCHFSPDGKLLATGGHDKKAVLW  582 (743)
Q Consensus       505 ~~~~l~sGs~D~-~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~H~~~V~si~fspdg~~Lasgs~Dg~V~IW  582 (743)
                      .+..++.++.|+ .+++|...                   ....... ...|.+.|++++|+|++.+|++|+.|+.|++|
T Consensus       129 ~~~~~~v~~~~~~~v~~~~~~-------------------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~  189 (287)
T d1pgua2         129 SQNYVAVGLEEGNTIQVFKLS-------------------DLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLY  189 (287)
T ss_dssp             CSSEEEEEETTTSCEEEEETT-------------------EEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             CCCCEEEECCCCCEEEEEECC-------------------CCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCE
T ss_conf             475111000221000210001-------------------2210001210247853699951676521101111110000


Q ss_pred             ECCCCEEEE-EECCCCCCEEEEEECCC----------CCEEEEEECCCEEEEEECCCCCEEEEEEECCCCCEEEEEEECC
Q ss_conf             779981889-97046977799999699----------9989999599909999888998248998148998589999169
Q 004603          583 CTESFTVKS-TLEEHTQWITDVRFSPS----------LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS  651 (743)
Q Consensus       583 Dl~s~~~~~-~l~~H~~~V~~vafsp~----------~~~LvSgs~Dg~IriWDl~~~~~~i~~~~gh~~~V~sl~fsp~  651 (743)
                      |+.+..... .+.+|...|.+++|+|.          +.+|++|+.|++|++||++++...+..+.+|...|++++|+|+
T Consensus       190 d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~  269 (287)
T d1pgua2         190 DLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETP  269 (287)
T ss_dssp             ETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEET
T ss_pred             EECCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCEEEEEECCC
T ss_conf             00233211000111111110000013654100126788702766499959998889997589992787898589999899


Q ss_pred             CCCEEEEEECCCCEEEEEC
Q ss_conf             9909999817992999989
Q 004603          652 KEDLLCSCDNNSEIRYWSI  670 (743)
Q Consensus       652 g~~lL~Sgs~Dg~IriWDl  670 (743)
                      +  .+++++.|+.|++|++
T Consensus       270 ~--~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         270 S--TLVSSGADACIKRWNV  286 (287)
T ss_dssp             T--EEEEEETTSCEEEEEE
T ss_pred             C--EEEEEECCCEEEEEEE
T ss_conf             9--8999979992999997

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.86  E-value=4.1e-19  Score=131.41  Aligned_cols=214  Identities=8%  Similarity=-0.031  Sum_probs=135.0

Q ss_pred             CEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCC
Q ss_conf             78998227994899826999998774343222377840125798407999968999928999999995899299997799
Q 004603          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES  586 (743)
Q Consensus       507 ~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~si~fspdg~~Lasgs~Dg~V~IWDl~s  586 (743)
                      -++++.+.|+.|++|+...                   .+.+..+..|. .+..++|+|||+++++++.|++|++||+.+
T Consensus        33 ~~~V~~~~dg~v~vwD~~t-------------------~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t   92 (426)
T d1hzua2          33 LFSVTLRDAGQIALVDGDS-------------------KKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWA   92 (426)
T ss_dssp             EEEEEETTTTEEEEEETTT-------------------CSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTS
T ss_pred             EEEEEECCCCEEEEEECCC-------------------CCEEEEEECCC-CEEEEEECCCCCEEEEEECCCCEEEEECCC
T ss_conf             8999975999799999999-------------------95999996899-803899989999999995899889997568


Q ss_pred             CEEEEE-----ECCCCCCEEEEEECCCCCEEE-EEECCCEEEEEECCCCCE-----------------------------
Q ss_conf             818899-----704697779999969999899-995999099998889982-----------------------------
Q 004603          587 FTVKST-----LEEHTQWITDVRFSPSLSRLA-TSSADRTVRVWDTENPDY-----------------------------  631 (743)
Q Consensus       587 ~~~~~~-----l~~H~~~V~~vafsp~~~~Lv-Sgs~Dg~IriWDl~~~~~-----------------------------  631 (743)
                      ++....     ..+|...+.+++|+|++++++ ++..++.+++||..+...                             
T Consensus        93 ~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~  172 (426)
T d1hzua2          93 KEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASH  172 (426)
T ss_dssp             SSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECS
T ss_pred             CCEEEEEEEECCCCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEEEEECCCCCCCCEEECCCCCEEEEEECC
T ss_conf             86048999867888764588500268898799963589769998577641257862267773643642788503899878


Q ss_pred             -------------------------EEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEE--------
Q ss_conf             -------------------------48998148998589999169990999981799299998999906699--------
Q 004603          632 -------------------------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV--------  678 (743)
Q Consensus       632 -------------------------~i~~~~gh~~~V~sl~fsp~g~~lL~Sgs~Dg~IriWDl~s~~~v~~--------  678 (743)
                                               ......++...+..+.|.|++.+++++...+..+.+|+..+++.+..        
T Consensus       173 d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (426)
T d1hzua2         173 EHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPH  252 (426)
T ss_dssp             SSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCC
T ss_pred             CCCEEEEECCCCCEEEEEEECCCCCEEEEEECCCCCCEEEEECCCCCEEEEEEECCCCEEEEECCCCCEEEEECCCCCCC
T ss_conf             78788885278976999992466520457756677537613778886788642011000000025562788750587444


Q ss_pred             ----------------------------------------------EECC----CCEEEECCCCEEEE-------EECCC
Q ss_conf             ----------------------------------------------9624----71246307999999-------96598
Q 004603          679 ----------------------------------------------FKVC----NLMPIILKGCFILN-------SIFNC  701 (743)
Q Consensus       679 ----------------------------------------------l~~~----~~i~~s~~g~~l~s-------gs~Dg  701 (743)
                                                                    +.+|    ..+.++|++.++++       ++.++
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~  332 (426)
T d1hzua2         253 PGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQ  332 (426)
T ss_dssp             CSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHT
T ss_pred             CCCEEEEECCCCCCEEEECCCCCCEEEEEECCCCCCCCCCCEEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCCCCC
T ss_conf             34201100698774577415789659885225665203302586898668876367874899861888506798802288


Q ss_pred             EEEEEECCC---------------------CEEEEEECCCCCEEE-EE----ECCCEEEEECCCC
Q ss_conf             599995631---------------------138987318999899-99----6999099967995
Q 004603          702 YLLLHRIFL---------------------NLLSVSEWCNPDEIS-TS----SWKDSCCSHRELY  740 (743)
Q Consensus       702 ~i~i~~~~v---------------------~~l~v~~~~~~~~i~-Sg----s~DG~V~iWd~~~  740 (743)
                      ++++|+...                     .+..+.+.+++.+++ ++    +.++.|++||...
T Consensus       333 tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T  397 (426)
T d1hzua2         333 SVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKT  397 (426)
T ss_dssp             CEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTT
T ss_pred             EEEEEECCCCCCCEEEECCCHHCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCCCEEEEEECCC
T ss_conf             79999898787670895021102567788518987999999999999724888898299999998

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.84  E-value=6.2e-19  Score=130.31  Aligned_cols=187  Identities=6%  Similarity=-0.064  Sum_probs=144.5

Q ss_pred             EEEEEC-CCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCEEEEE
Q ss_conf             899924-8995332368644679978998227994899826999998774343222377840125798407999968999
Q 004603          484 LLMFGS-DGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCH  562 (743)
Q Consensus       484 ~l~~~~-d~~~~l~~s~~~l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~si~  562 (743)
                      ..-|+| ||               ++++.++ ++.|.+|+...+                    .+..+ +|...|.+++
T Consensus         7 ~~~fSP~dG---------------~~~a~~~-~g~v~v~d~~~~--------------------~~~~~-~~~~~v~~~~   49 (360)
T d1k32a3           7 AEDFSPLDG---------------DLIAFVS-RGQAFIQDVSGT--------------------YVLKV-PEPLRIRYVR   49 (360)
T ss_dssp             EEEEEECGG---------------GCEEEEE-TTEEEEECTTSS--------------------BEEEC-SCCSCEEEEE
T ss_pred             CCCCCCCCC---------------CEEEEEE-CCEEEEEECCCC--------------------CEEEC-CCCCCEEEEE
T ss_conf             051468899---------------9999998-996999989999--------------------48991-6999888899


Q ss_pred             ECCCCCEEEEEECCC--CEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECCC
Q ss_conf             928999999995899--299997799818899704697779999969999899995999099998889982489981489
Q 004603          563 FSPDGKLLATGGHDK--KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS  640 (743)
Q Consensus       563 fspdg~~Lasgs~Dg--~V~IWDl~s~~~~~~l~~H~~~V~~vafsp~~~~LvSgs~Dg~IriWDl~~~~~~i~~~~gh~  640 (743)
                      |+||+++|++++.+.  .|++||+++++. ..+..|...|.+++|+|++.+|++++.++.+++|++..+.. ...+..|.
T Consensus        50 ~spDg~~l~~~~~~~g~~v~v~d~~~~~~-~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~  127 (360)
T d1k32a3          50 RGGDTKVAFIHGTREGDFLGIYDYRTGKA-EKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKP-TVIERSRE  127 (360)
T ss_dssp             ECSSSEEEEEEEETTEEEEEEEETTTCCE-EECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCE-EEEEECSS
T ss_pred             ECCCCCEEEEEECCCCCEEEEEECCCCCE-EEEECCCCEEEEEEECCCCCCCCEECCCCCCCCCCCCCCCE-EEEEECCC
T ss_conf             98999999999928998999998999948-87508971277412114543210001111100000122210-00000135


Q ss_pred             CCEEEEEEECCCCCEEEEE---------ECCCCEEEEECCCCEEEEEEECC---CCEEEECCCCEEEEEECCCEEEEEEC
Q ss_conf             9858999916999099998---------17992999989999066999624---71246307999999965985999956
Q 004603          641 TTVMSLDFHPSKEDLLCSC---------DNNSEIRYWSINNGSCAGVFKVC---NLMPIILKGCFILNSIFNCYLLLHRI  708 (743)
Q Consensus       641 ~~V~sl~fsp~g~~lL~Sg---------s~Dg~IriWDl~s~~~v~~l~~~---~~i~~s~~g~~l~sgs~Dg~i~i~~~  708 (743)
                      ..+.+++|+|++..++++.         ..++.+++||+.+++........   ..+.++++|.+|+.++.++.+.+|+.
T Consensus       128 ~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~  207 (360)
T d1k32a3         128 AMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDR  207 (360)
T ss_dssp             SCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECS
T ss_pred             CCCCCHHHCCCEEEEEEECCCCCCCEEECCCCCEEEECCCCCCEEEECCCCCCCCCCCCCCCCCEEEEEECCCCEECCCC
T ss_conf             52023012132256652123312110002565426630455713530354322110012577999999959985575333


Q ss_pred             C
Q ss_conf             3
Q 004603          709 F  709 (743)
Q Consensus       709 ~  709 (743)
                      .
T Consensus       208 ~  208 (360)
T d1k32a3         208 V  208 (360)
T ss_dssp             S
T ss_pred             C
T ss_conf             5

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.83  E-value=3.1e-18  Score=126.01  Aligned_cols=164  Identities=11%  Similarity=0.013  Sum_probs=113.2

Q ss_pred             CCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCEEEEEECCCCCEE-EEEECCCCEE
Q ss_conf             467997899822799489982699999877434322237784012579840799996899992899999-9995899299
Q 004603          502 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLL-ATGGHDKKAV  580 (743)
Q Consensus       502 l~~~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~si~fspdg~~L-asgs~Dg~V~  580 (743)
                      +.+.++++++++.|+.+.+|+...+              +.....++....+|.+.+.+..|+|||++| +++..+++|+
T Consensus        69 fSpDG~~l~~~s~dg~v~~~d~~t~--------------~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~  134 (432)
T d1qksa2          69 LSASGRYLFVIGRDGKVNMIDLWMK--------------EPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYV  134 (432)
T ss_dssp             ECTTSCEEEEEETTSEEEEEETTSS--------------SCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEE
T ss_pred             ECCCCCEEEEECCCCCEEEEEEECC--------------CCEEEEEEECCCCCCCEEEECCCCCCCCEEEEECCCCCEEE
T ss_conf             8899999999828999789981089--------------81288998448898776984321888888999817898279


Q ss_pred             EEECCCCEEEEEECCC-----------CCCEEEEEECCCCCEE-EEEECCCEEEEEECCCCCEEEEEEECCCCCEEEEEE
Q ss_conf             9977998188997046-----------9777999996999989-999599909999888998248998148998589999
Q 004603          581 LWCTESFTVKSTLEEH-----------TQWITDVRFSPSLSRL-ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDF  648 (743)
Q Consensus       581 IWDl~s~~~~~~l~~H-----------~~~V~~vafsp~~~~L-vSgs~Dg~IriWDl~~~~~~i~~~~gh~~~V~sl~f  648 (743)
                      +||..+++++..+..|           ......+.++|++..+ ++...++.|.+||..+..........+...+.++.|
T Consensus       135 i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~  214 (432)
T d1qksa2         135 IMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGL  214 (432)
T ss_dssp             EEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEE
T ss_pred             EEECCCCCCEEEECCCCCCCCCEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCEEEEECCCCCCCCCEE
T ss_conf             99076554225402477643522016888505899878999899998168829999843787522799833675426538


Q ss_pred             ECCCCCEEEEEECCCCEEEEECCCCEEEEEE
Q ss_conf             1699909999817992999989999066999
Q 004603          649 HPSKEDLLCSCDNNSEIRYWSINNGSCAGVF  679 (743)
Q Consensus       649 sp~g~~lL~Sgs~Dg~IriWDl~s~~~v~~l  679 (743)
                      +|+++++++++..+..|.+||..+++.+..+
T Consensus       215 spdg~~~~va~~~~~~v~v~d~~~~~~~~~~  245 (432)
T d1qksa2         215 DGSHRYFITAANARNKLVVIDTKEGKLVAIE  245 (432)
T ss_dssp             CTTSCEEEEEEGGGTEEEEEETTTTEEEEEE
T ss_pred             CCCCCEEEEECCCCCEEEEEECCCCEEEEEE
T ss_conf             8988799995166636777614452688872

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.82  E-value=9.8e-18  Score=122.88  Aligned_cols=181  Identities=9%  Similarity=-0.048  Sum_probs=128.1

Q ss_pred             CEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCC
Q ss_conf             78998227994899826999998774343222377840125798407999968999928999999995899299997799
Q 004603          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES  586 (743)
Q Consensus       507 ~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~si~fspdg~~Lasgs~Dg~V~IWDl~s  586 (743)
                      -++++.+-|+.|.+|+..                   +.+.+..+..+. .+..++|+|||+++++++.|++|++||+.+
T Consensus        33 ~~~v~~~d~g~v~v~D~~-------------------t~~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t   92 (432)
T d1qksa2          33 LFSVTLRDAGQIALIDGS-------------------TYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWM   92 (432)
T ss_dssp             EEEEEETTTTEEEEEETT-------------------TCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTS
T ss_pred             EEEEEECCCCEEEEEECC-------------------CCCEEEEEECCC-CEEEEEECCCCCEEEEECCCCCEEEEEEEC
T ss_conf             899997699979999899-------------------983999973799-713799889999999982899978998108


Q ss_pred             CEE--EEE---ECCCCCCEEEEEECCCCCEE-EEEECCCEEEEEECCCCCEEEEEEEC-----------CCCCEEEEEEE
Q ss_conf             818--899---70469777999996999989-99959990999988899824899814-----------89985899991
Q 004603          587 FTV--KST---LEEHTQWITDVRFSPSLSRL-ATSSADRTVRVWDTENPDYSLRTFTG-----------HSTTVMSLDFH  649 (743)
Q Consensus       587 ~~~--~~~---l~~H~~~V~~vafsp~~~~L-vSgs~Dg~IriWDl~~~~~~i~~~~g-----------h~~~V~sl~fs  649 (743)
                      .+.  ...   ..+|...+.+..|+|++++| +++..+++|++||..++.. +..+..           +......+.++
T Consensus        93 ~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~s  171 (432)
T d1qksa2          93 KEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEP-KKIQSTRGMTYDEQEYHPEPRVAAILAS  171 (432)
T ss_dssp             SSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCE-EEEEECCEECTTTCCEESCCCEEEEEEC
T ss_pred             CCCEEEEEEECCCCCCCEEEECCCCCCCCEEEEECCCCCEEEEEECCCCCC-EEEECCCCCCCCCEECCCCCCEEEEEEC
T ss_conf             981288998448898776984321888888999817898279990765542-2540247764352201688850589987


Q ss_pred             CCCCCEEEEEECCCCEEEEECCCCEEEEEEE--CC---CCEEEECCCCEEEEEECCC-EEEEEEC
Q ss_conf             6999099998179929999899990669996--24---7124630799999996598-5999956
Q 004603          650 PSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--VC---NLMPIILKGCFILNSIFNC-YLLLHRI  708 (743)
Q Consensus       650 p~g~~lL~Sgs~Dg~IriWDl~s~~~v~~l~--~~---~~i~~s~~g~~l~sgs~Dg-~i~i~~~  708 (743)
                      |++..++++...++.|.+||..+.+......  ..   ..+.++++|+++++++.++ .+.+++.
T Consensus       172 ~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~  236 (432)
T d1qksa2         172 HYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDT  236 (432)
T ss_dssp             SSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEET
T ss_pred             CCCCEEEEEECCCCEEEEEECCCCCCCEEEEECCCCCCCCCEECCCCCEEEEECCCCCEEEEEEC
T ss_conf             89998999981688299998437875227998336754265388988799995166636777614

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.79  E-value=3e-15  Score=107.45  Aligned_cols=210  Identities=16%  Similarity=0.128  Sum_probs=132.5

