Citrus Sinensis ID: 004606

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740---
MTDTTDDIAEEISFQSFDDDCKLLGNLLNDVLQREVGSESMERVERTRVLAQSACTMRLSGIEDTAELLEKQLASEISKMTLEEALILARAFSHYLNLMGIAETHHRVRKSRNVAHLSKSCDDIFSKLVQGGISPDELYDTVCKQEVEIVLTAHPTQINRRTLQYKHLRLSHLLDYNDRPDLGHEDREMQIEDMMREITSVWQTDELRRHKPTPVDEARAGLNIVEQSLWKAVPHYLRRVSNALKKHTGKPLPLTCAPIRFGSWMGGDRDGNPNVTAKVTRDVSLLSRWMAIDLYIREVDSLRFELSMNRCSDRMSRLAHDILERETSSGDRHESWNQALSRNQLKHHGQQAPSLPTQLPARADLPSCTECNDGGSHYPKLELPVTDYIPLSGQDSTGPESPCQNACNNTSKPAANGDGASSNSYQAGISCNSSFASKPLLAQRKIFAESQIGRSSFQKLLEPSLPQRSGIAPYRIVLGNVKEKLMKTRRRLELLLEDLPCDFDPWDYYETLDQLLEPLLLCYESLQSCGSGVLADGRLGDLIRRVVTFGMVLMKLDLRQESGRHAEALDAITRYLDMGTYSEWDEDKKLEFLTRELKGKRPLVPPTIEVPSDVKEVLDTFRVAAELGSDSLGAYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVCVLCREFLDSVICRFHGYCGCYRVILDR
ccccccccccccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHccccHHHHHHHHccccEEEccccccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHcccccccEEEcccccHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHcHHHHHHHHHHcHHHHHHHHHHcccccEEEcccccccccccccccHHHHHHHHHHcc
cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHccccHHHHHHHHHHccEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEcHHHHHHHccccccHHHHcccccHcHccccccccccccccccccccEcccccccccccccccHHccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHccHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHcccHHHHHHHHHHHHHHHHHcccccEcccHHHHHHHHHHHcccEEEEEEcccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHcccHHccHEEEEccccHHHHHHHHHHHHHcccccccccccccccccccEEccHccHHHHHHHHHHHHHHHcHHHHHHHHHHHcccccEEEEEHHHHHHHHEHHHccccccEEEEEcc
MTDTTDDIAEEISFQSFDDDCKLLGNLLNDVLQREVGSESMERVERTRVLAQSACTMRLSGIEDTAELLEKQLASEISKMTLEEALILARAFSHYLNLMGIAETHHRVRKSRNVAHLSKSCDDIFSKLvqggispdelyDTVCKQEVEIVLTahptqinrrTLQYKHLRLSHlldyndrpdlghedrEMQIEDMMREITSVwqtdelrrhkptpvdearaGLNIVEQSLWKAVPHYLRRVSNALkkhtgkplpltcapirfgswmggdrdgnpnvtakvTRDVSLLSRWMAIDLYIREVDSLRFELSMNRCSDRMSRLAHDILeretssgdrheswNQALSRNqlkhhgqqapslptqlparadlpsctecndggshypklelpvtdyiplsgqdstgpespcqnacnntskpaangdgassnsyqagiscnssfaskPLLAQRKIFAESQIGRSSFqkllepslpqrsgiapyriVLGNVKEKLMKTRRRLELLLedlpcdfdpwdyYETLDQLLEPLLLCYESlqscgsgvladgrlgDLIRRVVTFGMVLMKLDLRQESGRHAEALDAITRYLdmgtysewdedkKLEFLTRElkgkrplvpptievpsdVKEVLDTFRVAAELGSDSLGAYVISMASNASDVLAVELLQKDARLAvsgelgrpcpggtlrvvplfetvtdlrGAGLVIRKLLSIDWYRKHIIKNHNGHQEVCVLCREFLDSVICRfhgycgcyrvildr
MTDTTDDIAEEISFQSFDDDCKLLGNLLNDVLQrevgsesmerverTRVLAQSACTMRLSGIEDTAELLEKQLASEISKMTLEEALILARAFSHYLNLMGIAETHHRVRKSRNVAHLSKSCDDIFSKLVQGGISPDELYDTVCKQEVEIVltahptqinrrtLQYKHLRLSHlldyndrpdlgHEDREMQIEDMMREITSvwqtdelrrhkptpvdearaglNIVEQSLWKAVPHYLRRVSNAlkkhtgkplpltCAPIRFGSWmggdrdgnpnvtaKVTRDVSLLSRWMAIDLYIREVDSLRFELSMNRCSDRMSRLAHDILEretssgdrhESWNQALSRNQLKHHGQQAPSLPTQLPARADLPSCTECNDGGSHYPKLELPVTDYIPLSGQDSTGPESPCQNACNNTSKPAANGDGASSNSYQAGISCNSSFASKPLLAQRKIFAESQIGRSSFQKLLepslpqrsgiapyrivlgnvkeKLMKTRRRLELLLEDLPCDFDPWDYYETLDQLLEPLLLCYESLQSCgsgvladgrlGDLIRRVVTFGMVLMKLDLRQESGRHAEALDAITRYLDMGTYSEWDEDKKLEFLTrelkgkrplvpptievpsdvkEVLDTFRVAAELGSDSLGAYVISMASNASDVLAVELLQKDARLAVSgelgrpcpggtlrVVPLFetvtdlrgaglVIRKLLSIDWYRKHIIKNHNGHQEVCVLCREFLDSVICRFHGYCGCYRVILDR
MTDTTDDIAEEISFQSFDDDCKLLGNLLNDVLQREVGSESMERVERTRVLAQSACTMRLSGIEDTAELLEKQLASEISKMTLEEALILARAFSHYLNLMGIAETHHRVRKSRNVAHLSKSCDDIFSKLVQGGISPDELYDTVCKQEVEIVLTAHPTQINRRTLQYKHLRLSHLLDYNDRPDLGHEDREMQIEDMMREITSVWQTDELRRHKPTPVDEARAGLNIVEQSLWKAVPHYLRRVSNALKKHTGKPLPLTCAPIRFGSWMGGDRDGNPNVTAKVTRDVSLLSRWMAIDLYIREVDSLRFELSMNRCSDRMSRLAHDILERETSSGDRHESWNQALSRNQLKHHGQQAPSLPTQLPARADLPSCTECNDGGSHYPKLELPVTDYIPLSGQDSTGPESPCQNACNNTSKPAANGDGASSNSYQAGISCNSSFASKPLLAQRKIFAESQIGRSSFQKLLEPSLPQRSGIAPYRIVLGNVkeklmktrrrlellledlPCDFDPWDYYetldqlleplllcyeslQSCGSGVLADGRLGDLIRRVVTFGMVLMKLDLRQESGRHAEALDAITRYLDMGTYSEWDEDKKLEFLTRELKGKRPLVPPTIEVPSDVKEVLDTFRVAAELGSDSLGAYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVCVLCREFLDSVICRFHGYCGCYRVILDR
************SFQSFDDDCKLLGNLLNDVLQR*************RVLAQSACTMRLSGIEDTAELLEKQLASEISKMTLEEALILARAFSHYLNLMGIAETHHRVRKSRNVAHLSKSCDDIFSKLVQGGISPDELYDTVCKQEVEIVLTAHPTQINRRTLQYKHLRLSHLLDYND*******************ITSVWQ**************ARAGLNIVEQSLWKAVPHYLRRVSNALKKHTGKPLPLTCAPIRFGSWMGGDRDGNPNVTAKVTRDVSLLSRWMAIDLYIREVDSLRFELSMNRC***********************************************************************LPVTDYI********************************************************IF**********************GIAPYRIVLGNVKEKLMKTRRRLELLLEDLPCDFDPWDYYETLDQLLEPLLLCYESLQSCGSGVLADGRLGDLIRRVVTFGMVLMKLDLRQESGRHAEALDAITRYLDMGTYSEWDEDKKLEFLTRELKGKRPLVPPTIEVPSDVKEVLDTFRVAAELGSDSLGAYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVCVLCREFLDSVICRFHGYCGCYRVIL**
****************FDDDCKLLGNLLNDVLQREVGSESMERVERTRVLAQS*****************KQLASEISKMTLEEALILARAFSHYLNLMGIAETHHRV*************DDIFSKLVQGGISPDELYDTVCKQEVEIVLTAHPTQINRRTLQYKHLRLSHLLDYNDRPDLGHEDREMQIEDMMREITSVWQTDELRRHKPTPVDEARAGLNIVEQSLWKAVPHYLRRVSNALKKHTGKPLPLTCAPIRFGSWMGGDRDGNPNVTAKVTRDVSLLSRWMAIDLYIREVDSLRFELSMNRCSDRMSRLAHDILERETSSGDRHESWNQALSRNQLKHHGQQAPSLPTQLPARADLPSCTECNDGGSHYPKLELPVTDYIPLSGQDSTGPESPCQNACNNTSKPAANGDGASSNSYQAGISCNSSFASKPLLA*R*********************PQRSGIAPYRIVLGNVKEKLMKTRRRLELLLEDLPCDFDPWDYYETLDQLLEPLLLCYESLQSCGSGVLADGRLGDLIRRVVTFGMVLMKLDLRQESGRHAEALDAITRYLDMGTYSEWDEDKKLEFLTRELKGKRPLVPPTIEVPSDVKEVLDTFRVAAELGSDSLGAYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVCVLCREFLDSVICRFHGYCGCYRVIL**
MTDTTDDIAEEISFQSFDDDCKLLGNLLNDVLQRE***********TRVLAQSACTMRLSGIEDTAELLEKQLASEISKMTLEEALILARAFSHYLNLMGIAETHHRVRKSRNVAHLSKSCDDIFSKLVQGGISPDELYDTVCKQEVEIVLTAHPTQINRRTLQYKHLRLSHLLDYNDRPDLGHEDREMQIEDMMREITSVWQTDELRRHKPTPVDEARAGLNIVEQSLWKAVPHYLRRVSNALKKHTGKPLPLTCAPIRFGSWMGGDRDGNPNVTAKVTRDVSLLSRWMAIDLYIREVDSLRFELSMNRCSDRMSRLAHDILER*********SWNQALSRN**********SLPTQLPARADLPSCTECNDGGSHYPKLELPVTDYIPLSG************ACNNTSKPAANGDGASSNSYQAGISCNSSFASKPLLAQRKIFAESQIGRSSFQKLLEPSLPQRSGIAPYRIVLGNVKEKLMKTRRRLELLLEDLPCDFDPWDYYETLDQLLEPLLLCYESLQSCGSGVLADGRLGDLIRRVVTFGMVLMKLDLRQESGRHAEALDAITRYLDMGTYSEWDEDKKLEFLTRELKGKRPLVPPTIEVPSDVKEVLDTFRVAAELGSDSLGAYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVCVLCREFLDSVICRFHGYCGCYRVILDR
***TTDDIAEEISFQSFDDDCKLLGNLLNDVLQREVGSESMERVERTRVLAQSACTM*******TAELLEKQLASEISKMTLEEALILARAFSHYLNLMGIAETHHRVRKSRNVAHLSKSCDDIFSKLVQGGISPDELYDTVCKQEVEIVLTAHPTQINRRTLQYKHLRLSHLLDYNDRPDLGHEDREMQIEDMMREITSVWQTDELRRHKPTPVDEARAGLNIVEQSLWKAVPHYLRRVSNALKKHTGKPLPLTCAPIRFGSWMGGDRDGNPNVTAKVTRDVSLLSRWMAIDLYIREVDSLRFELSMNRCSDRMSRLAHDILERETSSGDRHESWNQALSRNQLKHHGQQAPSLPTQLPARADLPSCTECNDGGSHYPKLELPVTDYIPLSGQDSTGPESPCQNACNNTSKPAANGDGASSNSYQAGISCNSSFASKPLLAQRKIFAESQIGRSSFQKLLEPSLPQRSGIAPYRIVLGNVKEKLMKTRRRLELLLEDLPCDFDPWDYYETLDQLLEPLLLCYESLQSCGSGVLADGRLGDLIRRVVTFGMVLMKLDLRQESGRHAEALDAITRYLDMGTYSEWDEDKKLEFLTRELKGKRPLVPPTIEVPSDVKEVLDTFRVAAELGSDSLGAYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVCVLCREFLDSVICRFHGYCGCYRVILDR
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MTDTTDDIAEEISFQSFDDDCKLLGNLLNDVLQREVGSESMERVERTRVLAQSACTMRLSGIEDTAELLEKQLASEISKMTLEEALILARAFSHYLNLMGIAETHHRVRKSRNVAHLSKSCDDIFSKLVQGGISPDELYDTVCKQEVEIVLTAHPTQINRRTLQYKHLRLSHLLDYNDRPDLGHEDREMQIEDMMREITSVWQTDELRRHKPTPVDEARAGLNIVEQSLWKAVPHYLRRVSNALKKHTGKPLPLTCAPIRFGSWMGGDRDGNPNVTAKVTRDVSLLSRWMAIDLYIREVDSLRFELSMNRCSDRMSRLAHDILERETSSGDRHESWNQALSRNQLKHHGQQAPSLPTQLPARADLPSCTECNDGGSHYPKLELPVTDYIPLSGQDSTGPESPCQNACNNTSKPAANGDGASSNSYQAGISCNSSFASKPLLAQRKIFAESQIGRSSFQKLLEPSLPQRSGIAPYRIVxxxxxxxxxxxxxxxxxxxxxLPCDFDPWDYYETLDQLLEPLLLCYESLQSCGSGVLADGRLGDLIRRVVTFGMVLMKLDLRQESGRHAEALDAITRYLDMGTYSEWDEDKKLEFLTRELKGKRPLVPPTIEVPSDVKEVLDTFRVAAELGSDSLGAYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVCVLCREFLDSVICRFHGYCGCYRVILDR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query743 2.2.26 [Sep-21-2011]
Q8GVE8 1032 Phosphoenolpyruvate carbo yes no 0.928 0.668 0.724 0.0
Q6R2V6 1221 Phosphoenolpyruvate carbo N/A no 0.434 0.264 0.553 1e-103
A3MA94 894 Phosphoenolpyruvate carbo yes no 0.388 0.323 0.420 5e-67
A4XXP6 878 Phosphoenolpyruvate carbo yes no 0.384 0.325 0.437 4e-65
Q2SL23 881 Phosphoenolpyruvate carbo yes no 0.411 0.347 0.396 6e-65
Q4ZWV3 878 Phosphoenolpyruvate carbo yes no 0.411 0.348 0.418 1e-63
Q48F34 878 Phosphoenolpyruvate carbo yes no 0.388 0.329 0.433 2e-63
Q6F6Q6 894 Phosphoenolpyruvate carbo yes no 0.391 0.325 0.414 5e-63
Q886R9 878 Phosphoenolpyruvate carbo yes no 0.411 0.348 0.412 6e-63
Q3KHE4 876 Phosphoenolpyruvate carbo yes no 0.398 0.337 0.411 1e-62
>sp|Q8GVE8|CAPP4_ARATH Phosphoenolpyruvate carboxylase 4 OS=Arabidopsis thaliana GN=PPC4 PE=2 SV=1 Back     alignment and function desciption
 Score = 1031 bits (2667), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 521/719 (72%), Positives = 588/719 (81%), Gaps = 29/719 (4%)

Query: 1   MTDTTDDIAEEISFQSFDDDCKLLGNLLNDVLQREVGSESMERVERTRVLAQSACTMRLS 60
           MTDTTDDIAEEISFQSF+DDCKLLG+L +DVLQREVG+  ME+VER R+LAQSA  +R++
Sbjct: 1   MTDTTDDIAEEISFQSFEDDCKLLGSLFHDVLQREVGNPFMEKVERIRILAQSALNLRMA 60

Query: 61  GIEDTAELLEKQLASEISKMTLEEALILARAFSHYLNLMGIAETHHRVRKSRNVAHLSKS 120
           GIEDTA LLEKQL SEISKM LEEAL LAR F+H LNLMGIA+THHR+ K  NV  L++S
Sbjct: 61  GIEDTANLLEKQLTSEISKMPLEEALTLARTFTHSLNLMGIADTHHRMHKVHNVTQLARS 120

Query: 121 CDDIFSKLVQGGISPDELYDTVCKQEVEIVLTAHPTQINRRTLQYKHLRLSHLLDYNDRP 180
           CDDIFS+L+Q GISPDELY TVCKQEVEIVLTAHPTQINRRTLQYKH+R++HLL+YN R 
Sbjct: 121 CDDIFSQLLQSGISPDELYKTVCKQEVEIVLTAHPTQINRRTLQYKHIRIAHLLEYNTRS 180

Query: 181 DLGHEDREMQIEDMMREITSVWQTDELRRHKPTPVDEARAGLNIVEQSLWKAVPHYLRRV 240
           DL  EDRE  IED++REITS+WQTDELRR KPTPVDEARAGLNIVEQSLWKAVP YLRRV
Sbjct: 181 DLSVEDRETLIEDLVREITSLWQTDELRRQKPTPVDEARAGLNIVEQSLWKAVPQYLRRV 240

Query: 241 SNALKKHTGKPLPLTCAPIRFGSWMGGDRDGNPNVTAKVTRDVSLLSRWMAIDLYIREVD 300
           SN+LKK TGKPLPLTC P++FGSWMGGDRDGNPNVTAKVT++VSLLSRWMAIDLYIREVD
Sbjct: 241 SNSLKKFTGKPLPLTCTPMKFGSWMGGDRDGNPNVTAKVTKEVSLLSRWMAIDLYIREVD 300

Query: 301 SLRFELSMNRCSDRMSRLAHDILERETSSGDRHESWNQALSRNQLKHHGQQAPS-LPTQL 359
           SLRFELS +RCSDR SRLA  ILE++   G  +                QQ+ S LPTQL
Sbjct: 301 SLRFELSTDRCSDRFSRLADKILEKDYDRGKSN-------------FQKQQSSSCLPTQL 347

Query: 360 PARADLPSCTECNDGGSHYPKLELPVTDYIPLSGQDSTGPESPCQNACNNTSKPAANGDG 419
           PARA LP+C +   G S + K E+  TDY+P        P    QN  + +       D 
Sbjct: 348 PARAHLPACIDF--GESRHTKFEIATTDYMP--------PNLQKQNEQDFSESDWEKID- 396

Query: 420 ASSNSYQAGISCNSSFASKP-LLAQRKIFAESQIGRSSFQKLLEPSLPQRSGIAPYRIVL 478
              N  ++G++   SF+S   LL QRK+F ESQ+G++SFQKLLEP   +R+G APYRIVL
Sbjct: 397 ---NGSRSGLTSRGSFSSTSQLLLQRKLFEESQVGKTSFQKLLEPPPLKRAGSAPYRIVL 453

Query: 479 GNVKEKLMKTRRRLELLLEDLPCDFDPWDYYETLDQLLEPLLLCYESLQSCGSGVLADGR 538
           G VKEKL+KTRR LELL+E LPC++DP + YET DQLLEPLLLCYESLQS G+ VLADGR
Sbjct: 454 GEVKEKLVKTRRLLELLIEGLPCEYDPKNSYETSDQLLEPLLLCYESLQSSGARVLADGR 513

Query: 539 LGDLIRRVVTFGMVLMKLDLRQESGRHAEALDAITRYLDMGTYSEWDEDKKLEFLTRELK 598
           L DLIRRV TFGMVL+KLDLRQE+ RH+EALDAIT YLDMGTYSEWDE+KKLEFLTRELK
Sbjct: 514 LADLIRRVSTFGMVLVKLDLRQEAARHSEALDAITTYLDMGTYSEWDEEKKLEFLTRELK 573