Q ss_pred             CEE-EEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCEEEEEECCCCCEEE-EEECCCCEEEEEC
Q ss_conf             789-98227994899826999998774343222377840125798407999968999928999999-9958992999977
Q 004603          507 RFV-DDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLA-TGGHDKKAVLWCT  584 (743)
Q Consensus       507 ~~l-~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~si~fspdg~~La-sgs~Dg~V~IWDl  584 (743)
                      +++ ++++.++.|.+|+....                   ..+..+..+.. +..+.|++++..++ ++..++.+.+|+.
T Consensus        44 ~~l~v~~~~~~~i~v~d~~t~-------------------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (301)
T d1l0qa2          44 TKVYVANAHSNDVSIIDTATN-------------------NVIATVPAGSS-PQGVAVSPDGKQVYVTNMASSTLSVIDT  103 (301)
T ss_dssp             SEEEEEEGGGTEEEEEETTTT-------------------EEEEEEECSSS-EEEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred             CEEEEEECCCCEEEEEECCCC-------------------CEEEEEECCCC-CCCCCCCCCCCCCCCCCCCCCEEEECCC
T ss_conf             999999789998999999989-------------------41032000246-4311000111111111111100110012


Q ss_pred             CCCEEEEEECCCCCCEEEEEECCCCCEEE-EEECCCEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCCCEEEEEECCC
Q ss_conf             99818899704697779999969999899-99599909999888998248998148998589999169990999981799
Q 004603          585 ESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS  663 (743)
Q Consensus       585 ~s~~~~~~l~~H~~~V~~vafsp~~~~Lv-Sgs~Dg~IriWDl~~~~~~i~~~~gh~~~V~sl~fsp~g~~lL~Sgs~Dg  663 (743)
                      .+.+....+..+ ..+.+++|+|++..++ ++..+..+.+|+..+... +..+. +...+..+.++|++..+++++..++
T Consensus       104 ~~~~~~~~~~~~-~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  180 (301)
T d1l0qa2         104 TSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAV-INTVS-VGRSPKGIAVTPDGTKVYVANFDSM  180 (301)
T ss_dssp             TTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE-EEEEE-CCSSEEEEEECTTSSEEEEEETTTT
T ss_pred             CCCEEEEECCCC-CCCEEEEEECCCCEEEEEECCCCCEEEEECCCCCE-EEECC-CCCCCEEEEEECCCCCEEEECCCCC
T ss_conf             430243202444-44237876058971554201111001100014630-35315-6788428886046540131012111


Q ss_pred             CEEEEECCCCEEEEEEECCC---CEEEECCCCEEEEEECC---CEEEEEECCC-----------CEEEEEECCCCCEE-E
Q ss_conf             29999899990669996247---12463079999999659---8599995631-----------13898731899989-9
Q 004603          664 EIRYWSINNGSCAGVFKVCN---LMPIILKGCFILNSIFN---CYLLLHRIFL-----------NLLSVSEWCNPDEI-S  725 (743)
Q Consensus       664 ~IriWDl~s~~~v~~l~~~~---~i~~s~~g~~l~sgs~D---g~i~i~~~~v-----------~~l~v~~~~~~~~i-~  725 (743)
                      .+.+|+....+....+....   .+.+.+++.+++.+..+   +.+.+|+...           ....+.+.+++.++ +
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~va~spdg~~l~v  260 (301)
T d1l0qa2         181 SISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYV  260 (301)
T ss_dssp             EEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEE
T ss_pred             CCCCCCCCCEEEEECCCCCCCCCEEECCCCCCCCCCCCCCCEEEEEEEEECCCCEEEEEECCCCCEEEEEEECCCCEEEE
T ss_conf             11111111000111013357750311011110111100210000232365699819999848998779999189899999


Q ss_pred             EEECCCEEEEECCC
Q ss_conf             99699909996799
Q 004603          726 TSSWKDSCCSHREL  739 (743)
Q Consensus       726 Sgs~DG~V~iWd~~  739 (743)
                      +++.|++|++||-.
T Consensus       261 a~~~~~~i~v~D~~  274 (301)
T d1l0qa2         261 ALSFCNTVSVIDTA  274 (301)
T ss_dssp             EETTTTEEEEEETT
T ss_pred             EECCCCEEEEEECC
T ss_conf             98999969999999

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.76  E-value=6.6e-15  Score=105.35  Aligned_cols=149  Identities=13%  Similarity=0.111  Sum_probs=91.0

Q ss_pred             CEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEEC--CCCCEEEEEECCCCCEE-EEEECCCCEEEEE
Q ss_conf             78998227994899826999998774343222377840125798407--99996899992899999-9995899299997
Q 004603          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPA--STSKVESCHFSPDGKLL-ATGGHDKKAVLWC  583 (743)
Q Consensus       507 ~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--H~~~V~si~fspdg~~L-asgs~Dg~V~IWD  583 (743)
                      +++++++.|++|.+|+....                   +.+..+..  +...+.+++|+|||+++ ++++.++.|.+||
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~-------------------~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D   62 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKM-------------------AVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKID   62 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTT-------------------EEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             EEEEEECCCCEEEEEECCCC-------------------EEEEEEECCCCCCCCCEEEECCCCCEEEEEECCCCEEEEEE
T ss_conf             69999767998999999999-------------------49999987788998237999999899999978999499999


Q ss_pred             CCCCEEEEEECCCCC-----CEEEEEECCCCCEEEEEE------------CCCEEEEEECCCCCEEEEEEECCCCCEEEE
Q ss_conf             799818899704697-----779999969999899995------------999099998889982489981489985899
Q 004603          584 TESFTVKSTLEEHTQ-----WITDVRFSPSLSRLATSS------------ADRTVRVWDTENPDYSLRTFTGHSTTVMSL  646 (743)
Q Consensus       584 l~s~~~~~~l~~H~~-----~V~~vafsp~~~~LvSgs------------~Dg~IriWDl~~~~~~i~~~~gh~~~V~sl  646 (743)
                      +.+++.+..+..+..     .+..++|+|++.+++++.            .+..+.+||..+... +..+. +...+.++
T Consensus        63 ~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~-~~~~~~~~  140 (337)
T d1pbyb_          63 LVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSR-RKAFE-APRQITML  140 (337)
T ss_dssp             TTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEE-EEEEE-CCSSCCCE
T ss_pred             CCCCCEEEEEECCCCCCCCCCEEEEEECCCCCEEEEEECCCCCEEEECCCCCCCEEECCCCCCEE-EEECC-CCCCCEEE
T ss_conf             99992988872477731254025489868775799950477620342034555212035667759-88414-56872189


Q ss_pred             EEECCCCCEEEEEECCCCEEEEECCCCEEEEEE
Q ss_conf             991699909999817992999989999066999
Q 004603          647 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF  679 (743)
Q Consensus       647 ~fsp~g~~lL~Sgs~Dg~IriWDl~s~~~v~~l  679 (743)
                      +|+|++..++ +++  +.+.+||..+++....+
T Consensus       141 ~~s~dg~~l~-~~~--~~~~~~d~~~~~~~~~~  170 (337)
T d1pbyb_         141 AWARDGSKLY-GLG--RDLHVMDPEAGTLVEDK  170 (337)
T ss_dssp             EECTTSSCEE-EES--SSEEEEETTTTEEEEEE
T ss_pred             EECCCCCEEE-EEC--CCCCEEEEECCCEEEEE
T ss_conf             9868888899-971--77505663037278886

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.72  E-value=2e-15  Score=108.56  Aligned_cols=160  Identities=8%  Similarity=0.047  Sum_probs=83.8

Q ss_pred             CCCCCEEEEEECCCCCEEEEEE-CCCCEEEEECCCCEEEEEECCCC--CCEEEEEECCCCC-EE--EEEECCCEEEEEEC
Q ss_conf             7999968999928999999995-89929999779981889970469--7779999969999-89--99959990999988
Q 004603          553 ASTSKVESCHFSPDGKLLATGG-HDKKAVLWCTESFTVKSTLEEHT--QWITDVRFSPSLS-RL--ATSSADRTVRVWDT  626 (743)
Q Consensus       553 ~H~~~V~si~fspdg~~Lasgs-~Dg~V~IWDl~s~~~~~~l~~H~--~~V~~vafsp~~~-~L--vSgs~Dg~IriWDl  626 (743)
                      .+...+..+.|+|++++++++. .+..+.+++..+.+.+..+....  .......+..... .+  ++.+.|+.+.+|+.
T Consensus       204 ~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~  283 (426)
T d1hzua2         204 GAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGT  283 (426)
T ss_dssp             ECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEEC
T ss_pred             CCCCCCEEEEECCCCCEEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCEEEEECCCCCCEEEECCCCCCEEEEEEC
T ss_conf             66775376137788867886420110000000255627887505874443420110069877457741578965988522


Q ss_pred             CCCC------EEEEEEECCCCCEEEEEEECCCCCEEE------EEECCCCEEEEECCCCEEEEEEECC------------
Q ss_conf             8998------248998148998589999169990999------9817992999989999066999624------------
Q 004603          627 ENPD------YSLRTFTGHSTTVMSLDFHPSKEDLLC------SCDNNSEIRYWSINNGSCAGVFKVC------------  682 (743)
Q Consensus       627 ~~~~------~~i~~~~gh~~~V~sl~fsp~g~~lL~------Sgs~Dg~IriWDl~s~~~v~~l~~~------------  682 (743)
                      ....      ....++.+|...+.+++|+|++..+++      +++.|++|++||+.++++..++..+            
T Consensus       284 ~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~r  363 (426)
T d1hzua2         284 DPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKR  363 (426)
T ss_dssp             CTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCC
T ss_pred             CCCCCCCCCCEEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCCCCCEEEEEECCCCCCCEEEECCCHHCCCCCCCCC
T ss_conf             56652033025868986688763678748998618885067988022887999989878767089502110256778851


Q ss_pred             -CCEEEECCCCEEEEE-----ECCCEEEEEECCCCE
Q ss_conf             -712463079999999-----659859999563113
Q 004603          683 -NLMPIILKGCFILNS-----IFNCYLLLHRIFLNL  712 (743)
Q Consensus       683 -~~i~~s~~g~~l~sg-----s~Dg~i~i~~~~v~~  712 (743)
                       ..+.|+|+|++++..     +.++.|++|+.....
T Consensus       364 v~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k  399 (426)
T d1hzua2         364 VVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLK  399 (426)
T ss_dssp             EEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTE
T ss_pred             EEEEEECCCCCEEEEEEECCCCCCCEEEEEECCCCE
T ss_conf             898799999999999972488889829999999873

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.69  E-value=1.8e-13  Score=96.41  Aligned_cols=106  Identities=9%  Similarity=0.060  Sum_probs=63.9

Q ss_pred             CCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEE-CCCCCEEEEEECCCCCEEE-EEECCCCEEEE
Q ss_conf             997899822799489982699999877434322237784012579840-7999968999928999999-99589929999
Q 004603          505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP-ASTSKVESCHFSPDGKLLA-TGGHDKKAVLW  582 (743)
Q Consensus       505 ~~~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~H~~~V~si~fspdg~~La-sgs~Dg~V~IW  582 (743)
                      -++++++++.|+.|.+|+...+                   +.+.++. .|...+.+++|+|||++++ ++..++.|++|
T Consensus         7 ~~~~l~~~~~~~~v~v~D~~t~-------------------~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~   67 (346)
T d1jmxb_           7 GHEYMIVTNYPNNLHVVDVASD-------------------TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGI   67 (346)
T ss_dssp             TCEEEEEEETTTEEEEEETTTT-------------------EEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             CCCEEEEECCCCEEEEEECCCC-------------------CEEEEEECCCCCCCCEEEECCCCCEEEEEECCCCCEEEE
T ss_conf             9969999869997999999999-------------------899999948999704599978989999997899939999


Q ss_pred             ECCCCEEEEEECCCC------CCEEEEEECCCCCEEEEEE------------CCCEEEEEECCCC
Q ss_conf             779981889970469------7779999969999899995------------9990999988899
Q 004603          583 CTESFTVKSTLEEHT------QWITDVRFSPSLSRLATSS------------ADRTVRVWDTENP  629 (743)
Q Consensus       583 Dl~s~~~~~~l~~H~------~~V~~vafsp~~~~LvSgs------------~Dg~IriWDl~~~  629 (743)
                      |+.+++.+..+....      ..+..++|+|++.++++++            .+..+.+|+..++
T Consensus        68 d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~  132 (346)
T d1jmxb_          68 DLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADG  132 (346)
T ss_dssp             ETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGG
T ss_pred             ECCCCEEEEEECCCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCEEEEECCCCCEEEEEECCCC
T ss_conf             67567131231036543454774179999058888999705775215651467624899852563

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.65  E-value=5e-13  Score=93.69  Aligned_cols=181  Identities=14%  Similarity=0.118  Sum_probs=104.1

Q ss_pred             CEE-EEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEECC-----CCCEEEEEECCCCCEEEEEE------
Q ss_conf             789-982279948998269999987743432223778401257984079-----99968999928999999995------
Q 004603          507 RFV-DDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAS-----TSKVESCHFSPDGKLLATGG------  574 (743)
Q Consensus       507 ~~l-~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H-----~~~V~si~fspdg~~Lasgs------  574 (743)
                      +++ ++++.++.|.+|+...+.                   .+..+..+     ...+..++|+|+++++++++      
T Consensus        46 ~~l~v~~~~~~~v~v~D~~t~~-------------------~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~  106 (337)
T d1pbyb_          46 RIAYATVNKSESLVKIDLVTGE-------------------TLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLE  106 (337)
T ss_dssp             SEEEEEETTTTEEEEEETTTCC-------------------EEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEEC
T ss_pred             CEEEEEECCCCEEEEEECCCCC-------------------EEEEEECCCCCCCCCCEEEEEECCCCCEEEEEECCCCCE
T ss_conf             9999997899949999999992-------------------988872477731254025489868775799950477620


Q ss_pred             ------CCCCEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECC------------------------------
Q ss_conf             ------89929999779981889970469777999996999989999599------------------------------
Q 004603          575 ------HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD------------------------------  618 (743)
Q Consensus       575 ------~Dg~V~IWDl~s~~~~~~l~~H~~~V~~vafsp~~~~LvSgs~D------------------------------  618 (743)
                            .+..+.+||..+.+....+.. ...+.+++|+|++.++++++.+                              
T Consensus       107 ~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  185 (337)
T d1pbyb_         107 LTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDV  185 (337)
T ss_dssp             SSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEESSSEEEEETTTTEEEEEECSTTTTTTTBCCCBC
T ss_pred             EEECCCCCCCEEECCCCCCEEEEECCC-CCCCEEEEECCCCCEEEEECCCCCEEEEECCCEEEEEECCCCCCCCEECCCC
T ss_conf             342034555212035667759884145-6872189986888889997177505663037278886147754331135776


Q ss_pred             ---------------------------------CEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCE
Q ss_conf             ---------------------------------90999988899824899814899858999916999099998179929
Q 004603          619 ---------------------------------RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI  665 (743)
Q Consensus       619 ---------------------------------g~IriWDl~~~~~~i~~~~gh~~~V~sl~fsp~g~~lL~Sgs~Dg~I  665 (743)
                                                       +.+.+|++..+......+..+...+..+.+++++. +++.+  ++.|
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~i  262 (337)
T d1pbyb_         186 LAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKT-RAFGA--YNVL  262 (337)
T ss_dssp             CCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSS-EEEEE--ESEE
T ss_pred             CEEECCCCCCCEEEEEEEEEEECCCEEEECCCCCCEEEEECCCCCEEEEEECCCCCCEEEEEECCCCE-EEEEC--CCCE
T ss_conf             31401466531246632444103660454036761799986888588898328875058887426613-99973--5528


Q ss_pred             EEEECCCCEEEEEEECC---CCEEEECCCCEEEEEECCCEEEEEECCC
Q ss_conf             99989999066999624---7124630799999996598599995631
Q 004603          666 RYWSINNGSCAGVFKVC---NLMPIILKGCFILNSIFNCYLLLHRIFL  710 (743)
Q Consensus       666 riWDl~s~~~v~~l~~~---~~i~~s~~g~~l~sgs~Dg~i~i~~~~v  710 (743)
                      ++||+.+++++..+...   ..++|+++|.++++++.++.|.+|+...
T Consensus       263 ~v~d~~~~~~~~~~~~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t  310 (337)
T d1pbyb_         263 ESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAET  310 (337)
T ss_dssp             EEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBSSEEEEEETTT
T ss_pred             EEEECCCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCC
T ss_conf             999898896999974899889999978999999994999299999998

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.63  E-value=5.1e-12  Score=87.45  Aligned_cols=162  Identities=15%  Similarity=0.110  Sum_probs=119.1

Q ss_pred             EEEEEEECCCCCEEEEEECCCCCEEE-EEECCCCEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECC-CEEEE
Q ss_conf             25798407999968999928999999-99589929999779981889970469777999996999989999599-90999
Q 004603          546 TEFQLIPASTSKVESCHFSPDGKLLA-TGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD-RTVRV  623 (743)
Q Consensus       546 ~~~~~l~~H~~~V~si~fspdg~~La-sgs~Dg~V~IWDl~s~~~~~~l~~H~~~V~~vafsp~~~~LvSgs~D-g~Iri  623 (743)
                      .....+..+ ..+.++.|+|++..++ ++..++.+.+|+..+...+..+..+ ..+.+++++|++..+++++.+ +.+.+
T Consensus       107 ~~~~~~~~~-~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (301)
T d1l0qa2         107 TVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISV  184 (301)
T ss_dssp             EEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             EEEEECCCC-CCCEEEEEECCCCEEEEEECCCCCEEEEECCCCCEEEECCCC-CCCEEEEEECCCCCEEEECCCCCCCCC
T ss_conf             243202444-442378760589715542011110011000146303531567-884288860465401310121111111


Q ss_pred             EECCCCCEEEEEEECCCCCEEEEEEECCCCCEEEEEE--CCCCEEEEECCCCEEEEEEECC---CCEEEECCCCEEE-EE
Q ss_conf             9888998248998148998589999169990999981--7992999989999066999624---7124630799999-99
Q 004603          624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD--NNSEIRYWSINNGSCAGVFKVC---NLMPIILKGCFIL-NS  697 (743)
Q Consensus       624 WDl~~~~~~i~~~~gh~~~V~sl~fsp~g~~lL~Sgs--~Dg~IriWDl~s~~~v~~l~~~---~~i~~s~~g~~l~-sg  697 (743)
                      |+.... ....... ....+..++|++++..+++++.  .++.|++||+.+++++..+..+   ..++++++|.+++ ++
T Consensus       185 ~~~~~~-~~~~~~~-~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~va~spdg~~l~va~  262 (301)
T d1l0qa2         185 IDTVTN-SVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVAL  262 (301)
T ss_dssp             EETTTT-EEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEE
T ss_pred             CCCCCE-EEEECCC-CCCCCCEEECCCCCCCCCCCCCCCEEEEEEEEECCCCEEEEEECCCCCEEEEEEECCCCEEEEEE
T ss_conf             111100-0111013-35775031101111011110021000023236569981999984899877999918989999998