Query: 599 GKRPLVPPTIEVPSDVKEVLDTFRVAAELGSDSLGAYVISMASNASDVLAVELLQKDARL 658
           GKRPLVP  I+V  DVKEVLDTFRVAAELGS+SLGAYVISMASNASDVLAVELLQKDARL
Sbjct: 574 GKRPLVPQCIKVGPDVKEVLDTFRVAAELGSESLGAYVISMASNASDVLAVELLQKDARL 633

Query: 659 AVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVCV 717
           A++ E G+PCPGGTLRVVPLFETV DLR AG  IRKLLSIDWYR+HI KNHNGHQEV V
Sbjct: 634 ALTSEHGKPCPGGTLRVVPLFETVNDLRAAGPSIRKLLSIDWYREHIQKNHNGHQEVMV 692
Through the carboxylation of phosphoenolpyruvate (PEP) it forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle.
Arabidopsis thaliana (taxid: 3702)
EC: 4EC: .EC: 1EC: .EC: 1EC: .EC: 3EC: 1
>sp|Q6R2V6|CAPP2_CHLRE Phosphoenolpyruvate carboxylase 2 OS=Chlamydomonas reinhardtii GN=Ppc2 PE=2 SV=1 Back     alignment and function description
>sp|A3MA94|CAPP_ACIBT Phosphoenolpyruvate carboxylase OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) GN=ppc PE=3 SV=1 Back     alignment and function description
>sp|A4XXP6|CAPP_PSEMY Phosphoenolpyruvate carboxylase OS=Pseudomonas mendocina (strain ymp) GN=ppc PE=3 SV=1 Back     alignment and function description
>sp|Q2SL23|CAPP_HAHCH Phosphoenolpyruvate carboxylase OS=Hahella chejuensis (strain KCTC 2396) GN=ppc PE=3 SV=1 Back     alignment and function description
>sp|Q4ZWV3|CAPP_PSEU2 Phosphoenolpyruvate carboxylase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=ppc PE=3 SV=1 Back     alignment and function description
>sp|Q48F34|CAPP_PSE14 Phosphoenolpyruvate carboxylase OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=ppc PE=3 SV=1 Back     alignment and function description
>sp|Q6F6Q6|CAPP_ACIAD Phosphoenolpyruvate carboxylase OS=Acinetobacter sp. (strain ADP1) GN=ppc PE=3 SV=1 Back     alignment and function description
>sp|Q886R9|CAPP_PSESM Phosphoenolpyruvate carboxylase OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=ppc PE=3 SV=1 Back     alignment and function description
>sp|Q3KHE4|CAPP_PSEPF Phosphoenolpyruvate carboxylase OS=Pseudomonas fluorescens (strain Pf0-1) GN=ppc PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query743
225423837 1061 PREDICTED: phosphoenolpyruvate carboxyla 0.965 0.675 0.814 0.0
297737886 987 unnamed protein product [Vitis vinifera] 0.965 0.726 0.814 0.0
149789412 1052 phosphoenolpyruvate carboxylase [Ricinus 0.956 0.675 0.825 0.0
147809570 1069 hypothetical protein VITISV_039478 [Viti 0.962 0.668 0.798 0.0
449458754 1077 PREDICTED: phosphoenolpyruvate carboxyla 0.965 0.665 0.781 0.0
449523009 1077 PREDICTED: LOW QUALITY PROTEIN: phosphoe 0.965 0.665 0.778 0.0
356500014 1055 PREDICTED: phosphoenolpyruvate carboxyla 0.946 0.666 0.744 0.0
297851070 1061 ATPPC4 [Arabidopsis lyrata subsp. lyrata 0.962 0.673 0.780 0.0
351726309 1032 phosphoenolpyruvate carboxylase [Glycine 0.931 0.670 0.758 0.0
254032062 1051 phosphoenolpyruvate carboxylase [Brassic 0.955 0.675 0.779 0.0
>gi|225423837|ref|XP_002280842.1| PREDICTED: phosphoenolpyruvate carboxylase 4-like [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1182 bits (3059), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 587/721 (81%), Positives = 647/721 (89%), Gaps = 4/721 (0%)

Query: 1   MTDTTDDIAEEISFQSFDDDCKLLGNLLNDVLQREVGSESMERVERTRVLAQSACTMRLS 60
           MTDTTDDIAEEISFQSFDDDC+LLG+LLN+VLQREVGS  ME+VER R+LAQSAC MR S
Sbjct: 1   MTDTTDDIAEEISFQSFDDDCRLLGSLLNEVLQREVGSNFMEKVERNRILAQSACNMRAS 60

Query: 61  GIEDTAELLEKQLASEISKMTLEEALILARAFSHYLNLMGIAETHHRVRKSRNVAHLSKS 120
           GIEDTAELLEKQL SEIS+M LEEAL LARAFSHYLNLMGIAETHHR+RK+RNVAH+SKS
Sbjct: 61  GIEDTAELLEKQLISEISQMNLEEALTLARAFSHYLNLMGIAETHHRLRKARNVAHMSKS 120

Query: 121 CDDIFSKLVQGGISPDELYDTVCKQEVEIVLTAHPTQINRRTLQYKHLRLSHLLDYNDRP 180
           CDDIF++L+QGG+SP+ELY+TVCKQEVEIVLTAHPTQINRRTLQYKH+R++HLLDYNDRP
Sbjct: 121 CDDIFNQLLQGGVSPEELYNTVCKQEVEIVLTAHPTQINRRTLQYKHIRIAHLLDYNDRP 180

Query: 181 DLGHEDREMQIEDMMREITSVWQTDELRRHKPTPVDEARAGLNIVEQSLWKAVPHYLRRV 240
           +LGHEDREM IED++REITS+WQTDELRR KPT VDEARAGLNIVEQSLW+AVPHYLRRV
Sbjct: 181 NLGHEDREMLIEDLVREITSIWQTDELRRQKPTVVDEARAGLNIVEQSLWRAVPHYLRRV 240

Query: 241 SNALKKHTGKPLPLTCAPIRFGSWMGGDRDGNPNVTAKVTRDVSLLSRWMAIDLYIREVD 300
           SNALKKHTGK LPLTC PI+FGSWMGGDRDGNPNVTA+VTRDVSLLSRWMAIDLYIREVD
Sbjct: 241 SNALKKHTGKSLPLTCTPIKFGSWMGGDRDGNPNVTAEVTRDVSLLSRWMAIDLYIREVD 300

Query: 301 SLRFELSMNRCSDRMSRLAHDILERETSSGDRHESWNQALSRNQLKHHGQQAPSLPTQLP 360
           SLRFELSMNRCSD +SRLAH+ILE+ETSS DR+ES NQ L+R+QLK + Q  P+LP QLP
Sbjct: 301 SLRFELSMNRCSDSLSRLAHEILEKETSSVDRNESRNQPLNRSQLKPYSQLGPTLPRQLP 360

Query: 361 ARADLPSCTECNDGGSHYPKLELPVTDYIPLSGQD---STGPESPCQNACNNTSKPAANG 417
           A ADLPSCTEC DG S YPKLE P TDY+PL+ QD   ++  ++  Q++  +  K   NG
Sbjct: 361 AGADLPSCTECKDGESKYPKLEFPGTDYMPLNRQDVKAASSSDTSFQDSNKDFGKTYGNG 420

Query: 418 DGA-SSNSYQAGISCNSSFASKPLLAQRKIFAESQIGRSSFQKLLEPSLPQRSGIAPYRI 476
             A SSNS  A      SF+S  LL+QRK+F+ESQ+GRSSFQKLLEPSLPQR GIAPYRI
Sbjct: 421 TVANSSNSQSAATPRTVSFSSGQLLSQRKLFSESQLGRSSFQKLLEPSLPQRPGIAPYRI 480

Query: 477 VLGNVKEKLMKTRRRLELLLEDLPCDFDPWDYYETLDQLLEPLLLCYESLQSCGSGVLAD 536
           VLGNVK+KLMKT+RRLELLLEDLPC+ DP DYYET D+LLEPLLLC+ES+QSCGSG+LAD
Sbjct: 481 VLGNVKDKLMKTQRRLELLLEDLPCEHDPGDYYETADELLEPLLLCHESMQSCGSGILAD 540

Query: 537 GRLGDLIRRVVTFGMVLMKLDLRQESGRHAEALDAITRYLDMGTYSEWDEDKKLEFLTRE 596
           GRL DLIRRV TF MVLMKLDLRQES RHAE LDAIT YLDMG YSEWDE++KL+FLTRE
Sbjct: 541 GRLADLIRRVATFRMVLMKLDLRQESARHAETLDAITSYLDMGIYSEWDEERKLDFLTRE 600

Query: 597 LKGKRPLVPPTIEVPSDVKEVLDTFRVAAELGSDSLGAYVISMASNASDVLAVELLQKDA 656
           LKGKRPLVPPTIEV +DVKEVLDTFRVAAE+GSDS GAYVISMASNASDVLAVELLQKDA
Sbjct: 601 LKGKRPLVPPTIEVVADVKEVLDTFRVAAEIGSDSFGAYVISMASNASDVLAVELLQKDA 660

Query: 657 RLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVC 716
           RLAV GELGRPC GGTLRVVPLFETV DLRGAG VIRKLLSIDWYR+HIIKNHNGHQEV 
Sbjct: 661 RLAVCGELGRPCSGGTLRVVPLFETVKDLRGAGAVIRKLLSIDWYREHIIKNHNGHQEVM 720

Query: 717 V 717
           V
Sbjct: 721 V 721

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297737886|emb|CBI27087.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|149789412|gb|ABR29877.1| phosphoenolpyruvate carboxylase [Ricinus communis] Back     alignment and taxonomy information
>gi|147809570|emb|CAN62388.1| hypothetical protein VITISV_039478 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449458754|ref|XP_004147112.1| PREDICTED: phosphoenolpyruvate carboxylase 4-like [Cucumis sativus] gi|406353253|gb|AFS33792.1| phosphoenolpyruvate carboxylase protein [Cucumis sativus] Back     alignment and taxonomy information
>gi|449523009|ref|XP_004168517.1| PREDICTED: LOW QUALITY PROTEIN: phosphoenolpyruvate carboxylase 4-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356500014|ref|XP_003518830.1| PREDICTED: phosphoenolpyruvate carboxylase 4-like [Glycine max] Back     alignment and taxonomy information
>gi|297851070|ref|XP_002893416.1| ATPPC4 [Arabidopsis lyrata subsp. lyrata] gi|297339258|gb|EFH69675.1| ATPPC4 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|351726309|ref|NP_001237378.1| phosphoenolpyruvate carboxylase [Glycine max] gi|45505267|gb|AAS67005.1| Phosphoenolpyruvate carboxylase [Glycine max] Back     alignment and taxonomy information
>gi|254032062|gb|ACT54615.1| phosphoenolpyruvate carboxylase [Brassica napus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query743
TAIR|locus:2012448 1032 PPC4 "phosphoenolpyruvate carb 0.554 0.399 0.689 1e-148
DICTYBASE|DDB_G0287723 931 DDB_G0287723 "Phosphoenolpyruv 0.418 0.334 0.384 1.2e-94
TAIR|locus:2086315 968 PPC3 "phosphoenolpyruvate carb 0.414 0.318 0.392 6.1e-93
UNIPROTKB|Q9FV66 965 PPCB "Phosphoenolpyruvate carb 0.417 0.321 0.383 2.3e-92
UNIPROTKB|Q9KNT4 876 ppc "Phosphoenolpyruvate carbo 0.398 0.337 0.368 3.8e-91
TIGR_CMR|VC_2646 876 VC_2646 "phosphoenolpyruvate c 0.398 0.337 0.368 3.8e-91
TAIR|locus:2009600 967 PPC1 "phosphoenolpyruvate carb 0.414 0.318 0.368 7e-91
UNIPROTKB|Q9FV65 967 PPCC "Phosphoenolpyruvate carb 0.417 0.320 0.382 1.5e-90
UNIPROTKB|P30694 966 PPCA "C4 phosphoenolpyruvate c 0.423 0.326 0.379 5.5e-90
UNIPROTKB|P00864 883 ppc "Ppc" [Escherichia coli K- 0.386 0.325 0.381 5.3e-88
TAIR|locus:2012448 PPC4 "phosphoenolpyruvate carboxylase 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1452 (516.2 bits), Expect = 1.0e-148, P = 1.0e-148
 Identities = 295/428 (68%), Positives = 339/428 (79%)

Query:     1 MTDTTDDIAEEISFQSFDDDCKLLGNLLNDVLQREVGSESMERVERTRVLAQSACTMRLS 60
             MTDTTDDIAEEISFQSF+DDCKLLG+L +DVLQREVG+  ME+VER R+LAQSA  +R++
Sbjct:     1 MTDTTDDIAEEISFQSFEDDCKLLGSLFHDVLQREVGNPFMEKVERIRILAQSALNLRMA 60

Query:    61 GIEDTAELLEKQLASEISKMTLEEALILARAFSHYLNLMGIAETHHRVRKSRNVAHLSKS 120
             GIEDTA LLEKQL SEISKM LEEAL LAR F+H LNLMGIA+THHR+ K  NV  L++S
Sbjct:    61 GIEDTANLLEKQLTSEISKMPLEEALTLARTFTHSLNLMGIADTHHRMHKVHNVTQLARS 120

Query:   121 CDDIFSKLVQGGISPDELYDTVCKQEVEIVLTAHPTQINRRTLQYKHLRLSHLLDYNDRP 180
             CDDIFS+L+Q GISPDELY TVCKQEVEIVLTAHPTQINRRTLQYKH+R++HLL+YN R 
Sbjct:   121 CDDIFSQLLQSGISPDELYKTVCKQEVEIVLTAHPTQINRRTLQYKHIRIAHLLEYNTRS 180

Query:   181 DLGHEDREMQIEDMMREITSVWQTDELRRHKPTPVDEARAGLNIVEQSLWKAVPHYLRRV 240
             DL  EDRE  IED++REITS+WQTDELRR KPTPVDEARAGLNIVEQSLWKAVP YLRRV
Sbjct:   181 DLSVEDRETLIEDLVREITSLWQTDELRRQKPTPVDEARAGLNIVEQSLWKAVPQYLRRV 240

Query:   241 SNALKKHTGKPLPLTCAPIRFGSWMGGDRDGNPNVTAKVTRDVSLLSRWMAIDLYIREVD 300
             SN+LKK TGKPLPLTC P++FGSWMGGDRDGNPNVTAKVT++VSLLSRWMAIDLYIREVD
Sbjct:   241 SNSLKKFTGKPLPLTCTPMKFGSWMGGDRDGNPNVTAKVTKEVSLLSRWMAIDLYIREVD 300

Query:   301 SLRFELSMNRCSDRMSRLAHDILERETSSGDRHESWNQALSRNQLKHHGQQAPSLPTQLP 360
             SLRFELS +RCSDR SRLA  ILE++    DR +S       N  K   Q +  LPTQLP
Sbjct:   301 SLRFELSTDRCSDRFSRLADKILEKDY---DRGKS-------NFQKQ--QSSSCLPTQLP 348

Query:   361 ARADLPSCTECNDGGSHYPKLELPVTDYIP--LSGQDSTGPESPCQNACNNTSKPAANGD 418
             ARA LP+C +   G S + K E+  TDY+P  L  Q+            +N S+      
Sbjct:   349 ARAHLPACIDF--GESRHTKFEIATTDYMPPNLQKQNEQDFSESDWEKIDNGSRSGLTSR 406

Query:   419 GASSNSYQ 426
             G+ S++ Q
Sbjct:   407 GSFSSTSQ 414
GO:0003824 "catalytic activity" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0006099 "tricarboxylic acid cycle" evidence=IEA;ISS
GO:0008964 "phosphoenolpyruvate carboxylase activity" evidence=IEA;ISS;IDA
GO:0015977 "carbon fixation" evidence=IEA
DICTYBASE|DDB_G0287723 DDB_G0287723 "Phosphoenolpyruvate carboxylase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
TAIR|locus:2086315 PPC3 "phosphoenolpyruvate carboxylase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q9FV66 PPCB "Phosphoenolpyruvate carboxylase 1" [Flaveria trinervia (taxid:4227)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KNT4 ppc "Phosphoenolpyruvate carboxylase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_2646 VC_2646 "phosphoenolpyruvate carboxylase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
TAIR|locus:2009600 PPC1 "phosphoenolpyruvate carboxylase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q9FV65 PPCC "Phosphoenolpyruvate carboxylase 2" [Flaveria trinervia (taxid:4227)] Back     alignment and assigned GO terms
UNIPROTKB|P30694 PPCA "C4 phosphoenolpyruvate carboxylase" [Flaveria trinervia (taxid:4227)] Back     alignment and assigned GO terms
UNIPROTKB|P00864 ppc "Ppc" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8GVE8CAPP4_ARATH4, ., 1, ., 1, ., 3, 10.72460.92860.6686yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.1.1.310.914
3rd Layer4.1.10.921

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query743
PRK00009 911 PRK00009, PRK00009, phosphoenolpyruvate carboxylas 1e-102
pfam00311 794 pfam00311, PEPcase, Phosphoenolpyruvate carboxylas 4e-91
PRK00009 911 PRK00009, PRK00009, phosphoenolpyruvate carboxylas 4e-84
COG2352 910 COG2352, Ppc, Phosphoenolpyruvate carboxylase [Ene 1e-77
COG2352 910 COG2352, Ppc, Phosphoenolpyruvate carboxylase [Ene 3e-71
PTZ00398 974 PTZ00398, PTZ00398, phosphoenolpyruvate carboxylas 2e-70
pfam00311 794 pfam00311, PEPcase, Phosphoenolpyruvate carboxylas 3e-69
PTZ00398 974 PTZ00398, PTZ00398, phosphoenolpyruvate carboxylas 3e-66
>gnl|CDD|234570 PRK00009, PRK00009, phosphoenolpyruvate carboxylase; Reviewed Back     alignment and domain information 
 Score =  334 bits (860), Expect = e-102
 Identities = 137/340 (40%), Positives = 195/340 (57%), Gaps = 22/340 (6%)

Query: 19  DDCKLLGNLLNDVLQREVGSESMERVERTRVLAQSACTMRLSGIEDTAELLEKQLASEIS 78
           +D +LLG LL D ++ + G E  + VE  R L++S+   R        ELL+      + 
Sbjct: 11  EDVRLLGRLLGDTIREQEGDEVFDLVETIRKLSKSS---RRGDDAAREELLKL-----LK 62

Query: 79  KMTLEEALILARAFSHYLNLMGIAETHHRVRKSRNVAHLSK-----SCDDIFSKLVQGGI 133
            ++ +E L +ARAFS +LNL  IAE +H +R+ R            S  +   +L   G+
Sbjct: 63  NLSNDELLPVARAFSQFLNLANIAEDYHHIRR-RREHASGSQPQPGSLAETLRRLKAAGV 121

Query: 134 SPDELYDTVCKQEVEIVLTAHPTQINRRTLQYKHLRLSHLLDYNDRPDLGHEDREMQIED 193
           SP+EL   + + ++E VLTAHPT++ RRTL  K   ++ LL   D  DL   +R      
Sbjct: 122 SPEELARALEELDIEPVLTAHPTEVQRRTLLDKQREIAALLRQLDDVDLTPRERAKIERR 181

Query: 194 MMREITSVWQTDELRRHKPTPVDEARAGLNIVEQSLWKAVPHYLRRVSNALKKHTGKPLP 253
           + R I  +WQTDE+R+ +PT VDE + GL   E SLW+AVP   R +  AL++H G  LP
Sbjct: 182 LRRLIAQLWQTDEIRQFRPTVVDEIKNGLAYYENSLWQAVPKLYRELEEALEEHFGLQLP 241