Q ss_pred             ECCCEEEEEECCCC
Q ss_conf             65985999956311
Q 004603          698 IFNCYLLLHRIFLN  711 (743)
Q Consensus       698 s~Dg~i~i~~~~v~  711 (743)
                      +.++.|.+|+....
T Consensus       263 ~~~~~i~v~D~~t~  276 (301)
T d1l0qa2         263 SFCNTVSVIDTATN  276 (301)
T ss_dssp             TTTTEEEEEETTTT
T ss_pred             CCCCEEEEEECCCC
T ss_conf             99996999999999

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.57  E-value=2.4e-12  Score=89.52  Aligned_cols=214  Identities=11%  Similarity=0.092  Sum_probs=109.9

Q ss_pred             CEE-EEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCEEEEEECCCCCEEEEEEC-CCCEEEEEC
Q ss_conf             789-982279948998269999987743432223778401257984079999689999289999999958-992999977
Q 004603          507 RFV-DDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH-DKKAVLWCT  584 (743)
Q Consensus       507 ~~l-~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~si~fspdg~~Lasgs~-Dg~V~IWDl  584 (743)
                      ++| +++..|+.|.+|......               ........ ..+...+..++|+|+|++|++++. ++.|.+|+.
T Consensus        49 ~~L~v~~~~d~~i~~~~i~~~~---------------~~~~~~~~-~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~  112 (333)
T d1ri6a_          49 RYLYVGVRPEFRVLAYRIAPDD---------------GALTFAAE-SALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRL  112 (333)
T ss_dssp             SEEEEEETTTTEEEEEEECTTT---------------CCEEEEEE-EECSSCCSEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             CEEEEEECCCCEEEEEEEECCC---------------CCEEEEEE-CCCCCCCEEEEECCCCCEEEECCCCCCCEEEECC
T ss_conf             9999997789969999996898---------------70798530-1369985499995999887420568883022001


Q ss_pred             CCCEEEE--EECCCCCCEEEEEECCCCCEEEEEEC-CCEEEEEECCCCCEEEEE-----EECCCCCEEEEEEECCCCCEE
Q ss_conf             9981889--97046977799999699998999959-990999988899824899-----814899858999916999099
Q 004603          585 ESFTVKS--TLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTENPDYSLRT-----FTGHSTTVMSLDFHPSKEDLL  656 (743)
Q Consensus       585 ~s~~~~~--~l~~H~~~V~~vafsp~~~~LvSgs~-Dg~IriWDl~~~~~~i~~-----~~gh~~~V~sl~fsp~g~~lL  656 (743)
                      .......  ....+...+.++.++|++.++++++. +..|.+|+..........     .......+..+.|++++..++
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~  192 (333)
T d1ri6a_         113 EDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAY  192 (333)
T ss_dssp             ETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEE
T ss_pred             CCCCCEECCCCCCCCCCCEEEEEEECCEEEECCCCCCCEEEEEEECCCCCCEEEECEEEEEECCCCCCEEEEECCCEEEE
T ss_conf             11000000100377853149886301013102565542056897326874100100013340388752799960201478


Q ss_pred             EEEECCCCEEEEECCCCE----EEEEEEC----------CCCEEEECCCCEEEEEE-CCCEEEEEECCC-----------
Q ss_conf             998179929999899990----6699962----------47124630799999996-598599995631-----------
Q 004603          657 CSCDNNSEIRYWSINNGS----CAGVFKV----------CNLMPIILKGCFILNSI-FNCYLLLHRIFL-----------  710 (743)
Q Consensus       657 ~Sgs~Dg~IriWDl~s~~----~v~~l~~----------~~~i~~s~~g~~l~sgs-~Dg~i~i~~~~v-----------  710 (743)
                      ++....+...+|+.....    ....+..          ...+.+++++.+++... .++.+.+|....           
T Consensus       193 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (333)
T d1ri6a_         193 CVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQ  272 (333)
T ss_dssp             EEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEE
T ss_pred             EECCCCCCEEEEEECCCCCCEEEEEEEEEEECCCCCCCCCEEEEEECCCCCEEEECCCCCEEEEEEECCCCCEEEEEEEE
T ss_conf             62046672178851035552021002234306877655312689951567205504568827878873999789999996


Q ss_pred             ----CEEEEEECCCCCEEEEEE-CCCEEEEE
Q ss_conf             ----138987318999899996-99909996
Q 004603          711 ----NLLSVSEWCNPDEISTSS-WKDSCCSH  736 (743)
Q Consensus       711 ----~~l~v~~~~~~~~i~Sgs-~DG~V~iW  736 (743)
                          ....+.+.+++.++++++ .++.|.+|
T Consensus       273 ~~~~~p~~~a~spDGk~l~va~~~~~~v~v~  303 (333)
T d1ri6a_         273 PTETQPRGFNVDHSGKYLIAAGQKSHHISVY  303 (333)
T ss_dssp             ECSSSCCCEEECTTSSEEEEECTTTCEEEEE
T ss_pred             CCCCCEEEEEEECCCCEEEEEECCCCEEEEE
T ss_conf             7899762899907989999998899939999

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.56  E-value=7.6e-12  Score=86.36  Aligned_cols=50  Identities=10%  Similarity=-0.063  Sum_probs=21.6

Q ss_pred             ECCCCEEEEECCCCEEEEEEECC---CCEEEECCCCE--EEEEECCCEEEEEECC
Q ss_conf             17992999989999066999624---71246307999--9999659859999563
Q 004603          660 DNNSEIRYWSINNGSCAGVFKVC---NLMPIILKGCF--ILNSIFNCYLLLHRIF  709 (743)
Q Consensus       660 s~Dg~IriWDl~s~~~v~~l~~~---~~i~~s~~g~~--l~sgs~Dg~i~i~~~~  709 (743)
                      ..++.|.+||..+++.+..+...   ..+.|+++|++  +++++.|++|.+|+..
T Consensus       295 ~~~~~v~~~d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~  349 (373)
T d2madh_         295 AAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAG  349 (373)
T ss_pred             CCCCEEEEEECCCCCEEEEECCCCCEEEEEECCCCCEEEEEEECCCCEEEEEECC
T ss_conf             5898699998999969898668998258999989998999996799929999999

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.55  E-value=1e-12  Score=91.77  Aligned_cols=148  Identities=10%  Similarity=-0.054  Sum_probs=88.3

Q ss_pred             EEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCCCEEEEEECCCC--------------------------CE
Q ss_conf             6899992899999999589929999779981889970469777999996999--------------------------98
Q 004603          558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL--------------------------SR  611 (743)
Q Consensus       558 V~si~fspdg~~Lasgs~Dg~V~IWDl~s~~~~~~l~~H~~~V~~vafsp~~--------------------------~~  611 (743)
                      +..+.+++++.+++++   ..+.+|++.+++.+..+..+.. +..+.++|++                          ..
T Consensus       147 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (346)
T d1jmxb_         147 VYLMRAADDGSLYVAG---PDIYKMDVKTGKYTVALPLRNW-NRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQD  222 (346)
T ss_dssp             CCCEEECTTSCEEEES---SSEEEECTTTCCEEEEECSTTC-CCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC------
T ss_pred             EEEEEECCCCEEEEEC---CCCEEEECCCCCEEEEEECCCC-CCCEEEECCCCEEEEEECCCCCEEEEEEEEEECCCCEE
T ss_conf             3999952787899847---9626998069978999964898-66237712552899986499816765123111267325


Q ss_pred             EEEEECCCEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEECC---CCEEEE
Q ss_conf             99995999099998889982489981489985899991699909999817992999989999066999624---712463
Q 004603          612 LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVC---NLMPII  688 (743)
Q Consensus       612 LvSgs~Dg~IriWDl~~~~~~i~~~~gh~~~V~sl~fsp~g~~lL~Sgs~Dg~IriWDl~s~~~v~~l~~~---~~i~~s  688 (743)
                      ++++..+..+.+||+.++......+..+...+..+.+.+++..++ ... ++.|++||+.+++.+..+...   ..++|+
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~v~v~d~~~~~~~~~~~~~~~~~~va~s  300 (346)
T d1jmxb_         223 PATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQI-YGV-LNRLAKYDLKQRKLIKAANLDHTYYCVAFD  300 (346)
T ss_dssp             -CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEE-EEE-ESEEEEEETTTTEEEEEEECSSCCCEEEEC
T ss_pred             EEECCCCCEEEEEECCCCCEEEEEEECCCCEEEEEEEECCCCEEE-EEC-CCEEEEEECCCCCEEEEECCCCCEEEEEEC
T ss_conf             754047834999977788368787631566068889717997899-942-983899989999399997499977899996


Q ss_pred             CCCCEEEEEECCCEEEEEECCCC
Q ss_conf             07999999965985999956311
Q 004603          689 LKGCFILNSIFNCYLLLHRIFLN  711 (743)
Q Consensus       689 ~~g~~l~sgs~Dg~i~i~~~~v~  711 (743)
                      ++|.++++++.|+.|.+|+....
T Consensus       301 ~DG~~l~v~~~d~~v~v~D~~t~  323 (346)
T d1jmxb_         301 KKGDKLYLGGTFNDLAVFNPDTL  323 (346)
T ss_dssp             SSSSCEEEESBSSEEEEEETTTT
T ss_pred             CCCCEEEEEECCCCEEEEECCCC
T ss_conf             89999999948992999999658

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.54  E-value=4.4e-11  Score=81.68  Aligned_cols=190  Identities=14%  Similarity=0.126  Sum_probs=120.5

Q ss_pred             CCCCCEEEEEEC-CCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCEEEEEECCCCCEEEEEEC-CCCEE
Q ss_conf             679978998227-9948998269999987743432223778401257984079999689999289999999958-99299
Q 004603          503 TDMDRFVDDGSL-DDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH-DKKAV  580 (743)
Q Consensus       503 ~~~~~~l~sGs~-D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~si~fspdg~~Lasgs~-Dg~V~  580 (743)
                      .+.++++..++. +..+.+|....                 ...........+...+.++.++|+++.+++++. +..|.
T Consensus        91 spDg~~l~v~~~~~~~v~~~~~~~-----------------~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~  153 (333)
T d1ri6a_          91 DHQGQFVFVGSYNAGNVSVTRLED-----------------GLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRIC  153 (333)
T ss_dssp             CTTSSEEEEEETTTTEEEEEEEET-----------------TEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEE
T ss_pred             CCCCCEEEECCCCCCCEEEECCCC-----------------CCCEECCCCCCCCCCCEEEEEEECCEEEECCCCCCCEEE
T ss_conf             599988742056888302200111-----------------000000100377853149886301013102565542056


Q ss_pred             EEECCCCEEEE------EECCCCCCEEEEEECCCCCEEEEEE-CCCEEEEEECCCCCEEEE---EEE------CCCCCEE
Q ss_conf             99779981889------9704697779999969999899995-999099998889982489---981------4899858
Q 004603          581 LWCTESFTVKS------TLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENPDYSLR---TFT------GHSTTVM  644 (743)
Q Consensus       581 IWDl~s~~~~~------~l~~H~~~V~~vafsp~~~~LvSgs-~Dg~IriWDl~~~~~~i~---~~~------gh~~~V~  644 (743)
                      +|+........      ...........++|++++..++... ..+...+|++......+.   ...      .....+.
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (333)
T d1ri6a_         154 LFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAA  233 (333)
T ss_dssp             EEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEE
T ss_pred             EEEECCCCCCEEEECEEEEEECCCCCCEEEEECCCEEEEEECCCCCCEEEEEECCCCCCEEEEEEEEEEECCCCCCCCCE
T ss_conf             89732687410010001334038875279996020147862046672178851035552021002234306877655312


Q ss_pred             EEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEEC-------CCCEEEECCCCEEEEEE-CCCEEEEEECC
Q ss_conf             9999169990999981799299998999906699962-------47124630799999996-59859999563
Q 004603          645 SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKV-------CNLMPIILKGCFILNSI-FNCYLLLHRIF  709 (743)
Q Consensus       645 sl~fsp~g~~lL~Sgs~Dg~IriWDl~s~~~v~~l~~-------~~~i~~s~~g~~l~sgs-~Dg~i~i~~~~  709 (743)
                      .+.+++++..+++++..++.+.+|++........+..       ...++|+|+|++|++++ .++.|.+|+..
T Consensus       234 ~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id  306 (333)
T d1ri6a_         234 DIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIV  306 (333)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred             EEEEECCCCCEEEECCCCCEEEEEEECCCCCEEEEEEEECCCCCEEEEEEECCCCEEEEEECCCCEEEEEEEE
T ss_conf             6899515672055045688278788739997899999967899762899907989999998899939999997

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.53  E-value=1.9e-11  Score=83.94  Aligned_cols=174  Identities=8%  Similarity=-0.134  Sum_probs=101.7

Q ss_pred             EEEEECCCCCEEEEEE--CCCCEEEEECCCCEEEEEECCCCCCEEEEEECCCCCE-EEEEECCCEEEEEECCCCCEEEEE
Q ss_conf             8999928999999995--8992999977998188997046977799999699998-999959990999988899824899
Q 004603          559 ESCHFSPDGKLLATGG--HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSR-LATSSADRTVRVWDTENPDYSLRT  635 (743)
Q Consensus       559 ~si~fspdg~~Lasgs--~Dg~V~IWDl~s~~~~~~l~~H~~~V~~vafsp~~~~-LvSgs~Dg~IriWDl~~~~~~i~~  635 (743)
                      ..+.|+++++.++...  .+..+.+|+....+....    ...+.++.|+|++.. +++.+.|+.+.+|+...... ...
T Consensus       128 ~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~-~~~  202 (373)
T d2madh_         128 WMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQL----LSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAA-GAG  202 (373)
T ss_pred             CCEEEEECCCCEEEEEECCCCCEEEEECCCCEEEEE----ECCCEEEEEECCCCCEEEEECCCCEEEEEECCCCEE-EEE
T ss_conf             708998589937999986987467762368728998----245206999628991999994799399997477426-678


Q ss_pred             EECC------CCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEE--CC--------------CCEEEECCCCE
Q ss_conf             8148------99858999916999099998179929999899990669996--24--------------71246307999
Q 004603          636 FTGH------STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--VC--------------NLMPIILKGCF  693 (743)
Q Consensus       636 ~~gh------~~~V~sl~fsp~g~~lL~Sgs~Dg~IriWDl~s~~~v~~l~--~~--------------~~i~~s~~g~~  693 (743)
                      ...+      ......+.+.+++  .++..+.++.+++|+...........  ..              ..+.+++++..
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  280 (373)
T d2madh_         203 LVGAMLTAAQNLLTQPAQANKSG--RIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDG  280 (373)
T ss_pred             EEEECCCCCCCCEEEEEEECCCC--EEEEECCCCEEEEEECCCCEEEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCE
T ss_conf             86300366753043458878994--2999258965999976899078977630564757866413674133577149975


Q ss_pred             EE----------EEECCCEEEEEECCCC-----------EEEEEECCCCC--EEEEEECCCEEEEECCC
Q ss_conf             99----------9965985999956311-----------38987318999--89999699909996799
Q 004603          694 IL----------NSIFNCYLLLHRIFLN-----------LLSVSEWCNPD--EISTSSWKDSCCSHREL  739 (743)
Q Consensus       694 l~----------sgs~Dg~i~i~~~~v~-----------~l~v~~~~~~~--~i~Sgs~DG~V~iWd~~  739 (743)
                      ++          ....++.+.+|+....           ...+.+..++.  ++++++.|++|++||..
T Consensus       281 ~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~  349 (373)
T d2madh_         281 IYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAG  349 (373)
T ss_pred             EEEECCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCEEEEEECCCCCEEEEEEECCCCEEEEEECC
T ss_conf             999548882478625898699998999969898668998258999989998999996799929999999

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.44  E-value=9.3e-11  Score=79.64  Aligned_cols=112  Identities=12%  Similarity=0.029  Sum_probs=50.3

Q ss_pred             EEEEEECCCCCEEEEEE--CCCCEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEE
Q ss_conf             68999928999999995--8992999977998188997046977799999699998999959990999988899824899
Q 004603          558 VESCHFSPDGKLLATGG--HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT  635 (743)
Q Consensus       558 V~si~fspdg~~Lasgs--~Dg~V~IWDl~s~~~~~~l~~H~~~V~~vafsp~~~~LvSgs~Dg~IriWDl~~~~~~i~~  635 (743)
                      ...+.|+++++.++.+.  .+..+.+|+..+++.+..+..+.... .  +.......+..+.|+...++....... +..
T Consensus       108 ~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~dg~~~~v~~~~~~~-~~~  183 (355)
T d2bbkh_         108 PWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYH-I--FPTAPDTFFMHCRDGSLAKVAFGTEGT-PEI  183 (355)
T ss_dssp             GGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEE-E--EEEETTEEEEEETTSCEEEEECCSSSC-CEE
T ss_pred             CCEEEEECCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCCE-E--EECCCCCEEEECCCCCEEEEEECCCCE-EEE
T ss_conf             734999338871577327988204543057883766770587404-7--306996369993899989998347873-799


Q ss_pred             E------ECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCE
Q ss_conf             8------14899858999916999099998179929999899990
Q 004603          636 F------TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS  674 (743)
Q Consensus       636 ~------~gh~~~V~sl~fsp~g~~lL~Sgs~Dg~IriWDl~s~~  674 (743)
                      .      ..+...+....+.+.+. .++.++.++.+++|++..+.
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~  227 (355)
T d2bbkh_         184 THTEVFHPEDEFLINHPAYSQKAG-RLVWPTYTGKIHQIDLSSGD  227 (355)
T ss_dssp             EECCCCSCTTSCBCSCCEEETTTT-EEEEEBTTSEEEEEECTTSS
T ss_pred             EECCCCCCEECCEEEECCCCCCCC-EEEEECCCCEEEEEECCCCC
T ss_conf             962433300011061021538997-38874699829999658990

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.35  E-value=2.4e-10  Score=77.14  Aligned_cols=111  Identities=12%  Similarity=0.105  Sum_probs=52.6