Query: 254 LTCAPIRFGSWMGGDRDGNPNVTAKVTRDVSLLSRWMAIDLYIREVDSLRFELSMNR--- 310
           L  AP+RFGSW+GGDRDGNPNVTA+VTR+V LL RW+A+DLY++E+ +L  ELSM+    
Sbjct: 242 LDAAPLRFGSWIGGDRDGNPNVTAEVTREVLLLQRWVALDLYLKELHALGSELSMSTRLV 301

Query: 311 -CSDRMSRLAHDILERETSSGDRHESWNQALS--RNQLKH 347
             S  +  LA      + S   R E + +AL   R +L  
Sbjct: 302 EVSPELRALAGA--SPDQSPHRRDEPYRRALKGIRARLAA 339

Length = 911
>gnl|CDD|215852 pfam00311, PEPcase, Phosphoenolpyruvate carboxylase Back     alignment and domain information
>gnl|CDD|234570 PRK00009, PRK00009, phosphoenolpyruvate carboxylase; Reviewed Back     alignment and domain information
>gnl|CDD|225227 COG2352, Ppc, Phosphoenolpyruvate carboxylase [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|225227 COG2352, Ppc, Phosphoenolpyruvate carboxylase [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|173589 PTZ00398, PTZ00398, phosphoenolpyruvate carboxylase; Provisional Back     alignment and domain information
>gnl|CDD|215852 pfam00311, PEPcase, Phosphoenolpyruvate carboxylase Back     alignment and domain information
>gnl|CDD|173589 PTZ00398, PTZ00398, phosphoenolpyruvate carboxylase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 743
COG2352 910 Ppc Phosphoenolpyruvate carboxylase [Energy produc 100.0
PTZ00398 974 phosphoenolpyruvate carboxylase; Provisional 100.0
PRK00009 911 phosphoenolpyruvate carboxylase; Reviewed 100.0
PF00311 794 PEPcase: Phosphoenolpyruvate carboxylase; InterPro 100.0
PRK13655 494 phosphoenolpyruvate carboxylase; Provisional 99.87
TIGR02751 506 PEPCase_arch phosphoenolpyruvate carboxylase, arch 99.69
PF14010 491 PEPcase_2: Phosphoenolpyruvate carboxylase; PDB: 3 96.46
COG1892 488 Phosphoenolpyruvate carboxylase [Carbohydrate tran 88.54
PF03328221 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family 82.89
>COG2352 Ppc Phosphoenolpyruvate carboxylase [Energy production and conversion] Back     alignment and domain information 
Probab=100.00  E-value=2.8e-143  Score=1214.91  Aligned_cols=563  Identities=40%  Similarity=0.650  Sum_probs=516.3

Q ss_pred             CchhHHHHHHHHHHHHHHHHhhhhChhHHHHHHHHHHHHHHhhhhhccCchhhHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 004606           13 SFQSFDDDCKLLGNLLNDVLQREVGSESMERVERTRVLAQSACTMRLSGIEDTAELLEKQLASEISKMTLEEALILARAF   92 (743)
Q Consensus        13 ~~~~L~~dv~lLg~lLg~vl~~~~G~~~~e~vE~iR~la~~~~~~r~~~~~~a~~~l~~~L~~~l~~L~~~~a~~laRAF   92 (743)
                      ..+.|+.||++||.+||++|+++.|+++|++||+||+++++.   |.. +..+    +..|.+.+.+|+.+++..|+|||
T Consensus         5 ~~~~lr~~v~~Lg~lLge~i~e~~g~~~~e~ve~ir~~s~~~---r~~-~~~~----~~~L~~~l~~Ls~~~~~~vaRaF   76 (910)
T COG2352           5 KYSALRSDVSMLGRLLGETIREAEGEAILELVETIRKLSKES---RAG-DQAD----RQELEATLANLSNDEAIPVARAF   76 (910)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh---hcc-chhh----HHHHHHHHcCCCHhhhhHHHHHH
Confidence            567899999999999999999999999999999999999765   432 2222    46788999999999999999999


Q ss_pred             HHHHhHHHHHHhHHHHHHhhhcc---CCCccHHHHHHHHHhCCCCHHHHHHHHhccceeEeeecCCCCccchhHHHHHHH
Q 004606           93 SHYLNLMGIAETHHRVRKSRNVA---HLSKSCDDIFSKLVQGGISPDELYDTVCKQEVEIVLTAHPTQINRRTLQYKHLR  169 (743)
Q Consensus        93 s~yf~L~NiAEe~hr~R~~r~~~---~~~~sl~~~~~~L~~~Gis~~~i~~~L~~~~v~pVlTAHPTEa~RrTvl~~~~r  169 (743)
                      |+|++|+||||+.|+.|+++...   ...+||..+|++|++.|+|++++.++|.++.|+|||||||||++||||++|+++
T Consensus        77 s~f~~L~NiaEd~~~~~r~~~~~~~~~~~~sL~~~~~~Lk~~~~~~~~v~~~l~~l~v~lVLTAHPTEv~RrTv~~~~~~  156 (910)
T COG2352          77 SQFLLLANIAEDYHRIRRRQIHEAAGDSDGSLAATLKKLKEQGLSPETVARALENLNVELVLTAHPTEVQRRTVIDKQRE  156 (910)
T ss_pred             HHHhhhhhHHHHhhhHhhhhhhhccCCCcchHHHHHHHHHhcCCCHHHHHHHHHhCceeEEEecCchHHHHHHHHHHHHH
Confidence            99999999999999999775332   235999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhccCcccCCCCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC
Q 004606          170 LSHLLDYNDRPDLGHEDREMQIEDMMREITSVWQTDELRRHKPTPVDEARAGLNIVEQSLWKAVPHYLRRVSNALKKHTG  249 (743)
Q Consensus       170 I~~lL~~~d~~~l~~~e~~~~~~~L~~~I~~LWqTdelR~~KPTv~DE~~~gL~y~e~sl~~avP~l~~~l~~al~~~~g  249 (743)
                      |..+|.++++.+++.. ++.++++|+++|..+||||+||..||||.|||+||++||++|||++||++++++..++++++|
T Consensus       157 I~~lL~~~~~~~~~~~-~~~~~~~L~~~I~~~W~TdeiR~~rptv~DEi~~gl~y~~~sl~~avP~l~r~~~~~~~~~~~  235 (910)
T COG2352         157 INRLLRKLDHADLSDE-RARIRRRLRRLIAQLWQTDEIRKLRPTVLDEIKNGLAYYENSLWQAVPKLLRELNEALQETFG  235 (910)
T ss_pred             HHHHHHHhhcccchhH-HHHHHHHHHHHHHHHhhhhHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            9999999998888776 899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcccccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc----cccHHHHHHHHHHHhh
Q 004606          250 KPLPLTCAPIRFGSWMGGDRDGNPNVTAKVTRDVSLLSRWMAIDLYIREVDSLRFELSMN----RCSDRMSRLAHDILER  325 (743)
Q Consensus       250 ~~~p~~~~~irfGSWiGGDRDGNP~VTaevT~~~~~~~R~~al~~Y~~~l~~L~~~LS~s----~~s~~l~~~~~~~~~~  325 (743)
                      ...|+.++|++|||||||||||||||||+||+++++++||+|+++|+++|.+|..+||+|    .|++++.+++..    
T Consensus       236 ~~~~~~~~p~~~gSWiGGDRDGNPfVTae~tr~~~~~~r~~~~~~Yl~~i~~L~~eLS~S~~~~~vs~el~ala~~----  311 (910)
T COG2352         236 ELLPVEAVPLRFGSWIGGDRDGNPFVTAETTRQALLLQRWKALDLYLKEIQKLYSELSMSTRLVKVSPELLALAGE----  311 (910)
T ss_pred             cccCCCCCccccccCccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhcccCCHHHHHHHhc----
Confidence            777878899999999999999999999999999999999999999999999999999995    566666654430    


Q ss_pred             hccCCCccchhhhhhhhhhhcccCCCCCCCCCCCCccCCCCCCcccCCCCCCCCCcCCCCcCCCCCCCCCCCCCCCCCCc
Q 004606          326 ETSSGDRHESWNQALSRNQLKHHGQQAPSLPTQLPARADLPSCTECNDGGSHYPKLELPVTDYIPLSGQDSTGPESPCQN  405 (743)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  405 (743)
                                                                .                                 +   
T Consensus       312 ------------------------------------------~---------------------------------~---  313 (910)
T COG2352         312 ------------------------------------------S---------------------------------Q---  313 (910)
T ss_pred             ------------------------------------------C---------------------------------c---
Confidence                                                      0                                 0   


Q ss_pred             cCCCCCCCCCCCCCCCCcccccccccCCCCCCchhHHHhhhhhhhhccccccccccCCCCCCCCCCCchHHhHHHHHHHH
Q 004606          406 ACNNTSKPAANGDGASSNSYQAGISCNSSFASKPLLAQRKIFAESQIGRSSFQKLLEPSLPQRSGIAPYRIVLGNVKEKL  485 (743)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~EPYR~~L~~i~~RL  485 (743)
                                                                                ....++.+||||++|.+|+.||
T Consensus       314 ----------------------------------------------------------d~~~~r~~EPYR~al~~i~~rL  335 (910)
T COG2352         314 ----------------------------------------------------------DQSIRRADEPYRRALKYIRSRL  335 (910)
T ss_pred             ----------------------------------------------------------cccchhccccHHHHHHHHHHHH
Confidence                                                                      0112456799999999999999


Q ss_pred             HHHHHHHHhhhhcCCCCCCCCCCCCCHHHhHHHHHHHHHHHhhcCCcccccchHHHHHHHHHHcCccccccccccchhHH
Q 004606          486 MKTRRRLELLLEDLPCDFDPWDYYETLDQLLEPLLLCYESLQSCGSGVLADGRLGDLIRRVVTFGMVLMKLDLRQESGRH  565 (743)
Q Consensus       486 ~~T~~~~~~~~~~~~~~~~~~~~Y~s~~ell~dL~~i~~SL~~~g~~~lA~g~L~~Lir~v~~FGfhLa~LDIRQ~S~~H  565 (743)
                      ++|.+++.+.+.+.. ...+.++|.+++||++||..|++||.+||++.+|+|+|.+++++|++|||||++|||||||++|
T Consensus       336 ~~T~~~l~~~~~~~~-~~~~~~~y~~~~el~~dL~~i~~SL~~~G~~~la~g~L~~ll~~v~~FGf~L~~LDiRQ~S~~h  414 (910)
T COG2352         336 MATQAYLDGLLAGEE-GVGPEPPYTSPEELLEDLYAIYQSLHACGMEILADGRLLDLLRRVEVFGFHLVSLDIRQESTRH  414 (910)
T ss_pred             HHHHHHHhccccccc-cCCCCcccCCHHHHHHHHHHHHHHHHhcCCceeccchHHHHHHHHHhcCceeeccccccccchH
Confidence            999998876655443 2344668999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCC-CCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCChhHHHHHHHHHHHHH----hccccccceeecCC
Q 004606          566 AEALDAITRYLDMG-TYSEWDEDKKLEFLTRELKGKRPLVPPTIEVPSDVKEVLDTFRVAAE----LGSDSLGAYVISMA  640 (743)
Q Consensus       566 ~~al~el~~~lg~~-~Y~~ldE~~r~~~L~~eL~~~RpL~~~~~~~s~e~~evL~tfr~iae----~g~~aig~YIISmt  640 (743)
                      ++||+||++++|++ +|.+|+|++|++||.+||.++|||+|+..++|++++++|+||+++++    +|+++|++||||||
T Consensus       415 ~~avaEL~~~ag~~~dY~~lsE~~K~~~L~~EL~s~RPL~p~~~~~Se~t~~~L~t~r~a~~~~~~~G~~~i~~yIISma  494 (910)
T COG2352         415 EEAVAELLRYAGLGADYSSLSEEDKQAFLLRELSSRRPLLPPFWQPSEETREELATFRVAAEAKDEFGEDAIGAYIISMA  494 (910)
T ss_pred             HHHHHHHHHHccCCCChhhcCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcc
Confidence            99999999999998 99999999999999999999999999999999999999999999996    69999999999999


Q ss_pred             CChhhHHHHHHHHHHhCccccCCCCCCCCCCCcccccccCChHHHhhHHHHHHHHhchHHHHHHHHhhCCCeeEEEEecc
Q 004606          641 SNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVCVLCR  720 (743)
Q Consensus       641 ~~aSDVL~V~lL~keaGL~~~~~~g~~~~~~~l~VVPLFETI~DL~~a~~im~~Lls~p~Yr~~l~~~~g~~QEVMLGYS  720 (743)
                      +++||||||++|+||+||.+.       +..+++|||||||||||+||+.||++||++||||+.|.. ++|.||||||||
T Consensus       495 ~s~SDvLev~lLlKE~Gl~~~-------~~~~v~VvPLFETieDL~na~~vm~~ll~l~~yR~~l~~-~~n~QEVMlGYS  566 (910)
T COG2352         495 ESVSDVLEVLLLLKEAGLVDP-------ERARVPVVPLFETIEDLDNAPDVMTQLLNLPLYRALLAG-RGNVQEVMLGYS  566 (910)
T ss_pred             CCHHHHHHHHHHHHHhCCCCc-------cCCccccccccccHHHHhccHHHHHHHHcChHHHHHHcC-CCCceEEEeccc
Confidence            999999999999999999743       347899999999999999999999999999999999965 789999999999


Q ss_pred             ccc------chHHHHHhcc
Q 004606          721 EFL------DSVICRFHGY  733 (743)
Q Consensus       721 Ds~------~~~~~~~~~~  733 (743)
                      ||-      +|+|++|++-
T Consensus       567 DSnKDgG~laa~Wa~y~Aq  585 (910)
T COG2352         567 DSNKDGGYLAANWALYKAQ  585 (910)
T ss_pred             ccccccchhhhHHHHHHHH
Confidence            973      8999998863

>PTZ00398 phosphoenolpyruvate carboxylase; Provisional Back     alignment and domain information
>PRK00009 phosphoenolpyruvate carboxylase; Reviewed Back     alignment and domain information
>PF00311 PEPcase: Phosphoenolpyruvate carboxylase; InterPro: IPR021135 Phosphoenolpyruvate carboxylase (PEPCase), an enzyme found in all multicellular plants, catalyses the formation of oxaloacetate from phosphoenolpyruvate (PEP) and a hydrocarbonate ion [] Back     alignment and domain information
>PRK13655 phosphoenolpyruvate carboxylase; Provisional Back     alignment and domain information
>TIGR02751 PEPCase_arch phosphoenolpyruvate carboxylase, archaeal type Back     alignment and domain information
>PF14010 PEPcase_2: Phosphoenolpyruvate carboxylase; PDB: 3ODM_C Back     alignment and domain information
>COG1892 Phosphoenolpyruvate carboxylase [Carbohydrate transport and metabolism; Energy production and conversion] Back     alignment and domain information
>PF03328 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family; InterPro: IPR005000 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (4 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query743
1qb4_A 883 Crystal Structure Of Mn(2+)-Bound Phosphoenolpyruva 1e-53
1qb4_A 883 Crystal Structure Of Mn(2+)-Bound Phosphoenolpyruva 1e-40
1jqo_A 970 Crystal Structure Of C4-Form Phosphoenolpyruvate Ca 2e-49
1jqo_A 970 Crystal Structure Of C4-Form Phosphoenolpyruvate Ca 2e-43
3zgb_A 972 Greater Efficiency Of Photosynthetic Carbon Fixatio 3e-49
3zgb_A 972 Greater Efficiency Of Photosynthetic Carbon Fixatio 2e-46
3zge_A 990 Greater Efficiency Of Photosynthetic Carbon Fixatio 5e-48
3zge_A 990 Greater Efficiency Of Photosynthetic Carbon Fixatio 1e-47
>pdb|1QB4|A Chain A, Crystal Structure Of Mn(2+)-Bound Phosphoenolpyruvate Carboxylase Length = 883 Back     alignment and structure 
Iteration: 1

 Score =  207 bits (528), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 113/296 (38%), Positives = 172/296 (58%), Gaps = 9/296 (3%)
Query: 14  FQSFDDDCKLLGNLLNDVLQREVGSESMERVERTRVLAQSACTMRLSGIEDTAELLEKQL 73
           + +   +  +LG +L + ++  +G   +ERVE  R L++S+   R     +  ELL    
Sbjct: 5   YSALRSNVSMLGKVLGETIKDALGEHILERVETIRKLSKSS---RAGNDANRQELL---- 57
Query: 74  ASEISKMTLEEALILARAFSHYLNLMGIAETHHRVRKSRNVAHLSKSCDDIFSKLV-QGG 132
            + +  ++ +E L +ARAFS +LNL   AE +H +      A   +       KL  Q  
Sbjct: 58  -TTLQNLSNDELLPVARAFSQFLNLANTAEQYHSISPKGEAASNPEVIARTLRKLKNQPE 116
Query: 133 ISPDELYDTVCKQEVEIVLTAHPTQINRRTLQYKHLRLSHLLDYNDRPDLGHEDREMQIE 192
           +S D +   V    +E+VLTAHPT+I RRTL +K + ++  L   D  D+   +    + 
Sbjct: 117 LSEDTIKKAVESLSLELVLTAHPTEITRRTLIHKMVEVNACLKQLDNKDIADYEHNQLMR 176
Query: 193 DMMREITSVWQTDELRRHKPTPVDEARAGLNIVEQSLWKAVPHYLRRVSNALKKHTGKPL 252
            + + I   W TDE+R+ +P+PVDEA+ G  +VE SLW+ VP+YLR ++  L+++ G  L
Sbjct: 177 RLRQLIAQSWHTDEIRKLRPSPVDEAKWGFAVVENSLWQGVPNYLRELNEQLEENLGYKL 236
Query: 253 PLTCAPIRFGSWMGGDRDGNPNVTAKVTRDVSLLSRWMAIDLYIREVDSLRFELSM 308
           P+   P+RF SWMGGDRDGNPNVTA +TR V LLSRW A DL+++++  L  ELSM
Sbjct: 237 PVEFVPVRFTSWMGGDRDGNPNVTADITRHVLLLSRWKATDLFLKDIQVLVSELSM 292
>pdb|1QB4|A Chain A, Crystal Structure Of Mn(2+)-Bound Phosphoenolpyruvate Carboxylase Length = 883 Back     alignment and structure
>pdb|1JQO|A Chain A, Crystal Structure Of C4-Form Phosphoenolpyruvate Carboxylase From Maize Length = 970 Back     alignment and structure
>pdb|1JQO|A Chain A, Crystal Structure Of C4-Form Phosphoenolpyruvate Carboxylase From Maize Length = 970 Back     alignment and structure
>pdb|3ZGB|A Chain A, Greater Efficiency Of Photosynthetic Carbon Fixation Due To Single Amino Acid Substitution Length = 972 Back     alignment and structure
>pdb|3ZGB|A Chain A, Greater Efficiency Of Photosynthetic Carbon Fixation Due To Single Amino Acid Substitution Length = 972 Back     alignment and structure
>pdb|3ZGE|A Chain A, Greater Efficiency Of Photosynthetic Carbon Fixation Due To Single Amino Acid Substitution Length = 990 Back     alignment and structure
>pdb|3ZGE|A Chain A, Greater Efficiency Of Photosynthetic Carbon Fixation Due To Single Amino Acid Substitution Length = 990 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query743
1jqn_A 883 Pepcase, PEPC, phosphoenolpyruvate carboxylase; be 1e-115
1jqn_A 883 Pepcase, PEPC, phosphoenolpyruvate carboxylase; be 2e-74
1jqo_A 970 Phosphoenolpyruvate carboxylase; beta barrel, carb 1e-110
1jqo_A 970 Phosphoenolpyruvate carboxylase; beta barrel, carb 3e-72
3odm_A 560 Pepcase, PEPC, phosphoenolpyruvate carboxylase; be 1e-15
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-15
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-05
>1jqn_A Pepcase, PEPC, phosphoenolpyruvate carboxylase; beta barrel, Mn2+ and DCDP complex, lyase; HET: DCO; 2.35A {Escherichia coli} SCOP: c.1.12.3 PDB: 1fiy_A* 1qb4_A Length = 883 Back     alignment and structure
 Score =  367 bits (945), Expect = e-115
 Identities = 115/315 (36%), Positives = 176/315 (55%), Gaps = 9/315 (2%)