Q ss_pred             EEEEEECCCCCEEEEEECCCEEEEEECCCCCEEE-EEEECCC----------CCEEEEEEECCCCCEEEEEECC------
Q ss_conf             7999996999989999599909999888998248-9981489----------9858999916999099998179------
Q 004603          600 ITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL-RTFTGHS----------TTVMSLDFHPSKEDLLCSCDNN------  662 (743)
Q Consensus       600 V~~vafsp~~~~LvSgs~Dg~IriWDl~~~~~~i-~~~~gh~----------~~V~sl~fsp~g~~lL~Sgs~D------  662 (743)
                      +.+..+.+++..++.++.++.+++|++..+...+ .....+.          .....+.+++++..+++.....      
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~  276 (355)
T d2bbkh_         197 INHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHK  276 (355)
T ss_dssp             CSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTT
T ss_pred             EEECCCCCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCCCCEEEEEEECCCEEEEEEECCCCEEEEEECCCCCEEEC
T ss_conf             61021538997388746998299996589907998445784412685433035108999807997678874068712651


Q ss_pred             ---CCEEEEECCCCEEEEEEECC---CCEEEECCCC--EEEEEECCCEEEEEECCC
Q ss_conf             ---92999989999066999624---7124630799--999996598599995631
Q 004603          663 ---SEIRYWSINNGSCAGVFKVC---NLMPIILKGC--FILNSIFNCYLLLHRIFL  710 (743)
Q Consensus       663 ---g~IriWDl~s~~~v~~l~~~---~~i~~s~~g~--~l~sgs~Dg~i~i~~~~v  710 (743)
                         ..|++||..+++.+..+...   ..+.++++|+  +++++..|+.|.+|+...
T Consensus       277 ~~~~~v~v~d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~t  332 (355)
T d2bbkh_         277 TASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAES  332 (355)
T ss_dssp             SCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTEEEEEETTT
T ss_pred             CCCCEEEEEECCCCCEEEEECCCCCEEEEEECCCCCEEEEEEECCCCEEEEEECCC
T ss_conf             79975999867888498996689987799992899969999978999899999999

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.26  E-value=1e-09  Score=73.24  Aligned_cols=110  Identities=8%  Similarity=-0.087  Sum_probs=60.9

Q ss_pred             EEEEEECCCCCEEEEEE-CCCCEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEE-
Q ss_conf             68999928999999995-8992999977998188997046977799999699998999959990999988899824899-
Q 004603          558 VESCHFSPDGKLLATGG-HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT-  635 (743)
Q Consensus       558 V~si~fspdg~~Lasgs-~Dg~V~IWDl~s~~~~~~l~~H~~~V~~vafsp~~~~LvSgs~Dg~IriWDl~~~~~~i~~-  635 (743)
                      ...++|+|||++++++. .++.+.+||+.+.+....+..+......   ......++..+.|+.+.+|++......... 
T Consensus       126 p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~  202 (368)
T d1mdah_         126 VHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIH---PGAAATHYLGSCPASLAASDLAAAPAAAGIV  202 (368)
T ss_dssp             TTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCE---EEETTEEECCCCTTSCEEEECCSSCCCCEEC
T ss_pred             CCCEEECCCCCEEEEEECCCCEEEEEECCCCCEEEEEECCCCCEEC---CCCCCEEEEECCCCCEEEEEECCCCEEEEEE
T ss_conf             6405887899899999689985999989989386786046752374---6998239999489988999826896266653


Q ss_pred             ----EECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCC
Q ss_conf             ----81489985899991699909999817992999989999
Q 004603          636 ----FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG  673 (743)
Q Consensus       636 ----~~gh~~~V~sl~fsp~g~~lL~Sgs~Dg~IriWDl~s~  673 (743)
                          +..+...+..+.+.+++. ++.+  .++.+++++...+
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~g~-~~~~--~~~~v~~~~~~~~  241 (368)
T d1mdah_         203 GAQCTGAQNCSSQAAQANYPGM-LVWA--VASSILQGDIPAA  241 (368)
T ss_dssp             CCCSCTTSCBCSCCEEETTTTE-EEEC--BSSCCEEEECCSS
T ss_pred             ECCCCCCCCCCEEECCCCCCCE-EEEE--CCCCEEEEEECCC
T ss_conf             0311135666466010155868-9993--4897799960699

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.24  E-value=3.7e-09  Score=69.71  Aligned_cols=128  Identities=12%  Similarity=0.054  Sum_probs=80.5

Q ss_pred             CCCEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEE-EEECCCEEEEEECCCCC----------EEEEEEECCCCCEE
Q ss_conf             99299997799818899704697779999969999899-99599909999888998----------24899814899858
Q 004603          576 DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADRTVRVWDTENPD----------YSLRTFTGHSTTVM  644 (743)
Q Consensus       576 Dg~V~IWDl~s~~~~~~l~~H~~~V~~vafsp~~~~Lv-Sgs~Dg~IriWDl~~~~----------~~i~~~~gh~~~V~  644 (743)
                      ++.+.+++....+.+..+..... ...+.++|++.+++ ++..+++|.+||+++..          .++.......-...
T Consensus       237 ~~v~vvd~~~~~~v~~~IPvgks-PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgpl  315 (441)
T d1qnia2         237 SKVPVVDGRGESEFTRYIPVPKN-PHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPL  315 (441)
T ss_dssp             CCCCEEECSSSCSSEEEECCBSS-CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEE
T ss_pred             CCCEEEECCCCCCEEEEEECCCC-CCCCEECCCCCEEEEECCCCCCEEEEEEEHHHHHHHCCCCCCEEEEEECCCCCCCC
T ss_conf             98289980368706899717988-66726899987899907759938999832244575256884247996014554766


Q ss_pred             EEEEECCCCCEEEEEECCCCEEEEECCC----------CEEEEEE-----ECCC----CEEEECCCCEEEEE---ECCCE
Q ss_conf             9999169990999981799299998999----------9066999-----6247----12463079999999---65985
Q 004603          645 SLDFHPSKEDLLCSCDNNSEIRYWSINN----------GSCAGVF-----KVCN----LMPIILKGCFILNS---IFNCY  702 (743)
Q Consensus       645 sl~fsp~g~~lL~Sgs~Dg~IriWDl~s----------~~~v~~l-----~~~~----~i~~s~~g~~l~sg---s~Dg~  702 (743)
                      ...|.++| +.+.+...|..|..|++..          ...+..+     .+|.    ..+++|+|+||+++   +.|+.
T Consensus       316 h~~fd~~g-~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~k~s~dr~  394 (441)
T d1qnia2         316 HTTFDGRG-NAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLSKFSKDRF  394 (441)
T ss_dssp             EEEECSSS-EEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEESCCGGGS
T ss_pred             CCEECCCC-EEEECCCCCCEEEEECCCHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCC
T ss_conf             52265785-59985244316897235422133226777656864532668987752454223898848996574442557


Q ss_pred             EEE
Q ss_conf             999
Q 004603          703 LLL  705 (743)
Q Consensus       703 i~i  705 (743)
                      +.+
T Consensus       395 ~~~  397 (441)
T d1qnia2         395 LPV  397 (441)
T ss_dssp             CCC
T ss_pred             CCC
T ss_conf             678

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.19  E-value=2.4e-10  Score=77.04  Aligned_cols=42  Identities=14%  Similarity=0.129  Sum_probs=17.4

Q ss_pred             CCCCEEEEEEECCCCCEEEEEECCC--CEEEEECCCCEEEEEEE
Q ss_conf             8998589999169990999981799--29999899990669996
Q 004603          639 HSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFK  680 (743)
Q Consensus       639 h~~~V~sl~fsp~g~~lL~Sgs~Dg--~IriWDl~s~~~v~~l~  680 (743)
                      |...+.++.|+|+|++++.+++...  .+++|+..+++++..+.
T Consensus       414 ~~~~~~s~~fSpdgky~~~~~s~~~~P~~~l~~~~~g~~v~~le  457 (470)
T d2bgra1         414 ERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVLE  457 (470)
T ss_dssp             TTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTTEEEEEEE
T ss_pred             CCCCEEEEEECCCCCEEEEEECCCCCCEEEEEECCCCCEEEEEE
T ss_conf             88987999999899999998328999819999989998999980

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.11  E-value=7.8e-10  Score=73.92  Aligned_cols=142  Identities=6%  Similarity=-0.028  Sum_probs=64.5

Q ss_pred             CCEEEEEECCCCCEEEEEE-CCC---CEEEE--ECCCCEEEEEEC------CCCCCE-----EEEEECCC--CCEEEEEE
Q ss_conf             9968999928999999995-899---29999--779981889970------469777-----99999699--99899995
Q 004603          556 SKVESCHFSPDGKLLATGG-HDK---KAVLW--CTESFTVKSTLE------EHTQWI-----TDVRFSPS--LSRLATSS  616 (743)
Q Consensus       556 ~~V~si~fspdg~~Lasgs-~Dg---~V~IW--Dl~s~~~~~~l~------~H~~~V-----~~vafsp~--~~~LvSgs  616 (743)
                      ..+..+.|.+++.+++... ...   .+.++  |..++.......      .....+     ....|.++  +..++.+.
T Consensus       260 ~~~~~~~w~~~~~~~~~~~~r~~~~~~~~~~~~d~~tg~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~  339 (470)
T d2bgra1         260 HYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISN  339 (470)
T ss_dssp             EEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEEC
T ss_pred             CEEEEEEECCCCCEEEEEEECCCCCEEEEEEEECCCCCCEEEEEEEEEEEEECCCEEECCCCCCCEEEECCCCCEEEEEC
T ss_conf             66778887687833478730468815999999618889478999875146621433531357772454237884798743


Q ss_pred             CCCEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCCCEEEEEECCC----C--EEEEECCCCEEEEEEEC----C----
Q ss_conf             99909999888998248998148998589999169990999981799----2--99998999906699962----4----
Q 004603          617 ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS----E--IRYWSINNGSCAGVFKV----C----  682 (743)
Q Consensus       617 ~Dg~IriWDl~~~~~~i~~~~gh~~~V~sl~fsp~g~~lL~Sgs~Dg----~--IriWDl~s~~~v~~l~~----~----  682 (743)
                      .|+..++|.+.........+..+...|..+ +.+++..+++++..++    .  |...++..+.....+..    +    
T Consensus       340 ~dg~~~ly~~~~~g~~~~~lt~g~~~v~~~-~~~d~~~iyf~a~~~~~~p~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~  418 (470)
T d2bgra1         340 EEGYRHICYFQIDKKDCTFITKGTWEVIGI-EALTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVTCLSCELNPERCQY  418 (470)
T ss_dssp             TTSCEEEEEEETTCSCCEESCCSSSCEEEE-EEECSSEEEEEESCGGGCTTCBEEEEEETTCTTCEEESSTTTSTTTBCB
T ss_pred             CCCCCEEEEEECCCCCEEEECCCCEEEEEE-EEECCCEEEEEEECCCCCCCEEEEEEEECCCCCCEEEECCCCCCCCCCE
T ss_conf             675764599952687304511698048787-8977999999995689983517999998889986057035435888987


Q ss_pred             CCEEEECCCCEEEEEE
Q ss_conf             7124630799999996
Q 004603          683 NLMPIILKGCFILNSI  698 (743)
Q Consensus       683 ~~i~~s~~g~~l~sgs  698 (743)
                      ..+.|+|+|+|++...
T Consensus       419 ~s~~fSpdgky~~~~~  434 (470)
T d2bgra1         419 YSVSFSKEAKYYQLRC  434 (470)
T ss_dssp             EEEEECTTSSEEEEEE
T ss_pred             EEEEECCCCCEEEEEE
T ss_conf             9999998999999983

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.07  E-value=7.1e-09  Score=67.97  Aligned_cols=119  Identities=8%  Similarity=-0.052  Sum_probs=71.5

Q ss_pred             EEEEEEECCCCCEEEEEECCCCCEEEEEE----------CCCCEEEEECCCCEEEEEECCCCC-------CEEEEEECCC
Q ss_conf             25798407999968999928999999995----------899299997799818899704697-------7799999699
Q 004603          546 TEFQLIPASTSKVESCHFSPDGKLLATGG----------HDKKAVLWCTESFTVKSTLEEHTQ-------WITDVRFSPS  608 (743)
Q Consensus       546 ~~~~~l~~H~~~V~si~fspdg~~Lasgs----------~Dg~V~IWDl~s~~~~~~l~~H~~-------~V~~vafsp~  608 (743)
                      +.+..+..+...  .++|+||++.|++++          .|+.|.+||..+++.+..+..+..       ....++|+|+
T Consensus        57 ~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpD  134 (368)
T d1mdah_          57 VTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCAS  134 (368)
T ss_dssp             EEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTT
T ss_pred             CEEEEEECCCCC--CCEECCCCCEEEEECCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCEECCCCCCCCEEECCC
T ss_conf             377888578777--513989998899975567640103567869999899993830643785421024688640588789


Q ss_pred             CCEEEEEE-CCCEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECC
Q ss_conf             99899995-9990999988899824899814899858999916999099998179929999899
Q 004603          609 LSRLATSS-ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN  671 (743)
Q Consensus       609 ~~~LvSgs-~Dg~IriWDl~~~~~~i~~~~gh~~~V~sl~fsp~g~~lL~Sgs~Dg~IriWDl~  671 (743)
                      +++++++. .++.|.+||+.+.+. +..+..+....    +.+.+...++..+.|+.+.+|++.
T Consensus       135 Gk~l~va~~~~~~v~~~d~~~~~~-~~~~~~~~~~~----~~~~~~~~~v~~~~Dg~~~~~~~~  193 (368)
T d1mdah_         135 SACLLFFLFGSSAAAGLSVPGASD-DQLTKSASCFH----IHPGAAATHYLGSCPASLAASDLA  193 (368)
T ss_dssp             SSCEEEEECSSSCEEEEEETTTEE-EEEEECSSCCC----CEEEETTEEECCCCTTSCEEEECC
T ss_pred             CCEEEEEECCCCEEEEEECCCCCE-EEEEECCCCCE----ECCCCCCEEEEECCCCCEEEEEEC
T ss_conf             989999968998599998998938-67860467523----746998239999489988999826

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.90  E-value=6.5e-08  Score=61.99  Aligned_cols=75  Identities=8%  Similarity=-0.005  Sum_probs=40.5

Q ss_pred             EEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCEE--------EEEEECC-------CCEEEECCCCEEEEE
Q ss_conf             8998148998589999169990999981799299998999906--------6999624-------712463079999999
Q 004603          633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC--------AGVFKVC-------NLMPIILKGCFILNS  697 (743)
Q Consensus       633 i~~~~gh~~~V~sl~fsp~g~~lL~Sgs~Dg~IriWDl~s~~~--------v~~l~~~-------~~i~~s~~g~~l~sg  697 (743)
                      +..+... .....+.++|+|+++++++..+++|.|||+.+...        ..++.+.       -...|.++|+...+.
T Consensus       251 ~~~IPvg-ksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~  329 (441)
T d1qnia2         251 TRYIPVP-KNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTL  329 (441)
T ss_dssp             EEEECCB-SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEEE
T ss_pred             EEEEECC-CCCCCCEECCCCCEEEEECCCCCCEEEEEEEHHHHHHHCCCCCCEEEEEECCCCCCCCCCEECCCCEEEECC
T ss_conf             8997179-886672689998789990775993899983224457525688424799601455476652265785599852


Q ss_pred             ECCCEEEEEEC
Q ss_conf             65985999956
Q 004603          698 IFNCYLLLHRI  708 (743)
Q Consensus       698 s~Dg~i~i~~~  708 (743)
                      +.|..|..|+.
T Consensus       330 ~~ds~v~kw~~  340 (441)
T d1qnia2         330 FIDSQVCKWNI  340 (441)
T ss_dssp             TTTTEEEEEEH
T ss_pred             CCCCEEEEECC
T ss_conf             44316897235

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.75  E-value=4.3e-06  Score=50.74  Aligned_cols=182  Identities=13%  Similarity=0.067  Sum_probs=117.8

Q ss_pred             CEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCC
Q ss_conf             78998227994899826999998774343222377840125798407999968999928999999995899299997799
Q 004603          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES  586 (743)
Q Consensus       507 ~~l~sGs~D~~V~iw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~si~fspdg~~Lasgs~Dg~V~IWDl~s  586 (743)
                      +++++...++.|..|+..                 +.    ...+......+.+++|+++++++++...++.+.+|+...
T Consensus        40 ~l~vt~~~~~~I~~i~p~-----------------g~----~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~   98 (302)
T d2p4oa1          40 TIFVTNHEVGEIVSITPD-----------------GN----QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVK   98 (302)
T ss_dssp             CEEEEETTTTEEEEECTT-----------------CC----EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEEC
T ss_pred             CEEEEECCCCEEEEEECC-----------------CC----EEEEECCCCCCCEEEECCCCCEEEEECCCCEEEEEEECC
T ss_conf             899996889989999089-----------------98----899971799853689867788699832895378887101


Q ss_pred             C--EEEEEE-CCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEEC---------CCCCEEEEEEECCCCC
Q ss_conf             8--188997-046977799999699998999959990999988899824899814---------8998589999169990
Q 004603          587 F--TVKSTL-EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG---------HSTTVMSLDFHPSKED  654 (743)
Q Consensus       587 ~--~~~~~l-~~H~~~V~~vafsp~~~~LvSgs~Dg~IriWDl~~~~~~i~~~~g---------h~~~V~sl~fsp~g~~  654 (743)
                      .  ...... ......+..+++.+++.++++.+.++.|..++.......+.....         ....+..+.+.  +..
T Consensus        99 ~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~--~~~  176 (302)
T d2p4oa1          99 SDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRF--GNF  176 (302)
T ss_dssp             TTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEE--TTE
T ss_pred             CCCCEEECCCCCCCCCCCEEEECCCCCEEEECCCCCCCEEEECCCCCCEEEECCCCCCEEECCCCCCCCCCCCCC--CCC
T ss_conf             111012102357863221667715797875035655410242168730367518864014315763224320116--983


Q ss_pred             EEEEEECCCCEEEEECCCCEEE---EEE---ECCCCEEEECCCCEEEEEECCCEEEEEECCCC
Q ss_conf             9999817992999989999066---999---62471246307999999965985999956311
Q 004603          655 LLCSCDNNSEIRYWSINNGSCA---GVF---KVCNLMPIILKGCFILNSIFNCYLLLHRIFLN  711 (743)
Q Consensus       655 lL~Sgs~Dg~IriWDl~s~~~v---~~l---~~~~~i~~s~~g~~l~sgs~Dg~i~i~~~~v~  711 (743)
                      ++++.+..+.|+.+++......   ..+   .....+++.++|++.++...++.|...+....
T Consensus       177 l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~  239 (302)
T d2p4oa1         177 LYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRS  239 (302)
T ss_dssp             EEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCC
T ss_pred             EEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEEECCCCCEEEECCCCC
T ss_conf             044037887698634433332345310158998752378799999999748991899878997

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.66  E-value=8.2e-06  Score=48.97  Aligned_cols=159  Identities=12%  Similarity=0.037  Sum_probs=99.7

Q ss_pred             CCCEEEEEECCCCCEEEEEEC-CCCEEEEECCCC-EEE--EEE--CCCCCCEEEEEECCCCCEEEEEE-CCCEEEEEECC
Q ss_conf             999689999289999999958-992999977998-188--997--04697779999969999899995-99909999888
Q 004603          555 TSKVESCHFSPDGKLLATGGH-DKKAVLWCTESF-TVK--STL--EEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTE  627 (743)
Q Consensus       555 ~~~V~si~fspdg~~Lasgs~-Dg~V~IWDl~s~-~~~--~~l--~~H~~~V~~vafsp~~~~LvSgs-~Dg~IriWDl~  627 (743)
                      ...+.++.|+|++++++++.. ...|.+|+.... ...  ..+  .........++|+|+++++++.. .+++|.+|++.
T Consensus       144 ~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~  223 (365)
T d1jofa_         144 NTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVID  223 (365)
T ss_dssp             TCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             CCCCEEEEECCCCCEEEEEECCCCEEEEEECCCCCCEEECCCEEECCCCCCEEEEEECCCCCEEEEECCCCCEEEEEEEC
T ss_conf             98115978889999899820799879999706887166525111127887408999889986699951589989999955


Q ss_pred             CCCEE-EEE---EE--------------CCCCCEEEEEEECCCCCEEEEEECCCC-----EEEEECCCCEEEEEEE----
Q ss_conf             99824-899---81--------------489985899991699909999817992-----9999899990669996----
Q 004603          628 NPDYS-LRT---FT--------------GHSTTVMSLDFHPSKEDLLCSCDNNSE-----IRYWSINNGSCAGVFK----  680 (743)
Q Consensus       628 ~~~~~-i~~---~~--------------gh~~~V~sl~fsp~g~~lL~Sgs~Dg~-----IriWDl~s~~~v~~l~----  680 (743)
                      ..... +..   ..              .+......+.++|+|+.++++...+..     |..|++.....+....    
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~  303 (365)
T d1jofa_         224 PATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSP  303 (365)
T ss_dssp             TTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEE
T ss_pred             CCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEEECCCCCCCCCEEEEEEEECCCCCEEEEEEEEE
T ss_conf             98753778731240245565566654444357763169989999789971357875422799998568871446767667


Q ss_pred             ------CCCCEEEEC-CCCEEEEE-ECCCEEEEEECCCCEE
Q ss_conf             ------247124630-79999999-6598599995631138
Q 004603          681 ------VCNLMPIIL-KGCFILNS-IFNCYLLLHRIFLNLL  713 (743)
Q Consensus       681 ------~~~~i~~s~-~g~~l~sg-s~Dg~i~i~~~~v~~l  713 (743)
                            ....+.+++ +|++|+++ ..++.|.+|+.....+
T Consensus       304 ~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~l  344 (365)
T d1jofa_         304 TPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEFL  344 (365)
T ss_dssp             CSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTEE
T ss_pred             EECCCCCCCEEEECCCCCCEEEEEECCCCEEEEEEEECCCC
T ss_conf             77679986478964899999999967999499999828867

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.58  E-value=1.3e-05  Score=47.68  Aligned_cols=112  Identities=11%  Similarity=0.017  Sum_probs=47.6

Q ss_pred             EEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEE
Q ss_conf             68999928999999995899299997799818899704697779999969999899995999099998889982489981
Q 004603          558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT  637 (743)
Q Consensus       558 V~si~fspdg~~Lasgs~Dg~V~IWDl~s~~~~~~l~~H~~~V~~vafsp~~~~LvSgs~Dg~IriWDl~~~~~~i~~~~  637 (743)
                      ..++++.++++++++-.....+.+++...................+++++++..+++...++.|..++...... .....
T Consensus       100 p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~-~~~~~  178 (260)
T d1rwia_         100 PEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQ-VVLPF  178 (260)
T ss_dssp             EEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCE-EECCC
T ss_pred             CCCCCCCCCCEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCEEEECCCCCEEEECCCCCCCCCCCCCCCEE-EEEEC
T ss_conf             00002455320575033555321123222201223203667752054548998864102564332223431001-22210


Q ss_pred             CCCCCEEEEEEECCCCCEEEEEECCCCEEEEECC
Q ss_conf             4899858999916999099998179929999899
Q 004603          638 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN  671 (743)
Q Consensus       638 gh~~~V~sl~fsp~g~~lL~Sgs~Dg~IriWDl~  671 (743)
                      ........+++.+++. ++++....+.|..++..
T Consensus       179 ~~~~~p~gi~~d~~g~-l~vsd~~~~~i~~~~~~  211 (260)
T d1rwia_         179 TDITAPWGIAVDEAGT-VYVTEHNTNQVVKLLAG  211 (260)
T ss_dssp             SSCCSEEEEEECTTCC-EEEEETTTTEEEEECTT
T ss_pred             CCCCCCCCCEEEEEEE-EEEEECCCCEEEEEECC
T ss_conf             1147876312310001-34321489989999699

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.50  E-value=2.2e-05  Score=46.38  Aligned_cols=143  Identities=8%  Similarity=-0.054  Sum_probs=81.6

Q ss_pred             CCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEECC----------CCCCEEEEEECCCCCEEEEEECCCEEEE
Q ss_conf             999968999928999999995899299997799818899704----------6977799999699998999959990999
Q 004603          554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE----------HTQWITDVRFSPSLSRLATSSADRTVRV  623 (743)
Q Consensus       554 H~~~V~si~fspdg~~Lasgs~Dg~V~IWDl~s~~~~~~l~~----------H~~~V~~vafsp~~~~LvSgs~Dg~Iri  623 (743)
                      ....+..+.+.++++++++.+.++.+..++............          ....+..+.+.. ..++++....+.|+.
T Consensus       111 ~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~-~~l~~~~~~~~~i~~  189 (302)
T d2p4oa1         111 DAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG-NFLYVSNTEKMLLLR  189 (302)
T ss_dssp             TCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET-TEEEEEETTTTEEEE
T ss_pred             CCCCCCEEEECCCCCEEEECCCCCCCEEEECCCCCCEEEECCCCCCEEECCCCCCCCCCCCCCC-CCEEEECCCCCEEEE
T ss_conf             8632216677157978750356554102421687303675188640143157632243201169-830440378876986


Q ss_pred             EECCCCCEE--EEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEEC------CCCEEE---ECCCC
Q ss_conf             988899824--8998148998589999169990999981799299998999906699962------471246---30799
Q 004603          624 WDTENPDYS--LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKV------CNLMPI---ILKGC  692 (743)
Q Consensus       624 WDl~~~~~~--i~~~~gh~~~V~sl~fsp~g~~lL~Sgs~Dg~IriWDl~s~~~v~~l~~------~~~i~~---s~~g~  692 (743)
                      +++......  ...+. ....+..++|.++|. ++++...++.|..++.. ++.......      .+.++|   .++++
T Consensus       190 ~~~~~~~~~~~~~~~~-~~~~pdgia~d~dG~-l~va~~~~~~V~~i~p~-G~~~~~~~~~~~~~~pt~vafg~~~~D~~  266 (302)
T d2p4oa1         190 IPVDSTDKPGEPEIFV-EQTNIDDFAFDVEGN-LYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCT  266 (302)
T ss_dssp             EEBCTTSCBCCCEEEE-ESCCCSSEEEBTTCC-EEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTT
T ss_pred             CCCCCCCCCCCCCCCC-CCCCCCCEEECCCCC-EEEEECCCCCEEEECCC-CCEEEEEECCCCCCCCEEEEECCCCCCCC
T ss_conf             3443333234531015-899875237879999-99997489918998789-97899996378988824899708788789


Q ss_pred             EEEEEECC
Q ss_conf             99999659
Q 004603          693 FILNSIFN  700 (743)
Q Consensus       693 ~l~sgs~D  700 (743)
                      .|+..+..
T Consensus       267 ~Lyvtt~~  274 (302)
T d2p4oa1         267 AIYVVTNG  274 (302)
T ss_dssp             EEEEEECT
T ss_pred             EEEEECCC
T ss_conf             89999889

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.49  E-value=2.3e-05  Score=46.19  Aligned_cols=123  Identities=13%  Similarity=0.269  Sum_probs=80.5

Q ss_pred             CCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEE--CCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCE
Q ss_conf             9999689999289999999958992999977998188997--04697779999969999899995999099998889982
Q 004603          554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL--EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY  631 (743)
Q Consensus       554 H~~~V~si~fspdg~~Lasgs~Dg~V~IWDl~s~~~~~~l--~~H~~~V~~vafsp~~~~LvSgs~Dg~IriWDl~~~~~  631 (743)
                      ......++++.+++.++++....+.+.+++.. ++.+..+  ..+......+++.+++..+++....+.|++||... ..
T Consensus       112 ~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~G-~~  189 (279)
T d1q7fa_         112 ILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEG-QY  189 (279)
T ss_dssp             TCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTC-CE
T ss_pred             CCCCCCEECCCCCCCEEEEEECCCEEEEECCC-CCEEECCCCCCCCCCCCEEEECCCEEEEEEECCCCCEEEEECCC-CE
T ss_conf             64254200001478479996326325676268-75010022001025662432012001786201355100230479-44


Q ss_pred             EEEEEE--CCCCCEEEEEEECCCCCEEEEEE-CCCCEEEEECCCCEEEEEEEC
Q ss_conf             489981--48998589999169990999981-799299998999906699962
Q 004603          632 SLRTFT--GHSTTVMSLDFHPSKEDLLCSCD-NNSEIRYWSINNGSCAGVFKV  681 (743)
Q Consensus       632 ~i~~~~--gh~~~V~sl~fsp~g~~lL~Sgs-~Dg~IriWDl~s~~~v~~l~~  681 (743)
                       +..+.  +.......+++.++|. ++++-. .+..|.+|+. .++.+.++..
T Consensus       190 -~~~~g~~g~~~~P~giavD~~G~-i~Vad~~~~~~v~~f~~-~G~~~~~~~~  239 (279)
T d1q7fa_         190 -LRQIGGEGITNYPIGVGINSNGE-ILIADNHNNFNLTIFTQ-DGQLISALES  239 (279)
T ss_dssp             -EEEESCTTTSCSEEEEEECTTCC-EEEEECSSSCEEEEECT-TSCEEEEEEE
T ss_pred             -EEEECCCCCCCCCCCCCCCCCCE-EEEEECCCCCEEEEECC-CCCEEEEEEC
T ss_conf             -45301132114876232314786-99997899808999999-9999999968

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.49  E-value=2.4e-05  Score=46.07  Aligned_cols=141  Identities=11%  Similarity=0.116  Sum_probs=86.4

Q ss_pred             CCCEEEEEECCCCCEEEEEEC-CCEEEEEECCCCCEEE--EEEE--CCCCCEEEEEEECCCCCEEEEEECCCCEEEEECC
Q ss_conf             977799999699998999959-9909999888998248--9981--4899858999916999099998179929999899
Q 004603          597 TQWITDVRFSPSLSRLATSSA-DRTVRVWDTENPDYSL--RTFT--GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN  671 (743)
Q Consensus       597 ~~~V~~vafsp~~~~LvSgs~-Dg~IriWDl~~~~~~i--~~~~--gh~~~V~sl~fsp~g~~lL~Sgs~Dg~IriWDl~  671 (743)
                      ...+.++.|+|+++++++++. ...|.+|+........  ....  ........+.|+|+++.+++++..+++|.+|++.
T Consensus       144 ~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~  223 (365)
T d1jofa_         144 NTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVID  223 (365)
T ss_dssp             TCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             CCCCEEEEECCCCCEEEEEECCCCEEEEEECCCCCCEEECCCEEECCCCCCEEEEEECCCCCEEEEECCCCCEEEEEEEC
T ss_conf             98115978889999899820799879999706887166525111127887408999889986699951589989999955


Q ss_pred             CCEEEEEEE--C---------------------CCCEEEECCCCEEEEEEC--C----CEEEEEECCC------------
Q ss_conf             990669996--2---------------------471246307999999965--9----8599995631------------
Q 004603          672 NGSCAGVFK--V---------------------CNLMPIILKGCFILNSIF--N----CYLLLHRIFL------------  710 (743)
Q Consensus       672 s~~~v~~l~--~---------------------~~~i~~s~~g~~l~sgs~--D----g~i~i~~~~v------------  710 (743)
                      .........  .                     ...+.++|+|+++++...  +    ..+..++...            
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~  303 (365)
T d1jofa_         224 PATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSP  303 (365)
T ss_dssp             TTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEE
T ss_pred             CCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEEECCCCCCCCCEEEEEEEECCCCCEEEEEEEEE
T ss_conf             98753778731240245565566654444357763169989999789971357875422799998568871446767667


Q ss_pred             ------CEEEEEECC-CCCEEEEE-ECCCEEEEEC
Q ss_conf             ------138987318-99989999-6999099967
Q 004603          711 ------NLLSVSEWC-NPDEISTS-SWKDSCCSHR  737 (743)
Q Consensus       711 ------~~l~v~~~~-~~~~i~Sg-s~DG~V~iWd  737 (743)
                            ....+.+.. ++.+++.+ ..++.|.+|+
T Consensus       304 ~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~  338 (365)
T d1jofa_         304 TPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYR  338 (365)
T ss_dssp             CSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEE
T ss_pred             EECCCCCCCEEEECCCCCCEEEEEECCCCEEEEEE
T ss_conf             77679986478964899999999967999499999

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.38  E-value=4.4e-05  Score=44.45  Aligned_cols=149  Identities=6%  Similarity=-0.006  Sum_probs=96.5

Q ss_pred             CEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEE
Q ss_conf             96899992899999999589929999779981889970469777999996999989999599909999888998248998
Q 004603          557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF  636 (743)
Q Consensus       557 ~V~si~fspdg~~Lasgs~Dg~V~IWDl~s~~~~~~l~~H~~~V~~vafsp~~~~LvSgs~Dg~IriWDl~~~~~~i~~~  636 (743)
                      ....++++++++++++....+.+++++..+...+.... ......++++.+++.++++-..+..+..++...........
T Consensus        58 ~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~~-~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~  136 (260)
T d1rwia_          58 QPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFD-GLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPF  136 (260)
T ss_dssp             SCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCCC-SCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCC
T ss_pred             CCEEEEECCCCCEEEEEEEECEEEEEEECCCEEEEEEE-EEEECCCCCCCCCCEEEEECCCCCCCCCCCCCCCEEEEEEE
T ss_conf             84089993899889863100003554211200000010-00000000245532057503355532112322220122320


Q ss_pred             ECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEE----ECCCCEEEECCCCEEEEEECCCEEEEEEC
Q ss_conf             1489985899991699909999817992999989999066999----62471246307999999965985999956
Q 004603          637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF----KVCNLMPIILKGCFILNSIFNCYLLLHRI  708 (743)
Q Consensus       637 ~gh~~~V~sl~fsp~g~~lL~Sgs~Dg~IriWDl~s~~~v~~l----~~~~~i~~s~~g~~l~sgs~Dg~i~i~~~  708 (743)
                      . ......++++.+++. ++++...++.|..++..........    .....+++.+++.+.++....+.+...+.
T Consensus       137 ~-~~~~p~~i~~~~~g~-~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~  210 (260)
T d1rwia_         137 T-GLNDPDGVAVDNSGN-VYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLA  210 (260)
T ss_dssp             C-SCCSCCEEEECTTCC-EEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECT
T ss_pred             C-CCCCCCEEEECCCCC-EEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCCCEEEEEEEEEEEECCCCEEEEEEC
T ss_conf             3-667752054548998-8641025643322234310012221011478763123100013432148998999969

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.28  E-value=7.7e-05  Score=42.95  Aligned_cols=147  Identities=14%  Similarity=0.121  Sum_probs=83.7

Q ss_pred             EEEECCCCCEEEEEECCCCCEEEEEECC-CC--EEEEECCCCEEEEEECCCCCCEEEEEECCCCCEE-EEEECCCE--EE
Q ss_conf             9840799996899992899999999589-92--9999779981889970469777999996999989-99959990--99
Q 004603          549 QLIPASTSKVESCHFSPDGKLLATGGHD-KK--AVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL-ATSSADRT--VR  622 (743)
Q Consensus       549 ~~l~~H~~~V~si~fspdg~~Lasgs~D-g~--V~IWDl~s~~~~~~l~~H~~~V~~vafsp~~~~L-vSgs~Dg~--Ir  622 (743)
                      ..+..+.+.+.+..|+|++..++..... +.  +..+........ .............+.+++..+ ++...++.  |.
T Consensus        76 ~~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~  154 (269)
T d2hqsa1          76 RQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR-QVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVY  154 (269)
T ss_dssp             EEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-ECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEE
T ss_pred             EEEEEEECCCCCCEECCCCCEEEEEEECCCCCCEEECCCCCCCCE-EEEECCCCCCCCCCCCCCCCCEECCCCCCCCEEE
T ss_conf             677642024543024488986467640278641000022212200-0010144211454345544330000126874386


Q ss_pred             EEECCCCCEEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEE--CCCCEEEEEEECC---CCEEEECCCCEEEEE
Q ss_conf             99888998248998148998589999169990999981799299998--9999066999624---712463079999999
Q 004603          623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS--INNGSCAGVFKVC---NLMPIILKGCFILNS  697 (743)
Q Consensus       623 iWDl~~~~~~i~~~~gh~~~V~sl~fsp~g~~lL~Sgs~Dg~IriWD--l~s~~~v~~l~~~---~~i~~s~~g~~l~sg  697 (743)
                      +.++....  ...............|+|++..+++.....+...+|.  ...+.. ..+...   ....|+|+|++|+..
T Consensus       155 ~~~~~~~~--~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~p~~SPDG~~i~f~  231 (269)
T d2hqsa1         155 KVNINGGA--PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLSSTFLDETPSLAPNGTMVIYS  231 (269)
T ss_dssp             EEETTSSC--CEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE-EECCCSSSCEEEEECTTSSEEEEE
T ss_pred             EEECCCCC--CEEEECCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCC-EEEECCCCCCCEEECCCCCEEEEE
T ss_conf             54213310--001000122223432234543057786058801256760356440-585068654455898999999999


Q ss_pred             EC
Q ss_conf             65
Q 004603          698 IF  699 (743)
Q Consensus       698 s~  699 (743)
                      +.
T Consensus       232 s~  233 (269)
T d2hqsa1         232 SS  233 (269)
T ss_dssp             EE
T ss_pred             EC
T ss_conf             81

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.26  E-value=8.5e-05  Score=42.69  Aligned_cols=157  Identities=9%  Similarity=0.011  Sum_probs=83.0

Q ss_pred             CCCCCEEEEEECCCCCEEEEEECC----CCEEEEECCCCEEEEEECC--CCCCEEEEEECCCCCEEEEEEC------CCE
Q ss_conf             799996899992899999999589----9299997799818899704--6977799999699998999959------990
Q 004603          553 ASTSKVESCHFSPDGKLLATGGHD----KKAVLWCTESFTVKSTLEE--HTQWITDVRFSPSLSRLATSSA------DRT  620 (743)
Q Consensus       553 ~H~~~V~si~fspdg~~Lasgs~D----g~V~IWDl~s~~~~~~l~~--H~~~V~~vafsp~~~~LvSgs~------Dg~  620 (743)
                      ........++++++|+++++...+    +.+...+............  -...+..+++.+++.+.++...      .+.
T Consensus        79 ~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~  158 (319)
T d2dg1a1          79 SHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGG  158 (319)
T ss_dssp             CSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEE
T ss_pred             CCCCCEEEEEECCCCCEEEEECCCCCCCEEEEEECCCCCEEEEECCCCCCCCCCCCEEEEECCCEEECCCCCCCCCCCCE
T ss_conf             89987038999999999999568973110499873899636444267775558752267730653200135400257421


Q ss_pred             EEEEECCCCCEEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCC-EEEEEEE-----------CCCCEEEE
Q ss_conf             99998889982489981489985899991699909999817992999989999-0669996-----------24712463
Q 004603          621 VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFK-----------VCNLMPII  688 (743)
Q Consensus       621 IriWDl~~~~~~i~~~~gh~~~V~sl~fsp~g~~lL~Sgs~Dg~IriWDl~s~-~~v~~l~-----------~~~~i~~s  688 (743)
                      +..++.....  +..+...-.....++|+|+++.++++-+..+.|+.|++... .......           ....+++.
T Consensus       159 v~~~~~dg~~--~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD  236 (319)
T d2dg1a1         159 VYYVSPDFRT--VTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCID  236 (319)
T ss_dssp             EEEECTTSCC--EEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEB
T ss_pred             EEEEECCCCE--EEEEEECCCEEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEECCCCCEEEECCCCCCCEEEEEEC
T ss_conf             5788416633--57886123301000101222127874046891479997699836202463333125776410364173


Q ss_pred             CCCCEEEEEECCCEEEEEECCCC
Q ss_conf             07999999965985999956311
Q 004603          689 LKGCFILNSIFNCYLLLHRIFLN  711 (743)
Q Consensus       689 ~~g~~l~sgs~Dg~i~i~~~~v~  711 (743)
                      .+|++.++....+.|.+.+....
T Consensus       237 ~~G~l~Va~~~~g~V~~~~p~G~  259 (319)
T d2dg1a1         237 SDDNLYVAMYGQGRVLVFNKRGY  259 (319)
T ss_dssp             TTCCEEEEEETTTEEEEECTTSC
T ss_pred             CCCCEEEEECCCCEEEEECCCCC
T ss_conf             89999999848998999979995

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.22  E-value=0.0001  Score=42.16  Aligned_cols=140  Identities=9%  Similarity=0.047  Sum_probs=87.2

Q ss_pred             CCEEEEEECCCCCEEEEEECC------CCEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEE-EEEECCCEEEEEECCC
Q ss_conf             996899992899999999589------929999779981889970469777999996999989-9995999099998889
Q 004603          556 SKVESCHFSPDGKLLATGGHD------KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL-ATSSADRTVRVWDTEN  628 (743)
Q Consensus       556 ~~V~si~fspdg~~Lasgs~D------g~V~IWDl~s~~~~~~l~~H~~~V~~vafsp~~~~L-vSgs~Dg~IriWDl~~  628 (743)
                      ..+..+++.++|++.++....      +.+..++.+.. .+..+...-.....++|+|+++.| ++-...+.|+.|++..
T Consensus       130 ~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~-~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~  208 (319)
T d2dg1a1         130 YCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFR-TVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALED  208 (319)
T ss_dssp             CCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSC-CEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             CCCCCEEEEECCCEEECCCCCCCCCCCCEEEEEECCCC-EEEEEEECCCEEEEEEECCCCCEEEEECCCCCCEEEEEECC
T ss_conf             58752267730653200135400257421578841663-35788612330100010122212787404689147999769


Q ss_pred             CCEEEEE-------EECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEECC----------CCEEEECCC
Q ss_conf             9824899-------81489985899991699909999817992999989999066999624----------712463079
Q 004603          629 PDYSLRT-------FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVC----------NLMPIILKG  691 (743)
Q Consensus       629 ~~~~i~~-------~~gh~~~V~sl~fsp~g~~lL~Sgs~Dg~IriWDl~s~~~v~~l~~~----------~~i~~s~~g  691 (743)
                      .......       ..........+++..+|. ++++....+.|.+||. .++.+..+...          +++++.+..
T Consensus       209 ~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~-l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~  286 (319)
T d2dg1a1         209 DGVTIQPFGATIPYYFTGHEGPDSCCIDSDDN-LYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGT  286 (319)
T ss_dssp             TSSSEEEEEEEEEEECCSSSEEEEEEEBTTCC-EEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTS
T ss_pred             CCCEECCCCCEEEECCCCCCCEEEEEECCCCC-EEEEECCCCEEEEECC-CCCEEEEEECCCCCCCCCCEEEEEEEECCC
T ss_conf             98362024633331257764103641738999-9999848998999979-995988996887577867504667780799


Q ss_pred             CEEEEEE
Q ss_conf             9999996
Q 004603          692 CFILNSI  698 (743)
Q Consensus       692 ~~l~sgs  698 (743)
                      ..+++..
T Consensus       287 ~~~~~t~  293 (319)
T d2dg1a1         287 NQLIICS  293 (319)
T ss_dssp             CEEEEEE
T ss_pred             CEEEEEC
T ss_conf             8899985

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.98  E-value=0.0003  Score=39.30  Aligned_cols=148  Identities=18%  Similarity=0.186  Sum_probs=74.8

Q ss_pred             CCCCCEEEEEECCCCCEEEEEECCC---CEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEEC-CCEEEEEECCC
Q ss_conf             7999968999928999999995899---2999977998188997046977799999699998999959-99099998889
Q 004603          553 ASTSKVESCHFSPDGKLLATGGHDK---KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTEN  628 (743)
Q Consensus       553 ~H~~~V~si~fspdg~~Lasgs~Dg---~V~IWDl~s~~~~~~l~~H~~~V~~vafsp~~~~LvSgs~-Dg~IriWDl~~  628 (743)
                      .+...+..-+|||||+.||-...+.   .+.+.+...... ..+..+...+....|+|++..++.... ++...++....
T Consensus        36 ~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~  114 (269)
T d2hqsa1          36 RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV-RQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDL  114 (269)
T ss_dssp             EESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEET
T ss_pred             CCCCCEEEEEECCCCCEEEEEEEECCCCCEEEEECCCCCE-EEEEEEECCCCCCEECCCCCEEEEEEECCCCCCEEECCC
T ss_conf             5898426038878999899998152675134431136750-677642024543024488986467640278641000022


Q ss_pred             CCEEEEEEECCCCCEEEEEEECCCCCEEEEEECCCC--EEEEECCCCEEEEEEECC---CCEEEECCCCEEEEEECCC
Q ss_conf             982489981489985899991699909999817992--999989999066999624---7124630799999996598
Q 004603          629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE--IRYWSINNGSCAGVFKVC---NLMPIILKGCFILNSIFNC  701 (743)
Q Consensus       629 ~~~~i~~~~gh~~~V~sl~fsp~g~~lL~Sgs~Dg~--IriWDl~s~~~v~~l~~~---~~i~~s~~g~~l~sgs~Dg  701 (743)
                      ...................+.+.+..++++...++.  |.+.++..+.........   ....+++++.+++..+.++
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~  192 (269)
T d2hqsa1         115 ASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNG  192 (269)
T ss_dssp             TTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECS
T ss_pred             CCCCCEEEEECCCCCCCCCCCCCCCCCEECCCCCCCCEEEEEECCCCCCEEEECCCCCCCCCCCCCCCCEEEEEEECC
T ss_conf             212200001014421145434554433000012687438654213310001000122223432234543057786058

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=97.79  E-value=0.00066  Score=37.19  Aligned_cols=146  Identities=10%  Similarity=0.057  Sum_probs=60.0

Q ss_pred             EEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEECCC-C----CCEEEEEECCCCCEEEEEEC---------------
Q ss_conf             689999289999999958992999977998188997046-9----77799999699998999959---------------
Q 004603          558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEH-T----QWITDVRFSPSLSRLATSSA---------------  617 (743)
Q Consensus       558 V~si~fspdg~~Lasgs~Dg~V~IWDl~s~~~~~~l~~H-~----~~V~~vafsp~~~~LvSgs~---------------  617 (743)
                      ...+.|.++++.++++.....|..++.+..... .+... .    .....+++.+++.+.++-..               
T Consensus        73 P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~-~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~  151 (314)
T d1pjxa_          73 PAGCQCDRDANQLFVADMRLGLLVVQTDGTFEE-IAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEK  151 (314)
T ss_dssp             EEEEEECSSSSEEEEEETTTEEEEEETTSCEEE-CCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSS
T ss_pred             CEEEEEECCCCEEEEEECCCEEEEEECCCCEEE-EEECCCCCCCCCCCCEEEECCCCCEEEECCCCCCCCCCCCCEECCC
T ss_conf             306999079998999977983999947774799-9733432454578727898889989991486675432011000268


Q ss_pred             CCEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCC----CEEEEEECCCCEEEEECCCCEEEE---EEE---C-----C
Q ss_conf             990999988899824899814899858999916999----099998179929999899990669---996---2-----4
Q 004603          618 DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE----DLLCSCDNNSEIRYWSINNGSCAG---VFK---V-----C  682 (743)
Q Consensus       618 Dg~IriWDl~~~~~~i~~~~gh~~~V~sl~fsp~g~----~lL~Sgs~Dg~IriWDl~s~~~v~---~l~---~-----~  682 (743)
                      ++.|..++..  .. ...+.........++|++++.    .++++-+..+.|+.||+.....+.   .+.   .     .
T Consensus       152 ~G~v~~~~~d--g~-~~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~p  228 (314)
T d1pjxa_         152 FGSIYCFTTD--GQ-MIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGA  228 (314)
T ss_dssp             CEEEEEECTT--SC-EEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEE
T ss_pred             CCEEEEEEEC--CC-EEEEECCCCEEEEEEECCCCCCCEEEEEEEEECCCCEEEEECCCCCCCCEEEEEEECCCCCCCCC
T ss_conf             8438999525--74-03750785322136997887763037999860243117761167654301568997133566641


Q ss_pred             CCEEEECCCCEEEEEECCCEEEEEE
Q ss_conf             7124630799999996598599995
Q 004603          683 NLMPIILKGCFILNSIFNCYLLLHR  707 (743)
Q Consensus       683 ~~i~~s~~g~~l~sgs~Dg~i~i~~  707 (743)
                      ..+++..+|+..++....+.|.+++
T Consensus       229 dGiavD~~GnlyVa~~~~g~I~~~d  253 (314)
T d1pjxa_         229 DGMDFDEDNNLLVANWGSSHIEVFG  253 (314)
T ss_dssp             EEEEEBTTCCEEEEEETTTEEEEEC
T ss_pred             EEEEEECCCCEEEEECCCCEEEEEE
T ss_conf             0257834785799982799999996

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=0.00017  Score=40.77  Aligned_cols=144  Identities=8%  Similarity=0.060  Sum_probs=74.8

Q ss_pred             CEEEEEECCCCCEEEEEEC-C---CCEEEEECCCCEEEEEECCCC-CCE----EEEEECCCCCEEE---EEECCC--EEE
Q ss_conf             9689999289999999958-9---929999779981889970469-777----9999969999899---995999--099
Q 004603          557 KVESCHFSPDGKLLATGGH-D---KKAVLWCTESFTVKSTLEEHT-QWI----TDVRFSPSLSRLA---TSSADR--TVR  622 (743)
Q Consensus       557 ~V~si~fspdg~~Lasgs~-D---g~V~IWDl~s~~~~~~l~~H~-~~V----~~vafsp~~~~Lv---Sgs~Dg--~Ir  622 (743)
                      .+..+.|++++++++.... +   ..|.++|..++++...+.+.. .+|    ....|.+++..++   ....+|  .++
T Consensus       256 y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly  335 (465)
T d1xfda1         256 YITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFY  335 (465)
T ss_dssp             EEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEE
T ss_pred             EEEEEEECCCCEEEEEEECCCCCCCEEEEECCCCCCEEEEEEECCCCEEECCCCCEEECCCCCEEEEEEEEEECCCCCEE
T ss_conf             04566875799389999741003013799707999278778972785173567860574689805777765431667168


Q ss_pred             EEECC-----CCCEEEEEEECCCCCEEEE-EEECCCCCEEEEEECCC--CEEEE--ECCCCEEEEEEE-------CCCCE
Q ss_conf             99888-----9982489981489985899-99169990999981799--29999--899990669996-------24712
Q 004603          623 VWDTE-----NPDYSLRTFTGHSTTVMSL-DFHPSKEDLLCSCDNNS--EIRYW--SINNGSCAGVFK-------VCNLM  685 (743)
Q Consensus       623 iWDl~-----~~~~~i~~~~gh~~~V~sl-~fsp~g~~lL~Sgs~Dg--~IriW--Dl~s~~~v~~l~-------~~~~i  685 (743)
                      ..++.     .....+..+....-.|..+ .|+.++..+++++..++  .-++|  ++.......++.       +...+
T Consensus       336 ~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~~lt~~~~~~~~~~~~  415 (465)
T d1xfda1         336 HITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSA  415 (465)
T ss_dssp             EEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEE
T ss_pred             EEEECCCCCCCCCCEEEEECCCCCEEEEEEEECCCCCEEEEEEECCCCCCEEEEEEECCCCCCCEEECCCCCCCCCEEEE
T ss_conf             99831566667886269822699219977898389999999996899982689999778998605531446788987999


Q ss_pred             EEECCCCEEEEEECC
Q ss_conf             463079999999659
Q 004603          686 PIILKGCFILNSIFN  700 (743)
Q Consensus       686 ~~s~~g~~l~sgs~D  700 (743)
                      .|++++.|++.....
T Consensus       416 ~~S~~~~y~v~~~s~  430 (465)
T d1xfda1         416 SFSHSMDFFLLKCEG  430 (465)
T ss_dssp             EECTTSSEEEEECCS
T ss_pred             EECCCCCEEEEEEEC
T ss_conf             999999999998006

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.70  E-value=0.0009  Score=36.33  Aligned_cols=178  Identities=11%  Similarity=0.056  Sum_probs=111.2

Q ss_pred             EEEEEECCC-CCEEEEE-ECCCCEEEEECCCCEEEEEEC-CCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEE
Q ss_conf             689999289-9999999-589929999779981889970-4697779999969999899995999099998889982489
Q 004603          558 VESCHFSPD-GKLLATG-GHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR  634 (743)
Q Consensus       558 V~si~fspd-g~~Lasg-s~Dg~V~IWDl~s~~~~~~l~-~H~~~V~~vafsp~~~~LvSgs~Dg~IriWDl~~~~~~i~  634 (743)
                      ...+++..+ +..+++. +.++.|.+++.. ++....+. ........+++.+++.++++....+.+.+++... .. +.
T Consensus        72 p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g-~~-~~  148 (279)
T d1q7fa_          72 PNRVAVVRNSGDIIVTERSPTHQIQIYNQY-GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG-NV-LH  148 (279)
T ss_dssp             EEEEEEETTTTEEEEEECGGGCEEEEECTT-SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS-CE-EE
T ss_pred             CCCCCCCCCCCCCCEECCCCCCCCCCCCCC-CCCEEECCCCCCCCCCEECCCCCCCEEEEEECCCEEEEECCCC-CE-EE
T ss_conf             630001234455200004775310000025-6302403888642542000014784799963263256762687-50-10


Q ss_pred             EE--ECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEEC------CCCEEEECCCCEEEEEEC-CCEEEE
Q ss_conf             98--148998589999169990999981799299998999906699962------471246307999999965-985999
Q 004603          635 TF--TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKV------CNLMPIILKGCFILNSIF-NCYLLL  705 (743)
Q Consensus       635 ~~--~gh~~~V~sl~fsp~g~~lL~Sgs~Dg~IriWDl~s~~~v~~l~~------~~~i~~s~~g~~l~sgs~-Dg~i~i  705 (743)
                      .+  ..+......+++.+++. ++++....+.|++||.. ++.+..+..      ...+++.++|..+++-.. +++|.+
T Consensus       149 ~~g~~~~~~~~~~i~~d~~g~-i~v~d~~~~~V~~~d~~-G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~  226 (279)
T d1q7fa_         149 KFGCSKHLEFPNGVVVNDKQE-IFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTI  226 (279)
T ss_dssp             EEECTTTCSSEEEEEECSSSE-EEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEE
T ss_pred             CCCCCCCCCCCCEEEECCCEE-EEEEECCCCCEEEEECC-CCEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEE
T ss_conf             022001025662432012001-78620135510023047-9444530113211487623231478699997899808999


Q ss_pred             EECCCC-------------EEEEEECCCCCEEEEEECCCEEEEECCCCC
Q ss_conf             956311-------------389873189998999969990999679953
Q 004603          706 HRIFLN-------------LLSVSEWCNPDEISTSSWKDSCCSHRELYL  741 (743)
Q Consensus       706 ~~~~v~-------------~l~v~~~~~~~~i~Sgs~DG~V~iWd~~~l  741 (743)
                      .+....             ...++... .+.++..+.+.+|++|+...+
T Consensus       227 f~~~G~~~~~~~~~~~~~~p~~vav~~-dG~l~V~~~n~~v~~fr~~~~  274 (279)
T d1q7fa_         227 FTQDGQLISALESKVKHAQCFDVALMD-DGSVVLASKDYRLYIYRYVQL  274 (279)
T ss_dssp             ECTTSCEEEEEEESSCCSCEEEEEEET-TTEEEEEETTTEEEEEECSCC
T ss_pred             ECCCCCEEEEEECCCCCCCEEEEEEEC-CCCEEEEECCCEEEEEEEEEE
T ss_conf             999999999996888889883799908-991999918996999872203

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=97.65  E-value=0.001  Score=35.92  Aligned_cols=145  Identities=14%  Similarity=0.152  Sum_probs=79.0

Q ss_pred             EEEEEECCCCCEEEEEEC---------------CCCEEEEECCCCEEEEEECCCCCCEEEEEECCCCC-----EEEEEEC
Q ss_conf             689999289999999958---------------99299997799818899704697779999969999-----8999959
Q 004603          558 VESCHFSPDGKLLATGGH---------------DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS-----RLATSSA  617 (743)
Q Consensus       558 V~si~fspdg~~Lasgs~---------------Dg~V~IWDl~s~~~~~~l~~H~~~V~~vafsp~~~-----~LvSgs~  617 (743)
                      .+.+++.++|++.++-..               ++.|..++.+ ++..... ..-.....++|+|+++     ++++-+.
T Consensus       119 pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d-g~~~~~~-~~~~~pNGi~~~~d~d~~~~~lyv~d~~  196 (314)
T d1pjxa_         119 CNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD-TAFQFPNGIAVRHMNDGRPYQLIVAETP  196 (314)
T ss_dssp             CCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE-EEESSEEEEEEEECTTSCEEEEEEEETT
T ss_pred             CCEEEECCCCCEEEECCCCCCCCCCCCCEECCCCCEEEEEEEC-CCEEEEE-CCCCEEEEEEECCCCCCCEEEEEEEEEC
T ss_conf             7278988899899914866754320110002688438999525-7403750-7853221369978877630379998602


Q ss_pred             CCEEEEEECCCCCEEE--EEEE---C-CCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEECC----CCEEE
Q ss_conf             9909999888998248--9981---4-89985899991699909999817992999989999066999624----71246
Q 004603          618 DRTVRVWDTENPDYSL--RTFT---G-HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVC----NLMPI  687 (743)
Q Consensus       618 Dg~IriWDl~~~~~~i--~~~~---g-h~~~V~sl~fsp~g~~lL~Sgs~Dg~IriWDl~s~~~v~~l~~~----~~i~~  687 (743)
                      .+.|..||+.......  ..+.   + .....-.+++..+|. ++++....+.|.+||.+.+..+..+...    +.++|
T Consensus       197 ~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~Gn-lyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~af  275 (314)
T d1pjxa_         197 TKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNN-LLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHF  275 (314)
T ss_dssp             TTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCC-EEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEE
T ss_pred             CCCEEEEECCCCCCCCEEEEEEECCCCCCCCCEEEEEECCCC-EEEEECCCCEEEEEECCCCEEEEEEECCCCCEEEEEE
T ss_conf             431177611676543015689971335666410257834785-7999827999999969999799999799998789999


Q ss_pred             ECCCCEEEEE-ECCCEEEE
Q ss_conf             3079999999-65985999
Q 004603          688 ILKGCFILNS-IFNCYLLL  705 (743)
Q Consensus       688 s~~g~~l~sg-s~Dg~i~i  705 (743)
                      .++++.|+.. +.++.|..
T Consensus       276 g~d~~~lyVt~~~~g~i~~  294 (314)
T d1pjxa_         276 KPQTKTIFVTEHENNAVWK  294 (314)
T ss_dssp             CTTSSEEEEEETTTTEEEE
T ss_pred             ECCCCEEEEEECCCCCEEE
T ss_conf             2898999999878991999

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.43  E-value=0.0021  Score=34.06  Aligned_cols=32  Identities=19%  Similarity=0.146  Sum_probs=14.4

Q ss_pred             EEEEEECCCCCEEEEE-ECC---CEEEEEECCCCCE
Q ss_conf             7999996999989999-599---9099998889982
Q 004603          600 ITDVRFSPSLSRLATS-SAD---RTVRVWDTENPDY  631 (743)
Q Consensus       600 V~~vafsp~~~~LvSg-s~D---g~IriWDl~~~~~  631 (743)
                      +..+.|.+++.+++.. ..+   ..|.++|+.++..
T Consensus       257 ~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~  292 (465)
T d1xfda1         257 ITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVC  292 (465)
T ss_dssp             EEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCE
T ss_pred             EEEEEECCCCEEEEEEECCCCCCCEEEEECCCCCCE
T ss_conf             456687579938999974100301379970799927

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.15  E-value=0.022  Score=27.73  Aligned_cols=151  Identities=13%  Similarity=-0.030  Sum_probs=90.5

Q ss_pred             CCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEECCC----CCCEEEEEECCCCCEEEEEEC----CCEEEEEECC
Q ss_conf             99689999289999999958992999977998188997046----977799999699998999959----9909999888
Q 004603          556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEH----TQWITDVRFSPSLSRLATSSA----DRTVRVWDTE  627 (743)
Q Consensus       556 ~~V~si~fspdg~~Lasgs~Dg~V~IWDl~s~~~~~~l~~H----~~~V~~vafsp~~~~LvSgs~----Dg~IriWDl~  627 (743)
                      ..+.++++.++++++++ +.+ .+.++|..+++........    ...+.++.+.|++.+.++...    .+.-.+|.+.
T Consensus        59 ~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~  136 (295)
T d2ghsa1          59 FMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA  136 (295)
T ss_dssp             SCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE
T ss_pred             CCCEEEEEECCCCEEEE-EEC-CCEEEECCCCEEEEEEEEECCCCCCCCEEEEECCCCCEEEEECCCCCCCCCEEEEEEC
T ss_conf             98179899659988999-737-6389504645135786640478766101357979999988742643133330576622


Q ss_pred             CCCEEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCE-----EEEEEE---C----CCCEEEECCCCEEE
Q ss_conf             99824899814899858999916999099998179929999899990-----669996---2----47124630799999
Q 004603          628 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-----CAGVFK---V----CNLMPIILKGCFIL  695 (743)
Q Consensus       628 ~~~~~i~~~~gh~~~V~sl~fsp~g~~lL~Sgs~Dg~IriWDl~s~~-----~v~~l~---~----~~~i~~s~~g~~l~  695 (743)
                      .+.. ...+. .-.....++|++++..++++-+..+.|..+++....     ....+.   .    ...+++..+|++.+
T Consensus       137 ~g~~-~~~~~-~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWv  214 (295)
T d2ghsa1         137 KGKV-TKLFA-DISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWN  214 (295)
T ss_dssp             TTEE-EEEEE-EESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEE
T ss_pred             CCCE-EEEEE-CCCCCCEEEECCCCCEEEEEECCCCEEEEEEECCCCCCCCCCEEEEECCCCCCCCCCCEEECCCCCEEE
T ss_conf             9968-99865-068764024658776689851566324676453555532453578841675556663267869999895


Q ss_pred             EEECCCEEEEEECCC
Q ss_conf             996598599995631
Q 004603          696 NSIFNCYLLLHRIFL  710 (743)
Q Consensus       696 sgs~Dg~i~i~~~~v  710 (743)
                      +....+.|..++...
T Consensus       215 a~~~~g~V~~~dp~G  229 (295)
T d2ghsa1         215 ARWGEGAVDRYDTDG  229 (295)
T ss_dssp             EEETTTEEEEECTTC
T ss_pred             EEECCCCEEEECCCC
T ss_conf             320788468856999

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=95.56  E-value=0.039  Score=26.20  Aligned_cols=68  Identities=15%  Similarity=0.223  Sum_probs=39.2

Q ss_pred             EEEECCCCCEEEEEECCCCCEEEEEEC-CC-----CEEEEECCCCEEEEEEC------CCCCCEEEEEECCCCCEEEEEE
Q ss_conf             984079999689999289999999958-99-----29999779981889970------4697779999969999899995
Q 004603          549 QLIPASTSKVESCHFSPDGKLLATGGH-DK-----KAVLWCTESFTVKSTLE------EHTQWITDVRFSPSLSRLATSS  616 (743)
Q Consensus       549 ~~l~~H~~~V~si~fspdg~~Lasgs~-Dg-----~V~IWDl~s~~~~~~l~------~H~~~V~~vafsp~~~~LvSgs  616 (743)
                      ..+..+.+.+...+|||||+.||.... ++     .|.+++..+++......      ..........|+|++..++...
T Consensus        34 ~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~  113 (281)
T d1k32a2          34 RKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTD  113 (281)
T ss_dssp             EEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEEC
T ss_pred             EEEECCCCCCCCEEECCCCCEEEEEEEECCCCCCEEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEE
T ss_conf             99766998526779878999899998628987722899998259952886416887547644434310279887799997

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=95.49  E-value=0.041  Score=26.05  Aligned_cols=138  Identities=9%  Similarity=0.062  Sum_probs=88.6

Q ss_pred             CEEEEEECCCCCEEEEEECC----CCEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEE-EEEECCCEEEEEECCCCC-
Q ss_conf             96899992899999999589----929999779981889970469777999996999989-999599909999888998-
Q 004603          557 KVESCHFSPDGKLLATGGHD----KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL-ATSSADRTVRVWDTENPD-  630 (743)
Q Consensus       557 ~V~si~fspdg~~Lasgs~D----g~V~IWDl~s~~~~~~l~~H~~~V~~vafsp~~~~L-vSgs~Dg~IriWDl~~~~-  630 (743)
                      .++.+.+.++|++.++...+    +.-.+|.+..++....+.. -.....++|++++..+ ++-+..+.|..+++.... 
T Consensus       104 ~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~-~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~  182 (295)
T d2ghsa1         104 RSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFAD-ISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTG  182 (295)
T ss_dssp             EEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEE-ESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTC
T ss_pred             CCEEEEECCCCCEEEEECCCCCCCCCEEEEEECCCCEEEEEEC-CCCCCEEEECCCCCEEEEEECCCCEEEEEEECCCCC
T ss_conf             1013579799999887426431333305766229968998650-687640246587766898515663246764535555


Q ss_pred             ------EEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEECC----CCEEEE-CCCCEEEEE
Q ss_conf             ------2489981489985899991699909999817992999989999066999624----712463-079999999
Q 004603          631 ------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVC----NLMPII-LKGCFILNS  697 (743)
Q Consensus       631 ------~~i~~~~gh~~~V~sl~fsp~g~~lL~Sgs~Dg~IriWDl~s~~~v~~l~~~----~~i~~s-~~g~~l~sg  697 (743)
                            .....+.+.......+++..+|. ++++.-..+.|.+||. .++.+..+...    ++++|- ++...|+..
T Consensus       183 ~~~~~~~~~~~~~~~~g~pdG~~vD~~Gn-lWva~~~~g~V~~~dp-~G~~~~~i~lP~~~~T~~~FGG~d~~~LyvT  258 (295)
T d2ghsa1         183 LPTGKAEVFIDSTGIKGGMDGSVCDAEGH-IWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVT  258 (295)
T ss_dssp             CBSSCCEEEEECTTSSSEEEEEEECTTSC-EEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEE
T ss_pred             CCCCCEEEEECCCCCCCCCCCEEECCCCC-EEEEEECCCCEEEECC-CCCEEEEECCCCCCEEEEEEECCCCCEEEEE
T ss_conf             32453578841675556663267869999-8953207884688569-9928668638998527989828999999999

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.82  E-value=0.065  Score=24.82  Aligned_cols=156  Identities=6%  Similarity=-0.035  Sum_probs=90.0

Q ss_pred             CCCCCEEEEEECCCCCEEE-EEECCCCEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEEC-CCEEEEE--ECCC
Q ss_conf             7999968999928999999-9958992999977998188997046977799999699998999959-9909999--8889
Q 004603          553 ASTSKVESCHFSPDGKLLA-TGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVW--DTEN  628 (743)
Q Consensus       553 ~H~~~V~si~fspdg~~La-sgs~Dg~V~IWDl~s~~~~~~l~~H~~~V~~vafsp~~~~LvSgs~-Dg~IriW--Dl~~  628 (743)
                      .....+.++++..-+..|+ +-...+.|.+.+++.......+......+..++++|...+++-... ....++|  +++.
T Consensus        76 ~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG  155 (263)
T d1npea_          76 QDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG  155 (263)
T ss_dssp             TTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS
T ss_pred             ECCCCCCEEEEECCCCEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCCEEEEECCCCCEEEEECCCCCCEEEEECCCC
T ss_conf             01264207999636886888426789799880588167777125666872799925669279953489976899966789


Q ss_pred             CCEEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEECCCC-EEEECCCCEEEEEE-CCCEEEEE
Q ss_conf             98248998148998589999169990999981799299998999906699962471-24630799999996-59859999
Q 004603          629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNL-MPIILKGCFILNSI-FNCYLLLH  706 (743)
Q Consensus       629 ~~~~i~~~~gh~~~V~sl~fsp~g~~lL~Sgs~Dg~IriWDl~s~~~v~~l~~~~~-i~~s~~g~~l~sgs-~Dg~i~i~  706 (743)
                      ... .......-..+.++++++.+..++.+-...+.|...++........+.+... ..+..++.+++... ..+.|...
T Consensus       156 ~~~-~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~~P~~lav~~~~lYwtd~~~~~I~~~  234 (263)
T d1npea_         156 TNR-RILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSYGKNLYYTDWKTNSVIAM  234 (263)
T ss_dssp             CCC-EEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEETTEEEEEETTTTEEEEE
T ss_pred             CCC-EEEEEECCCCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCEEEEECCCCCCEEEEEECCEEEEEECCCCEEEEE
T ss_conf             972-3655303555530799504758999928999999999999976999889998689999999999999999979999


Q ss_pred             ECC
Q ss_conf             563
Q 004603          707 RIF  709 (743)
Q Consensus       707 ~~~  709 (743)
                      +..
T Consensus       235 ~~~  237 (263)
T d1npea_         235 DLA  237 (263)
T ss_dssp             ETT
T ss_pred             ECC
T ss_conf             898

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=94.69  E-value=0.07  Score=24.63  Aligned_cols=77  Identities=13%  Similarity=0.162  Sum_probs=46.5

Q ss_pred             CEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEECCCC-----EEEECCCC-
Q ss_conf             909999888998248998148998589999169990999981799299998999906699962471-----24630799-
Q 004603          619 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNL-----MPIILKGC-  692 (743)
Q Consensus       619 g~IriWDl~~~~~~i~~~~gh~~~V~sl~fsp~g~~lL~Sgs~Dg~IriWDl~s~~~v~~l~~~~~-----i~~s~~g~-  692 (743)
                      |.|.-||+.+++. +-... ......+-.....+. +++.++.|+.++.+|.++|+.+..+.....     +.+..+|+ 
T Consensus       438 G~l~A~D~~tGk~-~W~~~-~~~~~~gg~l~Tagg-lVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkq  514 (560)
T d1kv9a2         438 GALLAWDPVKQKA-AWKVP-YPTHWNGGTLSTAGN-LVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQ  514 (560)
T ss_dssp             EEEEEEETTTTEE-EEEEE-ESSSCCCCEEEETTT-EEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             CCEEEEECCCCEE-EEECC-CCCCCCCCEEEECCC-EEEEECCCCCEEEEECCCCCEEEEEECCCCCCCCCEEEEECCEE
T ss_conf             6468870778837-31025-788887740598799-89997789819999999985827998999955167799989999


Q ss_pred             EEEEEE
Q ss_conf             999996
Q 004603          693 FILNSI  698 (743)
Q Consensus       693 ~l~sgs  698 (743)
                      ||++..
T Consensus       515 yv~v~a  520 (560)
T d1kv9a2         515 YVAIMA  520 (560)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
T ss_conf             999991

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=94.59  E-value=0.074  Score=24.48  Aligned_cols=145  Identities=12%  Similarity=0.048  Sum_probs=62.3

Q ss_pred             CCEEEEEECCCCCEEEEEECC------CCEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCC----------
Q ss_conf             996899992899999999589------9299997799818899704697779999969999899995999----------
Q 004603          556 SKVESCHFSPDGKLLATGGHD------KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR----------  619 (743)
Q Consensus       556 ~~V~si~fspdg~~Lasgs~D------g~V~IWDl~s~~~~~~l~~H~~~V~~vafsp~~~~LvSgs~Dg----------  619 (743)
                      ..+....|+|+++.|+.....      ..+...+........ .  +......+.+.+....++....+.          
T Consensus        95 ~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (281)
T d1k32a2          95 MFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVP-L--NLGPATHILFADGRRVIGRNTFELPHWKGYRGGT  171 (281)
T ss_dssp             ECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEE-C--CSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTT
T ss_pred             CCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEECCCCCEEEE-E--CCCCCCEEEECCCCEEEEEECCCCCEEEEECCCC
T ss_conf             443431027988779999713787652024651587760688-0--1786523464699849886204664044420588


Q ss_pred             -EEEEEECCCCCEEEEEEECCCCCEEEEEEECCCCCEEEEEECC--CCEEEEECCCCEEEEEEECC---CCEEEECCCCE
Q ss_conf             -0999988899824899814899858999916999099998179--92999989999066999624---71246307999
Q 004603          620 -TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN--SEIRYWSINNGSCAGVFKVC---NLMPIILKGCF  693 (743)
Q Consensus       620 -~IriWDl~~~~~~i~~~~gh~~~V~sl~fsp~g~~lL~Sgs~D--g~IriWDl~s~~~v~~l~~~---~~i~~s~~g~~  693 (743)
                       ...++.... .. ...............+.++  .++.....+  ..|.++|+..+.... +...   ....++++|..
T Consensus       172 ~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~d~~g~~~~~-lt~~~~~~~~~~SpDG~~  246 (281)
T d1k32a2         172 RGKIWIEVNS-GA-FKKIVDMSTHVSSPVIVGH--RIYFITDIDGFGQIYSTDLDGKDLRK-HTSFTDYYPRHLNTDGRR  246 (281)
T ss_dssp             CCEEEEEEET-TE-EEEEECCSSCCEEEEEETT--EEEEEECTTSSCEEEEEETTSCSCEE-CCCCCSSCEEEEEESSSC
T ss_pred             CCEEEEECCC-CC-EEECCCCCCCCCEEEEECC--CCCEECCCCCCCCEEEEECCCCCEEE-EECCCCCCCCCCCCCCCE
T ss_conf             6204441136-61-2240477666421331035--32000113455212899689996598-105898644328679899


Q ss_pred             EEEEECCCEEEEEECC
Q ss_conf             9999659859999563
Q 004603          694 ILNSIFNCYLLLHRIF  709 (743)
Q Consensus       694 l~sgs~Dg~i~i~~~~  709 (743)
                      |+... ++.+.+.+..
T Consensus       247 I~f~~-~~~l~~~d~~  261 (281)
T d1k32a2         247 ILFSK-GGSIYIFNPD  261 (281)
T ss_dssp             EEEEE-TTEEEEECTT
T ss_pred             EEEEE-CCEEEEEECC
T ss_conf             99985-9999999899

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.80  E-value=0.11  Score=23.47  Aligned_cols=151  Identities=7%  Similarity=-0.048  Sum_probs=93.7

Q ss_pred             CCCCCEEEEEECCCCCEEEE-EECCCCEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEEC--CCEEEEEECCCC
Q ss_conf             79999689999289999999-958992999977998188997046977799999699998999959--990999988899
Q 004603          553 ASTSKVESCHFSPDGKLLAT-GGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA--DRTVRVWDTENP  629 (743)
Q Consensus       553 ~H~~~V~si~fspdg~~Las-gs~Dg~V~IWDl~s~~~~~~l~~H~~~V~~vafsp~~~~LvSgs~--Dg~IriWDl~~~  629 (743)
                      .....+.++++...+..|+. -...+.|.+.+++.......+.........++++|...+++-...  .+.|...+++..
T Consensus        74 ~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs  153 (266)
T d1ijqa1          74 RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV  153 (266)
T ss_dssp             SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred             CCCCCCCEEEEEECCCEEEEEECCCCEEEEEECCCCEEEEEECCCCCCCCEEEEECCCCEEEEECCCCCCCEEEECCCCC
T ss_conf             89998546898642652899954899998576489537888727998833699980039488712699730268636888


Q ss_pred             CEEEEEEE-CCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEECCCC----EEEECCCCEEEEEE-CCCEE
Q ss_conf             82489981-48998589999169990999981799299998999906699962471----24630799999996-59859
Q 004603          630 DYSLRTFT-GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNL----MPIILKGCFILNSI-FNCYL  703 (743)
Q Consensus       630 ~~~i~~~~-gh~~~V~sl~fsp~g~~lL~Sgs~Dg~IriWDl~s~~~v~~l~~~~~----i~~s~~g~~l~sgs-~Dg~i  703 (743)
                      .  ...+. ..-..+.++++++.+..++.+-...+.|...++....+...+.....    ..+..++.+|+... .++.|
T Consensus       154 ~--~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~~~~ly~td~~~~~I  231 (266)
T d1ijqa1         154 D--IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAI  231 (266)
T ss_dssp             C--EEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEETTTTEE
T ss_pred             C--EECCCCCCCCEEEEEEEECCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCCCCEEEEEECCEEEEEECCCCEE
T ss_conf             3--44120045320169986133569999528967999998999977999938985566479999899999998999969


Q ss_pred             EE
Q ss_conf             99
Q 004603          704 LL  705 (743)
Q Consensus       704 ~i  705 (743)
                      ..
T Consensus       232 ~~  233 (266)
T d1ijqa1         232 FS  233 (266)
T ss_dssp             EE
T ss_pred             EE
T ss_conf             99

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=92.89  E-value=0.15  Score=22.58  Aligned_cols=76  Identities=7%  Similarity=0.050  Sum_probs=44.8

Q ss_pred             CEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEECCCC-----EEEECCCC-
Q ss_conf             909999888998248998148998589999169990999981799299998999906699962471-----24630799-
Q 004603          619 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNL-----MPIILKGC-  692 (743)
Q Consensus       619 g~IriWDl~~~~~~i~~~~gh~~~V~sl~fsp~g~~lL~Sgs~Dg~IriWDl~s~~~v~~l~~~~~-----i~~s~~g~-  692 (743)
                      |.|.-||+.+++. +-...... ...+=.....+. +++.++.|+.++.+|.++|+.+.++.....     +.+..+|+ 
T Consensus       457 G~l~AiD~~tGk~-~W~~~~~~-p~~gg~lstagg-lVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQ  533 (573)
T d1kb0a2         457 GRLLAWDPVAQKA-AWSVEHVS-PWNGGTLTTAGN-VVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQ  533 (573)
T ss_dssp             EEEEEEETTTTEE-EEEEEESS-SCCCCEEEETTT-EEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             CCEEEECCCCCCE-EEEECCCC-CCCCCEEEECCC-EEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEECCEE
T ss_conf             6178757877866-70516889-887760798699-89997799919999999886857998989945167799989999


Q ss_pred             EEEEE
Q ss_conf             99999
Q 004603          693 FILNS  697 (743)
Q Consensus       693 ~l~sg  697 (743)
                      ||+..
T Consensus       534 Yv~v~  538 (573)
T d1kb0a2         534 YVSVA  538 (573)
T ss_dssp             EEEEE
T ss_pred             EEEEE
T ss_conf             99999

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=92.87  E-value=0.15  Score=22.56  Aligned_cols=12  Identities=25%  Similarity=0.227  Sum_probs=8.1

Q ss_pred             CEEEEECCCCCC
Q ss_conf             909996799534
Q 004603          731 DSCCSHRELYLY  742 (743)
Q Consensus       731 G~V~iWd~~~l~  742 (743)
                      -.|.+|+..|||
T Consensus       373 ~~~e~y~Ppyl~  384 (387)
T d1k3ia3         373 FDAQIFTPNYLY  384 (387)
T ss_dssp             CEEEEEECGGGB
T ss_pred             CEEEEECCHHCC
T ss_conf             148998260405

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=92.44  E-value=0.17  Score=22.21  Aligned_cols=77  Identities=14%  Similarity=0.050  Sum_probs=45.0

Q ss_pred             CCEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEECCCC-----EEEECCCC
Q ss_conf             9909999888998248998148998589999169990999981799299998999906699962471-----24630799
Q 004603          618 DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNL-----MPIILKGC  692 (743)
Q Consensus       618 Dg~IriWDl~~~~~~i~~~~gh~~~V~sl~fsp~g~~lL~Sgs~Dg~IriWDl~s~~~v~~l~~~~~-----i~~s~~g~  692 (743)
                      .|.|..+|+.+++. +..... .....+-.....+. +++.++.|+.++.+|.++++.+.++.....     +.+..+|+
T Consensus       443 ~G~l~AiD~~TG~~-~W~~~~-~~~~~~g~l~Tagg-lVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGk  519 (571)
T d2ad6a1         443 MGQIRAFDLTTGKA-KWTKWE-KFAAWGGTLYTKGG-LVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGK  519 (571)
T ss_dssp             CEEEEEECTTTCCE-EEEEEE-SSCCCSBCEEETTT-EEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred             CCCEEEECCCCCCE-EEECCC-CCCCCCCEEEECCC-EEEEECCCCEEEEEECCCCCEEEEEECCCCCEECCEEEEECCE
T ss_conf             56178853677846-427678-99987560596699-7999778996999999998687899899996515648988999


Q ss_pred             -EEEEE
Q ss_conf             -99999
Q 004603          693 -FILNS  697 (743)
Q Consensus       693 -~l~sg  697 (743)
                       |+++.
T Consensus       520 qYi~v~  525 (571)
T d2ad6a1         520 QYIGSM  525 (571)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
T ss_conf             999999

>d1uuja_ a.221.1.1 (A:) Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
superfamily: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
family: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
domain: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.44  E-value=0.035  Score=26.50  Aligned_cols=33  Identities=21%  Similarity=0.334  Sum_probs=29.0

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCC
Q ss_conf             887999999996228969999999860799999
Q 004603            9 DKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTD   41 (743)
Q Consensus         9 ~~~l~~yiydyl~k~~~~~~a~~~~~e~~~~~~   41 (743)
                      +.-||--|++||..+|+.++|.+|.+|+.++.+
T Consensus         7 ~eeL~kaI~~Yl~~~~~~~~~~~l~~e~~l~~~   39 (76)
T d1uuja_           7 RDELNRAIADYLRSNGYEEAYSVFKKEAELDMN   39 (76)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCC
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCC
T ss_conf             999999999999988829999999998778987

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=90.77  E-value=0.26  Score=21.10  Aligned_cols=119  Identities=10%  Similarity=0.029  Sum_probs=71.8

Q ss_pred             EEEEECCC---CEEEEEECCCCCCEEEEEECCCCCEEEEEE-CCCEEEEEECCCC----------CEEEEEEECCCCCEE
Q ss_conf             99997799---818899704697779999969999899995-9990999988899----------824899814899858
Q 004603          579 AVLWCTES---FTVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENP----------DYSLRTFTGHSTTVM  644 (743)
Q Consensus       579 V~IWDl~s---~~~~~~l~~H~~~V~~vafsp~~~~LvSgs-~Dg~IriWDl~~~----------~~~i~~~~gh~~~V~  644 (743)
                      +.+-|.+.   ...++.+.... ....+.++|++.++++++ .+.+|.|+|++.-          ..++..-....-...
T Consensus       254 V~VVD~~~~~~~~v~~yIPVpK-sPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPL  332 (459)
T d1fwxa2         254 VKVVDGRKEASSLFTRYIPIAN-NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPL  332 (459)
T ss_dssp             EEEEECSGG--CSSEEEEEEES-SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEE
T ss_pred             CEEECCCCCCCCCEEEEEECCC-CCCCEEECCCCCEEEEECCCCCCEEEEEEHHHHHHHCCCCCCCCCEEEECCCCCCCC
T ss_conf             4661542367852038986589-877338899997899938858957999822535665046884521796113576766


Q ss_pred             EEEEECCCCCEEEEEECCCCEEEEECCCC----------EEEEEEECC-----CC----EEEECCCCEEEEEEC
Q ss_conf             99991699909999817992999989999----------066999624-----71----246307999999965
Q 004603          645 SLDFHPSKEDLLCSCDNNSEIRYWSINNG----------SCAGVFKVC-----NL----MPIILKGCFILNSIF  699 (743)
Q Consensus       645 sl~fsp~g~~lL~Sgs~Dg~IriWDl~s~----------~~v~~l~~~-----~~----i~~s~~g~~l~sgs~  699 (743)
                      ..+|...| +.+.|.--|..|.-|++...          ..+..+..|     ..    -...++|+|+++...
T Consensus       333 ht~fd~~g-~aytslfids~v~kw~~~~~~~~~~~~~~~~v~~k~~v~y~~gh~~~~~g~t~~~dgk~l~~~nk  405 (459)
T d1fwxa2         333 HTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSK  405 (459)
T ss_dssp             EEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEES
T ss_pred             CCCCCCCC-EEEEEEECCCEEEEEECCHHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCEEEEECC
T ss_conf             20338984-29998612316999734405566446667731135433457887745767867888878998034

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=90.37  E-value=0.28  Score=20.89  Aligned_cols=77  Identities=13%  Similarity=0.126  Sum_probs=48.3

Q ss_pred             CCEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEECCCC-----EEEECCCC
Q ss_conf             9909999888998248998148998589999169990999981799299998999906699962471-----24630799
Q 004603          618 DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNL-----MPIILKGC  692 (743)
Q Consensus       618 Dg~IriWDl~~~~~~i~~~~gh~~~V~sl~fsp~g~~lL~Sgs~Dg~IriWDl~s~~~v~~l~~~~~-----i~~s~~g~  692 (743)
                      -|.|.-||+.+++. +-... +...+.+-.....+. +++.++.|+.++.+|.++|+.+.++.....     +.+..+|+
T Consensus       452 ~G~l~A~D~~TG~~-~W~~~-~~~~~~gg~lsTagg-lVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~tY~~dGk  528 (596)
T d1w6sa_         452 LGQIKAYNAITGDY-KWEKM-ERFAVWGGTMATAGD-LVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGT  528 (596)
T ss_dssp             CEEEEEECTTTCCE-EEEEE-ESSCCCSBCEEETTT-EEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred             CCEEEEEECCCCCE-ECCCC-CCCCCCCCEEEECCC-EEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEECCE
T ss_conf             55389980788856-23327-888874414686699-7999789995999999998483699899995407768998999


Q ss_pred             -EEEEE
Q ss_conf             -99999
Q 004603          693 -FILNS  697 (743)
Q Consensus       693 -~l~sg  697 (743)
                       ||+..
T Consensus       529 QYvav~  534 (596)
T d1w6sa_         529 QYVAIY  534 (596)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
T ss_conf             999999

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=86.71  E-value=0.49  Score=19.37  Aligned_cols=60  Identities=12%  Similarity=0.148  Sum_probs=24.8

Q ss_pred             CCEEEEEECCCCCEE-EEEEE-CCCCCEEEEEEECCCCCEEEEEECCC--CEEEEECCCCEEEE
Q ss_conf             990999988899824-89981-48998589999169990999981799--29999899990669
Q 004603          618 DRTVRVWDTENPDYS-LRTFT-GHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAG  677 (743)
Q Consensus       618 Dg~IriWDl~~~~~~-i~~~~-gh~~~V~sl~fsp~g~~lL~Sgs~Dg--~IriWDl~s~~~v~  677 (743)
                      ++.|...++...... ...+. .+...+..-.+...+..+++..-.++  .|+++++..+....
T Consensus       310 ~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~~~~~l~v~~~~~~~~~~  373 (430)
T d1qfma1         310 NYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLK  373 (430)
T ss_dssp             TCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEE
T ss_pred             CCEEEEECCCCCCCCCCEEEECCCCCCEEEEEEEEECCEEEEEEECCCEEEEEEEECCCCCEEE
T ss_conf             5415873477876554158951367525556789779999999991887089999899995888

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=85.18  E-value=0.59  Score=18.89  Aligned_cols=77  Identities=9%  Similarity=0.086  Sum_probs=48.1

Q ss_pred             CCEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEECCCC-----EEEECCCC
Q ss_conf             9909999888998248998148998589999169990999981799299998999906699962471-----24630799
Q 004603          618 DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNL-----MPIILKGC  692 (743)
Q Consensus       618 Dg~IriWDl~~~~~~i~~~~gh~~~V~sl~fsp~g~~lL~Sgs~Dg~IriWDl~s~~~v~~l~~~~~-----i~~s~~g~  692 (743)
                      .|.|.-+|+.+++. +.....+. ++.+-.....+. +++.++.|+.++.+|.++|+.+..++....     +.+..+|+
T Consensus       465 ~G~l~AiD~~TG~i-~W~~~~~~-p~~~g~lstagg-lVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~  541 (582)
T d1flga_         465 VGSLRAMDPVSGKV-VWEHKEHL-PLWAGVLATAGN-LVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGE  541 (582)
T ss_dssp             SEEEEEECTTTCCE-EEEEEESS-CCCSCCEEETTT-EEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred             CCEEEEECCCCCCE-EEECCCCC-CCCCCEEEECCC-EEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEECCE
T ss_conf             77599980789958-73267799-974501697698-6999679996999999998686798899996216779998999


Q ss_pred             -EEEEE
Q ss_conf             -99999
Q 004603          693 -FILNS  697 (743)
Q Consensus       693 -~l~sg  697 (743)
                       |++..
T Consensus       542 qYv~i~  547 (582)
T d1flga_         542 QYLGVT  547 (582)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
T ss_conf             999999

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=83.59  E-value=0.69  Score=18.47  Aligned_cols=123  Identities=13%  Similarity=0.143  Sum_probs=76.6

Q ss_pred             EEEEEE--CC-CCC-EEEEEECCCCEEEEECC---C----CEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEEC
Q ss_conf             689999--28-999-99999589929999779---9----8188997046977799999699998999959990999988
Q 004603          558 VESCHF--SP-DGK-LLATGGHDKKAVLWCTE---S----FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT  626 (743)
Q Consensus       558 V~si~f--sp-dg~-~Lasgs~Dg~V~IWDl~---s----~~~~~~l~~H~~~V~~vafsp~~~~LvSgs~Dg~IriWDl  626 (743)
                      |+.+++  ++ ++. ++++...++.+..|.+.   .    .+.++.|.. ...+..|.++.....|+.+-.+.-|..+++
T Consensus       130 vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~-~~q~EGCVvDde~~~LyisEE~~Giw~~~a  208 (353)
T d1h6la_         130 VYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKM-NSQTEGMAADDEYGSLYIAEEDEAIWKFSA  208 (353)
T ss_dssp             CCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEEC-SSCEEEEEEETTTTEEEEEETTTEEEEEES
T ss_pred             CEEEEEEECCCCCEEEEEEECCCCEEEEEEEECCCCCCEEEEEEECCCC-CCCCCEEEEECCCCCEEEECCCCCEEEEEE
T ss_conf             5699977427778079999758860899999747897255576303588-886216998178894999547552388880


Q ss_pred             CCCC----EEEEEEEC--CCCCEEEEEEEC--CCC-CEEEEEECCCCEEEEECCC-CEEEEEEEC
Q ss_conf             8998----24899814--899858999916--999-0999981799299998999-906699962
Q 004603          627 ENPD----YSLRTFTG--HSTTVMSLDFHP--SKE-DLLCSCDNNSEIRYWSINN-GSCAGVFKV  681 (743)
Q Consensus       627 ~~~~----~~i~~~~g--h~~~V~sl~fsp--~g~-~lL~Sgs~Dg~IriWDl~s-~~~v~~l~~  681 (743)
                      ....    ..+....+  ...-+-.|+.-.  ++. ++++|.-.+.+..+||... ...+..|..
T Consensus       209 ~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~~~~g~F~i  273 (353)
T d1h6la_         209 EPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQNKYVADFQI  273 (353)
T ss_dssp             STTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEEE
T ss_pred             CCCCCCCCEEEECCCCCCCCCCCCCCEEEECCCCCEEEEEECCCCCEEEEEECCCCCCCCCEEEE
T ss_conf             45777662243113675445785453799847998599997379976999956788653325998