Query: 13  SFQSFDDDCKLLGNLLNDVLQREVGSESMERVERTRVLAQSACTMRLSGIEDTAELLEKQ 72
            + +   +  +LG +L + ++  +G   +ERVE  R L++S+   R     +  ELL   
Sbjct: 4   QYSALRSNVSMLGKVLGETIKDALGEHILERVETIRKLSKSS---RAGNDANRQELLT-- 58

Query: 73  LASEISKMTLEEALILARAFSHYLNLMGIAETHHRVRKSRNVAHLSKSCDDIFSKLV-QG 131
               +  ++ +E L +ARAFS +LNL   AE +H +      A   +       KL  Q 
Sbjct: 59  ---TLQNLSNDELLPVARAFSQFLNLANTAEQYHSISPKGEAASNPEVIARTLRKLKNQP 115

Query: 132 GISPDELYDTVCKQEVEIVLTAHPTQINRRTLQYKHLRLSHLLDYNDRPDLGHEDREMQI 191
            +S D +   V    +E+VLTAHPT+I RRTL +K + ++  L   D  D+   +    +
Sbjct: 116 ELSEDTIKKAVESLSLELVLTAHPTEITRRTLIHKMVEVNACLKQLDNKDIADYEHNQLM 175

Query: 192 EDMMREITSVWQTDELRRHKPTPVDEARAGLNIVEQSLWKAVPHYLRRVSNALKKHTGKP 251
             + + I   W TDE+R+ +P+PVDEA+ G  +VE SLW+ VP+YLR ++  L+++ G  
Sbjct: 176 RRLRQLIAQSWHTDEIRKLRPSPVDEAKWGFAVVENSLWQGVPNYLRELNEQLEENLGYK 235

Query: 252 LPLTCAPIRFGSWMGGDRDGNPNVTAKVTRDVSLLSRWMAIDLYIREVDSLRFELSMNRC 311
           LP+   P+RF SWMGGDRDGNPNVTA +TR V LLSRW A DL+++++  L  ELSM   
Sbjct: 236 LPVEFVPVRFTSWMGGDRDGNPNVTADITRHVLLLSRWKATDLFLKDIQVLVSELSMVEA 295

Query: 312 SDRMSRLAHDILERE 326
           +  +  L  +    E
Sbjct: 296 TPELLALVGEEGAAE 310
>1jqn_A Pepcase, PEPC, phosphoenolpyruvate carboxylase; beta barrel, Mn2+ and DCDP complex, lyase; HET: DCO; 2.35A {Escherichia coli} SCOP: c.1.12.3 PDB: 1fiy_A* 1qb4_A Length = 883 Back     alignment and structure
>1jqo_A Phosphoenolpyruvate carboxylase; beta barrel, carbon dioxide fixation, lyase; 3.00A {Zea mays} SCOP: c.1.12.3 Length = 970 Back     alignment and structure
>1jqo_A Phosphoenolpyruvate carboxylase; beta barrel, carbon dioxide fixation, lyase; 3.00A {Zea mays} SCOP: c.1.12.3 Length = 970 Back     alignment and structure
>3odm_A Pepcase, PEPC, phosphoenolpyruvate carboxylase; beta-barrel, lyase; 2.95A {Clostridium perfringens} Length = 560 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 743
d1jqna_ 880 c.1.12.3 (A:) Phosphoenolpyruvate carboxylase {Esc 9e-90
d1jqna_ 880 c.1.12.3 (A:) Phosphoenolpyruvate carboxylase {Esc 2e-43
d1jqoa_ 936 c.1.12.3 (A:) Phosphoenolpyruvate carboxylase {Esc 2e-86
d1jqoa_ 936 c.1.12.3 (A:) Phosphoenolpyruvate carboxylase {Esc 4e-49
>d1jqna_ c.1.12.3 (A:) Phosphoenolpyruvate carboxylase {Escherichia coli [TaxId: 562]} Length = 880 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: Phosphoenolpyruvate carboxylase
domain: Phosphoenolpyruvate carboxylase
species: Escherichia coli [TaxId: 562]

 Score =  298 bits (764), Expect = 9e-90
 Identities = 113/314 (35%), Positives = 177/314 (56%), Gaps = 9/314 (2%)

Query: 14  FQSFDDDCKLLGNLLNDVLQREVGSESMERVERTRVLAQSACTMRLSGIEDTAELLEKQL 73
           + +   +  +LG +L + ++  +G   +ERVE  R L++S+   R     +      ++L
Sbjct: 2   YSALRSNVSMLGKVLGETIKDALGEHILERVETIRKLSKSS---RAGNDAN-----RQEL 53

Query: 74  ASEISKMTLEEALILARAFSHYLNLMGIAETHHRVRKSRNVAHLSKSCDDIFSKLV-QGG 132
            + +  ++ +E L +ARAFS +LNL   AE +H +      A   +       KL  Q  
Sbjct: 54  LTTLQNLSNDELLPVARAFSQFLNLANTAEQYHSISPKGEAASNPEVIARTLRKLKNQPE 113

Query: 133 ISPDELYDTVCKQEVEIVLTAHPTQINRRTLQYKHLRLSHLLDYNDRPDLGHEDREMQIE 192
           +S D +   V    +E+VLTAHPT+I RRTL +K + ++  L   D  D+   +    + 
Sbjct: 114 LSEDTIKKAVESLSLELVLTAHPTEITRRTLIHKMVEVNACLKQLDNKDIADYEHNQLMR 173

Query: 193 DMMREITSVWQTDELRRHKPTPVDEARAGLNIVEQSLWKAVPHYLRRVSNALKKHTGKPL 252
            + + I   W TDE+R+ +P+PVDEA+ G  +VE SLW+ VP+YLR ++  L+++ G  L
Sbjct: 174 RLRQLIAQSWHTDEIRKLRPSPVDEAKWGFAVVENSLWQGVPNYLRELNEQLEENLGYKL 233

Query: 253 PLTCAPIRFGSWMGGDRDGNPNVTAKVTRDVSLLSRWMAIDLYIREVDSLRFELSMNRCS 312
           P+   P+RF SWMGGDRDGNPNVTA +TR V LLSRW A DL+++++  L  ELSM   +
Sbjct: 234 PVEFVPVRFTSWMGGDRDGNPNVTADITRHVLLLSRWKATDLFLKDIQVLVSELSMVEAT 293

Query: 313 DRMSRLAHDILERE 326
             +  L  +    E
Sbjct: 294 PELLALVGEEGAAE 307
>d1jqna_ c.1.12.3 (A:) Phosphoenolpyruvate carboxylase {Escherichia coli [TaxId: 562]} Length = 880 Back     information, alignment and structure
>d1jqoa_ c.1.12.3 (A:) Phosphoenolpyruvate carboxylase {Escherichia coli [TaxId: 562]} Length = 936 Back     information, alignment and structure
>d1jqoa_ c.1.12.3 (A:) Phosphoenolpyruvate carboxylase {Escherichia coli [TaxId: 562]} Length = 936 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query743
d1jqoa_ 936 Phosphoenolpyruvate carboxylase {Escherichia coli 100.0
d1jqna_ 880 Phosphoenolpyruvate carboxylase {Escherichia coli 100.0
>d1jqoa_ c.1.12.3 (A:) Phosphoenolpyruvate carboxylase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: Phosphoenolpyruvate carboxylase
domain: Phosphoenolpyruvate carboxylase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=0  Score=1182.20  Aligned_cols=567  Identities=39%  Similarity=0.667  Sum_probs=516.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf             99999999999999996410916999999999998974342104860048999999999970799999999999999999
Q 004606           17 FDDDCKLLGNLLNDVLQREVGSESMERVERTRVLAQSACTMRLSGIEDTAELLEKQLASEISKMTLEEALILARAFSHYL   96 (743)
Q Consensus        17 L~~dv~lLg~lLg~vl~~~~G~~~~e~ve~iR~l~~~~~~~r~~~~~~~~~~~~~~L~~~l~~L~~~~a~~laRAFs~yf   96 (743)
                      ++.|+++||.+| +||++++|+++|++||+||.+++..   |..++.++    .++|.+.|.+|+++++..++||||+||
T Consensus         1 ~~~D~~llg~ll-~vi~e~~G~~~~~~vE~iR~ls~~~---r~~~~~~~----~~~L~~~l~~L~~~~~~~v~RAFs~~f   72 (936)
T d1jqoa_           1 IEYDALLVDRFL-NILQDLHGPSLREFVQECYEVSADY---EGKGDTTK----LGELGAKLTGLAPADAILVASSILHML   72 (936)
T ss_dssp             CHHHHHHHHHHH-HHHHHHHCHHHHHHHHHHHHHHHHH---HHHCCTHH----HHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHH-HHHHHHCCHHHHHHHHHHHHHHHHH---HHCCCHHH----HHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf             924888898899-9999850789999999999999998---72488788----999999997799899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHCC------------CCCCCHHHHHHHHH-HCCCCHHHHHHHHHCCCEEEEEECCCCCCCCHHH
Q ss_conf             6897998699999843103------------89761999999999-6899978899997126404744069977530259
Q 004606           97 NLMGIAETHHRVRKSRNVA------------HLSKSCDDIFSKLV-QGGISPDELYDTVCKQEVEIVLTAHPTQINRRTL  163 (743)
Q Consensus        97 ~L~NiAEe~~r~R~~r~~~------------~~~~Sl~~~~~~L~-~~G~s~~~i~~~L~~~~v~pVlTAHPTE~~RrTv  163 (743)
                      +|+||||++|++|++|...            ..++|++.+|.+|+ +.|+++++|++.|+++.|+|||||||||++||||
T Consensus        73 ~L~NiAE~~~~~rr~R~~~~~~~~~~~~g~~~~~~sl~~al~~L~~~~g~~~e~i~~~L~~~~i~pVlTAHPTEa~RrTv  152 (936)
T d1jqoa_          73 NLANLAEEVQIAHRRRNSKLKKGGFADEGSATTESDIEETLKRLVSEVGKSPEEVFEALKNQTVDLVFTAHPTQSARRSL  152 (936)
T ss_dssp             HHHHHHHHHHHHHHHHCC-----------------CHHHHHHHHHTTSCCCHHHHHHHHHTCEEEEEEECCTTCCSCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHCCCEEEEECCCCCCCCHHHH
T ss_conf             99999998899999999875214555556667656499999999986598999999998359566775569988726889


Q ss_pred             HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999987312999999588999999999999997066832478999599899999999987886789999999999
Q 004606          164 QYKHLRLSHLLDYNDRPDLGHEDREMQIEDMMREITSVWQTDELRRHKPTPVDEARAGLNIVEQSLWKAVPHYLRRVSNA  243 (743)
Q Consensus       164 l~k~~rI~~lL~~ld~~~l~~~e~~~~~~~L~~~I~~LWqTdelR~~KPTv~DEv~~gL~y~e~sl~~aiP~l~r~l~~a  243 (743)
                      ++||++|+.+|.++++.++++.|+..++++|+++|+.||||+|+|..||||.||++|||+||+++||++||.+|++++++
T Consensus       153 L~~~r~I~~lL~~ld~~~lt~~e~~~~~~~L~~~I~~LW~T~eiR~~KPtv~DE~~~~l~y~~~sl~~avP~l~~~l~~a  232 (936)
T d1jqoa_         153 LQKNARIRNCLTQLNAKDITDDDKQELDEALQREIQAAFRTDEIRRAQPTPQAEMRYGMSYIHETVWKGVPKFLRRVDTA  232 (936)
T ss_dssp             HHHHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHHHHHHHSCCSCCSCCCHHHHHHHHHHHHTTTTTTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999986536698588999999999999998575310247998699999999998850587789999999999


Q ss_pred             HHHHCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf             987119-9999988983014555568989987787989999999999999999999999996512331317888779999
Q 004606          244 LKKHTG-KPLPLTCAPIRFGSWMGGDRDGNPNVTAKVTRDVSLLSRWMAIDLYIREVDSLRFELSMNRCSDRMSRLAHDI  322 (743)
Q Consensus       244 l~~~~g-~~~p~~~~~i~fGSWiGGDRDGNP~VTaeVT~~~~~~~R~~al~~Y~~~l~~L~~~LS~s~~s~~l~~~~~~~  322 (743)
                      +.++|+ ...|..++||+|||||||||||||||||+||++|+.++|+.++++|++++++|.++||+|.++..+.....++
T Consensus       233 l~~~~~~~~~~~~~~~irfGSWiGGDRDGNP~VTaevT~~~l~~~r~~al~~Y~~~l~~L~~~LS~s~~~~~~~~~~~~l  312 (936)
T d1jqoa_         233 LKNIGINERLPYNVSLIRFSSWMGGDRDGNPRVTPEVTRDVCLLARMMAANLYIDQIEELMFELSMWRCNDELRVRAEEL  312 (936)
T ss_dssp             HHTTTCCSCCCTTCCSEEEEECTTTBCTTCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
T ss_pred             HHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf             98647774566677720353134447989988798999999999999999999999999999708520201331578999


Q ss_pred             HHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             85211678752013555333210136988999898887667899876568999998876788767788889999999998
Q 004606          323 LERETSSGDRHESWNQALSRNQLKHHGQQAPSLPTQLPARADLPSCTECNDGGSHYPKLELPVTDYIPLSGQDSTGPESP  402 (743)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  402 (743)
                      .+...   +                                .+...                                  
T Consensus       313 ~~~~~---~--------------------------------~~~~~----------------------------------  323 (936)
T d1jqoa_         313 HSSSG---S--------------------------------KVTKY----------------------------------  323 (936)
T ss_dssp             HHHHC---C--------------------------------CCCTT----------------------------------
T ss_pred             HHHHH---H--------------------------------HHHHH----------------------------------
T ss_conf             98656---5--------------------------------66777----------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             77667889999988999887642235566877787125788666543101442000125899999989995578699999
Q 004606          403 CQNACNNTSKPAANGDGASSNSYQAGISCNSSFASKPLLAQRKIFAESQIGRSSFQKLLEPSLPQRSGIAPYRIVLGNVK  482 (743)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~r~~~EPYR~~l~~i~  482 (743)
                                                                                .......++++||||+++..|+
T Consensus       324 ----------------------------------------------------------~~~~~~~~~~~EPyR~~L~~i~  345 (936)
T d1jqoa_         324 ----------------------------------------------------------YIEFWKQIPPNEPYRVILGHVR  345 (936)
T ss_dssp             ----------------------------------------------------------CSSSCSCCCTTSHHHHHHHHHH
T ss_pred             ----------------------------------------------------------HHHHHHHCCCCHHHHHHHHHHH
T ss_conf             ----------------------------------------------------------6789875176328899999999


Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCH
Q ss_conf             99999999998654069999999887899788477999999999622995342114999999998707644443443100
Q 004606          483 EKLMKTRRRLELLLEDLPCDFDPWDYYETLDQLLEPLLLCYESLQSCGSGVLADGRLGDLIRRVVTFGMVLMKLDLRQES  562 (743)
Q Consensus       483 ~RL~~T~~~~~~~~~~~~~~~~~~~~Y~~~~ell~dL~~i~~SL~~~g~~~lA~g~L~dLir~V~~FGfhLa~LDIRQ~S  562 (743)
                      +||.+|+.+....+............|.+++||++||.+|++||.++|+..+|+|.|.+|||+|++||||||+|||||||
T Consensus       346 ~RL~~t~~~~~~~~~~~~~~~~~~~~Y~s~~ell~dL~~i~~SL~~~g~~~la~~~L~~Lir~V~~FGfhLa~LDIRQ~S  425 (936)
T d1jqoa_         346 DKLYNTRERARHLLASGVSEISAESSFTSIEEFLEPLELCYKSLCDCGDKAIADGSLLDLLRQVFTFGLSLVKLDIRQES  425 (936)
T ss_dssp             HHHHHHHHHHHHHHHSSCCSSCSTTSCCSHHHHHHHHHHHHHHHHHTSCCTTTTTHHHHHHHHHHHHTTSSSEEEEECCH
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
T ss_conf             99999999999875146677773234577799999999999999873863334534689999999716421135664214


Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEECCCCC
Q ss_conf             17999999999844999999999988999999986299999999999996599999999999984512226324148999
Q 004606          563 GRHAEALDAITRYLDMGTYSEWDEDKKLEFLTRELKGKRPLVPPTIEVPSDVKEVLDTFRVAAELGSDSLGAYVISMASN  642 (743)
Q Consensus       563 ~~H~~al~ei~~~~g~~~Y~~l~E~~k~~~L~~eL~~~Rpl~~~~~~~s~e~~evL~tf~~iae~g~~aig~YIISmt~~  642 (743)
                      ++|++|++||++++|.++|.+|+|++|+++|..||.++||+.++..+.++++++++++|++++++|+++||+||||||++
T Consensus       426 ~~H~~ai~el~~~~g~~~y~~~~e~~r~~~L~~eL~~~rpl~~~~~~~~~e~~~~l~~~~~i~~~g~~aig~YIISmt~s  505 (936)
T d1jqoa_         426 ERHTDVIDAITTHLGIGSYREWPEDKRQEWLLSELRGKRPLLPPDLPQTDEIADVIGAFHVLAELPPDSFGPYIISMATA  505 (936)
T ss_dssp             HHHHHHHHHHHHHHTSCCSTTSCHHHHHHHHHHHHHCCSCCCCTTCCCCHHHHHHHHHHHHHHHSCSTTEEEEEETTCCS
T ss_pred             HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHCCCCC
T ss_conf             89999999999865787733378688899999985578888886410034699999999999851700013203115786


Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCEEEEEEECCCC
Q ss_conf             45599999999980711248899999999860014667957883179999998410999999972089823999701566
Q 004606          643 ASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVCVLCREF  722 (743)
Q Consensus       643 aSDVL~V~lL~keagl~~~~~~g~~~~~~~l~VVPLFETi~DL~~A~~il~~Lls~p~Yr~~l~~~~~~~QEVMLGYSDs  722 (743)
                      +||||+|++|+|++|+.           ++|+||||||||+||+|||.||++||++||||+|+    +|+||||||||||
T Consensus       506 ~sDvL~V~lLak~~g~~-----------~~l~VvPLFETi~DL~~a~~il~~Ll~~p~yr~~l----~~~QeVMlGYSDS  570 (936)
T d1jqoa_         506 PSDVLAVELLQRECGVR-----------QPLPVVPLFERLADLQSAPASVERLFSVDWYMDRI----KGKQQVMVGYSDS  570 (936)
T ss_dssp             THHHHHHHHHHHHTCCS-----------SCCCEEEEECSHHHHHTHHHHHHHHHTCHHHHHHH----TSEEEEEEESTTH
T ss_pred             HHHHHHHHHHHHHCCCC-----------CCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHH----CCCEEEEECCCCC
T ss_conf             78899999999971998-----------88773630334999984299999998382888743----1042777535555


Q ss_pred             C------CHHHHHHHCC
Q ss_conf             1------0489987206
Q 004606          723 L------DSVICRFHGY  733 (743)
Q Consensus       723 ~------~~~~~~~~~~  733 (743)
                      .      +|+|.+|++-
T Consensus       571 ~KDgG~laa~W~ly~Aq  587 (936)
T d1jqoa_         571 GKDAGRLSAAWQLYRAQ  587 (936)
T ss_dssp             HHHSCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHH
T ss_conf             42257888888999999
>d1jqna_ c.1.12.3 (A:) Phosphoenolpyruvate carboxylase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure