Citrus Sinensis ID: 004609
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 742 | 2.2.26 [Sep-21-2011] | |||||||
| P73625 | 822 | MutS2 protein OS=Synechoc | N/A | no | 0.867 | 0.783 | 0.327 | 2e-86 | |
| Q67QE3 | 793 | MutS2 protein OS=Symbioba | yes | no | 0.876 | 0.819 | 0.309 | 3e-77 | |
| A5D0W6 | 785 | MutS2 protein OS=Pelotoma | yes | no | 0.854 | 0.807 | 0.319 | 4e-76 | |
| B8D298 | 791 | MutS2 protein OS=Halother | yes | no | 0.781 | 0.733 | 0.333 | 4e-76 | |
| A0PZP4 | 785 | MutS2 protein OS=Clostrid | yes | no | 0.859 | 0.812 | 0.318 | 7e-74 | |
| A3DE67 | 793 | MutS2 protein OS=Clostrid | yes | no | 0.866 | 0.810 | 0.307 | 2e-72 | |
| C0Z9F1 | 785 | MutS2 protein OS=Brevibac | yes | no | 0.884 | 0.835 | 0.301 | 5e-71 | |
| Q5WEK0 | 787 | MutS2 protein OS=Bacillus | yes | no | 0.877 | 0.827 | 0.298 | 1e-70 | |
| A9KR74 | 796 | MutS2 protein OS=Clostrid | yes | no | 0.836 | 0.780 | 0.329 | 2e-70 | |
| A6TNX0 | 789 | MutS2 protein OS=Alkaliph | yes | no | 0.778 | 0.732 | 0.305 | 2e-70 |
| >sp|P73625|MUTS2_SYNY3 MutS2 protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=mutSB PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 321 bits (822), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 242/740 (32%), Positives = 367/740 (49%), Gaps = 96/740 (12%)
Query: 18 EESQKLLNQTSAALAMMQSQP--LDLSTIEDIAGILNSAVSGQLLSPSEICAVRRTLRAV 75
EES++LL QT A ++ S I DI L G L++ E+ A+ TL V
Sbjct: 49 EESRELLAQTQAVESIENSPESNWHFKGIADITEPLARVERGGLVTGLELLAIAGTLAGV 108
Query: 76 NNVWKKLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEKIGFCI--DCKLLIILDRASE 133
+ + + E +L+ L L+ L ELE+ I C+ D K + +RAS
Sbjct: 109 RRLRRVIEERDDLE--------ILQTLVAEVRTLPELEQAIHHCLGEDGK---VAERASP 157
Query: 134 DLELIRAERKRNMENLDSLLKKVAAQIFQAGGIDKPLITKRRSRMCVGIKASHKYLLPDG 193
L IR + K E + L+K+ + Q+ + + +IT+R R + IKA +K +P G
Sbjct: 158 KLGEIRQKLKAVREQIQQKLQKIIQR--QSNALQEAVITQRGDRFVLPIKAGYKEQMP-G 214
Query: 194 IALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEETAILSLLTAEIAKSEREIKYLMD 253
I + S+SG T ++EP+ VE N + E EE IL L+ ++ + ++++L+
Sbjct: 215 IVHDSSASGNTLYVEPQAIVELGNKLRQARRQEQTEEERILRQLSDQVLEVLLDLEHLLA 274
Query: 254 RVLEIDLAFARAGFAQWMDGVCPILSSQSHVSFDSSINIEGIKHPLLLGSSLRSLSAASS 313
+DLA AR ++ W+ P + + I + ++HPLL + + A
Sbjct: 275 IATRLDLATARVRYSFWLGAHPPQWLTPGD---EKPITLRQLRHPLLHWQAEKEGGPAV- 330
Query: 314 NSNPLKSDVENSEMTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTLGL 373
VPI + ++ + RV+ ITGPNTGGKT ++KTLGL
Sbjct: 331 ---------------------------VPITLTIDSQIRVIAITGPNTGGKTVTLKTLGL 363
Query: 374 ASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSR-- 431
+LM+K GLY+PAK +PWF ILADIGD QSL+QNLSTFSGHI RI+ IL+ +
Sbjct: 364 VALMAKVGLYIPAKETVEMPWFAQILADIGDEQSLQQNLSTFSGHICRIIRILQALPSGV 423
Query: 432 ----------------ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD 475
SLVL+DE+G+GTDP+EG ALA ++L++L D+ L V TTHY +
Sbjct: 424 QDVLDPEIDSPNHPIFPSLVLLDEVGAGTDPTEGSALAIALLRHLADQPCLTVATTHYGE 483
Query: 476 LSCLKDKDTRFENAATEFSLETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLV 535
L LK +D RFENA+ EF ++L PTYR+LWG G SNAL IA+ +G I+++A+ +
Sbjct: 484 LKALKYQDARFENASVEFDDQSLSPTYRLLWGIPGRSNALAIAQRLGLPLAIVEQAKDKL 543
Query: 536 ERLRPERQQHRKSELYQSLMEERRKLESQARTAASLHAEIMDLYREIEDEAKDLDRRAAH 595
+ Q + L +RR+ E +A A L E Y+++ +A L R
Sbjct: 544 GGFSEDINQ-----VIAGLESQRREQEQKAANAQKLLQETEIFYQQVSQKAASLQARERE 598
Query: 596 LKAKETQQVQQELNFAKVQIDTVVQDFENQLRDA----SADEINSLIKESESAIAAIVEA 651
LK+ + Q+VQQ + AK +I V++ + A A EI I+ + A A
Sbjct: 599 LKSYQDQEVQQAIAAAKEEIAKVIRQLQRGKPSAQKAQQATEILGQIQAEQKAKVA---- 654
Query: 652 HRPDDDFSVSETNTSSFTPQFGEQVHVKSLGDKLATVVEVPGDDDTVLVQYGKMRVRVKK 711
+ P GE++ + S G + A V +V TV V G M++ V
Sbjct: 655 -----------PKPIGYQPTVGERIRIPSFG-QTAEVTQVNATAQTVNVTLGLMKMTVPM 702
Query: 712 NNIRPIPNSKRKNAANPAPR 731
+I + N K+ P P+
Sbjct: 703 ADIESL-NGKK---VEPPPK 718
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Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708) |
| >sp|Q67QE3|MUTS2_SYMTH MutS2 protein OS=Symbiobacterium thermophilum (strain T / IAM 14863) GN=mutS2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 290 bits (742), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 224/723 (30%), Positives = 345/723 (47%), Gaps = 73/723 (10%)
Query: 19 ESQKLLNQTSAALAMMQS-QPLDLSTIEDIAGILNSAVSGQLLSPSEICAVRRTLRAVNN 77
E Q +TS A + + + L + D+ + AV G +L P ++ V T +
Sbjct: 42 EVQHRQAETSEARRLYEGGHAIPLGGLHDLRAHVQRAVRGGVLDPGDLLDVADTAASSRR 101
Query: 78 VWKKLTEAAELDGDSLQRYSPLLELL-KNCNFLTELEEKIGFCIDCKLLIILDRASEDLE 136
+ + L E Q P+L L + LE +I +D + D + E
Sbjct: 102 LKRFLEE---------QEGLPILTALSRMLGTFHHLEAEIRQAVDEHGEVRDDASPALAE 152
Query: 137 LIRAER---KRNMENLDSLLKKVAAQIFQAGGIDKPLITKRRSRMCVGIKASHKYLLPDG 193
+ R+ R R E LD+ ++ AA+ Q P++T R R V +K ++ +P G
Sbjct: 153 IRRSMRILQNRMKERLDAFVRGSAAKYLQ-----DPIVTIREGRFVVPVKIEYRAQVP-G 206
Query: 194 IALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEETAILSLLTAEIAKSEREIKYLMD 253
I + S+SG+T F+EP VE NN L+ E E IL+ L++ +A + +
Sbjct: 207 IVHDQSASGSTLFIEPMAIVEMNNDLRELALKEHEEVERILARLSSLVAGEADALLDTLQ 266
Query: 254 RVLEIDLAFARAGFAQWMDGVCPILSSQSHVSFDSSINIEGIKHPLLLGSSLRSLSAASS 313
V +ID A A+ + +D P L + + I +HPLL G
Sbjct: 267 AVAQIDFASAKGKLSLDLDCTEPELVR------EPILEIHKGRHPLLKGRV--------- 311
Query: 314 NSNPLKSDVENSEMTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTLGL 373
VPID+ + +VITGPNTGGKT ++KT+GL
Sbjct: 312 ---------------------------VPIDVHIGITFDTLVITGPNTGGKTVALKTMGL 344
Query: 374 ASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRES 433
LM++AGL+LPA + R+ F + DIGD QS+EQ+LSTFSGH++ I+ IL+ + +
Sbjct: 345 FVLMAQAGLHLPAGHGTRVGVFQQVFVDIGDEQSIEQSLSTFSGHMTNIIRILDALEGPA 404
Query: 434 LVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEF 493
LVL+DE+G+GTDP+EG ALA SIL++L R V TTHY++L +R ENA+ EF
Sbjct: 405 LVLLDELGAGTDPTEGAALAMSILEHLHKRGAKTVATTHYSELKTYAYTRSRVENASVEF 464
Query: 494 SLETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVERLRPERQQHRKSELYQS 553
+ETLRPT+R+L G G SNA I++ +G I+ RA++ + ++Q R +L Q
Sbjct: 465 DVETLRPTFRLLIGVPGSSNAFEISRRLGLSPHIVDRARQFL-----TQEQERVEDLIQG 519
Query: 554 LMEERRKLESQARTAASLHAEIMDLYREIEDEAKDLDRRAAHLKAKETQQVQQELNFAKV 613
+ R +LE + A L AE + E E D R+AA K Q QQ L A+
Sbjct: 520 IHATRAELEKERAEAHRLRAEAQRMREEYERRYGDAQRKAAETVEKARAQAQQILATARR 579
Query: 614 QIDTVVQDFENQLRDASADEINSLIKESESAIAAIVEAHRPDDDFSVSETNTS---SFTP 670
+ + V+ + + LR+ E I+ + S +A +A P ++ + P
Sbjct: 580 EAEAVIAELKQALREQREAERMQAIQSARSRLARARQAVEPTEEEQRARRRGEVPRGLKP 639
Query: 671 QFGEQVHVKSLGDKLATVVEVPGDDDTVLVQYGKMRVRVKKNNIRPIPNSKRKNAANPAP 730
G++V V SL D V+ P D VLVQ G +++ V ++ + A
Sbjct: 640 --GDKVRVVSL-DTTGYVLSEPDADGNVLVQAGILKMTVSLTDLERASEEQPAAGAGGPA 696
Query: 731 RLR 733
R+R
Sbjct: 697 RMR 699
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Symbiobacterium thermophilum (taxid: 2734) |
| >sp|A5D0W6|MUTS2_PELTS MutS2 protein OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=mutS2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 286 bits (732), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 228/713 (31%), Positives = 357/713 (50%), Gaps = 79/713 (11%)
Query: 25 NQTSAALAMMQSQPL-DLSTIEDIAGILNSAVSGQLLSPSEICAVRRTLRAVNNVWKKLT 83
+TS +++ +P + +DI L A G +L P E+ AV TL A + K
Sbjct: 48 EETSEGRKLLRLEPFAEAGGWKDIRAQLRKAGQGAILDPEELLAVADTLTAGRTIRKFFQ 107
Query: 84 EAAELDGDSLQRYSPLLELLKNCNFLTELEEKIGFCIDCKLLIILDRASEDLELIR---- 139
D ++Y L E+ L ELE KI I + D AS +L IR
Sbjct: 108 -------DRQEQYPLLYEVSSALVSLPELERKIKNAI-LPGGEVADGASPELAQIRRRLA 159
Query: 140 AERKRNMENLDSLLKKVAAQIFQAGGIDKPLITKRRSRMCVGIKASHKYLLPDGIALNVS 199
A + + E+L+ +++ + Q + + +P++T R R V +K H+ +P GI + S
Sbjct: 160 AAQAQVKEHLEHIIRSPSYQKY----LQEPIVTIREGRYVVPVKIEHRSQVP-GIVHDQS 214
Query: 200 SSGATYFMEPKGAVEFNNMEVRLSNSEIAEETAILSLLTAEIAKSEREIKYLMDRVLEID 259
+SGAT F+EP VE NN RL +E E IL+ L+A +A+ I ++ + E+D
Sbjct: 215 ASGATLFIEPMAVVEKNNELRRLMAAEKREIQRILAELSAGVAQHAGPIGASLEALGELD 274
Query: 260 LAFARAGFAQWMDGVCPILSSQSHVSFDSSINIEGIKHPLLLGSSLRSLSAASSNSNPLK 319
ARA ++Q +D P+L ++ ++I +HPLL G
Sbjct: 275 FIMARARYSQKLDAWAPLLEG------EACMDIRRGRHPLLQGEV--------------- 313
Query: 320 SDVENSEMTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSK 379
VPIDI++ + +VITGPNTGGKT ++KT GL LM++
Sbjct: 314 ---------------------VPIDIRLGADFDTLVITGPNTGGKTVALKTAGLLVLMAQ 352
Query: 380 AGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDE 439
+GL++PA RL F + ADIGD QS+EQ+LSTFS H++ IV+I+ +SLVL+DE
Sbjct: 353 SGLHIPAGEGSRLGIFRQVFADIGDEQSIEQSLSTFSSHMNNIVEIIGKAGPDSLVLLDE 412
Query: 440 IGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFSLETLR 499
+G+GTDP+EG ALA SIL+ L V TTHY +L R ENA+ EF TLR
Sbjct: 413 LGAGTDPAEGAALAQSILEKLHSAGAKTVATTHYGELKDFALTRERVENASVEFDAITLR 472
Query: 500 PTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLV--ERLRPERQQHRKSELYQSLMEE 557
PTYR+L G G SNA IA +G ++++RA+ + E ++ E EL +SL +
Sbjct: 473 PTYRLLIGKPGRSNAFEIAARLGLPEEVVKRARSFLTAEHIQAE-------ELMRSLEKT 525
Query: 558 RRKLESQARTAASLHAEIMDLYREIEDEAKDLDRRAAHLKAKETQQVQQELNFAKVQIDT 617
+++ E++ R AA L +E L E DL + + +K ++ Q + A+++ +
Sbjct: 526 QQEAEAERRRAAELASEARALKERYEKIEADLASKRESILSKAAEEAQALVRAARLEAEA 585
Query: 618 VVQDFENQLRDASADEINSLIKESESAIAAIVE-AHRPDDDFSVSETNTSSFTPQFGEQV 676
V++ ++ + +A E + I+E+ + + + R + +V + P GE+V
Sbjct: 586 AVRELREKMAEEAARERENAIREAREKLRKLQQRVGRAVPEKTVPGEAPAGLRP--GEEV 643
Query: 677 HVKSLGDKLATVVEVPGDDDTVLVQYGKMRVRVKKNNIRPIPNSKRKNAANPA 729
+ K V+E PG VLVQ G +++ V P+ +R A PA
Sbjct: 644 FLTRYNQK-GYVLEPPGAGGEVLVQVGVIKMNV------PLRELRRVKEARPA 689
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Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) (taxid: 370438) |
| >sp|B8D298|MUTS2_HALOH MutS2 protein OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=mutS2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 286 bits (732), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 232/696 (33%), Positives = 336/696 (48%), Gaps = 116/696 (16%)
Query: 44 IEDIAGILNSAVSGQLLSPSEICAVRRTLRAVNNVWKKLTEAAELDGDSLQR-YSPLLEL 102
I D+ I+ A G +LS E+ VR TL V + K E D LQ YS + E
Sbjct: 68 IRDLREIIEKADKGIVLSVKEVMDVRSTLEGVRELKKYSREIGTGIDDELQDIYSIITEK 127
Query: 103 LKNCNFLTELEEKIGFCIDCKLLIILDRASEDLELIRAERKRNMENLDSLLKKVAAQIFQ 162
L +LE +I CID + I D AS L IR E R ++ L +
Sbjct: 128 FDRLTPLKQLENEINRCID-EHGEIKDSASRKLRSIRREMDRIEGKINDKLNSIINNTRY 186
Query: 163 AGGIDKPLITKRRSRMCVGIKASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRL 222
+ L+T R +R V +K+S+K GI + S+SG TYFMEP V+ NN L
Sbjct: 187 QEMLQDKLVTIRGNRYVVPVKSSYKNTFS-GIVHDQSTSGLTYFMEPMAIVKLNNRLGEL 245
Query: 223 SNSEIAEETAILSLLTAEIAKSEREIKYLMDRVLEIDLAFARAGFAQWMDGVCPILSSQS 282
+E E IL L+ I + R++ ++ V +D+ FARA F+ ++G+ P ++ +
Sbjct: 246 KRAEEQEIYRILKKLSENIKEHTRDLSDNLEMVSLLDVDFARARFSIEIEGIEPGINDKG 305
Query: 283 HVSFDSSINIEGIKHPLLLGSSLRSLSAASSNSNPLKSDVENSEMTVGSLSKGISDFPVP 342
INI G +HPLL +K PVP
Sbjct: 306 F------INIRGGRHPLL----------------KVK--------------------PVP 323
Query: 343 IDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADI 402
IDI V E + +VITGPNTGGKT ++KT+GL LM +AGL++PA+ + F+ + ADI
Sbjct: 324 IDITVGNEFKTLVITGPNTGGKTVALKTVGLFVLMVQAGLHIPAEEETVISIFNGVYADI 383
Query: 403 GDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD 462
GD QS+EQNLSTFS HI+RI L SLVL+DEIG GTDP EG AL +IL++LR+
Sbjct: 384 GDEQSIEQNLSTFSSHINRIKRFLGKADARSLVLLDEIGVGTDPREGAALGVAILEHLRE 443
Query: 463 RVGLAVVTTHYADLSCLKDKDTRFENAATEFSLETLRPTYRILWGSTGDSNALNIAKSIG 522
R + TTHY+++ ENA+ EF +ETL+PTYR+L G G SNA IA +G
Sbjct: 444 RGVTTIATTHYSEIKSYAYSQDGVENASVEFDMETLQPTYRLLMGIPGGSNAFEIALKLG 503
Query: 523 FDRKIIQ-----------RAQKLVERLRPERQQH---------------RKSELYQSLM- 555
II+ + + ++ L ER+++ +K + Y SL+
Sbjct: 504 LPHDIIKDGKELMSGDDIKVENIISDLNEERKKYEQLKIEIEERLEAVKKKEQKYDSLLT 563
Query: 556 ---EERRKLESQARTAASLHAEIMDLYREIEDEAKDLDRRAAHLKAKETQQVQQELNFA- 611
+ ++KL ++AR A + + ++ E+K++ RR LK KE FA
Sbjct: 564 DLEKRKKKLITEAREEA------LQIIKKTRKESKEILRR---LKNKE---------FAS 605
Query: 612 KVQIDTVVQDFENQLRDASADEINSLIKESESAIAAIVEAHRPDDDFSVSETNTSSFTPQ 671
+ ID V +EIN +KE+E I+ + D V E +
Sbjct: 606 RSDIDRV------------ENEINLNLKETEKEISE--KRQNKDGRTRVKEISC------ 645
Query: 672 FGEQVHVKSLGDKLATVVEVPGDDDTVLVQYGKMRV 707
G+QV +K G K V+ V + ++Q G M+V
Sbjct: 646 -GDQVRLKKTGQK-GEVISVDREKGEAVIQAGIMKV 679
|
Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) (taxid: 373903) |
| >sp|A0PZP4|MUTS2_CLONN MutS2 protein OS=Clostridium novyi (strain NT) GN=mutS2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 279 bits (713), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 231/725 (31%), Positives = 359/725 (49%), Gaps = 87/725 (12%)
Query: 12 PFGKSLEESQKLLNQTSAALAMMQSQPLDLSTIEDIAGILNSAVSGQLLSPSEICAVRRT 71
P+ + E + L+ A ++ S + DI ++ A L PSE+ V
Sbjct: 36 PYESAYEVREHLMETEEAFKISIKKGDAPFSGLYDIREAISKAQRRFTLFPSELLRVANL 95
Query: 72 LRAVNNVWKKLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEKIGFCIDCKLLIILDRA 131
LRA + +K ++ +L ++Y L + + L LEE+I CI + I DRA
Sbjct: 96 LRA-SRRFKGYVKSDDLS----EKYEVLESITEGLVPLNGLEEEISKCIIGEEEIS-DRA 149
Query: 132 SEDLELIRAERKRNMENLDSLLKKVAAQIFQ--AGGIDKPLITKRRSRMCVGIKASHKYL 189
S L IR R++++ S +K + + + + + + T R R + +K HK
Sbjct: 150 STTLFNIR----RSLKDKTSSIKARVNSLIRTYSSHLQENIYTVRGERYVLPVKVEHKGA 205
Query: 190 LPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEETAILSLLTAEIAKSEREIK 249
+P G+ + S+SGAT F+EP V+ NN L E AE IL+ L+ ++ ++ IK
Sbjct: 206 VP-GLVHDQSASGATLFIEPMSLVDLNNEIKELRLKEKAEIDRILAFLSGKVYENVDVIK 264
Query: 250 YLMDRVLEIDLAFARAGFAQWMDGVCPILSSQSHVSFDSSINIEGIKHPLLLGSSLRSLS 309
D + E+D FA+A +AQ + + PI+S H NI KHPL+
Sbjct: 265 VDADILWELDFIFAKAKYAQKLGAIMPIISEDGH------FNIINAKHPLI--------- 309
Query: 310 AASSNSNPLKSDVENSEMTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMK 369
+P K VEN+ L GI+ VVITGPNTGGKT ++K
Sbjct: 310 ------DP-KKVVENNIY----LRDGITS---------------VVITGPNTGGKTVTLK 343
Query: 370 TLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELV 429
T+GL +M+ +GL + A + +F + ADIGD QS+EQ+LSTFS H++ IV+I++
Sbjct: 344 TVGLLHIMAMSGLMITASQGSTISFFKEVFADIGDEQSIEQSLSTFSSHMTNIVNIIDSA 403
Query: 430 SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENA 489
SLVL DE+G+GTDP+EG ALA SIL+ LR R + TTHY++L K ENA
Sbjct: 404 DENSLVLFDELGAGTDPTEGAALAVSILENLRKRKTKVIATTHYSELKAYALKVDNVENA 463
Query: 490 ATEFSLETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLV--ERLRPERQQHRK 547
+ EF +ETLRPTYR+L G G SNA I+K +G II+ A++ + E L+ E
Sbjct: 464 SVEFDVETLRPTYRLLIGVPGKSNAFEISKRLGLPDYIIEDAREGISEETLKFE------ 517
Query: 548 SELYQSLMEERRKLESQARTAASLHAEIMDLYREIE---DEAKDLDRRAAHLKAKETQQV 604
+L QSL + K + AR A S E + L + E D+ +D+ +A KE +++
Sbjct: 518 -DLIQSLQHKNIKAQEHARKAESAKEEAVKLKEKYESKLDKFQDIREKAILNAQKEAKEI 576
Query: 605 QQELNFAKVQIDTVVQDFENQLRDASADEINSLIKESESAIAAIVEAHRPDDDFSVSETN 664
+E AK + D +++D R + ++ L++E+ + D +E+
Sbjct: 577 IKE---AKEEADKILKDIRELERMGYSSDVRKLLEENRKKLK---------DKLEKTESK 624
Query: 665 TSSFTPQFGEQVHVKSLGDKL--------ATVVEVPGDDDTVLVQYGKMRVRVKKNNIRP 716
+ + GE V S GD+L V+ P + V VQ G M+++V ++R
Sbjct: 625 LNQ-PKEVGEAVTNVSEGDELYLPKFETKVMVLTNPDNKGDVQVQAGIMKIKVNIKDLRK 683
Query: 717 IPNSK 721
+K
Sbjct: 684 TKETK 688
|
Clostridium novyi (strain NT) (taxid: 386415) |
| >sp|A3DE67|MUTS2_CLOTH MutS2 protein OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=mutS2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 274 bits (701), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 220/715 (30%), Positives = 349/715 (48%), Gaps = 72/715 (10%)
Query: 17 LEESQKLLNQTSAALAMMQSQPLDLSTIEDIAGILNSAVSGQLLSPSEICAVRRTLRAVN 76
+E +QK + A +A + P+ I DI L G +L+P E+ LRAV
Sbjct: 43 VERAQKETSDAVAFIARRGTPPM--GGIHDIRDSLKRVEIGAILNPGELLKTADVLRAVR 100
Query: 77 NVWKKLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEKIGFCIDCKLLIILDRASEDLE 136
N+ K + D S L+ L++ +E++I I + I D AS L
Sbjct: 101 NL-KSYASNDRIKTDEDNIVSELIGCLESNK---RIEDRIYMSILSEDEIA-DNASPTLA 155
Query: 137 LIRAERKRNMENLDSLLKKVAAQIFQAGGIDKPLITKRRSRMCVGIKASHKYLLPDGIAL 196
IR + + E++ L + I +P++T R R + +K ++ +P G+
Sbjct: 156 NIRRQIRNAQESIKDKLNDIIRSSRYQKYIQEPIVTLRGDRYVIPVKQEYRTEIP-GLIH 214
Query: 197 NVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEETAILSLLTAEIAKSEREIKYLMDRVL 256
+ S+SGAT F+EP VE NN L E AE IL LT EI +K + +
Sbjct: 215 DSSASGATIFIEPMAVVEANNHIRELKIKEQAEIEKILGELTGEIRGIVDSLKSNVSILG 274
Query: 257 EIDLAFARAGFAQWMDGVCPILSSQSHVSFDSSINIEGIKHPLLLGSSLRSLSAASSNSN 316
+D FA+A + + VCP+L+ + I I+ +HPLL
Sbjct: 275 RLDFIFAKARLSLDYNCVCPVLNDEH------KILIKKGRHPLL---------------- 312
Query: 317 PLKSDVENSEMTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTLGLASL 376
+ TV VPID + + +V+TGPNTGGKT ++KT+GL +L
Sbjct: 313 --------DKKTV-----------VPIDFWIGEDFNTLVVTGPNTGGKTVTLKTVGLFTL 353
Query: 377 MSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVL 436
M++AGL++PA ++ F + ADIGD QS+EQ+LSTFS H+ IV IL+ V +SLVL
Sbjct: 354 MTQAGLHIPANEGTKMSIFKKVYADIGDEQSIEQSLSTFSSHMKNIVGILKDVDEDSLVL 413
Query: 437 IDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFSLE 496
DE+G+GTDP+EG ALA SIL+YLR++ V TTHY+ L ENA EF++E
Sbjct: 414 FDELGAGTDPTEGAALAMSILEYLRNKGSTTVATTHYSQLKAYAVTTKFVENACCEFNVE 473
Query: 497 TLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVERLRPERQQHRKSELYQSLME 556
TLRPTYR+L G G SNA I+K +G II++A++ + + + ++ S+ +
Sbjct: 474 TLRPTYRLLIGVPGKSNAFAISKRLGLFDDIIEKAKEFL-----TQDDIKFEDMLMSIEK 528
Query: 557 ERRKLESQARTAASLHAEIMDLYREIEDEAKDLDRRAAHLKAKETQQVQQELNFAKVQID 616
+ E++ A S E L +E+E++ + L L + + ++ L A+ + +
Sbjct: 529 NLNQSENEKMKAESYRLEAEKLKKELEEQKRKLAENRERLIQEARAEARKILLEARKEAE 588
Query: 617 TVV-------QDFENQLRDASADEINSLIKESESAIAAIVEAHRPDDDFSVSETNTSSFT 669
++ Q+ N R A+E+ +K +I +E ++ N
Sbjct: 589 EIISKMRRLEQEVHNAQRQKEAEELRLKLKRKVDSIEETLE-------LPLAPKNALVKP 641
Query: 670 PQF---GEQVHVKSLGDKLATVVEVPGDDDTVLVQYGKMRVRVKKNNIRPIPNSK 721
P+ G+ V + +L D+ TV+ P D V+VQ G M++ V +N++ + K
Sbjct: 642 PENLKPGDSVLIVNL-DQKGTVITPPDKDGEVVVQAGIMKINVHISNLKLVDEQK 695
|
Clostridium thermocellum (strain ATCC 27405 / DSM 1237) (taxid: 203119) |
| >sp|C0Z9F1|MUTS2_BREBN MutS2 protein OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=mutS2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 270 bits (689), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 222/737 (30%), Positives = 365/737 (49%), Gaps = 81/737 (10%)
Query: 11 IPFGKSLEE---SQKLLNQTSAALAMMQSQPLDLSTIEDIAGILNSAVSGQLLSPSEICA 67
IPF + L+E +Q+ Q + L + S PL I DI G + A +L+P E+
Sbjct: 35 IPFLR-LDEVINAQQGTEQAATVLRLKGSVPL--GGIRDIRGPVQRARLNAMLAPMELLD 91
Query: 68 VRRTLRAVNNVWKKLTEAAELDGDSLQRYSPLLEL-LKNCNFLTELEEKIGFCIDCKLLI 126
+ T+ A + L + D L PLL+ + L ELE +I C+D
Sbjct: 92 IASTVMAGRRLKTFLLDMC--DDHEL----PLLQQQAERIEGLRELETEIRRCVDENG-D 144
Query: 127 ILDRASEDLELIRAERKRNMENLDSLLKKVAAQIFQAGGIDKPL----ITKRRSRMCVGI 182
ILD AS +L +R E + L+S +++ Q+ ++ K L +T R R + +
Sbjct: 145 ILDSASLELRQVRQE----IRQLESRIREKLDQMTRSSTYQKMLMENIVTIRGDRFVIPV 200
Query: 183 KASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEETAILSLLTAEIA 242
K ++ + GI + S+SGAT F+EP+ VE NN L E E IL +LT +++
Sbjct: 201 KQEYRSVF-GGIVHDQSASGATLFIEPEVIVEMNNKLRELRLREEREVERILYVLTEQVS 259
Query: 243 KSEREIKYLMDRVLEIDLAFARAGFAQWMDGVCPILSSQSHVSFDSSINIEGIKHPLLLG 302
+ + + + E+D FA+A A M +CP ++ + +V N+ +HPL+
Sbjct: 260 FAVEALVENTEALTELDFMFAKAQLAWSMKAICPRINDRGYV------NMRKARHPLI-- 311
Query: 303 SSLRSLSAASSNSNPLKSDVENSEMTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTG 362
P + VP+D+++ E + +V+TGPNTG
Sbjct: 312 --------------P-------------------REVVVPVDVELGGEYQAIVVTGPNTG 338
Query: 363 GKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRI 422
GKT S+KT+GL SLM+ AGL++PA+ + F I ADIGD QS+EQ+LSTFS H++ I
Sbjct: 339 GKTVSLKTIGLLSLMTMAGLHIPAEEESEMTVFSSIFADIGDEQSIEQSLSTFSSHMTNI 398
Query: 423 VDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDK 482
+ IL + +SLVL DE+G+GTDP+EG ALA SI+ ++ D V TTHY++L
Sbjct: 399 IQILAKMDDKSLVLFDELGAGTDPTEGAALAMSIIDHVIDSGARLVATTHYSELKAYAYD 458
Query: 483 DTRFENAATEFSLETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVERLRPER 542
NA+ EF ++TLRPTYR+L G G SNA IA+ +G II V R
Sbjct: 459 RPEVINASVEFDVQTLRPTYRLLIGVPGRSNAFAIARRLGLPEHIID-----VARGSISE 513
Query: 543 QQHRKSELYQSLMEERRKLESQARTAASLHAEIMDLYREIEDEAKDLDRRAAHLKAKETQ 602
+ ++ + SL R+ E+ A + E +L ++E+E A K K +
Sbjct: 514 EDNQVESMIASLERNRKSAEADRLAAKAARQEAEELRTQLEEERAQF----AEEKNKRME 569
Query: 603 QVQQE----LNFAKVQIDTVVQDFENQLRDASADEINSLIKESESAIAAIVEAHRPDDDF 658
+ + E + AK + +T++++ + + + + LI + A++E +
Sbjct: 570 RAEDEARIAVQLAKEEAETIIRELREMMAEGMEIKEHRLIDAKKRLGNAVLELEKEKVKK 629
Query: 659 SVSETNTSSFTPQFGEQVHVKSLGDKLATVVEVPGDDDTVLVQYGKMRVRVKKNNIRPIP 718
+ + G++V V S G K TV+E +++ LVQ G M+++VK++++
Sbjct: 630 PAKAVRATQI--KVGDEVMVTSFGQK-GTVLEKVNNEE-FLVQIGIMKMKVKRDDMHVQN 685
Query: 719 NSKRKNAANPAPRLRKQ 735
+ ++K A P ++++
Sbjct: 686 SIQQKPQAAPYTSVKRR 702
|
Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) (taxid: 358681) |
| >sp|Q5WEK0|MUTS2_BACSK MutS2 protein OS=Bacillus clausii (strain KSM-K16) GN=mutS2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 268 bits (685), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 213/713 (29%), Positives = 354/713 (49%), Gaps = 62/713 (8%)
Query: 16 SLEESQKLLNQTSAALAMMQSQP-LDLSTIEDIAGILNSAVSGQLLSPSEICAVRRTLRA 74
SLEE + L ++T+ A +++ + + L I D+ + A G +LS +E+ + TL
Sbjct: 38 SLEEVRHLQDETAEAANVLRLKGHVPLGGISDVRPHIKRAAIGGVLSATELIEIASTLYG 97
Query: 75 VNNVWKKLTEAAELDGDSLQRYSPLLE-LLKNCNFLTELEEKIGFCIDCKLLIILDRASE 133
V K+ E DG P+L ++ L+ +E+ I CID + LD AS
Sbjct: 98 GKRV-KQFIETIIEDG---HIEVPILAGHVEQIEPLSPIEKAIKQCIDDNGYV-LDSAST 152
Query: 134 DLELIRAERKRNMENLDSLLKKVAAQIFQAGGIDKPLITKRRSRMCVGIKASHKYLLPDG 193
L +R + + + S L ++ + ++T R R + +K ++ G
Sbjct: 153 SLRTVRHQIRSYESGIKSKLDQLTRSSNTRKMLSDAIVTIRSDRYVLPVKQEYRGTF-GG 211
Query: 194 IALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEETAILSLLTAEIAKSEREIKYLMD 253
I + SSSGAT F+EP V NN E E IL L+A++A+ ++ +D
Sbjct: 212 IVHDQSSSGATLFIEPAAIVTLNNQLTEAKAKEKREIERILRELSAKVAEESEQLLLNVD 271
Query: 254 RVLEIDLAFARAGFAQWMDGVCPILSSQSHVSFDSSINIEGIKHPLLLGSSLRSLSAASS 313
++ ++D A+A +A+ + V P L+ + ++ + +HPLL
Sbjct: 272 KLAQLDFICAKAYYAKAVKAVKPTLNDRGYLDLRQA------RHPLL------------- 312
Query: 314 NSNPLKSDVENSEMTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTLGL 373
P D VP D+ + + R +VITGPNTGGKT ++KT+GL
Sbjct: 313 ---P-------------------PDKVVPSDMAIGDQVRSLVITGPNTGGKTVTLKTIGL 350
Query: 374 ASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRES 433
+LM+++GL++PA L F+ I ADIGD QS+EQ+LSTFS H+ IV IL ++ S
Sbjct: 351 LTLMAQSGLFVPAAEETELAVFEHIFADIGDEQSIEQSLSTFSSHMKNIVSILNEMNENS 410
Query: 434 LVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEF 493
L+L DE+G+GTDP+EG ALA SIL ++ R LAV TTHY++L NA+ EF
Sbjct: 411 LILFDELGAGTDPTEGAALAISILDHVYKRGALAVATTHYSELKGYAYNREGALNASVEF 470
Query: 494 SLETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVERLRPERQQHRKSELYQS 553
+ETLRPTYR+L G G SNA I++ +G D +II +A +L+ + + ++ S
Sbjct: 471 DVETLRPTYRLLVGVPGRSNAFAISRRLGLDERIIDQA-----KLQIDSDASQVEKMIAS 525
Query: 554 LMEERRKLESQARTAASLHAEIMDLYREIEDEAKDLDRRAAHLKAKETQQVQQELNFAKV 613
L + ++ +S+ A ++ E L R++E + K Q+ ++ + A+
Sbjct: 526 LEDSQKSAQSEWSRAEAVRREAEALKRDLEKRMASFEEMKEAALQKAEQKAEKVVAAAQE 585
Query: 614 QIDTVVQDFENQLRDASADEINSLI---KESESAIAAIVEAHRPDDDFSVSETNTSSFTP 670
+ ++ + + + A + + LI K+ E A +V R + + P
Sbjct: 586 NAELIISELRDLQKQGVAVKEHQLIEARKQLEEAAPKLVSKKRKQVK---KQAEKAKRLP 642
Query: 671 QFGEQVHVKSLGDKLATVVEVPGDDDTVLVQYGKMRVRVKKNNIRPIPNSKRK 723
+ G++V V S K TVV+ GD++ VQ G M++ V ++I+ + +R+
Sbjct: 643 EPGDEVKVLSFNQK-GTVVKKIGDNE-YQVQLGIMKMAVPIDDIQLLEQERRQ 693
|
Bacillus clausii (strain KSM-K16) (taxid: 66692) |
| >sp|A9KR74|MUTS2_CLOPH MutS2 protein OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=mutS2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 267 bits (683), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 234/710 (32%), Positives = 342/710 (48%), Gaps = 89/710 (12%)
Query: 17 LEESQKLLNQTSAALAMMQSQ-PLDLSTIEDIAGIL------NSAVSGQLLSPSEICAVR 69
LE+ ++ +T+ AL + ++ L S I DI L S +G+LL S +
Sbjct: 40 LEDIVQMQQETTDALTRLYAKGTLSFSGIPDIRDTLMRLEIGASLGAGELLKISSVLTA- 98
Query: 70 RTLRAVNNVW--KKLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEKIGFCIDCKLLII 127
TLRA N + K E E D+L LLE L N +I CI + I
Sbjct: 99 -TLRAKNYGYNQKNNEETEEAAQDTLTERFHLLEPLSPIN------NEIRRCIISEEEIA 151
Query: 128 LDRASEDLELIRAERKRNMENLDSLLKKVAAQIFQAGGIDKPLITKRRSRMCVGIKASHK 187
D AS L+ +R + K + + L + G + +IT R R C+ IK +K
Sbjct: 152 -DDASPGLKSVRRQIKITNDKIHESLGSILNSASTKGMLQDAIITMRNGRYCLPIKQEYK 210
Query: 188 YLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEETAILSLLTAEIAKSERE 247
G+ + SS+G+T F+EP V+ NN L+ E E IL+ L+ +A +
Sbjct: 211 NTF-QGMMHDQSSTGSTAFIEPMAIVKLNNELAELAVREQEEIEKILAELSNLVATEKYN 269
Query: 248 IKYLMDRVLEIDLAFARAGFAQWMDGVCPILSSQSHVSFDSSINIEGIKHPLLLGSSLRS 307
+KY + E+D FARAG ++ M +SQ H + INI+ +HPL+
Sbjct: 270 LKYNQTTLAELDFIFARAGLSKNMK------ASQPHFNNRHYINIKKGRHPLI------- 316
Query: 308 LSAASSNSNPLKSDVENSEMTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTAS 367
+P K VPIDI + ++VITGPNTGGKT S
Sbjct: 317 --------DPKKV--------------------VPIDIYFGDKFDLLVITGPNTGGKTVS 348
Query: 368 MKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILE 427
+KT+GL +LM +AGL++PA + L F+ + ADIGD QS+EQ+LSTFS H++ V ILE
Sbjct: 349 LKTVGLFTLMGQAGLHIPAFDGSELSIFEEVYADIGDEQSIEQSLSTFSSHMTNTVSILE 408
Query: 428 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFE 487
+ SLVL DE+G+GTDP+EG ALA +IL YL R + TTHY++L
Sbjct: 409 HANENSLVLFDELGAGTDPTEGAALAMAILSYLHQRKIRTMATTHYSELKIFALSTDGVS 468
Query: 488 NAATEFSLETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVERLRPERQQHRK 547
NA EFS+ETL+PTYR+L G G SNA I+ +G II++A++ + +
Sbjct: 469 NACCEFSVETLQPTYRLLIGIPGKSNAFAISSKLGLSNYIIEKAREFI-----GTKDESF 523
Query: 548 SELYQSLMEERRKLESQARTAASLHAEIMDLYREIE------DEAKDLDRRAAHLKAKET 601
++ +L R +E A E+ +L R++ D+AKD R A+ KA+
Sbjct: 524 EDVISNLEASRIAMEKDKAEAEQYKKEVEELKRKLAEKNSKIDDAKDRILREANEKAR-- 581
Query: 602 QQVQQELNFAKVQIDTVVQDFENQLRDASADEINSLIKESESAIAAIVEAHRPDDDFSVS 661
+ QE AK D ++ + N+ A+ KE E+ AA+ E D VS
Sbjct: 582 -TILQE---AKDYADETIRKY-NKWGAGGANN-----KEMENERAALREKLGDTDSSLVS 631
Query: 662 ET--NTSSFTP---QFGEQVHVKSLGDKLATVVEVPGDDDTVLVQYGKMR 706
+ N P + G+ VHV SL K +V +P + VQ G +R
Sbjct: 632 KAKKNRKQHKPSDFKVGDSVHVISLNLK-GSVSTLPNAKGDLYVQMGILR 680
|
Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) (taxid: 357809) |
| >sp|A6TNX0|MUTS2_ALKMQ MutS2 protein OS=Alkaliphilus metalliredigens (strain QYMF) GN=mutS2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 267 bits (682), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 194/636 (30%), Positives = 317/636 (49%), Gaps = 58/636 (9%)
Query: 15 KSLEESQKLLNQTSAALAMM-QSQPLDLSTIEDIAGILNSAVSGQLLSPSEICAVRRTLR 73
+S E +L ++TS A +++ Q + L I DI L G L P E+ V+ TLR
Sbjct: 38 QSFGEITQLQSETSEAQSILIQRGNIPLGGIHDIKQYLRKTEIGSYLDPKELLLVKDTLR 97
Query: 74 AVNNVWKKLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEKIGFCI--DCKLLIILDRA 131
N+ E GD ++ + L++ +E++I CI D + I D A
Sbjct: 98 TARNLKSFFKE-----GDDQTKHPIVSGLIQGLQSFRAIEDRIEICIVSDTE---ISDHA 149
Query: 132 SEDLELIRAERKRNMENLDSLLKKVAAQIFQAGGIDKPLITKRRSRMCVGIKASHKYLLP 191
S L+ IR + + + + L + + +IT R+ R V +K H+ +P
Sbjct: 150 SSTLKNIRRQISSKNDAVRNKLNGIINSSTTQKYLQDAIITMRQDRYVVPVKQEHRGNVP 209
Query: 192 DGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEETAILSLLTAEIAKSEREIKYL 251
G+ + SSSGAT F+EP V+ NN L E E IL + IA+ E++
Sbjct: 210 -GLIHDQSSSGATLFVEPMAVVQLNNELRELKIKEHIEIERILMEIAEMIAQYATEMRNN 268
Query: 252 MDRVLEIDLAFARAGFAQWMDGVCPILSSQSHVSFDSSINIEGIKHPLLLGSSLRSLSAA 311
+ ID FA+ + M GV P+L+ + +++I+ +HPLL
Sbjct: 269 QIILTAIDFVFAKGKLSLEMKGVEPLLN------VEGNVHIKNGRHPLL----------- 311
Query: 312 SSNSNPLKSDVENSEMTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTL 371
+D VP ++ + + +VITGPNTGGKT ++KTL
Sbjct: 312 ------------------------NADEVVPTNLWIGETFQTLVITGPNTGGKTVTLKTL 347
Query: 372 GLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSR 431
GL S+M+++GL++PA RL FD I ADIGD QS+EQ+LSTFS H++ IV+I+E V+
Sbjct: 348 GLLSMMAQSGLHVPADYGTRLAIFDQIFADIGDEQSIEQSLSTFSSHMTNIVNIVEEVTS 407
Query: 432 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAAT 491
SLVL DE+G+GTDP+EG AL +IL +LR+ V TTHY++L + ENA+
Sbjct: 408 NSLVLFDELGAGTDPTEGAALGMAILNHLREMNVTTVATTHYSELKQYALTNEGVENASV 467
Query: 492 EFSLETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVERLRPERQQHRKSELY 551
EF + TL PTYR+L G G SNA I+K +G ++QRA++ + + + +L
Sbjct: 468 EFDVATLSPTYRLLIGVPGKSNAFEISKKLGLPDGLVQRAKRFLSQDTIHFE-----DLL 522
Query: 552 QSLMEERRKLESQARTAASLHAEIMDLYREIEDEAKDLDRRAAHLKAKETQQVQQELNFA 611
Q++ + RR+ E + + A + E ED + L+ + + ++ + + A
Sbjct: 523 QNIEKNRRESEIERQEAKRIRLEAEKFAEGYEDRKQRLEAQRDQILRDAKKEAYRLVKEA 582
Query: 612 KVQIDTVVQDFENQLRDASADEINSLIKESESAIAA 647
K+ + +++ + A E+N ++++++ +
Sbjct: 583 KMDSEHIIKGLREMKFELEAKEMNKKMEDAKNQLTG 618
|
Alkaliphilus metalliredigens (strain QYMF) (taxid: 293826) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 742 | ||||||
| 224079239 | 908 | predicted protein [Populus trichocarpa] | 0.985 | 0.805 | 0.673 | 0.0 | |
| 255556027 | 873 | DNA mismatch repair protein muts2, putat | 0.942 | 0.800 | 0.653 | 0.0 | |
| 356521351 | 902 | PREDICTED: mutS2 protein-like isoform 2 | 0.971 | 0.799 | 0.639 | 0.0 | |
| 356521349 | 914 | PREDICTED: mutS2 protein-like isoform 1 | 0.971 | 0.788 | 0.639 | 0.0 | |
| 358346679 | 913 | MutS2 family protein [Medicago truncatul | 0.985 | 0.800 | 0.630 | 0.0 | |
| 449457723 | 890 | PREDICTED: mutS2 protein-like [Cucumis s | 0.956 | 0.797 | 0.606 | 0.0 | |
| 334183641 | 876 | DNA mismatch repair protein MutS2 [Arabi | 0.951 | 0.805 | 0.574 | 0.0 | |
| 15217840 | 857 | DNA mismatch repair protein MutS2 [Arabi | 0.950 | 0.822 | 0.575 | 0.0 | |
| 297840849 | 891 | predicted protein [Arabidopsis lyrata su | 0.948 | 0.790 | 0.565 | 0.0 | |
| 242074804 | 912 | hypothetical protein SORBIDRAFT_06g03317 | 0.927 | 0.754 | 0.551 | 0.0 |
| >gi|224079239|ref|XP_002305805.1| predicted protein [Populus trichocarpa] gi|222848769|gb|EEE86316.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1001 bits (2589), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 502/745 (67%), Positives = 604/745 (81%), Gaps = 14/745 (1%)
Query: 1 MGHAVVQKAQIPFGKSLEESQKLLNQTSAALAMMQSQPLDLSTIEDIAGILNSAVSGQLL 60
MG ++ + A+IP GKS EESQKLL+QT+AALA+M+S PLD S IEDI IL+SAVSG LL
Sbjct: 72 MGQSITRNAKIPIGKSKEESQKLLDQTAAALAVMESGPLDFSGIEDITRILDSAVSGTLL 131
Query: 61 SPSEICAVRRTLRAVNNVWKKLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEKIGFCI 120
+ E+CAVRRTLRA V ++L ++ GD +RY+PLLE+L+NC+F ELE+K+GFCI
Sbjct: 132 TVGELCAVRRTLRAARAVLERLKDS----GDCSERYAPLLEILQNCSFQIELEKKVGFCI 187
Query: 121 DCKLLIILDRASEDLELIRAERKRNMENLDSLLKKVAAQIFQAGGIDKPLITKRRSRMCV 180
DC L ILDRASEDLE+IR+ERKRNMENLD LLK ++A+IFQAGGIDKPL+TKRRSR+CV
Sbjct: 188 DCNLSKILDRASEDLEIIRSERKRNMENLDRLLKGISARIFQAGGIDKPLVTKRRSRLCV 247
Query: 181 GIKASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEETAILSLLTAE 240
G++ASH+YL+PDG+ LNVSSSG TYFMEP AVE NN+EV LS+SE AEE AILSLLT+E
Sbjct: 248 GVRASHRYLIPDGVVLNVSSSGVTYFMEPGEAVELNNLEVMLSDSEKAEEIAILSLLTSE 307
Query: 241 IAKSEREIKYLMDRVLEIDLAFARAGFAQWMDGVCPILSSQSHVS-------FDSSINIE 293
IA+S R+IKY++D ++E+DL+FARA +A WM+GV PI +S+ + SI+IE
Sbjct: 308 IAESARDIKYMLDGIIEVDLSFARAAYAYWMNGVRPIWTSEGCGGISSSGGDYLLSIDIE 367
Query: 294 GIKHPLLLGSSLRSLS--AASSNSNPLKSDVENSEMTVGSLSKGISDFPVPIDIKVECET 351
GI+HPLL G+S + LS S++ N ++ D E+S + G SK +S+FPVPI+IKVEC T
Sbjct: 368 GIRHPLLNGTSRKRLSNILGSNSLNSMEVD-EDSMLDTGKPSKNVSEFPVPINIKVECGT 426
Query: 352 RVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQN 411
RVVVI+GPNTGGKTASMKTLG+ASLMSKAGLYLPAKN P+LPWFD +LADIGDHQSLEQN
Sbjct: 427 RVVVISGPNTGGKTASMKTLGVASLMSKAGLYLPAKNTPKLPWFDFVLADIGDHQSLEQN 486
Query: 412 LSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTT 471
LSTFSGHISRI ILE+ S ESLVL+DEI SGTDPSEGVAL+TSIL YLRD V LAVVTT
Sbjct: 487 LSTFSGHISRICKILEVASNESLVLVDEICSGTDPSEGVALSTSILHYLRDHVNLAVVTT 546
Query: 472 HYADLSCLKDKDTRFENAATEFSLETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRA 531
HYADLS LKDKD+RFENAA EFSLETL+PTY+ILWG TGDSNAL+IAKSIGFD II+RA
Sbjct: 547 HYADLSLLKDKDSRFENAAMEFSLETLQPTYQILWGCTGDSNALSIAKSIGFDSNIIERA 606
Query: 532 QKLVERLRPERQQHRKSELYQSLMEERRKLESQARTAASLHAEIMDLYREIEDEAKDLDR 591
+K VE+L PE+QQ R LYQSL+EER +LE+QAR ASLH EIM+LY EI+ E++DLD
Sbjct: 607 RKWVEKLVPEKQQERSGMLYQSLLEERNRLEAQARKGASLHTEIMELYHEIQAESEDLDG 666
Query: 592 RAAHLKAKETQQVQQELNFAKVQIDTVVQDFENQLRDASADEINSLIKESESAIAAIVEA 651
R L AKETQ VQ EL A QI+TVVQ+ E QLR AS D+ NSLIK+SESAIA+IVEA
Sbjct: 667 RVKALMAKETQLVQLELKAANSQIETVVQNVETQLRKASPDQFNSLIKKSESAIASIVEA 726
Query: 652 HRPDDDFSVSETNTSSFTPQFGEQVHVKSLGDKLATVVEVPGDDDTVLVQYGKMRVRVKK 711
H D SET+TSS+TPQ GEQV VK LG+KLATVVE P DD+TVLVQYGK+RVR+KK
Sbjct: 727 HCSSDSLPASETDTSSYTPQLGEQVLVKRLGNKLATVVEAPRDDETVLVQYGKIRVRMKK 786
Query: 712 NNIRPIPNSKRKNAANPAPRLRKQV 736
++IR I + K+ A P L++QV
Sbjct: 787 SDIRAIKSDKKSKATILVPSLKRQV 811
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255556027|ref|XP_002519048.1| DNA mismatch repair protein muts2, putative [Ricinus communis] gi|223541711|gb|EEF43259.1| DNA mismatch repair protein muts2, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 979 bits (2531), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 485/742 (65%), Positives = 589/742 (79%), Gaps = 43/742 (5%)
Query: 1 MGHAVVQKAQIPFGKSLEESQKLLNQTSAALAMMQSQPLDLSTIEDIAGILNSAVSGQLL 60
MGH+ + A IP G+S++ES+ LL+QT+AALAMMQ LD S IEDI GI+NSAVSG LL
Sbjct: 71 MGHSAARSASIPIGESIQESRMLLDQTTAALAMMQYGTLDFSAIEDITGIVNSAVSGNLL 130
Query: 61 SPSEICAVRRTLRAVNNVWKKLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEKIGFCI 120
+ SE+CAVRRTL A V ++L + GD L+R PLLE+ ++CN +LE+KIGFCI
Sbjct: 131 TVSELCAVRRTLEAAKAVLERLKDG----GDCLERSYPLLEIFRSCNLQIQLEQKIGFCI 186
Query: 121 DCKLLIILDRASEDLELIRAERKRNMENLDSLLKKVAAQIFQAGGIDKPLITKRRSRMCV 180
DC LLIILDRASEDLELIR ERK+ MENLD+LLK ++ +IFQAGGID+P +TKRRSR+CV
Sbjct: 187 DCNLLIILDRASEDLELIRYERKKTMENLDNLLKGISTRIFQAGGIDRPFVTKRRSRLCV 246
Query: 181 GIKASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEETAILSLLTAE 240
G++A+H+YL+PDG+ L+VS SGATYF+EP AVE NN+EV LSNSE AEE AILSLLT+E
Sbjct: 247 GVRATHRYLIPDGVILDVSGSGATYFVEPGDAVELNNLEVMLSNSERAEEIAILSLLTSE 306
Query: 241 IAKSEREIKYLMDRVLEIDLAFARAGFAQWMDGVCPILSSQ-------SHVSFDSSINIE 293
IA+SER+IK L+D +LE+DLAFARA +A+ ++GVCP +S+ S ++ SI+IE
Sbjct: 307 IAESERDIKKLLDGILEVDLAFARAAYARQINGVCPTFTSEGYEGEPSSRANYALSIDIE 366
Query: 294 GIKHPLLLGSSLRSLSAASSNSNPLKSDVENSEMTVGSLSKGISDFPVPIDIKVECETRV 353
GI+HPLLLGSS + FPVPI+IKVEC TRV
Sbjct: 367 GIQHPLLLGSSQQK-------------------------------FPVPINIKVECGTRV 395
Query: 354 VVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLS 413
VVI+GPNTGGKTASMKTLG+ASLMSKAGL+LPA+N P++PWFD++LADIGD+QSLEQNLS
Sbjct: 396 VVISGPNTGGKTASMKTLGIASLMSKAGLFLPARNTPKIPWFDVVLADIGDNQSLEQNLS 455
Query: 414 TFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHY 473
TFSGHISRI ILE+ S+ESLVLIDEI SGTDPSEGVAL+TSILQYLRDRV LAVVTTHY
Sbjct: 456 TFSGHISRICKILEVTSKESLVLIDEICSGTDPSEGVALSTSILQYLRDRVNLAVVTTHY 515
Query: 474 ADLSCLKDKDTRFENAATEFSLETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQK 533
ADLS LKD D++FENAA EFSLETL+PTY+ILWGSTG+SNAL+IAKSIGFD II+RA+K
Sbjct: 516 ADLSLLKDSDSQFENAAMEFSLETLQPTYQILWGSTGNSNALSIAKSIGFDSNIIERAEK 575
Query: 534 LVERLRPERQQHRKSELYQSLMEERRKLESQARTAASLHAEIMDLYREIEDEAKDLDRRA 593
VE+L PE+QQHRK LY+SLM+ER KLE+QAR AAS+HA+IM+LY EI+DEA +LD R
Sbjct: 576 WVEKLIPEKQQHRKGLLYKSLMDERNKLEAQAREAASVHAQIMELYYEIQDEAGNLDSRI 635
Query: 594 AHLKAKETQQVQQELNFAKVQIDTVVQDFENQLRDASADEINSLIKESESAIAAIVEAHR 653
L AKETQQVQQEL K QI+TVV +FEN LR AS + NSLI++SESAIA+IVEAH
Sbjct: 636 MALMAKETQQVQQELKATKSQIETVVHNFENLLRKASPLQFNSLIRKSESAIASIVEAHY 695
Query: 654 PDDDFSVSETNTSSFTPQFGEQVHVKSLGDKLATVVEVPGDDDTVLVQYGKMRVRVKKNN 713
P D+ SE + SS+TPQ GEQVH+K G+K+ATVVE PG D+T+LVQYGK+RVRVKK++
Sbjct: 696 PADNLPASE-DVSSYTPQLGEQVHLKGFGNKVATVVEAPGKDETILVQYGKIRVRVKKSD 754
Query: 714 IRPIPNSKRKNAANPAPRLRKQ 735
IR I KR A PRL++Q
Sbjct: 755 IRAIQGKKRTEATKLVPRLKRQ 776
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356521351|ref|XP_003529320.1| PREDICTED: mutS2 protein-like isoform 2 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 952 bits (2462), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 475/743 (63%), Positives = 582/743 (78%), Gaps = 22/743 (2%)
Query: 1 MGHAVVQKAQIPFGKSLEESQKLLNQTSAALAMMQSQPLDLSTIEDIAGILNSAVSGQLL 60
MG A A++P G++ +SQ+LL+QTSAA + ++PLD S + D+ IL A SG LL
Sbjct: 61 MGSAAALNARLPIGRTRRDSQRLLDQTSAA--RLVAEPLDFSGVHDLTEILGVATSGHLL 118
Query: 61 SPSEICAVRRTLRAVNNVWKKLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEKIGFCI 120
+ E+C VR TL A ++ L A QRY PLL++L+NCNF LE KI FCI
Sbjct: 119 TIRELCTVRHTLAAARELFDALKRVASASNHP-QRYLPLLDILQNCNFQVGLERKIEFCI 177
Query: 121 DCKLLIILDRASEDLELIRAERKRNMENLDSLLKKVAAQIFQAGGIDKPLITKRRSRMCV 180
DCKL IILDRASEDLE+IR+ERKRN+E LDSLLK+V++QIFQAGGID+PLI KRRSRMCV
Sbjct: 178 DCKLSIILDRASEDLEIIRSERKRNIEILDSLLKEVSSQIFQAGGIDRPLIVKRRSRMCV 237
Query: 181 GIKASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEETAILSLLTAE 240
GI+ASH+YLLPDG+ LNVSSSGATYFMEPK A++ NN+EVRLS+SE AEE+ ILS+L +E
Sbjct: 238 GIRASHRYLLPDGVVLNVSSSGATYFMEPKDAIDLNNLEVRLSSSEKAEESVILSMLASE 297
Query: 241 IAKSEREIKYLMDRVLEIDLAFARAGFAQWMDGVCPILSSQSHVSFDS------------ 288
IA SE +I +L+D++L++DLAFARA +AQWM+GVCPI S + DS
Sbjct: 298 IANSESDINHLLDKILKVDLAFARAAYAQWMNGVCPIFSLGNFEGRDSVEDDDDTLVTQE 357
Query: 289 ----SINIEGIKHPLLLGSSLRSLSAASSNSNPLKSDVENSEMTVGS--LSKGISDFPVP 342
+++I GI+HPLLL SSL ++S + + ++ N T+ S + +GISDFPVP
Sbjct: 358 DDDLTVDIVGIRHPLLLESSLENISDNLTLRSGNAAEFGNGNGTMASKYMPQGISDFPVP 417
Query: 343 IDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADI 402
+D K+ TRVVVI+GPNTGGKTASMKTLGLASLMSKAG++LPAK +P+LPWFDLILADI
Sbjct: 418 VDFKIGHGTRVVVISGPNTGGKTASMKTLGLASLMSKAGMHLPAKKNPKLPWFDLILADI 477
Query: 403 GDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD 462
GDHQSLEQNLSTFSGHISRI ILE+ S +SLVLIDEIG GTDPSEGVAL+ SILQYL+D
Sbjct: 478 GDHQSLEQNLSTFSGHISRICKILEVASTQSLVLIDEIGGGTDPSEGVALSASILQYLKD 537
Query: 463 RVGLAVVTTHYADLSCLKDKDTRFENAATEFSLETLRPTYRILWGSTGDSNALNIAKSIG 522
RV LAVVTTHYADLS +K+KDTRF+NAA EFSLETL+PTYRILWG TGDSNAL+IA+SIG
Sbjct: 538 RVNLAVVTTHYADLSSMKEKDTRFDNAAMEFSLETLQPTYRILWGCTGDSNALSIAQSIG 597
Query: 523 FDRKIIQRAQKLVERLRPERQQHRKSELYQSLMEERRKLESQARTAASLHAEIMDLYREI 582
FDR II RAQK VE+ +PE+QQ R+ LYQSL EER +L++QA AAS+HAEIM +Y EI
Sbjct: 598 FDRNIIDRAQKWVEKFKPEQQQERRGMLYQSLQEERNQLKAQAEKAASVHAEIMSVYNEI 657
Query: 583 EDEAKDLDRRAAHLKAKETQQVQQELNFAKVQIDTVVQDFENQLRDASADEINSLIKESE 642
+ EA+DLD+R L AKETQQVQ EL AK QI+TV+Q FE QLR + D++N LI+ESE
Sbjct: 658 QGEAEDLDQREMELMAKETQQVQHELEHAKSQIETVIQKFEKQLRISGRDQLNYLIRESE 717
Query: 643 SAIAAIVEAHRPDDDFSVSETNTSSFTPQFGEQVHVKSLGDKLATVVEVPGDDDTVLVQY 702
SAIA+IV+AH P D F ++E + + +TPQ GEQVHVK LG KLATVVE PGDD T++VQY
Sbjct: 718 SAIASIVKAHTPADSFPINEADRALYTPQIGEQVHVKGLGGKLATVVESPGDDGTIMVQY 777
Query: 703 GKMRVRVKKNNIRPIPNSKRKNA 725
GK++VRVKK+NI IP+S RKNA
Sbjct: 778 GKVKVRVKKSNIIAIPSS-RKNA 799
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356521349|ref|XP_003529319.1| PREDICTED: mutS2 protein-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 952 bits (2461), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 475/743 (63%), Positives = 583/743 (78%), Gaps = 22/743 (2%)
Query: 1 MGHAVVQKAQIPFGKSLEESQKLLNQTSAALAMMQSQPLDLSTIEDIAGILNSAVSGQLL 60
MG A A++P G++ +SQ+LL+QTSAA + ++PLD S + D+ IL A SG LL
Sbjct: 61 MGSAAALNARLPIGRTRRDSQRLLDQTSAA--RLVAEPLDFSGVHDLTEILGVATSGHLL 118
Query: 61 SPSEICAVRRTLRAVNNVWKKLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEKIGFCI 120
+ E+C VR TL A ++ L A + QRY PLL++L+NCNF LE KI FCI
Sbjct: 119 TIRELCTVRHTLAAARELFDALKRVASA-SNHPQRYLPLLDILQNCNFQVGLERKIEFCI 177
Query: 121 DCKLLIILDRASEDLELIRAERKRNMENLDSLLKKVAAQIFQAGGIDKPLITKRRSRMCV 180
DCKL IILDRASEDLE+IR+ERKRN+E LDSLLK+V++QIFQAGGID+PLI KRRSRMCV
Sbjct: 178 DCKLSIILDRASEDLEIIRSERKRNIEILDSLLKEVSSQIFQAGGIDRPLIVKRRSRMCV 237
Query: 181 GIKASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEETAILSLLTAE 240
GI+ASH+YLLPDG+ LNVSSSGATYFMEPK A++ NN+EVRLS+SE AEE+ ILS+L +E
Sbjct: 238 GIRASHRYLLPDGVVLNVSSSGATYFMEPKDAIDLNNLEVRLSSSEKAEESVILSMLASE 297
Query: 241 IAKSEREIKYLMDRVLEIDLAFARAGFAQWMDGVCPILSSQSHVSFDS------------ 288
IA SE +I +L+D++L++DLAFARA +AQWM+GVCPI S + DS
Sbjct: 298 IANSESDINHLLDKILKVDLAFARAAYAQWMNGVCPIFSLGNFEGRDSVEDDDDTLVTQE 357
Query: 289 ----SINIEGIKHPLLLGSSLRSLSAASSNSNPLKSDVENSEMTVGS--LSKGISDFPVP 342
+++I GI+HPLLL SSL ++S + + ++ N T+ S + +GISDFPVP
Sbjct: 358 DDDLTVDIVGIRHPLLLESSLENISDNLTLRSGNAAEFGNGNGTMASKYMPQGISDFPVP 417
Query: 343 IDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADI 402
+D K+ TRVVVI+GPNTGGKTASMKTLGLASLMSKAG++LPAK +P+LPWFDLILADI
Sbjct: 418 VDFKIGHGTRVVVISGPNTGGKTASMKTLGLASLMSKAGMHLPAKKNPKLPWFDLILADI 477
Query: 403 GDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD 462
GDHQSLEQNLSTFSGHISRI ILE+ S +SLVLIDEIG GTDPSEGVAL+ SILQYL+D
Sbjct: 478 GDHQSLEQNLSTFSGHISRICKILEVASTQSLVLIDEIGGGTDPSEGVALSASILQYLKD 537
Query: 463 RVGLAVVTTHYADLSCLKDKDTRFENAATEFSLETLRPTYRILWGSTGDSNALNIAKSIG 522
RV LAVVTTHYADLS +K+KDTRF+NAA EFSLETL+PTYRILWG TGDSNAL+IA+SIG
Sbjct: 538 RVNLAVVTTHYADLSSMKEKDTRFDNAAMEFSLETLQPTYRILWGCTGDSNALSIAQSIG 597
Query: 523 FDRKIIQRAQKLVERLRPERQQHRKSELYQSLMEERRKLESQARTAASLHAEIMDLYREI 582
FDR II RAQK VE+ +PE+QQ R+ LYQSL EER +L++QA AAS+HAEIM +Y EI
Sbjct: 598 FDRNIIDRAQKWVEKFKPEQQQERRGMLYQSLQEERNQLKAQAEKAASVHAEIMSVYNEI 657
Query: 583 EDEAKDLDRRAAHLKAKETQQVQQELNFAKVQIDTVVQDFENQLRDASADEINSLIKESE 642
+ EA+DLD+R L AKETQQVQ EL AK QI+TV+Q FE QLR + D++N LI+ESE
Sbjct: 658 QGEAEDLDQREMELMAKETQQVQHELEHAKSQIETVIQKFEKQLRISGRDQLNYLIRESE 717
Query: 643 SAIAAIVEAHRPDDDFSVSETNTSSFTPQFGEQVHVKSLGDKLATVVEVPGDDDTVLVQY 702
SAIA+IV+AH P D F ++E + + +TPQ GEQVHVK LG KLATVVE PGDD T++VQY
Sbjct: 718 SAIASIVKAHTPADSFPINEADRALYTPQIGEQVHVKGLGGKLATVVESPGDDGTIMVQY 777
Query: 703 GKMRVRVKKNNIRPIPNSKRKNA 725
GK++VRVKK+NI IP+S RKNA
Sbjct: 778 GKVKVRVKKSNIIAIPSS-RKNA 799
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|358346679|ref|XP_003637393.1| MutS2 family protein [Medicago truncatula] gi|355503328|gb|AES84531.1| MutS2 family protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 947 bits (2449), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 476/755 (63%), Positives = 587/755 (77%), Gaps = 24/755 (3%)
Query: 1 MGHAVVQKAQIPFGKSLEESQKLLNQTSAALAMMQSQPLDLSTIEDIAGILNSAVSGQLL 60
MG + A++P G + SQKLL+QTSAA + Q Q LD S I D+ IL+ +VSG+LL
Sbjct: 59 MGSSAANNARLPVGLTPHHSQKLLDQTSAARLVPQQQ-LDFSGIHDLTDILSVSVSGKLL 117
Query: 61 SPSEICAVRRTLRAVNNVWKKLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEKIGFCI 120
+ E+C VRRTL + ++ L A + S RYSPLLE+L+NCNFL LE +I FCI
Sbjct: 118 TVPELCTVRRTLSSARELFDTLRHLASVSNHS-HRYSPLLEILQNCNFLMGLERRIEFCI 176
Query: 121 DCKLLIILDRASEDLELIRAERKRNMENLDSLLKKVAAQIFQAGGIDKPLITKRRSRMCV 180
DC LL+ILDRASEDLE+IR+ERKRN+E LDSLLK+V++QIF+AGGID+P ITKRRSRMCV
Sbjct: 177 DCNLLVILDRASEDLEIIRSERKRNIEILDSLLKEVSSQIFRAGGIDRPFITKRRSRMCV 236
Query: 181 GIKASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEETAILSLLTAE 240
GI+AS++YLLP+GI LN SSSGATYFMEPK A++ NNMEVRLSNSE AEE AILS+L +E
Sbjct: 237 GIRASYRYLLPEGIVLNASSSGATYFMEPKEAIDLNNMEVRLSNSEAAEERAILSMLASE 296
Query: 241 IAKSEREIKYLMDRVLEIDLAFARAGFAQWMDGVCPILS-----------SQSHVSF--- 286
IA S+ EI YL+D++LE+DLAFARA +AQWM+GVCPI S + +S
Sbjct: 297 IANSKSEINYLLDKILEVDLAFARAAYAQWMNGVCPIFSLGTLEVCESVEKDNDISVVQD 356
Query: 287 -DSSINIEGIKHPLLLGSSLRSLS----AASSNSNPLKSDVENSEMTVGSLSKGISDFPV 341
D ++NIEG++HPLLL SSL ++S S N+ L + N M S S+GI+DFPV
Sbjct: 357 DDLTVNIEGMRHPLLLESSLENISDNVTLRSGNAAELGNG--NGTMASKSASQGITDFPV 414
Query: 342 PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILAD 401
P+D K+ TRVVVI+GPNTGGKTASMKTLGLASLMSKAG++LPAK P+LPWFDLIL D
Sbjct: 415 PVDFKIRSGTRVVVISGPNTGGKTASMKTLGLASLMSKAGMHLPAKKSPKLPWFDLILVD 474
Query: 402 IGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLR 461
IGDHQSLEQNLSTFSGHISRI LE+ S++SLVLIDEIGSGTDPSEGVAL+ SILQYLR
Sbjct: 475 IGDHQSLEQNLSTFSGHISRIRKFLEVASKQSLVLIDEIGSGTDPSEGVALSASILQYLR 534
Query: 462 DRVGLAVVTTHYADLSCLKDKDTRFENAATEFSLETLRPTYRILWGSTGDSNALNIAKSI 521
+ V LAVVTTHYADLS +K+KDT FENAA EFSLETL+PTYR+LWG TGDSNAL+IA+SI
Sbjct: 535 EHVNLAVVTTHYADLSTMKEKDTCFENAAMEFSLETLQPTYRVLWGCTGDSNALSIAQSI 594
Query: 522 GFDRKIIQRAQKLVERLRPERQQHRKSELYQSLMEERRKLESQARTAASLHAEIMDLYRE 581
GFD+ II AQK VE+L+PE+QQ R+ LYQSL EE+ +L++QA AAS+HAEIM++Y E
Sbjct: 595 GFDKNIIDHAQKWVEKLKPEQQQERRGMLYQSLQEEKNRLKAQAEKAASIHAEIMNVYSE 654
Query: 582 IEDEAKDLDRRAAHLKAKETQQVQQELNFAKVQIDTVVQDFENQLRDASADEINSLIKES 641
I+ EA+DLDRR L AKE QQVQQEL AK Q++ V+Q FE QL+D +++NS+IKES
Sbjct: 655 IQGEAEDLDRRETMLMAKEAQQVQQELEDAKSQMEIVIQKFEKQLKDLGRNQLNSIIKES 714
Query: 642 ESAIAAIVEAHRPDDDFSVSETN-TSSFTPQFGEQVHVKSLGDKLATVVEVPGDDDTVLV 700
E+AIA+IV+AH P F +++ + T+S+TPQFGEQV VK LG KLATVVE+ GDD+T+LV
Sbjct: 715 ETAIASIVKAHTPAVGFPINDADRTTSYTPQFGEQVRVKGLGGKLATVVELLGDDETILV 774
Query: 701 QYGKMRVRVKKNNIRPIPNSKRKNAANPAPRLRKQ 735
QYGK++VRVKKN IR IP S + + A +Q
Sbjct: 775 QYGKVKVRVKKNRIRAIPPSAKNPVTSSATHQGRQ 809
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449457723|ref|XP_004146597.1| PREDICTED: mutS2 protein-like [Cucumis sativus] gi|449531305|ref|XP_004172627.1| PREDICTED: mutS2 protein-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 902 bits (2330), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 452/745 (60%), Positives = 577/745 (77%), Gaps = 35/745 (4%)
Query: 1 MGHAVVQKAQIPFGKSLEESQKLLNQTSAALAMMQ-SQPLDLSTIEDIAGILNSAVSGQL 59
MG V QKA + FG++ EESQKLL+QT+AA A++ S+ LD S IED++GILNSA+SG+L
Sbjct: 69 MGFDVAQKADVRFGRTREESQKLLDQTTAAEAVVSTSRRLDFSGIEDVSGILNSAISGKL 128
Query: 60 LSPSEICAVRRTLRAVNNVWKKLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEKIGFC 119
L+ +E+C+VRRTL+A ++++L +A + R+ PL+E+L+NC+FL ELE KI FC
Sbjct: 129 LTIAELCSVRRTLKAARELFEEL-QALAVGNHYSDRFLPLIEILQNCDFLVELERKIEFC 187
Query: 120 IDCKLLIILDRASEDLELIRAERKRNMENLDSLLKKVAAQIFQAGGIDKPLITKRRSRMC 179
IDC IILDRASEDLELIR E+KRNME LDSLLK+V+ +I+QAGGID+PLITKRRSRMC
Sbjct: 188 IDCNYSIILDRASEDLELIRLEKKRNMEELDSLLKEVSFKIYQAGGIDRPLITKRRSRMC 247
Query: 180 VGIKASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEETAILSLLTA 239
V ++A+HK L+ DGI L+ SSSGATYFMEPK AV+ NNMEVRLSNSE AEE +ILS+L+
Sbjct: 248 VAVRATHKNLVSDGILLSTSSSGATYFMEPKNAVDLNNMEVRLSNSEKAEEISILSMLST 307
Query: 240 EIAKSEREIKYLMDRVLEIDLAFARAGFAQWMDGVCPILSSQSHVSFDSSI-------NI 292
EI++SE I+ L+D++LE+DLA ARA + +WM GVCP S++ + +SSI +I
Sbjct: 308 EISESENHIRCLLDKILELDLALARAAYGRWMSGVCPCFSAKGYEGLNSSITDNTLSVDI 367
Query: 293 EGIKHPLLLGSSLRSLSAASSNSNPLKSDVENSEMTVGSLSKGISDFPVPI--DIKVECE 350
+ I++PLLL + L+ S + + DFP+PI DIK+ +
Sbjct: 368 DAIQNPLLLSNYLKKFSGS------------------------VPDFPMPIAIDIKIMHQ 403
Query: 351 TRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQ 410
TRVVVI+GPNTGGKTAS+KTLGLASLM+KAG+YLPAKNHP+LPWFDL+LADIGDHQSLEQ
Sbjct: 404 TRVVVISGPNTGGKTASLKTLGLASLMAKAGMYLPAKNHPKLPWFDLVLADIGDHQSLEQ 463
Query: 411 NLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVT 470
NLSTFSGHISRI ILE+ S ESLVLIDEIGSGTDPSEGVAL+TSIL+YL++ V LA+VT
Sbjct: 464 NLSTFSGHISRICKILEVSSDESLVLIDEIGSGTDPSEGVALSTSILRYLKNCVNLAIVT 523
Query: 471 THYADLSCLKDKDTRFENAATEFSLETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQR 530
THYADLS +KD D+ FENAA EFSLETL+PTY+ILWGSTGDSNAL IA+SIGFD II+R
Sbjct: 524 THYADLSRIKDSDSSFENAAMEFSLETLKPTYKILWGSTGDSNALTIAESIGFDPVIIER 583
Query: 531 AQKLVERLRPERQQHRKSELYQSLMEERRKLESQARTAASLHAEIMDLYREIEDEAKDLD 590
A++ + L PERQ RK L++SL+ ER KLE+Q + ASLHA+I LY EI++EAKDLD
Sbjct: 584 AKQWMVNLTPERQDERKGSLFKSLIGERDKLEAQRQKVASLHADISALYYEIQEEAKDLD 643
Query: 591 RRAAHLKAKETQQVQQELNFAKVQIDTVVQDFENQLRDASADEINSLIKESESAIAAIVE 650
+R L A ET++ QQE K +I+TVVQ+FE QL+ + D+INSLIK++ESAIA+I E
Sbjct: 644 KRERALMALETKRAQQEAAAIKSKIETVVQEFEEQLKTSGTDQINSLIKKAESAIASICE 703
Query: 651 AHRPDDDFSVSETNTSSFTPQFGEQVHVKSLGDKLATVVEVPGDDDTVLVQYGKMRVRVK 710
A+ P + S NT+S+TPQ GEQV V LG+KLATVVEV D++ +LVQYGK++ RVK
Sbjct: 704 AYSPTEHSRPSVANTNSYTPQLGEQVFVTGLGNKLATVVEVSDDEEMILVQYGKIKARVK 763
Query: 711 KNNIRPIPNSKRKNAANPAPRLRKQ 735
K++++ +PNS +K AAN P +KQ
Sbjct: 764 KSSVKALPNSGKKAAANTLPFSKKQ 788
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|334183641|ref|NP_001185315.1| DNA mismatch repair protein MutS2 [Arabidopsis thaliana] gi|6227005|gb|AAF06041.1|AC009360_6 Contains similarity to gb|D90908 DNA mismatch repair protein MutS2 from Synechocystis sp. and is a member of PF|00488 Muts family of mismatch repair proteins [Arabidopsis thaliana] gi|332196205|gb|AEE34326.1| DNA mismatch repair protein MutS2 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 818 bits (2114), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 425/740 (57%), Positives = 555/740 (75%), Gaps = 34/740 (4%)
Query: 1 MGHAVVQKAQIPFGKSLEESQKLLNQTSAALA---MMQSQPLDLSTIEDIAGILNSAVSG 57
MG + + A+IP G S EES+ LLN+TSAALA MM+S+ L LS I+D++ I+ AVSG
Sbjct: 71 MGLSATKNAEIPVGNSPEESRNLLNETSAALAAMEMMKSRGLGLSEIQDLSDIVERAVSG 130
Query: 58 QLLSPSEICAVRRTLRAVNNVWKKLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEKIG 117
QLL+ E+C VR TL A + ++KL +AA D R +PL+++L+ C+F L++KI
Sbjct: 131 QLLTVRELCTVRSTLTAATSTFQKLRKAAISDN----RVTPLVDILQGCDFKDTLQQKIS 186
Query: 118 FCIDCKLLIILDRASEDLELIRAERKRNMENLDSLLKKVAAQIFQAGGIDKPLITKRRSR 177
FCIDC + +ILDRASEDLE+IR+ER+RNMENLDSLLKK++ +IF AGGI+KPLIT+RRSR
Sbjct: 187 FCIDCNMTMILDRASEDLEIIRSERRRNMENLDSLLKKISTKIFLAGGINKPLITQRRSR 246
Query: 178 MCVGIKASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEETAILSLL 237
MCV I+A+HK LLP G+ L+VSSS AT F+EPK AVE NNMEVR +NSE AEE AILS+L
Sbjct: 247 MCVAIRATHKSLLPGGVVLSVSSSRATCFIEPKEAVELNNMEVRHANSEKAEEMAILSIL 306
Query: 238 TAEIAKSEREIKYLMDRVLEIDLAFARAGFAQWMDGVCPILSSQSHVSFDSSINIEGIKH 297
T+E+ ++REI +L+DR+LE+D+AFARA A W++GV P ++S+ + +++I+ +H
Sbjct: 307 TSEVVMAQREILHLLDRILELDIAFARASHANWINGVYPNVTSEHTKTPGLAVDIDSAQH 366
Query: 298 PLLLGSSLRSLSAASSNSNPLKSDVENSEMTVGSLSKGISDFPVPIDIKVECETRVVVIT 357
PLLLGS L S P D+ FPVP+DIKVE +VVVI+
Sbjct: 367 PLLLGSVLGS---------PNGGDI----------------FPVPVDIKVESSAKVVVIS 401
Query: 358 GPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSG 417
GPNTGGKTA +KTLGL SLMSK+G+YLPAKN PRLPWFDLILADIGD QSLEQ+LSTFSG
Sbjct: 402 GPNTGGKTALLKTLGLLSLMSKSGMYLPAKNCPRLPWFDLILADIGDPQSLEQSLSTFSG 461
Query: 418 HISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLS 477
HISRI IL++ S SLVL+DEI SGTDPSEGVALATSILQY+++RV +AVV+THY DLS
Sbjct: 462 HISRIRQILDIASENSLVLLDEICSGTDPSEGVALATSILQYIKNRVNVAVVSTHYGDLS 521
Query: 478 CLKDKDTRFENAATEFSLETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVER 537
LKD + RF+NAA EFS+ETL+PT+R+LWGSTG SNAL +AKSIGF+++I++ A K E+
Sbjct: 522 RLKDNEPRFQNAAMEFSMETLQPTFRVLWGSTGLSNALRVAKSIGFNKRILENAHKWTEK 581
Query: 538 LRPERQQHRKSELYQSLMEERRKLESQARTAASLHAEIMDLYREIEDEAKDLDRRAAHLK 597
L PE+ RK L+QSLMEER KL+ QA A+ H ++M+LY E+E E+ DLD+R L
Sbjct: 582 LNPEQDVERKGSLFQSLMEERNKLKLQATKTAAFHRDLMNLYHELEHESHDLDKRERALL 641
Query: 598 AKETQQVQQELNFAKVQIDTVVQDFENQLRDASADEINSLIKESESAIAAIVEAHRPDDD 657
KETQ+VQ++LN AK +++ +V +FE+QL AD+ NSLI ++E A+A I+EA P D
Sbjct: 642 KKETQKVQEDLNSAKSKMERLVAEFESQLEITQADQYNSLILKTEEAVAEIIEACCPMDP 701
Query: 658 FSVSETNTSSFTPQFGEQVHVKSLGDKLATVVEVPG-DDDTVLVQYGKMRVRVKKNNIRP 716
S+ E S ++PQ GE+V V LGDKL TVVE PG DDDTVLVQ+GK+RVR+KK +I+P
Sbjct: 702 DSLEE-EYSDYSPQAGEKVLVTGLGDKLGTVVEEPGDDDDTVLVQHGKIRVRIKKKDIKP 760
Query: 717 IPNSKRKNAANPAPRLRKQV 736
+P S +N + R ++Q+
Sbjct: 761 LPRSTSSQTSNRSLRSKRQI 780
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15217840|ref|NP_176687.1| DNA mismatch repair protein MutS2 [Arabidopsis thaliana] gi|332196204|gb|AEE34325.1| DNA mismatch repair protein MutS2 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 816 bits (2108), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 425/739 (57%), Positives = 554/739 (74%), Gaps = 34/739 (4%)
Query: 1 MGHAVVQKAQIPFGKSLEESQKLLNQTSAALA---MMQSQPLDLSTIEDIAGILNSAVSG 57
MG + + A+IP G S EES+ LLN+TSAALA MM+S+ L LS I+D++ I+ AVSG
Sbjct: 71 MGLSATKNAEIPVGNSPEESRNLLNETSAALAAMEMMKSRGLGLSEIQDLSDIVERAVSG 130
Query: 58 QLLSPSEICAVRRTLRAVNNVWKKLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEKIG 117
QLL+ E+C VR TL A + ++KL +AA D R +PL+++L+ C+F L++KI
Sbjct: 131 QLLTVRELCTVRSTLTAATSTFQKLRKAAISD----NRVTPLVDILQGCDFKDTLQQKIS 186
Query: 118 FCIDCKLLIILDRASEDLELIRAERKRNMENLDSLLKKVAAQIFQAGGIDKPLITKRRSR 177
FCIDC + +ILDRASEDLE+IR+ER+RNMENLDSLLKK++ +IF AGGI+KPLIT+RRSR
Sbjct: 187 FCIDCNMTMILDRASEDLEIIRSERRRNMENLDSLLKKISTKIFLAGGINKPLITQRRSR 246
Query: 178 MCVGIKASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEETAILSLL 237
MCV I+A+HK LLP G+ L+VSSS AT F+EPK AVE NNMEVR +NSE AEE AILS+L
Sbjct: 247 MCVAIRATHKSLLPGGVVLSVSSSRATCFIEPKEAVELNNMEVRHANSEKAEEMAILSIL 306
Query: 238 TAEIAKSEREIKYLMDRVLEIDLAFARAGFAQWMDGVCPILSSQSHVSFDSSINIEGIKH 297
T+E+ ++REI +L+DR+LE+D+AFARA A W++GV P ++S+ + +++I+ +H
Sbjct: 307 TSEVVMAQREILHLLDRILELDIAFARASHANWINGVYPNVTSEHTKTPGLAVDIDSAQH 366
Query: 298 PLLLGSSLRSLSAASSNSNPLKSDVENSEMTVGSLSKGISDFPVPIDIKVECETRVVVIT 357
PLLLGS L S P D+ FPVP+DIKVE +VVVI+
Sbjct: 367 PLLLGSVLGS---------PNGGDI----------------FPVPVDIKVESSAKVVVIS 401
Query: 358 GPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSG 417
GPNTGGKTA +KTLGL SLMSK+G+YLPAKN PRLPWFDLILADIGD QSLEQ+LSTFSG
Sbjct: 402 GPNTGGKTALLKTLGLLSLMSKSGMYLPAKNCPRLPWFDLILADIGDPQSLEQSLSTFSG 461
Query: 418 HISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLS 477
HISRI IL++ S SLVL+DEI SGTDPSEGVALATSILQY+++RV +AVV+THY DLS
Sbjct: 462 HISRIRQILDIASENSLVLLDEICSGTDPSEGVALATSILQYIKNRVNVAVVSTHYGDLS 521
Query: 478 CLKDKDTRFENAATEFSLETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVER 537
LKD + RF+NAA EFS+ETL+PT+R+LWGSTG SNAL +AKSIGF+++I++ A K E+
Sbjct: 522 RLKDNEPRFQNAAMEFSMETLQPTFRVLWGSTGLSNALRVAKSIGFNKRILENAHKWTEK 581
Query: 538 LRPERQQHRKSELYQSLMEERRKLESQARTAASLHAEIMDLYREIEDEAKDLDRRAAHLK 597
L PE+ RK L+QSLMEER KL+ QA A+ H ++M+LY E+E E+ DLD+R L
Sbjct: 582 LNPEQDVERKGSLFQSLMEERNKLKLQATKTAAFHRDLMNLYHELEHESHDLDKRERALL 641
Query: 598 AKETQQVQQELNFAKVQIDTVVQDFENQLRDASADEINSLIKESESAIAAIVEAHRPDDD 657
KETQ+VQ++LN AK +++ +V +FE+QL AD+ NSLI ++E A+A I+EA P D
Sbjct: 642 KKETQKVQEDLNSAKSKMERLVAEFESQLEITQADQYNSLILKTEEAVAEIIEACCPMDP 701
Query: 658 FSVSETNTSSFTPQFGEQVHVKSLGDKLATVVEVPG-DDDTVLVQYGKMRVRVKKNNIRP 716
S+ E S ++PQ GE+V V LGDKL TVVE PG DDDTVLVQ+GK+RVR+KK +I+P
Sbjct: 702 DSLEE-EYSDYSPQAGEKVLVTGLGDKLGTVVEEPGDDDDTVLVQHGKIRVRIKKKDIKP 760
Query: 717 IPNSKRKNAANPAPRLRKQ 735
+P S +N + R ++Q
Sbjct: 761 LPRSTSSQTSNRSLRSKRQ 779
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297840849|ref|XP_002888306.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297334147|gb|EFH64565.1| predicted protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 807 bits (2084), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 423/748 (56%), Positives = 557/748 (74%), Gaps = 44/748 (5%)
Query: 1 MGHAVVQKAQIPFGKSLEESQKLLNQTSAALAMMQ---SQPLDLSTIEDIAGILNSAVSG 57
MG + + A+IP G S EES+ LL++T+AALA M+ SQ L LS I+D++ I+ AV+G
Sbjct: 79 MGLSATKNAEIPVGNSPEESRNLLDETAAALAAMEMMESQRLGLSEIQDLSDIVERAVAG 138
Query: 58 QLLSPSEICAVRRTLRAVNNVWKKLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEKIG 117
QLL+ E+C+VR TL A +V++KL +AA D +R SPL+ L++ C+F L++KIG
Sbjct: 139 QLLTVRELCSVRSTLMAATSVFQKLRKAAISD----KRVSPLVGLVQGCDFKDTLQQKIG 194
Query: 118 FCIDCKLLIILDRASEDLELIRAERKRNMENLDSLLKKVAAQIFQAGGIDKPLITKRRSR 177
FCIDC + +ILDRASEDLE+IR+ER+RNME LDSLLKK++ QIFQAGGID+PLIT+RRSR
Sbjct: 195 FCIDCNMSMILDRASEDLEIIRSERRRNMEKLDSLLKKISTQIFQAGGIDRPLITQRRSR 254
Query: 178 MCVGIKASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEETAILSLL 237
MCV I+A+HK LLP G+ L+VSSS AT ++EPK AVE NNMEVR +NSE AEE AILS+L
Sbjct: 255 MCVAIRATHKSLLPGGVVLSVSSSRATCYIEPKEAVELNNMEVRHANSEKAEEMAILSIL 314
Query: 238 TAEIAKSEREIKYLMDRVLEIDLAFARAGFAQWMDGVCPILSSQ---------SHVSFDS 288
T+E++ ++++I +L+DR+LE+D+AFARA A+WM+GV P ++S+ H S
Sbjct: 315 TSEVSMAQKDILHLLDRILELDIAFARASHAKWMNGVYPNVTSEHTKTPGLGGDHKSL-- 372
Query: 289 SINIEGIKHPLLLGSSLRSLSAASSNSNPLKSDVENSEMTVGSLSKGISDFPVPIDIKVE 348
S++I+ +HPLLLGS L GS + G+ FPVPIDIKVE
Sbjct: 373 SVDIDSAQHPLLLGSVL------------------------GSPNDGMV-FPVPIDIKVE 407
Query: 349 CETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSL 408
+VVVI+GPNTGGKTA +KTLGL SLMSK+G+YLPAKN PRLPWFD ILADIGD QSL
Sbjct: 408 SRAKVVVISGPNTGGKTALLKTLGLISLMSKSGMYLPAKNCPRLPWFDFILADIGDPQSL 467
Query: 409 EQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAV 468
EQ+LSTFSGHISRI IL++ S SLVL+DEI SGTDPSEGVALATSILQY+++RV +AV
Sbjct: 468 EQSLSTFSGHISRIRQILDIASENSLVLLDEICSGTDPSEGVALATSILQYIKNRVNVAV 527
Query: 469 VTTHYADLSCLKDKDTRFENAATEFSLETLRPTYRILWGSTGDSNALNIAKSIGFDRKII 528
V+THY DLS LKD + +F+NAA EFS+ETL+PT+R+LWGSTG SNAL +AKSIGF+ I+
Sbjct: 528 VSTHYGDLSRLKDNEPQFQNAAMEFSMETLQPTFRVLWGSTGLSNALTVAKSIGFNTGIL 587
Query: 529 QRAQKLVERLRPERQQHRKSELYQSLMEERRKLESQARTAASLHAEIMDLYREIEDEAKD 588
+ A K E+L PE+ RK L+QSL+EER KL+ QA + H ++M+LY E+E E+ D
Sbjct: 588 ENAHKWTEKLNPEQDVERKGSLFQSLVEERNKLKLQASKTEAFHRDLMNLYHELEHESHD 647
Query: 589 LDRRAAHLKAKETQQVQQELNFAKVQIDTVVQDFENQLRDASADEINSLIKESESAIAAI 648
L++R L KETQ+VQ++LN AK ++ +V +F++QL A AD+ NSLI ++E A+A I
Sbjct: 648 LEKRERALLKKETQKVQEDLNSAKSKMQKLVAEFKSQLEIAQADQYNSLILKTEEAVAEI 707
Query: 649 VEAHRPDDDFSVSETNTSSFTPQFGEQVHVKSLGDKLATVVEVPGDDDTVLVQYGKMRVR 708
+EA P D S+ E S ++PQ GE+V V LGDKL TVVE PGDD+TVLVQ+GK+RVR
Sbjct: 708 IEACCPIDLDSIEEP-YSDYSPQAGEKVLVTGLGDKLGTVVEEPGDDETVLVQHGKIRVR 766
Query: 709 VKKNNIRPIPNSKRKNAANPAPRLRKQV 736
+KK +I+P+P S +N + R ++QV
Sbjct: 767 IKKKDIKPLPRSTSSQTSNRSLRSKRQV 794
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|242074804|ref|XP_002447338.1| hypothetical protein SORBIDRAFT_06g033170 [Sorghum bicolor] gi|241938521|gb|EES11666.1| hypothetical protein SORBIDRAFT_06g033170 [Sorghum bicolor] | Back alignment and taxonomy information |
|---|
Score = 758 bits (1957), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 397/720 (55%), Positives = 542/720 (75%), Gaps = 32/720 (4%)
Query: 2 GHAVVQKAQIPFGKSLEESQKLLNQTSAALAMMQSQPLDLSTIEDIAGILNSAVSGQLLS 61
G A + ++P G+S EES++ ++QT+AA+ + PLD +ED++ ++ +A SG+ L+
Sbjct: 92 GRAACEGRRVPVGRSREESERFIDQTAAAVLL--PTPLDFGGVEDVSALVAAAASGRALA 149
Query: 62 PSEICAVRRTLRAVNNVWKKLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEKIGFCID 121
E+CAV R++RAV V+ +L A+ D RYS L+++L+ C+FLTEL ++I FC+D
Sbjct: 150 VRELCAVGRSIRAVRAVFDQLKRLADEMPDG--RYSSLVDILQGCDFLTELVQRIEFCLD 207
Query: 122 CKLLIILDRASEDLELIRAERKRNMENLDSLLKKVAAQIFQAGGIDKPLITKRRSRMCVG 181
L ++LDRAS+ LE+IR ER+RN+E L+SLLK AA+IFQAGGID PL+TKRRSRMCVG
Sbjct: 208 STLSLVLDRASKKLEIIRRERRRNIEMLESLLKDTAAKIFQAGGIDSPLVTKRRSRMCVG 267
Query: 182 IKASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEETAILSLLTAEI 241
+KASHK+L+P GI L+ S SGATYF+EP+ AVE NN EV+LS E AEE AILSLLT+ I
Sbjct: 268 VKASHKHLVPGGIVLSSSGSGATYFVEPRDAVELNNREVKLSGDERAEELAILSLLTSMI 327
Query: 242 AKSEREIKYLMDRVLEIDLAFARAGFAQWMDGVCPILS-----SQSHVSFDSSINIEGIK 296
A S+ +I+ LMD+VLE+DLA AR +A+W +GV P S SQS D S+ IEGI+
Sbjct: 328 ADSQLKIRNLMDKVLELDLACARGSYARWTNGVKPTFSDSYTISQSDQCTDYSVYIEGIR 387
Query: 297 HPLLLGSSLRSLSAASSNSNPLKSDVENSEMTVGSLSKGISDFPVPIDIKVECETRVVVI 356
HPLLL E S M S ++ S+ PVP+D+ V+ R+VVI
Sbjct: 388 HPLLL---------------------EQSLMAEESTTRA-SEMPVPLDMWVKKHARIVVI 425
Query: 357 TGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFS 416
+GPNTGGKTA+MKTLGL+SLMSKAG++ PAK PR+PWFD +LADIGDHQSLE +LSTFS
Sbjct: 426 SGPNTGGKTATMKTLGLSSLMSKAGMFFPAKGSPRIPWFDQVLADIGDHQSLEHSLSTFS 485
Query: 417 GHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL 476
GHISR+ I+E+VS++SLVLIDEIGSGTDPSEGVAL+TSIL+YL +V LA+VTTHYADL
Sbjct: 486 GHISRLRKIVEIVSKDSLVLIDEIGSGTDPSEGVALSTSILKYLASKVNLAIVTTHYADL 545
Query: 477 SCLKDKDTRFENAATEFSLETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVE 536
S L+ D RFENAA EF +ETL+PTYRILWGSTG+SNAL+IAKSIGFD+K++ RAQ+ VE
Sbjct: 546 SRLQSVDNRFENAAMEFCVETLQPTYRILWGSTGNSNALSIAKSIGFDQKVLDRAQEWVE 605
Query: 537 RLRPERQQHRKSELYQSLMEERRKLESQARTAASLHAEIMDLYREIEDEAKDLDRRAAHL 596
+L P++Q+ R+ LY SL++E++ LESQA AAS+ +++ LY EI EA DL+ R A L
Sbjct: 606 KLLPDKQKERQGLLYDSLLDEKKLLESQANEAASVLSQVEGLYNEIRLEADDLESRVAGL 665
Query: 597 KAKETQQVQQELNFAKVQIDTVVQDFENQLRDASADEINSLIKESESAIAAIVEAHRPDD 656
+A+ETQ+VQQEL K Q+DT++++FE QL+++ ++ NSL++++E+A A++V AH+P++
Sbjct: 666 RARETQKVQQELKVVKSQMDTIIKNFEAQLKNSKLEQYNSLMRKAEAATASVVAAHQPNE 725
Query: 657 DFSVSETNTSSFTPQFGEQVHVKSL-GDKLATVVEVPGDDDTVLVQYGKMRVRVKKNNIR 715
+ N SSF PQ G++V+++ L G +ATVVE G+D++ +VQYGK++VRVK+N I+
Sbjct: 726 ITFDDDENQSSFVPQIGDKVYIQGLGGGTMATVVETFGEDESCMVQYGKIKVRVKRNKIK 785
|
Source: Sorghum bicolor Species: Sorghum bicolor Genus: Sorghum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 742 | ||||||
| UNIPROTKB|Q3ABU1 | 777 | mutS2 "MutS2 protein" [Carboxy | 0.498 | 0.476 | 0.322 | 1.6e-69 | |
| TIGR_CMR|CHY_1564 | 777 | CHY_1564 "DNA mismatch repair | 0.498 | 0.476 | 0.322 | 1.6e-69 | |
| TIGR_CMR|BA_4794 | 786 | BA_4794 "MutS2 family protein" | 0.506 | 0.478 | 0.327 | 2.1e-65 | |
| UNIPROTKB|Q76DY7 | 744 | mutS2 "MutS2 protein" [Thermus | 0.366 | 0.365 | 0.400 | 5e-60 | |
| UNIPROTKB|Q720J7 | 785 | mutS2 "MutS2 protein" [Listeri | 0.497 | 0.470 | 0.324 | 4.9e-58 | |
| UNIPROTKB|Q81YJ6 | 633 | BAS3289 "Putative MutS family | 0.296 | 0.347 | 0.357 | 2.8e-54 | |
| TIGR_CMR|BA_3547 | 633 | BA_3547 "MutS family protein, | 0.296 | 0.347 | 0.357 | 2.8e-54 | |
| TIGR_CMR|GSU_0547 | 792 | GSU_0547 "MutS2 family protein | 0.435 | 0.407 | 0.323 | 4e-51 | |
| UNIPROTKB|A8HMH7 | 1204 | CHLREDRAFT_146712 "Predicted p | 0.357 | 0.220 | 0.379 | 3e-47 | |
| UNIPROTKB|O66652 | 859 | mutS "DNA mismatch repair prot | 0.320 | 0.277 | 0.276 | 8.4e-22 |
| UNIPROTKB|Q3ABU1 mutS2 "MutS2 protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 533 (192.7 bits), Expect = 1.6e-69, Sum P(2) = 1.6e-69
Identities = 124/384 (32%), Positives = 216/384 (56%)
Query: 341 VPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILA 400
VP D+ + E +++ITGPNTGGKT ++KT+G+ ++M++AGL++PA + F +
Sbjct: 311 VPFDLTLGKEFDLLIITGPNTGGKTVTLKTIGILTIMARAGLFIPASPETEIGLFGEVYV 370
Query: 401 DIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYL 460
DIGD QS+ Q+LSTFS H+ + ILE LVL+DE+G+GTDP EG ALA +IL+ L
Sbjct: 371 DIGDEQSIVQSLSTFSSHLLNLKFILENAREGDLVLLDELGTGTDPREGAALAKAILEEL 430
Query: 461 RDRVGLAVVTTHYADLSCLKDKDTRFENAATEFSLETLRPTYRILWGSTGDSNALNIAKS 520
R + V TTH ++L+ + R ENA+ EF E+L+PTYR+ G G SNAL IA+
Sbjct: 431 RGKKVKVVATTHTSELAAYAIETERVENASVEFDPESLKPTYRLHIGKPGRSNALYIAQG 490
Query: 521 IGFDRKIIQRAQKLVERLRPERQQHRKSELYQSLMEERRKLESQARTAASLHAEIMDLYR 580
+G +II++A+ ++ ++ + +L + +E+R+LE A+L + +
Sbjct: 491 LGLKEQIIEKAKSFLKE-----EELKLDKLIFDVEQEKRQLEKAKEEVANLLISLKEKEA 545
Query: 581 EIEDEAKDLDRRAAHLKAKETQQVQQELNFAKVQIDTVVQDFENQLRDASADEINXXXXX 640
++ DE ++L++ + K ++ QQ+L + + V+++ + +++ + +E N
Sbjct: 546 KLNDELENLEKTKEEIIRKYREKYQQKLLEIERKGKLVIEEIKEKIK--TYEEKNLAKLL 603
Query: 641 XXXXXXXXXXXHRPDDDFSVSETNTSSFTPQFGEQVHVKSLGDKLATVVEVPGDDDTVLV 700
+F++ + P+ GE V + +G K A V+ V ++ +V
Sbjct: 604 EEARQKTKEFSQ----NFALPFEPIKPYRPKVGETVELVEVGQK-AEVLAV--GENYAIV 656
Query: 701 QYGKMRVRVKKNNIRPIPNSKRKN 724
Q G M++ V + IRP +++N
Sbjct: 657 QAGIMKLNVSFDQIRPAQKQEKEN 680
|
|
| TIGR_CMR|CHY_1564 CHY_1564 "DNA mismatch repair protein MutS" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 533 (192.7 bits), Expect = 1.6e-69, Sum P(2) = 1.6e-69
Identities = 124/384 (32%), Positives = 216/384 (56%)
Query: 341 VPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILA 400
VP D+ + E +++ITGPNTGGKT ++KT+G+ ++M++AGL++PA + F +
Sbjct: 311 VPFDLTLGKEFDLLIITGPNTGGKTVTLKTIGILTIMARAGLFIPASPETEIGLFGEVYV 370
Query: 401 DIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYL 460
DIGD QS+ Q+LSTFS H+ + ILE LVL+DE+G+GTDP EG ALA +IL+ L
Sbjct: 371 DIGDEQSIVQSLSTFSSHLLNLKFILENAREGDLVLLDELGTGTDPREGAALAKAILEEL 430
Query: 461 RDRVGLAVVTTHYADLSCLKDKDTRFENAATEFSLETLRPTYRILWGSTGDSNALNIAKS 520
R + V TTH ++L+ + R ENA+ EF E+L+PTYR+ G G SNAL IA+
Sbjct: 431 RGKKVKVVATTHTSELAAYAIETERVENASVEFDPESLKPTYRLHIGKPGRSNALYIAQG 490
Query: 521 IGFDRKIIQRAQKLVERLRPERQQHRKSELYQSLMEERRKLESQARTAASLHAEIMDLYR 580
+G +II++A+ ++ ++ + +L + +E+R+LE A+L + +
Sbjct: 491 LGLKEQIIEKAKSFLKE-----EELKLDKLIFDVEQEKRQLEKAKEEVANLLISLKEKEA 545
Query: 581 EIEDEAKDLDRRAAHLKAKETQQVQQELNFAKVQIDTVVQDFENQLRDASADEINXXXXX 640
++ DE ++L++ + K ++ QQ+L + + V+++ + +++ + +E N
Sbjct: 546 KLNDELENLEKTKEEIIRKYREKYQQKLLEIERKGKLVIEEIKEKIK--TYEEKNLAKLL 603
Query: 641 XXXXXXXXXXXHRPDDDFSVSETNTSSFTPQFGEQVHVKSLGDKLATVVEVPGDDDTVLV 700
+F++ + P+ GE V + +G K A V+ V ++ +V
Sbjct: 604 EEARQKTKEFSQ----NFALPFEPIKPYRPKVGETVELVEVGQK-AEVLAV--GENYAIV 656
Query: 701 QYGKMRVRVKKNNIRPIPNSKRKN 724
Q G M++ V + IRP +++N
Sbjct: 657 QAGIMKLNVSFDQIRPAQKQEKEN 680
|
|
| TIGR_CMR|BA_4794 BA_4794 "MutS2 family protein" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 510 (184.6 bits), Expect = 2.1e-65, Sum P(2) = 2.1e-65
Identities = 127/388 (32%), Positives = 204/388 (52%)
Query: 341 VPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILA 400
VP +I + + +VITGPNTGGKT ++KT+G+ LM+++GL++P + + F I A
Sbjct: 318 VPNNIMLGKDFTTIVITGPNTGGKTVTLKTVGICVLMAQSGLHIPVMDESEICVFKNIFA 377
Query: 401 DIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYL 460
DIGD QS+EQ+LSTFS H+ IVDILE ESLVL DE+G+GTDP EG ALA SIL +
Sbjct: 378 DIGDEQSIEQSLSTFSSHMVNIVDILEKADFESLVLFDELGAGTDPQEGAALAISILDEV 437
Query: 461 RDRVGLAVVTTHYADLSCLKDKDTRFENAATEFSLETLRPTYRILWGSTGDSNALNIAKS 520
+R V TTHY +L + NA+ EF + TL PT+++L G G SNA I+K
Sbjct: 438 CNRGARVVATTHYPELKAYGYNREQVINASVEFDVNTLSPTHKLLIGVPGRSNAFEISKR 497
Query: 521 IGFDRKIIQRAQKLVERLRPERQQHRKSELYQSLMEERRKLESQARTAASLHAEIMDLYR 580
+G ++I +A+ + ++ + L E ++ E A +L + L+R
Sbjct: 498 LGLSNRVIDQARNHIST-----DTNKIENMIAKLEESQKNAERDWNEAEALRKQSEKLHR 552
Query: 581 EIEDEAKDLDRRAAHLKAKETQQVQQELNFAKVQIDTVVQDFENQLRDASADEINXXXXX 640
E++ + + + K ++ ++++ AK + + ++Q+ QLR A +
Sbjct: 553 ELQRQIIEFNEERDERLLKAQKEGEEKVEAAKKEAEGIIQELR-QLRKAQLANVKDHELI 611
Query: 641 XXXXXXXXXXXHRPDDDFSVSETNTSSFTP-QFGEQVHVKSLGDKLATVVEVPGDDDTVL 699
V+ NT+ + G++V V + G K ++E D +
Sbjct: 612 EAKSRLEGAAPELVKKQ-KVNVKNTAPKQQLRAGDEVKVLTFGQK-GQLLEKVSDTEWS- 668
Query: 700 VQYGKMRVRVKKNNIRPI--PNSKRKNA 725
VQ G ++++VK++N+ I P K A
Sbjct: 669 VQIGILKMKVKESNMEYINTPKQTEKKA 696
|
|
| UNIPROTKB|Q76DY7 mutS2 "MutS2 protein" [Thermus thermophilus (taxid:274)] | Back alignment and assigned GO terms |
|---|
Score = 473 (171.6 bits), Expect = 5.0e-60, Sum P(3) = 5.0e-60
Identities = 113/282 (40%), Positives = 172/282 (60%)
Query: 350 ETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLE 409
+ R+++I+GPN GGKTA +KTLGLA LM+++GL++ A+ L W D + ADIGD QSL+
Sbjct: 307 KNRILLISGPNMGGKTALLKTLGLAVLMAQSGLFVAAEK-ALLAWPDRVYADIGDEQSLQ 365
Query: 410 QNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVV 469
+NLSTF+GH+ R+ ++LE + SLVLIDE+GSGTDP EG AL+ +IL+ L +R +V
Sbjct: 366 ENLSTFAGHLRRLREMLEEATSHSLVLIDELGSGTDPEEGAALSQAILEALLERGVKGMV 425
Query: 470 TTHYADLSCLKDKDTRFENAATEFSLETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQ 529
TTH + L +NA+ F LE LRPTY ++ G G S AL IA+ + ++++
Sbjct: 426 TTHLSPLKAFAQGREGIQNASMRFDLEALRPTYELVLGVPGRSYALAIARRLALPEEVLK 485
Query: 530 RAQKLVERLRPERQQHRKSELYQSLMEERRKLESQARTAASLHAEIMDLYREI-EDEAKD 588
RA+ L+ PE R L + L ER LE++ +++ L + + E EA+
Sbjct: 486 RAEALL----PEGG--RLEALLERLEAERLALEAERERLRRELSQVERLRKALAEREARF 539
Query: 589 LDRRAAHLKAKETQQVQQELNFAKVQIDTVVQDFENQ-LRDA 629
+ RA LKA E ++V+ EL + ++ + + + RDA
Sbjct: 540 EEERAERLKALE-EEVRAELLKVEAELKALKEKARTEGKRDA 580
|
|
| UNIPROTKB|Q720J7 mutS2 "MutS2 protein" [Listeria monocytogenes serotype 4b str. F2365 (taxid:265669)] | Back alignment and assigned GO terms |
|---|
Score = 482 (174.7 bits), Expect = 4.9e-58, Sum P(2) = 4.9e-58
Identities = 124/382 (32%), Positives = 204/382 (53%)
Query: 344 DIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIG 403
DI + + +VITGPNTGGKT ++KTLGL +LM+++GL +PA+ + F+ + ADIG
Sbjct: 321 DIYLGEDFTTIVITGPNTGGKTITLKTLGLLTLMAQSGLQIPAQEDSTIAVFEHVFADIG 380
Query: 404 DHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDR 463
D QS+EQ+LSTFS H++ IV IL V+++SL+L DE+G+GTDP EG ALA +IL +
Sbjct: 381 DEQSIEQSLSTFSSHMTNIVSILGNVNQKSLILYDELGAGTDPQEGAALAIAILDASHAK 440
Query: 464 VGLAVVTTHYADLSCLKDKDTRFENAATEFSLETLRPTYRILWGSTGDSNALNIAKSIGF 523
V TTHY +L NA+ EF++ETL PTY++L G G SNA +I++ +G
Sbjct: 441 GASVVATTHYPELKAYGYNRVHATNASVEFNVETLSPTYKLLIGVPGRSNAFDISRRLGL 500
Query: 524 DRKIIQRAQKLVERLRPERQQHRKSELYQSLMEERRKLESQARTAASLHAEIMDLYREIE 583
II A+ LV+ + +++ SL E+R E++ A L +L ++++
Sbjct: 501 SENIITEARSLVDT-----ESADLNDMISSLEEKRNLAETEYEEARELARGAGNLLKDLQ 555
Query: 584 DEAKDLDRRAAHLKAKETQQVQQELNFAKVQIDTVVQDFEN-QLRDASA-DEINXXXXXX 641
E + ++ L + +++ + A+ + + ++ + QL A+ E
Sbjct: 556 KEISNYYQQKDKLIEQASEKAATIVEKAEAEAEEIIHELRTMQLNGAAGIKEHELIDAKT 615
Query: 642 XXXXXXXXXXHRPDDDFSVSETNTSSFTPQFGEQVHVKSLGDKLATVVEVPGDDDTVLVQ 701
++ + + F Q G+ V V SLG K T++ D + VQ
Sbjct: 616 RLGNAKPKTINKTIPQAPKQKPHV--F--QEGDNVRVLSLGQK-GTLLNKISDKEWN-VQ 669
Query: 702 YGKMRVRVKKNNIRPIPNSKRK 723
G +++++K ++ I K K
Sbjct: 670 IGIIKMKIKTVDLEYIQPEKPK 691
|
|
| UNIPROTKB|Q81YJ6 BAS3289 "Putative MutS family protein" [Bacillus anthracis (taxid:1392)] | Back alignment and assigned GO terms |
|---|
Score = 400 (145.9 bits), Expect = 2.8e-54, Sum P(2) = 2.8e-54
Identities = 79/221 (35%), Positives = 137/221 (61%)
Query: 341 VPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILA 400
VP++ ++ R ++ITGPN GGKT +KT+GL +L + +GL++ + F+ +
Sbjct: 313 VPLNFEIGQNYRSLIITGPNAGGKTIVLKTIGLLTLATMSGLHIAGDKETEIAIFENVFV 372
Query: 401 DIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYL 460
DIGD+QS+E LSTFS H+ + +I+ + + +L+L DEIGSGT+P+EG ALA SIL+
Sbjct: 373 DIGDNQSIENALSTFSSHMKNLSEIMRMSNNNTLLLFDEIGSGTEPNEGAALAISILEEF 432
Query: 461 RDRVGLAVVTTHYADLSCLKDKDTRFENAATEFSLETLRPTYRILWGSTGDSNALNIAKS 520
+ V +THY ++ + F NAA +F+ ETL P Y+++ G +G+SNAL IA
Sbjct: 433 YLAGCITVASTHYGEIKRFSEMHDDFMNAAMQFNSETLEPLYKLVIGKSGESNALWIANK 492
Query: 521 IGFDRKIIQRAQKLVERLRPERQQHRKSELYQ-SLMEERRK 560
+ ++++RA+ + ++ +S++ + ++E+R+
Sbjct: 493 MNVRERVLKRAKAYMGNKEYTLEKVNESKIRKPKFLQEKRE 533
|
|
| TIGR_CMR|BA_3547 BA_3547 "MutS family protein, putative" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 400 (145.9 bits), Expect = 2.8e-54, Sum P(2) = 2.8e-54
Identities = 79/221 (35%), Positives = 137/221 (61%)
Query: 341 VPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILA 400
VP++ ++ R ++ITGPN GGKT +KT+GL +L + +GL++ + F+ +
Sbjct: 313 VPLNFEIGQNYRSLIITGPNAGGKTIVLKTIGLLTLATMSGLHIAGDKETEIAIFENVFV 372
Query: 401 DIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYL 460
DIGD+QS+E LSTFS H+ + +I+ + + +L+L DEIGSGT+P+EG ALA SIL+
Sbjct: 373 DIGDNQSIENALSTFSSHMKNLSEIMRMSNNNTLLLFDEIGSGTEPNEGAALAISILEEF 432
Query: 461 RDRVGLAVVTTHYADLSCLKDKDTRFENAATEFSLETLRPTYRILWGSTGDSNALNIAKS 520
+ V +THY ++ + F NAA +F+ ETL P Y+++ G +G+SNAL IA
Sbjct: 433 YLAGCITVASTHYGEIKRFSEMHDDFMNAAMQFNSETLEPLYKLVIGKSGESNALWIANK 492
Query: 521 IGFDRKIIQRAQKLVERLRPERQQHRKSELYQ-SLMEERRK 560
+ ++++RA+ + ++ +S++ + ++E+R+
Sbjct: 493 MNVRERVLKRAKAYMGNKEYTLEKVNESKIRKPKFLQEKRE 533
|
|
| TIGR_CMR|GSU_0547 GSU_0547 "MutS2 family protein" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 456 (165.6 bits), Expect = 4.0e-51, Sum P(2) = 4.0e-51
Identities = 110/340 (32%), Positives = 176/340 (51%)
Query: 352 RVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQN 411
+V+VITGPN GGKT S+KT GL LM+ AG+ +PA + P +L DIGD QS+EQ+
Sbjct: 342 QVMVITGPNAGGKTISLKTTGLLHLMALAGIPVPAASTSSFPLISDLLVDIGDEQSIEQS 401
Query: 412 LSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTT 471
LSTFS H+S I ILE R ++VL+DE+G+GT+P +G A++ ++L L+D+ L + TT
Sbjct: 402 LSTFSAHVSNIAGILERADRRTVVLLDELGTGTEPVQGAAISCAVLADLQDKGALVIATT 461
Query: 472 HYADLSCLKDKDTRFENAATEFSLETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRA 531
H D+ K NA+ EF +TL P YR+ G G S+AL IA+ G +++ A
Sbjct: 462 HLTDIVGFVHKRDGMVNASMEFDRQTLTPLYRLTVGEPGQSHALEIARRYGLPDRVVAVA 521
Query: 532 QKLVERLRPERQQHRKSELYQSLMEERRKLESQARTAASLHAEIMDLYREIEDEAKDLDR 591
++ R+ E + H EL L ++RR+ E A L + + R + + +
Sbjct: 522 TGMLSRM--ETEFH---ELLAELKDQRRRHEEALAEAERLRRDAEEKARIARERLAEAET 576
Query: 592 RAAHLKAKETQQVQQELNFAKVQIDTVVQDFENQLRDASADEINXXXXXXXXXXXXXXXX 651
R K Q+ ++ + A+ ++ ++++ R+ S +
Sbjct: 577 RRREATEKALQEAKEIVRAARRDVNAIIEEAR---REKSREARKKIDEAEAAVEAKLQEF 633
Query: 652 HRPDDDFSVSETNTSSFTPQFGEQVHVKSLG-DKLATVVE 690
H P++ S+ G+ V VK++G D T V+
Sbjct: 634 H-PEETLSLDAVRE-------GDTVFVKAIGHDGTVTAVD 665
|
|
| UNIPROTKB|A8HMH7 CHLREDRAFT_146712 "Predicted protein" [Chlamydomonas reinhardtii (taxid:3055)] | Back alignment and assigned GO terms |
|---|
Score = 411 (149.7 bits), Expect = 3.0e-47, Sum P(3) = 3.0e-47
Identities = 104/274 (37%), Positives = 152/274 (55%)
Query: 362 GGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISR 421
G + + + LGLA+ M+KAGL LPA+ RLP F +LADIGD QSL NLSTFSGH+ R
Sbjct: 398 GEEPVTPQALGLAACMAKAGLPLPAEAPARLPAFSAVLADIGDEQSLTANLSTFSGHLRR 457
Query: 422 IVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYL-RDRVG---LAVVTTHYADLS 477
I + ++L+L+DE+G+GTDP EG AL ++L+ L VG L V TTH++ ++
Sbjct: 458 IQTLRGEADGKALLLLDELGTGTDPLEGAALGLALLKRLVNGGVGAGALTVATTHHSIMT 517
Query: 478 CLKDKDTRFENAATEFSLETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVER 537
LK D RFENA+ EF L PTY++LWG G SNALNIA +G D +++ A R
Sbjct: 518 GLKFDDPRFENASVEFDEAALAPTYKLLWGIPGRSNALNIASRLGLDEEVVSAA-----R 572
Query: 538 LRPERQQHRKSELYQSLMEERRKLESQARTAASLHAEIMDLYREIEDEAKDLDRRAAHLK 597
R + + + L R +LE++ R + E+ L R +E + + +
Sbjct: 573 GRLDGGVADVNAAIEGLEALRGQLEAEERDSWLAAQEVKTLRRRLEVLGNKVQQLQETMS 632
Query: 598 AKETQQVQQELNFAKVQIDTVVQDFENQLRDASA 631
+ + Q A+ +I + Q+ + R A A
Sbjct: 633 RARAEALLQVYALARDRIKVIKQNRKKLGRAAPA 666
|
|
| UNIPROTKB|O66652 mutS "DNA mismatch repair protein MutS" [Aquifex aeolicus VF5 (taxid:224324)] | Back alignment and assigned GO terms |
|---|
Score = 293 (108.2 bits), Expect = 8.4e-22, Sum P(2) = 8.4e-22
Identities = 68/246 (27%), Positives = 139/246 (56%)
Query: 341 VPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILA 400
VP D K++ ++ + VITGPN GK++ ++ +G+ +L+S G ++PA+ ++P D +
Sbjct: 590 VPNDTKLDRDSFIHVITGPNMAGKSSYIRQVGVLTLLSHIGSFIPARR-AKIPVVDALFT 648
Query: 401 DIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYL 460
IG L +STF + + +IL + +SLV++DE+G GT +G+A++ +I++Y+
Sbjct: 649 RIGSGDVLALGVSTFMNEMLEVSNILNNATEKSLVILDEVGRGTSTYDGIAISKAIVKYI 708
Query: 461 RDRV-GLAVVTTHYADLSCLKDKDTRFEN--AATEFSLETLRPTYRILWGSTGDSNALNI 517
+++ ++ TH+ +++ L+ K +N E + E +R Y + G S + +
Sbjct: 709 SEKLKAKTLLATHFLEITELEGKIEGVKNYHMEVEKTPEGIRFLYILKEGKAEGSFGIEV 768
Query: 518 AKSIGFDRKIIQRAQKLVERLRPERQQHRKSELYQSLMEERRKLESQARTAASLHAEIMD 577
AK G ++++ A+K++ L E ++++K ++ L+EE K +A+ + EI+
Sbjct: 769 AKLAGLPEEVVEEARKILREL--EEKENKKEDIVP-LLEETFKKSEEAQRLEE-YEEIIK 824
Query: 578 LYREIE 583
EI+
Sbjct: 825 KIEEID 830
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q8EPI1 | MUTS2_OCEIH | No assigned EC number | 0.3021 | 0.8490 | 0.8056 | yes | no |
| A5D0W6 | MUTS2_PELTS | No assigned EC number | 0.3197 | 0.8544 | 0.8076 | yes | no |
| B8I1Z8 | MUTS2_CLOCE | No assigned EC number | 0.3013 | 0.8571 | 0.8030 | yes | no |
| A5N245 | MUTS2_CLOK5 | No assigned EC number | 0.3098 | 0.8584 | 0.8104 | yes | no |
| B9E5U7 | MUTS2_CLOK1 | No assigned EC number | 0.3098 | 0.8584 | 0.8104 | yes | no |
| Q67QE3 | MUTS2_SYMTH | No assigned EC number | 0.3098 | 0.8760 | 0.8196 | yes | no |
| A0PZP4 | MUTS2_CLONN | No assigned EC number | 0.3186 | 0.8598 | 0.8127 | yes | no |
| Q65GE2 | MUTS2_BACLD | No assigned EC number | 0.3067 | 0.8706 | 0.8229 | yes | no |
| Q97GM6 | MUTS2_CLOAB | No assigned EC number | 0.3061 | 0.8787 | 0.8274 | yes | no |
| A4IRL1 | MUTS2_GEOTN | No assigned EC number | 0.3040 | 0.8638 | 0.8176 | yes | no |
| C0Z9F1 | MUTS2_BREBN | No assigned EC number | 0.3012 | 0.8840 | 0.8356 | yes | no |
| A3DE67 | MUTS2_CLOTH | No assigned EC number | 0.3076 | 0.8665 | 0.8108 | yes | no |
| C4Z417 | MUTS2_EUBE2 | No assigned EC number | 0.3043 | 0.8530 | 0.8043 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 742 | |||
| PRK00409 | 782 | PRK00409, PRK00409, recombination and DNA strand e | 1e-156 | |
| TIGR01069 | 771 | TIGR01069, mutS2, MutS2 family protein | 1e-113 | |
| COG1193 | 753 | COG1193, COG1193, Mismatch repair ATPase (MutS fam | 1e-101 | |
| cd03280 | 200 | cd03280, ABC_MutS2, ATP-binding cassette domain of | 2e-93 | |
| smart00534 | 185 | smart00534, MUTSac, ATPase domain of DNA mismatch | 8e-59 | |
| cd03243 | 202 | cd03243, ABC_MutS_homologs, ATP-binding cassette d | 2e-47 | |
| COG0249 | 843 | COG0249, MutS, Mismatch repair ATPase (MutS family | 1e-43 | |
| cd03284 | 216 | cd03284, ABC_MutS1, ATP-binding cassette domain of | 1e-30 | |
| pfam00488 | 235 | pfam00488, MutS_V, MutS domain V | 7e-30 | |
| TIGR01070 | 840 | TIGR01070, mutS1, DNA mismatch repair protein MutS | 3e-27 | |
| cd03287 | 222 | cd03287, ABC_MSH3_euk, ATP-binding cassette domain | 1e-26 | |
| cd03285 | 222 | cd03285, ABC_MSH2_euk, ATP-binding cassette domain | 7e-26 | |
| cd03282 | 204 | cd03282, ABC_MSH4_euk, ATP-binding cassette domain | 5e-25 | |
| cd03286 | 218 | cd03286, ABC_MSH6_euk, ATP-binding cassette domain | 9e-25 | |
| cd03281 | 213 | cd03281, ABC_MSH5_euk, ATP-binding cassette domain | 9e-23 | |
| cd03283 | 199 | cd03283, ABC_MutS-like, ATP-binding cassette domai | 4e-18 | |
| PRK05399 | 854 | PRK05399, PRK05399, DNA mismatch repair protein Mu | 5e-14 | |
| pfam05192 | 290 | pfam05192, MutS_III, MutS domain III | 3e-13 | |
| smart00533 | 308 | smart00533, MUTSd, DNA-binding domain of DNA misma | 2e-12 | |
| cd03227 | 162 | cd03227, ABC_Class2, ATP-binding cassette domain o | 5e-11 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 5e-08 | |
| pfam03938 | 157 | pfam03938, OmpH, Outer membrane protein (OmpH-like | 1e-05 | |
| smart00935 | 140 | smart00935, OmpH, Outer membrane protein (OmpH-lik | 2e-04 |
| >gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed | Back alignment and domain information |
|---|
Score = 472 bits (1217), Expect = e-156
Identities = 243/721 (33%), Positives = 363/721 (50%), Gaps = 70/721 (9%)
Query: 16 SLEESQKLLNQTSAALAMMQSQP-LDLSTIEDIAGILNSAVSGQLLSPSEICAVRRTLRA 74
EE ++LL +T A +++ + ++DI L A G +LS E+ + +TLR
Sbjct: 39 DFEEVEELLEETDEAAKLLRLKGLPPFEGVKDIDDALKRAEKGGVLSGDELLEIAKTLRY 98
Query: 75 VNNVWKKLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEKIGFCIDCKLLIILDRASED 134
+ K+ E E + + L E + L ELE++I CID + + D ASE
Sbjct: 99 FRQL-KRFIEDLEEEEE----LPILEEWVAKIRTLPELEQEIHNCIDEEGEV-KDSASEK 152
Query: 135 LELIRAERKRNMENLDSLLKKVAAQIFQAGGIDKPLITKRRSRMCVGIKASHKYLLPDGI 194
L IR + +R + L+ + + +IT R R + +KA +K+ + GI
Sbjct: 153 LRGIRRQLRRKKSRIREKLESIIRSKSLQKYLQDTIITIRNDRYVLPVKAEYKHAIK-GI 211
Query: 195 ALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEETAILSLLTAEIAKSEREIKYLMDR 254
+ SSSGAT ++EP+ VE NN L N E E IL L+A++AK+ +K+L
Sbjct: 212 VHDQSSSGATLYIEPQSVVELNNEIRELRNKEEQEIERILKELSAKVAKNLDFLKFLNKI 271
Query: 255 VLEIDLAFARAGFAQWMDGVCPILSSQSHVSFDSSINIEGIKHPLLLGSSLRSLSAASSN 314
E+D FARA +A+ + P+ + + I++ +HPLL G +
Sbjct: 272 FDELDFIFARARYAKALKATFPLFNDEGK------IDLRQARHPLLDGEKV--------- 316
Query: 315 SNPLKSDVENSEMTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTLGLA 374
VP DI + + V+VITGPNTGGKT ++KTLGLA
Sbjct: 317 --------------------------VPKDISLGFDKTVLVITGPNTGGKTVTLKTLGLA 350
Query: 375 SLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESL 434
+LM+K+GL +PA +P F I ADIGD QS+EQ+LSTFSGH++ IV ILE + SL
Sbjct: 351 ALMAKSGLPIPANEPSEIPVFKEIFADIGDEQSIEQSLSTFSGHMTNIVRILEKADKNSL 410
Query: 435 VLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494
VL DE+G+GTDP EG ALA SIL+YLR R + TTHY +L L ENA+ EF
Sbjct: 411 VLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKELKALMYNREGVENASVEFD 470
Query: 495 LETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLV----ERLRPERQQHRKSEL 550
ETLRPTYR+L G G SNA IAK +G II+ A+KL+ E+L +EL
Sbjct: 471 EETLRPTYRLLIGIPGKSNAFEIAKRLGLPENIIEEAKKLIGEDKEKL---------NEL 521
Query: 551 YQSLMEERRKLESQARTAASLHAEIMDLYREIEDEAKDLDRRAAHLKAKETQQVQQELNF 610
SL E R+LE +A A +L E L E+E++ + L L + ++ QQ +
Sbjct: 522 IASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKE 581
Query: 611 AKVQIDTVVQDFENQLRDASADEINSLIKESESAIAAIVEAHRP-DDDFSVSETNTSSFT 669
AK + D ++++ QL+ + + E A + +A+ + +
Sbjct: 582 AKKEADEIIKELR-QLQKGGYASVKA--HELIEARKRLNKANEKKEKKKKKQKEKQEELK 638
Query: 670 PQFGEQVHVKSLGDKLATVVEVPGDDDTVLVQYGKMRVRVKKNNIRPIPNSKRKNAANPA 729
G++V SLG K V+ +P D + +VQ G M+++V +++ I K+K P
Sbjct: 639 V--GDEVKYLSLGQK-GEVLSIPDDKE-AIVQAGIMKMKVPLSDLEKIQKPKKKKKKKPK 694
Query: 730 P 730
Sbjct: 695 T 695
|
Length = 782 |
| >gnl|CDD|130141 TIGR01069, mutS2, MutS2 family protein | Back alignment and domain information |
|---|
Score = 361 bits (927), Expect = e-113
Identities = 214/730 (29%), Positives = 343/730 (46%), Gaps = 84/730 (11%)
Query: 15 KSLEESQKLLNQTSAALAMMQSQPLDLSTIEDIAGILNSAVSGQLLSPSEICAVRRTLRA 74
KS+EES++++ + +A ++ + EDI +L A G ++ E +
Sbjct: 38 KSVEESKEIIIKLTALGSIENNVRF--FGFEDIRELLKRAELGGIVKGLE------YILV 89
Query: 75 VNNVWKKLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEKIGFCIDCKLLIILDRASED 134
+ N K + L L L N L LE I CID + D ASE+
Sbjct: 90 IQNALKTVKHLKVLSEHV-LDLEILFHLRLNLITLPPLENDIIACIDDDGKV-KDGASEE 147
Query: 135 LELIRAERKRNMENLDSLLKKVAAQIFQAGGIDKPLITKRRSRMCVGIKASHKYLLPDGI 194
L+ IR K E + L K+ A + ++T R R + +K+ K + GI
Sbjct: 148 LDAIRESLKALEEEVVKRLHKIIRSKELAKYLSDTIVTIRNGRYVLPLKSGFKGKIK-GI 206
Query: 195 ALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEETAILSLLTAEIAKSEREIKYLMDR 254
+ SSSG T+++EP+ V+ NN +L N E E IL L+ ++ + E+K+L
Sbjct: 207 VHDTSSSGETFYIEPQAIVKLNNKLAQLKNEEECEIEKILRTLSEKVQEYLLELKFLFKE 266
Query: 255 VLEIDLAFARAGFAQWMDGVCPILSSQSHVSFDSSINIEGIKHPLLLGSSLRSLSAASSN 314
+D ARA +A+ + G P+ S F I +E +HPLL +
Sbjct: 267 FDFLDSLQARARYAKAVKGEFPMPS------FTGKIILENARHPLLKEPKV--------- 311
Query: 315 SNPLKSDVENSEMTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTLGLA 374
VP + ++ E RV+ ITGPNTGGKT ++KTLGL
Sbjct: 312 --------------------------VPFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLL 345
Query: 375 SLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESL 434
+LM ++G+ +PA H +P+F+ I ADIGD QS+EQNLSTFSGH+ I IL + SL
Sbjct: 346 ALMFQSGIPIPANEHSEIPYFEEIFADIGDEQSIEQNLSTFSGHMKNISAILSKTTENSL 405
Query: 435 VLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494
VL DE+G+GTDP EG ALA SIL+YL + ++TTHY +L L + ENA+ F
Sbjct: 406 VLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKELKALMYNNEGVENASVLFD 465
Query: 495 LETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVERLRPERQQHRKSELYQSL 554
ETL PTY++L G G+S A IA+ G II++A+ + + L + L
Sbjct: 466 EETLSPTYKLLKGIPGESYAFEIAQRYGIPHFIIEQAKTFY-----GEFKEEINVLIEKL 520
Query: 555 MEERRKLESQARTAASLHAEIMDLYREIEDEAKDLDRRAAHLKAKETQQVQQELNFAKVQ 614
++LE + L E L +E+E E ++L R + K + ++ Q+ L K +
Sbjct: 521 SALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERNKKLELEKEAQEALKALKKE 580
Query: 615 IDTVVQDF----ENQLRDASADEINSLIKESESAIAAIVEAHRPDDDFSVSETNTSSFTP 670
+++++++ ++ ++ + E +KE++ I + D
Sbjct: 581 VESIIRELKEKKIHKAKEIKSIEDLVKLKETKQKIPQKPTNFQAD--------------- 625
Query: 671 QFGEQVHVKSLGDKLATVVEVPGDDDTVLVQYGKMRVRVKKNNIRPI---PNSKRKN--- 724
+ G++V ++ G K +V++ G + V G MR++V + + I P K+
Sbjct: 626 KIGDKVRIRYFGQK-GKIVQILG-GNKWNVTVGGMRMKVHGSELEKINKAPPPKKFKVPK 683
Query: 725 AANPAPRLRK 734
P P+
Sbjct: 684 TTKPEPKEAS 693
|
Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function [DNA metabolism, Other]. Length = 771 |
| >gnl|CDD|224114 COG1193, COG1193, Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 326 bits (839), Expect = e-101
Identities = 214/706 (30%), Positives = 325/706 (46%), Gaps = 100/706 (14%)
Query: 15 KSLEESQKLLNQTSAALAMMQSQPL-DLSTIEDIAGILNSAVSGQLLSPSEICAVRRTLR 73
LE ++ L++T+ AL +++ + L L + D++ L G L E+ + LR
Sbjct: 36 TDLELIEEELSETAEALDILEDEGLPPLGGLNDVSEALGRLEKGGRLHVEELLEISDFLR 95
Query: 74 AVNNVWKKLTEAAELDGDSLQRYSPLLELLK-----NCNFLTELEEKIGFCIDCKLLIIL 128
+L+R LE +K L++LE +I ID LI
Sbjct: 96 GF---------------RALKRAIKKLERIKRTLALALIELSDLELEINIPIDDDGLI-K 139
Query: 129 DRASEDLELIRAE----RKRNMENLDSLLKKVAAQIFQAGGIDKPLITKRRSRMCVGIKA 184
DRAS +L+ IR + + + L+SL++ A+ Q ++T R R + +KA
Sbjct: 140 DRASFELDAIRRQLRDLEEEIRDKLESLIRSKEAKYLQ-----DRIVTTRDGREVLPVKA 194
Query: 185 SHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEETAILSLLTAEIAKS 244
K + GI + SSSGAT ++EP+ V+ NN L E EE IL L+A +A
Sbjct: 195 EFKGAIK-GIVHDTSSSGATLYIEPRSVVKLNNELRALLVEEDEEEERILRELSALVAPV 253
Query: 245 EREIKYLMDRVLEIDLAFARAGFAQWMDGVCPILSSQSHVSFDSSINIEGIKHPLLLGSS 304
E++ L++ + E+D A+ +A+ + GV P S+ D + + +HPLL
Sbjct: 254 IPELEILLEIIGELDFIEAKVRYAKALKGVKPDFSN------DGVLELLDARHPLL---- 303
Query: 305 LRSLSAASSNSNPLKSDVENSEMTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGK 364
VP D+++ E ++ITGPNTGGK
Sbjct: 304 ---------------------------------KEDVPNDLELGEELDRLIITGPNTGGK 330
Query: 365 TASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVD 424
T ++KTLGL LM+++GL +PA LP F I ADIGD QS+EQ+LSTFS H++ IV+
Sbjct: 331 TVTLKTLGLLRLMAQSGLPIPALEGSELPVFVKIFADIGDEQSIEQSLSTFSSHMTNIVE 390
Query: 425 ILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDT 484
ILE +SLVL DE+GSGTDP EG ALA +IL+ L ++ V TTHY +L L +
Sbjct: 391 ILEKA--DSLVLFDELGSGTDPDEGAALAIAILEDLLEKPAKIVATTHYRELKALAAERE 448
Query: 485 RFENAATEFSLETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVERLRPERQQ 544
ENA+ EF ETLRPTYR+L G G SNA +IA +G II+ A+ ++
Sbjct: 449 GVENASMEFDAETLRPTYRLLEGVPGRSNAFDIALRLGLPEPIIEEAKTEF-----GEEK 503
Query: 545 HRKSELYQSLMEERRKLESQARTAASLHAEIMDLYREIEDEAKDLDRRAAHLKAKETQQV 604
EL + L E R++LE + L E+ L L A + +
Sbjct: 504 ELLEELIEKLEEVRKELEEELEEVEKLLDEVELLTGANSGGKTSLLELKAQIVVLAHMGL 563
Query: 605 QQELNFAKVQIDTVVQDFENQLRDASADEINSLIKESESAIAAIVEAHRPDDDFSVSETN 664
AKV+ V+ + + A S +K+ ++ + E
Sbjct: 564 PVPAEEAKVEAVDEVKFLKKKKGILDAGAFESTLKDKKNKVL--------------PEAK 609
Query: 665 TSSFTPQFGEQVHVKSLGDKLATVVEVPGDDDTVLVQYGKMRVRVK 710
G+ V+ + + VV++ LVQ G ++V V
Sbjct: 610 KRKLKL--GD--EVEVITGEPGAVVKIIAGILEALVQSGILKVIVS 651
|
Length = 753 |
| >gnl|CDD|213247 cd03280, ABC_MutS2, ATP-binding cassette domain of MutS2 | Back alignment and domain information |
|---|
Score = 289 bits (741), Expect = 2e-93
Identities = 99/184 (53%), Positives = 128/184 (69%)
Query: 340 PVPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLIL 399
VP+DI++ RV+VITGPN GGKT ++KTLGL +LM+++GL +PA LP F+ I
Sbjct: 17 VVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGSSLPVFENIF 76
Query: 400 ADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQY 459
ADIGD QS+EQ+LSTFS H+ I IL+ +SLVL+DE+GSGTDP EG ALA +IL+
Sbjct: 77 ADIGDEQSIEQSLSTFSSHMKNIARILQHADPDSLVLLDELGSGTDPVEGAALAIAILEE 136
Query: 460 LRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFSLETLRPTYRILWGSTGDSNALNIAK 519
L +R L + TTHY +L K ENA+ EF ETL+PTYR+L G G SNAL IA+
Sbjct: 137 LLERGALVIATTHYGELKAYAYKREGVENASMEFDPETLKPTYRLLIGVPGRSNALEIAR 196
Query: 520 SIGF 523
+G
Sbjct: 197 RLGL 200
|
MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA structures or lesions results in ADP/ATP exchange. Length = 200 |
| >gnl|CDD|197777 smart00534, MUTSac, ATPase domain of DNA mismatch repair MUTS family | Back alignment and domain information |
|---|
Score = 197 bits (502), Expect = 8e-59
Identities = 67/184 (36%), Positives = 108/184 (58%), Gaps = 4/184 (2%)
Query: 353 VVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNL 412
VV+ITGPN GGK+ ++ + L +M++ G ++PA++ LP FD I IG SL Q L
Sbjct: 1 VVIITGPNMGGKSTYLRQVALIVIMAQIGSFVPAES-AELPVFDRIFTRIGASDSLAQGL 59
Query: 413 STFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVG-LAVVTT 471
STF + +IL+ ++ SLVL+DE+G GT +G+A+A +IL+YL +++G + T
Sbjct: 60 STFMVEMKETANILKNATKNSLVLLDELGRGTSTYDGLAIAAAILEYLLEKIGARTLFAT 119
Query: 472 HYADLSCLKDKDTRFENAATEFSLET--LRPTYRILWGSTGDSNALNIAKSIGFDRKIIQ 529
HY +L+ L D N ET + Y++ G G S + +AK G +++I+
Sbjct: 120 HYHELTKLADNHPGVRNLHMSALEETENITFLYKLKPGVAGKSYGIEVAKLAGLPKEVIE 179
Query: 530 RAQK 533
RA++
Sbjct: 180 RAKR 183
|
Length = 185 |
| >gnl|CDD|213210 cd03243, ABC_MutS_homologs, ATP-binding cassette domain of MutS homologs | Back alignment and domain information |
|---|
Score = 166 bits (422), Expect = 2e-47
Identities = 64/186 (34%), Positives = 107/186 (57%), Gaps = 4/186 (2%)
Query: 340 PVPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLIL 399
VP DI + R+++ITGPN GGK+ ++++GLA L+++ G ++PA+ +P D I
Sbjct: 19 FVPNDINLG-SGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVPAE-SASIPLVDRIF 76
Query: 400 ADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQY 459
IG S+ STF + + +IL L + SLVLIDE+G GT +EG+A+A ++L++
Sbjct: 77 TRIGAEDSISDGRSTFMAELLELKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEH 136
Query: 460 LRDRVGLAVVTTHYADLSCLKDKDTRFENAATEF--SLETLRPTYRILWGSTGDSNALNI 517
L ++ + TH+ +L+ L ++ +N E + L TY+++ G S AL I
Sbjct: 137 LLEKGCRTLFATHFHELADLPEQVPGVKNLHMEELITTGGLTFTYKLIDGICDPSYALQI 196
Query: 518 AKSIGF 523
A+ G
Sbjct: 197 AELAGL 202
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA structures or lesions results in ADP/ATP exchange. Length = 202 |
| >gnl|CDD|223327 COG0249, MutS, Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 169 bits (430), Expect = 1e-43
Identities = 125/552 (22%), Positives = 241/552 (43%), Gaps = 76/552 (13%)
Query: 41 LSTIEDIAGILNSAVSGQLLSPSEICAVRRTLRAVNNVWKKLTEAAELDGDSLQRYSPLL 100
L + D+ +L+ G SP ++ +R +L + ++K L+ S LL
Sbjct: 339 LKKVPDLERLLSRLSLG-RASPRDLLRLRDSLEKIPEIFKLLSSL-----KSESDLLLLL 392
Query: 101 ELLKNCNFLTELEEKIGFCIDCKL------LIILDRASEDLELIRAERKRNMENLDSLLK 154
E +++ ++L EL E + I+ II + + +L+ +R N +
Sbjct: 393 EDIESLDYLAELLELLETAINEDPPLAVRDGIIKEGYNIELDELRDLL----NNAKEWIA 448
Query: 155 KVAAQIFQAGGIDKPLITKRRSRM--CVGIKASHKYLLPDGIALNVSSSGATYFMEPKGA 212
K+ + + GI L K + + S+ L+PD + A F P
Sbjct: 449 KLELEERERTGIKS-LKIKYNKVYGYYIEVTKSNAKLVPDDYIRRQTLKNAERFTTP--- 504
Query: 213 VEFNNMEVRLSNSE---IAEETAILSLLTAEIAKSEREIKYLMDRVLEIDLAFARAGFAQ 269
E +E +L ++E +A E + L +I E++ L + E+D+ + A A
Sbjct: 505 -ELKELEEKLLDAEEKILALEYELFDELREKILAHINELQALAKALAELDVLSSLAEIAA 563
Query: 270 WMDGVCPILSSQSHVSFDSSINIEGIKHPLLLGSSLRSLSAASSNSNPLKSDVENSEMTV 329
+ V P + + I+ +HP+ VE
Sbjct: 564 EQNYVRPEFVD------SNDLEIKEGRHPV----------------------VE------ 589
Query: 330 GSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNH 389
+ + VP DI + R+++ITGPN GGK+ ++ + L ++++ G ++PA+
Sbjct: 590 ----AVLDNGFVPNDIDLSGNRRIILITGPNMGGKSTYLRQVALIVILAQIGSFVPAEK- 644
Query: 390 PRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEG 449
R+ D I IG L STF + +IL+ + SLV++DEIG GT +G
Sbjct: 645 ARIGIVDRIFTRIGAADDLASGRSTFMVEMLETANILDNATERSLVILDEIGRGTSTYDG 704
Query: 450 VALATSILQYLRDRVG-LAVVTTHYADLSCLKDKDTRFEN---AATEFSLETLRPTYRIL 505
+A+A ++L+YL +++G + THY +L+ L++K + +N +A E + Y++
Sbjct: 705 LAIAWAVLEYLHEKIGCRTLFATHYHELTELEEKLPQVKNYHMSAVEEG-GDITFLYKVK 763
Query: 506 WGSTGDSNALNIAKSIGFDRKIIQRAQKLVERL-----RPERQQHRK-SELYQSLMEERR 559
G S +++AK G ++I+RA++++ L + ++K L+ +++ +
Sbjct: 764 PGIADKSYGIHVAKLAGLPEEVIERAREILAELEKESRSSNLELNQKDLSLFPKVLKALK 823
Query: 560 KLESQARTAASL 571
L+ T +L
Sbjct: 824 SLDPDELTPRAL 835
|
Length = 843 |
| >gnl|CDD|213251 cd03284, ABC_MutS1, ATP-binding cassette domain of MutS1 homolog | Back alignment and domain information |
|---|
Score = 119 bits (300), Expect = 1e-30
Identities = 60/198 (30%), Positives = 111/198 (56%), Gaps = 6/198 (3%)
Query: 341 VPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILA 400
VP D +++ E ++++ITGPN GK+ ++ + L +L+++ G ++PA + D I
Sbjct: 20 VPNDTELDPERQILLITGPNMAGKSTYLRQVALIALLAQIGSFVPASK-AEIGVVDRIFT 78
Query: 401 DIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYL 460
IG L STF + +IL + SLVL+DEIG GT +G+++A +I++YL
Sbjct: 79 RIGASDDLAGGRSTFMVEMVETANILNNATERSLVLLDEIGRGTSTYDGLSIAWAIVEYL 138
Query: 461 RDRVG-LAVVTTHYADLSCLKDKDTRFEN---AATEFSLETLRPTYRILWGSTGDSNALN 516
+++G + THY +L+ L+ K R +N A E + ++I+ G+ S +
Sbjct: 139 HEKIGAKTLFATHYHELTELEGKLPRVKNFHVAVKEKG-GGVVFLHKIVEGAADKSYGIE 197
Query: 517 IAKSIGFDRKIIQRAQKL 534
+A+ G ++I+RA+++
Sbjct: 198 VARLAGLPEEVIERAREI 215
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA structures or lesions results in ADP/ATP exchange. Length = 216 |
| >gnl|CDD|215944 pfam00488, MutS_V, MutS domain V | Back alignment and domain information |
|---|
Score = 118 bits (297), Expect = 7e-30
Identities = 56/204 (27%), Positives = 112/204 (54%), Gaps = 5/204 (2%)
Query: 340 PVPIDIKV-ECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLI 398
VP D+ + + +R+++ITGPN GGK+ ++ + L +M++ G ++PA+ R+ D I
Sbjct: 31 FVPNDVSLGKERSRILLITGPNMGGKSTYLRQVALIVIMAQIGSFVPAE-SARIGIVDRI 89
Query: 399 LADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQ 458
IG L STF + +IL + +SLV++DE+G GT +G+A+A ++ +
Sbjct: 90 FTRIGASDDLASGRSTFMVEMLETANILHNATDKSLVILDELGRGTSTYDGLAIAWAVAE 149
Query: 459 YLRDRVG-LAVVTTHYADLSCLKDKDTRFENA--ATEFSLETLRPTYRILWGSTGDSNAL 515
+L +++ + THY +L+ L +K +N A + + Y++ G+ S +
Sbjct: 150 HLAEKIRARTLFATHYHELTKLAEKLPAVKNVHMAAVETNGDIVFLYKVKPGAADKSYGI 209
Query: 516 NIAKSIGFDRKIIQRAQKLVERLR 539
++A+ G +++RA++++ L
Sbjct: 210 HVAELAGLPESVVERAREVLAELE 233
|
This domain is found in proteins of the MutS family (DNA mismatch repair proteins) and is found associated with pfam01624, pfam05188, pfam05192 and pfam05190. The mutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair; other members of the family included the eukaryotic MSH 1,2,3, 4,5 and 6 proteins. These have various roles in DNA repair and recombination. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. The aligned region corresponds with domain V of Thermus aquaticus MutS as characterized in, which contains a Walker A motif, and is structurally similar to the ATPase domain of ABC transporters. Length = 235 |
| >gnl|CDD|233259 TIGR01070, mutS1, DNA mismatch repair protein MutS | Back alignment and domain information |
|---|
Score = 117 bits (296), Expect = 3e-27
Identities = 73/229 (31%), Positives = 123/229 (53%), Gaps = 14/229 (6%)
Query: 341 VPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILA 400
VP D+++ R+++ITGPN GGK+ M+ L +L+++ G ++PA++ LP FD I
Sbjct: 582 VPNDLEMAHNRRMLLITGPNMGGKSTYMRQTALIALLAQIGSFVPAES-AELPLFDRIFT 640
Query: 401 DIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYL 460
IG L STF ++ +IL + SLVL DEIG GT +G+ALA +I +YL
Sbjct: 641 RIGASDDLASGRSTFMVEMTEAANILHNATENSLVLFDEIGRGTSTYDGLALAWAIAEYL 700
Query: 461 RDRVG-LAVVTTHYADLSCLKDKDTRFEN---AATEFSLETLRPTYRILWGSTGDSNALN 516
+ + + THY +L+ L++ +N AA E + T+ +++L G S L
Sbjct: 701 HEHIRAKTLFATHYFELTALEESLPGLKNVHVAALEHN-GTIVFLHQVLPGPASKSYGLA 759
Query: 517 IAKSIGFDRKIIQRAQKLVERLR--------PERQQHRKSELYQSLMEE 557
+A G +++I RA++++ +L P+R+ + SL +E
Sbjct: 760 VAALAGLPKEVIARARQILTQLEARSTESEAPQRKAQTSAPEQISLFDE 808
|
[DNA metabolism, DNA replication, recombination, and repair]. Length = 840 |
| >gnl|CDD|213254 cd03287, ABC_MSH3_euk, ATP-binding cassette domain of eukaryotic MutS3 homolog | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 1e-26
Identities = 65/207 (31%), Positives = 106/207 (51%), Gaps = 20/207 (9%)
Query: 341 VPIDIKVECET-RVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLIL 399
VP DI + E +ITGPN GGK++ ++ + L ++M++ G ++PA + L FD +L
Sbjct: 20 VPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASS-ATLSIFDSVL 78
Query: 400 ADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQY 459
+G S++ +STF +S IL + SLV++DE+G GT +G+A+A + L Y
Sbjct: 79 TRMGASDSIQHGMSTFMVELSETSHILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHY 138
Query: 460 LRDRVG-LAVVTTHYADLSCLKDKDTRFENAATEFS---LETLRP-----------TYRI 504
L + L + THY L + RFE + + LE+ + Y++
Sbjct: 139 LLEEKKCLVLFVTHYPSLGEIL---RRFEGSIRNYHMSYLESQKDFETSDSQSITFLYKL 195
Query: 505 LWGSTGDSNALNIAKSIGFDRKIIQRA 531
+ G S LN+A+ G + II RA
Sbjct: 196 VRGLASRSFGLNVARLAGLPKSIISRA 222
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA structures or lesions results in ADP/ATP exchange. Length = 222 |
| >gnl|CDD|213252 cd03285, ABC_MSH2_euk, ATP-binding cassette domain of eukaryotic MutS2 homolog | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 7e-26
Identities = 61/203 (30%), Positives = 114/203 (56%), Gaps = 8/203 (3%)
Query: 341 VPIDIKVE-CETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLIL 399
+P D+ + ++R ++ITGPN GGK+ ++ +G+ LM++ G ++P + +P D IL
Sbjct: 19 IPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVIVLMAQIGCFVPC-DSADIPIVDCIL 77
Query: 400 ADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQY 459
A +G S + +STF + IL+ + SL++IDE+G GT +G LA +I +Y
Sbjct: 78 ARVGASDSQLKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAWAIAEY 137
Query: 460 LRDRVG-LAVVTTHYADLSCLKDKDTRFEN----AATEFSLETLRPTYRILWGSTGDSNA 514
+ ++ + TH+ +L+ L D+ +N A T+ + TL Y++ G+ S
Sbjct: 138 IATQIKCFCLFATHFHELTALADEVPNVKNLHVTALTDDASRTLTMLYKVEKGACDQSFG 197
Query: 515 LNIAKSIGFDRKIIQRA-QKLVE 536
+++A+ F +++I+ A QK +E
Sbjct: 198 IHVAELANFPKEVIEMAKQKALE 220
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA structures or lesions results in ADP/ATP exchange. Length = 222 |
| >gnl|CDD|213249 cd03282, ABC_MSH4_euk, ATP-binding cassette domain of eukaryotic MutS4 homolog | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 5e-25
Identities = 46/127 (36%), Positives = 79/127 (62%), Gaps = 1/127 (0%)
Query: 350 ETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLE 409
+R +ITGPN GK+ +K + L ++M++ G ++PA+ LP F+ +L+ + + S+E
Sbjct: 28 SSRFHIITGPNMSGKSTYLKQIALLAIMAQIGCFVPAEY-ATLPIFNRLLSRLSNDDSME 86
Query: 410 QNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVV 469
+NLSTF+ +S IL+ +SLVLIDE+G GT ++G A++ +IL+ L +
Sbjct: 87 RNLSTFASEMSETAYILDYADGDSLVLIDELGRGTSSADGFAISLAILECLIKKESTVFF 146
Query: 470 TTHYADL 476
TH+ D+
Sbjct: 147 ATHFRDI 153
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA structures or lesions results in ADP/ATP exchange. Length = 204 |
| >gnl|CDD|213253 cd03286, ABC_MSH6_euk, ATP-binding cassette domain of eukaryotic MutS6 homolog | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 9e-25
Identities = 62/202 (30%), Positives = 105/202 (51%), Gaps = 11/202 (5%)
Query: 340 PVPIDIKV-ECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLI 398
VP D+ + R++V+TGPN GGK+ ++T+ LA +M++ G+ +PAK+ RL D I
Sbjct: 18 FVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQMGMDVPAKSM-RLSLVDRI 76
Query: 399 LADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQ 458
IG + + STF +S +IL + +SLV++DE+G GT +G A+A ++L+
Sbjct: 77 FTRIGARDDIMKGESTFMVELSETANILRHATPDSLVILDELGRGTSTHDGYAIAHAVLE 136
Query: 459 YLRDRVG-LAVVTTHYADL--SCLKDKDTRFENAATEFS------LETLRPTYRILWGST 509
YL +V L + +THY L + R + A + + Y+++ G
Sbjct: 137 YLVKKVKCLTLFSTHYHSLCDEFHEHGGVRLGHMACAVKNESDPTIRDITFLYKLVAGIC 196
Query: 510 GDSNALNIAKSIGFDRKIIQRA 531
S L +A G +++RA
Sbjct: 197 PKSYGLYVALMAGIPDGVVERA 218
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA structures or lesions results in ADP/ATP exchange. Length = 218 |
| >gnl|CDD|213248 cd03281, ABC_MSH5_euk, ATP-binding cassette domain of eukaryotic MutS5 homolog | Back alignment and domain information |
|---|
Score = 96.6 bits (241), Expect = 9e-23
Identities = 54/194 (27%), Positives = 93/194 (47%), Gaps = 17/194 (8%)
Query: 341 VPIDIKV-ECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLIL 399
VP D ++ ++VITGPN+ GK+ +K + L ++ G ++PA + + D I
Sbjct: 18 VPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPA-DSATIGLVDKIF 76
Query: 400 ADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQY 459
+ +S+ S F + ++ L L +R SLVLIDE G GTD +G L + +++
Sbjct: 77 TRMSSRESVSSGQSAFMIDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEH 136
Query: 460 LRDRVGLA---VVTTHYADL---SCLKDK--------DTRFENAATEFSLETLRPTYRIL 505
L R +V+TH+ +L S L ++ + +T E + YR++
Sbjct: 137 LLKRGPECPRVIVSTHFHELFNRSLLPERLKIKFLTMEVLLNPTSTS-PNEDITYLYRLV 195
Query: 506 WGSTGDSNALNIAK 519
G S A++ AK
Sbjct: 196 PGLADTSFAIHCAK 209
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA structures or lesions results in ADP/ATP exchange. Length = 213 |
| >gnl|CDD|213250 cd03283, ABC_MutS-like, ATP-binding cassette domain of MutS-like homolog | Back alignment and domain information |
|---|
Score = 83.1 bits (206), Expect = 4e-18
Identities = 47/181 (25%), Positives = 92/181 (50%), Gaps = 12/181 (6%)
Query: 350 ETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILA-DIGDHQSL 408
+ ++ITG N GK+ ++T+G+ ++++AG + A + LP + + + D L
Sbjct: 24 KKNGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSF-ELPPVKIFTSIRVSD--DL 80
Query: 409 EQNLSTFSGHISRIVDILELVSRE--SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGL 466
+S F + R+ +I+E + L L+DEI GT+ E A + ++L++L+++ +
Sbjct: 81 RDGISYFYAELRRLKEIVEKAKKGEPVLFLLDEIFKGTNSRERQAASAAVLKFLKNKNTI 140
Query: 467 AVVTTHYADLSCLKDKDTRFENAATEFSLETLRPT----YRILWGSTGDSNALNIAKSIG 522
+++TH +L+ L D D+ N F + Y++ G + NAL + K IG
Sbjct: 141 GIISTHDLELADLLDLDSAVRN--YHFREDIDDNKLIFDYKLKPGVSPTRNALRLMKKIG 198
Query: 523 F 523
Sbjct: 199 I 199
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA structures or lesions results in ADP/ATP exchange. Length = 199 |
| >gnl|CDD|235444 PRK05399, PRK05399, DNA mismatch repair protein MutS; Provisional | Back alignment and domain information |
|---|
Score = 75.5 bits (187), Expect = 5e-14
Identities = 68/234 (29%), Positives = 120/234 (51%), Gaps = 48/234 (20%)
Query: 341 VPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILA 400
VP D ++ E R+++ITGPN GK+ M+ + L L+++ G ++PA+ R+ D I
Sbjct: 597 VPNDCDLDEERRLLLITGPNMAGKSTYMRQVALIVLLAQIGSFVPAE-SARIGIVDRIFT 655
Query: 401 DIG--DHQSLEQNL----STFSGHISRIV------DILELVSRESLVLIDEIGSGT---D 445
IG D +L STF +V +IL + SLVL+DEIG GT D
Sbjct: 656 RIGASD------DLASGRSTF------MVEMTETANILNNATERSLVLLDEIGRGTSTYD 703
Query: 446 PSEGVALATSILQYLRDRVG-LAVVTTHYADLSCLKDKDTRFEN---AATE------FSL 495
G+++A ++ +YL D++G + THY +L+ L++K +N A E F
Sbjct: 704 ---GLSIAWAVAEYLHDKIGAKTLFATHYHELTELEEKLPGVKNVHVAVKEHGGDIVF-- 758
Query: 496 ETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVERLRPERQQHRKSE 549
L +++ G+ S +++AK G +I+RA++++ +L ++ + +
Sbjct: 759 --LH---KVVPGAADKSYGIHVAKLAGLPASVIKRAREILAQLESASEKAKAAS 807
|
Length = 854 |
| >gnl|CDD|218489 pfam05192, MutS_III, MutS domain III | Back alignment and domain information |
|---|
Score = 70.5 bits (173), Expect = 3e-13
Identities = 54/255 (21%), Positives = 93/255 (36%), Gaps = 15/255 (5%)
Query: 15 KSLEESQKLLNQTSAALAMMQSQ-PLDLSTIEDIAGILNSAVSGQLLSPSEICAVRRTLR 73
L+E L+ L ++ + L I D+ +L+ G+ SP ++ A+R +L
Sbjct: 46 TDLDEINARLDAVEELLEDLREELREALKGIPDLERLLSRLALGRA-SPRDLLALRSSLE 104
Query: 74 AVNNVWKKLTEAAEL-DGDSLQRYSPLLELLKNC-NFLTELEEKIGFCIDCKLLIILDRA 131
A+ + K L A L D LLELL+ + L + G +I D
Sbjct: 105 ALPALRKLLASAPLLADLADQLPLPELLELLERAIDEDPPLSLRDGG-------VIKDGY 157
Query: 132 SEDLELIRAERKRNMENLDSLLKKVAAQIFQAGGIDKPLITKRRSRMCVGIKASHKYLLP 191
+L+ +RA E L LL++ + + V KAS +P
Sbjct: 158 DPELDELRALLDELREKLAELLERERERTGIKSLKVGYNRVFGYYVIEV--KASKADKVP 215
Query: 192 DGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEETAILSLLTAEIAKSERE-IKY 250
+ S++ E + +A E IL L + E ++
Sbjct: 216 GDY-IRRSTTKNAVRFTTPELKELERKLLEAEERALALEKEILEELLERVLSEYAELLQE 274
Query: 251 LMDRVLEIDLAFARA 265
L D + E+D+ + A
Sbjct: 275 LADAIAELDVLLSLA 289
|
This domain is found in proteins of the MutS family (DNA mismatch repair proteins) and is found associated with pfam00488, pfam05188, pfam01624 and pfam05190. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair; other members of the family included the eukaryotic MSH 1,2,3, 4,5 and 6 proteins. These have various roles in DNA repair and recombination. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. The aligned region corresponds with domain III, which is central to the structure of Thermus aquaticus MutS as characterized in. Length = 290 |
| >gnl|CDD|214710 smart00533, MUTSd, DNA-binding domain of DNA mismatch repair MUTS family | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 2e-12
Identities = 52/270 (19%), Positives = 97/270 (35%), Gaps = 32/270 (11%)
Query: 41 LSTIEDIAGILNSAVSGQLLSPSEICAVRRTLRAVNNVWKKLTE---------AAELDGD 91
L I D+ +L+ + SP ++ + +L + + + L +
Sbjct: 58 LKRIPDLERLLSR-IERGRASPRDLLRLYDSLEGLKEIRQLLESLDGPLLGLLLKVILEP 116
Query: 92 SLQRYSPLLELLKNCNFLTELEEKIGFCIDCKLLIILDRASEDLELIRAERKRNMENLDS 151
L+ LLELL + + LE G +I D +L+ +R + + E L+
Sbjct: 117 LLELLELLLELLNDDD---PLEVNDGG-------LIKDGFDPELDELREKLEELEEELEE 166
Query: 152 LLKKVAAQIFQAGGIDKPLITKRRSR-MCVGIKASHKYLLPDGIALNVSSSGATYFMEPK 210
LLKK ++ GID + + + + S +P S F
Sbjct: 167 LLKKEREEL----GIDSLKLGYNKVHGYYIEVTKSEAKKVPKDFIRRSSLKNTERF-TTP 221
Query: 211 GAVEFNNMEVRLSNSEIAEETAILSLLTAEIAKSEREIKYLMDRVLEIDLAFARAGFAQW 270
E N + E IL L ++ + E++ L + + E+D+ + A A
Sbjct: 222 ELKELENELLEAKEEIERLEKEILRELLEKVLEYLEELRALAEALAELDVLLSLATLAAE 281
Query: 271 MDGVCPILSSQSHVSFDSSINIEGIKHPLL 300
+ V P + I+ +HP+L
Sbjct: 282 GNYVRPEFVD------SGELEIKNGRHPVL 305
|
Length = 308 |
| >gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 5e-11
Identities = 37/137 (27%), Positives = 61/137 (44%), Gaps = 11/137 (8%)
Query: 350 ETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPR----LPWFDLILADIGDH 405
E + +ITGPN GK+ + +GLA +++ + +LI +
Sbjct: 20 EGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCIVAAVSAELIFTRLQ-- 77
Query: 406 QSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVG 465
L S ++ I+ L + L ++DEI G DP +G ALA +IL+ +
Sbjct: 78 --LSGGEKELS-ALALIL-ALASLKPRPLYILDEIDRGLDPRDGQALAEAILE-HLVKGA 132
Query: 466 LAVVTTHYADLSCLKDK 482
+V TH +L+ L DK
Sbjct: 133 QVIVITHLPELAELADK 149
|
ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 5e-08
Identities = 30/138 (21%), Positives = 54/138 (39%), Gaps = 15/138 (10%)
Query: 342 PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRL---PWFDLI 398
+ + ++ +V + GPN GK+ ++ + AGL P + L
Sbjct: 17 NVSLTLK-AGEIVALVGPNGSGKSTLLRAI--------AGLLKPTSGEILIDGKDIAKLP 67
Query: 399 LADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQ 458
L ++ LS G R+ L+ L+L+DE SG DP+ L + +
Sbjct: 68 LEELRRRIGYVPQLSG--GQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRE 125
Query: 459 YLRDRVGLAVVTTHYADL 476
L + ++ TH +L
Sbjct: 126 -LAEEGRTVIIVTHDPEL 142
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|217803 pfam03938, OmpH, Outer membrane protein (OmpH-like) | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 1e-05
Identities = 18/106 (16%), Positives = 47/106 (44%), Gaps = 6/106 (5%)
Query: 547 KSELYQSLMEERRKLESQARTAASLHAEIMDLYREIEDEAKDLDRRAAHLKAKETQQVQQ 606
+S ++ ++ K + + AE+ +E++ E + L ++AA L + + QQ
Sbjct: 29 ESPAGKAAQKQLEKEFKKLQ------AELQKKEKELQKEEQKLQKQAATLSEEARKAKQQ 82
Query: 607 ELNFAKVQIDTVVQDFENQLRDASADEINSLIKESESAIAAIVEAH 652
EL + ++ Q + +L+ + + + + + AI + +
Sbjct: 83 ELQQKQQELQQKQQAAQQELQQKQQELLQPIYDKIDKAIKEVAKEK 128
|
This family includes outer membrane proteins such as OmpH among others. Skp (OmpH) has been characterized as a molecular chaperone that interacts with unfolded proteins as they emerge in the periplasm from the Sec translocation machinery. Length = 157 |
| >gnl|CDD|214922 smart00935, OmpH, Outer membrane protein (OmpH-like) | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 2e-04
Identities = 17/107 (15%), Positives = 45/107 (42%), Gaps = 6/107 (5%)
Query: 546 RKSELYQSLMEERRKLESQARTAASLHAEIMDLYREIEDEAKDLDRRAAHLKAKETQQVQ 605
++S ++ ++ K + + AE+ L +E++ + L + AA L ++ +
Sbjct: 11 QESPAGKAAQKQLEKEFKKRQ------AELEKLEKELQKLKEKLQKDAATLSEAAREKKE 64
Query: 606 QELNFAKVQIDTVVQDFENQLRDASADEINSLIKESESAIAAIVEAH 652
+EL + Q + L+ +E+ ++ + AI + +
Sbjct: 65 KELQKKVQEFQRKQQKLQQDLQKRQQEELQKILDKINKAIKEVAKKK 111
|
This family includes outer membrane proteins such as OmpH among others. Skp (OmpH) has been characterized as a molecular chaperone that interacts with unfolded proteins as they emerge in the periplasm from the Sec translocation machinery. Length = 140 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 742 | |||
| PRK00409 | 782 | recombination and DNA strand exchange inhibitor pr | 100.0 | |
| TIGR01069 | 771 | mutS2 MutS2 family protein. Function of MutS2 is u | 100.0 | |
| COG1193 | 753 | Mismatch repair ATPase (MutS family) [DNA replicat | 100.0 | |
| TIGR01070 | 840 | mutS1 DNA mismatch repair protein MutS. | 100.0 | |
| PRK05399 | 854 | DNA mismatch repair protein MutS; Provisional | 100.0 | |
| COG0249 | 843 | MutS Mismatch repair ATPase (MutS family) [DNA rep | 100.0 | |
| KOG0218 | 1070 | consensus Mismatch repair MSH3 [Replication, recom | 100.0 | |
| KOG0219 | 902 | consensus Mismatch repair ATPase MSH2 (MutS family | 100.0 | |
| KOG0221 | 849 | consensus Mismatch repair ATPase MSH5 (MutS family | 100.0 | |
| KOG0217 | 1125 | consensus Mismatch repair ATPase MSH6 (MutS family | 100.0 | |
| KOG0220 | 867 | consensus Mismatch repair ATPase MSH4 (MutS family | 100.0 | |
| PF00488 | 235 | MutS_V: MutS domain V C-terminus.; InterPro: IPR00 | 100.0 | |
| cd03286 | 218 | ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS | 100.0 | |
| cd03285 | 222 | ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS | 100.0 | |
| cd03280 | 200 | ABC_MutS2 MutS2 homologs in bacteria and eukaryote | 100.0 | |
| cd03287 | 222 | ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS | 100.0 | |
| cd03284 | 216 | ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr | 100.0 | |
| cd03281 | 213 | ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS | 100.0 | |
| cd03282 | 204 | ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS | 100.0 | |
| smart00533 | 308 | MUTSd DNA-binding domain of DNA mismatch repair MU | 100.0 | |
| smart00534 | 185 | MUTSac ATPase domain of DNA mismatch repair MUTS f | 100.0 | |
| cd03243 | 202 | ABC_MutS_homologs The MutS protein initiates DNA m | 100.0 | |
| cd03283 | 199 | ABC_MutS-like MutS-like homolog in eukaryotes. The | 99.97 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 99.96 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 99.96 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 99.96 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 99.96 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 99.95 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 99.95 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 99.94 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 99.94 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 99.94 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 99.94 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 99.94 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 99.94 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 99.94 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 99.94 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 99.94 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 99.94 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 99.94 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 99.94 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 99.94 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 99.94 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 99.94 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 99.94 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 99.94 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 99.94 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 99.94 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 99.94 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 99.94 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 99.94 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 99.93 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 99.93 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 99.93 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 99.93 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 99.93 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 99.93 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 99.93 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 99.93 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 99.93 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 99.93 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 99.93 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 99.93 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 99.93 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 99.93 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 99.93 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 99.93 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 99.93 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 99.93 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 99.93 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 99.93 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 99.93 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 99.93 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 99.93 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.93 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 99.93 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 99.93 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 99.93 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 99.93 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 99.93 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 99.93 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 99.93 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 99.93 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 99.93 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 99.93 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 99.93 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 99.93 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 99.93 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 99.93 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.93 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 99.93 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 99.93 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 99.93 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 99.93 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 99.92 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 99.92 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 99.92 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 99.92 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 99.92 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 99.92 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 99.92 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 99.92 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.92 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 99.92 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 99.92 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 99.92 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 99.92 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 99.92 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 99.92 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 99.92 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 99.92 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.92 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.92 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.92 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 99.92 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 99.92 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 99.92 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 99.92 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.92 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 99.92 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 99.92 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 99.92 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 99.92 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 99.92 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 99.92 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 99.92 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 99.92 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 99.92 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 99.92 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 99.92 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 99.92 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 99.92 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 99.92 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 99.92 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.92 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 99.92 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.92 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.92 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 99.92 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 99.92 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 99.92 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.92 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 99.92 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 99.92 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.92 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.92 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 99.92 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.92 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 99.92 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 99.92 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 99.92 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 99.91 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.91 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 99.91 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.91 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 99.91 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.91 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 99.91 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.91 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 99.91 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 99.91 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.91 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 99.91 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 99.91 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 99.91 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 99.91 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 99.91 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 99.91 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 99.91 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 99.91 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 99.91 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 99.91 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 99.91 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 99.91 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 99.91 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 99.91 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 99.91 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 99.91 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 99.91 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 99.91 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 99.91 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 99.91 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 99.91 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 99.91 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 99.91 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 99.91 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 99.91 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 99.91 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 99.91 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 99.91 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 99.91 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 99.91 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 99.91 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 99.91 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 99.91 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 99.91 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 99.91 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 99.91 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 99.91 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 99.91 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 99.91 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 99.91 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 99.91 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 99.91 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 99.91 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 99.91 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 99.91 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 99.91 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 99.91 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 99.91 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.9 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 99.9 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 99.9 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 99.9 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 99.9 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 99.9 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 99.9 | |
| PRK13541 | 195 | cytochrome c biogenesis protein CcmA; Provisional | 99.9 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 99.9 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 99.9 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 99.9 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 99.9 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 99.9 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 99.9 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 99.9 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 99.9 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 99.9 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 99.9 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 99.9 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 99.9 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 99.9 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 99.9 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 99.9 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 99.9 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 99.9 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 99.9 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 99.9 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 99.9 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 99.9 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 99.9 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 99.9 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 99.9 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 99.9 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 99.9 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 99.9 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 99.9 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 99.9 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 99.9 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 99.9 | |
| COG1119 | 257 | ModF ABC-type molybdenum transport system, ATPase | 99.9 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 99.9 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 99.9 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 99.9 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 99.9 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 99.9 | |
| COG4586 | 325 | ABC-type uncharacterized transport system, ATPase | 99.89 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 99.89 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 99.89 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 99.89 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 99.89 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 99.89 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 99.89 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 99.89 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 99.89 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 99.89 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 99.89 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 99.89 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 99.89 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 99.89 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 99.89 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 99.89 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 99.89 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 99.89 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 99.89 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 99.89 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 99.89 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 99.89 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 99.89 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 99.89 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 99.89 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 99.89 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 99.89 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 99.89 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 99.89 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 99.88 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 99.88 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 99.88 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 99.88 | |
| cd03237 | 246 | ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o | 99.88 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 99.88 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 99.88 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 99.88 | |
| cd00267 | 157 | ABC_ATPase ABC (ATP-binding cassette) transporter | 99.88 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 99.88 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 99.88 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 99.88 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 99.88 | |
| cd03236 | 255 | ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o | 99.88 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 99.88 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 99.88 | |
| cd03227 | 162 | ABC_Class2 ABC-type Class 2 contains systems invol | 99.88 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 99.87 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 99.87 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 99.87 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 99.87 | |
| PRK15177 | 213 | Vi polysaccharide export ATP-binding protein VexC; | 99.87 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 99.87 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 99.87 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 99.87 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 99.87 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 99.87 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 99.86 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 99.86 | |
| TIGR03771 | 223 | anch_rpt_ABC anchored repeat-type ABC transporter, | 99.86 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 99.86 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 99.86 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.86 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 99.86 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 99.86 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 99.86 | |
| COG4107 | 258 | PhnK ABC-type phosphonate transport system, ATPase | 99.86 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 99.86 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 99.86 | |
| COG4161 | 242 | ArtP ABC-type arginine transport system, ATPase co | 99.85 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 99.85 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 99.85 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 99.85 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 99.85 | |
| COG0396 | 251 | sufC Cysteine desulfurase activator ATPase [Posttr | 99.85 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 99.85 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 99.85 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 99.85 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 99.85 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 99.85 | |
| COG1134 | 249 | TagH ABC-type polysaccharide/polyol phosphate tran | 99.85 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 99.85 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 99.85 | |
| COG4133 | 209 | CcmA ABC-type transport system involved in cytochr | 99.85 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 99.85 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 99.85 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 99.85 | |
| PRK10535 | 648 | macrolide transporter ATP-binding /permease protei | 99.84 | |
| cd03270 | 226 | ABC_UvrA_I The excision repair protein UvrA domain | 99.84 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 99.84 | |
| COG4608 | 268 | AppF ABC-type oligopeptide transport system, ATPas | 99.84 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 99.84 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 99.84 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 99.84 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 99.84 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 99.84 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 99.84 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 99.83 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.83 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.83 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 99.83 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 99.83 | |
| COG4674 | 249 | Uncharacterized ABC-type transport system, ATPase | 99.83 | |
| TIGR01187 | 325 | potA spermidine/putrescine ABC transporter ATP-bin | 99.83 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 99.82 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 99.81 | |
| COG1101 | 263 | PhnK ABC-type uncharacterized transport system, AT | 99.8 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 99.8 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 99.79 | |
| cd03278 | 197 | ABC_SMC_barmotin Barmotin is a tight junction-asso | 99.79 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 99.79 | |
| KOG0059 | 885 | consensus Lipid exporter ABCA1 and related protein | 99.78 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 99.78 | |
| COG4136 | 213 | ABC-type uncharacterized transport system, ATPase | 99.78 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.78 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 99.78 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 99.78 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 99.78 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 99.78 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 99.77 | |
| COG4778 | 235 | PhnL ABC-type phosphonate transport system, ATPase | 99.77 | |
| cd03279 | 213 | ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex | 99.77 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 99.76 | |
| cd03271 | 261 | ABC_UvrA_II The excision repair protein UvrA domai | 99.76 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 99.76 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 99.76 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 99.75 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 99.75 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 99.75 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 99.74 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 99.74 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 99.74 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 99.74 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 99.73 | |
| cd03272 | 243 | ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein | 99.73 | |
| cd03274 | 212 | ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein | 99.72 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 99.72 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.72 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 99.71 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 99.7 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 99.7 | |
| cd03240 | 204 | ABC_Rad50 The catalytic domains of Rad50 are simil | 99.7 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 99.69 | |
| cd03275 | 247 | ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein | 99.69 | |
| cd03273 | 251 | ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein | 99.68 | |
| COG4167 | 267 | SapF ABC-type antimicrobial peptide transport syst | 99.68 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 99.68 | |
| COG4138 | 248 | BtuD ABC-type cobalamin transport system, ATPase c | 99.67 | |
| cd03276 | 198 | ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein | 99.66 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 99.66 | |
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 99.64 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.64 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.63 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.61 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.58 | |
| KOG2355 | 291 | consensus Predicted ABC-type transport, ATPase com | 99.57 | |
| cd03239 | 178 | ABC_SMC_head The structural maintenance of chromos | 99.56 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.54 | |
| cd03277 | 213 | ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein | 99.53 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.52 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 99.51 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 99.47 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 99.46 | |
| COG2401 | 593 | ABC-type ATPase fused to a predicted acetyltransfe | 99.44 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 99.44 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 99.41 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 99.4 | |
| cd03241 | 276 | ABC_RecN RecN ATPase involved in DNA repair; ABC ( | 99.39 | |
| KOG0060 | 659 | consensus Long-chain acyl-CoA transporter, ABC sup | 99.39 | |
| KOG0064 | 728 | consensus Peroxisomal long-chain acyl-CoA transpor | 99.35 | |
| PF05192 | 204 | MutS_III: MutS domain III C-terminus.; InterPro: I | 99.35 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.33 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 99.3 | |
| COG4170 | 330 | SapD ABC-type antimicrobial peptide transport syst | 99.21 | |
| cd03242 | 270 | ABC_RecF RecF is a recombinational DNA repair ATPa | 99.16 | |
| PF02463 | 220 | SMC_N: RecF/RecN/SMC N terminal domain; InterPro: | 99.15 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.1 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.06 | |
| KOG0063 | 592 | consensus RNAse L inhibitor, ABC superfamily [RNA | 99.02 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 99.01 | |
| COG3910 | 233 | Predicted ATPase [General function prediction only | 98.97 | |
| PRK13695 | 174 | putative NTPase; Provisional | 98.96 | |
| TIGR02858 | 270 | spore_III_AA stage III sporulation protein AA. Mem | 98.94 | |
| cd01124 | 187 | KaiC KaiC is a circadian clock protein primarily f | 98.8 | |
| PRK08533 | 230 | flagellar accessory protein FlaH; Reviewed | 98.8 | |
| PF13304 | 303 | AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T | 98.78 | |
| TIGR00634 | 563 | recN DNA repair protein RecN. All proteins in this | 98.7 | |
| cd01120 | 165 | RecA-like_NTPases RecA-like NTPases. This family i | 98.63 | |
| PRK10869 | 553 | recombination and repair protein; Provisional | 98.62 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 98.6 | |
| TIGR00618 | 1042 | sbcc exonuclease SbcC. This family is based on the | 98.57 | |
| KOG0063 | 592 | consensus RNAse L inhibitor, ABC superfamily [RNA | 98.55 | |
| PRK07721 | 438 | fliI flagellum-specific ATP synthase; Validated | 98.53 | |
| PHA02562 | 562 | 46 endonuclease subunit; Provisional | 98.52 | |
| PRK06067 | 234 | flagellar accessory protein FlaH; Validated | 98.49 | |
| PRK01156 | 895 | chromosome segregation protein; Provisional | 98.48 | |
| PRK03918 | 880 | chromosome segregation protein; Provisional | 98.43 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 98.41 | |
| PRK06793 | 432 | fliI flagellum-specific ATP synthase; Validated | 98.4 | |
| TIGR02788 | 308 | VirB11 P-type DNA transfer ATPase VirB11. The VirB | 98.36 | |
| PRK10246 | 1047 | exonuclease subunit SbcC; Provisional | 98.32 | |
| PTZ00132 | 215 | GTP-binding nuclear protein Ran; Provisional | 98.28 | |
| TIGR02168 | 1179 | SMC_prok_B chromosome segregation protein SMC, com | 98.26 | |
| TIGR03185 | 650 | DNA_S_dndD DNA sulfur modification protein DndD. T | 98.25 | |
| TIGR02169 | 1164 | SMC_prok_A chromosome segregation protein SMC, pri | 98.23 | |
| TIGR00606 | 1311 | rad50 rad50. This family is based on the phylogeno | 98.23 | |
| cd01131 | 198 | PilT Pilus retraction ATPase PilT. PilT is a nucle | 98.21 | |
| COG0419 | 908 | SbcC ATPase involved in DNA repair [DNA replicatio | 98.1 | |
| cd01128 | 249 | rho_factor Transcription termination factor rho is | 97.94 | |
| cd01125 | 239 | repA Hexameric Replicative Helicase RepA. RepA is | 97.92 | |
| PRK02224 | 880 | chromosome segregation protein; Provisional | 97.91 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 97.9 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 97.86 | |
| PRK13830 | 818 | conjugal transfer protein TrbE; Provisional | 97.86 | |
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 97.83 | |
| PRK09183 | 259 | transposase/IS protein; Provisional | 97.82 | |
| cd01130 | 186 | VirB11-like_ATPase Type IV secretory pathway compo | 97.82 | |
| cd02023 | 198 | UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1. | 97.82 | |
| TIGR03881 | 229 | KaiC_arch_4 KaiC domain protein, PAE1156 family. M | 97.8 | |
| TIGR01420 | 343 | pilT_fam pilus retraction protein PilT. This model | 97.78 | |
| PRK14721 | 420 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.73 | |
| COG4637 | 373 | Predicted ATPase [General function prediction only | 97.73 | |
| PRK00064 | 361 | recF recombination protein F; Reviewed | 97.72 | |
| TIGR02903 | 615 | spore_lon_C ATP-dependent protease, Lon family. Me | 97.71 | |
| TIGR01026 | 440 | fliI_yscN ATPase FliI/YscN family. This family of | 97.67 | |
| cd00820 | 107 | PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC | 97.65 | |
| TIGR00767 | 415 | rho transcription termination factor Rho. Members | 97.6 | |
| TIGR02655 | 484 | circ_KaiC circadian clock protein KaiC. Members of | 97.59 | |
| cd01123 | 235 | Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of r | 97.58 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 97.58 | |
| TIGR00152 | 188 | dephospho-CoA kinase. This model produces scores i | 97.54 | |
| TIGR00416 | 454 | sms DNA repair protein RadA. The gene protuct code | 97.53 | |
| cd01393 | 226 | recA_like RecA is a bacterial enzyme which has rol | 97.52 | |
| TIGR00611 | 365 | recf recF protein. All proteins in this family for | 97.5 | |
| TIGR03015 | 269 | pepcterm_ATPase putative secretion ATPase, PEP-CTE | 97.5 | |
| PRK06731 | 270 | flhF flagellar biosynthesis regulator FlhF; Valida | 97.49 | |
| cd01121 | 372 | Sms Sms (bacterial radA) DNA repair protein. This | 97.49 | |
| PRK14723 | 767 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.49 | |
| PRK04296 | 190 | thymidine kinase; Provisional | 97.49 | |
| PRK06526 | 254 | transposase; Provisional | 97.49 | |
| PRK14722 | 374 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.45 | |
| TIGR02237 | 209 | recomb_radB DNA repair and recombination protein R | 97.43 | |
| PF13555 | 62 | AAA_29: P-loop containing region of AAA domain | 97.43 | |
| PRK10865 | 857 | protein disaggregation chaperone; Provisional | 97.4 | |
| PTZ00454 | 398 | 26S protease regulatory subunit 6B-like protein; P | 97.39 | |
| PTZ00035 | 337 | Rad51 protein; Provisional | 97.36 |
| >PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-99 Score=899.40 Aligned_cols=657 Identities=36% Similarity=0.528 Sum_probs=583.2
Q ss_pred CchHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHH-cCCCCCCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Q 004609 1 MGHAVVQKAQIPFGKSLEESQKLLNQTSAALAMMQ-SQPLDLSTIEDIAGILNSAVSGQLLSPSEICAVRRTLRAVNNVW 79 (742)
Q Consensus 1 mG~~~~~~~~l~~~~~~~~~~~~l~~~~e~~~~~~-~~~~~l~~~~di~~~l~r~~~g~~l~~~el~~i~~~l~~~~~l~ 79 (742)
||++.+++ +.|..|+++|+++|++|.+|+.++. .+.+||++++|+++++.++..|++|++.||+.|+.+|..+..++
T Consensus 26 ~Gk~~l~~--l~P~~~~~~i~~~l~~~~e~~~~~~~~~~~~l~~~~Di~~~l~r~~~g~~l~~~eL~~i~~~l~~~~~l~ 103 (782)
T PRK00409 26 LGKEKVLQ--LDPETDFEEVEELLEETDEAAKLLRLKGLPPFEGVKDIDDALKRAEKGGVLSGDELLEIAKTLRYFRQLK 103 (782)
T ss_pred HHHHHHHc--CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 69999999 8999999999999999999998885 78899999999999999999999999999999999999999999
Q ss_pred HHHHHhhhccCCccccchhHHHHHhcCCChhHHHHHHhhhhccCCCcccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004609 80 KKLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEKIGFCIDCKLLIILDRASEDLELIRAERKRNMENLDSLLKKVAAQ 159 (742)
Q Consensus 80 ~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~l~~~I~~~id~~~~~i~d~aS~~L~~iR~~~~~~~~~l~~~l~~~~~~ 159 (742)
+++....+ ...+|.|..++..+.+++++.+.|.++||++| .|+|+|||+|+.||+++++....+++.+.+..+.
T Consensus 104 ~~l~~~~~-----~~~~~~L~~~~~~l~~~~~l~~~i~~~id~~g-~i~d~aS~eL~~iR~~~~~~~~~i~~~l~~~~~~ 177 (782)
T PRK00409 104 RFIEDLEE-----EEELPILEEWVAKIRTLPELEQEIHNCIDEEG-EVKDSASEKLRGIRRQLRRKKSRIREKLESIIRS 177 (782)
T ss_pred HHHHhccc-----ccchhHHHHHHHcCcCcHHHHHHHHHHhCCCC-EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99974200 01367899999999999999999999999985 7999999999999999998877777777665433
Q ss_pred HHHhcCCCCcccccccCcEEEEEccccccCCCCcEEEEEccCCcEEEeccchhhhhhhHHHHHhHHHHHHHHHHHHHHHH
Q 004609 160 IFQAGGIDKPLITKRRSRMCVGIKASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEETAILSLLTA 239 (742)
Q Consensus 160 ~~~~~~~~~~~it~r~~r~vi~v~~~~~~~~~~g~v~~~s~sg~t~~~ep~~~v~lnn~~~~l~~~e~~ee~~Il~~L~~ 239 (742)
.-...++++.++|+|++||||||+.++++.+| |++|++|+||+|+|+||..++++||++.++..++.+++.+|+++|+.
T Consensus 178 ~~~~~~L~d~~it~r~~r~~i~vk~~~~~~~~-g~v~~~s~sg~t~y~ep~~~~~ln~~l~~l~~~~~~~~~~il~~l~~ 256 (782)
T PRK00409 178 KSLQKYLQDTIITIRNDRYVLPVKAEYKHAIK-GIVHDQSSSGATLYIEPQSVVELNNEIRELRNKEEQEIERILKELSA 256 (782)
T ss_pred cccccccccceEEEECCEEEEEechhhhccCC-CceeeEECCCCEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22224577899999999999999999999998 99999999999999999999999999999999999999999999999
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHhHhCCccceeecCCCCCCCcceEEEccccccccccccccccccccCCCCCCC
Q 004609 240 EIAKSEREIKYLMDRVLEIDLAFARAGFAQWMDGVCPILSSQSHVSFDSSINIEGIKHPLLLGSSLRSLSAASSNSNPLK 319 (742)
Q Consensus 240 ~i~~~~~~l~~~~~~l~~lD~~~A~a~~a~~~~~~~P~~~~~~~~~~~~~i~l~~~rHPll~~~~~~~~~~~~~~~~~~~ 319 (742)
.|.++.+.|..+++++++||+++|+|+||.+++||+|.|++++ .|.|+++|||+|..
T Consensus 257 ~i~~~~~~l~~~~~~l~~lD~l~a~a~~a~~~~~~~P~~~~~~------~i~l~~~rHPll~~----------------- 313 (782)
T PRK00409 257 KVAKNLDFLKFLNKIFDELDFIFARARYAKALKATFPLFNDEG------KIDLRQARHPLLDG----------------- 313 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccceEcCCC------cEEEcCcCCceecc-----------------
Confidence 9999999999999999999999999999999999999998753 69999999999942
Q ss_pred CCCCCCcEEEeeeeeecCCceecccccccCCceEEEEEeCCCCCcchHHhhHHhhhhhhhhceeecCCCCCCchHHHHHH
Q 004609 320 SDVENSEMTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLIL 399 (742)
Q Consensus 320 ~~~~~~~l~~~nl~~~y~~~~v~i~l~l~~g~~~~~ItGpNGsGKSTlLK~lGli~~maq~G~~vPa~~~~~i~~~d~il 399 (742)
..+||+|+.+..+.++++|||||||||||+||++|++++|+|+|+|||+...+.+++|++||
T Consensus 314 ------------------~~~Vpndi~l~~~~~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~~~~~i~~~~~i~ 375 (782)
T PRK00409 314 ------------------EKVVPKDISLGFDKTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPANEPSEIPVFKEIF 375 (782)
T ss_pred ------------------CceECceeEECCCceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCccccccceEE
Confidence 02789999998766899999999999999999999999999999999998667999999999
Q ss_pred HHcCCccccccccccchHHHHHHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh
Q 004609 400 ADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCL 479 (742)
Q Consensus 400 ~~ig~~~~~~~~lstfSgg~krl~~~~~l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~l~~~ 479 (742)
+++|+.+++.+++|+||+||+++..+...+++|+|+||||||+||||.++.+++.++++++.+.++++|+||||.++..+
T Consensus 376 ~~ig~~~si~~~lStfS~~m~~~~~Il~~~~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el~~~ 455 (782)
T PRK00409 376 ADIGDEQSIEQSLSTFSGHMTNIVRILEKADKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKELKAL 455 (782)
T ss_pred EecCCccchhhchhHHHHHHHHHHHHHHhCCcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHHHHH
Confidence 99999999999999999999988877776799999999999999999999999999999999889999999999999988
Q ss_pred cccccceecceEEEecCccccchhhhcCCCCCchHHHHHHHCCCCHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHH
Q 004609 480 KDKDTRFENAATEFSLETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVERLRPERQQHRKSELYQSLMEERR 559 (742)
Q Consensus 480 a~~~~~i~~g~~~~~~~~l~~~y~l~~g~~~~s~a~~ia~~~gl~~~ii~~A~~~~~~~~~~~~~~~~e~~i~~le~~~~ 559 (742)
+.....+.++++.|+.+++.|+|++..|.+|.|||+.+|+++|+|++|+++|++++.. +..+++++|++|++++.
T Consensus 456 ~~~~~~v~~~~~~~d~~~l~~~Ykl~~G~~g~S~a~~iA~~~Glp~~ii~~A~~~~~~-----~~~~~~~li~~l~~~~~ 530 (782)
T PRK00409 456 MYNREGVENASVEFDEETLRPTYRLLIGIPGKSNAFEIAKRLGLPENIIEEAKKLIGE-----DKEKLNELIASLEELER 530 (782)
T ss_pred HhcCCCeEEEEEEEecCcCcEEEEEeeCCCCCcHHHHHHHHhCcCHHHHHHHHHHHhh-----hhhHHHHHHHHHHHHHH
Confidence 8888889999999999999999999999999999999999999999999999999874 55689999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHhHHHH
Q 004609 560 KLESQARTAASLHAEIMDLYREIEDEAKDLDRRAAHLKAKETQQVQQELNFAKVQIDTVVQDFENQLRDASADEINSLIK 639 (742)
Q Consensus 560 ~~e~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (742)
+++++.+++++..+++++++++++++.+++++++.++.+++.+++++.+.++++++++++++|++...........+..+
T Consensus 531 ~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~~~~~a~~~l~~a~~~~~~~i~~lk~~~~~~~~~~~~~~~~ 610 (782)
T PRK00409 531 ELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKEADEIIKELRQLQKGGYASVKAHELI 610 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999987421111101223445
Q ss_pred HHHHHHHHHHHccCCCCCCcccccCCCCCCCCCCCEEEEcccCCeeEEEEEeeCCCceEEEEEcceEEEeeCCCeeeCC
Q 004609 640 ESESAIAAIVEAHRPDDDFSVSETNTSSFTPQFGEQVHVKSLGDKLATVVEVPGDDDTVLVQYGKMRVRVKKNNIRPIP 718 (742)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gd~V~v~~~~~~~g~V~~~~~~~~~~~V~~g~~k~~v~~~~l~~~~ 718 (742)
++++.+++......... . ........+++||.|+|.++|+ .|+|+++++ ++.++|++|+|||+|+.++|.++.
T Consensus 611 ~~~~~l~~~~~~~~~~~---~-~~~~~~~~~~~Gd~V~v~~~~~-~g~v~~i~~-~~~~~V~~g~~k~~v~~~~l~~~~ 683 (782)
T PRK00409 611 EARKRLNKANEKKEKKK---K-KQKEKQEELKVGDEVKYLSLGQ-KGEVLSIPD-DKEAIVQAGIMKMKVPLSDLEKIQ 683 (782)
T ss_pred HHHHHHHHhhhhhhhcc---c-cccccccCCCCCCEEEEccCCc-eEEEEEEcC-CCeEEEEECCEEEEEeHHHceeCc
Confidence 55555544332211100 0 1011114589999999999998 599999974 458999999999999999998766
|
|
| >TIGR01069 mutS2 MutS2 family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-97 Score=873.38 Aligned_cols=645 Identities=32% Similarity=0.470 Sum_probs=577.6
Q ss_pred CchHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCCCCcCHHHHHHHHhcCCCCCHHH-HHHHHHHHHHHHHHH
Q 004609 1 MGHAVVQKAQIPFGKSLEESQKLLNQTSAALAMMQSQPLDLSTIEDIAGILNSAVSGQLLSPSE-ICAVRRTLRAVNNVW 79 (742)
Q Consensus 1 mG~~~~~~~~l~~~~~~~~~~~~l~~~~e~~~~~~~~~~~l~~~~di~~~l~r~~~g~~l~~~e-l~~i~~~l~~~~~l~ 79 (742)
+|++.+++ +.|..++++++++|++|++|..++. ++||+++.||++++.++..|.++++.| |+.|+.+|..+..++
T Consensus 26 ~gk~~~~~--l~P~~~~~~i~~~l~~~~e~~~~~~--~~~l~~~~di~~~l~r~~~g~~l~~~e~l~~i~~~l~~~~~l~ 101 (771)
T TIGR01069 26 LGKEDAIG--LKPPKSVEESKEIIIKLTALGSIEN--NVRFFGFEDIRELLKRAELGGIVKGLEYILVIQNALKTVKHLK 101 (771)
T ss_pred HHHHHHhc--CCCCCCHHHHHHHHHHHHHHHHhhc--cCCcCCCccHHHHHHHHhcCCcCChHHHHHHHHHHHHHHHHHH
Confidence 58999999 9999999999999999999998886 889999999999999999999999988 999999999999999
Q ss_pred HHHHHhhhccCCccccchhHHHHHhcCCChhHHHHHHhhhhccCCCcccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004609 80 KKLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEKIGFCIDCKLLIILDRASEDLELIRAERKRNMENLDSLLKKVAAQ 159 (742)
Q Consensus 80 ~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~l~~~I~~~id~~~~~i~d~aS~~L~~iR~~~~~~~~~l~~~l~~~~~~ 159 (742)
.++... ..+|.|..++..+.++++|.+.|.++||++| .|+|+|||+|++||++++.+..++++.+.+..+.
T Consensus 102 ~~l~~~--------~~~~~L~~~~~~l~~~~~l~~~i~~~id~~g-~i~d~aS~~L~~ir~~~~~~~~~i~~~l~~~~~~ 172 (771)
T TIGR01069 102 VLSEHV--------LDLEILFHLRLNLITLPPLENDIIACIDDDG-KVKDGASEELDAIRESLKALEEEVVKRLHKIIRS 172 (771)
T ss_pred HHHhcc--------ccchHHHHHHhcCCCcHHHHHHHHHHhCCCC-EECCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999642 1378899999999999999999999999985 7999999999999999998887777777665432
Q ss_pred HHHhcCCCCcccccccCcEEEEEccccccCCCCcEEEEEccCCcEEEeccchhhhhhhHHHHHhHHHHHHHHHHHHHHHH
Q 004609 160 IFQAGGIDKPLITKRRSRMCVGIKASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEETAILSLLTA 239 (742)
Q Consensus 160 ~~~~~~~~~~~it~r~~r~vi~v~~~~~~~~~~g~v~~~s~sg~t~~~ep~~~v~lnn~~~~l~~~e~~ee~~Il~~L~~ 239 (742)
.-...++++.+||+|+|||||||++++++.+| |++|+.|+||+|+|+||.+++++||++.++..++.+|+.+|+++|+.
T Consensus 173 ~~~~~~l~~~~it~r~~r~vipvk~~~~~~i~-g~v~~~S~sg~t~~~ep~~~~~ln~~l~~l~~~~~~e~~~il~~L~~ 251 (771)
T TIGR01069 173 KELAKYLSDTIVTIRNGRYVLPLKSGFKGKIK-GIVHDTSSSGETFYIEPQAIVKLNNKLAQLKNEEECEIEKILRTLSE 251 (771)
T ss_pred hchhhhhcCceEEEECCEEEEEeeHHHhhcCC-CeEEEEeCCCCEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11124567899999999999999999999998 99999999999999999999999999999999999999999999999
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHhHhCCccceeecCCCCCCCcceEEEccccccccccccccccccccCCCCCCC
Q 004609 240 EIAKSEREIKYLMDRVLEIDLAFARAGFAQWMDGVCPILSSQSHVSFDSSINIEGIKHPLLLGSSLRSLSAASSNSNPLK 319 (742)
Q Consensus 240 ~i~~~~~~l~~~~~~l~~lD~~~A~a~~a~~~~~~~P~~~~~~~~~~~~~i~l~~~rHPll~~~~~~~~~~~~~~~~~~~ 319 (742)
.|.++.+.|..+++++++||+++|+|+||..+++++|.+++.+ .|.++++|||++...
T Consensus 252 ~i~~~~~~l~~~~~~l~~lD~l~a~a~~a~~~~~~~P~~~~~~------~i~l~~~rhPll~~~---------------- 309 (771)
T TIGR01069 252 KVQEYLLELKFLFKEFDFLDSLQARARYAKAVKGEFPMPSFTG------KIILENARHPLLKEP---------------- 309 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCeeceecCCC------CEEEccccCceecCC----------------
Confidence 9999999999999999999999999999999999999997753 699999999998420
Q ss_pred CCCCCCcEEEeeeeeecCCceecccccccCCceEEEEEeCCCCCcchHHhhHHhhhhhhhhceeecCCCCCCchHHHHHH
Q 004609 320 SDVENSEMTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLIL 399 (742)
Q Consensus 320 ~~~~~~~l~~~nl~~~y~~~~v~i~l~l~~g~~~~~ItGpNGsGKSTlLK~lGli~~maq~G~~vPa~~~~~i~~~d~il 399 (742)
.+||+|+.+..+.++++||||||||||||||++|++.+|+++|+++|+...+.+++|++++
T Consensus 310 -------------------~~vp~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~~Vpa~~~~~~~~~d~i~ 370 (771)
T TIGR01069 310 -------------------KVVPFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSGIPIPANEHSEIPYFEEIF 370 (771)
T ss_pred -------------------ceEeceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhCCCccCCccccccchhhee
Confidence 2689999998777899999999999999999999999999999999998778899999999
Q ss_pred HHcCCccccccccccchHHHHHHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh
Q 004609 400 ADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCL 479 (742)
Q Consensus 400 ~~ig~~~~~~~~lstfSgg~krl~~~~~l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~l~~~ 479 (742)
.++|+.+++...+|+||+||++++.++..+++|+||||||||+||||.++.+|+.++++++.+.|+++|+||||.+++.+
T Consensus 371 ~~i~~~~si~~~LStfS~~m~~~~~il~~~~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL~~~ 450 (771)
T TIGR01069 371 ADIGDEQSIEQNLSTFSGHMKNISAILSKTTENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKELKAL 450 (771)
T ss_pred eecChHhHHhhhhhHHHHHHHHHHHHHHhcCCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHHH
Confidence 99999999999999999999998888887899999999999999999999999999999999989999999999999999
Q ss_pred cccccceecceEEEecCccccchhhhcCCCCCchHHHHHHHCCCCHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHH
Q 004609 480 KDKDTRFENAATEFSLETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVERLRPERQQHRKSELYQSLMEERR 559 (742)
Q Consensus 480 a~~~~~i~~g~~~~~~~~l~~~y~l~~g~~~~s~a~~ia~~~gl~~~ii~~A~~~~~~~~~~~~~~~~e~~i~~le~~~~ 559 (742)
+.....+.|++|.||.+++.|+|++..|+++.|||+.||+++|+|++|+++|++++.. ...+++++|++|++++.
T Consensus 451 ~~~~~~v~~~~~~~d~~~l~p~Ykl~~G~~g~S~a~~iA~~~Glp~~ii~~A~~~~~~-----~~~~~~~li~~L~~~~~ 525 (771)
T TIGR01069 451 MYNNEGVENASVLFDEETLSPTYKLLKGIPGESYAFEIAQRYGIPHFIIEQAKTFYGE-----FKEEINVLIEKLSALEK 525 (771)
T ss_pred hcCCCCeEEeEEEEcCCCCceEEEECCCCCCCcHHHHHHHHhCcCHHHHHHHHHHHHh-----hHHHHHHHHHHHHHHHH
Confidence 8888899999999999999999999999999999999999999999999999999864 45689999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHhHHHH
Q 004609 560 KLESQARTAASLHAEIMDLYREIEDEAKDLDRRAAHLKAKETQQVQQELNFAKVQIDTVVQDFENQLRDASADEINSLIK 639 (742)
Q Consensus 560 ~~e~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (742)
+++++..++++..+++++.+++++++.+++++++.++..++.+++++.+.+++++++++++++++.... .+..+
T Consensus 526 ~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~a~~ea~~~~~~a~~~~~~~i~~lk~~~~~------~~~~~ 599 (771)
T TIGR01069 526 ELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERNKKLELEKEAQEALKALKKEVESIIRELKEKKIH------KAKEI 599 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc------HHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999874211 22334
Q ss_pred HHHHHHHHHHHccCCCCCCcccccCCCCCCCCCCCEEEEcccCCeeEEEEEeeCCCceEEEEEcceEEEeeCCCeeeCC
Q 004609 640 ESESAIAAIVEAHRPDDDFSVSETNTSSFTPQFGEQVHVKSLGDKLATVVEVPGDDDTVLVQYGKMRVRVKKNNIRPIP 718 (742)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gd~V~v~~~~~~~g~V~~~~~~~~~~~V~~g~~k~~v~~~~l~~~~ 718 (742)
++++.+++........ . ......... ++||.|+|.++|+ .|+|+++++ +++|+|++|+|||+|++++|.++.
T Consensus 600 ~~~~~~~~~~~~~~~~---~-~~~~~~~~~-~~Gd~V~v~~~~~-~g~v~~i~~-~~~~~V~~g~~k~~v~~~~l~~~~ 671 (771)
T TIGR01069 600 KSIEDLVKLKETKQKI---P-QKPTNFQAD-KIGDKVRIRYFGQ-KGKIVQILG-GNKWNVTVGGMRMKVHGSELEKIN 671 (771)
T ss_pred HHHHHHHHHHHhhccc---c-ccccccccC-CCCCEEEEccCCc-eEEEEEEcC-CCeEEEEECCEEEEEeHHHceecc
Confidence 4444444432211110 0 000111123 8999999999998 599999974 568999999999999999998876
|
Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function. |
| >COG1193 Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-81 Score=727.33 Aligned_cols=634 Identities=32% Similarity=0.430 Sum_probs=562.3
Q ss_pred chHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHH-cCCCCCCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH
Q 004609 2 GHAVVQKAQIPFGKSLEESQKLLNQTSAALAMMQ-SQPLDLSTIEDIAGILNSAVSGQLLSPSEICAVRRTLRAVNNVWK 80 (742)
Q Consensus 2 G~~~~~~~~l~~~~~~~~~~~~l~~~~e~~~~~~-~~~~~l~~~~di~~~l~r~~~g~~l~~~el~~i~~~l~~~~~l~~ 80 (742)
|++.+++ +-|..+.+.+...+++|.++..++. .|.+|++++.|+...+.++..|+.|.++||+.|..+|..+..+++
T Consensus 25 g~~~~~~--l~p~~~~~~i~~~~~e~~~~~~~~~~~g~~~~~~l~~i~~~l~~~e~g~~l~~~el~~i~~~l~~~~~lkr 102 (753)
T COG1193 25 GLEELKN--LKPRTDLELIEEELSETAEALDILEDEGLPPLGGLNDVSEALGRLEKGGRLHVEELLEISDFLRGFRALKR 102 (753)
T ss_pred HHHHHHh--cCccccHHHHHHHHHHHHHHHHHHhccCCCCchhhhhhHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHHH
Confidence 7888999 9999999999999999999999997 688999999999999999999999999999999999999999999
Q ss_pred HHHHhhhccCCccccchhHHHHHhcCCChhHHHHHHhhhhccCCCcccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004609 81 KLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEKIGFCIDCKLLIILDRASEDLELIRAERKRNMENLDSLLKKVAAQI 160 (742)
Q Consensus 81 ~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~l~~~I~~~id~~~~~i~d~aS~~L~~iR~~~~~~~~~l~~~l~~~~~~~ 160 (742)
++..... +. ..+...+..++.+...|..+||+++ .|+|.||+.|..||..++....++.+.+.+..+.-
T Consensus 103 ~~~~~e~--------~~--~~~~~~~~~~~~l~~~i~~~id~~g-~i~d~as~~l~~ir~~lr~~~~~i~~~l~~~~~~~ 171 (753)
T COG1193 103 AIKKLER--------IK--RTLALALIELSDLELEINIPIDDDG-LIKDRASFELDAIRRQLRDLEEEIRDKLESLIRSK 171 (753)
T ss_pred HHHHhhh--------HH--HHHHHhhhcchHHHHHHhhhhcccc-cccccccHHHHHHHhhhHHHHHHHHHHHHHHHhhh
Confidence 9986422 22 4566778899999999999999985 69999999999999998766555555544432211
Q ss_pred HHhcCCCCcccccccCcEEEEEccccccCCCCcEEEEEccCCcEEEeccchhhhhhhHHHHHhHHHHHHHHHHHHHHHHH
Q 004609 161 FQAGGIDKPLITKRRSRMCVGIKASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEETAILSLLTAE 240 (742)
Q Consensus 161 ~~~~~~~~~~it~r~~r~vi~v~~~~~~~~~~g~v~~~s~sg~t~~~ep~~~v~lnn~~~~l~~~e~~ee~~Il~~L~~~ 240 (742)
- ...+++.+++.|++|||+||++.|++.++ |++|+.|++|+|+|+||..++.+||++..+..+|+.|+.+|+++|+..
T Consensus 172 ~-~~~L~e~~v~~r~~r~vlpvk~~fk~~i~-giv~d~sssg~tl~ieP~~vv~l~n~~~~l~~eE~~e~e~il~~lsa~ 249 (753)
T COG1193 172 E-AKYLQDRIVTTRDGREVLPVKAEFKGAIK-GIVHDTSSSGATLYIEPRSVVKLNNELRALLVEEDEEEERILRELSAL 249 (753)
T ss_pred h-hHhhhhceEeccCCeEEeHHHHHhhhhcC-ceEeecccccCeeeecchHHHhhccHhhhhhccchHhHHHHHHHHHHH
Confidence 0 33456999999999999999999999998 999999999999999999999999999999999999999999999999
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHhHhCCccceeecCCCCCCCcceEEEccccccccccccccccccccCCCCCCCC
Q 004609 241 IAKSEREIKYLMDRVLEIDLAFARAGFAQWMDGVCPILSSQSHVSFDSSINIEGIKHPLLLGSSLRSLSAASSNSNPLKS 320 (742)
Q Consensus 241 i~~~~~~l~~~~~~l~~lD~~~A~a~~a~~~~~~~P~~~~~~~~~~~~~i~l~~~rHPll~~~~~~~~~~~~~~~~~~~~ 320 (742)
+.++...+..+...++++|++.|+++|+.++.++.|.|++++ .|.+.++|||+|..
T Consensus 250 v~~~~~~l~~~~~~~~~lD~i~Ak~~~~~~~~~v~P~~~~~~------~l~l~~~~HPll~~------------------ 305 (753)
T COG1193 250 VAPVIPELEILLEIIGELDFIEAKVRYAKALKGVKPDFSNDG------VLELLDARHPLLKE------------------ 305 (753)
T ss_pred HhhhhHHHHHHHHHhhhhHHHHHHHHHHHhhccCCCccCCCc------eEEeccccCccCcc------------------
Confidence 999999999999999999999999999999999999999654 79999999999942
Q ss_pred CCCCCcEEEeeeeeecCCceecccccccCCceEEEEEeCCCCCcchHHhhHHhhhhhhhhceeecCCCCCCchHHHHHHH
Q 004609 321 DVENSEMTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILA 400 (742)
Q Consensus 321 ~~~~~~l~~~nl~~~y~~~~v~i~l~l~~g~~~~~ItGpNGsGKSTlLK~lGli~~maq~G~~vPa~~~~~i~~~d~il~ 400 (742)
.|++++.++.....++|||||++||||+||++|++.+|+|+|+++|+..++.+++|+++|+
T Consensus 306 -------------------~v~~~i~~~~e~~~l~ITGpN~GGKtvtLKTlgl~~lm~q~gl~i~a~~gsei~~F~~i~a 366 (753)
T COG1193 306 -------------------DVPNDLELGEELDRLIITGPNTGGKTVTLKTLGLLRLMAQSGLPIPALEGSELPVFVKIFA 366 (753)
T ss_pred -------------------ccccccccccccceeeEecCCCCcceehHHHHHHHHHHHHcCCCeeccCCCcchhHHHhhh
Confidence 3677888887778999999999999999999999999999999999998889999999999
Q ss_pred HcCCccccccccccchHHHHHHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhc
Q 004609 401 DIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLK 480 (742)
Q Consensus 401 ~ig~~~~~~~~lstfSgg~krl~~~~~l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~l~~~a 480 (742)
++||+|++.+.+||||+||.+++.++.-++ +|+++||.++||||.+|++++.++++++.++++.+++||||.+++.++
T Consensus 367 DIGDeQsIeqsLSTFSshm~~i~~il~~~d--sLvl~DElg~GTdp~EgaaLai~ile~l~~~~~~~~~tTH~~elk~~~ 444 (753)
T COG1193 367 DIGDEQSIEQSLSTFSSHMTNIVEILEKAD--SLVLFDELGSGTDPDEGAALAIAILEDLLEKPAKIVATTHYRELKALA 444 (753)
T ss_pred ccCcHHHHHHHHhhhHHHHHHHHHHHhhcc--hhHHHHHhhcCCCcchhHHHHHHHHHHHHhcccceehHhhHHHHHHHH
Confidence 999999999999999999999999985444 999999999999999999999999999999999999999999999999
Q ss_pred ccccceecceEEEecCccccchhhhcCCCCCchHHHHHHHCCCCHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHH
Q 004609 481 DKDTRFENAATEFSLETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVERLRPERQQHRKSELYQSLMEERRK 560 (742)
Q Consensus 481 ~~~~~i~~g~~~~~~~~l~~~y~l~~g~~~~s~a~~ia~~~gl~~~ii~~A~~~~~~~~~~~~~~~~e~~i~~le~~~~~ 560 (742)
.....+.|++|+|+.+++.|+|++..|.+|.|+|+.+|.++|+|..+++.|+..... +...++.++..++....+
T Consensus 445 ~~~~~v~nas~~fd~etL~ptY~l~~G~~g~S~Af~ia~rlGl~~~iie~a~~~~g~-----~~~~~~~~i~~l~~~~~~ 519 (753)
T COG1193 445 AEREGVENASMEFDAETLRPTYRLLEGVPGRSNAFDIALRLGLPEPIIEEAKTEFGE-----EKELLEELIEKLEEVRKE 519 (753)
T ss_pred hcchhhhchhhhhhHHHhhHHHHHhcCCcccchHHHHHHHcCCCHHHHHHHHHhcCc-----hHhHHHHHhhhhHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998763 567899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHhHHHHH
Q 004609 561 LESQARTAASLHAEIMDLYREIEDEAKDLDRRAAHLKAKETQQVQQELNFAKVQIDTVVQDFENQLRDASADEINSLIKE 640 (742)
Q Consensus 561 ~e~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (742)
+++..+.++...++.+.+...+......+.+.+.+....+.+++.+.+.+++.++...+..++... ...
T Consensus 520 ~~~~~~~~e~~~~e~~~l~~~~s~~~~~l~e~~~~~~~~a~~~~~~~~~~a~~e~~~~i~~~~~~~-----------~~~ 588 (753)
T COG1193 520 LEEELEEVEKLLDEVELLTGANSGGKTSLLELKAQIVVLAHMGLPVPAEEAKVEAVDEVKFLKKKK-----------GIL 588 (753)
T ss_pred HHhHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhH-----------HHH
Confidence 999999999999999999999999999999999999999999999999999999998887776211 111
Q ss_pred HHHHHHHHHHccCCCCCCcccccCCCCCCCCCCCEEEEcccCCeeEEEEEeeCCCceEEEEEcceEEEeeCCCeeeCC
Q 004609 641 SESAIAAIVEAHRPDDDFSVSETNTSSFTPQFGEQVHVKSLGDKLATVVEVPGDDDTVLVQYGKMRVRVKKNNIRPIP 718 (742)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gd~V~v~~~~~~~g~V~~~~~~~~~~~V~~g~~k~~v~~~~l~~~~ 718 (742)
....+....+.... ...+ ... ...+++||.|++.+ |+ .|.|+++..+.++|.||+|.|+|+|+..++..+.
T Consensus 589 ~~~~~e~~~~~~~~-~~~~---~~~-~~~l~~gDev~~~t-~e-~G~~~~i~a~~~e~~v~~g~~kv~V~~~~~~~~~ 659 (753)
T COG1193 589 DAGAFESTLKDKKN-KVLP---EAK-KRKLKLGDEVEVIT-GE-PGAVVKIIAGILEALVQSGILKVIVSHLDLEIIK 659 (753)
T ss_pred HHHHHHHHhhhhhc-ccCc---ccc-ccCceecceeEeec-CC-ccceeeeeccCceeEEecceeEEEEehhHHHHhc
Confidence 11111111110000 0011 111 35689999999999 88 5999999877789999999999999999998877
|
|
| >TIGR01070 mutS1 DNA mismatch repair protein MutS | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-71 Score=657.14 Aligned_cols=484 Identities=23% Similarity=0.325 Sum_probs=434.0
Q ss_pred CchHHHhccCCCCCCCHHHHHHHHHHHHHHHH--HH-HcCCCCCCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q 004609 1 MGHAVVQKAQIPFGKSLEESQKLLNQTSAALA--MM-QSQPLDLSTIEDIAGILNSAVSGQLLSPSEICAVRRTLRAVNN 77 (742)
Q Consensus 1 mG~~~~~~~~l~~~~~~~~~~~~l~~~~e~~~--~~-~~~~~~l~~~~di~~~l~r~~~g~~l~~~el~~i~~~l~~~~~ 77 (742)
||+|++|+|.++|..|.++|++||+.++++.. .+ .....+|++++|+++++.|+..|. .++.||..++++|..+..
T Consensus 284 ~G~RlLr~wl~~Pl~d~~~I~~Rld~Ve~l~~~~~l~~~l~~~L~~i~Dlerll~ri~~~~-~~~~dl~~l~~~l~~~~~ 362 (840)
T TIGR01070 284 MGSRLLKRWLHRPLRDREVLEARQDTVEVLLRHFFLREGLRPLLKEVGDLERLAARVALGN-ARPRDLARLRTSLEQLPE 362 (840)
T ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHhCHHHHHHHHHHhccCcCHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999987 33 345668999999999999999886 599999999999999999
Q ss_pred HHHHHHHhhhccCCccccchhHHHHHhcCCChhHHHHHHhhhhcc-------CCCcccCCcCHHHHHHHHHHHHHHHHHH
Q 004609 78 VWKKLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEKIGFCIDC-------KLLIILDRASEDLELIRAERKRNMENLD 150 (742)
Q Consensus 78 l~~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~l~~~I~~~id~-------~~~~i~d~aS~~L~~iR~~~~~~~~~l~ 150 (742)
++.++... ..+.+..+...+..+.++.+.|+++|++ +++.|+|++|++|+++|+..+...+.+.
T Consensus 363 l~~~l~~~---------~~~~l~~l~~~l~~~~~l~~~i~~~i~~~~~~~~~~~~~I~~g~~~~Ld~lr~~~~~~~~~l~ 433 (840)
T TIGR01070 363 LRALLEEL---------EGPTLQALAAQIDDFSELLELLEAALIENPPLVVRDGGLIREGYDEELDELRAASREGTDYLA 433 (840)
T ss_pred HHHHHHhc---------CcHHHHHHHHhcccHHHHHHHHHHHHhcCCccccccCCeeCCCCCHHHHHHHHHHHHHHHHHH
Confidence 99998642 1356777788888999999999999973 3467999999999999998776655555
Q ss_pred HHHHHHHHHHHHhcCCCCcccccc-cCcEEEEEccccccCCCCcEEEEEccCCcEEEeccchhhhhhhHHHHHhHHHHHH
Q 004609 151 SLLKKVAAQIFQAGGIDKPLITKR-RSRMCVGIKASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAE 229 (742)
Q Consensus 151 ~~l~~~~~~~~~~~~~~~~~it~r-~~r~vi~v~~~~~~~~~~g~v~~~s~sg~t~~~ep~~~v~lnn~~~~l~~~e~~e 229 (742)
.+.+ ++....++....+.+. ..||+|+|+..+...+|+.|+|.+|.+|.++|++|. ++++++++.++..++..+
T Consensus 434 ~l~~----~~~~~~~i~~lk~~~~~~~gy~iev~~~~~~~vp~~~i~~~s~~~~~rf~tpe-l~~l~~~l~~~~~~~~~~ 508 (840)
T TIGR01070 434 RLEA----RERERTGIPTLKVGYNAVFGYYIEVTRGQLHLVPAHYRRRQTLKNAERYITPE-LKEKEDKVLEAEGKILAL 508 (840)
T ss_pred HHHH----HHHHHcCCCceEEEEecCceEEEEEehhhhhcCCcceEEEEeccCceEEcCHH-HHHHHHHHHHHHHHHHHH
Confidence 4433 3334456665555553 458999999999999996799999999999999997 899999999999999999
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHhCCccceeecCCCCCCCcceEEEccccccccccccccccc
Q 004609 230 ETAILSLLTAEIAKSEREIKYLMDRVLEIDLAFARAGFAQWMDGVCPILSSQSHVSFDSSINIEGIKHPLLLGSSLRSLS 309 (742)
Q Consensus 230 e~~Il~~L~~~i~~~~~~l~~~~~~l~~lD~~~A~a~~a~~~~~~~P~~~~~~~~~~~~~i~l~~~rHPll~~~~~~~~~ 309 (742)
+.+|+.+|...+..+.+.|..+.+.++.||+++|+|.+|.+++||+|.|++++ .|.|++||||+++.. ..
T Consensus 509 e~~i~~~L~~~i~~~~~~l~~~~~~la~lD~l~s~A~~a~~~~~~~P~~~~~~------~i~i~~~RHP~le~~-~~--- 578 (840)
T TIGR01070 509 EKELFEELRELLKKYLEALQEAARALAELDVLANLAEVAETLHYTRPRFGDDP------QLRIREGRHPVVEQV-LR--- 578 (840)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCceecCCC------cEEEEeeECHHHHhc-cC---
Confidence 99999999999999999999999999999999999999999999999998753 699999999999421 10
Q ss_pred cccCCCCCCCCCCCCCcEEEeeeeeecCCceecccccccCCceEEEEEeCCCCCcchHHhhHHhhhhhhhhceeecCCCC
Q 004609 310 AASSNSNPLKSDVENSEMTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNH 389 (742)
Q Consensus 310 ~~~~~~~~~~~~~~~~~l~~~nl~~~y~~~~v~i~l~l~~g~~~~~ItGpNGsGKSTlLK~lGli~~maq~G~~vPa~~~ 389 (742)
+.+||+|+.+..+.++++|||||||||||+||++|++++|||+|+|||+..
T Consensus 579 ----------------------------~~~VpNdi~l~~~~~~~iITGPNmgGKSt~lrqvali~imAq~G~~VPA~~- 629 (840)
T TIGR01070 579 ----------------------------TPFVPNDLEMAHNRRMLLITGPNMGGKSTYMRQTALIALLAQIGSFVPAES- 629 (840)
T ss_pred ----------------------------CCeEeeeeecCCCccEEEEECCCCCCchHHHHHHHHHHHHHhcCCCccchh-
Confidence 137899999987667999999999999999999999999999999999996
Q ss_pred CCchHHHHHHHHcCCccccccccccchHHHHHHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEE
Q 004609 390 PRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAV 468 (742)
Q Consensus 390 ~~i~~~d~il~~ig~~~~~~~~lstfSgg~krl~~~~~l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~-~~~~vl 468 (742)
+.+++||+||+++|..|++..+.|||+.+|.+++.|+..+++++||||||+|+|||+.+|.+|++++++++.+ .++.+|
T Consensus 630 a~i~~~D~Iftrig~~d~i~~g~STF~~Em~e~a~IL~~at~~sLvllDE~GrGT~~~dg~aia~ai~e~l~~~~~~~~~ 709 (840)
T TIGR01070 630 AELPLFDRIFTRIGASDDLASGRSTFMVEMTEAANILHNATENSLVLFDEIGRGTSTYDGLALAWAIAEYLHEHIRAKTL 709 (840)
T ss_pred eEeccccEEEEecCcccchhcCcchHHHHHHHHHHHHhhCCCCEEEEEccCCCCCChhHHHHHHHHHHHHHHhcCCCEEE
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999998 788999
Q ss_pred EEecChhhhhhcccccceecceEEE--ecCccccchhhhcCCCCCchHHHHHHHCCCCHHHHHHHHHHHHHh
Q 004609 469 VTTHYADLSCLKDKDTRFENAATEF--SLETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVERL 538 (742)
Q Consensus 469 itTH~~~l~~~a~~~~~i~~g~~~~--~~~~l~~~y~l~~g~~~~s~a~~ia~~~gl~~~ii~~A~~~~~~~ 538 (742)
++|||+++..++.....+.|.+|.+ +.+++.|+|++..|.++.|||+++|+++|+|++|+++|++.+..+
T Consensus 710 ~~TH~~eL~~l~~~~~~v~n~~~~~~~~~~~l~flYkl~~G~~~~Sygi~VA~laGlP~~VI~rA~~il~~l 781 (840)
T TIGR01070 710 FATHYFELTALEESLPGLKNVHVAALEHNGTIVFLHQVLPGPASKSYGLAVAALAGLPKEVIARARQILTQL 781 (840)
T ss_pred EEcCchHHHHHhhhCCCeEEEEEEEEEECCcEEEEEEECCCCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 9999999999998888899999987 567899999999999999999999999999999999999988654
|
|
| >PRK05399 DNA mismatch repair protein MutS; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-68 Score=636.42 Aligned_cols=485 Identities=24% Similarity=0.347 Sum_probs=432.0
Q ss_pred CchHHHhccCCCCCCCHHHHHHHHHHHHHHHH---HHHcCCCCCCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q 004609 1 MGHAVVQKAQIPFGKSLEESQKLLNQTSAALA---MMQSQPLDLSTIEDIAGILNSAVSGQLLSPSEICAVRRTLRAVNN 77 (742)
Q Consensus 1 mG~~~~~~~~l~~~~~~~~~~~~l~~~~e~~~---~~~~~~~~l~~~~di~~~l~r~~~g~~l~~~el~~i~~~l~~~~~ 77 (742)
||+|++|+|.+.|..|.++|++||+.++++.. +.......|++++|+++++.|+..|. .++.||..++.+|..+..
T Consensus 298 ~G~RlLr~wl~~Pl~d~~~I~~R~d~Ve~l~~~~~~~~~l~~~L~~i~Dlerll~ri~~~~-~~~~dl~~l~~~l~~~~~ 376 (854)
T PRK05399 298 MGGRLLRRWLHRPLRDREAIEARLDAVEELLEDPLLREDLRELLKGVYDLERLLSRIALGR-ANPRDLAALRDSLEALPE 376 (854)
T ss_pred HHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHhCHHHHHHHHHHHhcCCCHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999986 22344558999999999999998887 589999999999999999
Q ss_pred HHHHHHHhhhccCCccccchhHHHHHhcCCChhHHHHHHhhhhccC-------CCcccCCcCHHHHHHHHHHHHHHHHHH
Q 004609 78 VWKKLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEKIGFCIDCK-------LLIILDRASEDLELIRAERKRNMENLD 150 (742)
Q Consensus 78 l~~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~l~~~I~~~id~~-------~~~i~d~aS~~L~~iR~~~~~~~~~l~ 150 (742)
++..+... ..+.|..+...+..+.++.+.|.++|+++ ++.|+|++|++|+++|+.+++..+.+.
T Consensus 377 l~~~l~~~---------~~~~l~~l~~~l~~~~~l~~~i~~~i~~~~~~~~~~~~~i~~g~~~~Ld~lr~~~~~~~~~l~ 447 (854)
T PRK05399 377 LKELLAEL---------DSPLLAELAEQLDPLEELADLLERAIVEEPPLLIRDGGVIADGYDAELDELRALSDNGKDWLA 447 (854)
T ss_pred HHHHHHhc---------CcHHHHHHHhhcccHHHHHHHHHHHHccCCchhcccCCEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 99988642 13557777777888999999999999862 457999999999999999887777666
Q ss_pred HHHHHHHHHHHHhcCCCCccccccc-CcEEEEEccccccCCCCcEEEEEccCCcEEEeccchhhhhhhHHHHHhHHHHHH
Q 004609 151 SLLKKVAAQIFQAGGIDKPLITKRR-SRMCVGIKASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAE 229 (742)
Q Consensus 151 ~~l~~~~~~~~~~~~~~~~~it~r~-~r~vi~v~~~~~~~~~~g~v~~~s~sg~t~~~ep~~~v~lnn~~~~l~~~e~~e 229 (742)
.+..+. ....++....+.+.+ .+|+|+|+..+...+|++|++.+|.+|.++|++|. +.++++++.++..++..+
T Consensus 448 ~~~~~~----~~~~~~~~l~~~~~~~~gy~iev~~~~~~~vp~~~~~~~s~~~~~rf~t~~-l~~l~~~l~~~~~~~~~~ 522 (854)
T PRK05399 448 ELEARE----RERTGISSLKVGYNKVFGYYIEVTKANLDKVPEDYIRRQTLKNAERYITPE-LKELEDKILSAEEKALAL 522 (854)
T ss_pred HHHHHH----HHHcCCCceEEEEcCceeEEEEEEcchhhhCChhhhheeeccCeEEEECHH-HHHHHHHHHHHHHHHHHH
Confidence 665443 333455544444333 36999999999889997799999999999999997 999999999999999999
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHhCCccceeecCCCCCCCcceEEEccccccccccccccccc
Q 004609 230 ETAILSLLTAEIAKSEREIKYLMDRVLEIDLAFARAGFAQWMDGVCPILSSQSHVSFDSSINIEGIKHPLLLGSSLRSLS 309 (742)
Q Consensus 230 e~~Il~~L~~~i~~~~~~l~~~~~~l~~lD~~~A~a~~a~~~~~~~P~~~~~~~~~~~~~i~l~~~rHPll~~~~~~~~~ 309 (742)
+.+|+.+|...+.++...|..+.+++++||+++|+|.+|.+++||+|.|++++ .+.|+++|||+++.. +..
T Consensus 523 e~~i~~~l~~~i~~~~~~l~~~~~~la~lD~l~s~A~~a~~~~~~~P~~~~~~------~l~i~~~rHP~le~~-~~~-- 593 (854)
T PRK05399 523 EYELFEELREEVAEHIERLQKLAKALAELDVLASLAEVAEENNYVRPEFTDDP------GIDIEEGRHPVVEQV-LGG-- 593 (854)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCccccEEeCCC------CEEEEeccCcEEecc-cCC--
Confidence 99999999999999999999999999999999999999999999999998753 699999999999531 100
Q ss_pred cccCCCCCCCCCCCCCcEEEeeeeeecCCceecccccccCCceEEEEEeCCCCCcchHHhhHHhhhhhhhhceeecCCCC
Q 004609 310 AASSNSNPLKSDVENSEMTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNH 389 (742)
Q Consensus 310 ~~~~~~~~~~~~~~~~~l~~~nl~~~y~~~~v~i~l~l~~g~~~~~ItGpNGsGKSTlLK~lGli~~maq~G~~vPa~~~ 389 (742)
+.+||+|+.+..+.++++|||||||||||+||++|++++|||+|+|||+..
T Consensus 594 ----------------------------~~~vpnd~~l~~~~~~~iiTGpN~~GKSt~lr~v~l~~ilAq~G~~VPa~~- 644 (854)
T PRK05399 594 ----------------------------EPFVPNDCDLDEERRLLLITGPNMAGKSTYMRQVALIVLLAQIGSFVPAES- 644 (854)
T ss_pred ----------------------------CceEecceeeCCCCcEEEEECCCCCCcHHHHHHHHHHHHHHhcCCceeccc-
Confidence 137899999986658999999999999999999999999999999999996
Q ss_pred CCchHHHHHHHHcCCccccccccccchHHHHHHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcC-CcEEE
Q 004609 390 PRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDR-VGLAV 468 (742)
Q Consensus 390 ~~i~~~d~il~~ig~~~~~~~~lstfSgg~krl~~~~~l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~-~~~vl 468 (742)
+.+++||.||+++|..|++..+.|||+.+|.+++.++..+++++||||||||+||++.+|.++++++++++.+. ++++|
T Consensus 645 a~i~~~d~I~triga~d~i~~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg~aia~aile~l~~~~~~~~l 724 (854)
T PRK05399 645 ARIGIVDRIFTRIGASDDLASGRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDGLSIAWAVAEYLHDKIGAKTL 724 (854)
T ss_pred eEecccCeeeeccCcccccccCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchhHHHHHHHHHHHHhcCCceEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999987 58999
Q ss_pred EEecChhhhhhcccccceecceEEEec--CccccchhhhcCCCCCchHHHHHHHCCCCHHHHHHHHHHHHHh
Q 004609 469 VTTHYADLSCLKDKDTRFENAATEFSL--ETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVERL 538 (742)
Q Consensus 469 itTH~~~l~~~a~~~~~i~~g~~~~~~--~~l~~~y~l~~g~~~~s~a~~ia~~~gl~~~ii~~A~~~~~~~ 538 (742)
++|||+++..++++...+.|.+|.++. +++.|+|++..|.++.|||+++|+++|+|++|+++|++.+..+
T Consensus 725 ~aTH~~el~~l~~~~~~v~n~~m~~~~~~~~l~flYkl~~G~~~~SyGi~VA~laGlP~~VI~rA~~i~~~l 796 (854)
T PRK05399 725 FATHYHELTELEEKLPGVKNVHVAVKEHGGDIVFLHKVVPGAADKSYGIHVAKLAGLPASVIKRAREILAQL 796 (854)
T ss_pred EEechHHHHHHhhhcCCeEEEEEEEEEeCCeEEEEEEeCcCCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 999999999999988899999998875 6899999999999999999999999999999999999987654
|
|
| >COG0249 MutS Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-63 Score=582.66 Aligned_cols=489 Identities=24% Similarity=0.351 Sum_probs=427.5
Q ss_pred CchHHHhccCCCCCCCHHHHHHHHHHHHHHHHHH---HcCCCCCCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q 004609 1 MGHAVVQKAQIPFGKSLEESQKLLNQTSAALAMM---QSQPLDLSTIEDIAGILNSAVSGQLLSPSEICAVRRTLRAVNN 77 (742)
Q Consensus 1 mG~~~~~~~~l~~~~~~~~~~~~l~~~~e~~~~~---~~~~~~l~~~~di~~~l~r~~~g~~l~~~el~~i~~~l~~~~~ 77 (742)
||+|+++.|..+|..|.++|+.+|+-++++.... +.....|+.++|+++++.|+..|.. ++.||..+++++..+..
T Consensus 296 mG~RlL~~wl~~PL~~~~~I~~Rld~Ve~l~~~~~l~~~L~~~L~~v~DleRl~~Rl~~~~~-~~rDl~~l~~~l~~~~~ 374 (843)
T COG0249 296 MGSRLLKRWLLQPLLDKEEIEERLDAVEELKDNPELREKLREMLKKVPDLERLLSRLSLGRA-SPRDLLRLRDSLEKIPE 374 (843)
T ss_pred hhHHHHHHHhhCcccCHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcCcCHHHHHHHHHcCCC-ChhhHHHHHHHHHHHHH
Confidence 8999999999999999999999999999988742 3445578999999999999999996 89999999999999999
Q ss_pred HHHHHHHhhhccCCccccchhHHHHHhcCCChhHHHHHHhhhhccCC------CcccCCcCHHHHHHHHHHHHHHHHHHH
Q 004609 78 VWKKLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEKIGFCIDCKL------LIILDRASEDLELIRAERKRNMENLDS 151 (742)
Q Consensus 78 l~~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~l~~~I~~~id~~~------~~i~d~aS~~L~~iR~~~~~~~~~l~~ 151 (742)
++..+..... ...+..+...+..++.+.++...+..+|.++. +.|+++++++|+++|...+...+.+
T Consensus 375 i~~~l~~~~~-----~~~l~~~~~~i~~~~~~~e~~~ll~~~i~~~~~~~~~~~ii~~g~~~eLd~lr~~~~~~~~~i-- 447 (843)
T COG0249 375 IFKLLSSLKS-----ESDLLLLLEDIESLDYLAELLELLETAINEDPPLAVRDGIIKEGYNIELDELRDLLNNAKEWI-- 447 (843)
T ss_pred HHHHHhcccc-----chhhhHHhhhhhccccHHHHHHHHHHHhhhcchhhcchhHHhcchhHHHHHHHHHHHHHHHHH--
Confidence 9999875421 11122333322244445688888888887543 3689999999999999877544444
Q ss_pred HHHHHHHHHHHhcCCCCcccccccC-cEEEEEccccccCCCCcEEEEEccCCcEEEeccchhhhhhhHHHHHhHHHHHHH
Q 004609 152 LLKKVAAQIFQAGGIDKPLITKRRS-RMCVGIKASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEE 230 (742)
Q Consensus 152 ~l~~~~~~~~~~~~~~~~~it~r~~-r~vi~v~~~~~~~~~~g~v~~~s~sg~t~~~ep~~~v~lnn~~~~l~~~e~~ee 230 (742)
.+...+.....|+....+.+++. +|+|.|+......+|.+|++.++.+++.+|++|. +.+++.++..++.....+|
T Consensus 448 --~~le~~~r~~~gi~slki~~n~v~Gy~ievt~~~~~~~p~~~ir~qt~kn~~rf~t~e-l~~~e~~i~~a~~~i~~lE 524 (843)
T COG0249 448 --AKLELEERERTGIKSLKIKYNKVYGYYIEVTKSNAKLVPDDYIRRQTLKNAERFTTPE-LKELEEKLLDAEEKILALE 524 (843)
T ss_pred --HHHHHHHHHhcCCchhhhhhhccceeEEEechhccccCchHHHHHHHHhcceEecCHH-HHHHHHHHHHHHHHHHHHH
Confidence 44444455667888877877775 7999999999999997899999999999999995 7788888888888888899
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHhCCccceeecCCCCCCCcceEEEcccccccccccccccccc
Q 004609 231 TAILSLLTAEIAKSEREIKYLMDRVLEIDLAFARAGFAQWMDGVCPILSSQSHVSFDSSINIEGIKHPLLLGSSLRSLSA 310 (742)
Q Consensus 231 ~~Il~~L~~~i~~~~~~l~~~~~~l~~lD~~~A~a~~a~~~~~~~P~~~~~~~~~~~~~i~l~~~rHPll~~~~~~~~~~ 310 (742)
.+++.++.+.+..|.+.|+.+...+++||+++++|.+|...+||+|.|++.. .+.|+++|||+++. .+.+
T Consensus 525 ~~l~~~~~~~i~~~~~~l~~~a~aLa~lD~l~slA~~a~~~~y~rP~~~~~~------~l~i~~gRHPvvE~-~~~~--- 594 (843)
T COG0249 525 YELFDELREKILAHINELQALAKALAELDVLSSLAEIAAEQNYVRPEFVDSN------DLEIKEGRHPVVEA-VLDN--- 594 (843)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCceecCCC------CEEEEecCcchhhh-hccC---
Confidence 9999999999999999999999999999999999999999999999999864 39999999999953 2211
Q ss_pred ccCCCCCCCCCCCCCcEEEeeeeeecCCceecccccccCCceEEEEEeCCCCCcchHHhhHHhhhhhhhhceeecCCCCC
Q 004609 311 ASSNSNPLKSDVENSEMTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHP 390 (742)
Q Consensus 311 ~~~~~~~~~~~~~~~~l~~~nl~~~y~~~~v~i~l~l~~g~~~~~ItGpNGsGKSTlLK~lGli~~maq~G~~vPa~~~~ 390 (742)
.+||+|+.+.++.++++|||||||||||+||++|++++|||+|+||||+. +
T Consensus 595 ----------------------------~fVpNd~~L~~~~~i~lITGPNM~GKSTylRQvali~imAQiGsfVPA~~-A 645 (843)
T COG0249 595 ----------------------------GFVPNDIDLSGNRRIILITGPNMGGKSTYLRQVALIVILAQIGSFVPAEK-A 645 (843)
T ss_pred ----------------------------CcccCceeeCCCceEEEEECCCCCccHHHHHHHHHHHHHHHcCCCeeHHH-c
Confidence 26899999998559999999999999999999999999999999999996 8
Q ss_pred CchHHHHHHHHcCCccccccccccchHHHHHHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcC-CcEEEE
Q 004609 391 RLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDR-VGLAVV 469 (742)
Q Consensus 391 ~i~~~d~il~~ig~~~~~~~~lstfSgg~krl~~~~~l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~-~~~vli 469 (742)
.+++||+||++||..|++.++-|||+.+|.+++.|+..+++.+||||||.|+||++.+|.+|++|+++|+++. ++.+||
T Consensus 646 ~i~ivD~IfTRiGa~DDL~~G~STFMvEM~Eta~IL~~AT~~SLvilDEiGRGTsT~DGlaIA~Av~eyL~~~~~~~tLF 725 (843)
T COG0249 646 RIGIVDRIFTRIGAADDLASGRSTFMVEMLETANILDNATERSLVILDEIGRGTSTYDGLAIAWAVLEYLHEKIGCRTLF 725 (843)
T ss_pred cccccceeeecccccchhhccccHHHHHHHHHHHHHHhCCCCcEEEEecccCCCCcchhHHHHHHHHHHHHhccCceEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999995 899999
Q ss_pred EecChhhhhhcccccceecceEEE--ecCccccchhhhcCCCCCchHHHHHHHCCCCHHHHHHHHHHHHHhc
Q 004609 470 TTHYADLSCLKDKDTRFENAATEF--SLETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVERLR 539 (742)
Q Consensus 470 tTH~~~l~~~a~~~~~i~~g~~~~--~~~~l~~~y~l~~g~~~~s~a~~ia~~~gl~~~ii~~A~~~~~~~~ 539 (742)
+|||+++..+......+.|.+|.. ..+++.++|++..|.+..|||+++|+.+|+|.+|+++|++.+.++.
T Consensus 726 ATHy~ELt~l~~~~~~v~N~h~~~~e~~~~i~Fl~kv~~G~a~~SyGi~VAklaGlP~~Vi~rA~~il~~le 797 (843)
T COG0249 726 ATHYHELTELEEKLPQVKNYHMSAVEEGGDITFLYKVKPGIADKSYGIHVAKLAGLPEEVIERAREILAELE 797 (843)
T ss_pred eccHHHHHHhhhcccccceeEEEEEEcCCceEEEEEeccCCCCccHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 999999999999888888887754 3456889999999999999999999999999999999999887653
|
|
| >KOG0218 consensus Mismatch repair MSH3 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-48 Score=427.98 Aligned_cols=494 Identities=21% Similarity=0.294 Sum_probs=361.9
Q ss_pred CchHHHhccCCCCCCCHHHHHHHHHHHHHHHHHH------HcCCCCCCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 004609 1 MGHAVVQKAQIPFGKSLEESQKLLNQTSAALAMM------QSQPLDLSTIEDIAGILNSAVSGQLLSPSEICAVRRTLRA 74 (742)
Q Consensus 1 mG~~~~~~~~l~~~~~~~~~~~~l~~~~e~~~~~------~~~~~~l~~~~di~~~l~r~~~g~~l~~~el~~i~~~l~~ 74 (742)
.|.|.+|.|...|.-|...|..+|+.++|.-... +.-.--+..++||.+.+.|+--|.+-+.+|++.+...+..
T Consensus 494 fG~RmLr~WvtkPLvd~~~I~eRLDAVeeitshssnS~vf~si~~~l~rlpDl~rgL~rIy~~tCtp~~eff~vlk~iy~ 573 (1070)
T KOG0218|consen 494 FGLRMLREWVTKPLVDVHQIEERLDAVEEITSHSSNSIVFESINQMLNRLPDLLRGLNRIYYGTCTPRKEFFFVLKQIYS 573 (1070)
T ss_pred HHHHHHHHHHhcccccHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhCcHhHhhHHHHhcccCCcHHHHHHHHHHHHH
Confidence 3899999999999999999999999999873211 1111125678999999999988886444898887776654
Q ss_pred HHHHH----HHHHHhhhccCCccccchhHHHHHhcC------CChhHHHHHHhhhhccCCC---cccC--------CcCH
Q 004609 75 VNNVW----KKLTEAAELDGDSLQRYSPLLELLKNC------NFLTELEEKIGFCIDCKLL---IILD--------RASE 133 (742)
Q Consensus 75 ~~~l~----~~l~~~~~~~~~~~~~~~~l~~l~~~l------~~~~~l~~~I~~~id~~~~---~i~d--------~aS~ 133 (742)
+..-. .++.......+.....-+.|+.++..+ ..++.+...++..--..+. .++| ..-.
T Consensus 574 a~s~fq~~~~~~~~~~~s~~~s~~qS~LLrrlisel~~p~~~s~~~hfL~mln~~aa~~gnk~d~fkd~snfpl~~e~~d 653 (1070)
T KOG0218|consen 574 AVSHFQMHQSYLEHFKSSDGRSGKQSPLLRRLISELNEPLSTSQLPHFLTMLNVSAAMEGNKDDQFKDFSNFPLYDESED 653 (1070)
T ss_pred HHHHHHHHhhhhhhhccccccchhccHHHHHHHHHhcCccccccHHHHHHHhhHHHHhhCChHHhhhhhccCcchhhhhh
Confidence 43322 222211000111122334566666554 2333444433321111110 1222 1111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccCcEEEEEccccccCCCCcEEEEEccCCcEEEeccchhh
Q 004609 134 DLELIRAERKRNMENLDSLLKKVAAQIFQAGGIDKPLITKRRSRMCVGIKASHKYLLPDGIALNVSSSGATYFMEPKGAV 213 (742)
Q Consensus 134 ~L~~iR~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~it~r~~r~vi~v~~~~~~~~~~g~v~~~s~sg~t~~~ep~~~v 213 (742)
-...||.. +-.+..+..-|.+. ++++....++ +.+.-+.-|+|.|+...-.++|..||--.|.....+|..|. ++
T Consensus 654 i~~virE~-~ms~~~~~~hLaei-Rk~Lk~pnle--f~~vsgv~flIEvkns~~kkiP~dWiKvnsTk~vsRfhtP~-iq 728 (1070)
T KOG0218|consen 654 IIKVIRES-EMSRSQLKEHLAEI-RKYLKRPNLE--FRQVSGVDFLIEVKNSQIKKIPDDWIKVNSTKMVSRFHTPR-IQ 728 (1070)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHH-HHHhcCCCce--eEEecCeeEEEEecccccccCCccceeeccceeeeecCCHH-HH
Confidence 11122211 11111122222222 2344322211 23333448999999888888998999888888888898886 55
Q ss_pred hhhhHHHHHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHhCCccceeecCCCCCCCcceEEEc
Q 004609 214 EFNNMEVRLSNSEIAEETAILSLLTAEIAKSEREIKYLMDRVLEIDLAFARAGFAQWMDGVCPILSSQSHVSFDSSINIE 293 (742)
Q Consensus 214 ~lnn~~~~l~~~e~~ee~~Il~~L~~~i~~~~~~l~~~~~~l~~lD~~~A~a~~a~~~~~~~P~~~~~~~~~~~~~i~l~ 293 (742)
.+-.++......-..+-..+.+..-.++.+|..+++.+...+|.+||++++|+.+...|||||+|+++. ..|.|+
T Consensus 729 ~~l~eL~~~~e~L~i~sea~~~sFL~kiSehYtelrkat~~LatlDCi~SlA~~s~n~nYvRPtfvd~~-----~eI~ik 803 (1070)
T KOG0218|consen 729 KLLQELEYYKELLIIESEAQYKSFLNKISEHYTELRKATLNLATLDCILSLAATSCNVNYVRPTFVDGQ-----QEIIIK 803 (1070)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccCcccccch-----hhhhhh
Confidence 555555444333333445677788888899999999999999999999999999999999999999852 369999
Q ss_pred cccccccccccccccccccCCCCCCCCCCCCCcEEEeeeeeecCCceecccccccC-CceEEEEEeCCCCCcchHHhhHH
Q 004609 294 GIKHPLLLGSSLRSLSAASSNSNPLKSDVENSEMTVGSLSKGISDFPVPIDIKVEC-ETRVVVITGPNTGGKTASMKTLG 372 (742)
Q Consensus 294 ~~rHPll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~nl~~~y~~~~v~i~l~l~~-g~~~~~ItGpNGsGKSTlLK~lG 372 (742)
+||||+++ ..+. +.+||+|+.+.+ |.++.+||||||||||.++|+++
T Consensus 804 ngRhPvIe-~Ll~-------------------------------d~fVPNdi~ls~egerc~IITGPNMGGKSsyIrQvA 851 (1070)
T KOG0218|consen 804 NGRHPVIE-SLLV-------------------------------DYFVPNDIMLSPEGERCNIITGPNMGGKSSYIRQVA 851 (1070)
T ss_pred cCCCchHH-HHhh-------------------------------hccCCCcceecCCCceEEEEeCCCCCCchHHHHHHH
Confidence 99999984 2221 136888888754 45899999999999999999999
Q ss_pred hhhhhhhhceeecCCCCCCchHHHHHHHHcCCccccccccccchHHHHHHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHH
Q 004609 373 LASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVAL 452 (742)
Q Consensus 373 li~~maq~G~~vPa~~~~~i~~~d~il~~ig~~~~~~~~lstfSgg~krl~~~~~l~~~~~LlLLDEp~~glDp~~~~aL 452 (742)
|+.+|||.|+|||++. +.+++||.||++||..|++..+-|||+.+|.-...++..++..++|||||.|+||...+|.+|
T Consensus 852 LitIMAQiGsfVPAee-a~l~IfdgvltRmGAsDnI~~grSTFm~Emldt~eil~kat~~SlvilDElGRGTsThDGiAI 930 (1070)
T KOG0218|consen 852 LITIMAQIGSFVPAEE-ARLSIFDGVLTRMGASDNIINGRSTFMVEMLDTLEILKKATKRSLVILDELGRGTSTHDGIAI 930 (1070)
T ss_pred HHHHHHHhcCccchHH-hhhhHHhhHHHhhccccccccchhHHHHHHHHHHHHHHhcccchhhhhHhhcCCCccccchhH
Confidence 9999999999999997 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcC-CcEEEEEecChhhhhhcccccc-eecceEEE---------ecCccccchhhhcCCCCCchHHHHHHHC
Q 004609 453 ATSILQYLRDR-VGLAVVTTHYADLSCLKDKDTR-FENAATEF---------SLETLRPTYRILWGSTGDSNALNIAKSI 521 (742)
Q Consensus 453 ~~all~~l~~~-~~~vlitTH~~~l~~~a~~~~~-i~~g~~~~---------~~~~l~~~y~l~~g~~~~s~a~~ia~~~ 521 (742)
+.|.++|+.+. .+.++|||||..+..+...... +.|.+|.| |...+.++|++..|.+.+||++++|+.+
T Consensus 931 sYAtL~yf~~~~k~l~LFvTHfP~l~eie~~f~gqv~nyHmgyl~sedk~~~d~dsVtfLYklvrGlasrSyGlnVAklA 1010 (1070)
T KOG0218|consen 931 SYATLKYFSELSKCLILFVTHFPMLGEIESGFPGQVRNYHMGYLESEDKTGEDWDSVTFLYKLVRGLASRSYGLNVAKLA 1010 (1070)
T ss_pred HHHHHHHHHHhhceeEEeeecCcchhhhhcCCCccccceeeeeeeeccccCCCchhhhhHHHHhhhhhhccccccHHHHh
Confidence 99999999764 5689999999998877654443 55556654 3456778999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHH
Q 004609 522 GFDRKIIQRAQKLVER 537 (742)
Q Consensus 522 gl~~~ii~~A~~~~~~ 537 (742)
++|.+++.+|-...+.
T Consensus 1011 ~ip~sii~rA~siSee 1026 (1070)
T KOG0218|consen 1011 RIPKSIINRAFSISEE 1026 (1070)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999876543
|
|
| >KOG0219 consensus Mismatch repair ATPase MSH2 (MutS family) [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-44 Score=406.24 Aligned_cols=487 Identities=20% Similarity=0.285 Sum_probs=388.8
Q ss_pred CchHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHH---c-CCCCCCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 004609 1 MGHAVVQKAQIPFGKSLEESQKLLNQTSAALAMMQ---S-QPLDLSTIEDIAGILNSAVSGQLLSPSEICAVRRTLRAVN 76 (742)
Q Consensus 1 mG~~~~~~~~l~~~~~~~~~~~~l~~~~e~~~~~~---~-~~~~l~~~~di~~~l~r~~~g~~l~~~el~~i~~~l~~~~ 76 (742)
||.++++.|.-+|..+...+..+++.+.+.+...+ . ..--+..++||.+++.++..+ +..+...+......+.
T Consensus 326 ~G~rll~~w~~qpL~~~~ri~~r~d~v~~l~~~~~~rq~L~~~lL~~~pdi~rl~~~l~~~---~L~d~~r~yq~~~~l~ 402 (902)
T KOG0219|consen 326 QGERLLRQWLKQPLRDIDRINERHDLVEALVEDAEIRQKLRDDLLRRIPDISRLARRLMKA---NLQDVNRIYQAAKLLP 402 (902)
T ss_pred cchhhhhhhhhcchHHHHHHHHHhhhHHHHHhhhHHHHHHHHHHhhcChhHHHhhhhhhhc---chHHHHHHHHHHHHhH
Confidence 69999999999999999999999999987665442 1 122367899999999998733 4577777777777666
Q ss_pred HHHHHHHHhhhccCCccccchhHHHHHhcCCChhHHHHHHhhhhcc-----CCCcccCCcCHHHHHHHHHHHHHHHHHHH
Q 004609 77 NVWKKLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEKIGFCIDC-----KLLIILDRASEDLELIRAERKRNMENLDS 151 (742)
Q Consensus 77 ~l~~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~l~~~I~~~id~-----~~~~i~d~aS~~L~~iR~~~~~~~~~l~~ 151 (742)
.+...|..... ....+ -..+ +......+..+...+..++|. +...|+.+++++|.+||+.+.+++.++.+
T Consensus 403 ~~~~~l~~~~~-~~~~l-l~~~---l~~~~~~~~kf~~~ve~t~D~da~ee~ey~VR~eFdeeL~eLrq~LdeL~~~m~~ 477 (902)
T KOG0219|consen 403 TVVQVLISLSE-SHNRL-LKSP---LTEHLKKLEKFQEMVETTVDLDAEEENEYRVRVDFDEELQELREKLDELERKMEK 477 (902)
T ss_pred HHHHHHHhhhh-hhhhh-hhhh---hhhhhhhHHHHHHHHHHHhhHhHHhcCcEEEecccCHHHHHHHHHHHHHHHHHHH
Confidence 66665543211 00000 0112 233445566677777777763 33579999999999999999999888888
Q ss_pred HHHHHHHHHHHhcCCCCcccccccC---cEEEEEccccccCC--CCcEEEEEccCCcEEEeccchhhhhhhHHHHHhHHH
Q 004609 152 LLKKVAAQIFQAGGIDKPLITKRRS---RMCVGIKASHKYLL--PDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSE 226 (742)
Q Consensus 152 ~l~~~~~~~~~~~~~~~~~it~r~~---r~vi~v~~~~~~~~--~~g~v~~~s~sg~t~~~ep~~~v~lnn~~~~l~~~e 226 (742)
..++....+-+.+ +..+..++. +||+.+.....+.+ ..++..-++..| .+|++....-.|||+...++.+.
T Consensus 478 ~hkrv~~dl~~D~---~kklkLe~~~~~G~~~RlTr~e~~~LR~~k~y~eLstqK~-GV~FTtk~L~slN~e~~~~qk~Y 553 (902)
T KOG0219|consen 478 LHKKVSADLGLDP---KKQLKLENSAQFGWYFRVTRKEEKVLRKKKNYTELSTQKG-GVKFTTKKLSSLNDEFMSLQKEY 553 (902)
T ss_pred HHHHHHhhcCCCc---ccceeeeccchhheeeeeeehhhhHhhccCCceEEEEeeC-cEEEEhhhHhhhHHHHHHHHHHH
Confidence 8777655433321 223444443 78887765332221 135544444555 67777777889999999999888
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhH--hCCccceeecCCCCCCCcceEEEcccccccccccc
Q 004609 227 IAEETAILSLLTAEIAKSEREIKYLMDRVLEIDLAFARAGFAQ--WMDGVCPILSSQSHVSFDSSINIEGIKHPLLLGSS 304 (742)
Q Consensus 227 ~~ee~~Il~~L~~~i~~~~~~l~~~~~~l~~lD~~~A~a~~a~--~~~~~~P~~~~~~~~~~~~~i~l~~~rHPll~~~~ 304 (742)
+..+..|.+++......|.+.|..+...+|+||++.|+|..|. -..|+||.+.+.+ ...+.++++|||+++...
T Consensus 554 ~~~Q~~ivrevikia~tY~Ppleal~~vlAhLDv~~SFa~~st~a~~pYvRP~~l~~g----s~rl~l~~~rHp~lE~Qd 629 (902)
T KOG0219|consen 554 DEAQNEIVREIIKIAATYTPPLEALNQVLAHLDVFVSFAHAATVAPIPYVRPKLLPLG----SKRLELKQSRHPVLEGQD 629 (902)
T ss_pred HHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhheeehhhcccCCCCccCccccccc----hhHHHHHhcccchhhccc
Confidence 8888999999999999999999999999999999999998886 5679999998764 236899999999996421
Q ss_pred ccccccccCCCCCCCCCCCCCcEEEeeeeeecCCceeccccccc--CCceEEEEEeCCCCCcchHHhhHHhhhhhhhhce
Q 004609 305 LRSLSAASSNSNPLKSDVENSEMTVGSLSKGISDFPVPIDIKVE--CETRVVVITGPNTGGKTASMKTLGLASLMSKAGL 382 (742)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~l~~~nl~~~y~~~~v~i~l~l~--~g~~~~~ItGpNGsGKSTlLK~lGli~~maq~G~ 382 (742)
. -.++|+|+.++ ++ ++++||||||+||||++|+.|.+.+|||+|+
T Consensus 630 ~--------------------------------~~fIpNdv~le~~~~-~~~IiTGpNMGGKSTyir~~Gvi~lmAQIGc 676 (902)
T KOG0219|consen 630 E--------------------------------IPFIPNDVVLEKGKC-RMLIITGPNMGGKSTYIRQVGVIVLMAQIGC 676 (902)
T ss_pred c--------------------------------CCCCCCccccccCCc-eEEEEeCCCcCccchhhhhhhHHHHHHHhCC
Confidence 0 02567777766 66 8999999999999999999999999999999
Q ss_pred eecCCCCCCchHHHHHHHHcCCccccccccccchHHHHHHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhc
Q 004609 383 YLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD 462 (742)
Q Consensus 383 ~vPa~~~~~i~~~d~il~~ig~~~~~~~~lstfSgg~krl~~~~~l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~ 462 (742)
|||++. +.++++|.|++++|.+++.-+++||||.+|--.+.|+.++++.+||++||||+||...+|-.+++|+-+++..
T Consensus 677 fVPce~-A~i~IvD~Il~RVGA~D~q~kG~STFM~Emleta~Ilr~at~~SliiiDELGRGTSt~DGfgiAwai~ehi~~ 755 (902)
T KOG0219|consen 677 FVPCES-ATISIVDGILTRVGAGDSQLKGISTFMAEMLETASILRRATKNSLIIIDELGRGTSTYDGFGIAWAIAEHIAT 755 (902)
T ss_pred ceehhh-cCCchhhHHHhhhccchhhhcchHHHHHHHHHHHHHHHhcCCCcEEEEeccCCCceeccCccHHHHHHHHHHH
Confidence 999996 8999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred C-CcEEEEEecChhhhhhcccccceecceEEEe--cCccccchhhhcCCCCCchHHHHHHHCCCCHHHHHHHHHHHHH
Q 004609 463 R-VGLAVVTTHYADLSCLKDKDTRFENAATEFS--LETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVER 537 (742)
Q Consensus 463 ~-~~~vlitTH~~~l~~~a~~~~~i~~g~~~~~--~~~l~~~y~l~~g~~~~s~a~~ia~~~gl~~~ii~~A~~~~~~ 537 (742)
+ |+..|++||++++..++.....+.|-+|... .+.+.-.|.+..|+++.|+++.+|+.+|+|+.+++-|+.+...
T Consensus 756 ki~cf~lfATHfhElt~lae~~~~vKn~h~~a~i~~~~~~llY~V~~Gv~d~SFGi~VA~~a~fp~~vie~A~~~~~e 833 (902)
T KOG0219|consen 756 KIGCFCLFATHFHELTKLAEQLPTVKNLHVTAQIENDDITLLYKVFEGVCDQSFGIHVAELVGFPEHVIEMAKQKAEE 833 (902)
T ss_pred HHhHhHHHHhHHHHHHhhhhhhhhhhhheeeeEecCcchhhHHHHhcccccCcchhhHHHHcCCChHHHHHHHHHHHH
Confidence 5 6788999999999999888888888777543 3567778999999999999999999999999999999987754
|
|
| >KOG0221 consensus Mismatch repair ATPase MSH5 (MutS family) [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-42 Score=375.64 Aligned_cols=486 Identities=21% Similarity=0.251 Sum_probs=378.6
Q ss_pred chHHHhccCCCCCCCHHHHHHHHHHHHHHHH-----HHHcCCCCCCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 004609 2 GHAVVQKAQIPFGKSLEESQKLLNQTSAALA-----MMQSQPLDLSTIEDIAGILNSAVSGQLLSPSEICAVRRTLRAVN 76 (742)
Q Consensus 2 G~~~~~~~~l~~~~~~~~~~~~l~~~~e~~~-----~~~~~~~~l~~~~di~~~l~r~~~g~~l~~~el~~i~~~l~~~~ 76 (742)
|++.+|.|...|.+|..++..+++-+.-+.. +.+..+-.++.++|+-.++++.+.|.. ...++--++.++.++-
T Consensus 281 g~k~Lr~Wf~nPttd~~~l~sR~~~i~~fl~~qNa~~~~~Ls~~lgr~k~~~~~~~~~~sg~t-~l~~W~~~~stv~~~~ 359 (849)
T KOG0221|consen 281 GEKLLRLWFTNPTTDLGELSSRLDVIQFFLLPQNADMAQMLSRLLGRIKNVPLILKRMKSGHT-KLSDWQVLYSTVYSAL 359 (849)
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhcccHHHHHHHHhcCCc-eechHHHHHHHHHHHH
Confidence 8899999999999999999999887663321 111123357889999999999998886 6789999999999998
Q ss_pred HHHHHHHHhhhccCCccccchhHHHHHhcCCChhHHHHHHhhhhccC------CCcccCCcCHHHHHHHHHHHHHHHHHH
Q 004609 77 NVWKKLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEKIGFCIDCK------LLIILDRASEDLELIRAERKRNMENLD 150 (742)
Q Consensus 77 ~l~~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~l~~~I~~~id~~------~~~i~d~aS~~L~~iR~~~~~~~~~l~ 150 (742)
.+++.+.+.+. ...++.... -.-+..+.++...+..+||-+ ...|..+.+|+|++.|+.+. .+.
T Consensus 360 ~i~~~~rslp~-----s~~~~~~~~-~~~~~~l~eia~~~g~vIdF~~S~~~~r~Tv~~giD~elDE~r~~y~----~lp 429 (849)
T KOG0221|consen 360 GIRDACRSLPQ-----SIQLFRDIA-QEFSDDLHEIASLIGKVIDFEGSLAENRFTVLPGIDPELDEKRRRYM----GLP 429 (849)
T ss_pred HHHHHHHhCcc-----chhhhhHHH-HHHHHHHHHHHHHhhheeccccccccceEEecCCCChHHHHHHHHHc----cch
Confidence 88888875421 111221100 011334566777777788743 34688999999999998754 566
Q ss_pred HHHHHHHHHHHHhcC---CCCcccccccCcEEEEEccccccCC----CCcEEEEEccCCcEEEeccchhhhhhhHHHHHh
Q 004609 151 SLLKKVAAQIFQAGG---IDKPLITKRRSRMCVGIKASHKYLL----PDGIALNVSSSGATYFMEPKGAVEFNNMEVRLS 223 (742)
Q Consensus 151 ~~l~~~~~~~~~~~~---~~~~~it~r~~r~vi~v~~~~~~~~----~~g~v~~~s~sg~t~~~ep~~~v~lnn~~~~l~ 223 (742)
.+|.+.+++....-+ .+-..|.+---+|++-|+.-+.-.. ..|+-.-. .|...+|+....+.+|.+.+.++.
T Consensus 430 ~~Lt~vAr~e~~~L~~~~psv~~VYIPliGfllsiprl~~~~~~~d~~~~~~~mf-~s~E~l~~rnart~eLD~~~GDIy 508 (849)
T KOG0221|consen 430 SFLTEVARKELENLDSRIPSVSVVYIPLIGFLLSIPRLPSMVEASDFENGLDFMF-LSEEKLHYRNARTKELDALLGDIY 508 (849)
T ss_pred HHHHHHHHHHHHhhCCCCCceeEEEeeceeeEEecccccchhhcCCcccchHHHh-cccceeEeecccHHhHHHHhhhHH
Confidence 677776655433211 2222333333467666554332211 11222222 234567777777899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHhCCccceeecCCCCCCCcceEEEccccccccccc
Q 004609 224 NSEIAEETAILSLLTAEIAKSEREIKYLMDRVLEIDLAFARAGFAQWMDGVCPILSSQSHVSFDSSINIEGIKHPLLLGS 303 (742)
Q Consensus 224 ~~e~~ee~~Il~~L~~~i~~~~~~l~~~~~~l~~lD~~~A~a~~a~~~~~~~P~~~~~~~~~~~~~i~l~~~rHPll~~~ 303 (742)
-+...-|..|+-.|..+|......|.+...+.++||+++|+|..|.++||++|.++++. -.+.|.++||||.+-.
T Consensus 509 ~~i~D~et~i~~~Lq~qvl~rk~~lt~~l~laSrldvLls~a~~aa~~gy~~P~lv~e~-----~il~I~ngrh~l~e~~ 583 (849)
T KOG0221|consen 509 CEIRDQETLIMYQLQCQVLARKAVLTRVLDLASRLDVLLSLASAAADYGYSRPRLVPEV-----LILRIQNGRHPLMELC 583 (849)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccHH-----HHHHHHcCChhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999864 2579999999998431
Q ss_pred cccccccccCCCCCCCCCCCCCcEEEeeeeeecCCceeccccccc-CCceEEEEEeCCCCCcchHHhhHHhhhhhhhhce
Q 004609 304 SLRSLSAASSNSNPLKSDVENSEMTVGSLSKGISDFPVPIDIKVE-CETRVVVITGPNTGGKTASMKTLGLASLMSKAGL 382 (742)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~l~~~nl~~~y~~~~v~i~l~l~-~g~~~~~ItGpNGsGKSTlLK~lGli~~maq~G~ 382 (742)
. +.+||++..++ .+.++.+|||||.||||++||++|++++|+|.|+
T Consensus 584 -~--------------------------------dtfvPNst~iggdkgri~vITGpNasGKSiYlkqvglivfLahIGs 630 (849)
T KOG0221|consen 584 -A--------------------------------DTFVPNSTEIGGDKGRIKVITGPNASGKSIYLKQVGLIVFLAHIGS 630 (849)
T ss_pred -H--------------------------------HhcCCCceeecCCCceEEEEeCCCCCCceEEEeechhhhHHHhhcc
Confidence 1 12679998887 3339999999999999999999999999999999
Q ss_pred eecCCCCCCchHHHHHHHHcCCccccccccccchHHHHHHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhc
Q 004609 383 YLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD 462 (742)
Q Consensus 383 ~vPa~~~~~i~~~d~il~~ig~~~~~~~~lstfSgg~krl~~~~~l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~ 462 (742)
|||++. +.++.+|.|+++|+.-+++....|||.-...+++.++..|+..+|+|+||.|.||+..+|-+|..+++.+...
T Consensus 631 FVPAe~-A~IGivDrI~tri~s~esv~~gqSTFmiD~~Qva~aLr~AT~~SLvlIDEfGKGT~tedGlsLlasvm~~w~~ 709 (849)
T KOG0221|consen 631 FVPAEE-AEIGIVDRIFTRIHSCESVSLGQSTFMIDLNQVAKALRNATAQSLVLIDEFGKGTNTEDGLSLLASVMRHWLA 709 (849)
T ss_pred ccchhh-hhcchHHHHHHHhhhhhhhhhhhhHHHHhHHHHHHHHHHhhcCcEEEEhhccCCccccccHHHHHHHHHHHHh
Confidence 999997 8999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CCc---EEEEEecChhhhhhc--ccccceecceE---EEecCccccchhhhcCCCCCchHHHHHHHCCCCHHHHHHHHHH
Q 004609 463 RVG---LAVVTTHYADLSCLK--DKDTRFENAAT---EFSLETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKL 534 (742)
Q Consensus 463 ~~~---~vlitTH~~~l~~~a--~~~~~i~~g~~---~~~~~~l~~~y~l~~g~~~~s~a~~ia~~~gl~~~ii~~A~~~ 534 (742)
.|. +|+++||++++..+. ...+.+.--.| ..+.+.+.++|++..|....|+|+.+|+..|+|++++.||++.
T Consensus 710 rg~~~PrifvcThfheL~ne~~L~~n~i~qfltm~vlr~~ge~I~flyrv~~gl~k~sfal~~ak~~glp~~vV~Ra~~v 789 (849)
T KOG0221|consen 710 RGPTCPRIFVCTHFHELVNEQLLPQNPIVQFLTMEVLREDGEDIVFLYRVCEGLAKASFALHTAKQAGLPDKVVARAKEV 789 (849)
T ss_pred cCCCCCeEEEeccHHHhhhhccCCcchhhhhhhHHHHHhccCCeEEEEEeccchhhhcccchhHhhcCCCHHHHHHHHHH
Confidence 764 599999999976531 11111111111 1245678899999999999999999999999999999999997
Q ss_pred HHHh
Q 004609 535 VERL 538 (742)
Q Consensus 535 ~~~~ 538 (742)
....
T Consensus 790 ~~ai 793 (849)
T KOG0221|consen 790 SDAI 793 (849)
T ss_pred HHHH
Confidence 7654
|
|
| >KOG0217 consensus Mismatch repair ATPase MSH6 (MutS family) [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=389.54 Aligned_cols=490 Identities=19% Similarity=0.231 Sum_probs=371.5
Q ss_pred CchHHHhccCCCCCCCHHHHHHHHHHHHHHHH--HHH-cCCCCCCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q 004609 1 MGHAVVQKAQIPFGKSLEESQKLLNQTSAALA--MMQ-SQPLDLSTIEDIAGILNSAVSGQLLSPSEICAVRRTLRAVNN 77 (742)
Q Consensus 1 mG~~~~~~~~l~~~~~~~~~~~~l~~~~e~~~--~~~-~~~~~l~~~~di~~~l~r~~~g~~l~~~el~~i~~~l~~~~~ 77 (742)
+|+|+++.|...|.-+.+.|..+|+-+.-... ... ...-.|..++|++++|.|+..|+.-....+.+..+.|..++.
T Consensus 574 fGKRllk~Wl~~Pl~~~~~I~~R~dav~~l~~~~~~~~~~~e~l~klPDlERlL~Rih~~~~~~~k~i~~f~rvLegfk~ 653 (1125)
T KOG0217|consen 574 FGKRLLKTWLMAPLCDKEDIKQRQDAVDSLGKAPMDRTKVGETLKKLPDLERLLVRIHNGGEKNKKKIADFIRVLEGFKE 653 (1125)
T ss_pred HHHHHHHHHhhCcCCCHHHHHHHHHHHHHHhcCchhHHHHHHHHhhCCcHHHHHHHHHhcCccchhHHHHHHHHHHHHHH
Confidence 69999999999999999999999988776655 111 223457899999999999988776557788888888887777
Q ss_pred HHHHHHHhhhccCCccccchhHHHHHhcCCChhHHHHHHhhhhcc-----CCCccc--CCcCHHHHHHHHHHHHHHHHHH
Q 004609 78 VWKKLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEKIGFCIDC-----KLLIIL--DRASEDLELIRAERKRNMENLD 150 (742)
Q Consensus 78 l~~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~l~~~I~~~id~-----~~~~i~--d~aS~~L~~iR~~~~~~~~~l~ 150 (742)
+-..+....... ........|..++.+++.+..-.+....++|. ++ .|- -+++.+++..-+.+++..+.+.
T Consensus 654 ~~~~~~~~~~v~-~~~~~~~~is~~~~~~p~~~~~i~~~~~af~r~~a~~eg-~i~P~~Gfd~eyD~a~k~~~e~e~~L~ 731 (1125)
T KOG0217|consen 654 INKLLGSLINVL-KEGEGLRLISELLESMPNLSEEIENWTEAFDRVKAVKEG-VIVPLEGFDEEYDEAMKRVDEAENELL 731 (1125)
T ss_pred HHHHHHHHHHHH-HhhHHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhhcC-ccCCCccccHHHHHHhhHHHHHHHHHH
Confidence 776665432100 00001122333344433233222333334443 22 343 3478889888888777777777
Q ss_pred HHHHHHHHHHHHhcCCCCccccccc---CcEEEEEccccccCCCCcEEEEEccCCcEEEeccchhhhhhhHHHHHhHH--
Q 004609 151 SLLKKVAAQIFQAGGIDKPLITKRR---SRMCVGIKASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNS-- 225 (742)
Q Consensus 151 ~~l~~~~~~~~~~~~~~~~~it~r~---~r~vi~v~~~~~~~~~~g~v~~~s~sg~t~~~ep~~~v~lnn~~~~l~~~-- 225 (742)
.+|..+..++ ...-|.+++ +.|.+.|+.+.....+..|+.-++..|...|+.|. +...+..+...
T Consensus 732 ~~L~~~rk~l------~c~si~~~~vGk~~y~lEvP~n~~~~s~~~~~~~S~~Kg~~RY~tp~----~~kli~~l~~aee 801 (1125)
T KOG0217|consen 732 AYLEEYRKRL------GCSSIVFVDVGKDVYQLEVPENGGVPSSLRYELMSAKKGVSRYYTPD----LRKLIAHLDEAEE 801 (1125)
T ss_pred HHHHHHHHhc------CCCceeEeecCceEEEEecCcccCCCCchHHHHHHhhcCcccccCHH----HHHHHHHHHHHHH
Confidence 7776654332 133333443 47999999888776665577778889999999995 23333332221
Q ss_pred -HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHhCC--ccceeecCCCCCCCcceEEEcccccccccc
Q 004609 226 -EIAEETAILSLLTAEIAKSEREIKYLMDRVLEIDLAFARAGFAQWMD--GVCPILSSQSHVSFDSSINIEGIKHPLLLG 302 (742)
Q Consensus 226 -e~~ee~~Il~~L~~~i~~~~~~l~~~~~~l~~lD~~~A~a~~a~~~~--~~~P~~~~~~~~~~~~~i~l~~~rHPll~~ 302 (742)
...-...+.+.+..++.++....+..+..++.|||+++.|.+|.-++ +|+|.|....+ .++.+.+++.|||.+..
T Consensus 802 ~~~~~~~d~~~r~~~~f~~~~~~w~~tv~~~a~iD~l~sla~~s~~~~~~~Crp~i~~~~d--t~~~l~~~~~~Hpcfsl 879 (1125)
T KOG0217|consen 802 RKKSSLSDLKRRLIVRFDEHYIIWQATVKALASIDCLLSLAETSKGLGGPMCRPEIVESTD--TPGFLIVKGLRHPCFSL 879 (1125)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccceeecccC--CCceeEEecccCceeec
Confidence 12223367777777788888889999999999999999999998776 69999977542 22368999999999853
Q ss_pred ccccccccccCCCCCCCCCCCCCcEEEeeeeeecCCceeccccccc-CCc-eEEEEEeCCCCCcchHHhhHHhhhhhhhh
Q 004609 303 SSLRSLSAASSNSNPLKSDVENSEMTVGSLSKGISDFPVPIDIKVE-CET-RVVVITGPNTGGKTASMKTLGLASLMSKA 380 (742)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~nl~~~y~~~~v~i~l~l~-~g~-~~~~ItGpNGsGKSTlLK~lGli~~maq~ 380 (742)
... ++.++|+++.+. .+. .+.++|||||+|||||||+++++++|||+
T Consensus 880 ~s~-------------------------------~~~fipN~v~~g~~~e~~~~llTGpNmgGKSTllRq~c~~vilaq~ 928 (1125)
T KOG0217|consen 880 PST-------------------------------GTSFIPNDVELGGAEENREGLLTGPNMGGKSTLLRQACIAVILAQI 928 (1125)
T ss_pred CcC-------------------------------CCccccchhhccccccceeeeeccCCcCCchHHHHHHHHHHHHHHh
Confidence 211 013679999887 333 34459999999999999999999999999
Q ss_pred ceeecCCCCCCchHHHHHHHHcCCccccccccccchHHHHHHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHH
Q 004609 381 GLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYL 460 (742)
Q Consensus 381 G~~vPa~~~~~i~~~d~il~~ig~~~~~~~~lstfSgg~krl~~~~~l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l 460 (742)
|++||+.. ..++.+|.|++++|..+.+..+.|||..+...-..|+..++..+||++||.|+||...+|.+|+.++++++
T Consensus 929 G~~VPa~~-~~~tpidrI~tRlGA~D~im~g~STF~vELsET~~IL~~aT~~SLvi~DELGRGtst~DG~aIA~aVLe~l 1007 (1125)
T KOG0217|consen 929 GCDVPAEV-MELTPIDRIFTRLGANDDIMSGESTFFVELSETKKILKHATRHSLVIVDELGRGTSTFDGTAIAEAVLEHL 1007 (1125)
T ss_pred CCCccHHH-hcccchHHHhhhcccccchhcCCceEEEeccchHHHHhhcCccceeeehhhcCcccccCCcchHHHHHHHH
Confidence 99999986 89999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hc-CCcEEEEEecChhhhhhcccccceecceEE--EecCc-cccchhhhcCCCCCchHHHHHHHCCCCHHHHHHHHHHHH
Q 004609 461 RD-RVGLAVVTTHYADLSCLKDKDTRFENAATE--FSLET-LRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVE 536 (742)
Q Consensus 461 ~~-~~~~vlitTH~~~l~~~a~~~~~i~~g~~~--~~~~~-l~~~y~l~~g~~~~s~a~~ia~~~gl~~~ii~~A~~~~~ 536 (742)
.. ..+..+++|||+.+...-.+.+.+..++|. .+.+. ..++|++..|.++.||++.+|+.+|+|..|+++|.....
T Consensus 1008 ~~~i~c~~fFSTHYhsl~~~~~~~p~Vrl~~Ma~~vd~e~~vtFLYkl~~G~cpkSyG~~vArmaglp~~vi~~a~~~a~ 1087 (1125)
T KOG0217|consen 1008 SEGIQCLGFFSTHYHSLCVDFMHHPQVRLLHMACVVDEEIDVTFLYKLEEGICPKSYGFNVARMAGLPDQVIDRAEIKAH 1087 (1125)
T ss_pred HhcccccCCccccccchhHhhhcCccccchhheeeecCCccEEEeehhccCCCCcchhHHHHHhcCCcHHHHHHHHHHHH
Confidence 88 467889999999987666666666666663 45554 889999999999999999999999999999999987654
|
|
| >KOG0220 consensus Mismatch repair ATPase MSH4 (MutS family) [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-41 Score=372.92 Aligned_cols=480 Identities=19% Similarity=0.290 Sum_probs=374.1
Q ss_pred CchHHHhccCCCCCCCHHHHHHHHHHHHHHHH---HHHcCCCCCCCCcCHHHHHHHHhc----CCCCCH----HHHHHHH
Q 004609 1 MGHAVVQKAQIPFGKSLEESQKLLNQTSAALA---MMQSQPLDLSTIEDIAGILNSAVS----GQLLSP----SEICAVR 69 (742)
Q Consensus 1 mG~~~~~~~~l~~~~~~~~~~~~l~~~~e~~~---~~~~~~~~l~~~~di~~~l~r~~~----g~~l~~----~el~~i~ 69 (742)
||-+.+|+..++|+.|.+.+..+|+-..|..+ +...+.+.++.+.|...++.++.. ..+-.+ .-+..++
T Consensus 294 ~g~r~lRssilqpl~d~~ti~~rleaiqeL~a~~~L~~~Lr~~~k~~~dld~~~s~~~~~~~~~~i~~~~s~I~~~~~Lk 373 (867)
T KOG0220|consen 294 GGYRRLRSSILQPLTDIETINMRLEAIQELLADEELFFGLRSVIKRFLDLDQLLSVLVQIPTQDTVNAAESKINNLIYLK 373 (867)
T ss_pred cchhhHHhhhcccccchhhhhHHHHHHHHHhcCchHhhhhHHHHhhhhhHHHHHHHHHhhhhHHhhhcchhHHHHHHHHH
Confidence 68999999999999999999999987777654 223567778899999888877521 111111 2356677
Q ss_pred HHHHHHHHHHHHHHHhhhccCCccccchhHHHHHhcC--CChhHHHHHHhhhhccCC--------------CcccCCcCH
Q 004609 70 RTLRAVNNVWKKLTEAAELDGDSLQRYSPLLELLKNC--NFLTELEEKIGFCIDCKL--------------LIILDRASE 133 (742)
Q Consensus 70 ~~l~~~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~l--~~~~~l~~~I~~~id~~~--------------~~i~d~aS~ 133 (742)
.+|..+.-++..+.... .+.+.++...+ +.+..+.+.|..+|+++. ..|+.+-.-
T Consensus 374 ~tL~lv~~~~~al~~~~---------s~~~~e~~~~~~~~r~~~i~~~i~e~I~dd~l~a~~~l~~~~qkcyAvks~i~~ 444 (867)
T KOG0220|consen 374 HTLELVDPLKIALKNCN---------SNLLREYYGSFKDKRFGIILEKIKEVINDDALYAKGCLNLRTQKCYAVKSNING 444 (867)
T ss_pred HHHHHHHHHHHHHhhch---------hHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHhccchhhhhccceeeecccccH
Confidence 78888877777775321 23444444433 346667888888888642 136666677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccC-cEEEEEccc----cccCCCCcEEEEEccCCcEEEec
Q 004609 134 DLELIRAERKRNMENLDSLLKKVAAQIFQAGGIDKPLITKRRS-RMCVGIKAS----HKYLLPDGIALNVSSSGATYFME 208 (742)
Q Consensus 134 ~L~~iR~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~it~r~~-r~vi~v~~~----~~~~~~~g~v~~~s~sg~t~~~e 208 (742)
.|+--|+-..++.......+++...+. .+ .....+.+. ||.+-++.. ....+| ..+.+.+.-..++-..
T Consensus 445 ~LDiaR~ty~ei~~~~~~~i~~l~E~~----~~-nl~~~f~sarGF~~ri~~~~~~~~~~~lP-~~fi~~~~~~~~~~~~ 518 (867)
T KOG0220|consen 445 FLDIARRTYTEIVDDIAGMISQLGEKF----SL-NLRLSFSSARGFFIRITTDCIALPSDTLP-SEFIKISKVKNSYSFT 518 (867)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc----Cc-cccccccccccEEEEeeccccccccccCc-hhhhhhhhhcceeeec
Confidence 788778776665554444444443322 11 111122222 455555543 344566 4555566555566566
Q ss_pred cchhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHhCCccceeecCCCCCCCcc
Q 004609 209 PKGAVEFNNMEVRLSNSEIAEETAILSLLTAEIAKSEREIKYLMDRVLEIDLAFARAGFAQWMDGVCPILSSQSHVSFDS 288 (742)
Q Consensus 209 p~~~v~lnn~~~~l~~~e~~ee~~Il~~L~~~i~~~~~~l~~~~~~l~~lD~~~A~a~~a~~~~~~~P~~~~~~~~~~~~ 288 (742)
...++.+|.++.+...++.-.-+.++.+|-+.+..++..+..+.+++.-||+++++|......++++|.|++
T Consensus 519 s~~~ik~N~Rlk~~~~E~~l~te~~v~~lld~i~~~I~~L~~iae~~~~lD~l~sfa~~~~~~~y~~P~fT~-------- 590 (867)
T KOG0220|consen 519 SADLIKMNERLKEVLREIFLMTEMIVCKLLDEIYEHISCLYKLAEAVSMLDMLCSFAHACTLSDYVRPEFTD-------- 590 (867)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCC--------
Confidence 677888999887776666666678999999999999999999999999999999999999888999999987
Q ss_pred eEEEccccccccccccccccccccCCCCCCCCCCCCCcEEEeeeeeecCCceecccccccCCceEEEEEeCCCCCcchHH
Q 004609 289 SINIEGIKHPLLLGSSLRSLSAASSNSNPLKSDVENSEMTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASM 368 (742)
Q Consensus 289 ~i~l~~~rHPll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~nl~~~y~~~~v~i~l~l~~g~~~~~ItGpNGsGKSTlL 368 (742)
.+-|.+||||+|++-+. ++++.++..+..+.++.+|||||||||||+|
T Consensus 591 slaI~qGRHPILe~i~~--------------------------------ek~i~N~t~~t~~s~f~IITGPNMsGKSTYL 638 (867)
T KOG0220|consen 591 SLAIKQGRHPILEKISA--------------------------------EKPIANNTYVTEGSNFLIITGPNMSGKSTYL 638 (867)
T ss_pred ceeeccCCCchhhhhcc--------------------------------cCcccCcceeecccceEEEECCCCCcchHHH
Confidence 38999999999964211 1467777777778789999999999999999
Q ss_pred hhHHhhhhhhhhceeecCCCCCCchHHHHHHHHcCCccccccccccchHHHHHHHHHHHhcCCCcEEEEcCCCCCCCHHH
Q 004609 369 KTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSE 448 (742)
Q Consensus 369 K~lGli~~maq~G~~vPa~~~~~i~~~d~il~~ig~~~~~~~~lstfSgg~krl~~~~~l~~~~~LlLLDEp~~glDp~~ 448 (742)
|+++++++|||+|+|+|+.- +.+++|++||++||-.|++..+-|+|..+|+..+.++.-+++.+||+|||.++||...+
T Consensus 639 KQvAl~~IMAQIGc~IPA~Y-aS~pIf~RIFtRmg~nDele~NsS~F~sEMke~A~Ilq~a~~~SLiVlDELgR~TStee 717 (867)
T KOG0220|consen 639 KQVALCQIMAQIGSYVPAEY-ASFRVFKRIFTRMGTNDELERNSSTFMSEMKEAAYILQNANKNSLIVLDELGRGTSTEE 717 (867)
T ss_pred HHHHHHHHHHHhccCcchhh-ccchHHHHHHHHhcCchhhhhchhHHHHHHHHHHHHHHhCCcCcEEEEhhhccCCcccc
Confidence 99999999999999999984 89999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEecChhhhhhcccccceecceEEEec--Ccccc-chhhhcCC-CCCchHHHHHHHCCCC
Q 004609 449 GVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFSL--ETLRP-TYRILWGS-TGDSNALNIAKSIGFD 524 (742)
Q Consensus 449 ~~aL~~all~~l~~~~~~vlitTH~~~l~~~a~~~~~i~~g~~~~~~--~~l~~-~y~l~~g~-~~~s~a~~ia~~~gl~ 524 (742)
|.++.+|+.+++.+-..+++++||+.++..++...+.+.|-++..+. .+... .|++..|. .+..+++..++..-+|
T Consensus 718 GiaityAvCE~lL~LkayTflATHFldIa~lan~~paVdnlHF~~q~~eNssk~~k~kLsrg~~~~~~yG~~~vE~s~iP 797 (867)
T KOG0220|consen 718 GIAITYAVCEYLLSLKAYTFLATHFLDIAAIANYYPAVDNLHFLVQTDENSSKNKKYKLSRGLTEEKNYGLKAAEVSSLP 797 (867)
T ss_pred chhhHHHHHHHHHHhhHhHHHHHHHHHHHHHhhcCccccceeeeeeecccchhhhhhhhhhhhhhcccccceEEEEecCC
Confidence 99999999999999889999999999999999999999998876543 22222 48887775 4567899999999999
Q ss_pred HHHHHHHHHHHH
Q 004609 525 RKIIQRAQKLVE 536 (742)
Q Consensus 525 ~~ii~~A~~~~~ 536 (742)
+++++.|+.+..
T Consensus 798 d~i~e~a~~~~t 809 (867)
T KOG0220|consen 798 DSIVEDAKEITT 809 (867)
T ss_pred HHHHHhhhHHHH
Confidence 999999988664
|
|
| >PF00488 MutS_V: MutS domain V C-terminus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-41 Score=348.25 Aligned_cols=228 Identities=36% Similarity=0.628 Sum_probs=186.0
Q ss_pred ccceeecCCCCCCCcceEEEccccccccccccccccccccCCCCCCCCCCCCCcEEEeeeeeecCCceecccccccCCc-
Q 004609 273 GVCPILSSQSHVSFDSSINIEGIKHPLLLGSSLRSLSAASSNSNPLKSDVENSEMTVGSLSKGISDFPVPIDIKVECET- 351 (742)
Q Consensus 273 ~~~P~~~~~~~~~~~~~i~l~~~rHPll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~nl~~~y~~~~v~i~l~l~~g~- 351 (742)
||+|.|+++. .+.++++|||+|+... +. +.+||+|+.+..+.
T Consensus 1 y~~P~~~~~~------~l~i~~~~HPll~~~~-~~------------------------------~~~v~ndi~~~~~~~ 43 (235)
T PF00488_consen 1 YCRPKISEEK------SLKIKEGRHPLLEEKL-EN------------------------------KKFVPNDIELSNNKS 43 (235)
T ss_dssp EB-EEEESTT------EEEEEEE--TTHHHHT-TT------------------------------SSC--EEEEESSSSS
T ss_pred CcccEEcCCC------CEEEEeccCCEEeccc-cC------------------------------CceecceeecCCCce
Confidence 7999999864 7999999999995421 11 13679999998774
Q ss_pred eEEEEEeCCCCCcchHHhhHHhhhhhhhhceeecCCCCCCchHHHHHHHHcCCccccccccccchHHHHHHHHHHHhcCC
Q 004609 352 RVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSR 431 (742)
Q Consensus 352 ~~~~ItGpNGsGKSTlLK~lGli~~maq~G~~vPa~~~~~i~~~d~il~~ig~~~~~~~~lstfSgg~krl~~~~~l~~~ 431 (742)
++++|||||+|||||+||++|++++|||+|+|||++. +.+++||+|+++++..|++..+.|+|..+++++..++..+++
T Consensus 44 ~~~iiTGpN~sGKSt~lk~i~~~~ilaq~G~~VPA~~-~~i~~~d~I~t~~~~~d~~~~~~S~F~~E~~~~~~il~~~~~ 122 (235)
T PF00488_consen 44 RIIIITGPNMSGKSTFLKQIGLIVILAQIGCFVPAES-AEIPIFDRIFTRIGDDDSIESGLSTFMAEMKRLSSILRNATE 122 (235)
T ss_dssp SEEEEESSTTSSHHHHHHHHHHHHHHHTTT--BSSSE-EEEE--SEEEEEES---SSTTSSSHHHHHHHHHHHHHHH--T
T ss_pred eEEEEeCCCccchhhHHHHHHHHhhhhhcCceeeecc-cccccccEEEeecccccccccccccHHHhHHHHHhhhhhccc
Confidence 6999999999999999999999999999999999996 899999999999999999999999999999999999999999
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhhcccccceecceEEEe--cCccccchhhhcCC
Q 004609 432 ESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYADLSCLKDKDTRFENAATEFS--LETLRPTYRILWGS 508 (742)
Q Consensus 432 ~~LlLLDEp~~glDp~~~~aL~~all~~l~~-~~~~vlitTH~~~l~~~a~~~~~i~~g~~~~~--~~~l~~~y~l~~g~ 508 (742)
.+|||+||+++||+|.+|.+++.+++++|.+ .++.+|++||++++..+......+.+.+|.+. .+.+.++|++..|.
T Consensus 123 ~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~~~i~~TH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~f~Ykl~~G~ 202 (235)
T PF00488_consen 123 KSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGCFVIIATHFHELAELLERNPNVQNYHMEVEEDNDSLTFTYKLKEGI 202 (235)
T ss_dssp TEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT-EEEEEES-GGGGGHHHHSTTEEEEEEEEEEETTEEEEEEEEEES-
T ss_pred ceeeecccccCCCChhHHHHHHHHHHHHHHHhccccEEEEeccchhHHHhhhCccccccceeeeeeccccceeEEEeECC
Confidence 9999999999999999999999999999998 58999999999998887766666777777654 46788999999999
Q ss_pred CCCchHHHHHHHCCCCHHHHHHHHHHHHHh
Q 004609 509 TGDSNALNIAKSIGFDRKIIQRAQKLVERL 538 (742)
Q Consensus 509 ~~~s~a~~ia~~~gl~~~ii~~A~~~~~~~ 538 (742)
++.|+|+.+|+.+|+|++++++|++.+..+
T Consensus 203 ~~~S~ai~iA~~~g~p~~II~rA~~i~~~l 232 (235)
T PF00488_consen 203 CSSSYAIEIAKLAGLPEEIIERAKEILKQL 232 (235)
T ss_dssp -SSTCHHHHHHHTT--HHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHhCcCHHHHHHHHHHHHHH
Confidence 999999999999999999999999987653
|
; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B .... |
| >cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-38 Score=321.60 Aligned_cols=190 Identities=31% Similarity=0.518 Sum_probs=173.8
Q ss_pred eecccccc--cCCceEEEEEeCCCCCcchHHhhHHhhhhhhhhceeecCCCCCCchHHHHHHHHcCCccccccccccchH
Q 004609 340 PVPIDIKV--ECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSG 417 (742)
Q Consensus 340 ~v~i~l~l--~~g~~~~~ItGpNGsGKSTlLK~lGli~~maq~G~~vPa~~~~~i~~~d~il~~ig~~~~~~~~lstfSg 417 (742)
+|++|+.+ .++ ++++|+||||+||||+|+++|++++|+|+|+|||++. ..+++|++|+++++..|++..+.|+|+.
T Consensus 18 ~v~ndi~l~~~~~-~~~~itG~n~~gKs~~l~~i~~~~~la~~G~~vpa~~-~~i~~~~~i~~~~~~~d~~~~~~StF~~ 95 (218)
T cd03286 18 FVPNDVDLGATSP-RILVLTGPNMGGKSTLLRTVCLAVIMAQMGMDVPAKS-MRLSLVDRIFTRIGARDDIMKGESTFMV 95 (218)
T ss_pred eEEeeeEEeecCC-cEEEEECCCCCchHHHHHHHHHHHHHHHcCCccCccc-cEeccccEEEEecCcccccccCcchHHH
Confidence 56555555 456 8999999999999999999999999999999999996 8999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcC-CcEEEEEecChhhhhhcccccceecceEEEec-
Q 004609 418 HISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDR-VGLAVVTTHYADLSCLKDKDTRFENAATEFSL- 495 (742)
Q Consensus 418 g~krl~~~~~l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~-~~~vlitTH~~~l~~~a~~~~~i~~g~~~~~~- 495 (742)
+++++..++..+++|+|+|||||++||||.++.+|++++++++.+. ++++|++|||+++.........+.+.+|.++.
T Consensus 96 e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~~~~~~i~~TH~~el~~~~~~~~~v~~~~m~~~~~ 175 (218)
T cd03286 96 ELSETANILRHATPDSLVILDELGRGTSTHDGYAIAHAVLEYLVKKVKCLTLFSTHYHSLCDEFHEHGGVRLGHMACAVK 175 (218)
T ss_pred HHHHHHHHHHhCCCCeEEEEecccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEeccHHHHHHhhcCcceEEEEEEEEEe
Confidence 9999999999999999999999999999999999999999999886 89999999999987765555677888887643
Q ss_pred -------CccccchhhhcCCCCCchHHHHHHHCCCCHHHHHHH
Q 004609 496 -------ETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRA 531 (742)
Q Consensus 496 -------~~l~~~y~l~~g~~~~s~a~~ia~~~gl~~~ii~~A 531 (742)
+++.|+|++..|.++.|||+.+|+++|+|++++++|
T Consensus 176 ~~~~~~~~~~~~~Ykl~~G~~~~s~al~~A~~~g~p~~vi~rA 218 (218)
T cd03286 176 NESDPTIRDITFLYKLVAGICPKSYGLYVALMAGIPDGVVERA 218 (218)
T ss_pred ccccCCCCceEEEEEECcCCCCCcHHHHHHHHhCcCHHHHhcC
Confidence 578999999999999999999999999999999876
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=320.02 Aligned_cols=196 Identities=28% Similarity=0.493 Sum_probs=177.5
Q ss_pred ee--cccccccCCceEEEEEeCCCCCcchHHhhHHhhhhhhhhceeecCCCCCCchHHHHHHHHcCCccccccccccchH
Q 004609 340 PV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSG 417 (742)
Q Consensus 340 ~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~lGli~~maq~G~~vPa~~~~~i~~~d~il~~ig~~~~~~~~lstfSg 417 (742)
+| +++++...+ ++++|+|||||||||+||++|++++|+|+|+|+|+.. ..++.++.++..+|..+++.+++|+||.
T Consensus 18 ~v~~~~~~~~~~~-~~~~l~G~n~~GKstll~~i~~~~~la~~g~~vpa~~-~~~~~~~~il~~~~l~d~~~~~lS~~~~ 95 (222)
T cd03285 18 FIPNDVTLTRGKS-RFLIITGPNMGGKSTYIRQIGVIVLMAQIGCFVPCDS-ADIPIVDCILARVGASDSQLKGVSTFMA 95 (222)
T ss_pred eEEeeEEEeecCC-eEEEEECCCCCChHHHHHHHHHHHHHHHhCCCcCccc-EEEeccceeEeeeccccchhcCcChHHH
Confidence 55 444555556 8999999999999999999999999999999999986 7899999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhhcccccceecceEEEec-
Q 004609 418 HISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYADLSCLKDKDTRFENAATEFSL- 495 (742)
Q Consensus 418 g~krl~~~~~l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~-~~~~vlitTH~~~l~~~a~~~~~i~~g~~~~~~- 495 (742)
++++++.++..+++|+|||||||++||++.++.++++++++++.+ .++++|++||+.++..++++...+.++++.++.
T Consensus 96 e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~il~~l~~~~~~~vlisTH~~el~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 96 EMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAWAIAEYIATQIKCFCLFATHFHELTALADEVPNVKNLHVTALTD 175 (222)
T ss_pred HHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHHHHHHHHHhcCCCeEEEEechHHHHHHhhcCCCeEEEEEEEEEe
Confidence 999888887778999999999999999999999999988888875 478999999998899999999999999987654
Q ss_pred ---CccccchhhhcCCCCCchHHHHHHHCCCCHHHHHHHHHHHHH
Q 004609 496 ---ETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVER 537 (742)
Q Consensus 496 ---~~l~~~y~l~~g~~~~s~a~~ia~~~gl~~~ii~~A~~~~~~ 537 (742)
+.+.|+|++..|.++.|+|+.+|+..|+|++++++|++....
T Consensus 176 ~~~~~~~~~Y~l~~G~~~~s~a~~~a~~~g~p~~vi~~A~~~~~~ 220 (222)
T cd03285 176 DASRTLTMLYKVEKGACDQSFGIHVAELANFPKEVIEMAKQKALE 220 (222)
T ss_pred CCCCcEeEEEEEeeCCCCCcHHHHHHHHhCcCHHHHHHHHHHHHh
Confidence 678899999999999999999999999999999999987653
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=315.50 Aligned_cols=184 Identities=54% Similarity=0.839 Sum_probs=172.5
Q ss_pred eecccccccCCceEEEEEeCCCCCcchHHhhHHhhhhhhhhceeecCCCCCCchHHHHHHHHcCCccccccccccchHHH
Q 004609 340 PVPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHI 419 (742)
Q Consensus 340 ~v~i~l~l~~g~~~~~ItGpNGsGKSTlLK~lGli~~maq~G~~vPa~~~~~i~~~d~il~~ig~~~~~~~~lstfSgg~ 419 (742)
++++||++.+|.++++|+||||||||||||++|++.+|+|+|+++|+.....+++|++++..++..+++...+|+||+||
T Consensus 17 ~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~~~~~~~~~~~~lg~~~~l~~~~s~fs~g~ 96 (200)
T cd03280 17 VVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGSSLPVFENIFADIGDEQSIEQSLSTFSSHM 96 (200)
T ss_pred eEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccccCcCccEEEEecCchhhhhcCcchHHHHH
Confidence 67999999988458999999999999999999999999999999999876789999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcccccceecceEEEecCccc
Q 004609 420 SRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFSLETLR 499 (742)
Q Consensus 420 krl~~~~~l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~l~~~a~~~~~i~~g~~~~~~~~l~ 499 (742)
+++..+...+.+|+++|+|||++|||+..+..+...+++.+.+.+.++|++||+.++..++++...+.+|.+.++.+++.
T Consensus 97 ~~~~~i~~~~~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~~~l~~~~d~~~~l~~g~l~~~~~~~~ 176 (200)
T cd03280 97 KNIARILQHADPDSLVLLDELGSGTDPVEGAALAIAILEELLERGALVIATTHYGELKAYAYKREGVENASMEFDPETLK 176 (200)
T ss_pred HHHHHHHHhCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHhcCCCeEEEEEEEecCccc
Confidence 98777777789999999999999999999999988788888877899999999988889999999999999999999999
Q ss_pred cchhhhcCCCCCchHHHHHHHCCC
Q 004609 500 PTYRILWGSTGDSNALNIAKSIGF 523 (742)
Q Consensus 500 ~~y~l~~g~~~~s~a~~ia~~~gl 523 (742)
++|++..|.++.|||+++|+++|+
T Consensus 177 ~~ykl~~G~~~~s~a~~~a~~~g~ 200 (200)
T cd03280 177 PTYRLLIGVPGRSNALEIARRLGL 200 (200)
T ss_pred EEEEEeECCCCCcHHHHHHHHcCC
Confidence 999999999999999999999985
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a |
| >cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-37 Score=317.05 Aligned_cols=188 Identities=31% Similarity=0.546 Sum_probs=171.3
Q ss_pred cccccccCCceEEEEEeCCCCCcchHHhhHHhhhhhhhhceeecCCCCCCchHHHHHHHHcCCccccccccccchHHHHH
Q 004609 342 PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISR 421 (742)
Q Consensus 342 ~i~l~l~~g~~~~~ItGpNGsGKSTlLK~lGli~~maq~G~~vPa~~~~~i~~~d~il~~ig~~~~~~~~lstfSgg~kr 421 (742)
++++.+..| ++++|+||||+||||+||+++++.+|+|+|+|+|+.. +.+++|++|+++++..|++..+.|+|+.++++
T Consensus 23 ~i~~~~~~g-~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~~-~~~~~~~~i~~~~~~~d~~~~~~StF~~e~~~ 100 (222)
T cd03287 23 DIHLSAEGG-YCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASS-ATLSIFDSVLTRMGASDSIQHGMSTFMVELSE 100 (222)
T ss_pred eEEEEecCC-cEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCc-eEEeccceEEEEecCccccccccchHHHHHHH
Confidence 566666677 8999999999999999999999999999999999986 89999999999999999999999999999999
Q ss_pred HHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcC-CcEEEEEecChhhhhhcccc-cceecceEEEec----
Q 004609 422 IVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDR-VGLAVVTTHYADLSCLKDKD-TRFENAATEFSL---- 495 (742)
Q Consensus 422 l~~~~~l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~-~~~vlitTH~~~l~~~a~~~-~~i~~g~~~~~~---- 495 (742)
++.++..+++++|+|||||++|||+.++.+++.++++++.+. ++++|++||+.++..+.... ..+.+.+|.|+.
T Consensus 101 ~~~il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~l~~~~~~~~~~v~~~~~~~~~~~~~ 180 (222)
T cd03287 101 TSHILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEEKKCLVLFVTHYPSLGEILRRFEGSIRNYHMSYLESQKD 180 (222)
T ss_pred HHHHHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhccCCeEEEEcccHHHHHHHHhcccCeEEEEEEEEEeccc
Confidence 999999999999999999999999999999999999999987 88999999999988776542 346677776542
Q ss_pred ------CccccchhhhcCCCCCchHHHHHHHCCCCHHHHHHH
Q 004609 496 ------ETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRA 531 (742)
Q Consensus 496 ------~~l~~~y~l~~g~~~~s~a~~ia~~~gl~~~ii~~A 531 (742)
+.+.|+|++..|.++.|||+.+|+.+|+|++++++|
T Consensus 181 ~~~~~~~~l~~~Ykl~~G~~~~s~a~~~a~~~g~p~~vi~rA 222 (222)
T cd03287 181 FETSDSQSITFLYKLVRGLASRSFGLNVARLAGLPKSIISRA 222 (222)
T ss_pred cccccCCcEEEEEEECcCCCCCcHHHHHHHHhCcCHHHHhcC
Confidence 468899999999999999999999999999999876
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >cd03284 ABC_MutS1 MutS1 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-36 Score=305.84 Aligned_cols=194 Identities=29% Similarity=0.507 Sum_probs=179.6
Q ss_pred eecccccccCCceEEEEEeCCCCCcchHHhhHHhhhhhhhhceeecCCCCCCchHHHHHHHHcCCccccccccccchHHH
Q 004609 340 PVPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHI 419 (742)
Q Consensus 340 ~v~i~l~l~~g~~~~~ItGpNGsGKSTlLK~lGli~~maq~G~~vPa~~~~~i~~~d~il~~ig~~~~~~~~lstfSgg~ 419 (742)
+|++|+.+..+.++++|+|||||||||+||++|++.+|+|+|+++|+.. ..++++++++..++..+++..+.|+|..++
T Consensus 19 ~v~n~~~l~~~~~~~~l~Gpn~sGKstllr~i~~~~~l~~~g~~vp~~~-~~i~~~~~i~~~~~~~~~ls~g~s~f~~e~ 97 (216)
T cd03284 19 FVPNDTELDPERQILLITGPNMAGKSTYLRQVALIALLAQIGSFVPASK-AEIGVVDRIFTRIGASDDLAGGRSTFMVEM 97 (216)
T ss_pred eEeeeEEecCCceEEEEECCCCCChHHHHHHHHHHHHHhccCCeecccc-ceecceeeEeccCCchhhhccCcchHHHHH
Confidence 5677777765558999999999999999999999999999999999986 789999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcC-CcEEEEEecChhhhhhcccccceecceEEE--ecC
Q 004609 420 SRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDR-VGLAVVTTHYADLSCLKDKDTRFENAATEF--SLE 496 (742)
Q Consensus 420 krl~~~~~l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~-~~~vlitTH~~~l~~~a~~~~~i~~g~~~~--~~~ 496 (742)
.++..++..+++|+|+|||||++||++.++.++..++++++.+. ++++|++||+.++..+++....+.++++.+ +.+
T Consensus 98 ~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~~~~~il~~l~~~~~~~vi~~TH~~~l~~l~~~~~~v~~~~~~~~~~~~ 177 (216)
T cd03284 98 VETANILNNATERSLVLLDEIGRGTSTYDGLSIAWAIVEYLHEKIGAKTLFATHYHELTELEGKLPRVKNFHVAVKEKGG 177 (216)
T ss_pred HHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhccCCcEEEEeCcHHHHHHhhcCCCeEEEEEEEEeeCC
Confidence 99999999999999999999999999999999988899999887 889999999999999999888899999877 456
Q ss_pred ccccchhhhcCCCCCchHHHHHHHCCCCHHHHHHHHHH
Q 004609 497 TLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKL 534 (742)
Q Consensus 497 ~l~~~y~l~~g~~~~s~a~~ia~~~gl~~~ii~~A~~~ 534 (742)
.+.++|++..|.++.|||+.+|++.|+|++++++|+++
T Consensus 178 ~l~~~ykl~~G~~~~s~a~~~a~~~g~~~~ii~rA~~~ 215 (216)
T cd03284 178 GVVFLHKIVEGAADKSYGIEVARLAGLPEEVIERAREI 215 (216)
T ss_pred eEEEEEEECcCCCCCcHHHHHHHHhCcCHHHHHHHHHh
Confidence 78999999999999999999999999999999999875
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam |
| >cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=302.05 Aligned_cols=183 Identities=29% Similarity=0.459 Sum_probs=165.7
Q ss_pred eecccccccCCc-eEEEEEeCCCCCcchHHhhHHhhhhhhhhceeecCCCCCCchHHHHHHHHcCCccccccccccchHH
Q 004609 340 PVPIDIKVECET-RVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGH 418 (742)
Q Consensus 340 ~v~i~l~l~~g~-~~~~ItGpNGsGKSTlLK~lGli~~maq~G~~vPa~~~~~i~~~d~il~~ig~~~~~~~~lstfSgg 418 (742)
+||+|+.++.+. ++++|+||||+|||||||++|++.+|+++|+++|+.. ..+++|++++..++..+++....|+|+.+
T Consensus 17 ~vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a~~-~~~~~~d~i~~~l~~~~si~~~~S~f~~e 95 (213)
T cd03281 17 FVPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPADS-ATIGLVDKIFTRMSSRESVSSGQSAFMID 95 (213)
T ss_pred eEcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEcCC-cEEeeeeeeeeeeCCccChhhccchHHHH
Confidence 789999998764 8999999999999999999999999999999999986 89999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcC---CcEEEEEecChhhhhhcc--cccceecceEEE
Q 004609 419 ISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDR---VGLAVVTTHYADLSCLKD--KDTRFENAATEF 493 (742)
Q Consensus 419 ~krl~~~~~l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~---~~~vlitTH~~~l~~~a~--~~~~i~~g~~~~ 493 (742)
+++++.++.++.+|+|+|||||++||||.++.+++.++++++.+. +.++|++|||.++..... ....+.+.+|.+
T Consensus 96 l~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~~~~~~~~~~~~~~~~ 175 (213)
T cd03281 96 LYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRSLLPERLKIKFLTMEV 175 (213)
T ss_pred HHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhhhhccCCceEEEEEEE
Confidence 999999999999999999999999999999999998899998765 248999999999776553 445677788876
Q ss_pred --e------cCccccchhhhcCCCCCchHHHHHHHCCC
Q 004609 494 --S------LETLRPTYRILWGSTGDSNALNIAKSIGF 523 (742)
Q Consensus 494 --~------~~~l~~~y~l~~g~~~~s~a~~ia~~~gl 523 (742)
+ .+.+.|+|++..|+++.|||+.+|+++|+
T Consensus 176 ~~~~~~~~~~~~~~~~y~l~~G~~~~s~a~~~a~~~g~ 213 (213)
T cd03281 176 LLNPTSTSPNEDITYLYRLVPGLADTSFAIHCAKLAGI 213 (213)
T ss_pred EEcCCccCCCCcEEEEEEEeeCCCCCCHHHHHHHHcCC
Confidence 3 26789999999999999999999999985
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-35 Score=296.84 Aligned_cols=179 Identities=27% Similarity=0.523 Sum_probs=163.2
Q ss_pred cccccccCCceEEEEEeCCCCCcchHHhhHHhhhhhhhhceeecCCCCCCchHHHHHHHHcCCccccccccccchHHHHH
Q 004609 342 PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISR 421 (742)
Q Consensus 342 ~i~l~l~~g~~~~~ItGpNGsGKSTlLK~lGli~~maq~G~~vPa~~~~~i~~~d~il~~ig~~~~~~~~lstfSgg~kr 421 (742)
+++++...| ++++|+||||+||||+||+++.+++|+|+|+|+|+.. ..+++|++++..++..+++.++.|+||+||++
T Consensus 21 ~~~~~~~~~-~~~~l~G~n~~GKstll~~i~~~~~la~~G~~vpa~~-~~l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~ 98 (204)
T cd03282 21 DIYLTRGSS-RFHIITGPNMSGKSTYLKQIALLAIMAQIGCFVPAEY-ATLPIFNRLLSRLSNDDSMERNLSTFASEMSE 98 (204)
T ss_pred eeEEeeCCC-cEEEEECCCCCCHHHHHHHHHHHHHHHHcCCCcchhh-cCccChhheeEecCCccccchhhhHHHHHHHH
Confidence 666677777 8999999999999999999999999999999999986 78999999999999999999999999999999
Q ss_pred HHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcccccceecceEEEec---Ccc
Q 004609 422 IVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFSL---ETL 498 (742)
Q Consensus 422 l~~~~~l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~l~~~a~~~~~i~~g~~~~~~---~~l 498 (742)
+..+..++++|+|+|||||++||||.++.++..++++++.+.+.++|++||+.++..+......+.+.++.++. +.+
T Consensus 99 ~~~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~~~~~~i~~TH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~ 178 (204)
T cd03282 99 TAYILDYADGDSLVLIDELGRGTSSADGFAISLAILECLIKKESTVFFATHFRDIAAILGNKSCVVHLHMKAQSINSNGI 178 (204)
T ss_pred HHHHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHHHhhcCCCeEEEEEEEEEcCCCce
Confidence 99999999999999999999999999999999999999998899999999999988776655566666676553 678
Q ss_pred ccchhhhcCCCC-CchHHHHHHHCC
Q 004609 499 RPTYRILWGSTG-DSNALNIAKSIG 522 (742)
Q Consensus 499 ~~~y~l~~g~~~-~s~a~~ia~~~g 522 (742)
.++|++..|.+. .|||+.+|+.+.
T Consensus 179 ~~~ykl~~G~~~~~~~g~~~a~~~~ 203 (204)
T cd03282 179 EMAYKLVLGLYRIVDDGIRFVRVLA 203 (204)
T ss_pred eeEEEEeeCCCCCCccHHHHHHHhh
Confidence 899999999999 999999999764
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >smart00533 MUTSd DNA-binding domain of DNA mismatch repair MUTS family | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-34 Score=304.14 Aligned_cols=284 Identities=19% Similarity=0.183 Sum_probs=234.8
Q ss_pred CchHHHhccCCCCCCCHHHHHHHHHHHHHHHH--HH-HcCCCCCCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q 004609 1 MGHAVVQKAQIPFGKSLEESQKLLNQTSAALA--MM-QSQPLDLSTIEDIAGILNSAVSGQLLSPSEICAVRRTLRAVNN 77 (742)
Q Consensus 1 mG~~~~~~~~l~~~~~~~~~~~~l~~~~e~~~--~~-~~~~~~l~~~~di~~~l~r~~~g~~l~~~el~~i~~~l~~~~~ 77 (742)
||++++++|.+.|..+.++|+.+++.++++.. .+ .....+|++++|+++++.++..|. +++.||..+..++..+..
T Consensus 15 ~G~r~L~~wl~~Pl~~~~~I~~R~~~v~~~~~~~~l~~~l~~~L~~~~Di~~~l~~~~~~~-~~~~el~~l~~~l~~~~~ 93 (308)
T smart00533 15 MGKRLLRRWLLQPLLDLKEINERLDAVEELVENPELRQKLRQLLKRIPDLERLLSRIERGR-ASPRDLLRLYDSLEGLKE 93 (308)
T ss_pred HHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhChHHHHHHHHHHccCCcHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999987 33 344558999999999999998875 699999999999999999
Q ss_pred HHHHHHHhhhccCCccccchhH-HHH----HhcCCChhHHHHHHhhhhccCCCcccCCcCHHHHHHHHHHHHHHHHHHHH
Q 004609 78 VWKKLTEAAELDGDSLQRYSPL-LEL----LKNCNFLTELEEKIGFCIDCKLLIILDRASEDLELIRAERKRNMENLDSL 152 (742)
Q Consensus 78 l~~~l~~~~~~~~~~~~~~~~l-~~l----~~~l~~~~~l~~~I~~~id~~~~~i~d~aS~~L~~iR~~~~~~~~~l~~~ 152 (742)
+++++..... ..++++ ..+ ...+..+.++...++.+++++++.|+|+||++|+.||++++++...+++.
T Consensus 94 l~~~l~~~~~------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~s~~Ld~lr~~~~~l~~~l~~~ 167 (308)
T smart00533 94 IRQLLESLDG------PLLGLLLKVILEPLLELLELLLELLNDDDPLEVNDGGLIKDGFDPELDELREKLEELEEELEEL 167 (308)
T ss_pred HHHHHHhcCc------HHHHHHHHhhccchHHHHHHHHHHhccCCcccccCCCeeCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999965311 001111 111 11222333444445555555546899999999999999999888888887
Q ss_pred HHHHHHHHHHhcCCCCcccccccCcEEEEEccccccCCCCcEEEEEccCCcEEEeccchhhhhhhHHHHHhHHHHHHHHH
Q 004609 153 LKKVAAQIFQAGGIDKPLITKRRSRMCVGIKASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEETA 232 (742)
Q Consensus 153 l~~~~~~~~~~~~~~~~~it~r~~r~vi~v~~~~~~~~~~g~v~~~s~sg~t~~~ep~~~v~lnn~~~~l~~~e~~ee~~ 232 (742)
+.+...+. ....++..+++.++ |||+|+..++..+| |.+|+.|++|.|+|++|.+++++||++.++..++..++.+
T Consensus 168 ~~~~~~~~-~~~~l~~~~~~~~g--~~i~v~~~~~~~~~-~~~~~~s~s~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 243 (308)
T smart00533 168 LKKEREEL-GIDSLKLGYNKVHG--YYIEVTKSEAKKVP-KDFIRRSSLKNTERFTTPELKELENELLEAKEEIERLEKE 243 (308)
T ss_pred HHHHHHHh-CCCceEEeEeccEE--EEEEecchhhccCC-hHHHHHhhhcccceeeCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77654331 11233444455544 99999999999999 8899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHhCCccceeecCCCCCCCcceEEEccccccccc
Q 004609 233 ILSLLTAEIAKSEREIKYLMDRVLEIDLAFARAGFAQWMDGVCPILSSQSHVSFDSSINIEGIKHPLLL 301 (742)
Q Consensus 233 Il~~L~~~i~~~~~~l~~~~~~l~~lD~~~A~a~~a~~~~~~~P~~~~~~~~~~~~~i~l~~~rHPll~ 301 (742)
|+.+|+..+.++.+.+..+.+++++||+++|+|.+|.+++||+|.|++++ .|.+++||||+++
T Consensus 244 i~~~l~~~i~~~~~~l~~~~~~i~~lD~l~s~a~~a~~~~~~~P~i~~~~------~l~i~~~rHPlle 306 (308)
T smart00533 244 ILRELLEKVLEYLEELRALAEALAELDVLLSLATLAAEGNYVRPEFVDSG------ELEIKNGRHPVLE 306 (308)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCCeeCCCC------CEEEeeCCCCccc
Confidence 99999999999999999999999999999999999999999999998853 6999999999984
|
|
| >smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=289.91 Aligned_cols=181 Identities=38% Similarity=0.656 Sum_probs=169.0
Q ss_pred EEEEEeCCCCCcchHHhhHHhhhhhhhhceeecCCCCCCchHHHHHHHHcCCccccccccccchHHHHHHHHHHHhcCCC
Q 004609 353 VVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRE 432 (742)
Q Consensus 353 ~~~ItGpNGsGKSTlLK~lGli~~maq~G~~vPa~~~~~i~~~d~il~~ig~~~~~~~~lstfSgg~krl~~~~~l~~~~ 432 (742)
+++|||||||||||+||++|++.+|+|+|+|+|+.. +.++++++++..++..+++.++.|+||+++++++.++..+++|
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~-~~~~~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~~~~~ 79 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAES-AELPVFDRIFTRIGASDSLAQGLSTFMVEMKETANILKNATEN 79 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehh-eEecccceEEEEeCCCCchhccccHHHHHHHHHHHHHHhCCCC
Confidence 478999999999999999999999999999999986 8999999999999999999999999999999999998889999
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHHHHHHHhcC-CcEEEEEecChhhhhhcccccceecceEEEecC--ccccchhhhcCCC
Q 004609 433 SLVLIDEIGSGTDPSEGVALATSILQYLRDR-VGLAVVTTHYADLSCLKDKDTRFENAATEFSLE--TLRPTYRILWGST 509 (742)
Q Consensus 433 ~LlLLDEp~~glDp~~~~aL~~all~~l~~~-~~~vlitTH~~~l~~~a~~~~~i~~g~~~~~~~--~l~~~y~l~~g~~ 509 (742)
+|+|+|||++||||.++..+..++++++.+. ++++|++||+.++..+++....+.+.+|.++.+ .+.++|++..|.+
T Consensus 80 ~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~Y~l~~G~~ 159 (185)
T smart00534 80 SLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHELTKLADEHPGVRNLHMSADEETENLTFLYKLTPGVA 159 (185)
T ss_pred eEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHHHhhcCccceEEEEEEEEecCceeEEEEEeECCC
Confidence 9999999999999999999998899998874 889999999999999998878888888877644 5889999999999
Q ss_pred CCchHHHHHHHCCCCHHHHHHHHHH
Q 004609 510 GDSNALNIAKSIGFDRKIIQRAQKL 534 (742)
Q Consensus 510 ~~s~a~~ia~~~gl~~~ii~~A~~~ 534 (742)
+.|+|+.+|+..|+|++++++|++.
T Consensus 160 ~~s~a~~~a~~~g~~~~i~~~a~~~ 184 (185)
T smart00534 160 GKSYGIEVAKLAGLPKEVIERAKEI 184 (185)
T ss_pred CCcHHHHHHHHhCCCHHHHHHHHHh
Confidence 9999999999999999999999864
|
|
| >cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-34 Score=289.62 Aligned_cols=182 Identities=35% Similarity=0.584 Sum_probs=170.0
Q ss_pred eecccccccCCceEEEEEeCCCCCcchHHhhHHhhhhhhhhceeecCCCCCCchHHHHHHHHcCCccccccccccchHHH
Q 004609 340 PVPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHI 419 (742)
Q Consensus 340 ~v~i~l~l~~g~~~~~ItGpNGsGKSTlLK~lGli~~maq~G~~vPa~~~~~i~~~d~il~~ig~~~~~~~~lstfSgg~ 419 (742)
++++|+++..| ++++|+||||||||||||+|+...+++++|.++|+.. ..++++++++..++..+++....|+|+.++
T Consensus 19 ~~~~~~~l~~~-~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~~~~-~~i~~~dqi~~~~~~~d~i~~~~s~~~~e~ 96 (202)
T cd03243 19 FVPNDINLGSG-RLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVPAES-ASIPLVDRIFTRIGAEDSISDGRSTFMAEL 96 (202)
T ss_pred eEeeeEEEcCC-eEEEEECCCCCccHHHHHHHHHHHHHHHcCCCccccc-cccCCcCEEEEEecCcccccCCceeHHHHH
Confidence 67999999998 9999999999999999999998889999999999976 789999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcccccceecceEEEecC--c
Q 004609 420 SRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFSLE--T 497 (742)
Q Consensus 420 krl~~~~~l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~l~~~a~~~~~i~~g~~~~~~~--~ 497 (742)
+++..+...+.+|+++|+||||+||||.++..+...+++.+.+.+.++|++||+.++...++....+.++++..+.+ .
T Consensus 97 ~~l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~vi~~tH~~~~~~~~~~~~~l~~~~~~~~~~~~~ 176 (202)
T cd03243 97 LELKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCRTLFATHFHELADLPEQVPGVKNLHMEELITTGG 176 (202)
T ss_pred HHHHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEECChHHHHHHhhcCCCeEEEEEEEEecCCe
Confidence 99999999999999999999999999999999988888888888899999999999988888888899999887654 6
Q ss_pred cccchhhhcCCCCCchHHHHHHHCCC
Q 004609 498 LRPTYRILWGSTGDSNALNIAKSIGF 523 (742)
Q Consensus 498 l~~~y~l~~g~~~~s~a~~ia~~~gl 523 (742)
+.++|++..|.+..|+|+.+|++.|+
T Consensus 177 ~~~~ykl~~g~~~~~~a~~~~~~~g~ 202 (202)
T cd03243 177 LTFTYKLIDGICDPSYALQIAELAGL 202 (202)
T ss_pred eeEEEEEeECCCCCcHHHHHHHHcCC
Confidence 89999999999999999999999985
|
Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru |
| >cd03283 ABC_MutS-like MutS-like homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-31 Score=269.15 Aligned_cols=181 Identities=29% Similarity=0.439 Sum_probs=158.5
Q ss_pred eecccccccCCceEEEEEeCCCCCcchHHhhHHhhhhhhhhceeecCCCCCCchHHHHHHHHcCCccccccccccchHHH
Q 004609 340 PVPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHI 419 (742)
Q Consensus 340 ~v~i~l~l~~g~~~~~ItGpNGsGKSTlLK~lGli~~maq~G~~vPa~~~~~i~~~d~il~~ig~~~~~~~~lstfSgg~ 419 (742)
+|++|+++..| ++++|+||||||||||||+|+...++++.|.++|+.. ..++ ++.+|..+...+++..+.|.|..++
T Consensus 15 ~v~n~i~l~~g-~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~-~~~q-~~~l~~~~~~~d~l~~~~s~~~~e~ 91 (199)
T cd03283 15 RVANDIDMEKK-NGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASS-FELP-PVKIFTSIRVSDDLRDGISYFYAEL 91 (199)
T ss_pred eecceEEEcCC-cEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCc-cCcc-cceEEEeccchhccccccChHHHHH
Confidence 67889999999 9999999999999999999998999999999999975 6677 6788888888888888888888787
Q ss_pred HHHHHHHHhcC--CCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcccccceecceE--EEec
Q 004609 420 SRIVDILELVS--RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAAT--EFSL 495 (742)
Q Consensus 420 krl~~~~~l~~--~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~l~~~a~~~~~i~~g~~--~~~~ 495 (742)
+|+..++..+. +|+++|+|||++|||+.++..+..++++.+.+.+.++|++||++++.........+.+.++ .++.
T Consensus 92 ~~~~~iL~~~~~~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~~~~tiiivTH~~~~~~~~~~~~~v~~~~~~~~~~~ 171 (199)
T cd03283 92 RRLKEIVEKAKKGEPVLFLLDEIFKGTNSRERQAASAAVLKFLKNKNTIGIISTHDLELADLLDLDSAVRNYHFREDIDD 171 (199)
T ss_pred HHHHHHHHhccCCCCeEEEEecccCCCCHHHHHHHHHHHHHHHHHCCCEEEEEcCcHHHHHhhhcCCCeEEEEEEEEEEC
Confidence 89999988888 9999999999999999999998877888888778899999999997776655555665544 3456
Q ss_pred CccccchhhhcCCCCCchHHHHHHHCCC
Q 004609 496 ETLRPTYRILWGSTGDSNALNIAKSIGF 523 (742)
Q Consensus 496 ~~l~~~y~l~~g~~~~s~a~~ia~~~gl 523 (742)
+.+.++|++..|.++.|+|+.+|++.|+
T Consensus 172 ~~~~~~y~~~~G~~~~s~~~~~a~~~g~ 199 (199)
T cd03283 172 NKLIFDYKLKPGVSPTRNALRLMKKIGI 199 (199)
T ss_pred CeeeEEEEeCCCCCCCcHHHHHHHHcCC
Confidence 7889999999999999999999999985
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid |
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-29 Score=261.74 Aligned_cols=167 Identities=21% Similarity=0.293 Sum_probs=143.9
Q ss_pred cEEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhh-------------------hhhhcee
Q 004609 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKAGLY 383 (742)
Q Consensus 326 ~l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~-------------------maq~G~~ 383 (742)
.++++||+++|+++++ ++||++++| ++++|+||||||||||||++ |++.+ +|+.-.|
T Consensus 2 ~L~~~~ls~~y~~~~il~~ls~~i~~G-~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~ 80 (258)
T COG1120 2 MLEVENLSFGYGGKPILDDLSFSIPKG-EITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAY 80 (258)
T ss_pred eeEEEEEEEEECCeeEEecceEEecCC-cEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEE
Confidence 3678999999998887 999999999 99999999999999999999 66643 4667779
Q ss_pred ecCCCCCCc----------------h-----------HHHHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEE
Q 004609 384 LPAKNHPRL----------------P-----------WFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLV 435 (742)
Q Consensus 384 vPa~~~~~i----------------~-----------~~d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~Ll 435 (742)
+|+...... + .+++.+..+|..+..++.+++|||||+ |+.+|++++++|.++
T Consensus 81 vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iL 160 (258)
T COG1120 81 VPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPIL 160 (258)
T ss_pred eccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEE
Confidence 998852211 1 134558889999999999999999999 788889999999999
Q ss_pred EEcCCCCCCCHHHHHHHHHHHHHHHh-cCCcEEEEEecChhhh-hhcccccceecceEEEe
Q 004609 436 LIDEIGSGTDPSEGVALATSILQYLR-DRVGLAVVTTHYADLS-CLKDKDTRFENAATEFS 494 (742)
Q Consensus 436 LLDEp~~glDp~~~~aL~~all~~l~-~~~~~vlitTH~~~l~-~~a~~~~~i~~g~~~~~ 494 (742)
||||||++||+.....+.+ ++..+. ++|.|+|+|+||.+++ .|||+.+.+.+|.+...
T Consensus 161 LLDEPTs~LDi~~Q~evl~-ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~ 220 (258)
T COG1120 161 LLDEPTSHLDIAHQIEVLE-LLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQ 220 (258)
T ss_pred EeCCCccccCHHHHHHHHH-HHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEee
Confidence 9999999999999999999 555565 6689999999999855 69999999999998765
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.5e-29 Score=259.54 Aligned_cols=165 Identities=23% Similarity=0.319 Sum_probs=138.6
Q ss_pred cEEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh-------h---------hhceeecC
Q 004609 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------S---------KAGLYLPA 386 (742)
Q Consensus 326 ~l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m-------a---------q~G~~vPa 386 (742)
.++++|+++.|++.++ ++||++++| ++++|+||||||||||+|++ |++.+- . ....||||
T Consensus 4 ~i~v~nl~v~y~~~~vl~~i~l~v~~G-~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ 82 (254)
T COG1121 4 MIEVENLTVSYGNRPVLEDISLSVEKG-EITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQ 82 (254)
T ss_pred EEEEeeeEEEECCEeeeeccEEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCc
Confidence 4789999999986445 999999999 99999999999999999999 877541 1 23458998
Q ss_pred CCCC--Cch---------------------------HHHHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEEE
Q 004609 387 KNHP--RLP---------------------------WFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVL 436 (742)
Q Consensus 387 ~~~~--~i~---------------------------~~d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlL 436 (742)
.... .+| -++..+..+|+.+..++.+++|||||+ |+.+|++++++|+|+|
T Consensus 83 ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lll 162 (254)
T COG1121 83 KSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLL 162 (254)
T ss_pred ccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEE
Confidence 5411 111 145678999999999999999999999 8999999999999999
Q ss_pred EcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEE
Q 004609 437 IDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF 493 (742)
Q Consensus 437 LDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~ 493 (742)
|||||+|+|+.....|.. ++..+++.|+|||++|||+. +..++|+++.+.. ++.+
T Consensus 163 LDEP~~gvD~~~~~~i~~-lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln~-~~~~ 218 (254)
T COG1121 163 LDEPFTGVDVAGQKEIYD-LLKELRQEGKTVLMVTHDLGLVMAYFDRVICLNR-HLIA 218 (254)
T ss_pred ecCCcccCCHHHHHHHHH-HHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEcC-eeEe
Confidence 999999999999999998 88888888999999999987 6778998876544 4433
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.3e-29 Score=246.35 Aligned_cols=166 Identities=22% Similarity=0.296 Sum_probs=138.2
Q ss_pred EEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhh--------------------hhhhcee
Q 004609 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL--------------------MSKAGLY 383 (742)
Q Consensus 327 l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~--------------------maq~G~~ 383 (742)
++++||+|.||+..| ++|+++.+| ++++|+||+||||||||||| +|-.+ +.+--++
T Consensus 3 i~i~~l~K~fg~~~VLkgi~l~v~~G-evv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGm 81 (240)
T COG1126 3 IEIKNLSKSFGDKEVLKGISLSVEKG-EVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGM 81 (240)
T ss_pred EEEEeeeEEeCCeEEecCcceeEcCC-CEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCe
Confidence 678999999999877 999999999 99999999999999999999 22211 1111224
Q ss_pred ecCCCC--CCchHHH----------------------HHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEEEEc
Q 004609 384 LPAKNH--PRLPWFD----------------------LILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLID 438 (742)
Q Consensus 384 vPa~~~--~~i~~~d----------------------~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLD 438 (742)
|+++.+ ..+++.+ .++..+|+.+..+.+++.|||||+ |+++|++++.+|.++|+|
T Consensus 82 VFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFD 161 (240)
T COG1126 82 VFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFD 161 (240)
T ss_pred ecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeec
Confidence 555431 2233333 348889999999999999999999 999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChhhh-hhcccccceecceEEEe
Q 004609 439 EIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLS-CLKDKDTRFENAATEFS 494 (742)
Q Consensus 439 Ep~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~l~-~~a~~~~~i~~g~~~~~ 494 (742)
||||.|||+-...+.. ++..|++.|.|.|++||.+.++ ..||+++.++.|.+...
T Consensus 162 EPTSALDPElv~EVL~-vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~ 217 (240)
T COG1126 162 EPTSALDPELVGEVLD-VMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEE 217 (240)
T ss_pred CCcccCCHHHHHHHHH-HHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEe
Confidence 9999999999999988 7778999999999999999966 58999999999966543
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.2e-29 Score=250.69 Aligned_cols=166 Identities=21% Similarity=0.307 Sum_probs=139.7
Q ss_pred cEEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhh-----------------------hhh
Q 004609 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-----------------------MSK 379 (742)
Q Consensus 326 ~l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~-----------------------maq 379 (742)
.+++++|+++||++.| ++||++.+| ++++|+||+|+||||+||+| |++.+ ..+
T Consensus 8 ~I~vr~v~~~fG~~~Ild~v~l~V~~G-ei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r 86 (263)
T COG1127 8 LIEVRGVTKSFGDRVILDGVDLDVPRG-EILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKR 86 (263)
T ss_pred eEEEeeeeeecCCEEEecCceeeecCC-cEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHhh
Confidence 6789999999999988 999999999 99999999999999999999 55532 122
Q ss_pred hceeecCCC--CCCchHHHHH----------------------HHHcCCccc-cccccccchHHHH-HHHHHHHhcCCCc
Q 004609 380 AGLYLPAKN--HPRLPWFDLI----------------------LADIGDHQS-LEQNLSTFSGHIS-RIVDILELVSRES 433 (742)
Q Consensus 380 ~G~~vPa~~--~~~i~~~d~i----------------------l~~ig~~~~-~~~~lstfSgg~k-rl~~~~~l~~~~~ 433 (742)
+| .++|.+ +..+++++|+ +..+|+... .+..+|.|||||+ |+++|++++.+|+
T Consensus 87 ~G-vlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPe 165 (263)
T COG1127 87 MG-VLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPE 165 (263)
T ss_pred ee-EEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCC
Confidence 33 444544 2345555554 456788777 8999999999999 9999999999999
Q ss_pred EEEEcCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 434 LVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 434 LlLLDEp~~glDp~~~~aL~~all~~l~~-~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
|+++||||+||||.....+.. ++..+++ -|.|++++|||.+ +..+||+...+.++++.+.
T Consensus 166 ll~~DEPtsGLDPI~a~~~~~-LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~ 227 (263)
T COG1127 166 LLFLDEPTSGLDPISAGVIDE-LIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAE 227 (263)
T ss_pred EEEecCCCCCCCcchHHHHHH-HHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEe
Confidence 999999999999999999988 5555554 5889999999976 7889999999999999886
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.4e-27 Score=276.69 Aligned_cols=170 Identities=21% Similarity=0.235 Sum_probs=134.6
Q ss_pred CcEEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh------h-h-hceeecCCCC----
Q 004609 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------S-K-AGLYLPAKNH---- 389 (742)
Q Consensus 325 ~~l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m------a-q-~G~~vPa~~~---- 389 (742)
..+.++||++.|+++.+ ++||+|.+| ++++|+||||||||||||+| |++.+- . . ...|+|+...
T Consensus 311 ~~l~~~~l~~~y~~~~il~~isl~i~~G-e~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~igy~~Q~~~~~l~ 389 (638)
T PRK10636 311 PLLKMEKVSAGYGDRIILDSIKLNLVPG-SRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQLEFLR 389 (638)
T ss_pred ceEEEEeeEEEeCCeeeeccceEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEEEEecCcchhhCC
Confidence 46889999999988666 999999999 99999999999999999999 665331 0 0 1135555420
Q ss_pred CCchH---------------HHHHHHHcCCc-cccccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHH
Q 004609 390 PRLPW---------------FDLILADIGDH-QSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVAL 452 (742)
Q Consensus 390 ~~i~~---------------~d~il~~ig~~-~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLDEp~~glDp~~~~aL 452 (742)
....+ +..++..++.. +..++++++|||||+ |++++++++.+|++|||||||+|||+.....|
T Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l 469 (638)
T PRK10636 390 ADESPLQHLARLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQAL 469 (638)
T ss_pred ccchHHHHHHHhCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHH
Confidence 11111 22356667775 468899999999999 99999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEecCccc
Q 004609 453 ATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFSLETLR 499 (742)
Q Consensus 453 ~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~~~~l~ 499 (742)
..++.++ ++|||+||||.+ +..+|++++.+.+|.+....+++.
T Consensus 470 ~~~L~~~----~gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~ 513 (638)
T PRK10636 470 TEALIDF----EGALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLE 513 (638)
T ss_pred HHHHHHc----CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHH
Confidence 9966654 469999999988 567899999999999874444443
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-27 Score=256.14 Aligned_cols=168 Identities=24% Similarity=0.330 Sum_probs=139.0
Q ss_pred cEEEeeeeeecC-Ccee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh------------------hhhcee
Q 004609 326 EMTVGSLSKGIS-DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------SKAGLY 383 (742)
Q Consensus 326 ~l~~~nl~~~y~-~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m------------------aq~G~~ 383 (742)
.+.+.||+|.|+ ++.+ ++||++.+| ++++|+||||||||||||++ |++.+- .+.-+|
T Consensus 4 ~i~~~~l~k~~~~~~~~l~~vs~~i~~G-ei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy 82 (293)
T COG1131 4 VIEVRNLTKKYGGDKTALDGVSFEVEPG-EIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGY 82 (293)
T ss_pred eeeecceEEEeCCCCEEEeceeEEEcCC-eEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEE
Confidence 457899999999 5665 999999999 99999999999999999999 666431 112246
Q ss_pred ecCCCC--CCc---------------------hHHHHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEEEEcC
Q 004609 384 LPAKNH--PRL---------------------PWFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDE 439 (742)
Q Consensus 384 vPa~~~--~~i---------------------~~~d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLDE 439 (742)
+|+... ..+ ..++.++..+|+.+..++.+++||+||+ |+.++.+++++|+|+||||
T Consensus 83 ~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDE 162 (293)
T COG1131 83 VPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDE 162 (293)
T ss_pred EccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECC
Confidence 676652 111 1245678888888766888999999999 8999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCC-cEEEEEecChh-hhhhcccccceecceEEEec
Q 004609 440 IGSGTDPSEGVALATSILQYLRDRV-GLAVVTTHYAD-LSCLKDKDTRFENAATEFSL 495 (742)
Q Consensus 440 p~~glDp~~~~aL~~all~~l~~~~-~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~~ 495 (742)
||+||||..+..+.+ ++..+.+.| .|||++||+++ +..+||++..+.+|.+.++.
T Consensus 163 Pt~GLDp~~~~~~~~-~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g 219 (293)
T COG1131 163 PTSGLDPESRREIWE-LLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEG 219 (293)
T ss_pred CCcCCCHHHHHHHHH-HHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeC
Confidence 999999999999999 666666666 79999999987 67789999999999998875
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.5e-27 Score=240.11 Aligned_cols=162 Identities=24% Similarity=0.338 Sum_probs=135.7
Q ss_pred cEEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhhh-------h-------hceeecCCC
Q 004609 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS-------K-------AGLYLPAKN 388 (742)
Q Consensus 326 ~l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~ma-------q-------~G~~vPa~~ 388 (742)
.+.++++++.|++..+ ++||++.+| ++++|+||+|||||||||+| ||..+-. + --.+++|+.
T Consensus 3 ~l~i~~v~~~f~~~~vl~~i~L~v~~G-EfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~ 81 (248)
T COG1116 3 LLEIEGVSKSFGGVEVLEDINLSVEKG-EFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQED 81 (248)
T ss_pred eEEEEeeEEEeCceEEeccceeEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccC
Confidence 4678999999998666 999999999 99999999999999999999 4543310 0 012444443
Q ss_pred CCCchH------------------------HHHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCC
Q 004609 389 HPRLPW------------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSG 443 (742)
Q Consensus 389 ~~~i~~------------------------~d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLDEp~~g 443 (742)
.-+|| .+.++..+|+.+..++.++.|||||+ |+++|++++.+|.+||||||++.
T Consensus 82 -~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgA 160 (248)
T COG1116 82 -ALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGA 160 (248)
T ss_pred -cccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcch
Confidence 23333 34568889999999999999999999 99999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecc
Q 004609 444 TDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENA 489 (742)
Q Consensus 444 lDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g 489 (742)
||...+..+.+.+++-..+.+.|++++|||.+ -..++|+++.+.++
T Consensus 161 LDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~ 207 (248)
T COG1116 161 LDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNR 207 (248)
T ss_pred hhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCC
Confidence 99999999999888888888999999999977 45689999888884
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.8e-27 Score=253.26 Aligned_cols=167 Identities=20% Similarity=0.246 Sum_probs=137.3
Q ss_pred cEEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh------------------hhhceee
Q 004609 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------SKAGLYL 384 (742)
Q Consensus 326 ~l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m------------------aq~G~~v 384 (742)
.+.++||+|.|++..+ ++||++.+| ++++|+||||||||||||+| |++.+- .+...|+
T Consensus 7 ~i~i~~l~k~~~~~~~l~~vsl~i~~G-ei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~v 85 (306)
T PRK13537 7 PIDFRNVEKRYGDKLVVDGLSFHVQRG-ECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVV 85 (306)
T ss_pred eEEEEeEEEEECCeEEEecceEEEeCC-cEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEEE
Confidence 5789999999987655 999999999 99999999999999999999 665321 1223467
Q ss_pred cCCCCC--CchHH---------------------HHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEEEEcCC
Q 004609 385 PAKNHP--RLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEI 440 (742)
Q Consensus 385 Pa~~~~--~i~~~---------------------d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLDEp 440 (742)
|+.... .+++. +.++..+++.+..++.+++||+||+ |+.++++++++|++||||||
T Consensus 86 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEP 165 (306)
T PRK13537 86 PQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEP 165 (306)
T ss_pred eccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 766421 12221 2345566777778899999999999 89999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 441 GSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 441 ~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
|+||||..+..+.. ++..+.+.|.|+|++||+++ +..+|+++..+.+|++.+.
T Consensus 166 t~gLD~~~~~~l~~-~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~ 219 (306)
T PRK13537 166 TTGLDPQARHLMWE-RLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAE 219 (306)
T ss_pred CcCCCHHHHHHHHH-HHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999998 55556666899999999987 6679999999999998765
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.6e-27 Score=255.90 Aligned_cols=168 Identities=20% Similarity=0.235 Sum_probs=137.7
Q ss_pred cEEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh------------------hhhceee
Q 004609 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------SKAGLYL 384 (742)
Q Consensus 326 ~l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m------------------aq~G~~v 384 (742)
.++++||++.|++..+ ++||++.+| ++++|+||||||||||||+| |++.+- .+...|+
T Consensus 41 ~i~i~nl~k~y~~~~~l~~is~~i~~G-ei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~v 119 (340)
T PRK13536 41 AIDLAGVSKSYGDKAVVNGLSFTVASG-ECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVV 119 (340)
T ss_pred eEEEEEEEEEECCEEEEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEEEE
Confidence 6889999999988655 999999999 99999999999999999999 665321 1223466
Q ss_pred cCCCCC--CchHH---------------------HHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEEEEcCC
Q 004609 385 PAKNHP--RLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEI 440 (742)
Q Consensus 385 Pa~~~~--~i~~~---------------------d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLDEp 440 (742)
|+.... .+++. +.++..+|+.+..++.+++||+||+ |+.+|++++++|++||||||
T Consensus 120 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEP 199 (340)
T PRK13536 120 PQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEP 199 (340)
T ss_pred eCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 665421 12221 2345667777778899999999999 89999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEec
Q 004609 441 GSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFSL 495 (742)
Q Consensus 441 ~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~~ 495 (742)
|+||||..+..+...+. .+.+.|.|+|++||+++ +..+|+++..+.+|.+.++.
T Consensus 200 t~gLD~~~r~~l~~~l~-~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g 254 (340)
T PRK13536 200 TTGLDPHARHLIWERLR-SLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEG 254 (340)
T ss_pred CCCCCHHHHHHHHHHHH-HHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEc
Confidence 99999999999999554 55666899999999987 56899999999999988753
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.5e-27 Score=238.42 Aligned_cols=165 Identities=20% Similarity=0.188 Sum_probs=131.3
Q ss_pred EEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh-----------------hhhceeecCC
Q 004609 328 TVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------SKAGLYLPAK 387 (742)
Q Consensus 328 ~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m-----------------aq~G~~vPa~ 387 (742)
+++|+++.|+++.+ ++||++.+| ++++|+||||||||||||+| |++.+- .+...|+|+.
T Consensus 2 ~~~~l~~~~~~~~il~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~ 80 (213)
T cd03259 2 ELKGLSKTYGSVRALDDLSLTVEPG-EFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQD 80 (213)
T ss_pred eeeeeEEEeCCeeeecceeEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcCc
Confidence 57899999987655 999999999 99999999999999999999 665321 1112456665
Q ss_pred CCC--CchH---------------------HHHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCC
Q 004609 388 NHP--RLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSG 443 (742)
Q Consensus 388 ~~~--~i~~---------------------~d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLDEp~~g 443 (742)
... .+++ +..++..+|+.+..++.+++|||||+ |+.++++++.+|+++||||||+|
T Consensus 81 ~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~ 160 (213)
T cd03259 81 YALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSA 160 (213)
T ss_pred hhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 311 1111 12345667777778899999999999 89999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEE
Q 004609 444 TDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF 493 (742)
Q Consensus 444 lDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~ 493 (742)
||+.....+...+.+...+.|.++|++||+.+ +..+|+++..+.+|.+..
T Consensus 161 LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~ 211 (213)
T cd03259 161 LDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQ 211 (213)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEe
Confidence 99999999998554433335889999999987 567899999999998753
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.3e-27 Score=237.58 Aligned_cols=164 Identities=19% Similarity=0.260 Sum_probs=131.9
Q ss_pred EEEeeeeeecCCc----ee--cccccccCCceEEEEEeCCCCCcchHHhhHHhh-hh-----------------------
Q 004609 327 MTVGSLSKGISDF----PV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLA-SL----------------------- 376 (742)
Q Consensus 327 l~~~nl~~~y~~~----~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~lGli-~~----------------------- 376 (742)
++++||+|.|+.. .+ ++||++++| ++++|+||+||||||||+++|.+ .+
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~G-e~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~ 80 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAG-EFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKL 80 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCC-CEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHH
Confidence 4578999988542 23 999999999 99999999999999999999544 21
Q ss_pred hhhhceeecCCCC--CCchHH---------------------HHHHHHcCCccccc-cccccchHHHH-HHHHHHHhcCC
Q 004609 377 MSKAGLYLPAKNH--PRLPWF---------------------DLILADIGDHQSLE-QNLSTFSGHIS-RIVDILELVSR 431 (742)
Q Consensus 377 maq~G~~vPa~~~--~~i~~~---------------------d~il~~ig~~~~~~-~~lstfSgg~k-rl~~~~~l~~~ 431 (742)
..+...|++|..+ ..++.. ..++..+|+.+... ++++.|||||+ |+++|++++++
T Consensus 81 R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~ 160 (226)
T COG1136 81 RRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINN 160 (226)
T ss_pred HHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcC
Confidence 1222346666542 122222 23456678887777 88999999999 99999999999
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcccccceecceE
Q 004609 432 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAAT 491 (742)
Q Consensus 432 ~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~l~~~a~~~~~i~~g~~ 491 (742)
|++||.||||.+||+..+..+...+.+...+.|.|+|+||||..++.+|++.+.+.+|.+
T Consensus 161 P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~ 220 (226)
T COG1136 161 PKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKI 220 (226)
T ss_pred CCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCee
Confidence 999999999999999999999995555445568899999999999999999999999973
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.8e-27 Score=231.51 Aligned_cols=158 Identities=20% Similarity=0.322 Sum_probs=133.8
Q ss_pred EEEeeeeeecCCce--e-cccccccCCceEEEEEeCCCCCcchHHhhHHhhhhhhhhceeecCCCCC-------------
Q 004609 327 MTVGSLSKGISDFP--V-PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHP------------- 390 (742)
Q Consensus 327 l~~~nl~~~y~~~~--v-~i~l~l~~g~~~~~ItGpNGsGKSTlLK~lGli~~maq~G~~vPa~~~~------------- 390 (742)
+++.+++|+|++.+ + +++|++..| ++++|.||||+||||+||+| .++..|.+|.+
T Consensus 2 l~v~~l~K~y~~~v~AvrdVSF~ae~G-ei~GlLG~NGAGKTT~LRmi--------atlL~P~~G~v~idg~d~~~~p~~ 72 (245)
T COG4555 2 LEVTDLTKSYGSKVQAVRDVSFEAEEG-EITGLLGENGAGKTTLLRMI--------ATLLIPDSGKVTIDGVDTVRDPSF 72 (245)
T ss_pred eeeeehhhhccCHHhhhhheeEEeccc-eEEEEEcCCCCCchhHHHHH--------HHhccCCCceEEEeecccccChHH
Confidence 56889999999854 2 999999999 99999999999999999999 44444444411
Q ss_pred ----------------Cch------HH---------------HHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCC
Q 004609 391 ----------------RLP------WF---------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRE 432 (742)
Q Consensus 391 ----------------~i~------~~---------------d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~ 432 (742)
+++ || +.+...+++.+.+++....||-||+ ++.+|++++++|
T Consensus 73 vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P 152 (245)
T COG4555 73 VRRKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDP 152 (245)
T ss_pred HhhhcceecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCC
Confidence 111 12 2334566778889999999999999 899999999999
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 433 SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 433 ~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
++++|||||+|||......+.+ ++..+++.|.+|||+||.++ +..+||+++.+++|.+.+.
T Consensus 153 ~i~vlDEP~sGLDi~~~r~~~d-fi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~ 214 (245)
T COG4555 153 SILVLDEPTSGLDIRTRRKFHD-FIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLE 214 (245)
T ss_pred CeEEEcCCCCCccHHHHHHHHH-HHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEc
Confidence 9999999999999999999998 77778888999999999976 7789999999999998875
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.7e-26 Score=237.15 Aligned_cols=167 Identities=23% Similarity=0.275 Sum_probs=133.2
Q ss_pred EEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh------------------hhhceeec
Q 004609 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------SKAGLYLP 385 (742)
Q Consensus 327 l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m------------------aq~G~~vP 385 (742)
+.++|+++.|++..+ ++||++.+| ++++|+||||||||||||+| |++.+- .+...|+|
T Consensus 1 i~~~~~~~~~~~~~il~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (220)
T cd03265 1 IEVENLVKKYGDFEAVRGVSFRVRRG-EIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVF 79 (220)
T ss_pred CEEEEEEEEECCEEeeeceeEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEec
Confidence 357899999987666 999999999 99999999999999999999 665321 11223566
Q ss_pred CCCCC--CchH---------------------HHHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEEEEcCCC
Q 004609 386 AKNHP--RLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIG 441 (742)
Q Consensus 386 a~~~~--~i~~---------------------~d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLDEp~ 441 (742)
+.... .+++ ++.++..+|+.+..++.+++|||||+ |++++++++.+|+++||||||
T Consensus 80 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt 159 (220)
T cd03265 80 QDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPT 159 (220)
T ss_pred CCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 65411 1111 22346667787788899999999999 899999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 442 SGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 442 ~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
+|||+.....+...+.+...+.+.++|++||+.+ +..++++++.+.+|.+...
T Consensus 160 ~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~ 213 (220)
T cd03265 160 IGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAE 213 (220)
T ss_pred cCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEe
Confidence 9999999999998555443334889999999987 5678999999999988654
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.7e-26 Score=248.70 Aligned_cols=167 Identities=20% Similarity=0.235 Sum_probs=135.8
Q ss_pred cEEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh------------------hhhceee
Q 004609 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------SKAGLYL 384 (742)
Q Consensus 326 ~l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m------------------aq~G~~v 384 (742)
.++++||++.|++..+ ++||++.+| ++++|+||||||||||||+| |++.+- .+...|+
T Consensus 4 ~i~~~~l~~~~~~~~~l~~vsl~i~~G-e~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v 82 (303)
T TIGR01288 4 AIDLVGVSKSYGDKVVVNDLSFTIARG-ECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVV 82 (303)
T ss_pred EEEEEeEEEEeCCeEEEcceeEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEEE
Confidence 5789999999987655 999999999 99999999999999999999 665320 1223466
Q ss_pred cCCCCC--CchHH---------------------HHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEEEEcCC
Q 004609 385 PAKNHP--RLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEI 440 (742)
Q Consensus 385 Pa~~~~--~i~~~---------------------d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLDEp 440 (742)
|+.... .+++. +.++..+++.+..++.+++|||||+ |+.++++++.+|+++|||||
T Consensus 83 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEP 162 (303)
T TIGR01288 83 PQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEP 162 (303)
T ss_pred eccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 665421 12222 2345566777778899999999999 89999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 441 GSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 441 ~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
|+||||.....+...+ ..+.+.|.|+|++||+.+ +..+|++++.+.+|.+..+
T Consensus 163 t~gLD~~~~~~l~~~l-~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~ 216 (303)
T TIGR01288 163 TTGLDPHARHLIWERL-RSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAE 216 (303)
T ss_pred CcCCCHHHHHHHHHHH-HHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999854 455666889999999987 5679999999999998765
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-26 Score=235.64 Aligned_cols=161 Identities=22% Similarity=0.241 Sum_probs=129.5
Q ss_pred EeeeeeecCC-cee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh----------------hhhceeecCCC
Q 004609 329 VGSLSKGISD-FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM----------------SKAGLYLPAKN 388 (742)
Q Consensus 329 ~~nl~~~y~~-~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m----------------aq~G~~vPa~~ 388 (742)
++|+++.|++ ..+ ++||++.+| ++++|+||||||||||||++ |++.+- .+...|+|+..
T Consensus 2 ~~~l~~~~~~~~~~l~~v~~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~ 80 (205)
T cd03226 2 IENISFSYKKGTEILDDLSLDLYAG-EIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDV 80 (205)
T ss_pred cccEEEEeCCcCceeeeeeEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecCh
Confidence 5789999976 555 999999999 99999999999999999999 665321 11224666653
Q ss_pred C---CCchH-----------------HHHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHH
Q 004609 389 H---PRLPW-----------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPS 447 (742)
Q Consensus 389 ~---~~i~~-----------------~d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLDEp~~glDp~ 447 (742)
. ...++ +..++..+|+.+..++.+++|||||+ |+.++++++.+|+++||||||+|||+.
T Consensus 81 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~ 160 (205)
T cd03226 81 DYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYK 160 (205)
T ss_pred hhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHH
Confidence 1 11111 23456677888888999999999999 899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceE
Q 004609 448 EGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAAT 491 (742)
Q Consensus 448 ~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~ 491 (742)
....+.. ++..+.+.+.++|++||+.+ +..+|+++..+.+|.+
T Consensus 161 ~~~~l~~-~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i 204 (205)
T cd03226 161 NMERVGE-LIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAI 204 (205)
T ss_pred HHHHHHH-HHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 9999988 55555556889999999987 5568999999988865
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.1e-26 Score=267.26 Aligned_cols=171 Identities=18% Similarity=0.192 Sum_probs=134.0
Q ss_pred CcEEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh------hh--hceeecCCCC---C
Q 004609 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------SK--AGLYLPAKNH---P 390 (742)
Q Consensus 325 ~~l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m------aq--~G~~vPa~~~---~ 390 (742)
..+.++||++.|+++.+ ++||+|.+| ++++|+||||||||||||+| |++.+- .. ...|+|+... .
T Consensus 318 ~~l~~~~l~~~~~~~~il~~vsl~i~~G-e~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~y~~q~~~~l~~ 396 (635)
T PRK11147 318 IVFEMENVNYQIDGKQLVKDFSAQVQRG-DKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVAYFDQHRAELDP 396 (635)
T ss_pred ceEEEeeeEEEECCeEEEcCcEEEEcCC-CEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCCcEEEEEeCcccccCC
Confidence 46889999999988666 999999999 99999999999999999999 654321 10 0135555421 1
Q ss_pred CchHHH-------------------HHHHHcCCc-cccccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHH
Q 004609 391 RLPWFD-------------------LILADIGDH-QSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEG 449 (742)
Q Consensus 391 ~i~~~d-------------------~il~~ig~~-~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLDEp~~glDp~~~ 449 (742)
.+++++ .++..++.. +..++++++|||||+ |++++++++.+|++|||||||+|||+...
T Consensus 397 ~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~ 476 (635)
T PRK11147 397 EKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETL 476 (635)
T ss_pred CCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHH
Confidence 122222 234455654 457889999999999 99999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCcEEEEEecChh-hhhhccccccee-cceEEEecCcccc
Q 004609 450 VALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFE-NAATEFSLETLRP 500 (742)
Q Consensus 450 ~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~-~g~~~~~~~~l~~ 500 (742)
..|..++.++ ++|+|++|||.+ +..+|++++.+. +|.+....+++..
T Consensus 477 ~~l~~~l~~~----~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~ 525 (635)
T PRK11147 477 ELLEELLDSY----QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHD 525 (635)
T ss_pred HHHHHHHHhC----CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHH
Confidence 8888755443 579999999987 567999999997 7988777776654
|
|
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.2e-26 Score=229.28 Aligned_cols=154 Identities=24% Similarity=0.341 Sum_probs=130.9
Q ss_pred EeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhHHhhhhhhhhceeecCCCCC----------------
Q 004609 329 VGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHP---------------- 390 (742)
Q Consensus 329 ~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~lGli~~maq~G~~vPa~~~~---------------- 390 (742)
++|+++.|++..+ ++||++.+| ++++|+||||+||||||++| +|...|.+|..
T Consensus 2 ~~~l~~~~~~~~~l~~~~~~i~~G-~~~~l~G~nGsGKStLl~~i--------~G~~~~~~G~v~~~g~~~~~~~~~~~~ 72 (180)
T cd03214 2 VENLSVGYGGRTVLDDLSLSIEAG-EIVGILGPNGAGKSTLLKTL--------AGLLKPSSGEILLDGKDLASLSPKELA 72 (180)
T ss_pred eeEEEEEECCeeeEeeeEEEECCC-CEEEEECCCCCCHHHHHHHH--------hCCCCCCCcEEEECCEECCcCCHHHHH
Confidence 5789999987555 999999999 99999999999999999999 66655555421
Q ss_pred -CchHHHHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcC-CcEE
Q 004609 391 -RLPWFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDR-VGLA 467 (742)
Q Consensus 391 -~i~~~d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~-~~~v 467 (742)
.++++.+++..+|+.+.+++.+++||+||+ |++++++++.+|+++||||||+|+|+.....+...+ ..++++ +.++
T Consensus 73 ~~i~~~~q~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l-~~~~~~~~~ti 151 (180)
T cd03214 73 RKIAYVPQALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELL-RRLARERGKTV 151 (180)
T ss_pred HHHhHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHH-HHHHHhcCCEE
Confidence 234445577888998888999999999999 899999999999999999999999999999999844 455554 7899
Q ss_pred EEEecChhh-hhhcccccceecceEE
Q 004609 468 VVTTHYADL-SCLKDKDTRFENAATE 492 (742)
Q Consensus 468 litTH~~~l-~~~a~~~~~i~~g~~~ 492 (742)
|++||+.+. ..++++...+.+|.+.
T Consensus 152 ii~sh~~~~~~~~~d~~~~l~~g~i~ 177 (180)
T cd03214 152 VMVLHDLNLAARYADRVILLKDGRIV 177 (180)
T ss_pred EEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 999999884 5899999999998875
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-26 Score=236.48 Aligned_cols=162 Identities=15% Similarity=0.232 Sum_probs=129.1
Q ss_pred EEEeeeeeecCC--cee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhh----------------------hhh
Q 004609 327 MTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL----------------------MSK 379 (742)
Q Consensus 327 l~~~nl~~~y~~--~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~----------------------maq 379 (742)
++++|+++.|++ +.+ ++||++.+| ++++|+||||||||||||+| |++.+ ..+
T Consensus 2 l~~~~l~~~~~~~~~~il~~isl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 2 IRFEQVSKAYPGGHQPALDNLNFHITKG-EMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred eEEEEEEEEecCCCeeEEEeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 578999999964 334 999999999 99999999999999999999 66532 012
Q ss_pred hceeecCCCCC--CchHH---------------------HHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEE
Q 004609 380 AGLYLPAKNHP--RLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLV 435 (742)
Q Consensus 380 ~G~~vPa~~~~--~i~~~---------------------d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~Ll 435 (742)
...|+|+.... .+++. ..++..+|+.+..++.+++|||||+ |++++++++.+|+++
T Consensus 81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~ll 160 (216)
T TIGR00960 81 HIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLL 160 (216)
T ss_pred hceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 23466665421 11221 2345667777788899999999999 899999999999999
Q ss_pred EEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecce
Q 004609 436 LIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAA 490 (742)
Q Consensus 436 LLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~ 490 (742)
||||||+|||+.....+... +..+.+.+.++|++||+.+ +..+|++++.+.+|.
T Consensus 161 llDEPt~~LD~~~~~~l~~~-l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~ 215 (216)
T TIGR00960 161 LADEPTGNLDPELSRDIMRL-FEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGR 215 (216)
T ss_pred EEeCCCCcCCHHHHHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCc
Confidence 99999999999999999984 4555666889999999987 556899998888775
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-26 Score=232.29 Aligned_cols=168 Identities=23% Similarity=0.312 Sum_probs=140.1
Q ss_pred cEEEeeeeeec-CCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhh-----------------------hh
Q 004609 326 EMTVGSLSKGI-SDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-----------------------MS 378 (742)
Q Consensus 326 ~l~~~nl~~~y-~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~-----------------------ma 378 (742)
.++++||++.| +++.. +|||+|++| ++++|+||+|+|||||||++ |++.+ .+
T Consensus 3 ~i~~~nl~k~yp~~~~aL~~Vnl~I~~G-E~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~ 81 (258)
T COG3638 3 MIEVKNLSKTYPGGHQALKDVNLEINQG-EMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRR 81 (258)
T ss_pred eEEEeeeeeecCCCceeeeeEeEEeCCC-cEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHH
Confidence 57899999999 55555 999999999 99999999999999999999 55532 34
Q ss_pred hhceeecCCCC--CCchHHH-----------------------------HHHHHcCCccccccccccchHHHH-HHHHHH
Q 004609 379 KAGLYLPAKNH--PRLPWFD-----------------------------LILADIGDHQSLEQNLSTFSGHIS-RIVDIL 426 (742)
Q Consensus 379 q~G~~vPa~~~--~~i~~~d-----------------------------~il~~ig~~~~~~~~lstfSgg~k-rl~~~~ 426 (742)
++| ++++..+ .++.++. ..|.++|+.+...+..++|||||+ |+++|+
T Consensus 82 ~iG-mIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIAR 160 (258)
T COG3638 82 DIG-MIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIAR 160 (258)
T ss_pred hce-eEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHH
Confidence 555 4455442 1112211 237788999999999999999998 999999
Q ss_pred HhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChhhh-hhcccccceecceEEEec
Q 004609 427 ELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLS-CLKDKDTRFENAATEFSL 495 (742)
Q Consensus 427 ~l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~l~-~~a~~~~~i~~g~~~~~~ 495 (742)
+++.+|+++|.|||++.|||.....+++.+.+.-.+.|.|+|++-|+.+++ .||++++.+.+|++.||.
T Consensus 161 aL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg 230 (258)
T COG3638 161 ALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDG 230 (258)
T ss_pred HHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeC
Confidence 999999999999999999999999999966555556789999999999965 699999999999999984
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.3e-26 Score=236.15 Aligned_cols=165 Identities=21% Similarity=0.247 Sum_probs=130.9
Q ss_pred EEeeeeeecCC----cee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh--------------hhhceeecC
Q 004609 328 TVGSLSKGISD----FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------SKAGLYLPA 386 (742)
Q Consensus 328 ~~~nl~~~y~~----~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m--------------aq~G~~vPa 386 (742)
+++|+++.|++ ..+ ++||++.+| ++++|+||||||||||||+| |++.+- .+...|+|+
T Consensus 2 ~~~~l~~~~~~~~~~~~il~~vs~~i~~G-~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q 80 (220)
T cd03293 2 EVRNVSKTYGGGGGAVTALEDISLSVEEG-EFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQ 80 (220)
T ss_pred eEEEEEEEcCCCCcceEEEeceeEEEeCC-cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEec
Confidence 57899999976 455 999999999 99999999999999999999 655321 112235665
Q ss_pred CCC--CCchH---------------------HHHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCC
Q 004609 387 KNH--PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGS 442 (742)
Q Consensus 387 ~~~--~~i~~---------------------~d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLDEp~~ 442 (742)
... ..+++ ++.++..+|+.+.+++.+++|||||+ |+.++++++.+|+++||||||+
T Consensus 81 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~ 160 (220)
T cd03293 81 QDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFS 160 (220)
T ss_pred ccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 431 11111 12345667777778899999999999 8999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhccccccee--cceEEE
Q 004609 443 GTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFE--NAATEF 493 (742)
Q Consensus 443 glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~--~g~~~~ 493 (742)
|||+.....+...+.+...+.+.++|++||+.+ +..+|+++..+. +|.+..
T Consensus 161 ~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~ 214 (220)
T cd03293 161 ALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVA 214 (220)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEE
Confidence 999999999999555443455789999999987 678999999998 687754
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-26 Score=236.76 Aligned_cols=162 Identities=21% Similarity=0.265 Sum_probs=128.7
Q ss_pred EEEeeeeeecCC----cee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh----------------------
Q 004609 327 MTVGSLSKGISD----FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM---------------------- 377 (742)
Q Consensus 327 l~~~nl~~~y~~----~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m---------------------- 377 (742)
+.++||++.|++ +.+ ++||++.+| ++++|+||||||||||||+| |++.+-
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G-~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 79 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKG-EFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAF 79 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCC-CEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHH
Confidence 357899999976 455 999999999 99999999999999999999 665320
Q ss_pred -hhhceeecCCCCC--CchH---------------------HHHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCC
Q 004609 378 -SKAGLYLPAKNHP--RLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRE 432 (742)
Q Consensus 378 -aq~G~~vPa~~~~--~i~~---------------------~d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~ 432 (742)
.+...|+|+.... .+++ ++.++..+|+.+.+++.+++|||||+ |++++++++.+|
T Consensus 80 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p 159 (218)
T cd03255 80 RRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDP 159 (218)
T ss_pred HhhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCC
Confidence 1123456655311 1111 23456677887778899999999999 899999999999
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhhcccccceecce
Q 004609 433 SLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYADLSCLKDKDTRFENAA 490 (742)
Q Consensus 433 ~LlLLDEp~~glDp~~~~aL~~all~~l~~-~~~~vlitTH~~~l~~~a~~~~~i~~g~ 490 (742)
+++||||||+|||+.....+...+. .+.+ .+.++|++||+.+...+|++++.+.+|.
T Consensus 160 ~lllLDEP~~~LD~~~~~~l~~~l~-~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~ 217 (218)
T cd03255 160 KIILADEPTGNLDSETGKEVMELLR-ELNKEAGTTIVVVTHDPELAEYADRIIELRDGK 217 (218)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHH-HHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCc
Confidence 9999999999999999999998554 4554 5889999999988555899988888775
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.4e-26 Score=238.35 Aligned_cols=166 Identities=20% Similarity=0.243 Sum_probs=132.7
Q ss_pred EEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh----------------------hhhc
Q 004609 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM----------------------SKAG 381 (742)
Q Consensus 327 l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m----------------------aq~G 381 (742)
++++|+++.|++..+ ++||++.+| ++++|+||||||||||||+| |++.+- .+..
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~G-e~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i 79 (235)
T cd03261 1 IELRGLTKSFGGRTVLKGVDLDVRRG-EILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRM 79 (235)
T ss_pred CeEEEEEEEECCEEEEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcce
Confidence 357899999987655 999999999 99999999999999999999 655321 1123
Q ss_pred eeecCCCCC--CchHH----------------------HHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEEE
Q 004609 382 LYLPAKNHP--RLPWF----------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVL 436 (742)
Q Consensus 382 ~~vPa~~~~--~i~~~----------------------d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlL 436 (742)
.|+|+.... .+++. ..++..+|+.+..++.+++|||||+ |+.++++++.+|+++|
T Consensus 80 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~lll 159 (235)
T cd03261 80 GMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLL 159 (235)
T ss_pred EEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 466665311 11221 2345666777778899999999999 8999999999999999
Q ss_pred EcCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 437 IDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 437 LDEp~~glDp~~~~aL~~all~~l~~-~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
|||||+|||+.....+...+ ..+.+ .+.|+|++||+.+ +..+|++++.+.+|.+...
T Consensus 160 lDEPt~~LD~~~~~~l~~~l-~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~ 218 (235)
T cd03261 160 YDEPTAGLDPIASGVIDDLI-RSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAE 218 (235)
T ss_pred ecCCcccCCHHHHHHHHHHH-HHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEe
Confidence 99999999999999999854 44554 5889999999987 5678999999999988654
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-26 Score=232.40 Aligned_cols=167 Identities=21% Similarity=0.305 Sum_probs=138.9
Q ss_pred EEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhh---------------hhhhceeecCCC
Q 004609 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL---------------MSKAGLYLPAKN 388 (742)
Q Consensus 327 l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~---------------maq~G~~vPa~~ 388 (742)
+++++|+|+||++.+ ++||++++| ++++++||||+||||++|+| |++.+ +.....|.|.+.
T Consensus 3 L~ie~vtK~Fg~k~av~~isf~v~~G-~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIGyLPEER 81 (300)
T COG4152 3 LEIEGVTKSFGDKKAVDNISFEVPPG-EIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLPEER 81 (300)
T ss_pred eEEecchhccCceeeecceeeeecCC-eEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcccChhhh
Confidence 678999999999776 999999999 99999999999999999999 55543 111223555443
Q ss_pred --CCCchHHH---------------------HHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCC
Q 004609 389 --HPRLPWFD---------------------LILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGT 444 (742)
Q Consensus 389 --~~~i~~~d---------------------~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLDEp~~gl 444 (742)
+..+.+.| ..+.+++......+++.+||-|++ ++.++.+++++|.|||||||++||
T Consensus 82 GLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGL 161 (300)
T COG4152 82 GLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGL 161 (300)
T ss_pred ccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCC
Confidence 12333333 347777888888999999999988 899999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEec
Q 004609 445 DPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFSL 495 (742)
Q Consensus 445 Dp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~~ 495 (742)
||.....|-.++.+ +++.|.|||++||.++ ...+||+...+..|..+++.
T Consensus 162 DPVN~elLk~~I~~-lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G 212 (300)
T COG4152 162 DPVNVELLKDAIFE-LKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYG 212 (300)
T ss_pred ChhhHHHHHHHHHH-HHhcCCEEEEecchHHHHHHHhhhhheecCCceEEec
Confidence 99999999996665 6888999999999998 77899999999999887763
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.7e-26 Score=234.19 Aligned_cols=166 Identities=14% Similarity=0.192 Sum_probs=131.4
Q ss_pred EEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh-----------------hhhceeecC
Q 004609 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------SKAGLYLPA 386 (742)
Q Consensus 327 l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m-----------------aq~G~~vPa 386 (742)
+.++|+++.|+++.+ ++||++.+| ++++|+||||+|||||||+| |++.+- .+...|+|+
T Consensus 1 i~~~~l~~~~~~~~~l~~is~~i~~G-e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q 79 (213)
T cd03301 1 VELENVTKRFGNVTALDDLNLDIADG-EFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQ 79 (213)
T ss_pred CEEEeeEEEECCeeeeeceEEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEec
Confidence 357899999987665 999999999 99999999999999999999 665321 011235555
Q ss_pred CCCC--CchH---------------------HHHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCC
Q 004609 387 KNHP--RLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGS 442 (742)
Q Consensus 387 ~~~~--~i~~---------------------~d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLDEp~~ 442 (742)
.... ..++ ++.++..+|+.+.+++.+++|||||+ |++++++++.+|+++||||||+
T Consensus 80 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt~ 159 (213)
T cd03301 80 NYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLS 159 (213)
T ss_pred ChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 4311 1111 12346667777788999999999999 8999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEE
Q 004609 443 GTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF 493 (742)
Q Consensus 443 glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~ 493 (742)
|||+.....+...+.+...+.+.|+|++||+.+ +..+++++..+.+|.+..
T Consensus 160 ~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~ 211 (213)
T cd03301 160 NLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQ 211 (213)
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEe
Confidence 999999999998555433345889999999987 567899999999988754
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-26 Score=234.33 Aligned_cols=166 Identities=20% Similarity=0.253 Sum_probs=133.6
Q ss_pred EEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhh-------------------hhhhceee
Q 004609 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKAGLYL 384 (742)
Q Consensus 327 l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~-------------------maq~G~~v 384 (742)
++++||+|.|+++.+ ++||+++.| ++++++||+||||||+||+| .|+.+ |.+..+||
T Consensus 2 I~~~nvsk~y~~~~av~~v~l~I~~g-ef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYv 80 (309)
T COG1125 2 IEFENVSKRYGNKKAVDDVNLTIEEG-EFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYV 80 (309)
T ss_pred ceeeeeehhcCCceeeeeeeEEecCC-eEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhh
Confidence 578999999998665 999999999 99999999999999999999 34421 11111222
Q ss_pred cCCC--CCCchH---------------------HHHHHHHcCCc--cccccccccchHHHH-HHHHHHHhcCCCcEEEEc
Q 004609 385 PAKN--HPRLPW---------------------FDLILADIGDH--QSLEQNLSTFSGHIS-RIVDILELVSRESLVLID 438 (742)
Q Consensus 385 Pa~~--~~~i~~---------------------~d~il~~ig~~--~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLD 438 (742)
-+.- ...+++ .+.++..+|++ +..+++++.|||||+ |+..+++++.+|+++|+|
T Consensus 81 iQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMD 160 (309)
T COG1125 81 IQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMD 160 (309)
T ss_pred hhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEeec
Confidence 2221 111121 34567777875 588999999999998 999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEE
Q 004609 439 EIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF 493 (742)
Q Consensus 439 Ep~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~ 493 (742)
||++.+||..+..|.+-+.+.-++.+.|+||+|||++ -..++|++..+..|.+.-
T Consensus 161 EPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q 216 (309)
T COG1125 161 EPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQ 216 (309)
T ss_pred CCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEE
Confidence 9999999999999999777766667999999999987 457999999999998764
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.4e-26 Score=240.76 Aligned_cols=169 Identities=17% Similarity=0.209 Sum_probs=136.7
Q ss_pred CcEEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh--------------hhhceeecCC
Q 004609 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------SKAGLYLPAK 387 (742)
Q Consensus 325 ~~l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m--------------aq~G~~vPa~ 387 (742)
-.++++|+++.|+++.+ ++||++.+| ++++|+||||||||||||+| |++.+- .+...|+|+.
T Consensus 11 ~~l~i~~l~~~~~~~~il~~isl~i~~G-e~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~ 89 (257)
T PRK11247 11 TPLLLNAVSKRYGERTVLNQLDLHIPAG-QFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQD 89 (257)
T ss_pred CcEEEEEEEEEECCcceeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEecC
Confidence 46889999999987655 999999999 99999999999999999999 665321 1112356665
Q ss_pred CCC--CchH---------------HHHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHH
Q 004609 388 NHP--RLPW---------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEG 449 (742)
Q Consensus 388 ~~~--~i~~---------------~d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLDEp~~glDp~~~ 449 (742)
... ..++ +..++..+|+.+..++.+++|||||+ |+.++++++.+|+++||||||+|||+...
T Consensus 90 ~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~ 169 (257)
T PRK11247 90 ARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTR 169 (257)
T ss_pred ccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHH
Confidence 311 1112 23456677888888999999999999 89999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 450 VALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 450 ~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
..+...+.+...+.+.++|++||+.+ +..+|++++.+.+|.+..+
T Consensus 170 ~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~ 215 (257)
T PRK11247 170 IEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLD 215 (257)
T ss_pred HHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEee
Confidence 99998555544555889999999987 5678999999999988764
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.8e-26 Score=233.36 Aligned_cols=165 Identities=23% Similarity=0.270 Sum_probs=132.5
Q ss_pred EEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh-----------------hhhceeecC
Q 004609 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------SKAGLYLPA 386 (742)
Q Consensus 327 l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m-----------------aq~G~~vPa 386 (742)
++++|+++.|++..+ ++||++.+| ++++|+||||||||||||++ |+..+- .+...|+|+
T Consensus 1 l~~~~l~~~~~~~~~l~~~~~~i~~G-~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q 79 (208)
T cd03268 1 LKTNDLTKTYGKKRVLDDISLHVKKG-EIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIE 79 (208)
T ss_pred CEEEEEEEEECCeEeEeeeEEEEcCC-cEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecC
Confidence 357899999977655 999999999 99999999999999999999 554320 112346666
Q ss_pred CCCC--CchH-----------------HHHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCH
Q 004609 387 KNHP--RLPW-----------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDP 446 (742)
Q Consensus 387 ~~~~--~i~~-----------------~d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLDEp~~glDp 446 (742)
.... .+++ ++.++..+++.+.+++.+++|||||+ |++++++++.+|+++||||||+|||+
T Consensus 80 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~ 159 (208)
T cd03268 80 APGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDP 159 (208)
T ss_pred CCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCH
Confidence 5421 1122 23345667777788899999999999 89999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEE
Q 004609 447 SEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF 493 (742)
Q Consensus 447 ~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~ 493 (742)
.....+.. ++..+.+.+.++|++||+.+ +..++++...+.+|.+..
T Consensus 160 ~~~~~l~~-~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~ 206 (208)
T cd03268 160 DGIKELRE-LILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIE 206 (208)
T ss_pred HHHHHHHH-HHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEe
Confidence 99999998 55555556889999999988 557899999999998753
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.8e-26 Score=236.10 Aligned_cols=166 Identities=22% Similarity=0.283 Sum_probs=133.2
Q ss_pred EEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh-------------------h-hhcee
Q 004609 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------S-KAGLY 383 (742)
Q Consensus 327 l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m-------------------a-q~G~~ 383 (742)
+.++|+++.|+++.+ ++||++.+| ++++|+||||||||||||+| |++.+- . +...|
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (232)
T cd03218 1 LRAENLSKRYGKRKVVNGVSLSVKQG-EIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGY 79 (232)
T ss_pred CeEEEEEEEeCCEEeeccceeEecCC-cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEE
Confidence 357899999987655 999999999 99999999999999999999 665320 1 11235
Q ss_pred ecCCCCC--CchH---------------------HHHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEEEEcC
Q 004609 384 LPAKNHP--RLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDE 439 (742)
Q Consensus 384 vPa~~~~--~i~~---------------------~d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLDE 439 (742)
+|+.... .+++ ++.++..+|..+..++.+++|||||+ |++++++++.+|+++||||
T Consensus 80 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDE 159 (232)
T cd03218 80 LPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDE 159 (232)
T ss_pred ecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecC
Confidence 6665411 1111 12345566777778899999999999 8999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 440 IGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 440 p~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
||+|||+.....+.. ++..+.+.+.|+|++||+.+ +..+|+++..+.+|.+...
T Consensus 160 Pt~~LD~~~~~~~~~-~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~ 214 (232)
T cd03218 160 PFAGVDPIAVQDIQK-IIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAE 214 (232)
T ss_pred CcccCCHHHHHHHHH-HHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEE
Confidence 999999999999998 55556666889999999986 7789999999999988643
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.1e-26 Score=233.40 Aligned_cols=165 Identities=19% Similarity=0.270 Sum_probs=131.2
Q ss_pred EEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh---------------hhhceeecCCC
Q 004609 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM---------------SKAGLYLPAKN 388 (742)
Q Consensus 327 l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m---------------aq~G~~vPa~~ 388 (742)
++++|+++.|+++.+ ++||++.+| ++++|+|||||||||||++| |+..+- .....|+|+..
T Consensus 1 l~~~~l~~~~~~~~~l~~v~~~i~~G-~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~ 79 (210)
T cd03269 1 LEVENVTKRFGRVTALDDISFSVEKG-EIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEER 79 (210)
T ss_pred CEEEEEEEEECCEEEEeeeEEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEeccCC
Confidence 357899999987655 899999999 99999999999999999999 655321 11123566553
Q ss_pred CC--CchH---------------------HHHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCC
Q 004609 389 HP--RLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGT 444 (742)
Q Consensus 389 ~~--~i~~---------------------~d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLDEp~~gl 444 (742)
.. .+++ +.+++..+|+...+++.+.+|||||+ |+.++++++.+|+++||||||+|+
T Consensus 80 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~L 159 (210)
T cd03269 80 GLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGL 159 (210)
T ss_pred cCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCC
Confidence 11 1121 22345566777778889999999999 899999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEE
Q 004609 445 DPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF 493 (742)
Q Consensus 445 Dp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~ 493 (742)
|+.....+... +..+.+.+.++|++||+.+ +..++++++.+.+|.+..
T Consensus 160 D~~~~~~~~~~-l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~ 208 (210)
T cd03269 160 DPVNVELLKDV-IRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVL 208 (210)
T ss_pred CHHHHHHHHHH-HHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEe
Confidence 99999999984 4455556889999999987 557899999999988753
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=99.93 E-value=4e-26 Score=233.72 Aligned_cols=165 Identities=22% Similarity=0.311 Sum_probs=132.7
Q ss_pred EEEeeeeeecCCc----ee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh------------------hhhc
Q 004609 327 MTVGSLSKGISDF----PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------SKAG 381 (742)
Q Consensus 327 l~~~nl~~~y~~~----~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m------------------aq~G 381 (742)
+.++|+++.|++. .+ ++||++.+| ++++|+||||||||||||+| |++.+- .+..
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i 80 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPG-EVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRL 80 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCC-cEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhE
Confidence 5688999999865 45 999999999 99999999999999999999 665321 1123
Q ss_pred eeecCCCCC--CchH---------------------HHHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEEEE
Q 004609 382 LYLPAKNHP--RLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLI 437 (742)
Q Consensus 382 ~~vPa~~~~--~i~~---------------------~d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLL 437 (742)
.|+|+.... .+++ ++.++..+|+.+.+++.+++|||||+ |++++++++.+|+++||
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illl 160 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLL 160 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEE
Confidence 356665311 1111 12356677888888999999999999 89999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEE
Q 004609 438 DEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF 493 (742)
Q Consensus 438 DEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~ 493 (742)
||||+|||+.....+...+ ..+.+.+.|+|++||+.+ +..+++++..+.+|.+..
T Consensus 161 DEPt~~LD~~~~~~l~~~l-~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~ 216 (218)
T cd03266 161 DEPTTGLDVMATRALREFI-RQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVY 216 (218)
T ss_pred cCCCcCCCHHHHHHHHHHH-HHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEee
Confidence 9999999999999999854 455666889999999987 567899999999998754
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.5e-26 Score=221.68 Aligned_cols=167 Identities=16% Similarity=0.226 Sum_probs=135.4
Q ss_pred EEEeeeeeecCCce-e--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhh----------------------hhhhh
Q 004609 327 MTVGSLSKGISDFP-V--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLAS----------------------LMSKA 380 (742)
Q Consensus 327 l~~~nl~~~y~~~~-v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~----------------------~maq~ 380 (742)
+.++||+|.|++.+ . ++||++++| +++-|+||+|||||||||+| +... ++.+.
T Consensus 2 I~f~~V~k~Y~~g~~aL~~vs~~i~~G-ef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~ 80 (223)
T COG2884 2 IRFENVSKAYPGGREALRDVSFHIPKG-EFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQ 80 (223)
T ss_pred eeehhhhhhcCCCchhhhCceEeecCc-eEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhhe
Confidence 57899999996644 3 999999999 99999999999999999999 1111 12222
Q ss_pred ceeecCCCC--CCchHHH---------------------HHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEEE
Q 004609 381 GLYLPAKNH--PRLPWFD---------------------LILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVL 436 (742)
Q Consensus 381 G~~vPa~~~--~~i~~~d---------------------~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlL 436 (742)
...|+++.. ...+++| .++..+|+.+..+.-+++||||++ |+++|++.+++|.+||
T Consensus 81 IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLl 160 (223)
T COG2884 81 IGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLL 160 (223)
T ss_pred eeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEe
Confidence 223444321 1112233 347788999999999999999998 9999999999999999
Q ss_pred EcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChhh-hhhcccccceecceEEEec
Q 004609 437 IDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL-SCLKDKDTRFENAATEFSL 495 (742)
Q Consensus 437 LDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~l-~~~a~~~~~i~~g~~~~~~ 495 (742)
.||||.+|||.....|+. +++.+...|.||+++|||.++ ..+..+...+.+|.+..|.
T Consensus 161 ADEPTGNLDp~~s~~im~-lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~ 219 (223)
T COG2884 161 ADEPTGNLDPDLSWEIMR-LFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDE 219 (223)
T ss_pred ecCCCCCCChHHHHHHHH-HHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEecc
Confidence 999999999999999999 888899999999999999985 4577778889999887664
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=99.93 E-value=3e-26 Score=233.46 Aligned_cols=159 Identities=23% Similarity=0.256 Sum_probs=126.4
Q ss_pred EeeeeeecCC--cee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh-------------------hhhceee
Q 004609 329 VGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAGLYL 384 (742)
Q Consensus 329 ~~nl~~~y~~--~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m-------------------aq~G~~v 384 (742)
++|+++.|++ +.+ ++||++.+| ++++|+||||||||||||+| |++.+- .+...|+
T Consensus 2 ~~~l~~~~~~~~~~il~~vs~~i~~G-~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (211)
T cd03225 2 LKNLSFSYPDGARPALDDISLTIKKG-EFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLV 80 (211)
T ss_pred ceeEEEecCCCCeeeecceEEEEcCC-cEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEE
Confidence 5789999976 555 999999999 99999999999999999999 655320 1223466
Q ss_pred cCCCC---CCchHH---------------------HHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEEEEcC
Q 004609 385 PAKNH---PRLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDE 439 (742)
Q Consensus 385 Pa~~~---~~i~~~---------------------d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLDE 439 (742)
|+... ...++. +.++..+|+...+++.++.|||||+ |++++++++.+|+++||||
T Consensus 81 ~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDE 160 (211)
T cd03225 81 FQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDE 160 (211)
T ss_pred ecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 66531 111221 2345667777778899999999999 8999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecc
Q 004609 440 IGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENA 489 (742)
Q Consensus 440 p~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g 489 (742)
||+|||+.....+...+. .+.+.+.++|++||+.+ +..+|+++..+.+|
T Consensus 161 Pt~~LD~~~~~~~~~~l~-~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G 210 (211)
T cd03225 161 PTAGLDPAGRRELLELLK-KLKAEGKTIIIVTHDLDLLLELADRVIVLEDG 210 (211)
T ss_pred CcccCCHHHHHHHHHHHH-HHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 999999999999999554 45555889999999987 55679998888776
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.9e-26 Score=244.63 Aligned_cols=183 Identities=21% Similarity=0.294 Sum_probs=146.5
Q ss_pred cEEEeeeeeecCCc-ee-cccccccCCceEEEEEeCCCCCcchHHhhHHhhhhhhhhceeecCCC---------------
Q 004609 326 EMTVGSLSKGISDF-PV-PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKN--------------- 388 (742)
Q Consensus 326 ~l~~~nl~~~y~~~-~v-~i~l~l~~g~~~~~ItGpNGsGKSTlLK~lGli~~maq~G~~vPa~~--------------- 388 (742)
.++++||+|.||+. .+ ++|+++..| ++++|+||||||||||||+| +|+..|.+|
T Consensus 3 ~i~l~~v~K~yg~~~~l~~i~l~i~~G-ef~vllGPSGcGKSTlLr~I--------AGLe~~~~G~I~i~g~~vt~l~P~ 73 (338)
T COG3839 3 ELELKNVRKSFGSFEVLKDVNLDIEDG-EFVVLLGPSGCGKSTLLRMI--------AGLEEPTSGEILIDGRDVTDLPPE 73 (338)
T ss_pred EEEEeeeEEEcCCceeeecceEEEcCC-CEEEEECCCCCCHHHHHHHH--------hCCCCCCCceEEECCEECCCCChh
Confidence 47899999999987 66 999999999 99999999999999999999 555555544
Q ss_pred -------------CCCchHHHH---------------------HHHHcCCccccccccccchHHHH-HHHHHHHhcCCCc
Q 004609 389 -------------HPRLPWFDL---------------------ILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRES 433 (742)
Q Consensus 389 -------------~~~i~~~d~---------------------il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~ 433 (742)
+..++++++ +...+++++.+++.+++|||||+ |++++++++.+|+
T Consensus 74 ~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~ 153 (338)
T COG3839 74 KRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPK 153 (338)
T ss_pred HCCEEEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCC
Confidence 233444444 35567889999999999999999 9999999999999
Q ss_pred EEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCh-hhhhhcccccceecceEEEecCccccchhhhcCCCCCc
Q 004609 434 LVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYA-DLSCLKDKDTRFENAATEFSLETLRPTYRILWGSTGDS 512 (742)
Q Consensus 434 LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~-~l~~~a~~~~~i~~g~~~~~~~~l~~~y~l~~g~~~~s 512 (742)
++|||||.++||..-+..+..-+.+...+.+.|+|++|||. +...++|++..+.+|.+.-. ++-...|. ..
T Consensus 154 v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~-g~p~ely~-------~P 225 (338)
T COG3839 154 VFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQV-GTPLELYE-------RP 225 (338)
T ss_pred EEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeec-CChHHHhh-------Cc
Confidence 99999999999999999988855554444588999999995 46779999999998877532 23233343 23
Q ss_pred hHHHHHHHCCCCH
Q 004609 513 NALNIAKSIGFDR 525 (742)
Q Consensus 513 ~a~~ia~~~gl~~ 525 (742)
....+|...|.|+
T Consensus 226 ~n~fVA~FiG~p~ 238 (338)
T COG3839 226 ANLFVAGFIGSPP 238 (338)
T ss_pred cchhhhhhcCChh
Confidence 3456788888765
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.3e-26 Score=231.85 Aligned_cols=165 Identities=18% Similarity=0.249 Sum_probs=131.4
Q ss_pred EEeeeeeecCCceecccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh-----------------hhhceeecCCCC
Q 004609 328 TVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------SKAGLYLPAKNH 389 (742)
Q Consensus 328 ~~~nl~~~y~~~~v~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m-----------------aq~G~~vPa~~~ 389 (742)
.++|+++.|++..+++||++.+| ++++|+||||||||||||+| |+..+- .+...|+|+...
T Consensus 2 ~~~~l~~~~~~~~~~is~~i~~G-e~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~ 80 (211)
T cd03298 2 RLDKIRFSYGEQPMHFDLTFAQG-EITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQENN 80 (211)
T ss_pred EEEeEEEEeCCEecceEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEecccc
Confidence 57899999987666999999999 99999999999999999999 555321 011235565531
Q ss_pred C--CchH---------------------HHHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCC
Q 004609 390 P--RLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTD 445 (742)
Q Consensus 390 ~--~i~~---------------------~d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLDEp~~glD 445 (742)
. .+++ +..++..+|+....++.+.+||+||+ |+.++++++.+|+++||||||+|+|
T Consensus 81 ~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD 160 (211)
T cd03298 81 LFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALD 160 (211)
T ss_pred cCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 1 1111 22345666777778889999999999 8999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEE
Q 004609 446 PSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF 493 (742)
Q Consensus 446 p~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~ 493 (742)
+.....+...+.+...+.+.++|++||+.+ +..+|++++.+.+|.+..
T Consensus 161 ~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~ 209 (211)
T cd03298 161 PALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAA 209 (211)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEee
Confidence 999999999555443445889999999988 557899999999998753
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.8e-26 Score=244.31 Aligned_cols=165 Identities=19% Similarity=0.287 Sum_probs=135.6
Q ss_pred EEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh------------------hhhceeec
Q 004609 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------SKAGLYLP 385 (742)
Q Consensus 327 l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m------------------aq~G~~vP 385 (742)
+.++|+++.|++..+ ++||++++| ++++|+||||||||||||++ |++.+- .+...|+|
T Consensus 3 l~~~~l~~~~~~~~~l~~is~~i~~G-ei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~ 81 (301)
T TIGR03522 3 IRVSSLTKLYGTQNALDEVSFEAQKG-RIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLP 81 (301)
T ss_pred EEEEEEEEEECCEEEEEEeEEEEeCC-eEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEec
Confidence 578999999987665 999999999 99999999999999999999 665321 12234666
Q ss_pred CCCCC--CchH---------------------HHHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEEEEcCCC
Q 004609 386 AKNHP--RLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIG 441 (742)
Q Consensus 386 a~~~~--~i~~---------------------~d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLDEp~ 441 (742)
+.... .+++ ++.++..+|+.+..++.+++||+||+ |+.++++++++|+++||||||
T Consensus 82 q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt 161 (301)
T TIGR03522 82 EHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPT 161 (301)
T ss_pred CCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 65421 1111 23446667888888999999999999 899999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 442 SGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 442 ~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
+||||.....+... +..+++ +.|+|++||+++ +..+|+++..+.+|.+.+.
T Consensus 162 ~gLD~~~~~~l~~~-l~~~~~-~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~ 213 (301)
T TIGR03522 162 TGLDPNQLVEIRNV-IKNIGK-DKTIILSTHIMQEVEAICDRVIIINKGKIVAD 213 (301)
T ss_pred ccCCHHHHHHHHHH-HHHhcC-CCEEEEEcCCHHHHHHhCCEEEEEECCEEEEe
Confidence 99999999999984 455665 689999999987 7789999999999999865
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.9e-26 Score=234.01 Aligned_cols=167 Identities=17% Similarity=0.178 Sum_probs=133.3
Q ss_pred EEEeeeeeecCCc----ee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh----------------------
Q 004609 327 MTVGSLSKGISDF----PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM---------------------- 377 (742)
Q Consensus 327 l~~~nl~~~y~~~----~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m---------------------- 377 (742)
+.++|+++.|+++ ++ ++||++.+| ++++|+||||||||||||+| |++.+-
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~G-e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKG-EIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKA 80 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHH
Confidence 5688999999765 55 999999999 99999999999999999999 555320
Q ss_pred hhhceeecCCCCC--CchHH---------------------HHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCc
Q 004609 378 SKAGLYLPAKNHP--RLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRES 433 (742)
Q Consensus 378 aq~G~~vPa~~~~--~i~~~---------------------d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~ 433 (742)
.+...|+|+.... .+++. ..++..+|+.+.+++.+++||+||+ |++++++++.+|+
T Consensus 81 ~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 160 (233)
T cd03258 81 RRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPK 160 (233)
T ss_pred HhheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCC
Confidence 1223466665421 12222 2345566777778899999999999 8999999999999
Q ss_pred EEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 434 LVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 434 LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
++||||||+|||+.....+...+.+...+.|.|+|++||+.+ +..++++.+.+.+|++...
T Consensus 161 lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~ 222 (233)
T cd03258 161 VLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEE 222 (233)
T ss_pred EEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999998555433344889999999987 4678999999999988654
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.1e-26 Score=232.32 Aligned_cols=161 Identities=17% Similarity=0.223 Sum_probs=127.6
Q ss_pred EEEeeeeeec-CCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhh----------------------hhhh
Q 004609 327 MTVGSLSKGI-SDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL----------------------MSKA 380 (742)
Q Consensus 327 l~~~nl~~~y-~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~----------------------maq~ 380 (742)
+.++|+++.| ++..+ ++||++.+| ++++|+||||||||||||+| |++.+ +.+.
T Consensus 2 l~~~~l~~~~~~~~~il~~is~~i~~G-~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (214)
T TIGR02673 2 IEFHNVSKAYPGGVAALHDVSLHIRKG-EFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRR 80 (214)
T ss_pred EEEEeeeEEeCCCceeecceeEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhh
Confidence 5789999999 45444 999999999 99999999999999999999 65432 1112
Q ss_pred ceeecCCCCC--CchH---------------------HHHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEEE
Q 004609 381 GLYLPAKNHP--RLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVL 436 (742)
Q Consensus 381 G~~vPa~~~~--~i~~---------------------~d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlL 436 (742)
..|+|+.... .+++ +..++..+|+.+..++.+++|||||+ |++++++++.+|+++|
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lll 160 (214)
T TIGR02673 81 IGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLL 160 (214)
T ss_pred eEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEE
Confidence 3466655311 1111 12345666777778889999999999 8999999999999999
Q ss_pred EcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecc
Q 004609 437 IDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENA 489 (742)
Q Consensus 437 LDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g 489 (742)
|||||+|+|+.....+...+. .+.+.+.++|++||+.+ +..+|+++..+.+|
T Consensus 161 LDEPt~~LD~~~~~~l~~~l~-~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G 213 (214)
T TIGR02673 161 ADEPTGNLDPDLSERILDLLK-RLNKRGTTVIVATHDLSLVDRVAHRVIILDDG 213 (214)
T ss_pred EeCCcccCCHHHHHHHHHHHH-HHHHcCCEEEEEeCCHHHHHHhcCEEEEecCC
Confidence 999999999999999998555 45556889999999987 56689998888776
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.5e-26 Score=234.46 Aligned_cols=167 Identities=20% Similarity=0.218 Sum_probs=132.8
Q ss_pred EEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh------------------hhhceeec
Q 004609 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------SKAGLYLP 385 (742)
Q Consensus 327 l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m------------------aq~G~~vP 385 (742)
+.++|+++.|+++.+ ++||++.+| ++++|+|||||||||||++| |+..+- .+...|+|
T Consensus 2 l~~~~l~~~~~~~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~ 80 (236)
T TIGR03864 2 LEVAGLSFAYGARRALDDVSFTVRPG-EFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVF 80 (236)
T ss_pred EEEEeeEEEECCEEEEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEeC
Confidence 568899999987665 999999999 99999999999999999999 555321 01234666
Q ss_pred CCCCC--CchH---------------------HHHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEEEEcCCC
Q 004609 386 AKNHP--RLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIG 441 (742)
Q Consensus 386 a~~~~--~i~~---------------------~d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLDEp~ 441 (742)
+.... ..++ +..++..+|+.+.+++.+++|||||+ |++++++++.+|+++||||||
T Consensus 81 q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~ 160 (236)
T TIGR03864 81 QQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPT 160 (236)
T ss_pred CCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 65321 1111 12345667777778899999999999 899999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcccccceecceEEEe
Q 004609 442 SGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 442 ~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~l~~~a~~~~~i~~g~~~~~ 494 (742)
+|||+.....+...+.+...+.|.++|++||+.+....|++++.+.+|.+...
T Consensus 161 ~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~ 213 (236)
T TIGR03864 161 VGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLAD 213 (236)
T ss_pred cCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEe
Confidence 99999999999995554333458899999999985556999999999988654
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.4e-26 Score=234.93 Aligned_cols=166 Identities=18% Similarity=0.208 Sum_probs=132.6
Q ss_pred EEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh-----------------hhhceeecC
Q 004609 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------SKAGLYLPA 386 (742)
Q Consensus 327 l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m-----------------aq~G~~vPa 386 (742)
+.++||++.|++..+ ++||++.+| ++++|+||||||||||||+| |+..+- .+...|+|+
T Consensus 3 l~~~~l~~~~~~~~il~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q 81 (239)
T cd03296 3 IEVRNVSKRFGDFVALDDVSLDIPSG-ELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQ 81 (239)
T ss_pred EEEEeEEEEECCEEeeeeeeEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEec
Confidence 678999999987665 999999999 99999999999999999999 665321 011235665
Q ss_pred CCCC--CchH-------------------------HHHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEEEEc
Q 004609 387 KNHP--RLPW-------------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLID 438 (742)
Q Consensus 387 ~~~~--~i~~-------------------------~d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLD 438 (742)
.... .+++ ++.++..+|+....++.+++||+||+ |++++++++.+|+++|||
T Consensus 82 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllD 161 (239)
T cd03296 82 HYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLD 161 (239)
T ss_pred CCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 5311 1111 12345666777778889999999999 899999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 439 EIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 439 Ep~~glDp~~~~aL~~all~~l~~-~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
|||+|||+.....+...+ ..+.+ .|.|+|++||+.+ +..+|++++.+.+|.+...
T Consensus 162 EP~~~LD~~~~~~l~~~l-~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~ 218 (239)
T cd03296 162 EPFGALDAKVRKELRRWL-RRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQV 218 (239)
T ss_pred CCcccCCHHHHHHHHHHH-HHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEe
Confidence 999999999999999844 45554 4789999999987 5678999999999988654
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.2e-26 Score=237.21 Aligned_cols=167 Identities=16% Similarity=0.181 Sum_probs=131.5
Q ss_pred EEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhhh--------------hhceeecCCCC
Q 004609 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS--------------KAGLYLPAKNH 389 (742)
Q Consensus 327 l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~ma--------------q~G~~vPa~~~ 389 (742)
++++|+++.|++..+ ++||++.+| ++++|+||||||||||||+| |++.+-. ....|+|+...
T Consensus 2 l~~~~l~~~~~~~~il~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~ 80 (255)
T PRK11248 2 LQISHLYADYGGKPALEDINLTLESG-ELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQNEG 80 (255)
T ss_pred EEEEEEEEEeCCeeeEeeeeEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCCCc
Confidence 578999999987655 999999999 99999999999999999999 6653210 01235565531
Q ss_pred C--CchH---------------------HHHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCC
Q 004609 390 P--RLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTD 445 (742)
Q Consensus 390 ~--~i~~---------------------~d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLDEp~~glD 445 (742)
. ..++ +..++..+|+....++.+++|||||+ |+.++++++.+|+++||||||+|||
T Consensus 81 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD 160 (255)
T PRK11248 81 LLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALD 160 (255)
T ss_pred cCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCC
Confidence 1 1111 22346667777778899999999999 8999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhccccccee--cceEEEe
Q 004609 446 PSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFE--NAATEFS 494 (742)
Q Consensus 446 p~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~--~g~~~~~ 494 (742)
+.....+...+.+...+.|.++|++||+.+ +..+|++++.+. +|.+...
T Consensus 161 ~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~ 212 (255)
T PRK11248 161 AFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVER 212 (255)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEE
Confidence 999999999554433445889999999987 567899999998 4777543
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.7e-26 Score=231.13 Aligned_cols=161 Identities=22% Similarity=0.255 Sum_probs=128.4
Q ss_pred EEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh---------------------hhhcee
Q 004609 328 TVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM---------------------SKAGLY 383 (742)
Q Consensus 328 ~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m---------------------aq~G~~ 383 (742)
.++|+++.|++..+ ++||++.+| ++++|+||||||||||||+| |+..+- .+...|
T Consensus 2 ~~~~l~~~~~~~~~l~~~s~~i~~G-~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~ 80 (213)
T cd03262 2 EIKNLHKSFGDFHVLKGIDLTVKKG-EVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGM 80 (213)
T ss_pred EEEEEEEEECCeEeecCceEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceE
Confidence 57899999987665 999999999 99999999999999999999 655320 122346
Q ss_pred ecCCCCC--CchHH----------------------HHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEEEEc
Q 004609 384 LPAKNHP--RLPWF----------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLID 438 (742)
Q Consensus 384 vPa~~~~--~i~~~----------------------d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLD 438 (742)
+|+.... .+++. ..++..+|+...+++.+.+|||||+ |++++++++.+|+++|||
T Consensus 81 ~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllD 160 (213)
T cd03262 81 VFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFD 160 (213)
T ss_pred EecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 6665321 11221 2345566777778899999999999 899999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecce
Q 004609 439 EIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAA 490 (742)
Q Consensus 439 Ep~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~ 490 (742)
|||+|||+.....+.. ++..+.+.+.++|++||+.+ +..+|+++..+.+|.
T Consensus 161 EP~~~LD~~~~~~l~~-~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~ 212 (213)
T cd03262 161 EPTSALDPELVGEVLD-VMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGR 212 (213)
T ss_pred CCccCCCHHHHHHHHH-HHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCc
Confidence 9999999999999998 45555556889999999987 557899998888764
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.2e-26 Score=234.08 Aligned_cols=168 Identities=20% Similarity=0.229 Sum_probs=135.5
Q ss_pred cEEEeeeeeecCCc-ee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh--------------------hhhc
Q 004609 326 EMTVGSLSKGISDF-PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------SKAG 381 (742)
Q Consensus 326 ~l~~~nl~~~y~~~-~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m--------------------aq~G 381 (742)
.+.++|+++.|++. .+ ++|+++.+| ++++|+||||||||||++++ |++.+- .+.-
T Consensus 3 ~i~~~~l~~~y~~~~~~l~~v~~~i~~G-e~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~v 81 (235)
T COG1122 3 MIEAENLSFRYPGRKAALKDVSLEIEKG-ERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKV 81 (235)
T ss_pred eEEEEEEEEEcCCCceeeeeeEEEECCC-CEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcce
Confidence 35789999999764 44 999999999 99999999999999999999 444321 1112
Q ss_pred eeecCCCCCCc---hH---------------------HHHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEEE
Q 004609 382 LYLPAKNHPRL---PW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVL 436 (742)
Q Consensus 382 ~~vPa~~~~~i---~~---------------------~d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlL 436 (742)
.+|++.+...+ ++ ++.++..+|..+..++.+.+|||||+ |+++|..++.+|.++|
T Consensus 82 G~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~ili 161 (235)
T COG1122 82 GLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILL 161 (235)
T ss_pred EEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEEE
Confidence 23333331111 01 34567788999999999999999999 9999999999999999
Q ss_pred EcCCCCCCCHHHHHHHHHHHHHHHhcC-CcEEEEEecChh-hhhhcccccceecceEEEec
Q 004609 437 IDEIGSGTDPSEGVALATSILQYLRDR-VGLAVVTTHYAD-LSCLKDKDTRFENAATEFSL 495 (742)
Q Consensus 437 LDEp~~glDp~~~~aL~~all~~l~~~-~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~~ 495 (742)
|||||+||||..+..+.. ++..+... |.|+|++|||++ +..+|++.+.+.+|.+.++.
T Consensus 162 LDEPta~LD~~~~~~l~~-~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g 221 (235)
T COG1122 162 LDEPTAGLDPKGRRELLE-LLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADG 221 (235)
T ss_pred EcCCCCCCCHHHHHHHHH-HHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecC
Confidence 999999999999999998 66666665 679999999988 66789999999999986653
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-25 Score=230.92 Aligned_cols=163 Identities=21% Similarity=0.259 Sum_probs=129.0
Q ss_pred EEEeeeeeecCC----cee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhh-----------h-----------
Q 004609 327 MTVGSLSKGISD----FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-----------M----------- 377 (742)
Q Consensus 327 l~~~nl~~~y~~----~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~-----------m----------- 377 (742)
+.++||++.|++ ..+ ++||++.+| ++++|+||||||||||||+| |+..+ +
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G-~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKG-EIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKL 80 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHH
Confidence 578899999964 234 999999999 99999999999999999999 55431 0
Q ss_pred h-hhceeecCCCCC--CchH---------------------HHHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCC
Q 004609 378 S-KAGLYLPAKNHP--RLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRE 432 (742)
Q Consensus 378 a-q~G~~vPa~~~~--~i~~---------------------~d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~ 432 (742)
. +...|+|+.... .+++ +..++..+|+.+.+++.+++|||||+ |++++++++.+|
T Consensus 81 ~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p 160 (221)
T TIGR02211 81 RNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQP 160 (221)
T ss_pred HHhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCC
Confidence 0 223466765421 1122 22345666777778899999999999 899999999999
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHHHHHHHh-cCCcEEEEEecChhhhhhcccccceecceE
Q 004609 433 SLVLIDEIGSGTDPSEGVALATSILQYLR-DRVGLAVVTTHYADLSCLKDKDTRFENAAT 491 (742)
Q Consensus 433 ~LlLLDEp~~glDp~~~~aL~~all~~l~-~~~~~vlitTH~~~l~~~a~~~~~i~~g~~ 491 (742)
+++||||||+|||+.....+...+. .+. +.+.++|++||+.+....+++++.+.+|.+
T Consensus 161 ~illlDEPt~~LD~~~~~~l~~~l~-~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i 219 (221)
T TIGR02211 161 SLVLADEPTGNLDNNNAKIIFDLML-ELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQL 219 (221)
T ss_pred CEEEEeCCCCcCCHHHHHHHHHHHH-HHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEe
Confidence 9999999999999999999998554 454 457899999999886666888888888865
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-25 Score=231.43 Aligned_cols=164 Identities=13% Similarity=0.139 Sum_probs=130.7
Q ss_pred EEEeeeeeec-CCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhh----------------------hhhh
Q 004609 327 MTVGSLSKGI-SDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL----------------------MSKA 380 (742)
Q Consensus 327 l~~~nl~~~y-~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~----------------------maq~ 380 (742)
+.++|+++.| ++..+ ++||++.+| ++++|+||||||||||||+| |+..+ ..+.
T Consensus 2 l~~~~l~~~~~~~~~~l~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 80 (222)
T PRK10908 2 IRFEHVSKAYLGGRQALQGVTFHMRPG-EMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQ 80 (222)
T ss_pred EEEEeeEEEecCCCeEEeeeeEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhh
Confidence 5688999999 55554 999999999 99999999999999999999 55432 0112
Q ss_pred ceeecCCCCC--CchH---------------------HHHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEEE
Q 004609 381 GLYLPAKNHP--RLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVL 436 (742)
Q Consensus 381 G~~vPa~~~~--~i~~---------------------~d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlL 436 (742)
..|+|+.... .+++ ++.++..+|+.+.+++.+++||+||+ |++++++++.+|+++|
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 160 (222)
T PRK10908 81 IGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLL 160 (222)
T ss_pred eEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 3466665421 1111 12345667777778899999999999 8999999999999999
Q ss_pred EcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEE
Q 004609 437 IDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATE 492 (742)
Q Consensus 437 LDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~ 492 (742)
|||||+|||+.....+... +..+.+.+.++|++||+.+ +..+|++++.+.+|.+.
T Consensus 161 lDEPt~~LD~~~~~~l~~~-l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 216 (222)
T PRK10908 161 ADEPTGNLDDALSEGILRL-FEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLH 216 (222)
T ss_pred EeCCCCcCCHHHHHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEc
Confidence 9999999999999999984 4455556889999999987 55789999999988763
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=1e-25 Score=250.31 Aligned_cols=167 Identities=22% Similarity=0.275 Sum_probs=137.2
Q ss_pred cEEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhh-------------------hhhhcee
Q 004609 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKAGLY 383 (742)
Q Consensus 326 ~l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~-------------------maq~G~~ 383 (742)
.+.++||+++|+++.+ ++||++.+| ++++|+||||||||||||+| |++.+ +++...+
T Consensus 3 ~L~~~nls~~y~~~~vL~~vs~~i~~G-eiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~ 81 (402)
T PRK09536 3 MIDVSDLSVEFGDTTVLDGVDLSVREG-SLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVAS 81 (402)
T ss_pred eEEEeeEEEEECCEEEEEeeEEEECCC-CEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEE
Confidence 3678999999988766 999999999 99999999999999999999 66532 1122346
Q ss_pred ecCCCCC--CchH-------------------------HHHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEE
Q 004609 384 LPAKNHP--RLPW-------------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLV 435 (742)
Q Consensus 384 vPa~~~~--~i~~-------------------------~d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~Ll 435 (742)
+|+.... .+++ ++.++..+|+.+..++++++|||||+ |+.++++++++|+++
T Consensus 82 v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~iL 161 (402)
T PRK09536 82 VPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVL 161 (402)
T ss_pred EccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 6665421 1111 23456677888888999999999999 899999999999999
Q ss_pred EEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChhh-hhhcccccceecceEEEe
Q 004609 436 LIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL-SCLKDKDTRFENAATEFS 494 (742)
Q Consensus 436 LLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~l-~~~a~~~~~i~~g~~~~~ 494 (742)
||||||+|||+.....+.. ++..+.+.+.|+|++||++++ ..+|++++.+.+|++..+
T Consensus 162 LLDEPtsgLD~~~~~~l~~-lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~ 220 (402)
T PRK09536 162 LLDEPTASLDINHQVRTLE-LVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAA 220 (402)
T ss_pred EEECCcccCCHHHHHHHHH-HHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999998 555666668899999999885 479999999999998764
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-25 Score=231.05 Aligned_cols=166 Identities=22% Similarity=0.254 Sum_probs=130.5
Q ss_pred EEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh--------------------hhhcee
Q 004609 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------SKAGLY 383 (742)
Q Consensus 327 l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m--------------------aq~G~~ 383 (742)
++++|+++.|++..+ ++||++.+| ++++|+|||||||||||+++ |++.+- .+...|
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (222)
T cd03224 1 LEVENLNAGYGKSQILFGVSLTVPEG-EIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGY 79 (222)
T ss_pred CEEeeEEeecCCeeEeeeeeEEEcCC-eEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEE
Confidence 357899999987655 999999999 99999999999999999999 555320 111346
Q ss_pred ecCCCCC--CchHHH-------------------HHHHHc-CCccccccccccchHHHH-HHHHHHHhcCCCcEEEEcCC
Q 004609 384 LPAKNHP--RLPWFD-------------------LILADI-GDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEI 440 (742)
Q Consensus 384 vPa~~~~--~i~~~d-------------------~il~~i-g~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLDEp 440 (742)
+|+.... .+++.+ .++..+ +..+..++.+++|||||+ |++++++++.+|+++|||||
T Consensus 80 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 159 (222)
T cd03224 80 VPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEP 159 (222)
T ss_pred eccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCC
Confidence 6665411 112211 234444 355667888999999999 89999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 441 GSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 441 ~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
|+|||+.....+...+ ..+.+.+.|+|++||+.+ +..+|++++.+.+|.+...
T Consensus 160 t~~LD~~~~~~l~~~l-~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~ 213 (222)
T cd03224 160 SEGLAPKIVEEIFEAI-RELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLE 213 (222)
T ss_pred cccCCHHHHHHHHHHH-HHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEe
Confidence 9999999999999855 455556889999999988 5789999999999987643
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.9e-25 Score=231.48 Aligned_cols=165 Identities=21% Similarity=0.229 Sum_probs=132.1
Q ss_pred EEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh--------------------hhhceee
Q 004609 328 TVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------SKAGLYL 384 (742)
Q Consensus 328 ~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m--------------------aq~G~~v 384 (742)
.++|+++.|++..+ ++||++.+| ++++|+||||||||||||+| |++.+- .....|+
T Consensus 2 ~~~~l~~~~~~~~~l~~vsl~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v 80 (236)
T cd03219 2 EVRGLTKRFGGLVALDDVSFSVRPG-EIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRT 80 (236)
T ss_pred eeeeeEEEECCEEEecCceEEecCC-cEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEE
Confidence 57899999987655 999999999 99999999999999999999 665321 1112466
Q ss_pred cCCCCC--CchH-------------------------------HHHHHHHcCCccccccccccchHHHH-HHHHHHHhcC
Q 004609 385 PAKNHP--RLPW-------------------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVS 430 (742)
Q Consensus 385 Pa~~~~--~i~~-------------------------------~d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~ 430 (742)
|+.... .+++ +..++..+|+....++.+++|||||+ |++++++++.
T Consensus 81 ~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~ 160 (236)
T cd03219 81 FQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALAT 160 (236)
T ss_pred ecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHhc
Confidence 665310 1111 22345567777778899999999999 8999999999
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 431 RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 431 ~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
+|+++||||||+|||+.....+...+ ..+.+.+.|+|++||+.+ +..+|+++..+.+|.+...
T Consensus 161 ~p~llllDEPt~~LD~~~~~~l~~~l-~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~ 224 (236)
T cd03219 161 DPKLLLLDEPAAGLNPEETEELAELI-RELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAE 224 (236)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHH-HHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEee
Confidence 99999999999999999999999844 455556889999999987 4578999999999988654
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-25 Score=237.30 Aligned_cols=168 Identities=19% Similarity=0.172 Sum_probs=134.1
Q ss_pred cEEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh----------------------hhh
Q 004609 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM----------------------SKA 380 (742)
Q Consensus 326 ~l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m----------------------aq~ 380 (742)
.++++||++.|+++.+ ++||++.+| ++++|+||||||||||||+| |++.+- .+.
T Consensus 7 ~l~~~~l~~~~~~~~il~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~ 85 (269)
T PRK11831 7 LVDMRGVSFTRGNRCIFDNISLTVPRG-KITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKR 85 (269)
T ss_pred eEEEeCeEEEECCEEEEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhc
Confidence 5789999999987665 999999999 99999999999999999999 665320 112
Q ss_pred ceeecCCCCC--CchHHH----------------------HHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEE
Q 004609 381 GLYLPAKNHP--RLPWFD----------------------LILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLV 435 (742)
Q Consensus 381 G~~vPa~~~~--~i~~~d----------------------~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~Ll 435 (742)
..|+|+.... .+++.+ .++..+|+.+..++.+++|||||+ |+.++++++.+|+++
T Consensus 86 i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~ll 165 (269)
T PRK11831 86 MSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLI 165 (269)
T ss_pred EEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 3466665421 112222 235566777778889999999999 899999999999999
Q ss_pred EEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 436 LIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 436 LLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
||||||+|||+.....+...+.+...+.|.++|++||+.+ +..+|++++.+.+|.+...
T Consensus 166 lLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~ 225 (269)
T PRK11831 166 MFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAH 225 (269)
T ss_pred EEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEe
Confidence 9999999999999999998555433344789999999976 6678999999999988754
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.3e-26 Score=230.60 Aligned_cols=161 Identities=15% Similarity=0.169 Sum_probs=127.1
Q ss_pred EEeeeeeecCC-cee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhh----------------------hhhhc
Q 004609 328 TVGSLSKGISD-FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL----------------------MSKAG 381 (742)
Q Consensus 328 ~~~nl~~~y~~-~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~----------------------maq~G 381 (742)
.++|+++.|++ +.+ ++||++.+| ++++|+|||||||||||++| |+..+ ..+..
T Consensus 2 ~~~~l~~~~~~~~~~l~~~sl~i~~G-~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i 80 (214)
T cd03292 2 EFINVTKTYPNGTAALDGINISISAG-EFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKI 80 (214)
T ss_pred EEEEEEEEeCCCceeeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHhe
Confidence 57899999964 344 999999999 99999999999999999999 55432 01123
Q ss_pred eeecCCCCC--CchH---------------------HHHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEEEE
Q 004609 382 LYLPAKNHP--RLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLI 437 (742)
Q Consensus 382 ~~vPa~~~~--~i~~---------------------~d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLL 437 (742)
.|+|+.... .+++ +..++..+|+.+..++.+.+|||||+ |+.++++++.+|+++||
T Consensus 81 ~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llll 160 (214)
T cd03292 81 GVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIA 160 (214)
T ss_pred EEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEE
Confidence 466665311 1111 12345666777778889999999999 89999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecce
Q 004609 438 DEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAA 490 (742)
Q Consensus 438 DEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~ 490 (742)
||||+|||+.....+...+. .+.+.+.|+|++||+.+ +..+|+++..+.+|.
T Consensus 161 DEPt~~LD~~~~~~~~~~l~-~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~ 213 (214)
T cd03292 161 DEPTGNLDPDTTWEIMNLLK-KINKAGTTVVVATHAKELVDTTRHRVIALERGK 213 (214)
T ss_pred eCCCCcCCHHHHHHHHHHHH-HHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCc
Confidence 99999999999999998554 45556889999999987 456899988888775
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.9e-26 Score=229.00 Aligned_cols=158 Identities=23% Similarity=0.346 Sum_probs=135.5
Q ss_pred EEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhHHhhhhhhhhceeecCCCC---------------
Q 004609 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNH--------------- 389 (742)
Q Consensus 327 l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~lGli~~maq~G~~vPa~~~--------------- 389 (742)
+.+++|++.||+-.+ ++||++.+| ++++|+||||+||||++++| +|+|.|..|.
T Consensus 5 L~v~~l~k~FGGl~Al~~Vsl~v~~G-ei~~LIGPNGAGKTTlfNli--------tG~~~P~~G~v~~~G~~it~l~p~~ 75 (250)
T COG0411 5 LEVRGLSKRFGGLTAVNDVSLEVRPG-EIVGLIGPNGAGKTTLFNLI--------TGFYKPSSGTVIFRGRDITGLPPHR 75 (250)
T ss_pred eeeccceeecCCEEEEeceeEEEcCC-eEEEEECCCCCCceeeeeee--------cccccCCCceEEECCcccCCCCHHH
Confidence 568899999998655 999999999 99999999999999999999 8888887762
Q ss_pred ----------------CCchHHHH---------------------------------HHHHcCCccccccccccchHHHH
Q 004609 390 ----------------PRLPWFDL---------------------------------ILADIGDHQSLEQNLSTFSGHIS 420 (742)
Q Consensus 390 ----------------~~i~~~d~---------------------------------il~~ig~~~~~~~~lstfSgg~k 420 (742)
..++++++ ++..+|+.+..+...++||+|++
T Consensus 76 iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~q 155 (250)
T COG0411 76 IARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQ 155 (250)
T ss_pred HHhccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHh
Confidence 12223333 34557888889999999999988
Q ss_pred -HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 421 -RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 421 -rl~~~~~l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~-~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
++-++++++++|.|||||||.+|++|.+...+.. ++..+++ .|.|++++.||+. +..+||++.++..|.+.++
T Consensus 156 R~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~-~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAe 231 (250)
T COG0411 156 RRLEIARALATQPKLLLLDEPAAGLNPEETEELAE-LIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAE 231 (250)
T ss_pred HHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHH-HHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCccc
Confidence 7888899999999999999999999999999998 6666776 4689999999999 5679999999999987665
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-25 Score=232.87 Aligned_cols=166 Identities=21% Similarity=0.252 Sum_probs=133.3
Q ss_pred EEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh---------------------hhhce
Q 004609 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM---------------------SKAGL 382 (742)
Q Consensus 327 l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m---------------------aq~G~ 382 (742)
+.++|+++.|++..+ ++||++.+| ++++|+||||+||||||++| |++.+- .+...
T Consensus 2 l~~~~l~~~~~~~~il~~~s~~i~~G-e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 80 (240)
T PRK09493 2 IEFKNVSKHFGPTQVLHNIDLNIDQG-EVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAG 80 (240)
T ss_pred EEEEeEEEEECCeEEeeeeeEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceE
Confidence 568899999987655 999999999 99999999999999999999 665320 11224
Q ss_pred eecCCCCC--CchH----------------------HHHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEEEE
Q 004609 383 YLPAKNHP--RLPW----------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLI 437 (742)
Q Consensus 383 ~vPa~~~~--~i~~----------------------~d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLL 437 (742)
|+|+.... .+++ +..++..+|+...+++.++.||+||+ |+.++++++.+|+++||
T Consensus 81 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llll 160 (240)
T PRK09493 81 MVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLF 160 (240)
T ss_pred EEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEE
Confidence 56655311 1111 12345667777778899999999999 89999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChhh-hhhcccccceecceEEEe
Q 004609 438 DEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL-SCLKDKDTRFENAATEFS 494 (742)
Q Consensus 438 DEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~l-~~~a~~~~~i~~g~~~~~ 494 (742)
||||+|+|+.....+.. ++..+.+.+.++|++||+.+. ..+|++++.+.+|.+...
T Consensus 161 DEP~~~LD~~~~~~l~~-~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~ 217 (240)
T PRK09493 161 DEPTSALDPELRHEVLK-VMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAED 217 (240)
T ss_pred cCCcccCCHHHHHHHHH-HHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEee
Confidence 99999999999999998 455566668899999999884 578999999999988754
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-25 Score=237.61 Aligned_cols=166 Identities=17% Similarity=0.194 Sum_probs=133.0
Q ss_pred EEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh---------------------hhhce
Q 004609 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM---------------------SKAGL 382 (742)
Q Consensus 327 l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m---------------------aq~G~ 382 (742)
++++||+++|+++.+ ++||++.+| ++++|+||||||||||||+| |++.+- .+...
T Consensus 2 l~~~~l~~~~~~~~il~~isl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~ 80 (271)
T PRK13638 2 LATSDLWFRYQDEPVLKGLNLDFSLS-PVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVA 80 (271)
T ss_pred eEEEEEEEEcCCcccccceEEEEcCC-CEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheE
Confidence 578999999987655 999999999 99999999999999999999 655320 11234
Q ss_pred eecCCCCC---CchH---------------------HHHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEEEE
Q 004609 383 YLPAKNHP---RLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLI 437 (742)
Q Consensus 383 ~vPa~~~~---~i~~---------------------~d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLL 437 (742)
|+|+.... ...+ ++.++..+|+.+..++.+++|||||+ |+.++++++.+|+++||
T Consensus 81 ~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~lllL 160 (271)
T PRK13638 81 TVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLL 160 (271)
T ss_pred EEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 66765310 0011 12345566777777889999999999 89999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 438 DEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 438 DEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
||||+|||+.....+.. ++..+.+.|.++|++||+.+ +..+|+++..+.+|.+..+
T Consensus 161 DEPt~~LD~~~~~~l~~-~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~ 217 (271)
T PRK13638 161 DEPTAGLDPAGRTQMIA-IIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTH 217 (271)
T ss_pred eCCcccCCHHHHHHHHH-HHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999998 44455556889999999988 4578999999999998755
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.7e-25 Score=231.34 Aligned_cols=167 Identities=19% Similarity=0.236 Sum_probs=132.0
Q ss_pred EEEeeeeeecC-Ccee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhh----------------------hhhh
Q 004609 327 MTVGSLSKGIS-DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL----------------------MSKA 380 (742)
Q Consensus 327 l~~~nl~~~y~-~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~----------------------maq~ 380 (742)
+.++||++.|+ +..+ ++||++.+| ++++|+||||||||||||+| |+..+ +.+.
T Consensus 2 l~~~~l~~~~~~~~~il~~vs~~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (243)
T TIGR02315 2 LEVENLSKVYPNGKQALKNINLNINPG-EFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRR 80 (243)
T ss_pred eEEEeeeeecCCCcceeecceEEEcCC-CEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhh
Confidence 56889999997 6555 999999999 99999999999999999999 55532 0122
Q ss_pred ceeecCCCCC--CchHH-----------------------------HHHHHHcCCccccccccccchHHHH-HHHHHHHh
Q 004609 381 GLYLPAKNHP--RLPWF-----------------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILEL 428 (742)
Q Consensus 381 G~~vPa~~~~--~i~~~-----------------------------d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l 428 (742)
..|+|+.... .+++. ..++..+|+...+++.+++|||||+ |+++++++
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al 160 (243)
T TIGR02315 81 IGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARAL 160 (243)
T ss_pred eEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHH
Confidence 3466665311 11111 2345566777778899999999999 89999999
Q ss_pred cCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChhh-hhhcccccceecceEEEe
Q 004609 429 VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL-SCLKDKDTRFENAATEFS 494 (742)
Q Consensus 429 ~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~l-~~~a~~~~~i~~g~~~~~ 494 (742)
+.+|+++||||||+|||+.....+...+.+...+.+.++|++||+.+. ..+|+++..+.+|.+...
T Consensus 161 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~ 227 (243)
T TIGR02315 161 AQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFD 227 (243)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEec
Confidence 999999999999999999999999985444334457899999999884 578999999999987643
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-25 Score=229.59 Aligned_cols=165 Identities=23% Similarity=0.321 Sum_probs=130.9
Q ss_pred EEEeeeeeecCC--cee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh------------------hhhcee
Q 004609 327 MTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------SKAGLY 383 (742)
Q Consensus 327 l~~~nl~~~y~~--~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m------------------aq~G~~ 383 (742)
+.++|+++.|++ .++ ++||++.+| ++++|+||||||||||||+| |+..+- .+...|
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 79 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKG-EIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGY 79 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEE
Confidence 357899999976 555 999999999 99999999999999999999 555321 111235
Q ss_pred ecCCCCC--CchH---------------------HHHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEEEEcC
Q 004609 384 LPAKNHP--RLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDE 439 (742)
Q Consensus 384 vPa~~~~--~i~~---------------------~d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLDE 439 (742)
+|+.... ..++ ++.++..+|+.+..++.+++||+||+ |++++++++.+|+++||||
T Consensus 80 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDE 159 (220)
T cd03263 80 CPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDE 159 (220)
T ss_pred ecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECC
Confidence 5654311 1111 22345667777778899999999999 8999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 440 IGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 440 p~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
||+|+|+.....+.. ++..+.+ +.|+|++||+.+ +..+|+++..+.+|.+...
T Consensus 160 P~~~LD~~~~~~l~~-~l~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~ 213 (220)
T cd03263 160 PTSGLDPASRRAIWD-LILEVRK-GRSIILTTHSMDEAEALCDRIAIMSDGKLRCI 213 (220)
T ss_pred CCCCCCHHHHHHHHH-HHHHHhc-CCEEEEEcCCHHHHHHhcCEEEEEECCEEEec
Confidence 999999999999998 4445555 589999999988 4568999999999988654
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.4e-25 Score=230.20 Aligned_cols=165 Identities=19% Similarity=0.247 Sum_probs=130.9
Q ss_pred EEeeeeeecCC-cee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh----------------------hhhc
Q 004609 328 TVGSLSKGISD-FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM----------------------SKAG 381 (742)
Q Consensus 328 ~~~nl~~~y~~-~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m----------------------aq~G 381 (742)
+++||++.|++ +.+ ++||++.+| ++++|+||||||||||||+| |++.+- .+..
T Consensus 2 ~~~~l~~~~~~~~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 80 (241)
T cd03256 2 EVENLSKTYPNGKKALKDVSLSINPG-EFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQI 80 (241)
T ss_pred EEeeEEEecCCccEEEecceEEEcCC-CEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhcc
Confidence 57899999976 555 999999999 99999999999999999999 655320 1123
Q ss_pred eeecCCCCC--CchHH-----------------------------HHHHHHcCCccccccccccchHHHH-HHHHHHHhc
Q 004609 382 LYLPAKNHP--RLPWF-----------------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELV 429 (742)
Q Consensus 382 ~~vPa~~~~--~i~~~-----------------------------d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~ 429 (742)
.|+|+.... .+++. ..++..+|+....++.+.+|||||+ |++++++++
T Consensus 81 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~ 160 (241)
T cd03256 81 GMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALM 160 (241)
T ss_pred EEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHHh
Confidence 466665311 11111 2235566777777889999999999 899999999
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHh-cCCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 430 SRESLVLIDEIGSGTDPSEGVALATSILQYLR-DRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 430 ~~~~LlLLDEp~~glDp~~~~aL~~all~~l~-~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
.+|+++||||||+|||+.....+...+. .+. +.|.++|++||+.+ +..+|+++..+.+|.+...
T Consensus 161 ~~p~llllDEPt~~LD~~~~~~l~~~l~-~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~ 226 (241)
T cd03256 161 QQPKLILADEPVASLDPASSRQVMDLLK-RINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFD 226 (241)
T ss_pred cCCCEEEEeCccccCCHHHHHHHHHHHH-HHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEee
Confidence 9999999999999999999999998444 454 45889999999987 4559999999999988654
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.7e-25 Score=244.82 Aligned_cols=167 Identities=16% Similarity=0.175 Sum_probs=133.6
Q ss_pred EEEeeeeeecC----Ccee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh----------------------
Q 004609 327 MTVGSLSKGIS----DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM---------------------- 377 (742)
Q Consensus 327 l~~~nl~~~y~----~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m---------------------- 377 (742)
++++||+++|+ +..+ ++||++.+| ++++|+||||||||||||+| |++.+-
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~G-ei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 80 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAG-EIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKA 80 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCC-CEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 57899999997 2344 999999999 99999999999999999999 665320
Q ss_pred hhhceeecCCCCC--CchHH---------------------HHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCc
Q 004609 378 SKAGLYLPAKNHP--RLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRES 433 (742)
Q Consensus 378 aq~G~~vPa~~~~--~i~~~---------------------d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~ 433 (742)
.+...|+|+.... .+++. ..++..+|+.+..++.+++|||||+ |+.++++++.+|+
T Consensus 81 ~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~ 160 (343)
T PRK11153 81 RRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPK 160 (343)
T ss_pred hcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 1223466765421 12222 2345667888888999999999999 8999999999999
Q ss_pred EEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 434 LVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 434 LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
+|||||||+|||+.....+...+.+...+.|.|+|++||+++ +..+|+++..+.+|.+..+
T Consensus 161 iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~ 222 (343)
T PRK11153 161 VLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQ 222 (343)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 999999999999999999998554433445889999999987 5678999999999988654
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-25 Score=242.04 Aligned_cols=158 Identities=22% Similarity=0.290 Sum_probs=127.1
Q ss_pred ecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh------------------hhhceeecCCCCC--C
Q 004609 335 GISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------SKAGLYLPAKNHP--R 391 (742)
Q Consensus 335 ~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m------------------aq~G~~vPa~~~~--~ 391 (742)
.|++..+ ++||++.+| ++++|+||||||||||||+| |++.+- .+...|+|+.... .
T Consensus 2 ~y~~~~~l~~vs~~i~~G-e~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~ 80 (302)
T TIGR01188 2 VYGDFKAVDGVNFKVREG-EVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDED 80 (302)
T ss_pred eeCCeeEEeeeeEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCC
Confidence 4555444 999999999 99999999999999999999 665321 1123466665421 1
Q ss_pred chH---------------------HHHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHH
Q 004609 392 LPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEG 449 (742)
Q Consensus 392 i~~---------------------~d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLDEp~~glDp~~~ 449 (742)
+++ ++.++..+|+.+..++.+++|||||+ |+.++++++.+|++|||||||+||||...
T Consensus 81 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~ 160 (302)
T TIGR01188 81 LTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTR 160 (302)
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHH
Confidence 111 23456777888888999999999999 89999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 450 VALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 450 ~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
..+.. ++..+.+.|.|+|++||+++ +..+|+++..+.+|.+...
T Consensus 161 ~~l~~-~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~ 205 (302)
T TIGR01188 161 RAIWD-YIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAE 205 (302)
T ss_pred HHHHH-HHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEE
Confidence 99998 45556666899999999987 5679999999999998765
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.2e-25 Score=230.81 Aligned_cols=167 Identities=19% Similarity=0.263 Sum_probs=133.8
Q ss_pred EEEeeeeeecCCceecccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh-----------------hhhceeecCCC
Q 004609 327 MTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------SKAGLYLPAKN 388 (742)
Q Consensus 327 l~~~nl~~~y~~~~v~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m-----------------aq~G~~vPa~~ 388 (742)
+.++||+++|++...++||++.+| ++++|+||||||||||||+| |+..+. .....|+|+..
T Consensus 2 l~~~~l~~~~~~~~~~is~~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~ 80 (232)
T PRK10771 2 LKLTDITWLYHHLPMRFDLTVERG-ERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQEN 80 (232)
T ss_pred eEEEEEEEEECCccceeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEeccc
Confidence 578999999987666999999999 99999999999999999999 655321 01124566553
Q ss_pred CC--CchH---------------------HHHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCC
Q 004609 389 HP--RLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGT 444 (742)
Q Consensus 389 ~~--~i~~---------------------~d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLDEp~~gl 444 (742)
.. .+++ +..++..+|+...+++.+.+|||||+ |+.++++++.+|+++||||||+||
T Consensus 81 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gL 160 (232)
T PRK10771 81 NLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSAL 160 (232)
T ss_pred ccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 11 1111 22345667777788999999999999 899999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 445 DPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 445 Dp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
|+.....+...+.+...+.+.|+|++||+.+ +..++++++.+.+|.+...
T Consensus 161 D~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~ 211 (232)
T PRK10771 161 DPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWD 211 (232)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999555444445889999999988 5678999999999988654
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.9e-25 Score=233.52 Aligned_cols=166 Identities=21% Similarity=0.215 Sum_probs=133.1
Q ss_pred EEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh--------------------------
Q 004609 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------------- 377 (742)
Q Consensus 327 l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m-------------------------- 377 (742)
++++||++.|++..+ ++||++.+| ++++|+||||||||||||+| |++.+-
T Consensus 4 l~~~~l~~~~~~~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 82 (250)
T PRK11264 4 IEVKNLVKKFHGQTVLHGIDLEVKPG-EVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQ 82 (250)
T ss_pred EEEeceEEEECCeeeeccceEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHH
Confidence 678999999987655 999999999 99999999999999999999 554320
Q ss_pred -hhhceeecCCCCC--CchHH----------------------HHHHHHcCCccccccccccchHHHH-HHHHHHHhcCC
Q 004609 378 -SKAGLYLPAKNHP--RLPWF----------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSR 431 (742)
Q Consensus 378 -aq~G~~vPa~~~~--~i~~~----------------------d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~ 431 (742)
.+...|+|+.... ..++. ..++..+|+....++.+++|||||+ |++++++++.+
T Consensus 83 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~~ 162 (250)
T PRK11264 83 LRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMR 162 (250)
T ss_pred hhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhcC
Confidence 1123466665311 11221 2235556777777889999999999 89999999999
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 432 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 432 ~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
|++|||||||+|||+.....+.. ++..+.+.+.++|++||+.+ +..+|++++.+.+|.+..+
T Consensus 163 p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~ 225 (250)
T PRK11264 163 PEVILFDEPTSALDPELVGEVLN-TIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQ 225 (250)
T ss_pred CCEEEEeCCCccCCHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEe
Confidence 99999999999999999999998 55556666889999999987 5578999999999988654
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-25 Score=217.38 Aligned_cols=160 Identities=21% Similarity=0.292 Sum_probs=140.2
Q ss_pred EEEeeeeeecCCceecccccccCCceEEEEEeCCCCCcchHHhhHHhhhhhhhhceeecCCCCCCc--------------
Q 004609 327 MTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRL-------------- 392 (742)
Q Consensus 327 l~~~nl~~~y~~~~v~i~l~l~~g~~~~~ItGpNGsGKSTlLK~lGli~~maq~G~~vPa~~~~~i-------------- 392 (742)
+.+.+|.+.|+..+..+|+.++.| ++++|+||+|+||||||+.| +|+..|++|...+
T Consensus 2 l~L~~V~~~y~~~~~~fdl~v~~g-e~vAi~GpSGaGKSTLLnLI--------AGF~~P~~G~i~i~g~d~t~~~P~~RP 72 (231)
T COG3840 2 LALDDVRFSYGHLPMRFDLTVPAG-EIVAILGPSGAGKSTLLNLI--------AGFETPASGEILINGVDHTASPPAERP 72 (231)
T ss_pred ccccceEEeeCcceEEEEEeecCC-cEEEEECCCCccHHHHHHHH--------HhccCCCCceEEEcCeecCcCCcccCC
Confidence 346789999998888999999999 99999999999999999999 7877787772111
Q ss_pred --------------hH---------------------HHHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEEE
Q 004609 393 --------------PW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVL 436 (742)
Q Consensus 393 --------------~~---------------------~d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlL 436 (742)
++ ++.+..++|+....++.+.+||||++ |+++++.++.+..++|
T Consensus 73 VSmlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilL 152 (231)
T COG3840 73 VSMLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILL 152 (231)
T ss_pred hhhhhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEE
Confidence 11 45678899999999999999999999 9999999999999999
Q ss_pred EcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEec
Q 004609 437 IDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFSL 495 (742)
Q Consensus 437 LDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~~ 495 (742)
||||++.|||.-+..+...+.....+++.|++|+||..+ ...++++.+.+.+|++.+..
T Consensus 153 LDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g 212 (231)
T COG3840 153 LDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQG 212 (231)
T ss_pred ecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeec
Confidence 999999999999999998666666677899999999976 78899999999999998764
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.7e-25 Score=241.62 Aligned_cols=159 Identities=21% Similarity=0.296 Sum_probs=137.5
Q ss_pred CcEEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhHHhhhhhhhhceeecCCCC-------------
Q 004609 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNH------------- 389 (742)
Q Consensus 325 ~~l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~lGli~~maq~G~~vPa~~~------------- 389 (742)
..++++||+|.||+..+ ++|+++.+| ++++|+||+||||||+||+| +|+.-|.+|.
T Consensus 4 ~~l~i~~v~k~yg~~~av~~isl~i~~G-ef~~lLGPSGcGKTTlLR~I--------AGfe~p~~G~I~l~G~~i~~lpp 74 (352)
T COG3842 4 PALEIRNVSKSFGDFTAVDDISLDIKKG-EFVTLLGPSGCGKTTLLRMI--------AGFEQPSSGEILLDGEDITDVPP 74 (352)
T ss_pred ceEEEEeeeeecCCeeEEecceeeecCC-cEEEEECCCCCCHHHHHHHH--------hCCCCCCCceEEECCEECCCCCh
Confidence 35789999999997655 899999999 99999999999999999999 5555555551
Q ss_pred ---------------CCchHHH----------------------HHHHHcCCccccccccccchHHHH-HHHHHHHhcCC
Q 004609 390 ---------------PRLPWFD----------------------LILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSR 431 (742)
Q Consensus 390 ---------------~~i~~~d----------------------~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~ 431 (742)
+.+++++ +++..+++.+...++++.|||||+ |+++|++++.+
T Consensus 75 ~kR~ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~ 154 (352)
T COG3842 75 EKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPE 154 (352)
T ss_pred hhcccceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcC
Confidence 2233333 346777888999999999999999 99999999999
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEE
Q 004609 432 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATE 492 (742)
Q Consensus 432 ~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~ 492 (742)
|.+||||||.++||..-+..+...+.+...+.|.|.|++|||.+ -..++|++..|.+|.++
T Consensus 155 P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~ 216 (352)
T COG3842 155 PKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIE 216 (352)
T ss_pred cchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCcee
Confidence 99999999999999999999999888877788999999999977 55789999999999875
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-25 Score=229.27 Aligned_cols=159 Identities=24% Similarity=0.330 Sum_probs=127.2
Q ss_pred EeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh--------------hhhceeecCCCCC-
Q 004609 329 VGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------SKAGLYLPAKNHP- 390 (742)
Q Consensus 329 ~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m--------------aq~G~~vPa~~~~- 390 (742)
++||++.|++..+ ++||++.+| ++++|+||||||||||||+| |++.+- .+...|+|+....
T Consensus 2 ~~~l~~~~~~~~~l~~isl~i~~G-e~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~~ 80 (213)
T cd03235 2 VEDLTVSYGGHPVLEDVSFEVKPG-EFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSID 80 (213)
T ss_pred cccceeEECCEEeeecceeEEcCC-CEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEeccccccc
Confidence 5789999987655 999999999 99999999999999999999 665321 1223466665321
Q ss_pred ---CchH-------------------------HHHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEEEEcCCC
Q 004609 391 ---RLPW-------------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIG 441 (742)
Q Consensus 391 ---~i~~-------------------------~d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLDEp~ 441 (742)
..++ +..++..+|+.+.+++.+++|||||+ |+.++++++.+|+++||||||
T Consensus 81 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt 160 (213)
T cd03235 81 RDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPF 160 (213)
T ss_pred cCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 1111 22345566777778899999999999 899999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecc
Q 004609 442 SGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENA 489 (742)
Q Consensus 442 ~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g 489 (742)
+|||+.....+...+.+ +.+.+.|+|++||+.+ +..+|+++..+.++
T Consensus 161 ~~LD~~~~~~l~~~l~~-~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~ 208 (213)
T cd03235 161 AGVDPKTQEDIYELLRE-LRREGMTILVVTHDLGLVLEYFDRVLLLNRT 208 (213)
T ss_pred ccCCHHHHHHHHHHHHH-HHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc
Confidence 99999999999995555 4546889999999987 56789999888775
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.4e-26 Score=222.64 Aligned_cols=150 Identities=21% Similarity=0.225 Sum_probs=120.3
Q ss_pred EEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhHHhhhhhhhhceeecCCCCCCchH--------HH
Q 004609 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPW--------FD 396 (742)
Q Consensus 327 l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~lGli~~maq~G~~vPa~~~~~i~~--------~d 396 (742)
+.++|+++.|++.++ ++||++.+| ++++|+||||+||||||++| +|...|..|...+.. .+
T Consensus 1 l~~~~l~~~~~~~~vl~~i~~~i~~G-e~~~l~G~nGsGKSTLl~~i--------~G~~~~~~G~v~~~g~~~~~~~~~~ 71 (163)
T cd03216 1 LELRGITKRFGGVKALDGVSLSVRRG-EVHALLGENGAGKSTLMKIL--------SGLYKPDSGEILVDGKEVSFASPRD 71 (163)
T ss_pred CEEEEEEEEECCeEEEeeeEEEEeCC-CEEEEECCCCCCHHHHHHHH--------hCCCCCCCeEEEECCEECCcCCHHH
Confidence 357899999987666 999999999 99999999999999999999 787777766322211 11
Q ss_pred HHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh
Q 004609 397 LILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD 475 (742)
Q Consensus 397 ~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~ 475 (742)
..-..++ .+..||+||+ |++++++++.+|+++||||||+|||+.....+...+. .+.+.+.|+|++||+.+
T Consensus 72 ~~~~~i~-------~~~qLS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~-~~~~~~~tiii~sh~~~ 143 (163)
T cd03216 72 ARRAGIA-------MVYQLSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIR-RLRAQGVAVIFISHRLD 143 (163)
T ss_pred HHhcCeE-------EEEecCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHH-HHHHCCCEEEEEeCCHH
Confidence 1111111 1223999999 8999999999999999999999999999999998544 55556889999999987
Q ss_pred -hhhhcccccceecceEEE
Q 004609 476 -LSCLKDKDTRFENAATEF 493 (742)
Q Consensus 476 -l~~~a~~~~~i~~g~~~~ 493 (742)
+..++++.+.+.+|.+.+
T Consensus 144 ~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 144 EVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred HHHHhCCEEEEEECCEEEe
Confidence 677899999999988753
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.4e-25 Score=229.61 Aligned_cols=166 Identities=19% Similarity=0.245 Sum_probs=130.9
Q ss_pred cEEEeeeeeecCCc----ee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh---------------------
Q 004609 326 EMTVGSLSKGISDF----PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------- 377 (742)
Q Consensus 326 ~l~~~nl~~~y~~~----~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m--------------------- 377 (742)
.+.++|+++.|++. .+ ++||++.+| ++++|+||||+|||||||+| |+..+-
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~G-e~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 84 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRG-ETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAK 84 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCC-CEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHH
Confidence 57889999999752 24 999999999 99999999999999999999 665320
Q ss_pred --hhhceeecCCCCC--CchHH---------------------HHHHHHcCCccccccccccchHHHH-HHHHHHHhcCC
Q 004609 378 --SKAGLYLPAKNHP--RLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSR 431 (742)
Q Consensus 378 --aq~G~~vPa~~~~--~i~~~---------------------d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~ 431 (742)
.+...|+|+.... .++.. ..++..+|+.+.+++.+++||+||+ |+.++++++.+
T Consensus 85 ~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~ 164 (228)
T PRK10584 85 LRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGR 164 (228)
T ss_pred HHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 0123466665321 11222 2345566777778889999999999 89999999999
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcccccceecceEE
Q 004609 432 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATE 492 (742)
Q Consensus 432 ~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~l~~~a~~~~~i~~g~~~ 492 (742)
|+++||||||+|||+.....+...+.+...+.+.++|++||+.+....+++++.+.+|.+.
T Consensus 165 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~ 225 (228)
T PRK10584 165 PDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQ 225 (228)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999999999855544344588999999998866779999999988764
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.93 E-value=2e-25 Score=243.54 Aligned_cols=166 Identities=17% Similarity=0.180 Sum_probs=134.2
Q ss_pred EEEeeeeeecCC----cee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh----------------------
Q 004609 327 MTVGSLSKGISD----FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM---------------------- 377 (742)
Q Consensus 327 l~~~nl~~~y~~----~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m---------------------- 377 (742)
++++||++.|++ ..+ ++||++.+| ++++|+||||||||||||+| |+..+-
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~G-ei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~ 80 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAG-QIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA 80 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 578999999952 234 999999999 99999999999999999999 555320
Q ss_pred hhhceeecCCCCC--CchHH---------------------HHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCc
Q 004609 378 SKAGLYLPAKNHP--RLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRES 433 (742)
Q Consensus 378 aq~G~~vPa~~~~--~i~~~---------------------d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~ 433 (742)
.+...++|+.... ..+++ ..++..+|+.+..++++++|||||+ |++++++++.+|+
T Consensus 81 r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~ 160 (343)
T TIGR02314 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPK 160 (343)
T ss_pred hcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCC
Confidence 1123466666421 11222 2346677888889999999999999 9999999999999
Q ss_pred EEEEcCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 434 LVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 434 LlLLDEp~~glDp~~~~aL~~all~~l~~-~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
+|||||||++|||.....+.. ++..+.+ .|.|+|++||+++ +..+|+++..+.+|.+...
T Consensus 161 iLLlDEPts~LD~~t~~~i~~-lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~ 222 (343)
T TIGR02314 161 VLLCDEATSALDPATTQSILE-LLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQ 222 (343)
T ss_pred EEEEeCCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 999999999999999999998 5555654 4899999999998 5579999999999988644
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.93 E-value=2e-25 Score=229.66 Aligned_cols=166 Identities=19% Similarity=0.209 Sum_probs=132.7
Q ss_pred EEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh---------------hhhceeecCCC
Q 004609 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM---------------SKAGLYLPAKN 388 (742)
Q Consensus 327 l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m---------------aq~G~~vPa~~ 388 (742)
+.++|+++.|+++.+ ++||++.+| ++++|+||||+||||||+++ |++.+. .+...|+|+..
T Consensus 1 l~l~~v~~~~~~~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~~ 79 (223)
T TIGR03740 1 LETKNLSKRFGKQTAVNNISLTVPKN-SVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIESP 79 (223)
T ss_pred CEEEeEEEEECCEEEEeeeEEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcCCC
Confidence 357899999987665 999999999 99999999999999999999 554321 01123555543
Q ss_pred CC--CchHH-----------------HHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHH
Q 004609 389 HP--RLPWF-----------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSE 448 (742)
Q Consensus 389 ~~--~i~~~-----------------d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLDEp~~glDp~~ 448 (742)
.. .+++. ..++..+|+.+..++.+..||+||+ |+.++++++.+|+++||||||+|+|+..
T Consensus 80 ~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~ 159 (223)
T TIGR03740 80 PLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIG 159 (223)
T ss_pred CccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHH
Confidence 11 11222 2345667788888899999999999 8999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 449 GVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 449 ~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
...+...+. .+.+.+.++|++||+.+ +..+|+++..+.+|.+...
T Consensus 160 ~~~l~~~L~-~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~ 205 (223)
T TIGR03740 160 IQELRELIR-SFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQ 205 (223)
T ss_pred HHHHHHHHH-HHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEe
Confidence 999998544 55666889999999988 4579999999999988654
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.4e-25 Score=236.50 Aligned_cols=168 Identities=16% Similarity=0.105 Sum_probs=134.9
Q ss_pred cEEEeeeeeecC-Ccee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh-------------------hhhce
Q 004609 326 EMTVGSLSKGIS-DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAGL 382 (742)
Q Consensus 326 ~l~~~nl~~~y~-~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m-------------------aq~G~ 382 (742)
.+.++|+++.|+ +..+ ++||++.+| ++++|+|||||||||||++| |++.+- .+...
T Consensus 4 ~l~~~~l~~~~~~~~~~l~~isl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 82 (274)
T PRK13647 4 IIEVEDLHFRYKDGTKALKGLSLSIPEG-SKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVG 82 (274)
T ss_pred eEEEEEEEEEeCCCCeeeeeEEEEEcCC-CEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEE
Confidence 467899999995 4444 999999999 99999999999999999999 665321 11234
Q ss_pred eecCCCC---CCchH---------------------HHHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEEEE
Q 004609 383 YLPAKNH---PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLI 437 (742)
Q Consensus 383 ~vPa~~~---~~i~~---------------------~d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLL 437 (742)
|+|+... ...++ ++.++..+|+....++.+.+|||||+ |+.++++++.+|+++||
T Consensus 83 ~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~llll 162 (274)
T PRK13647 83 LVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVL 162 (274)
T ss_pred EEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 6666531 11121 22345667887788999999999999 89999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChhh-hhhcccccceecceEEEec
Q 004609 438 DEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL-SCLKDKDTRFENAATEFSL 495 (742)
Q Consensus 438 DEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~l-~~~a~~~~~i~~g~~~~~~ 495 (742)
||||+|||+.....+.. ++..+++.|.|+|++||+++. ..+|+++..+.+|.+..+.
T Consensus 163 DEPt~~LD~~~~~~l~~-~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g 220 (274)
T PRK13647 163 DEPMAYLDPRGQETLME-ILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEG 220 (274)
T ss_pred ECCCcCCCHHHHHHHHH-HHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEC
Confidence 99999999999999998 555555568999999999885 5799999999999987653
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.2e-25 Score=244.77 Aligned_cols=167 Identities=19% Similarity=0.213 Sum_probs=135.4
Q ss_pred EEEeeeeeec-CCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh-----------------hhhceeec
Q 004609 327 MTVGSLSKGI-SDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------SKAGLYLP 385 (742)
Q Consensus 327 l~~~nl~~~y-~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m-----------------aq~G~~vP 385 (742)
+.++|+++.| ++..+ ++||++.+| ++++|+||||||||||||+| |+..+- .+...|+|
T Consensus 4 l~i~~l~~~~~~~~~~l~~vsl~i~~G-e~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~ 82 (356)
T PRK11650 4 LKLQAVRKSYDGKTQVIKGIDLDVADG-EFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVF 82 (356)
T ss_pred EEEEeEEEEeCCCCEEEeeeeEEEcCC-CEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEe
Confidence 6789999999 66555 999999999 99999999999999999999 554321 11123566
Q ss_pred CCCC--CCchH---------------------HHHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEEEEcCCC
Q 004609 386 AKNH--PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIG 441 (742)
Q Consensus 386 a~~~--~~i~~---------------------~d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLDEp~ 441 (742)
++.. ..+++ ++.++..+|+.+..++.+++|||||+ |++++++++.+|++|||||||
T Consensus 83 Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~ 162 (356)
T PRK11650 83 QNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPL 162 (356)
T ss_pred CCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 6531 11222 23456677888889999999999999 999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 442 SGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 442 ~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
++||+..+..+...+.+...+.|.|+|++|||.+ ...+||++..+.+|.+...
T Consensus 163 s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~ 216 (356)
T PRK11650 163 SNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQI 216 (356)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEE
Confidence 9999999999999655544445899999999976 6689999999999998654
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2e-25 Score=246.47 Aligned_cols=167 Identities=20% Similarity=0.241 Sum_probs=135.2
Q ss_pred EEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh-----------------hhhceeecC
Q 004609 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------SKAGLYLPA 386 (742)
Q Consensus 327 l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m-----------------aq~G~~vPa 386 (742)
++++|+++.|++..+ ++||++.+| ++++|+||||||||||||+| |+..+- .+...|+|+
T Consensus 4 l~i~~l~~~~~~~~vl~~vsl~i~~G-e~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q 82 (369)
T PRK11000 4 VTLRNVTKAYGDVVISKDINLDIHEG-EFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQ 82 (369)
T ss_pred EEEEEEEEEeCCeEEEeeeEEEEcCC-CEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEeC
Confidence 678999999987665 999999999 99999999999999999999 665321 111236666
Q ss_pred CCC--CCchH---------------------HHHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCC
Q 004609 387 KNH--PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGS 442 (742)
Q Consensus 387 ~~~--~~i~~---------------------~d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLDEp~~ 442 (742)
+.. ..+++ ++.++..+|+.+..++.+++|||||+ |++++++++.+|++|||||||+
T Consensus 83 ~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts 162 (369)
T PRK11000 83 SYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLS 162 (369)
T ss_pred CcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 531 11222 22345667888888999999999999 9999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 443 GTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 443 glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
|||+..+..+...+.+...+.+.|+|++|||.+ +..+|+++..+.+|.+...
T Consensus 163 ~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~ 215 (369)
T PRK11000 163 NLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQV 215 (369)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 999999999998555444445889999999987 6679999999999988654
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.6e-25 Score=231.43 Aligned_cols=166 Identities=20% Similarity=0.268 Sum_probs=133.4
Q ss_pred EEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh--------------------hhhcee
Q 004609 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------SKAGLY 383 (742)
Q Consensus 327 l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m--------------------aq~G~~ 383 (742)
++++|+++.|+++.+ ++||++.+| ++++|+||||+|||||||+| |++.+- .+...|
T Consensus 4 l~~~~l~~~~~~~~~l~~~sl~i~~G-e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 82 (241)
T PRK10895 4 LTAKNLAKAYKGRRVVEDVSLTVNSG-EIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGY 82 (241)
T ss_pred EEEeCcEEEeCCEEEEeeeeEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEE
Confidence 678899999987665 999999999 99999999999999999999 554320 112346
Q ss_pred ecCCCCC--CchH----------------------HHHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEEEEc
Q 004609 384 LPAKNHP--RLPW----------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLID 438 (742)
Q Consensus 384 vPa~~~~--~i~~----------------------~d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLD 438 (742)
+|+.... .+++ .+.++..+|+.+..++.+.+|||||+ |++++++++.+|+++|||
T Consensus 83 ~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD 162 (241)
T PRK10895 83 LPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLD 162 (241)
T ss_pred eccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 6665311 1122 22345556666677888999999999 899999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 439 EIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 439 Ep~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
|||+|+|+.....+.. ++..+.+.|.++|++||+.+ +..+|++++.+.+|.+...
T Consensus 163 EPt~~LD~~~~~~l~~-~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~ 218 (241)
T PRK10895 163 EPFAGVDPISVIDIKR-IIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAH 218 (241)
T ss_pred CCcccCCHHHHHHHHH-HHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEee
Confidence 9999999999999988 55566667889999999985 7789999999999988654
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.2e-26 Score=222.81 Aligned_cols=168 Identities=23% Similarity=0.333 Sum_probs=143.6
Q ss_pred CcEEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhh-------------------hhhhc-
Q 004609 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKAG- 381 (742)
Q Consensus 325 ~~l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~-------------------maq~G- 381 (742)
+.+.++|+.|+|+.+.| ++||++.+| +++++.||||+||||.+.++ |++.+ .|+.|
T Consensus 3 ~~L~a~~l~K~y~kr~Vv~~Vsl~v~~G-EiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGi 81 (243)
T COG1137 3 STLVAENLAKSYKKRKVVNDVSLEVNSG-EIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGI 81 (243)
T ss_pred cEEEehhhhHhhCCeeeeeeeeEEEcCC-cEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCc
Confidence 35788999999998776 999999999 99999999999999999998 77643 25555
Q ss_pred eeecCCCCC--CchH-----------------------HHHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEE
Q 004609 382 LYLPAKNHP--RLPW-----------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLV 435 (742)
Q Consensus 382 ~~vPa~~~~--~i~~-----------------------~d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~Ll 435 (742)
.|.||+.+. .+++ .+.++..+.+.+..+++..+||||++ |+-+|++++.+|+++
T Consensus 82 gYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~fi 161 (243)
T COG1137 82 GYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFI 161 (243)
T ss_pred ccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCEE
Confidence 477776521 2222 33567777778888899999999999 888999999999999
Q ss_pred EEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecC-hhhhhhcccccceecceEEEe
Q 004609 436 LIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHY-ADLSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 436 LLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~-~~l~~~a~~~~~i~~g~~~~~ 494 (742)
|||||++|.||..-..|-. ++.+|+++|.-|++|-|+ .+...+||+.+.+..|.+.+.
T Consensus 162 LLDEPFAGVDPiaV~dIq~-iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~ 220 (243)
T COG1137 162 LLDEPFAGVDPIAVIDIQR-IIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAE 220 (243)
T ss_pred EecCCccCCCchhHHHHHH-HHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEec
Confidence 9999999999999999988 889999999999999999 567889999999999998765
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.9e-25 Score=244.17 Aligned_cols=169 Identities=18% Similarity=0.214 Sum_probs=136.3
Q ss_pred CCcEEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhhh-------------------hhc
Q 004609 324 NSEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS-------------------KAG 381 (742)
Q Consensus 324 ~~~l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~ma-------------------q~G 381 (742)
.|.++++||++.|++..+ ++||++.+| ++++|+|||||||||||++| |+..+-+ +..
T Consensus 3 ~~~l~~~~l~~~~~~~~~l~~vsl~i~~G-e~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~i 81 (362)
T TIGR03258 3 CGGIRIDHLRVAYGANTVLDDLSLEIEAG-ELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGL 81 (362)
T ss_pred ceEEEEEEEEEEECCeEEEeeeEEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCE
Confidence 467899999999987655 999999999 99999999999999999999 5543321 111
Q ss_pred eeecCCCC--CCchH---------------------HHHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEEEE
Q 004609 382 LYLPAKNH--PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLI 437 (742)
Q Consensus 382 ~~vPa~~~--~~i~~---------------------~d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLL 437 (742)
.++|++.. ..+++ ++.++..+|+.+..++.+.+|||||+ |++++++++.+|++|||
T Consensus 82 g~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLL 161 (362)
T TIGR03258 82 ALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLL 161 (362)
T ss_pred EEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 24444431 11122 23456677888889999999999999 99999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHhcC--CcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 438 DEIGSGTDPSEGVALATSILQYLRDR--VGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 438 DEp~~glDp~~~~aL~~all~~l~~~--~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
|||++|||+..+..|...+. .+.+. |.|+|++|||.+ ...++|++..+.+|.+...
T Consensus 162 DEP~s~LD~~~r~~l~~~l~-~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~ 220 (362)
T TIGR03258 162 DEPLSALDANIRANMREEIA-ALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAH 220 (362)
T ss_pred cCccccCCHHHHHHHHHHHH-HHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999998554 45544 789999999987 5678999999999998754
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=99.92 E-value=3e-25 Score=229.27 Aligned_cols=166 Identities=25% Similarity=0.263 Sum_probs=130.2
Q ss_pred EEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh--------------------hhhcee
Q 004609 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------SKAGLY 383 (742)
Q Consensus 327 l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m--------------------aq~G~~ 383 (742)
++++||++.|+++++ ++||++.+| ++++|+||||||||||||+| |++.+. .+...|
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~G-e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (230)
T TIGR03410 1 LEVSNLNVYYGQSHILRGVSLEVPKG-EVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAY 79 (230)
T ss_pred CEEEeEEEEeCCeEEecceeeEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEE
Confidence 357899999987665 999999999 99999999999999999999 665321 112346
Q ss_pred ecCCCCC--CchHHH------------------HHHHHcC-CccccccccccchHHHH-HHHHHHHhcCCCcEEEEcCCC
Q 004609 384 LPAKNHP--RLPWFD------------------LILADIG-DHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIG 441 (742)
Q Consensus 384 vPa~~~~--~i~~~d------------------~il~~ig-~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLDEp~ 441 (742)
+|+.... .+++.+ .++..++ ..+..++.+++|||||+ |++++++++.+|+++||||||
T Consensus 80 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt 159 (230)
T TIGR03410 80 VPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPT 159 (230)
T ss_pred eccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCc
Confidence 6665421 112222 2333343 35567889999999999 899999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhc-CCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 442 SGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 442 ~glDp~~~~aL~~all~~l~~-~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
+|||+.....+...+.+ +.+ .+.|+|++||+.+ +..+++++..+.+|.+...
T Consensus 160 ~~LD~~~~~~l~~~l~~-~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~ 213 (230)
T TIGR03410 160 EGIQPSIIKDIGRVIRR-LRAEGGMAILLVEQYLDFARELADRYYVMERGRVVAS 213 (230)
T ss_pred ccCCHHHHHHHHHHHHH-HHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999985554 554 4789999999988 5568999999999988654
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.8e-25 Score=229.18 Aligned_cols=167 Identities=19% Similarity=0.206 Sum_probs=131.1
Q ss_pred cEEEeeeeeecCC----cee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh---------------------
Q 004609 326 EMTVGSLSKGISD----FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------- 377 (742)
Q Consensus 326 ~l~~~nl~~~y~~----~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m--------------------- 377 (742)
.+.++||++.|++ ..+ ++||++.+| ++++|+||||||||||||+| |++.+-
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~ 83 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEG-EMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAE 83 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCC-cEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHH
Confidence 4788999999964 234 999999999 99999999999999999999 665320
Q ss_pred --hhhceeecCCCCC--CchH---------------------HHHHHHHcCCccccccccccchHHHH-HHHHHHHhcCC
Q 004609 378 --SKAGLYLPAKNHP--RLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSR 431 (742)
Q Consensus 378 --aq~G~~vPa~~~~--~i~~---------------------~d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~ 431 (742)
.+...|+|+.... .+++ +..++..+|+.+..++.+.+|||||+ |++++++++.+
T Consensus 84 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~ 163 (233)
T PRK11629 84 LRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNN 163 (233)
T ss_pred HHhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 0123466766311 1121 22346667887778899999999999 89999999999
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHHHHHHHHh-cCCcEEEEEecChhhhhhcccccceecceEEEe
Q 004609 432 ESLVLIDEIGSGTDPSEGVALATSILQYLR-DRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 432 ~~LlLLDEp~~glDp~~~~aL~~all~~l~-~~~~~vlitTH~~~l~~~a~~~~~i~~g~~~~~ 494 (742)
|+++||||||+|||+.....+.. ++..++ +.|.++|++||+.+....+++.+.+.+|.+...
T Consensus 164 p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~ 226 (233)
T PRK11629 164 PRLVLADEPTGNLDARNADSIFQ-LLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAE 226 (233)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-HHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEE
Confidence 99999999999999999999998 455554 458899999999886555567788888887543
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.92 E-value=3e-25 Score=243.47 Aligned_cols=168 Identities=21% Similarity=0.240 Sum_probs=137.6
Q ss_pred cEEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh-----------------hhhceeec
Q 004609 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------SKAGLYLP 385 (742)
Q Consensus 326 ~l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m-----------------aq~G~~vP 385 (742)
.++++||++.|++..+ ++||++.+| ++++|+||||||||||||+| |+..+- .+...++|
T Consensus 4 ~l~~~~l~~~~~~~~~l~~vs~~i~~G-e~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~ 82 (353)
T TIGR03265 4 YLSIDNIRKRFGAFTALKDISLSVKKG-EFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVF 82 (353)
T ss_pred EEEEEEEEEEeCCeEEEEeeEEEEcCC-CEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEe
Confidence 4789999999988665 899999999 99999999999999999999 555321 11234566
Q ss_pred CCCC--CCchH---------------------HHHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEEEEcCCC
Q 004609 386 AKNH--PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIG 441 (742)
Q Consensus 386 a~~~--~~i~~---------------------~d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLDEp~ 441 (742)
++.. ..+++ ++.++..+|+.+.+++.+.+|||||+ |++++++++.+|+++|||||+
T Consensus 83 Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~ 162 (353)
T TIGR03265 83 QSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPL 162 (353)
T ss_pred CCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 6531 11222 23456677888889999999999999 999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 442 SGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 442 ~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
++||+..+..+...+.+...+.+.|+|++|||.+ ...+||++..+.+|.+...
T Consensus 163 s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~ 216 (353)
T TIGR03265 163 SALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQV 216 (353)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999666554556899999999987 5689999999999998654
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=4e-25 Score=232.13 Aligned_cols=166 Identities=17% Similarity=0.221 Sum_probs=133.5
Q ss_pred EEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhh-------------------hhhhceee
Q 004609 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKAGLYL 384 (742)
Q Consensus 327 l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~-------------------maq~G~~v 384 (742)
+.++|++++|+++.+ ++||++.+| ++++|+|||||||||||++| |++.+ ..+...|+
T Consensus 3 l~~~~l~~~~~~~~il~~is~~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 81 (255)
T PRK11231 3 LRTENLTVGYGTKRILNDLSLSLPTG-KITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALL 81 (255)
T ss_pred EEEEeEEEEECCEEEEeeeeeEEcCC-cEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEEe
Confidence 578999999987666 999999999 99999999999999999999 66532 01123466
Q ss_pred cCCCCC--CchHH-------------------------HHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEEE
Q 004609 385 PAKNHP--RLPWF-------------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVL 436 (742)
Q Consensus 385 Pa~~~~--~i~~~-------------------------d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlL 436 (742)
|+.... .+++. ..++..+|+....++.+++|||||+ |+.++++++.+|+++|
T Consensus 82 ~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 161 (255)
T PRK11231 82 PQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVL 161 (255)
T ss_pred cccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 665421 11111 2234556777778899999999999 8999999999999999
Q ss_pred EcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 437 IDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 437 LDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
|||||+|+|+.....+...+ ..+.+.+.|+|++||+.+ +..++++++.+.+|.+...
T Consensus 162 lDEP~~~LD~~~~~~l~~~l-~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~ 219 (255)
T PRK11231 162 LDEPTTYLDINHQVELMRLM-RELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQ 219 (255)
T ss_pred EcCCcccCCHHHHHHHHHHH-HHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEE
Confidence 99999999999999999855 455556889999999988 5789999999999988654
|
|
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.7e-25 Score=230.77 Aligned_cols=163 Identities=17% Similarity=0.230 Sum_probs=126.9
Q ss_pred EEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhhhhhcee--------ecCCC---CCCc
Q 004609 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMSKAGLY--------LPAKN---HPRL 392 (742)
Q Consensus 327 l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~maq~G~~--------vPa~~---~~~i 392 (742)
+.+.|+++.|+++++ ++||++.+| ++++|+||||||||||++++ |++.+- .|.. .+... ...+
T Consensus 23 l~~~~~~~~~~~~~il~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~p~--~G~i~~~g~~~~~~~~~~~~~~~~ 99 (224)
T cd03220 23 LGILGRKGEVGEFWALKDVSFEVPRG-ERIGLIGRNGAGKSTLLRLLAGIYPPD--SGTVTVRGRVSSLLGLGGGFNPEL 99 (224)
T ss_pred hhhhhhhhhcCCeEEEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCC--ceEEEECCEEchhhcccccCCCCC
Confidence 567889999998776 999999999 99999999999999999999 544321 0100 00000 0011
Q ss_pred hH---------------------HHHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHH
Q 004609 393 PW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGV 450 (742)
Q Consensus 393 ~~---------------------~d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLDEp~~glDp~~~~ 450 (742)
++ +..++..+|+.+.+++.++.|||||+ |++++++++.+|+++||||||+|||+....
T Consensus 100 tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~ 179 (224)
T cd03220 100 TGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQE 179 (224)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHH
Confidence 11 12334556777778899999999999 899999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEE
Q 004609 451 ALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF 493 (742)
Q Consensus 451 aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~ 493 (742)
.+...+.+ +.+.+.++|++||+.+ +..+++++..+.+|.+..
T Consensus 180 ~~~~~l~~-~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 222 (224)
T cd03220 180 KCQRRLRE-LLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRF 222 (224)
T ss_pred HHHHHHHH-HHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 99995555 4455789999999987 567899999999988753
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.7e-25 Score=230.69 Aligned_cols=167 Identities=21% Similarity=0.235 Sum_probs=131.5
Q ss_pred cEEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhh--------------------hhhhce
Q 004609 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL--------------------MSKAGL 382 (742)
Q Consensus 326 ~l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~--------------------maq~G~ 382 (742)
.+.++|+++.|++..+ ++||++.+| ++++|+||||||||||||+| |+..+ ..+...
T Consensus 5 ~l~~~~l~~~~~~~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 83 (237)
T PRK11614 5 MLSFDKVSAHYGKIQALHEVSLHINQG-EIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVA 83 (237)
T ss_pred EEEEEeEEEeeCCceeeeeeEEEEcCC-cEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEE
Confidence 4678999999987655 999999999 99999999999999999999 65432 111234
Q ss_pred eecCCCCC--CchHHHH-------------------HHHHc-CCccccccccccchHHHH-HHHHHHHhcCCCcEEEEcC
Q 004609 383 YLPAKNHP--RLPWFDL-------------------ILADI-GDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDE 439 (742)
Q Consensus 383 ~vPa~~~~--~i~~~d~-------------------il~~i-g~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLDE 439 (742)
|+|+.... .++++++ ++..+ +..+..+..+++||+||+ |+.++++++.+|+++||||
T Consensus 84 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~illlDE 163 (237)
T PRK11614 84 IVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDE 163 (237)
T ss_pred EeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEcC
Confidence 56655321 1222222 23334 345556788999999999 8999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 440 IGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 440 p~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
||+|+|+.....+...+ ..+.+.|.|+|++||+.+ +..+|++++.+.+|.+...
T Consensus 164 Pt~~LD~~~~~~l~~~l-~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~ 218 (237)
T PRK11614 164 PSLGLAPIIIQQIFDTI-EQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLE 218 (237)
T ss_pred ccccCCHHHHHHHHHHH-HHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEee
Confidence 99999999999999844 456666899999999986 7789999999999988654
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.9e-25 Score=230.35 Aligned_cols=165 Identities=21% Similarity=0.200 Sum_probs=131.0
Q ss_pred EEeeeeeecCC-cee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh-------------------hhhceee
Q 004609 328 TVGSLSKGISD-FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAGLYL 384 (742)
Q Consensus 328 ~~~nl~~~y~~-~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m-------------------aq~G~~v 384 (742)
.++|+++.|++ ..+ ++||++.+| ++++|+||||+|||||||+| |+..+- .....|+
T Consensus 2 ~~~~l~~~~~~~~~~l~~is~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (242)
T cd03295 2 EFENVTKRYGGGKKAVNNLNLEIAKG-EFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYV 80 (242)
T ss_pred EEEEEEEEeCCcceEeeeeEEEECCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEE
Confidence 57899999987 555 999999999 99999999999999999999 554321 1122466
Q ss_pred cCCCCC--CchHH---------------------HHHHHHcCCcc--ccccccccchHHHH-HHHHHHHhcCCCcEEEEc
Q 004609 385 PAKNHP--RLPWF---------------------DLILADIGDHQ--SLEQNLSTFSGHIS-RIVDILELVSRESLVLID 438 (742)
Q Consensus 385 Pa~~~~--~i~~~---------------------d~il~~ig~~~--~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLD 438 (742)
|+.... .+++. ..++..+|+.. ..++.+++|||||+ |++++++++.+|+++|||
T Consensus 81 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD 160 (242)
T cd03295 81 IQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMD 160 (242)
T ss_pred ccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEec
Confidence 665311 11221 23456667764 67889999999999 899999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 439 EIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 439 Ep~~glDp~~~~aL~~all~~l~~-~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
|||+|+|+.....+...+. .+.+ .|.++|++||+.+ +..+++++..+.+|.+...
T Consensus 161 EPt~~LD~~~~~~l~~~L~-~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~ 217 (242)
T cd03295 161 EPFGALDPITRDQLQEEFK-RLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQV 217 (242)
T ss_pred CCcccCCHHHHHHHHHHHH-HHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999998444 4544 4889999999987 6789999999999988654
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=4e-25 Score=234.74 Aligned_cols=166 Identities=20% Similarity=0.197 Sum_probs=132.8
Q ss_pred EEEeeeeeecC-Ccee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh--------------------hhhce
Q 004609 327 MTVGSLSKGIS-DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------SKAGL 382 (742)
Q Consensus 327 l~~~nl~~~y~-~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m--------------------aq~G~ 382 (742)
++++|+++.|+ +..+ ++||++.+| ++++|+||||+|||||||+| |++.+. .+...
T Consensus 2 l~~~~l~~~~~~~~~~l~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (274)
T PRK13644 2 IRLENVSYSYPDGTPALENINLVIKKG-EYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVG 80 (274)
T ss_pred EEEEEEEEEcCCCCceeeeeEEEEeCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheE
Confidence 56899999995 4434 999999999 99999999999999999999 664321 11234
Q ss_pred eecCCCC---CCchH---------------------HHHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEEEE
Q 004609 383 YLPAKNH---PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLI 437 (742)
Q Consensus 383 ~vPa~~~---~~i~~---------------------~d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLL 437 (742)
|+|+... ...++ +..++..+|+....++.+..||+||+ |+.++++++.+|+++||
T Consensus 81 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lllL 160 (274)
T PRK13644 81 IVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIF 160 (274)
T ss_pred EEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 5666531 11122 12335567777888899999999999 89999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcccccceecceEEEe
Q 004609 438 DEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 438 DEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~l~~~a~~~~~i~~g~~~~~ 494 (742)
||||+|||+.....+... +..+.+.|.|+|++||+.+....|+++..+.+|.+...
T Consensus 161 DEPt~gLD~~~~~~l~~~-l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~ 216 (274)
T PRK13644 161 DEVTSMLDPDSGIAVLER-IKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLE 216 (274)
T ss_pred eCCcccCCHHHHHHHHHH-HHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEE
Confidence 999999999999999984 55566668999999999886677999999999998755
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.7e-25 Score=227.09 Aligned_cols=166 Identities=17% Similarity=0.171 Sum_probs=129.4
Q ss_pred EEEeeeeeecCCc----ee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh----------------------
Q 004609 327 MTVGSLSKGISDF----PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM---------------------- 377 (742)
Q Consensus 327 l~~~nl~~~y~~~----~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m---------------------- 377 (742)
+.++||++.|++. .+ ++||++.+| ++++|+|||||||||||++| |++.+-
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKG-ETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIR 80 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHh
Confidence 5789999999764 44 999999999 99999999999999999999 665320
Q ss_pred hhhceeecCCCC----CCchHHH-----------------------HHHHHcCCc-cccccccccchHHHH-HHHHHHHh
Q 004609 378 SKAGLYLPAKNH----PRLPWFD-----------------------LILADIGDH-QSLEQNLSTFSGHIS-RIVDILEL 428 (742)
Q Consensus 378 aq~G~~vPa~~~----~~i~~~d-----------------------~il~~ig~~-~~~~~~lstfSgg~k-rl~~~~~l 428 (742)
.+...|+|+... ..+++.+ .++..+++. ..+++.+.+|||||+ |+.+++++
T Consensus 81 ~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral 160 (228)
T cd03257 81 RKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARAL 160 (228)
T ss_pred hccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHH
Confidence 012345666531 0111111 234556664 467888999999999 89999999
Q ss_pred cCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChhh-hhhcccccceecceEEE
Q 004609 429 VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL-SCLKDKDTRFENAATEF 493 (742)
Q Consensus 429 ~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~l-~~~a~~~~~i~~g~~~~ 493 (742)
+.+|+++||||||+|||+.....+...+.+...+.|.|+|++||+.+. ..+|++++.+.+|.+..
T Consensus 161 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~ 226 (228)
T cd03257 161 ALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVE 226 (228)
T ss_pred hcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEe
Confidence 999999999999999999999999995555434448899999999884 55899999999998753
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.7e-25 Score=232.13 Aligned_cols=167 Identities=19% Similarity=0.194 Sum_probs=133.3
Q ss_pred EEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh-------------------hhhceee
Q 004609 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAGLYL 384 (742)
Q Consensus 327 l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m-------------------aq~G~~v 384 (742)
+.++|+++.|+++.+ ++||++.+| ++++|+|||||||||||++| |++.+- .+...|+
T Consensus 3 l~~~~l~~~~~~~~il~~is~~i~~G-e~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~ 81 (258)
T PRK13548 3 LEARNLSVRLGGRTLLDDVSLTLRPG-EVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVL 81 (258)
T ss_pred EEEEeEEEEeCCeeeeeeeeEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEE
Confidence 678999999987655 999999999 99999999999999999999 665321 1122466
Q ss_pred cCCCCC--CchH---------------------HHHHHHHcCCccccccccccchHHHH-HHHHHHHhc------CCCcE
Q 004609 385 PAKNHP--RLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELV------SRESL 434 (742)
Q Consensus 385 Pa~~~~--~i~~---------------------~d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~------~~~~L 434 (742)
|+.... .+++ +..++..+|+.+..++.+.+|||||+ |++++++++ .+|++
T Consensus 82 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~l 161 (258)
T PRK13548 82 PQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRW 161 (258)
T ss_pred ccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCE
Confidence 665321 1122 22345566777778899999999999 899999999 59999
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 435 VLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 435 lLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
+||||||+|||+.....+...+.+...+.+.++|++||+.+ +..+|++++.+.+|.+...
T Consensus 162 llLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~ 222 (258)
T PRK13548 162 LLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVAD 222 (258)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEee
Confidence 99999999999999999998555543266889999999987 5569999999999988654
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.6e-25 Score=229.19 Aligned_cols=166 Identities=17% Similarity=0.192 Sum_probs=131.9
Q ss_pred EEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh-------------------hhhceee
Q 004609 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAGLYL 384 (742)
Q Consensus 327 l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m-------------------aq~G~~v 384 (742)
+.++|+++.|++..+ ++||++.+| ++++|+||||||||||||+| |++.+- .+...|+
T Consensus 4 l~~~~l~~~~~~~~~l~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~ 82 (241)
T PRK14250 4 IEFKEVSYSSFGKEILKDISVKFEGG-AIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMV 82 (241)
T ss_pred EEEEeEEEEeCCeeeeeeeeEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEEE
Confidence 678999999987655 999999999 99999999999999999999 655320 1123455
Q ss_pred cCCCCC-CchH-----------------HHHHHHHcCCc-cccccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCC
Q 004609 385 PAKNHP-RLPW-----------------FDLILADIGDH-QSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGT 444 (742)
Q Consensus 385 Pa~~~~-~i~~-----------------~d~il~~ig~~-~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLDEp~~gl 444 (742)
|+.... ..++ ...++..+|+. +..++.+..|||||+ |+.++++++.+|+++||||||+||
T Consensus 83 ~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~L 162 (241)
T PRK14250 83 FQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSAL 162 (241)
T ss_pred ecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 665310 0011 22346667775 467889999999999 899999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhc-CCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 445 DPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 445 Dp~~~~aL~~all~~l~~-~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
|+.....+...+. .+.+ .|.|+|++||+.+ +..+|++++.+.+|.+...
T Consensus 163 D~~~~~~l~~~l~-~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~ 213 (241)
T PRK14250 163 DPTSTEIIEELIV-KLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEY 213 (241)
T ss_pred CHHHHHHHHHHHH-HHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEe
Confidence 9999999988444 4554 4889999999988 5678999999999988654
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.8e-25 Score=225.53 Aligned_cols=163 Identities=21% Similarity=0.323 Sum_probs=129.8
Q ss_pred EEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhh------------------hhhhceeec
Q 004609 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL------------------MSKAGLYLP 385 (742)
Q Consensus 327 l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~------------------maq~G~~vP 385 (742)
++++|+++.|++..+ ++||++.+| +++|+|||||||||||+++ |++.+ ..+...|+|
T Consensus 1 i~~~~~~~~~~~~~~l~~vs~~i~~g--~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 78 (211)
T cd03264 1 LQLENLTKRYGKKRALDGVSLTLGPG--MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLP 78 (211)
T ss_pred CEEEEEEEEECCEEEEcceeEEEcCC--cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEec
Confidence 357899999987655 999999997 8999999999999999999 66532 012234666
Q ss_pred CCCCC--CchHH---------------------HHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEEEEcCCC
Q 004609 386 AKNHP--RLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIG 441 (742)
Q Consensus 386 a~~~~--~i~~~---------------------d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLDEp~ 441 (742)
+.... .+++. +.++..+|+.+..++.+.+|||||+ |++++++++.+|+++||||||
T Consensus 79 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt 158 (211)
T cd03264 79 QEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPT 158 (211)
T ss_pred CCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 65421 11221 2345566777777899999999999 899999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChhh-hhhcccccceecceEEE
Q 004609 442 SGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL-SCLKDKDTRFENAATEF 493 (742)
Q Consensus 442 ~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~l-~~~a~~~~~i~~g~~~~ 493 (742)
+|||+.....+.. ++..+.+ +.|+|++||+.+. ..+++++..+.+|.+..
T Consensus 159 ~~LD~~~~~~l~~-~l~~~~~-~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~ 209 (211)
T cd03264 159 AGLDPEERIRFRN-LLSELGE-DRIVILSTHIVEDVESLCNQVAVLNKGKLVF 209 (211)
T ss_pred ccCCHHHHHHHHH-HHHHHhC-CCEEEEEcCCHHHHHHhCCEEEEEECCEEEe
Confidence 9999999999998 5556665 4899999999884 57899999999988753
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=5e-25 Score=237.37 Aligned_cols=166 Identities=16% Similarity=0.154 Sum_probs=134.4
Q ss_pred EEEeeeeeecCCc------ee-cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh---------------------
Q 004609 327 MTVGSLSKGISDF------PV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------- 377 (742)
Q Consensus 327 l~~~nl~~~y~~~------~v-~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m--------------------- 377 (742)
+.++||++.|++. .+ ++||++.+| ++++|+|||||||||||++| |++.+-
T Consensus 3 i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~G-e~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (305)
T PRK13651 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQG-EFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81 (305)
T ss_pred EEEEEEEEEECCCCCccccceeeeEEEEeCC-CEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence 6789999999752 33 999999999 99999999999999999999 664320
Q ss_pred ----------------------hhhceeecCCCC---CCchH---------------------HHHHHHHcCCc-ccccc
Q 004609 378 ----------------------SKAGLYLPAKNH---PRLPW---------------------FDLILADIGDH-QSLEQ 410 (742)
Q Consensus 378 ----------------------aq~G~~vPa~~~---~~i~~---------------------~d~il~~ig~~-~~~~~ 410 (742)
.+...|+|+... ....+ +..++..+|+. +..++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~ 161 (305)
T PRK13651 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQR 161 (305)
T ss_pred ccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhC
Confidence 111246777531 11111 23446677885 67899
Q ss_pred ccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceec
Q 004609 411 NLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFEN 488 (742)
Q Consensus 411 ~lstfSgg~k-rl~~~~~l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~ 488 (742)
++.+|||||+ |++++++++.+|+++||||||+|||+.....+.. ++..+++.|.|+|++|||.+ +..+|++++.+.+
T Consensus 162 ~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~-~l~~l~~~g~tiiivtHd~~~~~~~adrv~vl~~ 240 (305)
T PRK13651 162 SPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILE-IFDNLNKQGKTIILVTHDLDNVLEWTKRTIFFKD 240 (305)
T ss_pred ChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHHCCCEEEEEeeCHHHHHHhCCEEEEEEC
Confidence 9999999999 8999999999999999999999999999999988 55666667899999999987 6789999999999
Q ss_pred ceEEEe
Q 004609 489 AATEFS 494 (742)
Q Consensus 489 g~~~~~ 494 (742)
|.+..+
T Consensus 241 G~i~~~ 246 (305)
T PRK13651 241 GKIIKD 246 (305)
T ss_pred CEEEEE
Confidence 998765
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.2e-25 Score=242.05 Aligned_cols=169 Identities=15% Similarity=0.154 Sum_probs=135.9
Q ss_pred CcEEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh-----------------hhhceee
Q 004609 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------SKAGLYL 384 (742)
Q Consensus 325 ~~l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m-----------------aq~G~~v 384 (742)
..+.++||++.|++..+ ++||++.+| ++++|+||||||||||||+| |+..+- .+.-.++
T Consensus 5 ~~l~~~~l~~~~~~~~~l~~isl~i~~G-e~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v 83 (351)
T PRK11432 5 NFVVLKNITKRFGSNTVIDNLNLTIKQG-TMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMV 83 (351)
T ss_pred cEEEEEeEEEEECCeEEEeeeEEEEcCC-CEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEE
Confidence 36789999999987664 899999999 99999999999999999999 555321 0112355
Q ss_pred cCCCC--CCchHH---------------------HHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEEEEcCC
Q 004609 385 PAKNH--PRLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEI 440 (742)
Q Consensus 385 Pa~~~--~~i~~~---------------------d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLDEp 440 (742)
|++.. ..+++. +.++..+|+.+..++.+++|||||+ |++++++++.+|+++|||||
T Consensus 84 fQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP 163 (351)
T PRK11432 84 FQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEP 163 (351)
T ss_pred eCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 55431 112222 2345667788888999999999999 99999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 441 GSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 441 ~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
++|||+..+..+...+.+...+.+.|+|++|||.+ ...+||++..+.+|.+...
T Consensus 164 ~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~ 218 (351)
T PRK11432 164 LSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQI 218 (351)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999998555444455889999999987 5689999999999998754
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.1e-25 Score=225.10 Aligned_cols=166 Identities=18% Similarity=0.225 Sum_probs=131.8
Q ss_pred EEeeeeeecCCceecccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh-----------------hhhceeecCCCC
Q 004609 328 TVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------SKAGLYLPAKNH 389 (742)
Q Consensus 328 ~~~nl~~~y~~~~v~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m-----------------aq~G~~vPa~~~ 389 (742)
.++||++.|+....++||++.+| ++++|+||||+|||||||+| |++.+- .+...|+|+...
T Consensus 2 ~~~~l~~~~~~~~~~~s~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~ 80 (213)
T TIGR01277 2 ALDKVRYEYEHLPMEFDLNVADG-EIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQENN 80 (213)
T ss_pred eEEeeeEEeCCcceeeEEEEeCC-cEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEeccCc
Confidence 57899999976445999999999 99999999999999999999 665321 112346666531
Q ss_pred C--CchH---------------------HHHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCC
Q 004609 390 P--RLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTD 445 (742)
Q Consensus 390 ~--~i~~---------------------~d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLDEp~~glD 445 (742)
. .+++ +..++..+|+.+..++.+.+||+||+ |+.++++++.+|+++||||||+|+|
T Consensus 81 ~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD 160 (213)
T TIGR01277 81 LFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALD 160 (213)
T ss_pred cCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCC
Confidence 1 1122 12345666777778899999999999 8999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 446 PSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 446 p~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
+.....+...+.+...+.+.|+|++||+.+ +..++++.+.+.+|.+...
T Consensus 161 ~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~ 210 (213)
T TIGR01277 161 PLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVV 210 (213)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEe
Confidence 999999999555443445789999999987 4678999999999987654
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.5e-25 Score=228.97 Aligned_cols=167 Identities=16% Similarity=0.253 Sum_probs=133.1
Q ss_pred cEEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh-------------------hhhc-e
Q 004609 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAG-L 382 (742)
Q Consensus 326 ~l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m-------------------aq~G-~ 382 (742)
.+.++|+++.|++..+ ++||++.+| ++++|+|||||||||||++| |++.+- .+.+ .
T Consensus 5 ~l~~~~l~~~~~~~~~l~~is~~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 83 (255)
T PRK11300 5 LLSVSGLMMRFGGLLAVNNVNLEVREQ-EIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVV 83 (255)
T ss_pred eEEEeeEEEEECCEEEEEeeeeEEcCC-eEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeE
Confidence 5789999999987655 999999999 99999999999999999999 665321 1112 3
Q ss_pred eecCCCCC--CchHH------------------------------------HHHHHHcCCccccccccccchHHHH-HHH
Q 004609 383 YLPAKNHP--RLPWF------------------------------------DLILADIGDHQSLEQNLSTFSGHIS-RIV 423 (742)
Q Consensus 383 ~vPa~~~~--~i~~~------------------------------------d~il~~ig~~~~~~~~lstfSgg~k-rl~ 423 (742)
|+|+.... .+++. ..++..+|+.+..++++++|||||+ |+.
T Consensus 84 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~ 163 (255)
T PRK11300 84 RTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLE 163 (255)
T ss_pred EeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHHH
Confidence 45665311 11221 1234456777788899999999999 999
Q ss_pred HHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 424 DILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 424 ~~~~l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~-~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
++++++.+|+++||||||+|||+.....+.. ++..+++ .+.|+|++||+.+ +..+|+++..+.+|.+.+.
T Consensus 164 la~al~~~p~llllDEPt~~LD~~~~~~l~~-~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~ 235 (255)
T PRK11300 164 IARCMVTQPEILMLDEPAAGLNPKETKELDE-LIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLAN 235 (255)
T ss_pred HHHHHhcCCCEEEEcCCccCCCHHHHHHHHH-HHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEec
Confidence 9999999999999999999999999999998 4445555 4889999999987 4578999999999988654
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.9e-25 Score=234.06 Aligned_cols=167 Identities=19% Similarity=0.211 Sum_probs=133.6
Q ss_pred cEEEeeeeeecCC---c-ee-cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh-------------------hhh
Q 004609 326 EMTVGSLSKGISD---F-PV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKA 380 (742)
Q Consensus 326 ~l~~~nl~~~y~~---~-~v-~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m-------------------aq~ 380 (742)
.++++|+++.|++ . .+ ++||++.+| ++++|+||||||||||||+| |++.+- .+.
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQG-EWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHK 82 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhh
Confidence 3678999999963 2 33 999999999 99999999999999999999 654321 112
Q ss_pred ceeecCCCC---CCchH---------------------HHHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEE
Q 004609 381 GLYLPAKNH---PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLV 435 (742)
Q Consensus 381 G~~vPa~~~---~~i~~---------------------~d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~Ll 435 (742)
..|+|+... ...++ ++.++..+|+.+..++.+.+|||||+ |+.++++++.+|++|
T Consensus 83 i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lL 162 (279)
T PRK13650 83 IGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKII 162 (279)
T ss_pred ceEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 346666531 11122 23346667888888999999999998 899999999999999
Q ss_pred EEcCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhhcccccceecceEEEe
Q 004609 436 LIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 436 LLDEp~~glDp~~~~aL~~all~~l~~-~~~~vlitTH~~~l~~~a~~~~~i~~g~~~~~ 494 (742)
||||||+|||+.....+.. ++..+++ .|.|+|++||+.+...+|+++..+.+|.+..+
T Consensus 163 lLDEPt~~LD~~~~~~l~~-~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~ 221 (279)
T PRK13650 163 ILDEATSMLDPEGRLELIK-TIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVEST 221 (279)
T ss_pred EEECCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999998 4445554 48999999999885578999999999998765
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.4e-25 Score=235.27 Aligned_cols=166 Identities=15% Similarity=0.117 Sum_probs=133.1
Q ss_pred EEEeeeeeecCC-----cee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh---------------------
Q 004609 327 MTVGSLSKGISD-----FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------- 377 (742)
Q Consensus 327 l~~~nl~~~y~~-----~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m--------------------- 377 (742)
+.++|+++.|++ +.+ ++||++.+| ++++|+||||+|||||||+| |++.+-
T Consensus 3 i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~G-e~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 3 IKFENVDYIYSPGTPMEKKGLDNISFELEEG-SFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEcCCCCCccccceeeeEEEEeCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 578999999974 233 999999999 99999999999999999999 665320
Q ss_pred --hhhceeecCCC---CCCchHH---------------------HHHHHHcCCc-cccccccccchHHHH-HHHHHHHhc
Q 004609 378 --SKAGLYLPAKN---HPRLPWF---------------------DLILADIGDH-QSLEQNLSTFSGHIS-RIVDILELV 429 (742)
Q Consensus 378 --aq~G~~vPa~~---~~~i~~~---------------------d~il~~ig~~-~~~~~~lstfSgg~k-rl~~~~~l~ 429 (742)
.+...|+|+.. ....++. ..++..+|+. ...++.+++|||||+ |++++++++
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~ 161 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMA 161 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHH
Confidence 11234667653 1112222 2345566776 567899999999999 899999999
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 430 SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 430 ~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
.+|++|||||||+|||+.....+.. ++..+.+.|.|+|++||+++ +..+|++++.+.+|.+..+
T Consensus 162 ~~p~lLlLDEPt~gLD~~~~~~l~~-~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~ 226 (287)
T PRK13641 162 YEPEILCLDEPAAGLDPEGRKEMMQ-LFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKH 226 (287)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999988 55566666889999999988 5679999999999998754
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.3e-25 Score=234.76 Aligned_cols=166 Identities=15% Similarity=0.171 Sum_probs=133.5
Q ss_pred EEEeeeeeecCC-----cee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhh---------------------h
Q 004609 327 MTVGSLSKGISD-----FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL---------------------M 377 (742)
Q Consensus 327 l~~~nl~~~y~~-----~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~---------------------m 377 (742)
++++||++.|++ ..+ ++||++.+| ++++|+||||||||||||+| |++.+ +
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~G-e~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDG-EFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDI 81 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCC-CEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHH
Confidence 678999999964 234 999999999 99999999999999999999 66532 1
Q ss_pred hhhceeecCCCC---CCchH---------------------HHHHHHHcCCc--cccccccccchHHHH-HHHHHHHhcC
Q 004609 378 SKAGLYLPAKNH---PRLPW---------------------FDLILADIGDH--QSLEQNLSTFSGHIS-RIVDILELVS 430 (742)
Q Consensus 378 aq~G~~vPa~~~---~~i~~---------------------~d~il~~ig~~--~~~~~~lstfSgg~k-rl~~~~~l~~ 430 (742)
.+...|+|+... ...++ ++.++..+|+. ...++.++.|||||+ |+.++++++.
T Consensus 82 ~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~ 161 (287)
T PRK13637 82 RKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAM 161 (287)
T ss_pred hhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHc
Confidence 122357777631 11122 22346667776 567899999999999 8999999999
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEecChhh-hhhcccccceecceEEEe
Q 004609 431 RESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYADL-SCLKDKDTRFENAATEFS 494 (742)
Q Consensus 431 ~~~LlLLDEp~~glDp~~~~aL~~all~~l~~-~~~~vlitTH~~~l-~~~a~~~~~i~~g~~~~~ 494 (742)
+|++|||||||+|||+.....+.. ++..+.+ .|.|+|++||+++. ..+|+++..+.+|.+..+
T Consensus 162 ~P~llllDEPt~gLD~~~~~~l~~-~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~ 226 (287)
T PRK13637 162 EPKILILDEPTAGLDPKGRDEILN-KIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQ 226 (287)
T ss_pred CCCEEEEECCccCCCHHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 999999999999999999999998 4555554 48899999999884 578999999999998765
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.5e-25 Score=226.86 Aligned_cols=165 Identities=17% Similarity=0.194 Sum_probs=130.3
Q ss_pred EEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhh-----hhh---------------------
Q 004609 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLA-----SLM--------------------- 377 (742)
Q Consensus 327 l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli-----~~m--------------------- 377 (742)
++++||++.|+++.+ ++||++.+| ++++|+||||||||||||+| |+. .+-
T Consensus 1 i~~~~l~~~~~~~~~l~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (227)
T cd03260 1 IELRDLNVYYGDKHALKDISLDIPKG-EITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLEL 79 (227)
T ss_pred CEEEEEEEEcCCceeeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHH
Confidence 357899999987665 999999999 99999999999999999999 776 320
Q ss_pred hhhceeecCCCCC-CchHH----------------------HHHHHHcCCccccccc--cccchHHHH-HHHHHHHhcCC
Q 004609 378 SKAGLYLPAKNHP-RLPWF----------------------DLILADIGDHQSLEQN--LSTFSGHIS-RIVDILELVSR 431 (742)
Q Consensus 378 aq~G~~vPa~~~~-~i~~~----------------------d~il~~ig~~~~~~~~--lstfSgg~k-rl~~~~~l~~~ 431 (742)
.+...|+|+.... .+++. ..++..+|+.+.+++. +++|||||+ |++++++++.+
T Consensus 80 ~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~ 159 (227)
T cd03260 80 RRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANE 159 (227)
T ss_pred HhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcC
Confidence 1112466665411 11111 2345556776666666 499999999 89999999999
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 432 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 432 ~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
|+++||||||+|||+.....+... +..+.+. .++|++||+.+ +..+|+++..+.+|.+..+
T Consensus 160 p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~-~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~ 221 (227)
T cd03260 160 PEVLLLDEPTSALDPISTAKIEEL-IAELKKE-YTIVIVTHNMQQAARVADRTAFLLNGRLVEF 221 (227)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHH-HHHHhhC-cEEEEEeccHHHHHHhCCEEEEEeCCEEEEe
Confidence 999999999999999999999984 4455555 89999999987 5678999999999988654
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.4e-25 Score=230.36 Aligned_cols=168 Identities=18% Similarity=0.191 Sum_probs=134.0
Q ss_pred CcEEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh------------------------
Q 004609 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------------ 377 (742)
Q Consensus 325 ~~l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m------------------------ 377 (742)
+.+.++||++.|+++.+ ++||++.+| ++++|+||||+||||||++| |++.+-
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~is~~i~~G-e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 82 (257)
T PRK10619 4 NKLNVIDLHKRYGEHEVLKGVSLQANAG-DVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVA 82 (257)
T ss_pred ccEEEeeeEEEECCEEEEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccc
Confidence 56899999999987655 999999999 99999999999999999999 554321
Q ss_pred --------hhhceeecCCCCC--CchHHH----------------------HHHHHcCCcccc-ccccccchHHHH-HHH
Q 004609 378 --------SKAGLYLPAKNHP--RLPWFD----------------------LILADIGDHQSL-EQNLSTFSGHIS-RIV 423 (742)
Q Consensus 378 --------aq~G~~vPa~~~~--~i~~~d----------------------~il~~ig~~~~~-~~~lstfSgg~k-rl~ 423 (742)
.+.-.|+|+.... .+++++ .++..+|+.... ++.+++|||||+ |++
T Consensus 83 ~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~ 162 (257)
T PRK10619 83 DKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVS 162 (257)
T ss_pred cchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHH
Confidence 0112456655321 112222 234556666654 788999999999 899
Q ss_pred HHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 424 DILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 424 ~~~~l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
++++++.+|+++||||||+|||+.....+.. ++..+.+.|.++|++||+.+ +..+|+++..+.+|.+...
T Consensus 163 laral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 233 (257)
T PRK10619 163 IARALAMEPEVLLFDEPTSALDPELVGEVLR-IMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEE 233 (257)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEe
Confidence 9999999999999999999999999999998 55566666899999999987 5568999999999988754
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.4e-25 Score=229.95 Aligned_cols=166 Identities=15% Similarity=0.196 Sum_probs=133.1
Q ss_pred EEEeeeeeecCCc----e--e-cccccccCCceEEEEEeCCCCCcchHHhhHHhh-hh----------------------
Q 004609 327 MTVGSLSKGISDF----P--V-PIDIKVECETRVVVITGPNTGGKTASMKTLGLA-SL---------------------- 376 (742)
Q Consensus 327 l~~~nl~~~y~~~----~--v-~i~l~l~~g~~~~~ItGpNGsGKSTlLK~lGli-~~---------------------- 376 (742)
+++++|+|.|... + + ++||++++| ++++|+|++|+|||||+|++-++ .+
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~G-eI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~ 80 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKG-EIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQ 80 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCC-cEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHH
Confidence 5788999999751 2 2 899999999 99999999999999999999222 11
Q ss_pred hhhhceeecCCCC--CCchHH---------------------HHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCC
Q 004609 377 MSKAGLYLPAKNH--PRLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRE 432 (742)
Q Consensus 377 maq~G~~vPa~~~--~~i~~~---------------------d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~ 432 (742)
..|....+++..+ ...++| ..++..+|+.+..+++++.|||||| |+++|++++++|
T Consensus 81 ~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P 160 (339)
T COG1135 81 LRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNP 160 (339)
T ss_pred HHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCC
Confidence 1122223344321 111222 3457888999999999999999999 999999999999
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHHHHHHHh-cCCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 433 SLVLIDEIGSGTDPSEGVALATSILQYLR-DRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 433 ~LlLLDEp~~glDp~~~~aL~~all~~l~-~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
++||+||||+.|||.....|.. ++..+. +.|.|++++||-++ ++.+|++...+++|.++-.
T Consensus 161 ~iLL~DEaTSALDP~TT~sIL~-LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~ 223 (339)
T COG1135 161 KILLCDEATSALDPETTQSILE-LLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEE 223 (339)
T ss_pred CEEEecCccccCChHHHHHHHH-HHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEe
Confidence 9999999999999999999998 555554 56889999999999 7789999999999988644
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.9e-25 Score=227.85 Aligned_cols=166 Identities=21% Similarity=0.191 Sum_probs=131.8
Q ss_pred cEEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh--------------------hhhce
Q 004609 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------SKAGL 382 (742)
Q Consensus 326 ~l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m--------------------aq~G~ 382 (742)
.+.++|+++.|++..+ ++||++.+| ++++|+||||+|||||||+| |+..+- .+.-.
T Consensus 2 ~i~~~~l~~~~~~~~~l~~vs~~i~~G-e~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (242)
T TIGR03411 2 ILYLEGLSVSFDGFKALNDLSLYVDPG-ELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIG 80 (242)
T ss_pred eEEEEeeEEEcCCeEEeeeeeEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCee
Confidence 3678999999987655 999999999 99999999999999999999 554320 01123
Q ss_pred eecCCCCC--CchH-----------------------------HHHHHHHcCCccccccccccchHHHH-HHHHHHHhcC
Q 004609 383 YLPAKNHP--RLPW-----------------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVS 430 (742)
Q Consensus 383 ~vPa~~~~--~i~~-----------------------------~d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~ 430 (742)
|+|+.... .+++ ++.++..+|+.+..++.+++|||||+ |+.++++++.
T Consensus 81 ~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~ 160 (242)
T TIGR03411 81 RKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQ 160 (242)
T ss_pred EeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhc
Confidence 55554310 1111 22345667777788899999999999 8999999999
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 431 RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 431 ~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
+|+++||||||+|||+.....+...+. .+.+ +.++|++||+.+ +..+|+++..+.+|.+...
T Consensus 161 ~p~~lllDEPt~~LD~~~~~~l~~~l~-~~~~-~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~ 223 (242)
T TIGR03411 161 DPKLLLLDEPVAGMTDEETEKTAELLK-SLAG-KHSVVVVEHDMEFVRSIADKVTVLHQGSVLAE 223 (242)
T ss_pred CCCEEEecCCccCCCHHHHHHHHHHHH-HHhc-CCEEEEEECCHHHHHHhCCEEEEEECCeEEee
Confidence 999999999999999999999998444 4555 689999999988 5578999999999988654
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.9e-25 Score=233.56 Aligned_cols=167 Identities=19% Similarity=0.158 Sum_probs=133.9
Q ss_pred cEEEeeeeeecCC--cee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh-------------------hhhc
Q 004609 326 EMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAG 381 (742)
Q Consensus 326 ~l~~~nl~~~y~~--~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m-------------------aq~G 381 (742)
.++++||++.|++ +++ ++||+|.+| ++++|+||||+||||||++| |++.+- .+..
T Consensus 5 ~l~~~~l~~~~~~~~~~~l~~vsl~i~~G-e~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13635 5 IIRVEHISFRYPDAATYALKDVSFSVYEG-EWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQV 83 (279)
T ss_pred eEEEEEEEEEeCCCCccceeeeEEEEcCC-CEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhhe
Confidence 4689999999974 334 999999999 99999999999999999999 555321 1123
Q ss_pred eeecCCCC---CCchH---------------------HHHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEEE
Q 004609 382 LYLPAKNH---PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVL 436 (742)
Q Consensus 382 ~~vPa~~~---~~i~~---------------------~d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlL 436 (742)
.|+|+... ...++ ++.++..+|+.+.+++.+.+|||||+ |+.++++++.+|+|||
T Consensus 84 ~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 163 (279)
T PRK13635 84 GMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIII 163 (279)
T ss_pred EEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 46665431 11122 23445667888889999999999999 8999999999999999
Q ss_pred EcCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhhcccccceecceEEEe
Q 004609 437 IDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 437 LDEp~~glDp~~~~aL~~all~~l~~-~~~~vlitTH~~~l~~~a~~~~~i~~g~~~~~ 494 (742)
|||||+|||+.....+.. ++..+.+ .|.|+|++||+.+....|+++..+.+|.+..+
T Consensus 164 LDEPt~gLD~~~~~~l~~-~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~ 221 (279)
T PRK13635 164 LDEATSMLDPRGRREVLE-TVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEE 221 (279)
T ss_pred EeCCcccCCHHHHHHHHH-HHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEE
Confidence 999999999999999998 4555555 48899999999886667999999999998765
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.7e-25 Score=228.00 Aligned_cols=166 Identities=16% Similarity=0.164 Sum_probs=133.2
Q ss_pred EEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh-------------------------h
Q 004609 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------------S 378 (742)
Q Consensus 327 l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m-------------------------a 378 (742)
+.++|+++.|+++.+ ++||++.+| ++++|+||||+|||||||+| |+..+- .
T Consensus 3 l~~~~l~~~~~~~~il~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 81 (242)
T PRK11124 3 IQLNGINCFYGAHQALFDITLDCPQG-ETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELR 81 (242)
T ss_pred EEEEeeEEEECCeeeEeeeeeEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHH
Confidence 578999999987655 999999999 99999999999999999999 554220 1
Q ss_pred hhceeecCCCCC--CchHHH----------------------HHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCc
Q 004609 379 KAGLYLPAKNHP--RLPWFD----------------------LILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRES 433 (742)
Q Consensus 379 q~G~~vPa~~~~--~i~~~d----------------------~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~ 433 (742)
+...|+|+.... .+++.+ .++..+|+...+++.+..|||||+ |++++++++.+|+
T Consensus 82 ~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~ 161 (242)
T PRK11124 82 RNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQ 161 (242)
T ss_pred hheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 112456665321 112222 234556777778899999999999 8999999999999
Q ss_pred EEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChhh-hhhcccccceecceEEEe
Q 004609 434 LVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL-SCLKDKDTRFENAATEFS 494 (742)
Q Consensus 434 LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~l-~~~a~~~~~i~~g~~~~~ 494 (742)
++||||||+|||+.....+.. ++..+.+.+.|+|++||+.+. ..++++++.+.+|.+..+
T Consensus 162 llilDEPt~~LD~~~~~~l~~-~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~ 222 (242)
T PRK11124 162 VLLFDEPTAALDPEITAQIVS-IIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQ 222 (242)
T ss_pred EEEEcCCCCcCCHHHHHHHHH-HHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEe
Confidence 999999999999999999998 555666668999999999874 578999999999988754
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.4e-25 Score=231.49 Aligned_cols=168 Identities=15% Similarity=0.172 Sum_probs=134.4
Q ss_pred CcEEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh-------------------hhhce
Q 004609 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAGL 382 (742)
Q Consensus 325 ~~l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m-------------------aq~G~ 382 (742)
..+.++|+++.|+++.+ ++||++.+| ++++|+||||||||||||+| |+..+. .+...
T Consensus 10 ~~l~i~~l~~~~~~~~il~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 88 (265)
T PRK10575 10 TTFALRNVSFRVPGRTLLHPLSLTFPAG-KVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVA 88 (265)
T ss_pred ceEEEeeEEEEECCEEEEeeeeeEEcCC-CEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheE
Confidence 36789999999987655 999999999 99999999999999999999 665320 11234
Q ss_pred eecCCCC--CCchH-------------------------HHHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcE
Q 004609 383 YLPAKNH--PRLPW-------------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESL 434 (742)
Q Consensus 383 ~vPa~~~--~~i~~-------------------------~d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~L 434 (742)
|+|+... ..+++ ++.++..+++.+.+++.+.+|||||+ |+.++++++.+|++
T Consensus 89 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~l 168 (265)
T PRK10575 89 YLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRC 168 (265)
T ss_pred EeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 6666521 11111 23345666777778899999999999 89999999999999
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 435 VLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 435 lLLDEp~~glDp~~~~aL~~all~~l~~-~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
+||||||+|||+.....+...+. .+.+ .+.++|++||+.+ +..+|++++.+.+|++...
T Consensus 169 llLDEPt~~LD~~~~~~~~~~l~-~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~ 229 (265)
T PRK10575 169 LLLDEPTSALDIAHQVDVLALVH-RLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQ 229 (265)
T ss_pred EEEcCCcccCCHHHHHHHHHHHH-HHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEe
Confidence 99999999999999999998554 4544 4889999999987 5579999999999988644
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.9e-25 Score=231.29 Aligned_cols=167 Identities=17% Similarity=0.186 Sum_probs=134.9
Q ss_pred cEEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh-------------------hhhcee
Q 004609 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAGLY 383 (742)
Q Consensus 326 ~l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m-------------------aq~G~~ 383 (742)
.+.++||+++|++..+ ++||++.+| ++++|+|||||||||||++| |+..+- .+...|
T Consensus 7 ~l~i~~l~~~~~~~~~l~~isl~i~~G-e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 85 (265)
T PRK10253 7 RLRGEQLTLGYGKYTVAENLTVEIPDG-HFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGL 85 (265)
T ss_pred EEEEEEEEEEECCEEEeeecceEECCC-CEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheEE
Confidence 6789999999987655 999999999 99999999999999999999 665320 112346
Q ss_pred ecCCCCC--CchH-------------------------HHHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEE
Q 004609 384 LPAKNHP--RLPW-------------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLV 435 (742)
Q Consensus 384 vPa~~~~--~i~~-------------------------~d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~Ll 435 (742)
+|+.... .+.+ ++.++..+|+.+..++.+++|||||+ |+.++++++.+|+++
T Consensus 86 v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~ll 165 (265)
T PRK10253 86 LAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIM 165 (265)
T ss_pred eeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCCCEE
Confidence 6665311 0111 22345566777778899999999999 899999999999999
Q ss_pred EEcCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 436 LIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 436 LLDEp~~glDp~~~~aL~~all~~l~~-~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
||||||+|||+.....+...+. .+.+ .+.++|++||+.+ +..+|++++.+.+|++..+
T Consensus 166 llDEPt~gLD~~~~~~l~~~L~-~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~ 225 (265)
T PRK10253 166 LLDEPTTWLDISHQIDLLELLS-ELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQ 225 (265)
T ss_pred EEeCccccCCHHHHHHHHHHHH-HHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999554 4554 5889999999987 6789999999999988654
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.4e-25 Score=225.17 Aligned_cols=165 Identities=18% Similarity=0.185 Sum_probs=126.6
Q ss_pred cEEEeeeeeecCC--cee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh-------------------hhhc
Q 004609 326 EMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAG 381 (742)
Q Consensus 326 ~l~~~nl~~~y~~--~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m-------------------aq~G 381 (742)
.++++|+++.|++ ..+ ++||++.+| ++++|+||||+||||||++| |+..+- ....
T Consensus 2 ~l~~~~l~~~~~~~~~~~l~~i~~~i~~G-~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (220)
T cd03245 2 RIEFRNVSFSYPNQEIPALDNVSLTIRAG-EKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNI 80 (220)
T ss_pred eEEEEEEEEEcCCCCcccccceEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 4788999999975 334 999999999 99999999999999999999 554320 1123
Q ss_pred eeecCCCCC-CchHHH---------------HHHHHcCCcccccc-----------ccccchHHHH-HHHHHHHhcCCCc
Q 004609 382 LYLPAKNHP-RLPWFD---------------LILADIGDHQSLEQ-----------NLSTFSGHIS-RIVDILELVSRES 433 (742)
Q Consensus 382 ~~vPa~~~~-~i~~~d---------------~il~~ig~~~~~~~-----------~lstfSgg~k-rl~~~~~l~~~~~ 433 (742)
.|+|+.... ..++.+ .++..+++.+.+++ .+.+|||||+ |+.++++++.+|+
T Consensus 81 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~ 160 (220)
T cd03245 81 GYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPP 160 (220)
T ss_pred EEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCC
Confidence 466665421 112222 23444555554444 3469999999 8999999999999
Q ss_pred EEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcccccceecceEEE
Q 004609 434 LVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEF 493 (742)
Q Consensus 434 LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~l~~~a~~~~~i~~g~~~~ 493 (742)
++||||||+|||+.....+...+. .+.+. .++|++||+.++..+|++.+.+.+|.+..
T Consensus 161 llllDEPt~~LD~~~~~~l~~~l~-~~~~~-~tii~~sH~~~~~~~~d~v~~l~~g~i~~ 218 (220)
T cd03245 161 ILLLDEPTSAMDMNSEERLKERLR-QLLGD-KTLIIITHRPSLLDLVDRIIVMDSGRIVA 218 (220)
T ss_pred EEEEeCccccCCHHHHHHHHHHHH-HhcCC-CEEEEEeCCHHHHHhCCEEEEEeCCeEee
Confidence 999999999999999999999554 45554 89999999998768999999999988753
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.5e-25 Score=230.27 Aligned_cols=166 Identities=19% Similarity=0.250 Sum_probs=130.6
Q ss_pred cEEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhhh--------hhceeecCCCCC--Cc
Q 004609 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS--------KAGLYLPAKNHP--RL 392 (742)
Q Consensus 326 ~l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~ma--------q~G~~vPa~~~~--~i 392 (742)
.+.++||++.|++..+ ++||++.+| ++++|+||||||||||||+| |++.+-. ....|+|+.... .+
T Consensus 4 ~l~~~~l~~~~~~~~vl~~vs~~i~~G-e~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~~l 82 (251)
T PRK09544 4 LVSLENVSVSFGQRRVLSDVSLELKPG-KILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDTTL 82 (251)
T ss_pred EEEEeceEEEECCceEEEeEEEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEecccccccccc
Confidence 4678999999987655 999999999 99999999999999999999 6553311 112456665311 11
Q ss_pred --hH--------------HHHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHH
Q 004609 393 --PW--------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATS 455 (742)
Q Consensus 393 --~~--------------~d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLDEp~~glDp~~~~aL~~a 455 (742)
.+ +..++..+|+.+.+++.+.+|||||+ |++++++++.+|+++||||||+|||+.....+...
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~ 162 (251)
T PRK09544 83 PLTVNRFLRLRPGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDL 162 (251)
T ss_pred ChhHHHHHhccccccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHH
Confidence 11 22345677888888999999999999 89999999999999999999999999999999985
Q ss_pred HHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEE
Q 004609 456 ILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF 493 (742)
Q Consensus 456 ll~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~ 493 (742)
+.+...+.+.|+|++||+.+ +..+|++++.+.+ .+..
T Consensus 163 L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~ 200 (251)
T PRK09544 163 IDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICC 200 (251)
T ss_pred HHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEe
Confidence 55433334889999999988 4678999888865 4443
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.8e-25 Score=230.04 Aligned_cols=166 Identities=17% Similarity=0.187 Sum_probs=133.9
Q ss_pred EEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhh-------------------hhhhceee
Q 004609 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKAGLYL 384 (742)
Q Consensus 327 l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~-------------------maq~G~~v 384 (742)
+.++|+++.|++..+ ++||++.+| ++++|+||||+|||||||+| |++.+ ..+...|+
T Consensus 2 l~~~~l~~~~~~~~il~~is~~i~~G-e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (256)
T TIGR03873 2 LRLSRVSWSAGGRLIVDGVDVTAPPG-SLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALV 80 (256)
T ss_pred ceEEeEEEEECCEEEEeeeeEEEcCC-cEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEe
Confidence 578999999987666 999999999 99999999999999999999 65532 01123466
Q ss_pred cCCCCC--CchH-------------------------HHHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEEE
Q 004609 385 PAKNHP--RLPW-------------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVL 436 (742)
Q Consensus 385 Pa~~~~--~i~~-------------------------~d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlL 436 (742)
|+.... .+++ +..++..+|+.+..++.++.||+||+ |+.++++++.+|+++|
T Consensus 81 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lll 160 (256)
T TIGR03873 81 EQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLL 160 (256)
T ss_pred cccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 665311 1111 12345556777778899999999999 8999999999999999
Q ss_pred EcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 437 IDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 437 LDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
|||||+|||+.....+.. ++..+.+.+.|+|++||+.+ +..+|++++.+.+|.+..+
T Consensus 161 lDEPt~~LD~~~~~~l~~-~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~ 218 (256)
T TIGR03873 161 LDEPTNHLDVRAQLETLA-LVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAA 218 (256)
T ss_pred EcCccccCCHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEe
Confidence 999999999999999998 55556666889999999988 4579999999999988754
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.1e-24 Score=243.74 Aligned_cols=169 Identities=20% Similarity=0.221 Sum_probs=127.9
Q ss_pred cEEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh-------h-hhceeecCCCCCC--c
Q 004609 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------S-KAGLYLPAKNHPR--L 392 (742)
Q Consensus 326 ~l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m-------a-q~G~~vPa~~~~~--i 392 (742)
.+.+.|++++||++.+ ++++++.+| +.++|+|+||+|||||||+| |...+- . -.-.|+++..... .
T Consensus 3 ~i~~~~ls~~~g~~~l~~~~~l~~~~G-~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~~~~~~ 81 (530)
T COG0488 3 MITLENLSLAYGDRPLLENVSLTLNPG-ERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLDPEK 81 (530)
T ss_pred eEEEeeeEEeeCCceeecCCcceeCCC-CEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCCcCCCc
Confidence 4678999999999887 999999999 99999999999999999999 333211 0 0011333332111 0
Q ss_pred hHHH---------------------------------------------------HHHHHcCCccccccccccchHHHH-
Q 004609 393 PWFD---------------------------------------------------LILADIGDHQSLEQNLSTFSGHIS- 420 (742)
Q Consensus 393 ~~~d---------------------------------------------------~il~~ig~~~~~~~~lstfSgg~k- 420 (742)
++++ .++..+|..+. ++++++||||++
T Consensus 82 tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~~~~~~LSGG~r~ 160 (530)
T COG0488 82 TVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-DRPVSSLSGGWRR 160 (530)
T ss_pred cHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-cCchhhcCHHHHH
Confidence 1111 12333455555 899999999999
Q ss_pred HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEecCccc
Q 004609 421 RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFSLETLR 499 (742)
Q Consensus 421 rl~~~~~l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~~~~l~ 499 (742)
|+++|+++..+|++|||||||||||......|.. +|.+..+++|+||||.+ |...|++++.+.+|.+..+.+++.
T Consensus 161 Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~----~L~~~~gtviiVSHDR~FLd~V~t~I~~ld~g~l~~y~Gny~ 236 (530)
T COG0488 161 RVALARALLEEPDLLLLDEPTNHLDLESIEWLED----YLKRYPGTVIVVSHDRYFLDNVATHILELDRGKLTPYKGNYS 236 (530)
T ss_pred HHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHH----HHHhCCCcEEEEeCCHHHHHHHhhheEEecCCceeEecCCHH
Confidence 9999999999999999999999999987776665 45444569999999988 778999999999998776655544
Q ss_pred c
Q 004609 500 P 500 (742)
Q Consensus 500 ~ 500 (742)
.
T Consensus 237 ~ 237 (530)
T COG0488 237 S 237 (530)
T ss_pred H
Confidence 3
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.6e-25 Score=222.53 Aligned_cols=168 Identities=18% Similarity=0.190 Sum_probs=134.6
Q ss_pred cEEEeeeeeecCCce----e--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh--------------------h
Q 004609 326 EMTVGSLSKGISDFP----V--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------S 378 (742)
Q Consensus 326 ~l~~~nl~~~y~~~~----v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m--------------------a 378 (742)
.++++|+++.|+.+. + +|||++.+| ++++|+|++|||||||.+++ |+...- .
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~G-e~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~ 81 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERG-ETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFY 81 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCC-CEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhc
Confidence 468899999998765 4 999999999 99999999999999999999 554321 1
Q ss_pred hhceeecCCCCCCch----H-------------------HHHHHHHcCCcc-ccccccccchHHHH-HHHHHHHhcCCCc
Q 004609 379 KAGLYLPAKNHPRLP----W-------------------FDLILADIGDHQ-SLEQNLSTFSGHIS-RIVDILELVSRES 433 (742)
Q Consensus 379 q~G~~vPa~~~~~i~----~-------------------~d~il~~ig~~~-~~~~~lstfSgg~k-rl~~~~~l~~~~~ 433 (742)
+.--.|++++...+. + ..+++..+|+.. .+++.+..|||||+ |++++++++.+|+
T Consensus 82 ~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~Pk 161 (252)
T COG1124 82 RPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPK 161 (252)
T ss_pred cceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCC
Confidence 111234444432221 1 235677788754 57899999999999 9999999999999
Q ss_pred EEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 434 LVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 434 LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
+||+||||+.||+.-.+.+.+.+.+.-.+.+.|.||+|||.. +..+|+++..|.+|.++-.
T Consensus 162 lLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~ 223 (252)
T COG1124 162 LLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEI 223 (252)
T ss_pred EEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEe
Confidence 999999999999999999999555544556789999999998 5678999999999988644
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-24 Score=215.75 Aligned_cols=164 Identities=20% Similarity=0.268 Sum_probs=131.9
Q ss_pred cEEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhHHhh-h---------------------------
Q 004609 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLA-S--------------------------- 375 (742)
Q Consensus 326 ~l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~lGli-~--------------------------- 375 (742)
.++++||++.||++.+ ++++.++++ .+.+|+||+|||||||||++..+ .
T Consensus 7 ~~~~~~l~~yYg~~~aL~~i~l~i~~~-~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~ 85 (253)
T COG1117 7 AIEVRDLNLYYGDKHALKDINLDIPKN-KVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVE 85 (253)
T ss_pred eeEecceeEEECchhhhccCceeccCC-ceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHH
Confidence 5789999999998776 999999999 99999999999999999999322 1
Q ss_pred hhhhhceeecCCCC-CCchHHHHHHHHc---C----------------------CccccccccccchHHHH-HHHHHHHh
Q 004609 376 LMSKAGLYLPAKNH-PRLPWFDLILADI---G----------------------DHQSLEQNLSTFSGHIS-RIVDILEL 428 (742)
Q Consensus 376 ~maq~G~~vPa~~~-~~i~~~d~il~~i---g----------------------~~~~~~~~lstfSgg~k-rl~~~~~l 428 (742)
+..+.| .|++.++ ..++++|++..-. | ..|.++++...|||||+ |+++|+++
T Consensus 86 lRr~vG-MVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARal 164 (253)
T COG1117 86 LRRRVG-MVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARAL 164 (253)
T ss_pred HHHHhe-eeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHH
Confidence 123444 4555542 3356677652111 1 13567888899999999 99999999
Q ss_pred cCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEE
Q 004609 429 VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF 493 (742)
Q Consensus 429 ~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~ 493 (742)
+.+|++|||||||+.|||.+...|.+ ++..|++ .-|+++|||++. -++.+|....|..|.++-
T Consensus 165 Av~PeVlLmDEPtSALDPIsT~kIEe-Li~eLk~-~yTIviVTHnmqQAaRvSD~taFf~~G~LvE 228 (253)
T COG1117 165 AVKPEVLLMDEPTSALDPISTLKIEE-LITELKK-KYTIVIVTHNMQQAARVSDYTAFFYLGELVE 228 (253)
T ss_pred hcCCcEEEecCcccccCchhHHHHHH-HHHHHHh-ccEEEEEeCCHHHHHHHhHhhhhhcccEEEE
Confidence 99999999999999999999999998 6666775 589999999987 667899999999997753
|
|
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.9e-25 Score=223.64 Aligned_cols=154 Identities=19% Similarity=0.228 Sum_probs=120.7
Q ss_pred EeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh-----------------------hhhce
Q 004609 329 VGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------------SKAGL 382 (742)
Q Consensus 329 ~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m-----------------------aq~G~ 382 (742)
++|+++.|+++.+ ++||++.+| ++++|+||||+|||||||++ |++.+- .+...
T Consensus 1 i~~l~~~~~~~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~ 79 (206)
T TIGR03608 1 LKNISKKFGDKIILDDLNLTIEKG-KMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLG 79 (206)
T ss_pred CcceEEEECCEEEEeceEEEEeCC-cEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCee
Confidence 3688999987655 999999999 99999999999999999999 555320 11223
Q ss_pred eecCCCCC--CchH---------------------HHHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEEEEc
Q 004609 383 YLPAKNHP--RLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLID 438 (742)
Q Consensus 383 ~vPa~~~~--~i~~---------------------~d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLD 438 (742)
|+|+.... ..++ +..++..+|+.+..++.+.+||+||+ |+.++++++.+|+++|||
T Consensus 80 ~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~llllD 159 (206)
T TIGR03608 80 YLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILAD 159 (206)
T ss_pred EEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 45544311 1111 22346667777788899999999999 899999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhccccc
Q 004609 439 EIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDT 484 (742)
Q Consensus 439 Ep~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~l~~~a~~~~ 484 (742)
|||+|||+.....+...+ ..+.+.+.++|++||+.++..+|+++.
T Consensus 160 EPt~~LD~~~~~~l~~~l-~~~~~~~~tii~~sh~~~~~~~~d~i~ 204 (206)
T TIGR03608 160 EPTGSLDPKNRDEVLDLL-LELNDEGKTIIIVTHDPEVAKQADRVI 204 (206)
T ss_pred CCcCCCCHHHHHHHHHHH-HHHHhcCCEEEEEeCCHHHHhhcCEEE
Confidence 999999999999999854 455555889999999988666777654
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.9e-25 Score=241.63 Aligned_cols=168 Identities=17% Similarity=0.192 Sum_probs=136.4
Q ss_pred cEEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh-----------------hhhceeec
Q 004609 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------SKAGLYLP 385 (742)
Q Consensus 326 ~l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m-----------------aq~G~~vP 385 (742)
.++++|+++.|++..+ ++||++.+| ++++|+||||||||||||+| |+..+- .+...++|
T Consensus 14 ~L~l~~l~~~~~~~~~l~~vsl~i~~G-e~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vf 92 (375)
T PRK09452 14 LVELRGISKSFDGKEVISNLDLTINNG-EFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNTVF 92 (375)
T ss_pred eEEEEEEEEEECCeEEEeeeEEEEeCC-CEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEe
Confidence 5789999999987665 899999999 99999999999999999999 555331 11123555
Q ss_pred CCCC--CCchHH---------------------HHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEEEEcCCC
Q 004609 386 AKNH--PRLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIG 441 (742)
Q Consensus 386 a~~~--~~i~~~---------------------d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLDEp~ 441 (742)
++.. ..++++ +.++..+|+.+.+++.+++|||||+ |++++++++.+|+++|||||+
T Consensus 93 Q~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~ 172 (375)
T PRK09452 93 QSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESL 172 (375)
T ss_pred cCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 5531 122222 2345667888889999999999999 999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 442 SGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 442 ~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
+|||+..+..|...+.+...+.+.|+|++|||.+ ...++|++..+.+|.+...
T Consensus 173 s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~ 226 (375)
T PRK09452 173 SALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQD 226 (375)
T ss_pred CcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999998555544556899999999987 5679999999999998754
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.3e-25 Score=239.60 Aligned_cols=167 Identities=16% Similarity=0.206 Sum_probs=134.9
Q ss_pred EEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh-----------------hhhceeecC
Q 004609 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------SKAGLYLPA 386 (742)
Q Consensus 327 l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m-----------------aq~G~~vPa 386 (742)
+.++|+++.|++..+ ++||++.+| ++++|+||||||||||||+| |+..+- .+...|+|+
T Consensus 3 L~i~~l~~~~~~~~~l~~isl~i~~G-e~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q 81 (353)
T PRK10851 3 IEIANIKKSFGRTQVLNDISLDIPSG-QMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQ 81 (353)
T ss_pred EEEEEEEEEeCCeEEEEEeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEec
Confidence 678999999987655 999999999 99999999999999999999 555321 112235666
Q ss_pred CCC--CCchH-------------------------HHHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEEEEc
Q 004609 387 KNH--PRLPW-------------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLID 438 (742)
Q Consensus 387 ~~~--~~i~~-------------------------~d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLD 438 (742)
+.. ..+++ +..++..+++.+..++++.+|||||+ |++++++++.+|+++|||
T Consensus 82 ~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llLLD 161 (353)
T PRK10851 82 HYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLD 161 (353)
T ss_pred CcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 531 11111 22346667888888999999999999 999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 439 EIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 439 Ep~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
|||+|||+..+..+...+.+...+.+.|+|++|||.+ ...+||++..+.+|.+...
T Consensus 162 EP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~ 218 (353)
T PRK10851 162 EPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQA 218 (353)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999998555544445889999999987 5779999999999998754
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.6e-24 Score=228.41 Aligned_cols=168 Identities=20% Similarity=0.252 Sum_probs=134.6
Q ss_pred cEEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh-------------------------
Q 004609 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------------- 377 (742)
Q Consensus 326 ~l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m------------------------- 377 (742)
.++++||++.|++..+ ++||++.+| ++++|+|||||||||||++| |++.+-
T Consensus 4 ~l~~~nl~~~~~~~~il~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (262)
T PRK09984 4 IIRVEKLAKTFNQHQALHAVDLNIHHG-EMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIR 82 (262)
T ss_pred EEEEeeEEEEeCCeEEEecceEEEcCC-cEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHH
Confidence 4678999999987665 999999999 99999999999999999999 665421
Q ss_pred --hhhceeecCCCCC--CchH-----------------------------HHHHHHHcCCccccccccccchHHHH-HHH
Q 004609 378 --SKAGLYLPAKNHP--RLPW-----------------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIV 423 (742)
Q Consensus 378 --aq~G~~vPa~~~~--~i~~-----------------------------~d~il~~ig~~~~~~~~lstfSgg~k-rl~ 423 (742)
.+...|+|+.... .+++ +..++..+|+.+.+++.+.+||+||+ |+.
T Consensus 83 ~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ 162 (262)
T PRK09984 83 KSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVA 162 (262)
T ss_pred HHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHH
Confidence 0112466665311 1111 12345557777778899999999999 899
Q ss_pred HHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 424 DILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 424 ~~~~l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
++++++.+|++|||||||+|||+.....+...+.+...+.|.++|++||+.+ +..+|++++.+.+|.+..+
T Consensus 163 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~~~ 234 (262)
T PRK09984 163 IARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYD 234 (262)
T ss_pred HHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999555443345889999999988 5789999999999988654
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.9e-25 Score=233.42 Aligned_cols=166 Identities=17% Similarity=0.111 Sum_probs=132.2
Q ss_pred EEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh-----------------------hhhc
Q 004609 328 TVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------------SKAG 381 (742)
Q Consensus 328 ~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m-----------------------aq~G 381 (742)
.+.|+++.|++..+ ++||++.+| ++++|+||||||||||||+| |++.+- .+..
T Consensus 26 ~~~~~~~~~~~~~il~~is~~i~~G-e~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i 104 (269)
T cd03294 26 SKEEILKKTGQTVGVNDVSLDVREG-EIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKI 104 (269)
T ss_pred hhhhhhhhcCCceEeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcE
Confidence 35688899988766 999999999 99999999999999999999 665320 1123
Q ss_pred eeecCCCCC--CchH---------------------HHHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEEEE
Q 004609 382 LYLPAKNHP--RLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLI 437 (742)
Q Consensus 382 ~~vPa~~~~--~i~~---------------------~d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLL 437 (742)
.|+|+.... .+++ ++.++..+|+.+.+++.+++|||||+ |++++++++.+|++|||
T Consensus 105 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~illL 184 (269)
T cd03294 105 SMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLM 184 (269)
T ss_pred EEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 466665311 1111 22345667888888999999999999 89999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 438 DEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 438 DEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
||||+|||+.....+...+.+...+.|.++|++||+.+ +..+|++++.+.+|.+...
T Consensus 185 DEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~ 242 (269)
T cd03294 185 DEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQV 242 (269)
T ss_pred cCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEe
Confidence 99999999999999998555443445789999999987 5679999999999988643
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=99.92 E-value=1e-24 Score=226.86 Aligned_cols=166 Identities=23% Similarity=0.281 Sum_probs=128.1
Q ss_pred EEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhh--hh-------------------hhhh-c
Q 004609 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLA--SL-------------------MSKA-G 381 (742)
Q Consensus 327 l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli--~~-------------------maq~-G 381 (742)
++++||++.|++..+ ++||++.+| ++++|+||||||||||||+| |+. .+ ..+. .
T Consensus 1 l~~~~l~~~~~~~~~l~~isl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 79 (243)
T TIGR01978 1 LKIKDLHVSVEDKEILKGVNLTVKKG-EIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGL 79 (243)
T ss_pred CeEeeEEEEECCEEEEeccceEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccce
Confidence 357899999987665 999999999 99999999999999999999 663 11 0112 2
Q ss_pred eeecCCCCC--CchH----------------------------HHHHHHHcCCcc-ccccccc-cchHHHH-HHHHHHHh
Q 004609 382 LYLPAKNHP--RLPW----------------------------FDLILADIGDHQ-SLEQNLS-TFSGHIS-RIVDILEL 428 (742)
Q Consensus 382 ~~vPa~~~~--~i~~----------------------------~d~il~~ig~~~-~~~~~ls-tfSgg~k-rl~~~~~l 428 (742)
.|+|+.... .++. +..++..+|+.+ ..++.+. .|||||+ |+++++++
T Consensus 80 ~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al 159 (243)
T TIGR01978 80 FLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMA 159 (243)
T ss_pred EeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHH
Confidence 356665311 0101 122344556653 4567776 5999999 89999999
Q ss_pred cCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChhh-hhh-cccccceecceEEEe
Q 004609 429 VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL-SCL-KDKDTRFENAATEFS 494 (742)
Q Consensus 429 ~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~l-~~~-a~~~~~i~~g~~~~~ 494 (742)
+.+|+++||||||+|||+.....+...+ ..+.+.+.|+|++||+.+. ..+ |+++..+.+|.+..+
T Consensus 160 ~~~p~llllDEPt~~LD~~~~~~l~~~l-~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~ 226 (243)
T TIGR01978 160 LLEPKLAILDEIDSGLDIDALKIVAEGI-NRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKS 226 (243)
T ss_pred hcCCCEEEecCCcccCCHHHHHHHHHHH-HHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEe
Confidence 9999999999999999999999999844 4556668899999999885 456 799999999988654
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.4e-25 Score=233.54 Aligned_cols=166 Identities=17% Similarity=0.155 Sum_probs=132.7
Q ss_pred EEEeeeeeecCCc------ee-cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh---------------------
Q 004609 327 MTVGSLSKGISDF------PV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------- 377 (742)
Q Consensus 327 l~~~nl~~~y~~~------~v-~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m--------------------- 377 (742)
++++|+++.|+.. .+ ++||++.+| ++++|+||||||||||||+| |++.+-
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~G-e~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 80 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKG-SYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIK 80 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCC-CEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHH
Confidence 5789999999631 23 999999999 99999999999999999999 665321
Q ss_pred --hhhceeecCCCC---CCchH---------------------HHHHHHHcCCc-cccccccccchHHHH-HHHHHHHhc
Q 004609 378 --SKAGLYLPAKNH---PRLPW---------------------FDLILADIGDH-QSLEQNLSTFSGHIS-RIVDILELV 429 (742)
Q Consensus 378 --aq~G~~vPa~~~---~~i~~---------------------~d~il~~ig~~-~~~~~~lstfSgg~k-rl~~~~~l~ 429 (742)
.+...|+|+... ...++ +..++..+|+. +..++.+.+|||||+ |++++++++
T Consensus 81 ~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~ 160 (288)
T PRK13643 81 PVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILA 160 (288)
T ss_pred HHHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHH
Confidence 112346666531 11122 22345566775 466899999999999 899999999
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 430 SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 430 ~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
.+|++|||||||+|||+.....+.. ++..+++.|.|+|++|||++ +..+|++++.+.+|.+.++
T Consensus 161 ~~p~illLDEPt~gLD~~~~~~l~~-~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~ 225 (288)
T PRK13643 161 MEPEVLVLDEPTAGLDPKARIEMMQ-LFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISC 225 (288)
T ss_pred hCCCEEEEECCccCCCHHHHHHHHH-HHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999998 56667666889999999988 5579999999999999875
|
|
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.5e-25 Score=222.52 Aligned_cols=154 Identities=22% Similarity=0.238 Sum_probs=119.2
Q ss_pred EEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh------------------hhhceeec
Q 004609 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------SKAGLYLP 385 (742)
Q Consensus 327 l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m------------------aq~G~~vP 385 (742)
++++|+++.|++..+ ++||++.+| ++++|+||||+||||||++| |+..+- .+.-.|+|
T Consensus 2 l~~~~l~~~~~~~~~l~~vs~~i~~G-e~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~~ 80 (204)
T PRK13538 2 LEARNLACERDERILFSGLSFTLNAG-ELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLG 80 (204)
T ss_pred eEEEEEEEEECCEEEEecceEEECCC-cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEEeC
Confidence 578899999987655 999999999 99999999999999999999 554321 01112344
Q ss_pred CCCC--CCchH------------------HHHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCC
Q 004609 386 AKNH--PRLPW------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGT 444 (742)
Q Consensus 386 a~~~--~~i~~------------------~d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLDEp~~gl 444 (742)
+... ..+++ ++.++..+|+.+..++.+++|||||+ |+.++++++.+|+++||||||+||
T Consensus 81 ~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~L 160 (204)
T PRK13538 81 HQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAI 160 (204)
T ss_pred CccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccC
Confidence 3321 01111 23456667887778899999999999 899999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEecChhhh-hhccc
Q 004609 445 DPSEGVALATSILQYLRDRVGLAVVTTHYADLS-CLKDK 482 (742)
Q Consensus 445 Dp~~~~aL~~all~~l~~~~~~vlitTH~~~l~-~~a~~ 482 (742)
|+.....+.. ++..+.+.+.|+|++||+.+.. .+.++
T Consensus 161 D~~~~~~l~~-~l~~~~~~~~tiii~sh~~~~i~~~~~~ 198 (204)
T PRK13538 161 DKQGVARLEA-LLAQHAEQGGMVILTTHQDLPVASDKVR 198 (204)
T ss_pred CHHHHHHHHH-HHHHHHHCCCEEEEEecChhhhccCCce
Confidence 9999999998 4445556688999999998744 44443
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-24 Score=231.75 Aligned_cols=167 Identities=16% Similarity=0.129 Sum_probs=132.8
Q ss_pred cEEEeeeeeecC-Ccee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh-------------------hhhce
Q 004609 326 EMTVGSLSKGIS-DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAGL 382 (742)
Q Consensus 326 ~l~~~nl~~~y~-~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m-------------------aq~G~ 382 (742)
.+.++|++++|+ ...+ ++||++.+| ++++|+||||||||||||+| |+..+- .+...
T Consensus 3 ~l~~~~l~~~~~~~~~~l~~vsl~i~~G-e~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (277)
T PRK13652 3 LIETRDLCYSYSGSKEALNNINFIAPRN-SRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVG 81 (277)
T ss_pred eEEEEEEEEEeCCCCceeeEeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheE
Confidence 367899999995 4434 999999999 99999999999999999999 554321 11124
Q ss_pred eecCCCC---CCchH---------------------HHHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEEEE
Q 004609 383 YLPAKNH---PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLI 437 (742)
Q Consensus 383 ~vPa~~~---~~i~~---------------------~d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLL 437 (742)
|+|+... ...++ ++.++..+|+.+.+++.+..|||||+ |+.++++++.+|++|||
T Consensus 82 ~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~llil 161 (277)
T PRK13652 82 LVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVL 161 (277)
T ss_pred EEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 6666531 11121 23345666777888999999999999 89999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEecChhh-hhhcccccceecceEEEe
Q 004609 438 DEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYADL-SCLKDKDTRFENAATEFS 494 (742)
Q Consensus 438 DEp~~glDp~~~~aL~~all~~l~~-~~~~vlitTH~~~l-~~~a~~~~~i~~g~~~~~ 494 (742)
||||+|||+.....+...+. .+.+ .+.|+|++||+.+. ..+|+++..+.+|.+..+
T Consensus 162 DEPt~gLD~~~~~~l~~~l~-~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~ 219 (277)
T PRK13652 162 DEPTAGLDPQGVKELIDFLN-DLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAY 219 (277)
T ss_pred eCCcccCCHHHHHHHHHHHH-HHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEE
Confidence 99999999999999998444 4554 48899999999884 579999999999998765
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-24 Score=233.04 Aligned_cols=167 Identities=16% Similarity=0.134 Sum_probs=133.0
Q ss_pred EEEeeeeeecCC-----cee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh---------------------
Q 004609 327 MTVGSLSKGISD-----FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------- 377 (742)
Q Consensus 327 l~~~nl~~~y~~-----~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m--------------------- 377 (742)
++++||++.|++ ..+ ++||+|.+| ++++|+||||||||||||+| |++.+-
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSG-SYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLK 81 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCC-CEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 678999999964 234 999999999 99999999999999999999 665321
Q ss_pred --hhhceeecCCCC---CCchH---------------------HHHHHHHcCCc-cccccccccchHHHH-HHHHHHHhc
Q 004609 378 --SKAGLYLPAKNH---PRLPW---------------------FDLILADIGDH-QSLEQNLSTFSGHIS-RIVDILELV 429 (742)
Q Consensus 378 --aq~G~~vPa~~~---~~i~~---------------------~d~il~~ig~~-~~~~~~lstfSgg~k-rl~~~~~l~ 429 (742)
.+...|+|+... ...++ ++.++..+|+. ...++++++|||||+ |+.++++++
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~ 161 (290)
T PRK13634 82 PLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLA 161 (290)
T ss_pred HHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHH
Confidence 112346777531 11122 22345567775 556889999999999 899999999
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEecChh-hhhhcccccceecceEEEec
Q 004609 430 SRESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFSL 495 (742)
Q Consensus 430 ~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~-~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~~ 495 (742)
.+|++|||||||+|||+.....+... +..+.+ .|.|||++||+.+ +..+|+++..+.+|.+..+.
T Consensus 162 ~~P~llllDEPt~~LD~~~~~~l~~~-L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g 228 (290)
T PRK13634 162 MEPEVLVLDEPTAGLDPKGRKEMMEM-FYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQG 228 (290)
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEC
Confidence 99999999999999999999999984 455554 5889999999988 56799999999999987653
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-24 Score=227.86 Aligned_cols=167 Identities=17% Similarity=0.175 Sum_probs=131.9
Q ss_pred EEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh--------------------------
Q 004609 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------------- 377 (742)
Q Consensus 327 l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m-------------------------- 377 (742)
++++||++.|++..+ ++||++.+| ++++|+||||||||||||+| |+..+-
T Consensus 1 i~~~~l~~~~~~~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ 79 (252)
T TIGR03005 1 VRFSDVTKRFGILTVLDGLNFSVAAG-EKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADE 79 (252)
T ss_pred CEEEEEEEEeCCeeEEeeeeEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccch
Confidence 357899999987555 999999999 99999999999999999999 554320
Q ss_pred ------hhhceeecCCCCC--CchH----------------------HHHHHHHcCCccccccccccchHHHH-HHHHHH
Q 004609 378 ------SKAGLYLPAKNHP--RLPW----------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDIL 426 (742)
Q Consensus 378 ------aq~G~~vPa~~~~--~i~~----------------------~d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~ 426 (742)
.+...++|+.... ..++ +..++..+|+.+.+++.+++|||||+ |+++++
T Consensus 80 ~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~lar 159 (252)
T TIGR03005 80 KHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIAR 159 (252)
T ss_pred hHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHH
Confidence 1123355554311 1111 12345566777778889999999999 899999
Q ss_pred HhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 427 ELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 427 ~l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
+++.+|+++||||||+|||+.....+...+.+...+.+.++|++||+.+ +..+++++..+.+|.+...
T Consensus 160 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 228 (252)
T TIGR03005 160 ALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQ 228 (252)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEe
Confidence 9999999999999999999999999998555544445889999999987 4578999999999988644
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.6e-24 Score=243.28 Aligned_cols=168 Identities=20% Similarity=0.256 Sum_probs=132.7
Q ss_pred CCcEEEeeeeeecCCc-ee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhhhhhc----------eeecCCCC
Q 004609 324 NSEMTVGSLSKGISDF-PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMSKAG----------LYLPAKNH 389 (742)
Q Consensus 324 ~~~l~~~nl~~~y~~~-~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~maq~G----------~~vPa~~~ 389 (742)
+.++.++|++++|++. .+ ++||.+.+| +.++|+||||+|||||||+| |.+... .| .|.+++..
T Consensus 319 ~~vl~~~~~~~~y~~~~~l~~~~s~~i~~g-~riaiiG~NG~GKSTLlk~l~g~~~~~--~G~v~~g~~v~igyf~Q~~~ 395 (530)
T COG0488 319 KLVLEFENVSKGYDGGRLLLKDLSFRIDRG-DRIAIVGPNGAGKSTLLKLLAGELGPL--SGTVKVGETVKIGYFDQHRD 395 (530)
T ss_pred CeeEEEeccccccCCCceeecCceEEecCC-CEEEEECCCCCCHHHHHHHHhhhcccC--CceEEeCCceEEEEEEehhh
Confidence 4578999999999664 55 999999999 99999999999999999999 444332 12 23333321
Q ss_pred C---CchH---------------HHHHHHHcCCc-cccccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHH
Q 004609 390 P---RLPW---------------FDLILADIGDH-QSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEG 449 (742)
Q Consensus 390 ~---~i~~---------------~d~il~~ig~~-~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLDEp~~glDp~~~ 449 (742)
. ..++ +...+.+++.. +...+++++|||||+ |+.+++.++.+|++||||||||+||+.+.
T Consensus 396 ~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~ 475 (530)
T COG0488 396 ELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESL 475 (530)
T ss_pred hcCccCcHHHHHHhhCccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHH
Confidence 0 0012 23345666643 556899999999999 99999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEecCccc
Q 004609 450 VALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFSLETLR 499 (742)
Q Consensus 450 ~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~~~~l~ 499 (742)
.+|..++.+| .+|||+||||.. +..+|++++.+.+ .+....+.+.
T Consensus 476 ~aLe~aL~~f----~Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y~ 521 (530)
T COG0488 476 EALEEALLDF----EGTVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYE 521 (530)
T ss_pred HHHHHHHHhC----CCeEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCCHH
Confidence 9999988888 899999999998 6679999999988 5555544433
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-24 Score=222.02 Aligned_cols=161 Identities=21% Similarity=0.251 Sum_probs=127.8
Q ss_pred eeeeecCCceecccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh-----------------------hhhceeecC
Q 004609 331 SLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------------SKAGLYLPA 386 (742)
Q Consensus 331 nl~~~y~~~~v~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m-----------------------aq~G~~vPa 386 (742)
||+|.|++..+++||++.+ ++++|+||||+||||||+++ |++.+- .+...|+|+
T Consensus 5 ~l~~~~~~~~~~vsl~i~~--e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q 82 (214)
T cd03297 5 DIEKRLPDFTLKIDFDLNE--EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQ 82 (214)
T ss_pred eeeEecCCeeeCceEEEcc--eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEEEec
Confidence 8999999877799999987 79999999999999999999 665321 111235565
Q ss_pred CCCC--CchH-------------------HHHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCC
Q 004609 387 KNHP--RLPW-------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGT 444 (742)
Q Consensus 387 ~~~~--~i~~-------------------~d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLDEp~~gl 444 (742)
.... .+++ +..++..+|+....++.+++|||||+ |+.++++++.+|+++||||||+||
T Consensus 83 ~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~L 162 (214)
T cd03297 83 QYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSAL 162 (214)
T ss_pred CCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 5321 1111 22345667777778899999999999 899999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEE
Q 004609 445 DPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF 493 (742)
Q Consensus 445 Dp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~ 493 (742)
|+.....+...+.+...+.|.|+|++||+.+ +..++++...+.+|.+..
T Consensus 163 D~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 212 (214)
T cd03297 163 DRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQY 212 (214)
T ss_pred CHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEe
Confidence 9999999998555443344889999999987 567899999999998754
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-24 Score=231.37 Aligned_cols=168 Identities=18% Similarity=0.158 Sum_probs=134.4
Q ss_pred CcEEEeeeeeecCC--cee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh----------------------
Q 004609 325 SEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM---------------------- 377 (742)
Q Consensus 325 ~~l~~~nl~~~y~~--~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m---------------------- 377 (742)
..++++|+++.|++ ..+ ++||++.+| ++++|+||||||||||||+| |+..+-
T Consensus 4 ~~l~i~~l~~~~~~~~~~~l~~v~l~i~~G-e~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~ 82 (282)
T PRK13640 4 NIVEFKHVSFTYPDSKKPALNDISFSIPRG-SWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDI 82 (282)
T ss_pred ceEEEEEEEEEcCCCCccceeeEEEEEcCC-CEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHH
Confidence 46889999999964 233 999999999 99999999999999999999 655321
Q ss_pred hhhceeecCCCC---CCchH---------------------HHHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCC
Q 004609 378 SKAGLYLPAKNH---PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRE 432 (742)
Q Consensus 378 aq~G~~vPa~~~---~~i~~---------------------~d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~ 432 (742)
.+...|+|+... ....+ ++.++..+|+.+..++.+++||+||+ |++++++++.+|
T Consensus 83 ~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P 162 (282)
T PRK13640 83 REKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEP 162 (282)
T ss_pred HhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCC
Confidence 111245665431 11111 22346667888888999999999999 899999999999
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhhcccccceecceEEEe
Q 004609 433 SLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 433 ~LlLLDEp~~glDp~~~~aL~~all~~l~~-~~~~vlitTH~~~l~~~a~~~~~i~~g~~~~~ 494 (742)
++|||||||+|||+.....+...+. .+.+ .|.++|++||+.+...+|++++.+.+|.+..+
T Consensus 163 ~llllDEPt~gLD~~~~~~l~~~l~-~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~ 224 (282)
T PRK13640 163 KIIILDESTSMLDPAGKEQILKLIR-KLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQ 224 (282)
T ss_pred CEEEEECCcccCCHHHHHHHHHHHH-HHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999998554 4544 48899999999986678999999999998765
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-24 Score=224.47 Aligned_cols=161 Identities=23% Similarity=0.220 Sum_probs=126.9
Q ss_pred cEEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh-------------------hhhcee
Q 004609 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAGLY 383 (742)
Q Consensus 326 ~l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m-------------------aq~G~~ 383 (742)
.+.++||++.|+++.+ ++||++.+| ++++|+|||||||||||++| |+..+- .+...|
T Consensus 7 ~i~~~~l~~~~~~~~il~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 85 (225)
T PRK10247 7 LLQLQNVGYLAGDAKILNNISFSLRAG-EFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSY 85 (225)
T ss_pred eEEEeccEEeeCCceeeeccEEEEcCC-CEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccEE
Confidence 5788999999987665 999999999 99999999999999999999 654321 112345
Q ss_pred ecCCCCC-CchH-------------------HHHHHHHcCCc-cccccccccchHHHH-HHHHHHHhcCCCcEEEEcCCC
Q 004609 384 LPAKNHP-RLPW-------------------FDLILADIGDH-QSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIG 441 (742)
Q Consensus 384 vPa~~~~-~i~~-------------------~d~il~~ig~~-~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLDEp~ 441 (742)
+|+.... ..++ +..++..+|+. ...++++++||+||+ |+.++++++.+|+++||||||
T Consensus 86 ~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt 165 (225)
T PRK10247 86 CAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEIT 165 (225)
T ss_pred EecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 6655310 0111 23456667775 467899999999999 899999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhccccccee
Q 004609 442 SGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFE 487 (742)
Q Consensus 442 ~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~l~~~a~~~~~i~ 487 (742)
+|||+.....+...+.+...+.+.++|++||+.+....|++.+.+.
T Consensus 166 ~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~ 211 (225)
T PRK10247 166 SALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQ 211 (225)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEe
Confidence 9999999999998655544455889999999988656788887775
|
|
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-24 Score=222.66 Aligned_cols=161 Identities=23% Similarity=0.232 Sum_probs=127.0
Q ss_pred CcEEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh----------------hhhceeec
Q 004609 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM----------------SKAGLYLP 385 (742)
Q Consensus 325 ~~l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m----------------aq~G~~vP 385 (742)
..+.++|++++|+++.+ ++||++.+| ++++|+||||+|||||||+| |+..+- .+...|+|
T Consensus 10 ~~l~~~~l~~~~~~~~il~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~~~ 88 (214)
T PRK13543 10 PLLAAHALAFSRNEEPVFGPLDFHVDAG-EALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLG 88 (214)
T ss_pred ceEEEeeEEEecCCceeeecceEEECCC-CEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEEee
Confidence 35789999999987655 999999999 99999999999999999999 554321 11123555
Q ss_pred CCCCC--CchHH------------------HHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCC
Q 004609 386 AKNHP--RLPWF------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGT 444 (742)
Q Consensus 386 a~~~~--~i~~~------------------d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLDEp~~gl 444 (742)
+.... .++.. ..++..+++....++.+.+||+||+ |++++++++.+|+++||||||+||
T Consensus 89 q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~L 168 (214)
T PRK13543 89 HLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANL 168 (214)
T ss_pred cCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 54311 11222 2345566777777899999999999 899999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhccccccee
Q 004609 445 DPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFE 487 (742)
Q Consensus 445 Dp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~ 487 (742)
|+.....+.. ++..+.+.+.++|++||+.+ +..++++.+.+.
T Consensus 169 D~~~~~~l~~-~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~ 211 (214)
T PRK13543 169 DLEGITLVNR-MISAHLRGGGAALVTTHGAYAAPPVRTRMLTLE 211 (214)
T ss_pred CHHHHHHHHH-HHHHHHhCCCEEEEEecChhhhhhhcceEEEEe
Confidence 9999999988 55555666889999999987 667888876654
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.7e-24 Score=231.52 Aligned_cols=169 Identities=12% Similarity=0.100 Sum_probs=132.5
Q ss_pred CcEEEeeeeeecCCc-----ee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh-------------------
Q 004609 325 SEMTVGSLSKGISDF-----PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------- 377 (742)
Q Consensus 325 ~~l~~~nl~~~y~~~-----~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m------------------- 377 (742)
+.+.++|+++.|+++ .+ ++||++.+| ++++|+||||||||||||+| |++.+-
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~ 83 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKN-KVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIK 83 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccc
Confidence 468899999999763 24 999999999 99999999999999999999 665321
Q ss_pred -----hhhceeecCCCCC---CchH---------------------HHHHHHHcCCc-cccccccccchHHHH-HHHHHH
Q 004609 378 -----SKAGLYLPAKNHP---RLPW---------------------FDLILADIGDH-QSLEQNLSTFSGHIS-RIVDIL 426 (742)
Q Consensus 378 -----aq~G~~vPa~~~~---~i~~---------------------~d~il~~ig~~-~~~~~~lstfSgg~k-rl~~~~ 426 (742)
.+...|+|+.... ..++ ++.++..+++. +..++.+++|||||+ |+.+++
T Consensus 84 ~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~lar 163 (289)
T PRK13645 84 EVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAG 163 (289)
T ss_pred cHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHH
Confidence 0112466665310 1111 12345556663 567888999999999 899999
Q ss_pred HhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 427 ELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 427 ~l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
+++.+|+++||||||+|||+.....+...+.+...+.+.++|++||+.+ +..+|+++..+.+|.+..+
T Consensus 164 al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~ 232 (289)
T PRK13645 164 IIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISI 232 (289)
T ss_pred HHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999998555443445889999999987 5679999999999988654
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.6e-24 Score=230.14 Aligned_cols=166 Identities=19% Similarity=0.189 Sum_probs=132.9
Q ss_pred EEEeeeeeecCC-cee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh---------------------hhhc
Q 004609 327 MTVGSLSKGISD-FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM---------------------SKAG 381 (742)
Q Consensus 327 l~~~nl~~~y~~-~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m---------------------aq~G 381 (742)
+.++||++.|++ ..+ ++||++.+| ++++|+||||||||||||+| |++.+- .+..
T Consensus 2 l~~~~l~~~~~~~~~~l~~vsl~i~~G-e~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 80 (275)
T PRK13639 2 LETRDLKYSYPDGTEALKGINFKAEKG-EMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTV 80 (275)
T ss_pred EEEEEEEEEeCCCCeeeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhhe
Confidence 578999999963 434 999999999 99999999999999999999 554321 1223
Q ss_pred eeecCCCC---CCchH---------------------HHHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEEE
Q 004609 382 LYLPAKNH---PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVL 436 (742)
Q Consensus 382 ~~vPa~~~---~~i~~---------------------~d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlL 436 (742)
.|+|++.. ...++ +..++..+|+.+..++.+++|||||+ |+.++++++.+|+++|
T Consensus 81 ~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~lll 160 (275)
T PRK13639 81 GIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIV 160 (275)
T ss_pred EEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 46676531 11122 22345666777778899999999999 8999999999999999
Q ss_pred EcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 437 IDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 437 LDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
|||||+|||+.....+...+ ..+.+.+.|+|++||+.+ +..+|+++..+.+|.+..+
T Consensus 161 lDEPt~gLD~~~~~~l~~~l-~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~ 218 (275)
T PRK13639 161 LDEPTSGLDPMGASQIMKLL-YDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKE 218 (275)
T ss_pred EeCCCcCCCHHHHHHHHHHH-HHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999955 455556889999999988 4568999999999988765
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-24 Score=238.37 Aligned_cols=166 Identities=19% Similarity=0.264 Sum_probs=133.4
Q ss_pred EEEeeeeeecCCceecccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh-----------------------hhhce
Q 004609 327 MTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------------SKAGL 382 (742)
Q Consensus 327 l~~~nl~~~y~~~~v~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m-----------------------aq~G~ 382 (742)
+++ ||++.|++..+++||++.+| ++++|+||||||||||||+| |++.+- .+...
T Consensus 2 l~~-~l~k~~~~~~~~vsl~i~~G-e~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~ 79 (352)
T PRK11144 2 LEL-NFKQQLGDLCLTVNLTLPAQ-GITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIG 79 (352)
T ss_pred eEE-EEEEEeCCEEEEEEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEE
Confidence 345 89999988667999999999 99999999999999999999 665321 01123
Q ss_pred eecCCCC--CCchH---------------HHHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCC
Q 004609 383 YLPAKNH--PRLPW---------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGT 444 (742)
Q Consensus 383 ~vPa~~~--~~i~~---------------~d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLDEp~~gl 444 (742)
|+|+... ..+++ ++.++..+|+.+.+++.+++|||||+ |++++++++.+|+++||||||+||
T Consensus 80 ~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~L 159 (352)
T PRK11144 80 YVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASL 159 (352)
T ss_pred EEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccC
Confidence 5555531 11222 23456777888888999999999999 999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 445 DPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 445 Dp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
|+.....+...+.+...+.+.|+|++|||.+ +..+|+++..+.+|.+...
T Consensus 160 D~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~ 210 (352)
T PRK11144 160 DLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAF 210 (352)
T ss_pred CHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEe
Confidence 9999999998555444444889999999987 6689999999999988654
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.7e-24 Score=230.90 Aligned_cols=167 Identities=17% Similarity=0.157 Sum_probs=134.5
Q ss_pred cEEEeeeeeecC-Ccee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhh---------------------hhhh
Q 004609 326 EMTVGSLSKGIS-DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL---------------------MSKA 380 (742)
Q Consensus 326 ~l~~~nl~~~y~-~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~---------------------maq~ 380 (742)
.+.++|+++.|+ +..+ ++||++.+| ++++|+||||+|||||||+| |++.+ +...
T Consensus 5 ~l~~~~l~~~~~~~~~~l~~vs~~i~~G-e~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ 83 (283)
T PRK13636 5 ILKVEELNYNYSDGTHALKGININIKKG-EVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRES 83 (283)
T ss_pred eEEEEeEEEEeCCCCeeeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhh
Confidence 478999999996 4444 999999999 99999999999999999999 66532 1122
Q ss_pred ceeecCCCC---CCchH---------------------HHHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEE
Q 004609 381 GLYLPAKNH---PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLV 435 (742)
Q Consensus 381 G~~vPa~~~---~~i~~---------------------~d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~Ll 435 (742)
..|+|+... ...++ ++.++..+|+....++.+..|||||+ |+.++++++.+|++|
T Consensus 84 ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~lL 163 (283)
T PRK13636 84 VGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVL 163 (283)
T ss_pred EEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 347777541 11122 23345667787788999999999999 899999999999999
Q ss_pred EEcCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEecChhh-hhhcccccceecceEEEe
Q 004609 436 LIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYADL-SCLKDKDTRFENAATEFS 494 (742)
Q Consensus 436 LLDEp~~glDp~~~~aL~~all~~l~~-~~~~vlitTH~~~l-~~~a~~~~~i~~g~~~~~ 494 (742)
||||||+|||+.....+...+ ..+.+ .|.|+|++||+.+. ..+|++...+.+|.+.++
T Consensus 164 ilDEPt~gLD~~~~~~l~~~l-~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~ 223 (283)
T PRK13636 164 VLDEPTAGLDPMGVSEIMKLL-VEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQ 223 (283)
T ss_pred EEeCCccCCCHHHHHHHHHHH-HHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999844 44554 48899999999885 569999999999998765
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-24 Score=240.00 Aligned_cols=169 Identities=14% Similarity=0.158 Sum_probs=137.9
Q ss_pred CcEEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh-----------------hhhceee
Q 004609 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------SKAGLYL 384 (742)
Q Consensus 325 ~~l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m-----------------aq~G~~v 384 (742)
..++++|+++.|++..+ ++||++.+| ++++|+||||||||||||+| |+..+- .+...|+
T Consensus 18 ~~l~l~~v~~~~~~~~~l~~vsl~i~~G-e~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v 96 (377)
T PRK11607 18 PLLEIRNLTKSFDGQHAVDDVSLTIYKG-EIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMM 96 (377)
T ss_pred ceEEEEeEEEEECCEEEEeeeEEEEcCC-CEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEE
Confidence 35889999999987555 899999999 99999999999999999999 554321 1112356
Q ss_pred cCCCC--CCchHH---------------------HHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEEEEcCC
Q 004609 385 PAKNH--PRLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEI 440 (742)
Q Consensus 385 Pa~~~--~~i~~~---------------------d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLDEp 440 (742)
|++.. ..+++. ..++..+|+.+..++.+++|||||+ |++++++++.+|++||||||
T Consensus 97 fQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP 176 (377)
T PRK11607 97 FQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEP 176 (377)
T ss_pred eCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 66541 112222 2345667888888999999999999 99999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 441 GSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 441 ~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
++|||+..+..+...+.+.+.+.+.|+|++|||.+ ...++|++..+.+|++...
T Consensus 177 ~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~ 231 (377)
T PRK11607 177 MGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQI 231 (377)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEE
Confidence 99999999999998677666666899999999987 5689999999999988754
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.8e-24 Score=224.05 Aligned_cols=166 Identities=15% Similarity=0.143 Sum_probs=132.4
Q ss_pred EEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh-----------------hhhceeecCC
Q 004609 328 TVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------SKAGLYLPAK 387 (742)
Q Consensus 328 ~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m-----------------aq~G~~vPa~ 387 (742)
.++|+++.|+++.+ +++|++.+| ++++|+||||+|||||||+| |++.+- .+.-.++|+.
T Consensus 2 ~~~~l~~~~~~~~il~~i~~~i~~G-e~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~ 80 (232)
T cd03300 2 ELENVSKFYGGFVALDGVSLDIKEG-EFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQN 80 (232)
T ss_pred EEEeEEEEeCCeeeeccceEEECCC-CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEecc
Confidence 57899999987666 999999999 99999999999999999999 554331 0112355554
Q ss_pred CCC--CchH---------------------HHHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCC
Q 004609 388 NHP--RLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSG 443 (742)
Q Consensus 388 ~~~--~i~~---------------------~d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLDEp~~g 443 (742)
... .+++ ++.++..+|+.+.+++.+..||+||+ |++++++++.+|+++||||||+|
T Consensus 81 ~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~g 160 (232)
T cd03300 81 YALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGA 160 (232)
T ss_pred cccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 321 1111 12345667888888999999999999 89999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 444 TDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 444 lDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
||+.....+...+.+...+.|.|+|++||+.+ +..+++++..+.+|.+...
T Consensus 161 LD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~ 212 (232)
T cd03300 161 LDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQI 212 (232)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEec
Confidence 99999999998555443334889999999987 5688999999999988654
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.8e-24 Score=226.01 Aligned_cols=165 Identities=19% Similarity=0.259 Sum_probs=130.1
Q ss_pred EEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh--------------------------
Q 004609 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------------- 377 (742)
Q Consensus 327 l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m-------------------------- 377 (742)
++++||++.|++..+ ++||++.+| ++++|+||||||||||||+| |++.+-
T Consensus 2 l~~~~l~~~~~~~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~ 80 (247)
T TIGR00972 2 IEIENLNLFYGEKEALKNINLDIPKN-QVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVEL 80 (247)
T ss_pred EEEEEEEEEECCeeeecceeEEECCC-CEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHH
Confidence 578999999987555 999999999 99999999999999999999 665321
Q ss_pred hhhceeecCCCCC-CchHHH----------------------HHHHHcCCc----cccccccccchHHHH-HHHHHHHhc
Q 004609 378 SKAGLYLPAKNHP-RLPWFD----------------------LILADIGDH----QSLEQNLSTFSGHIS-RIVDILELV 429 (742)
Q Consensus 378 aq~G~~vPa~~~~-~i~~~d----------------------~il~~ig~~----~~~~~~lstfSgg~k-rl~~~~~l~ 429 (742)
.+...|+|+.... ..++++ .++..+|+. +.+++.+..|||||+ |++++++++
T Consensus 81 ~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~ 160 (247)
T TIGR00972 81 RRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALA 160 (247)
T ss_pred HhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHh
Confidence 0112355554311 012222 234455665 567888999999999 899999999
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 430 SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 430 ~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
.+|+++||||||+|||+.....+.. ++..+.+ +.|+|++||+.+ +..+|+++..+.+|.+...
T Consensus 161 ~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~-~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 224 (247)
T TIGR00972 161 VEPEVLLLDEPTSALDPIATGKIEE-LIQELKK-KYTIVIVTHNMQQAARISDRTAFFYDGELVEY 224 (247)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHh-cCeEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999998 4445555 489999999988 6679999999999988654
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.7e-24 Score=222.32 Aligned_cols=164 Identities=22% Similarity=0.308 Sum_probs=129.8
Q ss_pred EEEeeeeeecCC----cee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh----------------------
Q 004609 327 MTVGSLSKGISD----FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM---------------------- 377 (742)
Q Consensus 327 l~~~nl~~~y~~----~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m---------------------- 377 (742)
+.++|+++.|++ ..+ ++||++.+| ++++|+||||+|||||+++| |+..+-
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G-~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPG-EIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQL 80 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHH
Confidence 678899999974 334 999999999 99999999999999999999 554220
Q ss_pred hhhceeecCCCCC--Cch----------------------HHHHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCC
Q 004609 378 SKAGLYLPAKNHP--RLP----------------------WFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRE 432 (742)
Q Consensus 378 aq~G~~vPa~~~~--~i~----------------------~~d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~ 432 (742)
.+...|+|+.... .++ .+..++..+|+.+.+++.+.+||+||+ |+.++++++.+|
T Consensus 81 ~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p 160 (220)
T TIGR02982 81 RRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRP 160 (220)
T ss_pred HhheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCC
Confidence 1223455554310 011 133456667887888999999999999 899999999999
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcccccceecceE
Q 004609 433 SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAAT 491 (742)
Q Consensus 433 ~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~l~~~a~~~~~i~~g~~ 491 (742)
+++||||||+|||+.....+...+.+...+.+.++|++||+.++..+|+++..+.+|.+
T Consensus 161 ~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 161 KLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHMEDGKL 219 (220)
T ss_pred CEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence 99999999999999999999985544433458999999999987789999998888754
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.9e-24 Score=230.14 Aligned_cols=166 Identities=20% Similarity=0.166 Sum_probs=130.8
Q ss_pred EEEeeeeeecCC-----cee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh---------------------
Q 004609 327 MTVGSLSKGISD-----FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------- 377 (742)
Q Consensus 327 l~~~nl~~~y~~-----~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m--------------------- 377 (742)
+.++||++.|++ .++ ++||++.+| ++++|+||||||||||||+| |++.+-
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~G-e~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDG-SYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIK 81 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHH
Confidence 578999999964 234 999999999 99999999999999999999 665320
Q ss_pred --hhhceeecCCCC---CCchHH---------------------HHHHHHcCCc-cccccccccchHHHH-HHHHHHHhc
Q 004609 378 --SKAGLYLPAKNH---PRLPWF---------------------DLILADIGDH-QSLEQNLSTFSGHIS-RIVDILELV 429 (742)
Q Consensus 378 --aq~G~~vPa~~~---~~i~~~---------------------d~il~~ig~~-~~~~~~lstfSgg~k-rl~~~~~l~ 429 (742)
.+...|+|+... ...++. +.++..+|+. ...++.+++|||||+ |+.++++++
T Consensus 82 ~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~ 161 (280)
T PRK13649 82 QIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILA 161 (280)
T ss_pred HHHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHH
Confidence 112346676531 111221 2234556776 356889999999999 899999999
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 430 SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 430 ~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
.+|+++||||||+|||+.....+...+ ..+++.+.|+|++||+.+ +..+|++++.+.+|.+...
T Consensus 162 ~~p~lllLDEPt~~LD~~~~~~l~~~l-~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 226 (280)
T PRK13649 162 MEPKILVLDEPTAGLDPKGRKELMTLF-KKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLS 226 (280)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHH-HHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999854 455556889999999988 5578999999999988654
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.7e-24 Score=228.99 Aligned_cols=168 Identities=17% Similarity=0.147 Sum_probs=130.3
Q ss_pred cEEEeeeeeecCC---------cee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh----------------
Q 004609 326 EMTVGSLSKGISD---------FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM---------------- 377 (742)
Q Consensus 326 ~l~~~nl~~~y~~---------~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m---------------- 377 (742)
.++++||++.|++ ..+ ++||++.+| ++++|+||||||||||||+| |++.+-
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~G-e~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~ 82 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREG-QTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDY 82 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCC-CEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCch
Confidence 4688999999962 234 999999999 99999999999999999999 665321
Q ss_pred ---hhhceeecCCCC----CCchH----------------------HHHHHHHcCCc-cccccccccchHHHH-HHHHHH
Q 004609 378 ---SKAGLYLPAKNH----PRLPW----------------------FDLILADIGDH-QSLEQNLSTFSGHIS-RIVDIL 426 (742)
Q Consensus 378 ---aq~G~~vPa~~~----~~i~~----------------------~d~il~~ig~~-~~~~~~lstfSgg~k-rl~~~~ 426 (742)
.+...|+|+... ..+.+ ++.++..+|+. ...++.+++||+||+ |+++++
T Consensus 83 ~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~lar 162 (267)
T PRK15112 83 SYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLAR 162 (267)
T ss_pred hhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHH
Confidence 112345666531 00010 12345667773 556778899999999 899999
Q ss_pred HhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 427 ELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 427 ~l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
+++.+|++|||||||+|||+.....+...+.+...+.|.|+|++||+.+ +..+|+++..+.+|.+..+
T Consensus 163 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~ 231 (267)
T PRK15112 163 ALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVER 231 (267)
T ss_pred HHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEec
Confidence 9999999999999999999999999998555543345889999999987 5568999999999988654
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.1e-24 Score=228.56 Aligned_cols=167 Identities=14% Similarity=0.081 Sum_probs=132.5
Q ss_pred cEEEeeeeeecCCc--ee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh-------------------hhhc
Q 004609 326 EMTVGSLSKGISDF--PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAG 381 (742)
Q Consensus 326 ~l~~~nl~~~y~~~--~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m-------------------aq~G 381 (742)
.+.++|+++.|++. .+ ++||++.+| ++++|+|||||||||||++| |++.+- .+..
T Consensus 7 ~l~i~~l~~~~~~~~~~~l~~isl~i~~G-e~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 85 (269)
T PRK13648 7 IIVFKNVSFQYQSDASFTLKDVSFNIPKG-QWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHI 85 (269)
T ss_pred eEEEEEEEEEcCCCCCcceeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 57899999999752 23 999999999 99999999999999999999 665321 1122
Q ss_pred eeecCCCC---CCchH---------------------HHHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEEE
Q 004609 382 LYLPAKNH---PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVL 436 (742)
Q Consensus 382 ~~vPa~~~---~~i~~---------------------~d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlL 436 (742)
.|+|+... ....+ +..++..+|+.+..++.+..||+||+ |++++++++.+|+++|
T Consensus 86 ~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lll 165 (269)
T PRK13648 86 GIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVII 165 (269)
T ss_pred eEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 45665531 00011 22345667777788899999999999 8999999999999999
Q ss_pred EcCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhhcccccceecceEEEe
Q 004609 437 IDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 437 LDEp~~glDp~~~~aL~~all~~l~~-~~~~vlitTH~~~l~~~a~~~~~i~~g~~~~~ 494 (742)
|||||+|||+.....+...+. .+.+ .|.|+|++||+.+....|+++..+.+|.+..+
T Consensus 166 LDEPt~~LD~~~~~~l~~~L~-~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~ 223 (269)
T PRK13648 166 LDEATSMLDPDARQNLLDLVR-KVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKE 223 (269)
T ss_pred EeCCcccCCHHHHHHHHHHHH-HHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEe
Confidence 999999999999999999554 4554 47899999999885556999999999988755
|
|
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.1e-24 Score=213.78 Aligned_cols=152 Identities=24% Similarity=0.343 Sum_probs=112.6
Q ss_pred EEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhHHhhhhhhhhceeecCCCCCCch-----HH-HHHH
Q 004609 328 TVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLP-----WF-DLIL 399 (742)
Q Consensus 328 ~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~lGli~~maq~G~~vPa~~~~~i~-----~~-d~il 399 (742)
.++|+++.|++..+ ++||++.+| ++++|+||||+|||||||++ +|...|..|...+. .. ....
T Consensus 2 ~~~~l~~~~~~~~~l~~~~~~i~~G-e~~~i~G~nGsGKStLl~~l--------~G~~~~~~G~i~~~g~~~~~~~~~~~ 72 (173)
T cd03230 2 EVRNLSKRYGKKTALDDISLTVEKG-EIYGLLGPNGAGKTTLIKII--------LGLLKPDSGEIKVLGKDIKKEPEEVK 72 (173)
T ss_pred EEEEEEEEECCeeeeeeeEEEEcCC-cEEEEECCCCCCHHHHHHHH--------hCCCCCCCeEEEECCEEcccchHhhh
Confidence 57899999976555 999999999 99999999999999999999 55444444421110 00 0011
Q ss_pred HHcCC-cc--------ccccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEE
Q 004609 400 ADIGD-HQ--------SLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVV 469 (742)
Q Consensus 400 ~~ig~-~~--------~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vli 469 (742)
..++. .+ .+...+. ||+||+ |+.++++++.+|+++||||||+|||+.....+.+.+ ..+.++|.++|+
T Consensus 73 ~~i~~~~q~~~~~~~~tv~~~~~-LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l-~~~~~~g~tiii 150 (173)
T cd03230 73 RRIGYLPEEPSLYENLTVRENLK-LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELL-RELKKEGKTILL 150 (173)
T ss_pred ccEEEEecCCccccCCcHHHHhh-cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHH-HHHHHCCCEEEE
Confidence 11110 00 1111111 999999 899999999999999999999999999999999954 455555889999
Q ss_pred EecChh-hhhhcccccceecce
Q 004609 470 TTHYAD-LSCLKDKDTRFENAA 490 (742)
Q Consensus 470 tTH~~~-l~~~a~~~~~i~~g~ 490 (742)
+||+.+ +..++++...+.+|.
T Consensus 151 ~th~~~~~~~~~d~i~~l~~g~ 172 (173)
T cd03230 151 SSHILEEAERLCDRVAILNNGR 172 (173)
T ss_pred ECCCHHHHHHhCCEEEEEeCCC
Confidence 999987 555899998888764
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.6e-24 Score=232.20 Aligned_cols=168 Identities=16% Similarity=0.152 Sum_probs=133.7
Q ss_pred CcEEEeeeeeecCCc-----ee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh-------------------
Q 004609 325 SEMTVGSLSKGISDF-----PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------- 377 (742)
Q Consensus 325 ~~l~~~nl~~~y~~~-----~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m------------------- 377 (742)
..++++|+++.|++. .+ ++||++.+| ++++|+||||||||||||+| |+..+-
T Consensus 20 ~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~G-e~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~ 98 (320)
T PRK13631 20 IILRVKNLYCVFDEKQENELVALNNISYTFEKN-KIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHE 98 (320)
T ss_pred ceEEEEeEEEEeCCCCcccccceeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccccc
Confidence 468999999999642 23 999999999 99999999999999999999 554220
Q ss_pred ----------------hhhceeecCCCC---CCchH---------------------HHHHHHHcCCc-cccccccccch
Q 004609 378 ----------------SKAGLYLPAKNH---PRLPW---------------------FDLILADIGDH-QSLEQNLSTFS 416 (742)
Q Consensus 378 ----------------aq~G~~vPa~~~---~~i~~---------------------~d~il~~ig~~-~~~~~~lstfS 416 (742)
.+...++|+... ...++ +..++..+|+. +..++.+.+||
T Consensus 99 ~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LS 178 (320)
T PRK13631 99 LITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLS 178 (320)
T ss_pred ccccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCC
Confidence 111235666531 01111 22345566775 56788999999
Q ss_pred HHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 417 GHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 417 gg~k-rl~~~~~l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
|||+ |++++++++.+|++|||||||+|||+.....+.. ++..+.++|.|+|++||+.+ +..+|++++.+.+|.+..+
T Consensus 179 gGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~-~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G~i~~~ 257 (320)
T PRK13631 179 GGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQ-LILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKT 257 (320)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHH-HHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999 8999999999999999999999999999999998 55556666889999999988 5689999999999998765
|
|
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.8e-24 Score=214.23 Aligned_cols=151 Identities=23% Similarity=0.287 Sum_probs=114.1
Q ss_pred EEeeeeeecCC--cee--cccccccCCceEEEEEeCCCCCcchHHhhHHhhhhhhhhceeecCCCCCCchH-------HH
Q 004609 328 TVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPW-------FD 396 (742)
Q Consensus 328 ~~~nl~~~y~~--~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~lGli~~maq~G~~vPa~~~~~i~~-------~d 396 (742)
+++|+++.|++ ..+ ++||++.+| ++++|+||||+||||||++| +|...|..|...+.. ..
T Consensus 2 ~~~~l~~~~~~~~~~~l~~~~~~i~~G-e~~~i~G~nGsGKStLl~~l--------~G~~~~~~G~i~~~g~~~~~~~~~ 72 (173)
T cd03246 2 EVENVSFRYPGAEPPVLRNVSFSIEPG-ESLAIIGPSGSGKSTLARLI--------LGLLRPTSGRVRLDGADISQWDPN 72 (173)
T ss_pred EEEEEEEEcCCCCCcceeeeEEEECCC-CEEEEECCCCCCHHHHHHHH--------HhccCCCCCeEEECCEEcccCCHH
Confidence 57899999975 233 999999999 99999999999999999999 565555555221110 00
Q ss_pred HHHHHcCC---c-----cccccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEE
Q 004609 397 LILADIGD---H-----QSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLA 467 (742)
Q Consensus 397 ~il~~ig~---~-----~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~v 467 (742)
.+...++. . ..+..++ ||+||+ |+.++++++.+|+++||||||+|||+.....+...+ ..+.+.+.++
T Consensus 73 ~~~~~i~~~~q~~~~~~~tv~~~l--LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l-~~~~~~~~ti 149 (173)
T cd03246 73 ELGDHVGYLPQDDELFSGSIAENI--LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAI-AALKAAGATR 149 (173)
T ss_pred HHHhheEEECCCCccccCcHHHHC--cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHH-HHHHhCCCEE
Confidence 11111110 0 0111122 999999 899999999999999999999999999999999844 5556668899
Q ss_pred EEEecChhhhhhcccccceecce
Q 004609 468 VVTTHYADLSCLKDKDTRFENAA 490 (742)
Q Consensus 468 litTH~~~l~~~a~~~~~i~~g~ 490 (742)
|++||+.+...+|++.+.+.+|.
T Consensus 150 i~~sh~~~~~~~~d~v~~l~~G~ 172 (173)
T cd03246 150 IVIAHRPETLASADRILVLEDGR 172 (173)
T ss_pred EEEeCCHHHHHhCCEEEEEECCC
Confidence 99999988667899888887764
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.3e-24 Score=228.58 Aligned_cols=167 Identities=20% Similarity=0.196 Sum_probs=132.2
Q ss_pred cEEEeeeeeecC--Ccee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhh-------------------hhhhc
Q 004609 326 EMTVGSLSKGIS--DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKAG 381 (742)
Q Consensus 326 ~l~~~nl~~~y~--~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~-------------------maq~G 381 (742)
.+.++|+++.|+ ++.+ ++||++.+| ++++|+|||||||||||++| |+..+ +.+..
T Consensus 7 ~l~~~nl~~~~~~~~~~il~~isl~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i 85 (271)
T PRK13632 7 MIKVENVSFSYPNSENNALKNVSFEINEG-EYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKI 85 (271)
T ss_pred EEEEEeEEEEcCCCCccceeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcce
Confidence 568899999995 3444 999999999 99999999999999999999 66532 11123
Q ss_pred eeecCCCC---CCchHH---------------------HHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEEE
Q 004609 382 LYLPAKNH---PRLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVL 436 (742)
Q Consensus 382 ~~vPa~~~---~~i~~~---------------------d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlL 436 (742)
.|+|+... ...++. ..++..+|+...+++.+.+|||||+ |+.++++++.+|+++|
T Consensus 86 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lll 165 (271)
T PRK13632 86 GIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIII 165 (271)
T ss_pred EEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 46666531 111222 2345566777788999999999999 8999999999999999
Q ss_pred EcCCCCCCCHHHHHHHHHHHHHHHhcC-CcEEEEEecChhhhhhcccccceecceEEEe
Q 004609 437 IDEIGSGTDPSEGVALATSILQYLRDR-VGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 437 LDEp~~glDp~~~~aL~~all~~l~~~-~~~vlitTH~~~l~~~a~~~~~i~~g~~~~~ 494 (742)
|||||+|||+.....+...+. .+.+. +.|+|++||+.+...+|+++..+.+|.+...
T Consensus 166 LDEP~~gLD~~~~~~l~~~l~-~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~ 223 (271)
T PRK13632 166 FDESTSMLDPKGKREIKKIMV-DLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQ 223 (271)
T ss_pred EeCCcccCCHHHHHHHHHHHH-HHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEe
Confidence 999999999999999998554 45544 5899999999886568999999999988654
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.3e-24 Score=229.57 Aligned_cols=167 Identities=17% Similarity=0.148 Sum_probs=133.7
Q ss_pred cEEEeeeeeecCC------cee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh-------------------
Q 004609 326 EMTVGSLSKGISD------FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------- 377 (742)
Q Consensus 326 ~l~~~nl~~~y~~------~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m------------------- 377 (742)
.+.++|+++.|++ +.+ ++||++.+| ++++|+|||||||||||++| |++.+-
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~ 82 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKG-EFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWD 82 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHH
Confidence 4678999999963 234 999999999 99999999999999999999 665321
Q ss_pred -hhhceeecCCCC---CCchH---------------------HHHHHHHcCCccccccccccchHHHH-HHHHHHHhcCC
Q 004609 378 -SKAGLYLPAKNH---PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSR 431 (742)
Q Consensus 378 -aq~G~~vPa~~~---~~i~~---------------------~d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~ 431 (742)
.+...|+|+... ....+ ++.++..+|+.+..++.+.+|||||+ |+.++++++.+
T Consensus 83 ~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~ 162 (280)
T PRK13633 83 IRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMR 162 (280)
T ss_pred HhhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcC
Confidence 122346666531 00011 23346667888888999999999999 89999999999
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhhcccccceecceEEEe
Q 004609 432 ESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 432 ~~LlLLDEp~~glDp~~~~aL~~all~~l~~-~~~~vlitTH~~~l~~~a~~~~~i~~g~~~~~ 494 (742)
|+++||||||+|||+.....+.. ++..+.+ .|.|+|++||+.+....|++...+.+|.+..+
T Consensus 163 p~llllDEPt~gLD~~~~~~l~~-~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~ 225 (280)
T PRK13633 163 PECIIFDEPTAMLDPSGRREVVN-TIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVME 225 (280)
T ss_pred CCEEEEeCCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEe
Confidence 99999999999999999999998 5555554 58899999999886556999999999988755
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.8e-24 Score=248.89 Aligned_cols=167 Identities=20% Similarity=0.255 Sum_probs=136.4
Q ss_pred cEEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh-------------------h-hhce
Q 004609 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------S-KAGL 382 (742)
Q Consensus 326 ~l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m-------------------a-q~G~ 382 (742)
.++++|+++.|+++.+ ++||++.+| ++++|+||||||||||||+| |++.+- . ....
T Consensus 11 ~l~~~~l~~~~~~~~il~~vsl~i~~G-e~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 89 (510)
T PRK15439 11 LLCARSISKQYSGVEVLKGIDFTLHAG-EVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIY 89 (510)
T ss_pred eEEEEeEEEEeCCceeeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEE
Confidence 5789999999987665 999999999 99999999999999999999 665321 0 1123
Q ss_pred eecCCCC--CCchH-----------------HHHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCC
Q 004609 383 YLPAKNH--PRLPW-----------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGS 442 (742)
Q Consensus 383 ~vPa~~~--~~i~~-----------------~d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLDEp~~ 442 (742)
|+|+... ..+++ +..++..+|+.+..++.+++|||||+ |+.++++++.+|++|||||||+
T Consensus 90 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~ 169 (510)
T PRK15439 90 LVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTA 169 (510)
T ss_pred EEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCC
Confidence 6666531 11122 23356677888888999999999999 8999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 443 GTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 443 glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
|||+.....+.. ++..+.+.|.++|++|||.+ +..+|++++.+.+|.+..+
T Consensus 170 ~LD~~~~~~l~~-~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~ 221 (510)
T PRK15439 170 SLTPAETERLFS-RIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALS 221 (510)
T ss_pred CCCHHHHHHHHH-HHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 999999999998 55556666889999999987 5679999999999988654
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.5e-24 Score=230.03 Aligned_cols=166 Identities=15% Similarity=0.195 Sum_probs=132.3
Q ss_pred EEEeeeeeecCC-----cee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh---------------------
Q 004609 327 MTVGSLSKGISD-----FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------- 377 (742)
Q Consensus 327 l~~~nl~~~y~~-----~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m--------------------- 377 (742)
++++||++.|++ ..+ ++||+|.+| ++++|+||||||||||||+| |++.+-
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQG-KYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEECCCCccccCceeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 678999999963 134 999999999 99999999999999999999 655321
Q ss_pred --hhhceeecCCCC-CCc--hH---------------------HHHHHHHcCCc-cccccccccchHHHH-HHHHHHHhc
Q 004609 378 --SKAGLYLPAKNH-PRL--PW---------------------FDLILADIGDH-QSLEQNLSTFSGHIS-RIVDILELV 429 (742)
Q Consensus 378 --aq~G~~vPa~~~-~~i--~~---------------------~d~il~~ig~~-~~~~~~lstfSgg~k-rl~~~~~l~ 429 (742)
.+...|+|+... ..+ ++ +..++..+|+. +..++.+.+|||||+ |++++++++
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~ 161 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILA 161 (286)
T ss_pred HHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHH
Confidence 112246777531 011 11 22345667776 567889999999999 899999999
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 430 SRESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 430 ~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~-~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
.+|++|||||||+|||+.....+.. ++..+.+ .|.|+|++||+.+ +..+|+++..+.+|.+...
T Consensus 162 ~~p~illlDEPt~~LD~~~~~~l~~-~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~ 227 (286)
T PRK13646 162 MNPDIIVLDEPTAGLDPQSKRQVMR-LLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQ 227 (286)
T ss_pred hCCCEEEEECCcccCCHHHHHHHHH-HHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999998 5555554 5889999999988 5578999999999998755
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.7e-24 Score=221.88 Aligned_cols=166 Identities=15% Similarity=0.157 Sum_probs=125.2
Q ss_pred cEEEeeeeeecCC-cee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh-------------------hhhce
Q 004609 326 EMTVGSLSKGISD-FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAGL 382 (742)
Q Consensus 326 ~l~~~nl~~~y~~-~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m-------------------aq~G~ 382 (742)
.++++|+++.|++ ..+ ++||++.+| ++++|+||||+|||||||+| |++.+- .....
T Consensus 2 ~l~~~~l~~~~~~~~~~l~~isl~i~~G-~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (229)
T cd03254 2 EIEFENVNFSYDEKKPVLKDINFSIKPG-ETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIG 80 (229)
T ss_pred eEEEEEEEEecCCCCccccceEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEE
Confidence 4789999999974 334 999999999 99999999999999999999 555321 11224
Q ss_pred eecCCCCC-CchHHHHH---------------HHHcCC-----------ccccccccccchHHHH-HHHHHHHhcCCCcE
Q 004609 383 YLPAKNHP-RLPWFDLI---------------LADIGD-----------HQSLEQNLSTFSGHIS-RIVDILELVSRESL 434 (742)
Q Consensus 383 ~vPa~~~~-~i~~~d~i---------------l~~ig~-----------~~~~~~~lstfSgg~k-rl~~~~~l~~~~~L 434 (742)
|+|+.... ..++.+++ +..++. ...+.+.+..||+||+ |+.++++++.+|++
T Consensus 81 ~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~l 160 (229)
T cd03254 81 VVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKI 160 (229)
T ss_pred EecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 55554310 01112211 122222 2233456789999999 89999999999999
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcccccceecceEEEe
Q 004609 435 VLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 435 lLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~l~~~a~~~~~i~~g~~~~~ 494 (742)
+||||||+|||+.....+...+ ..+.+ +.++|++||+.+....|++++.+.+|.+...
T Consensus 161 lllDEP~~~LD~~~~~~l~~~l-~~~~~-~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~ 218 (229)
T cd03254 161 LILDEATSNIDTETEKLIQEAL-EKLMK-GRTSIIIAHRLSTIKNADKILVLDDGKIIEE 218 (229)
T ss_pred EEEeCccccCCHHHHHHHHHHH-HHhcC-CCEEEEEecCHHHHhhCCEEEEEeCCeEEEe
Confidence 9999999999999999999854 45554 7899999999886667999999999988654
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.9e-24 Score=225.08 Aligned_cols=166 Identities=19% Similarity=0.240 Sum_probs=130.3
Q ss_pred cEEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhh--------------------------
Q 004609 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------------- 376 (742)
Q Consensus 326 ~l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~-------------------------- 376 (742)
.+.++|+++.|+++.+ ++||++.+| ++++|+|||||||||||++| |+..+
T Consensus 12 ~l~~~~l~~~~~~~~il~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 90 (258)
T PRK14268 12 QIKVENLNLWYGEKQALKNVSMQIPKN-SVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVE 90 (258)
T ss_pred eEEEeeeEEEeCCeeeeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHH
Confidence 5789999999987655 999999999 99999999999999999999 66431
Q ss_pred hhhhceeecCCCCC-CchHHH---------------------HHHHHcCC----ccccccccccchHHHH-HHHHHHHhc
Q 004609 377 MSKAGLYLPAKNHP-RLPWFD---------------------LILADIGD----HQSLEQNLSTFSGHIS-RIVDILELV 429 (742)
Q Consensus 377 maq~G~~vPa~~~~-~i~~~d---------------------~il~~ig~----~~~~~~~lstfSgg~k-rl~~~~~l~ 429 (742)
..+...|+|+.... ..++.+ .++..+|. .+.+++.+.+|||||+ |++++++++
T Consensus 91 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~ 170 (258)
T PRK14268 91 LRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLA 170 (258)
T ss_pred HhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHH
Confidence 01123456655311 112222 23444454 2345788999999999 899999999
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 430 SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 430 ~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
.+|+++||||||+|+|+.....+.. ++..+.+ +.|+|++||+.+ +..+|+++..+.+|.+...
T Consensus 171 ~~p~llllDEPt~~LD~~~~~~l~~-~l~~l~~-~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 234 (258)
T PRK14268 171 VKPKIILFDEPTSALDPISTARIED-LIMNLKK-DYTIVIVTHNMQQAARISDYTGFFLMGELIEF 234 (258)
T ss_pred cCCCEEEEeCCCcccCHHHHHHHHH-HHHHHhh-CCEEEEEECCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999998 4445554 789999999987 5578999999999988654
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.5e-24 Score=223.76 Aligned_cols=166 Identities=18% Similarity=0.216 Sum_probs=133.1
Q ss_pred EEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh-----------------hhhceeecC
Q 004609 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------SKAGLYLPA 386 (742)
Q Consensus 327 l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m-----------------aq~G~~vPa 386 (742)
++++|+++.|++..+ ++||++.+| ++++|+||||+|||||||+| |++.+- .+...|+|+
T Consensus 1 i~i~~l~~~~~~~~il~~is~~i~~G-e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q 79 (237)
T TIGR00968 1 IEIANISKRFGSFQALDDVNLEVPTG-SLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQ 79 (237)
T ss_pred CEEEEEEEEECCeeeeeeEEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEec
Confidence 357899999987666 999999999 99999999999999999999 554321 112245665
Q ss_pred CCCC--CchH---------------------HHHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCC
Q 004609 387 KNHP--RLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGS 442 (742)
Q Consensus 387 ~~~~--~i~~---------------------~d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLDEp~~ 442 (742)
.... .+++ ++.++..+++.+..++.+..||+||+ |+.++++++.+|+++||||||+
T Consensus 80 ~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~ 159 (237)
T TIGR00968 80 HYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFG 159 (237)
T ss_pred ChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 4311 1111 23456667777788899999999999 8999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcC-CcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 443 GTDPSEGVALATSILQYLRDR-VGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 443 glDp~~~~aL~~all~~l~~~-~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
|+|+.....+...+. .+.+. ++|+|++||+.+ +..+|+++..+.+|.+...
T Consensus 160 ~LD~~~~~~~~~~l~-~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~ 212 (237)
T TIGR00968 160 ALDAKVRKELRSWLR-KLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQI 212 (237)
T ss_pred cCCHHHHHHHHHHHH-HHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEe
Confidence 999999999998554 45554 789999999988 5788999999999998654
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.9e-24 Score=226.99 Aligned_cols=168 Identities=17% Similarity=0.177 Sum_probs=131.7
Q ss_pred cEEEeeeeeecCC---------cee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh----------------
Q 004609 326 EMTVGSLSKGISD---------FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM---------------- 377 (742)
Q Consensus 326 ~l~~~nl~~~y~~---------~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m---------------- 377 (742)
.+.++||++.|++ +.+ ++||++.+| ++++|+|||||||||||++| |+..+-
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~ 80 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEG-ETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDR 80 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCH
Confidence 3678999999952 334 999999999 99999999999999999999 665320
Q ss_pred ------hhhceeecCCCC----CCchH----------------------HHHHHHHcCCc-cccccccccchHHHH-HHH
Q 004609 378 ------SKAGLYLPAKNH----PRLPW----------------------FDLILADIGDH-QSLEQNLSTFSGHIS-RIV 423 (742)
Q Consensus 378 ------aq~G~~vPa~~~----~~i~~----------------------~d~il~~ig~~-~~~~~~lstfSgg~k-rl~ 423 (742)
.+...|+|+... ..+++ +..++..+|+. ...++.+..|||||+ |++
T Consensus 81 ~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~ 160 (265)
T TIGR02769 81 KQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRIN 160 (265)
T ss_pred HHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHH
Confidence 122356676531 11111 12345666775 567889999999999 899
Q ss_pred HHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChhh-hhhcccccceecceEEEe
Q 004609 424 DILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL-SCLKDKDTRFENAATEFS 494 (742)
Q Consensus 424 ~~~~l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~l-~~~a~~~~~i~~g~~~~~ 494 (742)
++++++.+|+++||||||+|||+.....+...+.+...+.|.|+|++||+.+. ..+|++++.+.+|.+...
T Consensus 161 laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 232 (265)
T TIGR02769 161 IARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEE 232 (265)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEE
Confidence 99999999999999999999999999999985555444458899999999884 468999999999988654
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.4e-24 Score=224.68 Aligned_cols=168 Identities=20% Similarity=0.200 Sum_probs=132.3
Q ss_pred cEEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhh----------------h---------
Q 004609 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL----------------M--------- 377 (742)
Q Consensus 326 ~l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~----------------m--------- 377 (742)
.+.++|+++.|++..+ ++||++.+| ++++|+|||||||||||+++ |+..+ .
T Consensus 3 ~l~~~~l~~~~~~~~~l~~isl~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (253)
T TIGR02323 3 LLQVSGLSKSYGGGKGCRDVSFDLYPG-EVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERR 81 (253)
T ss_pred eEEEeeeEEEeCCceEeecceEEEeCC-cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHH
Confidence 4678999999987555 999999999 99999999999999999999 55421 0
Q ss_pred ---hhhceeecCCCC----CCchH----------------------HHHHHHHcCCc-cccccccccchHHHH-HHHHHH
Q 004609 378 ---SKAGLYLPAKNH----PRLPW----------------------FDLILADIGDH-QSLEQNLSTFSGHIS-RIVDIL 426 (742)
Q Consensus 378 ---aq~G~~vPa~~~----~~i~~----------------------~d~il~~ig~~-~~~~~~lstfSgg~k-rl~~~~ 426 (742)
.+...|+|++.. ..+.. ++.++..+|.. ..+++.++.|||||+ |+++++
T Consensus 82 ~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~lar 161 (253)
T TIGR02323 82 RLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIAR 161 (253)
T ss_pred HhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHH
Confidence 011246666531 01111 12335666775 467889999999999 899999
Q ss_pred HhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChhh-hhhcccccceecceEEEe
Q 004609 427 ELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL-SCLKDKDTRFENAATEFS 494 (742)
Q Consensus 427 ~l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~l-~~~a~~~~~i~~g~~~~~ 494 (742)
+++.+|+++||||||+|||+.....+...+.+...+.+.++|++||+.+. ..+++++..+.+|.+...
T Consensus 162 al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~ 230 (253)
T TIGR02323 162 NLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVES 230 (253)
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEE
Confidence 99999999999999999999999999995555444458899999999884 558999999999988654
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.6e-24 Score=225.29 Aligned_cols=168 Identities=19% Similarity=0.170 Sum_probs=133.6
Q ss_pred cEEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhh----------------h---------
Q 004609 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL----------------M--------- 377 (742)
Q Consensus 326 ~l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~----------------m--------- 377 (742)
.+.++|+++.|+++.+ ++||++.+| ++++|+||||||||||||+| |++.+ +
T Consensus 6 ~l~~~~l~~~~~~~~il~~is~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~ 84 (258)
T PRK11701 6 LLSVRGLTKLYGPRKGCRDVSFDLYPG-EVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERR 84 (258)
T ss_pred eEEEeeeEEEcCCceeeeeeeEEEeCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHH
Confidence 5789999999987655 999999999 99999999999999999999 55421 1
Q ss_pred ---hhhceeecCCCC----CCchH----------------------HHHHHHHcCCc-cccccccccchHHHH-HHHHHH
Q 004609 378 ---SKAGLYLPAKNH----PRLPW----------------------FDLILADIGDH-QSLEQNLSTFSGHIS-RIVDIL 426 (742)
Q Consensus 378 ---aq~G~~vPa~~~----~~i~~----------------------~d~il~~ig~~-~~~~~~lstfSgg~k-rl~~~~ 426 (742)
.+...|+|++.. ..++. ++.++..++.. ..+++.+++|||||+ |+++++
T Consensus 85 ~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~lar 164 (258)
T PRK11701 85 RLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIAR 164 (258)
T ss_pred HHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHH
Confidence 112346776641 01111 12345567775 367899999999999 899999
Q ss_pred HhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChhhh-hhcccccceecceEEEe
Q 004609 427 ELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLS-CLKDKDTRFENAATEFS 494 (742)
Q Consensus 427 ~l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~l~-~~a~~~~~i~~g~~~~~ 494 (742)
+++.+|+++||||||+|||+.....+...+.+...+.|.++|++||+.+.. .+|++++.+.+|.+...
T Consensus 165 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~ 233 (258)
T PRK11701 165 NLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVES 233 (258)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEe
Confidence 999999999999999999999999999855544344588999999998854 68999999999988654
|
|
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.9e-24 Score=219.17 Aligned_cols=157 Identities=22% Similarity=0.273 Sum_probs=122.0
Q ss_pred EEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh------------------hhhceeec
Q 004609 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------SKAGLYLP 385 (742)
Q Consensus 327 l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m------------------aq~G~~vP 385 (742)
++++|+++.|+++.+ ++||++.+| ++++|+||||+||||||++| |+..+- .+...|+|
T Consensus 1 l~i~~l~~~~~~~~~l~~isl~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (201)
T cd03231 1 LEADELTCERDGRALFSGLSFTLAAG-EALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLG 79 (201)
T ss_pred CEEEEEEEEeCCceeeccceEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEec
Confidence 357899999987665 999999999 99999999999999999999 554321 11123455
Q ss_pred CCCCC--CchH---------------HHHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHH
Q 004609 386 AKNHP--RLPW---------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPS 447 (742)
Q Consensus 386 a~~~~--~i~~---------------~d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLDEp~~glDp~ 447 (742)
+.... ..++ ++.++..+|+....++.+.+|||||+ |++++++++.+|+++||||||+|||+.
T Consensus 80 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~ 159 (201)
T cd03231 80 HAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKA 159 (201)
T ss_pred cccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Confidence 44311 1122 33456677887778889999999999 899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccc
Q 004609 448 EGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTR 485 (742)
Q Consensus 448 ~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~ 485 (742)
....+...+. .+.+.+.++|++||+.. +..++++...
T Consensus 160 ~~~~l~~~l~-~~~~~g~tiii~sH~~~~~~~~~~~~~~ 197 (201)
T cd03231 160 GVARFAEAMA-GHCARGGMVVLTTHQDLGLSEAGARELD 197 (201)
T ss_pred HHHHHHHHHH-HHHhCCCEEEEEecCchhhhhccceeEe
Confidence 9999998554 45566889999999855 6666665543
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.4e-24 Score=246.61 Aligned_cols=166 Identities=17% Similarity=0.152 Sum_probs=134.6
Q ss_pred EEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh-------------------hhhceee
Q 004609 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAGLYL 384 (742)
Q Consensus 327 l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m-------------------aq~G~~v 384 (742)
++++|+++.|++..+ ++||++.+| ++++|+||||||||||||+| |++.+- .+.-.++
T Consensus 4 l~~~~l~~~~~~~~il~~vsl~i~~G-e~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~~ 82 (490)
T PRK10938 4 LQISQGTFRLSDTKTLQLPSLTLNAG-DSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDE 82 (490)
T ss_pred EEEEeEEEEcCCeeecccceEEEcCC-CEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhcee
Confidence 678999999987655 999999999 99999999999999999999 665320 0112245
Q ss_pred cCCCCC----------CchH-------------HHHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEEEEcCC
Q 004609 385 PAKNHP----------RLPW-------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEI 440 (742)
Q Consensus 385 Pa~~~~----------~i~~-------------~d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLDEp 440 (742)
|+.... .+.+ ++.++..+|+.+..++.+++|||||+ |++++++++.+|+++|||||
T Consensus 83 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEP 162 (490)
T PRK10938 83 WQRNNTDMLSPGEDDTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEP 162 (490)
T ss_pred ccCcchhhcccchhhccccHHHhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 543210 1111 23457778888888999999999999 99999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 441 GSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 441 ~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
|+||||.....+.. ++..+.+.|.|+|++||+.+ +..+|++++.+.+|.+.++
T Consensus 163 t~~LD~~~~~~l~~-~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~ 216 (490)
T PRK10938 163 FDGLDVASRQQLAE-LLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAET 216 (490)
T ss_pred cccCCHHHHHHHHH-HHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEe
Confidence 99999999999999 55556666889999999987 6689999999999988654
|
|
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.1e-24 Score=219.78 Aligned_cols=157 Identities=20% Similarity=0.209 Sum_probs=120.7
Q ss_pred EEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh----------------hhhceeecCC
Q 004609 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM----------------SKAGLYLPAK 387 (742)
Q Consensus 327 l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m----------------aq~G~~vPa~ 387 (742)
++++|+++.|++..+ ++||++.+| ++++|+||||+||||||++| |+..+- .....|+|+.
T Consensus 3 l~~~~l~~~~~~~~~l~~is~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 81 (207)
T PRK13539 3 LEGEDLACVRGGRVLFSGLSFTLAAG-EALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGHR 81 (207)
T ss_pred EEEEeEEEEECCeEEEeceEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEecCC
Confidence 678999999987655 999999999 99999999999999999999 554220 1112345433
Q ss_pred CCC--CchH-----------------HHHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHH
Q 004609 388 NHP--RLPW-----------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPS 447 (742)
Q Consensus 388 ~~~--~i~~-----------------~d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLDEp~~glDp~ 447 (742)
... ..++ +..++..+|+.+..++++++|||||+ |+.++++++.+|+++||||||+|+|+.
T Consensus 82 ~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~ 161 (207)
T PRK13539 82 NAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAA 161 (207)
T ss_pred CcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 211 1121 23345667777777889999999999 899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcccccce
Q 004609 448 EGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRF 486 (742)
Q Consensus 448 ~~~aL~~all~~l~~~~~~vlitTH~~~l~~~a~~~~~i 486 (742)
....+...+ ..+.+.+.++|++||+.+.... ++.+.+
T Consensus 162 ~~~~l~~~l-~~~~~~~~tiii~sH~~~~~~~-~~~~~~ 198 (207)
T PRK13539 162 AVALFAELI-RAHLAQGGIVIAATHIPLGLPG-ARELDL 198 (207)
T ss_pred HHHHHHHHH-HHHHHCCCEEEEEeCCchhhcc-CcEEee
Confidence 999999844 4455568999999999875443 555444
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.2e-24 Score=222.68 Aligned_cols=166 Identities=20% Similarity=0.234 Sum_probs=128.7
Q ss_pred cEEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhh-----h-----------h---------
Q 004609 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLAS-----L-----------M--------- 377 (742)
Q Consensus 326 ~l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~-----~-----------m--------- 377 (742)
.+.++|+++.|++..+ ++||++.+| ++++|+||||||||||||+| |+.. . +
T Consensus 6 ~l~~~~l~~~~~~~~il~~is~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 84 (253)
T PRK14242 6 KMEARGLSFFYGDFQALHDISLEFEQN-QVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVE 84 (253)
T ss_pred EEEEeeeEEEECCeeeecceeEEEeCC-CEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHH
Confidence 5789999999987655 999999999 99999999999999999999 6642 0 0
Q ss_pred -hhhceeecCCCCC-CchHHHHH----------------------HHHcCCc----cccccccccchHHHH-HHHHHHHh
Q 004609 378 -SKAGLYLPAKNHP-RLPWFDLI----------------------LADIGDH----QSLEQNLSTFSGHIS-RIVDILEL 428 (742)
Q Consensus 378 -aq~G~~vPa~~~~-~i~~~d~i----------------------l~~ig~~----~~~~~~lstfSgg~k-rl~~~~~l 428 (742)
.+...|+|+.... ..++.+++ +..+|+. ..+++.+.+|||||+ |+.+++++
T Consensus 85 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral 164 (253)
T PRK14242 85 LRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARAL 164 (253)
T ss_pred HhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHH
Confidence 1123456665311 11222222 2334442 235677899999999 89999999
Q ss_pred cCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 429 VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 429 ~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
+.+|+++||||||+|||+.....+...+. .+.+ +.|+|++||+.+ +..+|+++..+.+|.+..+
T Consensus 165 ~~~p~llllDEPt~~LD~~~~~~l~~~l~-~~~~-~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~ 229 (253)
T PRK14242 165 AVEPEVLLMDEPASALDPIATQKIEELIH-ELKA-RYTIIIVTHNMQQAARVSDVTAFFYMGKLIEV 229 (253)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHH-HHhc-CCeEEEEEecHHHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999998554 5554 689999999987 5679999999999988654
|
|
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.9e-24 Score=215.09 Aligned_cols=152 Identities=23% Similarity=0.339 Sum_probs=114.5
Q ss_pred EEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhHHhhhhhhhhceeecCCCCCCc-----hH----HH
Q 004609 328 TVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRL-----PW----FD 396 (742)
Q Consensus 328 ~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~lGli~~maq~G~~vPa~~~~~i-----~~----~d 396 (742)
.++|+++.|+++.+ ++||++.+| ++++|+||||+|||||||++ +|.+.|.+|...+ .- ..
T Consensus 2 ~~~~l~~~~~~~~~l~~i~~~i~~G-~~~~i~G~nGsGKSTLl~~l--------~G~~~~~~G~i~~~g~~~~~~~~~~~ 72 (178)
T cd03229 2 ELKNVSKRYGQKTVLNDVSLNIEAG-EIVALLGPSGSGKSTLLRCI--------AGLEEPDSGSILIDGEDLTDLEDELP 72 (178)
T ss_pred EEEEEEEEECCeEEEeeeeEEEcCC-CEEEEECCCCCCHHHHHHHH--------hCCCCCCceEEEECCEEccccchhHH
Confidence 57899999987655 999999999 99999999999999999999 6665555552211 00 01
Q ss_pred HHHHHcC---------Ccccccccccc-chHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcC-C
Q 004609 397 LILADIG---------DHQSLEQNLST-FSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDR-V 464 (742)
Q Consensus 397 ~il~~ig---------~~~~~~~~lst-fSgg~k-rl~~~~~l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~-~ 464 (742)
.....++ ....+...+.. ||+||+ |+.++++++.+|+++||||||+|+|+.....+.. ++..+++. +
T Consensus 73 ~~~~~i~~~~q~~~~~~~~t~~~~l~~~lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~-~l~~~~~~~~ 151 (178)
T cd03229 73 PLRRRIGMVFQDFALFPHLTVLENIALGLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRA-LLKSLQAQLG 151 (178)
T ss_pred HHhhcEEEEecCCccCCCCCHHHheeecCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHhcC
Confidence 1111111 01122222322 999999 8999999999999999999999999999999998 44555655 7
Q ss_pred cEEEEEecChhh-hhhcccccceecc
Q 004609 465 GLAVVTTHYADL-SCLKDKDTRFENA 489 (742)
Q Consensus 465 ~~vlitTH~~~l-~~~a~~~~~i~~g 489 (742)
.++|++||+.+. ..++++++.+.+|
T Consensus 152 ~tiii~sH~~~~~~~~~d~i~~l~~g 177 (178)
T cd03229 152 ITVVLVTHDLDEAARLADRVVVLRDG 177 (178)
T ss_pred CEEEEEeCCHHHHHHhcCEEEEEeCC
Confidence 899999999874 4589988887765
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.5e-24 Score=253.37 Aligned_cols=165 Identities=21% Similarity=0.208 Sum_probs=126.3
Q ss_pred EEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhhh------hh--ceeecCCCC----CC
Q 004609 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS------KA--GLYLPAKNH----PR 391 (742)
Q Consensus 327 l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~ma------q~--G~~vPa~~~----~~ 391 (742)
|.++||+++||++.+ ++||+|.+| ++++|+||||||||||||+| |++.+-. .. ..|+|+... ..
T Consensus 2 i~i~nls~~~g~~~~l~~vs~~i~~G-e~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~~~~q~~~~~~~~~ 80 (638)
T PRK10636 2 IVFSSLQIRRGVRVLLDNATATINPG-QKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPALPQPA 80 (638)
T ss_pred EEEEEEEEEeCCceeecCcEEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCCCH
Confidence 578999999998766 999999999 99999999999999999999 5543310 00 012333210 00
Q ss_pred chH---------------------------------------------HHHHHHHcCCc-cccccccccchHHHH-HHHH
Q 004609 392 LPW---------------------------------------------FDLILADIGDH-QSLEQNLSTFSGHIS-RIVD 424 (742)
Q Consensus 392 i~~---------------------------------------------~d~il~~ig~~-~~~~~~lstfSgg~k-rl~~ 424 (742)
+++ +..++..+|+. ...++++++|||||+ |+.+
T Consensus 81 ~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv~L 160 (638)
T PRK10636 81 LEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNL 160 (638)
T ss_pred HHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHHHHH
Confidence 111 11234455665 467889999999999 9999
Q ss_pred HHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEecC
Q 004609 425 ILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFSLE 496 (742)
Q Consensus 425 ~~~l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~~~ 496 (742)
+++++.+|++|||||||+|||+.....|...+.+ .+++||+||||.+ +..+|++++.+.+|.+..+.+
T Consensus 161 A~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~----~~~tviivsHd~~~l~~~~d~i~~L~~G~i~~~~g 229 (638)
T PRK10636 161 AQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKS----YQGTLILISHDRDFLDPIVDKIIHIEQQSLFEYTG 229 (638)
T ss_pred HHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHh----CCCeEEEEeCCHHHHHHhcCEEEEEeCCEEEEecC
Confidence 9999999999999999999999998887763333 3679999999987 667999999999998864433
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.91 E-value=3e-24 Score=235.99 Aligned_cols=163 Identities=20% Similarity=0.219 Sum_probs=131.0
Q ss_pred eeeeecCCceecccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh-----------------------hhhceeecC
Q 004609 331 SLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------------SKAGLYLPA 386 (742)
Q Consensus 331 nl~~~y~~~~v~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m-----------------------aq~G~~vPa 386 (742)
||++.|++..+++||++.+| ++++|+||||||||||||+| |+..+- .+...|+|+
T Consensus 4 ~l~~~~~~~~~~isl~i~~G-ei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q 82 (354)
T TIGR02142 4 RFSKRLGDFSLDADFTLPGQ-GVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQ 82 (354)
T ss_pred EEEEEECCEEEEEEEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEec
Confidence 78999988667999999999 99999999999999999999 665321 111235565
Q ss_pred CCCC--CchH-------------------HHHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCC
Q 004609 387 KNHP--RLPW-------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGT 444 (742)
Q Consensus 387 ~~~~--~i~~-------------------~d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLDEp~~gl 444 (742)
.... .+++ ++.++..+|+.+.+++.+++|||||+ |++++++++.+|+++||||||+||
T Consensus 83 ~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~L 162 (354)
T TIGR02142 83 EARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAAL 162 (354)
T ss_pred CCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCC
Confidence 5311 1122 23456667888888999999999999 899999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 445 DPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 445 Dp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
|+.....+...+.+...+.+.|+|++||+.+ +..+++++..+.+|.+...
T Consensus 163 D~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~ 213 (354)
T TIGR02142 163 DDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAA 213 (354)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEE
Confidence 9999999998555443444889999999987 5678999999999988654
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.7e-24 Score=227.06 Aligned_cols=166 Identities=19% Similarity=0.245 Sum_probs=131.3
Q ss_pred cEEEeeeeeecC-Ccee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh----------------hhhceeec
Q 004609 326 EMTVGSLSKGIS-DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM----------------SKAGLYLP 385 (742)
Q Consensus 326 ~l~~~nl~~~y~-~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m----------------aq~G~~vP 385 (742)
.+.++|+++.|+ ++.+ ++||++.+| ++++|+||||||||||||+| |++.+- .+...|+|
T Consensus 6 ~l~~~~l~~~~~~~~~il~~vsl~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v~ 84 (272)
T PRK15056 6 GIVVNDVTVTWRNGHTALRDASFTVPGG-SIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVP 84 (272)
T ss_pred eEEEEeEEEEecCCcEEEEeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEec
Confidence 478899999995 4555 999999999 99999999999999999999 665321 11134666
Q ss_pred CCCCC----Cch-------------------------HHHHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEE
Q 004609 386 AKNHP----RLP-------------------------WFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLV 435 (742)
Q Consensus 386 a~~~~----~i~-------------------------~~d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~Ll 435 (742)
+.... ... .++.++..+|+.+..++.+++|||||+ |+.++++++.+|+++
T Consensus 85 q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~ll 164 (272)
T PRK15056 85 QSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVI 164 (272)
T ss_pred cccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 65310 000 123456677888888999999999999 899999999999999
Q ss_pred EEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 436 LIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 436 LLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
||||||+|||+.....+... +..+.+.|.++|++||+.+ +..+|++.+.+ +|.+...
T Consensus 165 llDEPt~~LD~~~~~~l~~~-L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~ 222 (272)
T PRK15056 165 LLDEPFTGVDVKTEARIISL-LRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLAS 222 (272)
T ss_pred EEeCCCccCCHHHHHHHHHH-HHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEee
Confidence 99999999999999999984 4555666889999999986 66789987655 7887654
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.8e-24 Score=246.79 Aligned_cols=167 Identities=18% Similarity=0.175 Sum_probs=134.9
Q ss_pred cEEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh--------------------hhhce
Q 004609 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------SKAGL 382 (742)
Q Consensus 326 ~l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m--------------------aq~G~ 382 (742)
.++++|+++.|+++.+ ++||++.+| ++++|+||||||||||||++ |++.+- .+...
T Consensus 4 ~i~~~~l~~~~~~~~~l~~is~~i~~G-e~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 82 (501)
T PRK10762 4 LLQLKGIDKAFPGVKALSGAALNVYPG-RVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIG 82 (501)
T ss_pred eEEEeeeEEEeCCeEEeeeeeEEEcCC-eEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEE
Confidence 3678999999987655 999999999 99999999999999999999 665321 11123
Q ss_pred eecCCCC--CCchH-------------------------HHHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcE
Q 004609 383 YLPAKNH--PRLPW-------------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESL 434 (742)
Q Consensus 383 ~vPa~~~--~~i~~-------------------------~d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~L 434 (742)
|+|+... ..+++ +..++..+|+.+..++.+++|||||+ |+.++++++.+|++
T Consensus 83 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~l 162 (501)
T PRK10762 83 IIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKV 162 (501)
T ss_pred EEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCCE
Confidence 6666431 01111 23356667887778899999999999 89999999999999
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 435 VLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 435 lLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
|||||||+|||+.....+.. ++..+.+.+.++|++|||.+ +..+|++++.+.+|.+...
T Consensus 163 llLDEPt~~LD~~~~~~l~~-~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~ 222 (501)
T PRK10762 163 IIMDEPTDALTDTETESLFR-VIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAE 222 (501)
T ss_pred EEEeCCcCCCCHHHHHHHHH-HHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEe
Confidence 99999999999999999998 55556666889999999987 5679999999999987643
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.3e-24 Score=222.49 Aligned_cols=164 Identities=16% Similarity=0.092 Sum_probs=124.8
Q ss_pred EEeeeeeecCC--cee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh-------------------hhhcee
Q 004609 328 TVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAGLY 383 (742)
Q Consensus 328 ~~~nl~~~y~~--~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m-------------------aq~G~~ 383 (742)
+++|+++.|++ .++ ++||++.+| ++++|+||||+||||||++| |+..+- .+...|
T Consensus 2 ~~~~l~~~~~~~~~~~l~~isl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (237)
T cd03252 2 TFEHVRFRYKPDGPVILDNISLRIKPG-EVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGV 80 (237)
T ss_pred EEEEEEEecCCCCccceeceEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEE
Confidence 57899999963 334 999999999 99999999999999999999 665321 112345
Q ss_pred ecCCCCC-CchHHHHH---------------HHHc-----------CCccccccccccchHHHH-HHHHHHHhcCCCcEE
Q 004609 384 LPAKNHP-RLPWFDLI---------------LADI-----------GDHQSLEQNLSTFSGHIS-RIVDILELVSRESLV 435 (742)
Q Consensus 384 vPa~~~~-~i~~~d~i---------------l~~i-----------g~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~Ll 435 (742)
+|+.... ..++.+++ +... +....+++.+.+|||||+ |+.++++++.+|+++
T Consensus 81 ~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~ll 160 (237)
T cd03252 81 VLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRIL 160 (237)
T ss_pred EcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEE
Confidence 6665311 11222221 1111 223334567899999999 899999999999999
Q ss_pred EEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcccccceecceEEEe
Q 004609 436 LIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 436 LLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~l~~~a~~~~~i~~g~~~~~ 494 (742)
||||||+|||+.....+...+. .+.+ |.++|++||+.+....|+++..+.+|.+..+
T Consensus 161 llDEP~~~LD~~~~~~l~~~l~-~~~~-~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~ 217 (237)
T cd03252 161 IFDEATSALDYESEHAIMRNMH-DICA-GRTVIIIAHRLSTVKNADRIIVMEKGRIVEQ 217 (237)
T ss_pred EEeCCcccCCHHHHHHHHHHHH-HhcC-CCEEEEEeCCHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999554 4554 7899999999986667999999999988754
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.9e-24 Score=226.96 Aligned_cols=167 Identities=19% Similarity=0.179 Sum_probs=131.7
Q ss_pred EEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh--------------------------
Q 004609 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------------- 377 (742)
Q Consensus 327 l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m-------------------------- 377 (742)
++++|+++.|+++.+ ++||++.+| ++++|+||||||||||||+| |++.+-
T Consensus 2 l~~~nl~~~~~~~~il~~vsl~i~~G-e~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~ 80 (272)
T PRK13547 2 LTADHLHVARRHRAILRDLSLRIEPG-RVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPR 80 (272)
T ss_pred eEEEEEEEEECCEeEEecceEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHH
Confidence 578999999987665 999999999 99999999999999999999 665321
Q ss_pred -hhhceeecCCCC--CCchHH-------------------------HHHHHHcCCccccccccccchHHHH-HHHHHHHh
Q 004609 378 -SKAGLYLPAKNH--PRLPWF-------------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILEL 428 (742)
Q Consensus 378 -aq~G~~vPa~~~--~~i~~~-------------------------d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l 428 (742)
.+...|+|+... ..+++. ..++..+|+....++.+++|||||+ |+.+++++
T Consensus 81 ~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral 160 (272)
T PRK13547 81 LARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVL 160 (272)
T ss_pred HHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHH
Confidence 112345665431 112222 2334456666677889999999999 89999999
Q ss_pred c---------CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 429 V---------SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 429 ~---------~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
+ .+|+++||||||+|||+.....+...+.+...+.+.++|++||+.+ +..+|++...+.+|.+...
T Consensus 161 ~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G~i~~~ 236 (272)
T PRK13547 161 AQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAH 236 (272)
T ss_pred hccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEEe
Confidence 9 5999999999999999999999999555433334889999999987 5578999999999988654
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.7e-24 Score=221.52 Aligned_cols=164 Identities=15% Similarity=0.166 Sum_probs=125.0
Q ss_pred EEeeeeeecCCc--ee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh-------------------hhhcee
Q 004609 328 TVGSLSKGISDF--PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAGLY 383 (742)
Q Consensus 328 ~~~nl~~~y~~~--~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m-------------------aq~G~~ 383 (742)
.++|+++.|++. .+ ++||++.+| ++++|+||||||||||||++ |++.+- .+...|
T Consensus 2 ~~~~l~~~~~~~~~~~l~~i~~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (234)
T cd03251 2 EFKNVTFRYPGDGPPVLRDISLDIPAG-ETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGL 80 (234)
T ss_pred EEEEEEEEeCCCCccceeeeeEEEcCC-CEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 578999999764 34 999999999 99999999999999999999 555321 112245
Q ss_pred ecCCCC-CCchHHHHH------------------------HHHc--CCccccccccccchHHHH-HHHHHHHhcCCCcEE
Q 004609 384 LPAKNH-PRLPWFDLI------------------------LADI--GDHQSLEQNLSTFSGHIS-RIVDILELVSRESLV 435 (742)
Q Consensus 384 vPa~~~-~~i~~~d~i------------------------l~~i--g~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~Ll 435 (742)
+|+... ...++.+++ +..+ +....+++.+.+||+||+ |+.++++++.+|+++
T Consensus 81 ~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ll 160 (234)
T cd03251 81 VSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPIL 160 (234)
T ss_pred eCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 555431 011222222 1111 333445677889999999 899999999999999
Q ss_pred EEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcccccceecceEEEe
Q 004609 436 LIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 436 LLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~l~~~a~~~~~i~~g~~~~~ 494 (742)
||||||+|||+.....+.. ++..+.+ +.++|++||+.+....|+++..+.+|.+...
T Consensus 161 lLDEP~~~LD~~~~~~l~~-~l~~~~~-~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~ 217 (234)
T cd03251 161 ILDEATSALDTESERLVQA-ALERLMK-NRTTFVIAHRLSTIENADRIVVLEDGKIVER 217 (234)
T ss_pred EEeCccccCCHHHHHHHHH-HHHHhcC-CCEEEEEecCHHHHhhCCEEEEecCCeEeee
Confidence 9999999999999999988 5555554 7899999999886566999999999988643
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.7e-24 Score=223.63 Aligned_cols=167 Identities=19% Similarity=0.250 Sum_probs=129.5
Q ss_pred CcEEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhh-----h--------------------
Q 004609 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLAS-----L-------------------- 376 (742)
Q Consensus 325 ~~l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~-----~-------------------- 376 (742)
..+.++|+++.|++..+ ++||++.+| ++++|+||||||||||||+| |+.. +
T Consensus 20 ~~l~~~~l~~~~~~~~il~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 98 (268)
T PRK14248 20 HILEVKDLSIYYGEKRAVNDISMDIEKH-AVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVV 98 (268)
T ss_pred ceEEEEEEEEEeCCceeeeceEEEEcCC-CEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHH
Confidence 36789999999987665 999999999 99999999999999999999 6542 0
Q ss_pred -hhhhceeecCCCCC-CchHHHHH----------------------HHHcCCc----cccccccccchHHHH-HHHHHHH
Q 004609 377 -MSKAGLYLPAKNHP-RLPWFDLI----------------------LADIGDH----QSLEQNLSTFSGHIS-RIVDILE 427 (742)
Q Consensus 377 -maq~G~~vPa~~~~-~i~~~d~i----------------------l~~ig~~----~~~~~~lstfSgg~k-rl~~~~~ 427 (742)
..+...|+|+.... ..+.++++ +..++.. ...++.+++|||||+ |+.++++
T Consensus 99 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~lara 178 (268)
T PRK14248 99 NLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIART 178 (268)
T ss_pred HHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHH
Confidence 01112456655311 01222222 2233332 345688999999999 8999999
Q ss_pred hcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 428 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 428 l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
++.+|+++||||||+|||+.....+.. ++..+.+ +.|+|++||+.+ +..+|++++.+.+|++..+
T Consensus 179 l~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~-~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~ 244 (268)
T PRK14248 179 LAMKPAVLLLDEPASALDPISNAKIEE-LITELKE-EYSIIIVTHNMQQALRVSDRTAFFLNGDLVEY 244 (268)
T ss_pred HhCCCCEEEEcCCCcccCHHHHHHHHH-HHHHHhc-CCEEEEEEeCHHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999988 4445555 579999999987 6679999999999998765
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.6e-24 Score=222.73 Aligned_cols=168 Identities=20% Similarity=0.214 Sum_probs=130.7
Q ss_pred CCcEEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhh----------------h-------
Q 004609 324 NSEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL----------------M------- 377 (742)
Q Consensus 324 ~~~l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~----------------m------- 377 (742)
.+.+.++|+++.|++..+ ++||++.+| ++++|+||||||||||||+| |++.+ +
T Consensus 11 ~~~l~~~~l~~~~~~~~il~~isl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~ 89 (260)
T PRK10744 11 PSKIQVRNLNFYYGKFHALKNINLDIAKN-QVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDI 89 (260)
T ss_pred CceEEEEEEEEEeCCeEEeeceeEEEcCC-CEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccch
Confidence 357899999999987655 999999999 99999999999999999999 66530 0
Q ss_pred ---hhhceeecCCCCC-CchHHH----------------------HHHHHcCCc----cccccccccchHHHH-HHHHHH
Q 004609 378 ---SKAGLYLPAKNHP-RLPWFD----------------------LILADIGDH----QSLEQNLSTFSGHIS-RIVDIL 426 (742)
Q Consensus 378 ---aq~G~~vPa~~~~-~i~~~d----------------------~il~~ig~~----~~~~~~lstfSgg~k-rl~~~~ 426 (742)
.+...|+|+.... ..++++ .++..++.. ..+++.+.+|||||+ |+++++
T Consensus 90 ~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~lar 169 (260)
T PRK10744 90 ALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIAR 169 (260)
T ss_pred HHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHH
Confidence 1112355655310 112222 233444442 346778899999999 899999
Q ss_pred HhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 427 ELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 427 ~l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
+++.+|+++||||||+|||+.....+...+. .+.+ +.|+|++||+.+ +..+++++..+.+|++..+
T Consensus 170 al~~~p~lllLDEPt~~LD~~~~~~l~~~L~-~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~ 236 (260)
T PRK10744 170 GIAIRPEVLLLDEPCSALDPISTGRIEELIT-ELKQ-DYTVVIVTHNMQQAARCSDYTAFMYLGELIEF 236 (260)
T ss_pred HHHCCCCEEEEcCCCccCCHHHHHHHHHHHH-HHhc-CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999988544 4554 689999999987 5578999999999988754
|
|
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.4e-24 Score=217.07 Aligned_cols=155 Identities=19% Similarity=0.195 Sum_probs=121.3
Q ss_pred EEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhh------------------hhhhceeec
Q 004609 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL------------------MSKAGLYLP 385 (742)
Q Consensus 327 l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~------------------maq~G~~vP 385 (742)
+.++|+++.|++..+ ++||++.+| ++++|+||||+||||||++| |+..+ ..+...|+|
T Consensus 2 l~~~~l~~~~~~~~il~~~s~~i~~G-e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~ 80 (200)
T PRK13540 2 LDVIELDFDYHDQPLLQQISFHLPAG-GLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVG 80 (200)
T ss_pred EEEEEEEEEeCCeeEEeeeeEEECCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEEec
Confidence 578999999987666 999999999 99999999999999999999 55422 011123555
Q ss_pred CCCCC--CchH----------------HHHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCH
Q 004609 386 AKNHP--RLPW----------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDP 446 (742)
Q Consensus 386 a~~~~--~i~~----------------~d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLDEp~~glDp 446 (742)
+.... ..++ ++.++..+++.+..++.+.+||+||+ |++++++++.+|+++||||||+|+|+
T Consensus 81 q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~ 160 (200)
T PRK13540 81 HRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDE 160 (200)
T ss_pred cccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCH
Confidence 44311 1222 23345556676677888999999999 89999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcccc
Q 004609 447 SEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKD 483 (742)
Q Consensus 447 ~~~~aL~~all~~l~~~~~~vlitTH~~~l~~~a~~~ 483 (742)
.....+...+.+ +++.+.++|++||+.+....+|..
T Consensus 161 ~~~~~l~~~l~~-~~~~~~tiii~sh~~~~~~~~d~~ 196 (200)
T PRK13540 161 LSLLTIITKIQE-HRAKGGAVLLTSHQDLPLNKADYE 196 (200)
T ss_pred HHHHHHHHHHHH-HHHcCCEEEEEeCCchhccccchh
Confidence 999999995554 566688999999998866656543
|
|
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.6e-24 Score=211.57 Aligned_cols=156 Identities=21% Similarity=0.221 Sum_probs=118.0
Q ss_pred EEEeeeeeecCCc--ee--cccccccCCceEEEEEeCCCCCcchHHhhHHhhhhhhhhceeecCCCCCCch-----HH-H
Q 004609 327 MTVGSLSKGISDF--PV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLP-----WF-D 396 (742)
Q Consensus 327 l~~~nl~~~y~~~--~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~lGli~~maq~G~~vPa~~~~~i~-----~~-d 396 (742)
++++|+++.|++. .+ ++||++.+| ++++|+||||+|||||||++ +|...|..|...+. .. .
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~G-e~~~i~G~nGsGKStLl~~l--------~G~~~~~~G~i~~~g~~~~~~~~ 71 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQG-EKIALLGRSGSGKSTLLQLL--------TGDLKPQQGEITLDGVPVSDLEK 71 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCC-CEEEEECCCCCCHHHHHHHH--------hccCCCCCCEEEECCEEHHHHHH
Confidence 3578999999764 34 999999999 99999999999999999999 56555555422111 00 0
Q ss_pred HHHHHcCC--c------cccccc-cccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcE
Q 004609 397 LILADIGD--H------QSLEQN-LSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGL 466 (742)
Q Consensus 397 ~il~~ig~--~------~~~~~~-lstfSgg~k-rl~~~~~l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~ 466 (742)
.+-..++. . ..+..+ +++||+||+ |+.++++++.+|+++||||||+|||+.....+...+. .+.+ +.|
T Consensus 72 ~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~-~~~~-~~t 149 (178)
T cd03247 72 ALSSLISVLNQRPYLFDTTLRNNLGRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIF-EVLK-DKT 149 (178)
T ss_pred HHHhhEEEEccCCeeecccHHHhhcccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHH-HHcC-CCE
Confidence 11111110 0 011111 789999999 8999999999999999999999999999999998554 4554 789
Q ss_pred EEEEecChhhhhhcccccceecceEEE
Q 004609 467 AVVTTHYADLSCLKDKDTRFENAATEF 493 (742)
Q Consensus 467 vlitTH~~~l~~~a~~~~~i~~g~~~~ 493 (742)
+|++||+.+....+++...+.+|.+..
T Consensus 150 ii~~sh~~~~~~~~d~~~~l~~g~i~~ 176 (178)
T cd03247 150 LIWITHHLTGIEHMDKILFLENGKIIM 176 (178)
T ss_pred EEEEecCHHHHHhCCEEEEEECCEEEe
Confidence 999999988666799999999888753
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.7e-24 Score=237.67 Aligned_cols=166 Identities=16% Similarity=0.113 Sum_probs=129.5
Q ss_pred EEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh-----------------------hhhc
Q 004609 328 TVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------------SKAG 381 (742)
Q Consensus 328 ~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m-----------------------aq~G 381 (742)
...++.+.|+...+ ++||++.+| ++++|+||||||||||||+| |++.+- .+..
T Consensus 30 ~~~~~~~~~~~~~~L~~isl~i~~G-ei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~i 108 (400)
T PRK10070 30 SKEQILEKTGLSLGVKDASLAIEEG-EIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKI 108 (400)
T ss_pred cHHHHHhhcCCeEEEEeEEEEEcCC-CEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCE
Confidence 34445555554333 999999999 99999999999999999999 665321 0123
Q ss_pred eeecCCCCC--CchH---------------------HHHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEEEE
Q 004609 382 LYLPAKNHP--RLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLI 437 (742)
Q Consensus 382 ~~vPa~~~~--~i~~---------------------~d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLL 437 (742)
.|+|+.... .+++ ++.++..+|+.+..++.+++|||||+ |+.++++++.+|++|||
T Consensus 109 gyv~Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLL 188 (400)
T PRK10070 109 AMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLM 188 (400)
T ss_pred EEEECCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 467766421 1122 12346677888888999999999999 89999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 438 DEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 438 DEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
||||+||||.....+...+.+...+.+.|+|++||+.+ +..+|+++..+.+|.+...
T Consensus 189 DEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~ 246 (400)
T PRK10070 189 DEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQV 246 (400)
T ss_pred ECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEec
Confidence 99999999999999999555443445889999999987 5678999999999988654
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.9e-24 Score=223.18 Aligned_cols=168 Identities=14% Similarity=0.180 Sum_probs=130.6
Q ss_pred cEEEeeeeeecCCcee-cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhh----h-----------------hhhce
Q 004609 326 EMTVGSLSKGISDFPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL----M-----------------SKAGL 382 (742)
Q Consensus 326 ~l~~~nl~~~y~~~~v-~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~----m-----------------aq~G~ 382 (742)
.++++|++++|+...+ ++||++.+| ++++|+||||+|||||||+| |+..+ - .+...
T Consensus 4 ~l~~~~l~~~~~~~il~~vsl~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~ 82 (254)
T PRK10418 4 QIELRNIALQAAQPLVHGVSLTLQRG-RVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIA 82 (254)
T ss_pred EEEEeCeEEEeccceecceEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEE
Confidence 4788999999943333 999999999 99999999999999999999 66543 0 11234
Q ss_pred eecCCCCCC----chH-------------------HHHHHHHcCCcc---ccccccccchHHHH-HHHHHHHhcCCCcEE
Q 004609 383 YLPAKNHPR----LPW-------------------FDLILADIGDHQ---SLEQNLSTFSGHIS-RIVDILELVSRESLV 435 (742)
Q Consensus 383 ~vPa~~~~~----i~~-------------------~d~il~~ig~~~---~~~~~lstfSgg~k-rl~~~~~l~~~~~Ll 435 (742)
|+|++.... ..+ +..++..+++.. .+++.+++||+||+ |+.++++++.+|+++
T Consensus 83 ~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lL 162 (254)
T PRK10418 83 TIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFI 162 (254)
T ss_pred EEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCEE
Confidence 666653110 111 122345556654 46788999999999 899999999999999
Q ss_pred EEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 436 LIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 436 LLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
||||||+|||+.....+...+.+...+.|.++|++||+.+ +..++++++.+.+|++..+
T Consensus 163 lLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~ 222 (254)
T PRK10418 163 IADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQ 222 (254)
T ss_pred EEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999998555443445889999999987 4578999999999998654
|
|
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.8e-24 Score=222.02 Aligned_cols=165 Identities=22% Similarity=0.243 Sum_probs=123.5
Q ss_pred EEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhh--hhh-------------------h-hhc
Q 004609 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLA--SLM-------------------S-KAG 381 (742)
Q Consensus 327 l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli--~~m-------------------a-q~G 381 (742)
++++|+++.|+++.+ ++||++.+| ++++|+|||||||||||++| |++ .+. . ..-
T Consensus 2 i~~~nl~~~~~~~~~l~~isl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (248)
T PRK09580 2 LSIKDLHVSVEDKAILRGLNLEVRPG-EVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGI 80 (248)
T ss_pred eEEEEEEEEeCCeeeeecceeEEcCC-CEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcce
Confidence 578999999987655 999999999 99999999999999999999 663 111 0 112
Q ss_pred eeecCCCCCCch-------------------------------HHHHHHHHcCCc-cccccccc-cchHHHH-HHHHHHH
Q 004609 382 LYLPAKNHPRLP-------------------------------WFDLILADIGDH-QSLEQNLS-TFSGHIS-RIVDILE 427 (742)
Q Consensus 382 ~~vPa~~~~~i~-------------------------------~~d~il~~ig~~-~~~~~~ls-tfSgg~k-rl~~~~~ 427 (742)
.|+|+... .++ .++.++..++.. +..++.++ .|||||+ |++++++
T Consensus 81 ~~~~q~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~lara 159 (248)
T PRK09580 81 FMAFQYPV-EIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQM 159 (248)
T ss_pred EEEecCch-hccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHH
Confidence 24444421 000 011223333432 23445554 7999999 8999999
Q ss_pred hcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChhhhh-h-cccccceecceEEEe
Q 004609 428 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSC-L-KDKDTRFENAATEFS 494 (742)
Q Consensus 428 l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~l~~-~-a~~~~~i~~g~~~~~ 494 (742)
++.+|+++||||||+|||+.....+.. ++..+++.++|+|++||+.++.. + ++++..+.+|.+...
T Consensus 160 l~~~p~illLDEPt~~LD~~~~~~l~~-~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~ 227 (248)
T PRK09580 160 AVLEPELCILDESDSGLDIDALKIVAD-GVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKS 227 (248)
T ss_pred HHcCCCEEEEeCCCccCCHHHHHHHHH-HHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEe
Confidence 999999999999999999999999988 55566766889999999988554 4 788888888887654
|
|
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.9e-24 Score=219.63 Aligned_cols=164 Identities=13% Similarity=0.167 Sum_probs=126.0
Q ss_pred CCcEEEeeeeeecCC---cee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh-------------------h
Q 004609 324 NSEMTVGSLSKGISD---FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------S 378 (742)
Q Consensus 324 ~~~l~~~nl~~~y~~---~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m-------------------a 378 (742)
.+.+.++|+++.|++ ..+ ++||++.+| ++++|+||||+||||||++| |++.+- .
T Consensus 9 ~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 87 (226)
T cd03248 9 KGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPG-EVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLH 87 (226)
T ss_pred CceEEEEEEEEEeCCCCCCccccceEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHH
Confidence 467899999999974 234 999999999 99999999999999999999 554320 1
Q ss_pred hhceeecCCCCC-CchHHH------------------------HHHHHc--CCccccccccccchHHHH-HHHHHHHhcC
Q 004609 379 KAGLYLPAKNHP-RLPWFD------------------------LILADI--GDHQSLEQNLSTFSGHIS-RIVDILELVS 430 (742)
Q Consensus 379 q~G~~vPa~~~~-~i~~~d------------------------~il~~i--g~~~~~~~~lstfSgg~k-rl~~~~~l~~ 430 (742)
+...|+|+.... ..++.+ .++..+ |....++..+.+|||||+ |+.++++++.
T Consensus 88 ~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~ 167 (226)
T cd03248 88 SKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIR 167 (226)
T ss_pred hhEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhc
Confidence 122355554310 001111 123334 566667888999999999 8999999999
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcccccceecce
Q 004609 431 RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAA 490 (742)
Q Consensus 431 ~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~l~~~a~~~~~i~~g~ 490 (742)
+|+++||||||+|||+.....+...+.+ +.+ +.|+|++||+.+....|++++.+.+|.
T Consensus 168 ~p~llllDEPt~~LD~~~~~~l~~~l~~-~~~-~~tii~~sh~~~~~~~~d~i~~l~~g~ 225 (226)
T cd03248 168 NPQVLILDEATSALDAESEQQVQQALYD-WPE-RRTVLVIAHRLSTVERADQILVLDGGR 225 (226)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHH-HcC-CCEEEEEECCHHHHHhCCEEEEecCCc
Confidence 9999999999999999999999985554 555 589999999988666789888887764
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.6e-24 Score=218.01 Aligned_cols=158 Identities=22% Similarity=0.242 Sum_probs=118.3
Q ss_pred EEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhHHhhhhhhhhce--eecCCCCCCc--------hH
Q 004609 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGL--YLPAKNHPRL--------PW 394 (742)
Q Consensus 327 l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~lGli~~maq~G~--~vPa~~~~~i--------~~ 394 (742)
+.++|+++.|++..+ ++||++.+| ++++|+||||+|||||||++ +|. +.|..|...+ ..
T Consensus 1 l~~~~l~~~~~~~~~l~~is~~i~~G-e~~~i~G~nGsGKStLl~~l--------~G~~~~~p~~G~i~~~g~~~~~~~~ 71 (200)
T cd03217 1 LEIKDLHVSVGGKEILKGVNLTIKKG-EVHALMGPNGSGKSTLAKTI--------MGHPKYEVTEGEILFKGEDITDLPP 71 (200)
T ss_pred CeEEEEEEEeCCEEeeeccceEECCC-cEEEEECCCCCCHHHHHHHH--------hCCCcCCCCccEEEECCEECCcCCH
Confidence 357899999987555 999999999 99999999999999999999 333 1232221100 00
Q ss_pred HHH-------------HHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHH
Q 004609 395 FDL-------------ILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYL 460 (742)
Q Consensus 395 ~d~-------------il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l 460 (742)
... ++..+-..+.+....+.||+||+ |++++++++.+|+++||||||+|+|+.....+...+. .+
T Consensus 72 ~~~~~~~i~~v~q~~~~~~~~~~~~~l~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~-~~ 150 (200)
T cd03217 72 EERARLGIFLAFQYPPEIPGVKNADFLRYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVIN-KL 150 (200)
T ss_pred HHHhhCcEEEeecChhhccCccHHHHHhhccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHH-HH
Confidence 000 00000011122333468999999 8999999999999999999999999999999988555 45
Q ss_pred hcCCcEEEEEecChhhhh--hcccccceecceEEEe
Q 004609 461 RDRVGLAVVTTHYADLSC--LKDKDTRFENAATEFS 494 (742)
Q Consensus 461 ~~~~~~vlitTH~~~l~~--~a~~~~~i~~g~~~~~ 494 (742)
.+.+.|+|++||+.+... ++++.+.+.+|.+...
T Consensus 151 ~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~ 186 (200)
T cd03217 151 REEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKS 186 (200)
T ss_pred HHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEE
Confidence 666889999999998665 7999999999988654
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.9e-24 Score=222.38 Aligned_cols=167 Identities=17% Similarity=0.209 Sum_probs=132.1
Q ss_pred EEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh--------------------hhhcee
Q 004609 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------SKAGLY 383 (742)
Q Consensus 327 l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m--------------------aq~G~~ 383 (742)
+.++|+++.|++... ++|+.|..| +.++++|||||||||+||+| ||..+- .+..+|
T Consensus 3 i~i~~~~~~~~~~~a~~di~l~i~~G-e~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGf 81 (345)
T COG1118 3 IRINNVKKRFGAFGALDDISLDIKSG-ELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGF 81 (345)
T ss_pred eeehhhhhhcccccccccceeeecCC-cEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeE
Confidence 567888898987655 899999999 99999999999999999999 444321 011123
Q ss_pred ecCCC--CCCchHHHH-----------------------HHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEEEE
Q 004609 384 LPAKN--HPRLPWFDL-----------------------ILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLI 437 (742)
Q Consensus 384 vPa~~--~~~i~~~d~-----------------------il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLL 437 (742)
++++. ...++++++ ++..+.+++..++++..|||||+ |++++++++-+|++|||
T Consensus 82 vFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLL 161 (345)
T COG1118 82 VFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLL 161 (345)
T ss_pred EEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEee
Confidence 33332 122333333 45566777888999999999999 99999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 438 DEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 438 DEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
|||++.||..-+..|-.-+.+...+.|.+++++|||.+ ...+++++..+.+|.++-.
T Consensus 162 DEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqv 219 (345)
T COG1118 162 DEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQV 219 (345)
T ss_pred cCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeee
Confidence 99999999999999988555554555999999999987 6679999999999988643
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.8e-24 Score=230.63 Aligned_cols=167 Identities=20% Similarity=0.173 Sum_probs=132.9
Q ss_pred cEEEeeeeeecCCc-----ee-cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhh----------------------
Q 004609 326 EMTVGSLSKGISDF-----PV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL---------------------- 376 (742)
Q Consensus 326 ~l~~~nl~~~y~~~-----~v-~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~---------------------- 376 (742)
.++++||++.|++. .+ ++||+|.+| ++++|+||||||||||+++| |++..
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~G-e~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~ 81 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQG-EVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEK 81 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCC-CEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHH
Confidence 36889999999762 23 999999999 99999999999999999999 77641
Q ss_pred -hh----hhceeecCCCCC----CchH----------------------HHHHHHHcCCcc---ccccccccchHHHH-H
Q 004609 377 -MS----KAGLYLPAKNHP----RLPW----------------------FDLILADIGDHQ---SLEQNLSTFSGHIS-R 421 (742)
Q Consensus 377 -ma----q~G~~vPa~~~~----~i~~----------------------~d~il~~ig~~~---~~~~~lstfSgg~k-r 421 (742)
+. +...++|++... .+.+ ...++..+|+.+ .+++++++|||||+ |
T Consensus 82 ~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QR 161 (326)
T PRK11022 82 ERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQR 161 (326)
T ss_pred HHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHH
Confidence 01 123577776421 1111 123456677753 46789999999999 9
Q ss_pred HHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEecChhh-hhhcccccceecceEEEe
Q 004609 422 IVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYADL-SCLKDKDTRFENAATEFS 494 (742)
Q Consensus 422 l~~~~~l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~-~~~~vlitTH~~~l-~~~a~~~~~i~~g~~~~~ 494 (742)
+.++++++.+|++||+||||+|||+.....+...+ ..+.+ .|.++|++|||+.+ ..++|++..+.+|.+...
T Consensus 162 v~iArAL~~~P~llilDEPts~LD~~~~~~il~lL-~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~ 235 (326)
T PRK11022 162 VMIAMAIACRPKLLIADEPTTALDVTIQAQIIELL-LELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVET 235 (326)
T ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999944 45554 58899999999885 579999999999988654
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.3e-24 Score=245.49 Aligned_cols=167 Identities=16% Similarity=0.177 Sum_probs=135.4
Q ss_pred cEEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhh--h--------------------hhh
Q 004609 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL--M--------------------SKA 380 (742)
Q Consensus 326 ~l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~--m--------------------aq~ 380 (742)
.++++|+++.|++..+ ++||++.+| ++++|+||||||||||||+| |++.+ - .+.
T Consensus 5 ~l~~~nl~~~~~~~~il~~isl~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 83 (506)
T PRK13549 5 LLEMKNITKTFGGVKALDNVSLKVRAG-EIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAG 83 (506)
T ss_pred eEEEeeeEEEeCCeEeecceeEEEeCC-eEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCC
Confidence 4788999999987665 999999999 99999999999999999999 66542 0 111
Q ss_pred ceeecCCCC--CCchH------------------------HHHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCc
Q 004609 381 GLYLPAKNH--PRLPW------------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRES 433 (742)
Q Consensus 381 G~~vPa~~~--~~i~~------------------------~d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~ 433 (742)
..|+|+... ..+++ +..++..+|+.+..++.+++|||||+ |+.++++++.+|+
T Consensus 84 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~ 163 (506)
T PRK13549 84 IAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQAR 163 (506)
T ss_pred eEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCC
Confidence 246666531 01111 23456667777778899999999999 9999999999999
Q ss_pred EEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 434 LVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 434 LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
++||||||+|||+.....+.. ++..+.+.|.++|++||+.+ +..+|++++.+.+|.+.+.
T Consensus 164 lllLDEPt~~LD~~~~~~l~~-~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~ 224 (506)
T PRK13549 164 LLILDEPTASLTESETAVLLD-IIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGT 224 (506)
T ss_pred EEEEeCCCCCCCHHHHHHHHH-HHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeee
Confidence 999999999999999999998 45455666889999999987 5678999999999987654
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.7e-24 Score=222.04 Aligned_cols=165 Identities=17% Similarity=0.256 Sum_probs=129.6
Q ss_pred EEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhh------h------------------hh
Q 004609 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL------M------------------SK 379 (742)
Q Consensus 327 l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~------m------------------aq 379 (742)
+.++|+++.|++..+ ++||++.+| ++++|+|||||||||||++| |+..+ - ..
T Consensus 4 l~~~~l~~~~~~~~~l~~is~~i~~G-e~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 82 (250)
T PRK14247 4 IEIRDLKVSFGQVEVLDGVNLEIPDN-TITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRR 82 (250)
T ss_pred EEEEeeEEEECCeeeeecceeEEcCC-CEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhc
Confidence 678999999987655 999999999 99999999999999999999 66531 0 01
Q ss_pred hceeecCCCC--CCchHHHHH-----------------------HHHcCCc----cccccccccchHHHH-HHHHHHHhc
Q 004609 380 AGLYLPAKNH--PRLPWFDLI-----------------------LADIGDH----QSLEQNLSTFSGHIS-RIVDILELV 429 (742)
Q Consensus 380 ~G~~vPa~~~--~~i~~~d~i-----------------------l~~ig~~----~~~~~~lstfSgg~k-rl~~~~~l~ 429 (742)
...|+|+... ..+++.+++ +..+|+. +.+++.+.+|||||+ |++++++++
T Consensus 83 ~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~ 162 (250)
T PRK14247 83 RVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALA 162 (250)
T ss_pred cEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHh
Confidence 1235666532 122333332 3334543 246788999999999 899999999
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 430 SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 430 ~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
.+|+++||||||+|||+.....+...+. .+.+ +.++|++||+.+ +..+|+++..+.+|.+..+
T Consensus 163 ~~p~lllLDEP~~~LD~~~~~~l~~~l~-~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~ 226 (250)
T PRK14247 163 FQPEVLLADEPTANLDPENTAKIESLFL-ELKK-DMTIVLVTHFPQQAARISDYVAFLYKGQIVEW 226 (250)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHH-HHhc-CCEEEEEeCCHHHHHHhcCEEEEEECCeEEEE
Confidence 9999999999999999999999998554 4554 789999999988 5578999999999988654
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.7e-24 Score=224.66 Aligned_cols=167 Identities=16% Similarity=0.159 Sum_probs=130.9
Q ss_pred EEEeeeeeecC---------Ccee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh-----------------
Q 004609 327 MTVGSLSKGIS---------DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM----------------- 377 (742)
Q Consensus 327 l~~~nl~~~y~---------~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m----------------- 377 (742)
+.++||++.|+ ++.+ ++||++.+| ++++|+||||+|||||||+| |+..+-
T Consensus 4 l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~ 82 (268)
T PRK10419 4 LNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSG-ETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA 82 (268)
T ss_pred EEEeceEEEecCCccccccCceeeEeceeEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChh
Confidence 67899999997 3444 999999999 99999999999999999999 554320
Q ss_pred -----hhhceeecCCCCC----CchH----------------------HHHHHHHcCCc-cccccccccchHHHH-HHHH
Q 004609 378 -----SKAGLYLPAKNHP----RLPW----------------------FDLILADIGDH-QSLEQNLSTFSGHIS-RIVD 424 (742)
Q Consensus 378 -----aq~G~~vPa~~~~----~i~~----------------------~d~il~~ig~~-~~~~~~lstfSgg~k-rl~~ 424 (742)
.+...|+|+.... ..+. ++.++..+|+. ...++.+..||+||+ |+++
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~l 162 (268)
T PRK10419 83 QRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCL 162 (268)
T ss_pred HHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHH
Confidence 1123456655310 0111 22345666775 567889999999999 8999
Q ss_pred HHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 425 ILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 425 ~~~l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
+++++.+|++|||||||+|||+.....+...+.+...+.+.|+|++||+.+ +..+|+++..+.+|.+...
T Consensus 163 aral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~ 233 (268)
T PRK10419 163 ARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVET 233 (268)
T ss_pred HHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeee
Confidence 999999999999999999999999999998555443344789999999988 5568999999999988654
|
|
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=99.91 E-value=6e-24 Score=218.10 Aligned_cols=166 Identities=16% Similarity=0.133 Sum_probs=126.0
Q ss_pred cEEEeeeeeecCC--cee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh-------------------hhhc
Q 004609 326 EMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAG 381 (742)
Q Consensus 326 ~l~~~nl~~~y~~--~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m-------------------aq~G 381 (742)
.++++|+++.|++ +++ ++||++.+| ++++|+||||+||||||++| |+..+- .+..
T Consensus 2 ~l~~~~l~~~~~~~~~~~l~~i~~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (221)
T cd03244 2 DIEFKNVSLRYRPNLPPVLKNISFSIKPG-EKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRI 80 (221)
T ss_pred cEEEEEEEEecCCCCcccccceEEEECCC-CEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhE
Confidence 5789999999964 234 999999999 99999999999999999999 554221 1122
Q ss_pred eeecCCCCC-CchHHH--------------HHHHHcCCcccc-----------ccccccchHHHH-HHHHHHHhcCCCcE
Q 004609 382 LYLPAKNHP-RLPWFD--------------LILADIGDHQSL-----------EQNLSTFSGHIS-RIVDILELVSRESL 434 (742)
Q Consensus 382 ~~vPa~~~~-~i~~~d--------------~il~~ig~~~~~-----------~~~lstfSgg~k-rl~~~~~l~~~~~L 434 (742)
.|+|+.... ..++.+ ..+..+++.+.+ +..++.||+||+ |+.++++++.+|++
T Consensus 81 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~l 160 (221)
T cd03244 81 SIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKI 160 (221)
T ss_pred EEECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 355655310 011222 223444444433 468899999999 89999999999999
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcccccceecceEEEe
Q 004609 435 VLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 435 lLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~l~~~a~~~~~i~~g~~~~~ 494 (742)
+||||||+|||+.....+...+. .+.+ +.++|++||+.+....|++...+.+|.+...
T Consensus 161 lllDEP~~~LD~~~~~~l~~~l~-~~~~-~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~ 218 (221)
T cd03244 161 LVLDEATASVDPETDALIQKTIR-EAFK-DCTVLTIAHRLDTIIDSDRILVLDKGRVVEF 218 (221)
T ss_pred EEEeCccccCCHHHHHHHHHHHH-HhcC-CCEEEEEeCCHHHHhhCCEEEEEECCeEEec
Confidence 99999999999999999998544 4554 5899999999886666999999999887643
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.7e-24 Score=216.34 Aligned_cols=147 Identities=22% Similarity=0.226 Sum_probs=116.0
Q ss_pred EEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh------------------hhhceeec
Q 004609 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------SKAGLYLP 385 (742)
Q Consensus 327 l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m------------------aq~G~~vP 385 (742)
++++|+++.|++..+ ++||++.+| ++++|+||||+|||||||+| |+..+- .+...|+|
T Consensus 1 l~~~~l~~~~~~~~~l~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (198)
T TIGR01189 1 LAARNLACSRGERMLFEGLSFTLNAG-EALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLG 79 (198)
T ss_pred CEEEEEEEEECCEEEEeeeeEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEec
Confidence 357899999987665 999999999 99999999999999999999 654321 11223555
Q ss_pred CCCCC--CchH-----------------HHHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCC
Q 004609 386 AKNHP--RLPW-----------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTD 445 (742)
Q Consensus 386 a~~~~--~i~~-----------------~d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLDEp~~glD 445 (742)
+.... .+++ +..++..+|+.+..++.+.+||+||+ |++++++++.+|+++||||||+|||
T Consensus 80 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD 159 (198)
T TIGR01189 80 HLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALD 159 (198)
T ss_pred cCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCC
Confidence 54311 1122 22345667777778899999999999 8999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEecChh
Q 004609 446 PSEGVALATSILQYLRDRVGLAVVTTHYAD 475 (742)
Q Consensus 446 p~~~~aL~~all~~l~~~~~~vlitTH~~~ 475 (742)
+.....+...+.+ +.+.|.|+|++||+..
T Consensus 160 ~~~~~~l~~~l~~-~~~~~~tii~~sH~~~ 188 (198)
T TIGR01189 160 KAGVALLAGLLRA-HLARGGIVLLTTHQDL 188 (198)
T ss_pred HHHHHHHHHHHHH-HHhCCCEEEEEEcccc
Confidence 9999999985554 5566889999999863
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1e-23 Score=220.98 Aligned_cols=166 Identities=20% Similarity=0.218 Sum_probs=129.1
Q ss_pred cEEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhh----------------h---------
Q 004609 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL----------------M--------- 377 (742)
Q Consensus 326 ~l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~----------------m--------- 377 (742)
.++++||++.|++..+ ++||++.+| ++++|+||||+||||||++| |++.+ +
T Consensus 4 ~l~~~~l~~~~~~~~~l~~is~~i~~G-e~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 82 (253)
T PRK14267 4 AIETVNLRVYYGSNHVIKGVDLKIPQN-GVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIE 82 (253)
T ss_pred eEEEEeEEEEeCCeeeeecceEEEcCC-CEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHH
Confidence 4678999999987655 999999999 99999999999999999999 66532 0
Q ss_pred -hhhceeecCCCCC--CchHHHH-----------------------HHHHcCCc----cccccccccchHHHH-HHHHHH
Q 004609 378 -SKAGLYLPAKNHP--RLPWFDL-----------------------ILADIGDH----QSLEQNLSTFSGHIS-RIVDIL 426 (742)
Q Consensus 378 -aq~G~~vPa~~~~--~i~~~d~-----------------------il~~ig~~----~~~~~~lstfSgg~k-rl~~~~ 426 (742)
.+...|+|+.... .+++.++ ++..+|+. ...++.+.+|||||+ |+++++
T Consensus 83 ~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lar 162 (253)
T PRK14267 83 VRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIAR 162 (253)
T ss_pred HhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHH
Confidence 0112355554311 1222222 23344442 345778899999999 899999
Q ss_pred HhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 427 ELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 427 ~l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
+++.+|+++||||||+|||+.....+...+. .+.+ +.|+|++||+.+ +..+|+++..+.+|.+...
T Consensus 163 al~~~p~llllDEP~~~LD~~~~~~l~~~l~-~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~ 229 (253)
T PRK14267 163 ALAMKPKILLMDEPTANIDPVGTAKIEELLF-ELKK-EYTIVLVTHSPAQAARVSDYVAFLYLGKLIEV 229 (253)
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHH-HHhh-CCEEEEEECCHHHHHhhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999998555 4554 589999999988 5678999999999988654
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.1e-24 Score=220.62 Aligned_cols=164 Identities=15% Similarity=0.125 Sum_probs=123.2
Q ss_pred EEeeeeeecCC---cee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh-------------------hhhce
Q 004609 328 TVGSLSKGISD---FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAGL 382 (742)
Q Consensus 328 ~~~nl~~~y~~---~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m-------------------aq~G~ 382 (742)
+++|+++.|++ .++ ++||++++| ++++|+|||||||||||++| |++.+- .+...
T Consensus 2 ~i~~l~~~~~~~~~~~~l~~i~~~i~~G-e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 2 EFKNVSFRYPSRPDVPILKGLSLTIPPG-KTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred eEEEEEEecCCCCCccceeceEEEecCC-CEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 57899999964 233 899999999 99999999999999999999 554321 11123
Q ss_pred eecCCCCC-CchHHHHH---------------HHHc-----------CCccccccccccchHHHH-HHHHHHHhcCCCcE
Q 004609 383 YLPAKNHP-RLPWFDLI---------------LADI-----------GDHQSLEQNLSTFSGHIS-RIVDILELVSRESL 434 (742)
Q Consensus 383 ~vPa~~~~-~i~~~d~i---------------l~~i-----------g~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~L 434 (742)
|+|+.... ..++.+++ +... +....+...+..|||||+ |+.++++++.+|++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 160 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKI 160 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 55554310 01222221 1111 223345567789999999 89999999999999
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcccccceecceEEEe
Q 004609 435 VLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 435 lLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~l~~~a~~~~~i~~g~~~~~ 494 (742)
+||||||+|||+.....+...+ ..+. .|.++|++||+.+...+|+++..+.+|.+..+
T Consensus 161 lllDEP~~gLD~~~~~~l~~~l-~~~~-~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~ 218 (238)
T cd03249 161 LLLDEATSALDAESEKLVQEAL-DRAM-KGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQ 218 (238)
T ss_pred EEEeCccccCCHHHHHHHHHHH-HHhc-CCCEEEEEeCCHHHHhhCCEEEEEECCEEEEe
Confidence 9999999999999999999844 4455 58899999999886668999999999988654
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=99.91 E-value=7e-24 Score=244.54 Aligned_cols=166 Identities=20% Similarity=0.218 Sum_probs=131.9
Q ss_pred EEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhh--hh------h------------------
Q 004609 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLA--SL------M------------------ 377 (742)
Q Consensus 327 l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli--~~------m------------------ 377 (742)
++++|+++.|+++.+ ++||++.+| ++++|+||||||||||||+| |++ .+ +
T Consensus 1 l~~~~l~~~~~~~~~l~~is~~i~~G-e~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g 79 (520)
T TIGR03269 1 IEVKNLTKKFDGKEVLKNISFTIEEG-EVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVG 79 (520)
T ss_pred CEEEEEEEEECCeEeeeceeEEEcCC-CEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccccc
Confidence 367899999987655 999999999 99999999999999999999 764 11 0
Q ss_pred ----------------------------hhhceeecCCC-C--CCchH---------------------HHHHHHHcCCc
Q 004609 378 ----------------------------SKAGLYLPAKN-H--PRLPW---------------------FDLILADIGDH 405 (742)
Q Consensus 378 ----------------------------aq~G~~vPa~~-~--~~i~~---------------------~d~il~~ig~~ 405 (742)
.+...++|+.. . ..+.. ++.++..+|+.
T Consensus 80 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~ 159 (520)
T TIGR03269 80 EPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLS 159 (520)
T ss_pred cccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh
Confidence 01123556641 1 11111 22346667777
Q ss_pred cccccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccc
Q 004609 406 QSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKD 483 (742)
Q Consensus 406 ~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~ 483 (742)
+..++.+++|||||+ |+.++++++.+|++|||||||+|||+.....+...+.+...+.|.|||++|||.+ +..+|+++
T Consensus 160 ~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~i 239 (520)
T TIGR03269 160 HRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKA 239 (520)
T ss_pred hhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEE
Confidence 778899999999999 9999999999999999999999999999999998555443555889999999988 55789999
Q ss_pred cceecceEEE
Q 004609 484 TRFENAATEF 493 (742)
Q Consensus 484 ~~i~~g~~~~ 493 (742)
+.+.+|.+..
T Consensus 240 ~~l~~G~i~~ 249 (520)
T TIGR03269 240 IWLENGEIKE 249 (520)
T ss_pred EEEeCCEEee
Confidence 9999988754
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.4e-24 Score=220.43 Aligned_cols=167 Identities=23% Similarity=0.233 Sum_probs=131.5
Q ss_pred EEEeeeeeecCCcee-cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh-----------------hhhceeecCC
Q 004609 327 MTVGSLSKGISDFPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------SKAGLYLPAK 387 (742)
Q Consensus 327 l~~~nl~~~y~~~~v-~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m-----------------aq~G~~vPa~ 387 (742)
+.++|+++.|++..+ ++||++.+| ++++|+||||+||||||+++ |+..+- .+...++|+.
T Consensus 1 l~~~~l~~~~~~~~l~~is~~i~~G-e~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~ 79 (235)
T cd03299 1 LKVENLSKDWKEFKLKNVSLEVERG-DYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQN 79 (235)
T ss_pred CeeEeEEEEeCCceeeeeEEEEcCC-cEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEeec
Confidence 357899999976544 999999999 99999999999999999999 554321 1112355554
Q ss_pred CCCC--chH---------------------HHHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCC
Q 004609 388 NHPR--LPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSG 443 (742)
Q Consensus 388 ~~~~--i~~---------------------~d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLDEp~~g 443 (742)
.... +++ +..++..+|+...+++.+.+||+||+ |++++++++.+|+++||||||+|
T Consensus 80 ~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~g 159 (235)
T cd03299 80 YALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSA 159 (235)
T ss_pred CccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCccc
Confidence 3111 111 12345667787888999999999999 89999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 444 TDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 444 lDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
+|+.....+...+.+...+.+.|+|++||+.+ +..+++++..+.+|.+...
T Consensus 160 LD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~ 211 (235)
T cd03299 160 LDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQV 211 (235)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 99999999998555443344889999999987 5678999999999988654
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.4e-23 Score=224.34 Aligned_cols=168 Identities=21% Similarity=0.244 Sum_probs=130.3
Q ss_pred CCcEEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhh--h--------------h-------
Q 004609 324 NSEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLAS--L--------------M------- 377 (742)
Q Consensus 324 ~~~l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~--~--------------m------- 377 (742)
+..+.++|+++.|++..+ ++||++.+| ++++|+|||||||||||++| |+.. . +
T Consensus 37 ~~~l~~~~l~~~~~~~~il~~vsl~i~~G-e~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~ 115 (286)
T PRK14275 37 KPHVVAKNFSIYYGEFEAVKKVNADILSK-YVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDE 115 (286)
T ss_pred ceEEEEeeeEEEECCEEEEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccch
Confidence 346899999999987555 999999999 99999999999999999999 6532 0 0
Q ss_pred ---hhhceeecCCCCCC-chHHH----------------------HHHHHcCC----ccccccccccchHHHH-HHHHHH
Q 004609 378 ---SKAGLYLPAKNHPR-LPWFD----------------------LILADIGD----HQSLEQNLSTFSGHIS-RIVDIL 426 (742)
Q Consensus 378 ---aq~G~~vPa~~~~~-i~~~d----------------------~il~~ig~----~~~~~~~lstfSgg~k-rl~~~~ 426 (742)
.+...|+|+..... .++++ .++..+|+ .+.+++.+++|||||+ |+.+++
T Consensus 116 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAr 195 (286)
T PRK14275 116 VLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVAR 195 (286)
T ss_pred HHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHH
Confidence 11123566653211 11222 22333443 3456788999999999 899999
Q ss_pred HhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 427 ELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 427 ~l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
+++.+|+++||||||+|||+.....+...+ ..+.. +.++|++||+.+ +..+|++++.+.+|.+..+
T Consensus 196 aL~~~p~lllLDEPt~gLD~~~~~~l~~~L-~~~~~-~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~ 262 (286)
T PRK14275 196 TLAVEPEILLLDEPTSALDPKATAKIEDLI-QELRG-SYTIMIVTHNMQQASRVSDYTMFFYEGVLVEH 262 (286)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHHHH-HHHhc-CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999999844 45554 579999999988 4678999999999988654
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.5e-24 Score=221.74 Aligned_cols=157 Identities=20% Similarity=0.258 Sum_probs=121.0
Q ss_pred cCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh------------------hhhceeec-CCCC--CC
Q 004609 336 ISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------SKAGLYLP-AKNH--PR 391 (742)
Q Consensus 336 y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m------------------aq~G~~vP-a~~~--~~ 391 (742)
|+++.+ ++||++.+| ++++|+|||||||||||++| |++.+- .+...|+| +... ..
T Consensus 31 ~~~~~il~~vs~~i~~G-e~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~ 109 (236)
T cd03267 31 YREVEALKGISFTIEKG-EIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWD 109 (236)
T ss_pred cCCeeeeeceeEEEcCC-CEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccCCC
Confidence 344444 999999999 99999999999999999999 665321 11223555 3221 11
Q ss_pred chHH---------------------HHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHH
Q 004609 392 LPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEG 449 (742)
Q Consensus 392 i~~~---------------------d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLDEp~~glDp~~~ 449 (742)
++.. ..++..+|+.+..++.+.+||+||+ |+.++++++.+|+++||||||+|||+...
T Consensus 110 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~ 189 (236)
T cd03267 110 LPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQ 189 (236)
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHH
Confidence 1111 2235556777778889999999999 89999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEE
Q 004609 450 VALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF 493 (742)
Q Consensus 450 ~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~ 493 (742)
..+...+.+...+.+.++|++||+.+ +..++++++.+.+|.+..
T Consensus 190 ~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 234 (236)
T cd03267 190 ENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLY 234 (236)
T ss_pred HHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEe
Confidence 99999555443445789999999988 567899999999998754
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.9e-24 Score=244.05 Aligned_cols=167 Identities=17% Similarity=0.199 Sum_probs=135.4
Q ss_pred cEEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh-------------------h-hhce
Q 004609 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------S-KAGL 382 (742)
Q Consensus 326 ~l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m-------------------a-q~G~ 382 (742)
.++++|+++.|+++.+ ++||++.+| ++++|+||||||||||||+| |++.+- . +...
T Consensus 5 ~l~~~~l~~~~~~~~il~~vs~~i~~G-e~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~ 83 (510)
T PRK09700 5 YISMAGIGKSFGPVHALKSVNLTVYPG-EIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIG 83 (510)
T ss_pred eEEEeeeEEEcCCeEEeeeeeEEEcCC-cEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeE
Confidence 4788999999987665 999999999 99999999999999999999 665320 1 1134
Q ss_pred eecCCCC--CCchH----------------------------HHHHHHHcCCccccccccccchHHHH-HHHHHHHhcCC
Q 004609 383 YLPAKNH--PRLPW----------------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSR 431 (742)
Q Consensus 383 ~vPa~~~--~~i~~----------------------------~d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~ 431 (742)
|+|+... ..+++ +..++..+|+.+..++.+++|||||+ |+.++++++.+
T Consensus 84 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~~ 163 (510)
T PRK09700 84 IIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLD 163 (510)
T ss_pred EEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcC
Confidence 6666531 01111 22346667777778899999999999 89999999999
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 432 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 432 ~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
|++|||||||+|||+.....+.. ++..+.+.|.|+|++||+.+ +..+|++++.+.+|.+.+.
T Consensus 164 p~lllLDEPt~~LD~~~~~~l~~-~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~ 226 (510)
T PRK09700 164 AKVIIMDEPTSSLTNKEVDYLFL-IMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCS 226 (510)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeee
Confidence 99999999999999999999998 55556666889999999987 5679999999999988654
|
|
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.4e-24 Score=209.88 Aligned_cols=150 Identities=21% Similarity=0.307 Sum_probs=111.3
Q ss_pred EEEeeeeeecCCc--ee--cccccccCCceEEEEEeCCCCCcchHHhhHHhhhhhhhhceeecCCCCCCchH-----H--
Q 004609 327 MTVGSLSKGISDF--PV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPW-----F-- 395 (742)
Q Consensus 327 l~~~nl~~~y~~~--~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~lGli~~maq~G~~vPa~~~~~i~~-----~-- 395 (742)
++++|+++.|++. .+ ++||++.+| ++++|+||||+|||||||++ +|...|.+|...+.. +
T Consensus 1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G-~~~~l~G~nGsGKstLl~~i--------~G~~~~~~G~i~~~g~~~~~~~~ 71 (171)
T cd03228 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPG-EKVAIVGPSGSGKSTLLKLL--------LRLYDPTSGEILIDGVDLRDLDL 71 (171)
T ss_pred CEEEEEEEEcCCCCcccccceEEEEcCC-CEEEEECCCCCCHHHHHHHH--------HcCCCCCCCEEEECCEEhhhcCH
Confidence 3578999999764 34 999999999 99999999999999999999 665555554221110 0
Q ss_pred HHHHHHcCC---c-----cccccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcE
Q 004609 396 DLILADIGD---H-----QSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGL 466 (742)
Q Consensus 396 d~il~~ig~---~-----~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~ 466 (742)
......++. . .++..++ ||+||+ |+.++++++.+|+++||||||+|||+.....+.. ++..+.+ +.+
T Consensus 72 ~~~~~~i~~~~~~~~~~~~t~~e~l--LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~-~l~~~~~-~~t 147 (171)
T cd03228 72 ESLRKNIAYVPQDPFLFSGTIRENI--LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILE-ALRALAK-GKT 147 (171)
T ss_pred HHHHhhEEEEcCCchhccchHHHHh--hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHH-HHHHhcC-CCE
Confidence 001111110 0 0111111 999999 8999999999999999999999999999999998 4455554 689
Q ss_pred EEEEecChhhhhhcccccceecc
Q 004609 467 AVVTTHYADLSCLKDKDTRFENA 489 (742)
Q Consensus 467 vlitTH~~~l~~~a~~~~~i~~g 489 (742)
+|++||+.+....|++...+.+|
T Consensus 148 ii~~sh~~~~~~~~d~~~~l~~g 170 (171)
T cd03228 148 VIVIAHRLSTIRDADRIIVLDDG 170 (171)
T ss_pred EEEEecCHHHHHhCCEEEEEcCC
Confidence 99999998855558888777765
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.4e-23 Score=220.02 Aligned_cols=167 Identities=16% Similarity=0.257 Sum_probs=130.1
Q ss_pred CcEEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhh--h--------------h--------
Q 004609 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLAS--L--------------M-------- 377 (742)
Q Consensus 325 ~~l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~--~--------------m-------- 377 (742)
+.++++|+++.|++..+ ++||++.+| ++++|+|||||||||||++| |+.. + .
T Consensus 3 ~~l~~~nl~~~~~~~~~l~~isl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~ 81 (252)
T PRK14256 3 NKVKLEQLNVHFGKNHAVKDVSMDFPEN-SVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPV 81 (252)
T ss_pred cEEEEEEEEEEeCCeeEEecceEEEcCC-CEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChH
Confidence 56899999999987655 999999999 99999999999999999999 6642 1 0
Q ss_pred --hhhceeecCCCCC--CchHHH----------------------HHHHHcCCc----cccccccccchHHHH-HHHHHH
Q 004609 378 --SKAGLYLPAKNHP--RLPWFD----------------------LILADIGDH----QSLEQNLSTFSGHIS-RIVDIL 426 (742)
Q Consensus 378 --aq~G~~vPa~~~~--~i~~~d----------------------~il~~ig~~----~~~~~~lstfSgg~k-rl~~~~ 426 (742)
.+...|+|+.... .+++.+ .++..+|+. +..++.+.+||+||+ |+++++
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~lar 161 (252)
T PRK14256 82 SIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIAR 161 (252)
T ss_pred HhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHH
Confidence 1113456665321 112222 223344543 245677899999999 899999
Q ss_pred HhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 427 ELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 427 ~l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
+++.+|+++||||||+|+|+.....+.. ++..+.+ +.|+|++||+.+ +..+|++...+.+|.+..+
T Consensus 162 al~~~p~llllDEP~~gLD~~~~~~l~~-~l~~~~~-~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 228 (252)
T PRK14256 162 TIAVKPEVILMDEPASALDPISTLKIEE-LIEELKE-KYTIIIVTHNMQQAARVSDYTAFFYMGDLVEC 228 (252)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHHh-CCcEEEEECCHHHHHhhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999998 4555655 579999999987 4579999999999988654
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.3e-23 Score=219.75 Aligned_cols=167 Identities=23% Similarity=0.304 Sum_probs=129.3
Q ss_pred CcEEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhh-------------------------
Q 004609 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL------------------------- 376 (742)
Q Consensus 325 ~~l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~------------------------- 376 (742)
|.+.++||++.|+++.+ ++||++.+| ++++|+|||||||||||++| |+..+
T Consensus 2 ~~l~~~~l~~~~~~~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 80 (250)
T PRK14240 2 GKISVKDLDLFYGDFQALKKINLDIEEN-QVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVN 80 (250)
T ss_pred CeEEEEEEEEEECCceeeecceEEEcCC-CEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchH
Confidence 35789999999987655 999999999 99999999999999999999 65321
Q ss_pred -hhhhceeecCCCCC-CchHHHHH----------------------HHHcCCc----cccccccccchHHHH-HHHHHHH
Q 004609 377 -MSKAGLYLPAKNHP-RLPWFDLI----------------------LADIGDH----QSLEQNLSTFSGHIS-RIVDILE 427 (742)
Q Consensus 377 -maq~G~~vPa~~~~-~i~~~d~i----------------------l~~ig~~----~~~~~~lstfSgg~k-rl~~~~~ 427 (742)
..+...|+|+.... ..+.++++ +..++.. ...++.+.+|||||+ |++++++
T Consensus 81 ~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lara 160 (250)
T PRK14240 81 QLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARA 160 (250)
T ss_pred HHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHH
Confidence 01112466665321 12333332 2223321 234678899999999 8999999
Q ss_pred hcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 428 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 428 l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
++.+|+++||||||+|||+.....+...+. .+.+ +.|+|++||+.+ +..+++++..+.+|.+..+
T Consensus 161 l~~~p~llllDEP~~~LD~~~~~~l~~~l~-~~~~-~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~ 226 (250)
T PRK14240 161 LAVEPEVLLMDEPTSALDPISTLKIEELIQ-ELKK-DYTIVIVTHNMQQASRISDKTAFFLNGEIVEF 226 (250)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHH-HHhc-CCeEEEEEeCHHHHHhhCCEEEEEECCEEEEe
Confidence 999999999999999999999999988554 4554 689999999988 6678999999999988755
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.4e-24 Score=221.89 Aligned_cols=167 Identities=22% Similarity=0.307 Sum_probs=129.9
Q ss_pred CcEEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh------------------------
Q 004609 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------------ 377 (742)
Q Consensus 325 ~~l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m------------------------ 377 (742)
..++++|+++.|++..+ ++||++.+| ++++|+||||||||||||+| |++.+-
T Consensus 6 ~~l~~~~l~~~~~~~~il~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 84 (254)
T PRK14273 6 AIIETENLNLFYTDFKALNNINIKILKN-SITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDIL 84 (254)
T ss_pred ceEEEeeeEEEeCCceeecceeeEEcCC-CEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHH
Confidence 46889999999987655 999999999 99999999999999999999 665420
Q ss_pred --hhhceeecCCCCC-CchHHHHH----------------------HHHcCC----ccccccccccchHHHH-HHHHHHH
Q 004609 378 --SKAGLYLPAKNHP-RLPWFDLI----------------------LADIGD----HQSLEQNLSTFSGHIS-RIVDILE 427 (742)
Q Consensus 378 --aq~G~~vPa~~~~-~i~~~d~i----------------------l~~ig~----~~~~~~~lstfSgg~k-rl~~~~~ 427 (742)
.+...|+|++... .+++++++ +..+++ .+..++.+++|||||+ |++++++
T Consensus 85 ~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~lara 164 (254)
T PRK14273 85 ELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIART 164 (254)
T ss_pred HHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHH
Confidence 0112355554311 12233322 223333 2345778899999999 8999999
Q ss_pred hcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 428 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 428 l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
++.+|+++||||||+|||+.....+...+. .+.+ +.|+|++||+.+ +..++++++.+.+|.+..+
T Consensus 165 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~-~~~~-~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~ 230 (254)
T PRK14273 165 LAIEPNVILMDEPTSALDPISTGKIEELII-NLKE-SYTIIIVTHNMQQAGRISDRTAFFLNGCIEEE 230 (254)
T ss_pred HHcCCCEEEEeCCCcccCHHHHHHHHHHHH-HHhc-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999998555 4554 689999999988 4678999999999988654
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-23 Score=219.37 Aligned_cols=166 Identities=20% Similarity=0.231 Sum_probs=128.6
Q ss_pred cEEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhh---hh-----------------------
Q 004609 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLA---SL----------------------- 376 (742)
Q Consensus 326 ~l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli---~~----------------------- 376 (742)
.+.++|+++.|+++.+ ++||++.+| ++++|+||||||||||||+| |+. ..
T Consensus 3 ~l~~~~~~~~~~~~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 81 (250)
T PRK14245 3 KIDARDVNFWYGDFHALKGISMEIEEK-SVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDE 81 (250)
T ss_pred EEEEEEEEEEECCEeEEeeeeEEEeCC-CEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHH
Confidence 3678999999987655 999999999 99999999999999999999 542 10
Q ss_pred hhhhceeecCCCCCC-chHH----------------------HHHHHHcCCc----cccccccccchHHHH-HHHHHHHh
Q 004609 377 MSKAGLYLPAKNHPR-LPWF----------------------DLILADIGDH----QSLEQNLSTFSGHIS-RIVDILEL 428 (742)
Q Consensus 377 maq~G~~vPa~~~~~-i~~~----------------------d~il~~ig~~----~~~~~~lstfSgg~k-rl~~~~~l 428 (742)
..+...|+|+..... .++. +.++..+|+. +.+++.+.+|||||+ |+++++++
T Consensus 82 ~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral 161 (250)
T PRK14245 82 LRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAM 161 (250)
T ss_pred HhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHH
Confidence 011234566653110 1111 2234445553 245778899999999 89999999
Q ss_pred cCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 429 VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 429 ~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
+.+|+++||||||+|||+.....+...+. .+.+ +.++|++||+.+ +..+|++++.+.+|.+...
T Consensus 162 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~-~~~~-~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~ 226 (250)
T PRK14245 162 AVSPSVLLMDEPASALDPISTAKVEELIH-ELKK-DYTIVIVTHNMQQAARVSDKTAFFYMGEMVEY 226 (250)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHH-HHhc-CCeEEEEeCCHHHHHhhCCEEEEEECCEEEEE
Confidence 99999999999999999999999998554 4554 689999999987 5688999999999988654
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.7e-23 Score=220.19 Aligned_cols=167 Identities=20% Similarity=0.240 Sum_probs=129.7
Q ss_pred CcEEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhh------h------------------
Q 004609 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL------M------------------ 377 (742)
Q Consensus 325 ~~l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~------m------------------ 377 (742)
..+.++|+++.|+++.+ ++||++.+| ++++|+|||||||||||++| |++.+ -
T Consensus 11 ~~l~i~~l~~~~~~~~~l~~vs~~i~~G-e~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~ 89 (259)
T PRK14274 11 EVYQINGMNLWYGQHHALKNINLSIPEN-EVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLV 89 (259)
T ss_pred ceEEEeeEEEEECCeeeEEeeEEEEcCC-CEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHH
Confidence 46789999999987655 999999999 99999999999999999999 66531 0
Q ss_pred --hhhceeecCCCCC-CchHHH----------------------HHHHHcCCc----cccccccccchHHHH-HHHHHHH
Q 004609 378 --SKAGLYLPAKNHP-RLPWFD----------------------LILADIGDH----QSLEQNLSTFSGHIS-RIVDILE 427 (742)
Q Consensus 378 --aq~G~~vPa~~~~-~i~~~d----------------------~il~~ig~~----~~~~~~lstfSgg~k-rl~~~~~ 427 (742)
.+...|+|+.... ...+++ .++..+++. +.+++.+++|||||+ |++++++
T Consensus 90 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~lara 169 (259)
T PRK14274 90 ELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARA 169 (259)
T ss_pred HHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHH
Confidence 0112355554311 001111 223345543 245788899999999 8999999
Q ss_pred hcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 428 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 428 l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
++.+|+++||||||+|||+.....+... +..+.+ +.|+|++||+.+ +..+|++++.+.+|.+..+
T Consensus 170 l~~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~-~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~ 235 (259)
T PRK14274 170 LATNPDVLLMDEPTSALDPVSTRKIEEL-ILKLKE-KYTIVIVTHNMQQAARVSDQTAFFYMGELVEC 235 (259)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHH-HHHHhc-CCEEEEEEcCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999884 445555 689999999987 5679999999999988654
|
|
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.3e-23 Score=211.53 Aligned_cols=158 Identities=20% Similarity=0.224 Sum_probs=120.2
Q ss_pred cEEEeeeeeecCC----cee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhh-----------------hhhhc
Q 004609 326 EMTVGSLSKGISD----FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-----------------MSKAG 381 (742)
Q Consensus 326 ~l~~~nl~~~y~~----~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~-----------------maq~G 381 (742)
.+.++|+++.|++ +.+ ++||++.+| ++++|+||||+|||||||++ |+..+ .....
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~G-e~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i 81 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPG-TLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRST 81 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCC-cEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhce
Confidence 5788999999964 444 999999999 99999999999999999999 44210 01112
Q ss_pred eeecCCCC--CCchHHHHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHH
Q 004609 382 LYLPAKNH--PRLPWFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQ 458 (742)
Q Consensus 382 ~~vPa~~~--~~i~~~d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLDEp~~glDp~~~~aL~~all~ 458 (742)
.|+|+... ..+++.+++.... ....|||||+ |+.++++++.+|+++||||||+|+|+.....+.. ++.
T Consensus 82 ~~~~q~~~~~~~~tv~~~l~~~~--------~~~~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~-~l~ 152 (192)
T cd03232 82 GYVEQQDVHSPNLTVREALRFSA--------LLRGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVR-FLK 152 (192)
T ss_pred EEecccCccccCCcHHHHHHHHH--------HHhcCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHH-HHH
Confidence 24444321 1123344432110 0118999999 8999999999999999999999999999999998 455
Q ss_pred HHhcCCcEEEEEecChh--hhhhcccccceec-ceEEE
Q 004609 459 YLRDRVGLAVVTTHYAD--LSCLKDKDTRFEN-AATEF 493 (742)
Q Consensus 459 ~l~~~~~~vlitTH~~~--l~~~a~~~~~i~~-g~~~~ 493 (742)
.+.+.+.|+|++||+.+ +..++++++.+.+ |.+.+
T Consensus 153 ~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~ 190 (192)
T cd03232 153 KLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVY 190 (192)
T ss_pred HHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEe
Confidence 56666889999999986 4678999999988 88765
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.8e-24 Score=224.44 Aligned_cols=167 Identities=16% Similarity=0.122 Sum_probs=131.7
Q ss_pred cEEEeeeeeecCC---cee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh-------------------hhh
Q 004609 326 EMTVGSLSKGISD---FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKA 380 (742)
Q Consensus 326 ~l~~~nl~~~y~~---~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m-------------------aq~ 380 (742)
.+.++||++.|++ ..+ ++||++.+| ++++|+||||+||||||++| |+..+. .+.
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~G-e~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 82 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKG-EWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRK 82 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCC-CEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcc
Confidence 4678999999974 223 999999999 99999999999999999999 555321 112
Q ss_pred ceeecCCCC---CCchHH---------------------HHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEE
Q 004609 381 GLYLPAKNH---PRLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLV 435 (742)
Q Consensus 381 G~~vPa~~~---~~i~~~---------------------d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~Ll 435 (742)
..|+|+... ....+. +.++..+|+.+..++++.+|||||+ |+.++++++.+|+++
T Consensus 83 i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~ll 162 (277)
T PRK13642 83 IGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEII 162 (277)
T ss_pred eEEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 246666531 111222 2334556777778889999999999 899999999999999
Q ss_pred EEcCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhhcccccceecceEEEe
Q 004609 436 LIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 436 LLDEp~~glDp~~~~aL~~all~~l~~-~~~~vlitTH~~~l~~~a~~~~~i~~g~~~~~ 494 (742)
||||||+|||+.....+...+ ..+.+ .|.|+|++||+.+....|+++..+.+|.+...
T Consensus 163 llDEPt~~LD~~~~~~l~~~l-~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~ 221 (277)
T PRK13642 163 ILDESTSMLDPTGRQEIMRVI-HEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKE 221 (277)
T ss_pred EEeCCcccCCHHHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999844 45555 48899999999886667999999999987654
|
|
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-23 Score=211.98 Aligned_cols=158 Identities=24% Similarity=0.323 Sum_probs=119.6
Q ss_pred cEEEeeeeeecCC------cee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhh--hhh----------------h
Q 004609 326 EMTVGSLSKGISD------FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLA--SLM----------------S 378 (742)
Q Consensus 326 ~l~~~nl~~~y~~------~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli--~~m----------------a 378 (742)
.+.++|+++.|++ .++ ++||++.+| ++++|+||||+|||||||+| |+. .+. .
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~G-e~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~ 81 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPG-ELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFR 81 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhh
Confidence 4688999999975 444 999999999 99999999999999999999 444 221 0
Q ss_pred hhceeecCCCC--CCchHHHHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHH
Q 004609 379 KAGLYLPAKNH--PRLPWFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATS 455 (742)
Q Consensus 379 q~G~~vPa~~~--~~i~~~d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLDEp~~glDp~~~~aL~~a 455 (742)
....|+|+... ..+++.+++... .....||+||+ |+.++++++.+|+++||||||+|||+.....+..
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~~i~~~--------~~~~~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~- 152 (194)
T cd03213 82 KIIGYVPQDDILHPTLTVRETLMFA--------AKLRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMS- 152 (194)
T ss_pred heEEEccCcccCCCCCcHHHHHHHH--------HHhccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHH-
Confidence 11123333321 112333333210 01128999999 8999999999999999999999999999999998
Q ss_pred HHHHHhcCCcEEEEEecChh--hhhhcccccceecceEEE
Q 004609 456 ILQYLRDRVGLAVVTTHYAD--LSCLKDKDTRFENAATEF 493 (742)
Q Consensus 456 ll~~l~~~~~~vlitTH~~~--l~~~a~~~~~i~~g~~~~ 493 (742)
++..+.+++.|+|++||+.+ +..+++++..+.+|.+..
T Consensus 153 ~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~ 192 (194)
T cd03213 153 LLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIY 192 (194)
T ss_pred HHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEe
Confidence 44556666889999999974 567899999999998753
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.7e-23 Score=219.04 Aligned_cols=166 Identities=16% Similarity=0.214 Sum_probs=128.6
Q ss_pred cEEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhh--h------------------------
Q 004609 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLAS--L------------------------ 376 (742)
Q Consensus 326 ~l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~--~------------------------ 376 (742)
.+.++|+++.|+++.+ ++||++.+| ++++|+|||||||||||++| |+.. +
T Consensus 5 ~l~~~~l~~~~~~~~~l~~~s~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 83 (252)
T PRK14239 5 ILQVSDLSVYYNKKKALNSVSLDFYPN-EITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVD 83 (252)
T ss_pred eEEEEeeEEEECCeeeeeeeeEEEcCC-cEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHh
Confidence 4788999999987655 999999999 99999999999999999999 6521 1
Q ss_pred hhhhceeecCCCCC-CchHHHHH----------------------HHHcCCc----cccccccccchHHHH-HHHHHHHh
Q 004609 377 MSKAGLYLPAKNHP-RLPWFDLI----------------------LADIGDH----QSLEQNLSTFSGHIS-RIVDILEL 428 (742)
Q Consensus 377 maq~G~~vPa~~~~-~i~~~d~i----------------------l~~ig~~----~~~~~~lstfSgg~k-rl~~~~~l 428 (742)
+.+...|+|+.... ..++.+++ +..++.. +..++.+.+||+||+ |+++++++
T Consensus 84 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral 163 (252)
T PRK14239 84 LRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVL 163 (252)
T ss_pred hhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHH
Confidence 01123456665321 12333332 2223321 235678899999999 89999999
Q ss_pred cCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 429 VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 429 ~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
+.+|+++||||||+|||+.....+...+ ..+.+ +.|+|++||+.+ +..+|+++..+.+|.+...
T Consensus 164 ~~~p~llllDEPt~~LD~~~~~~l~~~l-~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~ 228 (252)
T PRK14239 164 ATSPKIILLDEPTSALDPISAGKIEETL-LGLKD-DYTMLLVTRSMQQASRISDRTGFFLDGDLIEY 228 (252)
T ss_pred hcCCCEEEEcCCccccCHHHHHHHHHHH-HHHhh-CCeEEEEECCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999844 45554 589999999987 6679999999999988654
|
|
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.6e-24 Score=219.12 Aligned_cols=164 Identities=15% Similarity=0.144 Sum_probs=122.9
Q ss_pred EEeeeeeecC-Ccee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh-------------------hhhceee
Q 004609 328 TVGSLSKGIS-DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAGLYL 384 (742)
Q Consensus 328 ~~~nl~~~y~-~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m-------------------aq~G~~v 384 (742)
+++|+++.|+ +..+ ++||++.+| ++++|+||||+||||||++| |+..+- .+...|+
T Consensus 2 ~~~~l~~~~~~~~~~l~~i~~~i~~G-e~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~ 80 (236)
T cd03253 2 EFENVTFAYDPGRPVLKDVSFTIPAG-KKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVV 80 (236)
T ss_pred EEEEEEEEeCCCCceeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEE
Confidence 5789999995 3434 999999999 99999999999999999999 555321 1112355
Q ss_pred cCCCC-CCchHHHHH---------------HHHcCC-----------ccccccccccchHHHH-HHHHHHHhcCCCcEEE
Q 004609 385 PAKNH-PRLPWFDLI---------------LADIGD-----------HQSLEQNLSTFSGHIS-RIVDILELVSRESLVL 436 (742)
Q Consensus 385 Pa~~~-~~i~~~d~i---------------l~~ig~-----------~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlL 436 (742)
|+... ...++.+++ +...+. ...+++.+.+||+||+ |++++++++.+|+++|
T Consensus 81 ~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~lll 160 (236)
T cd03253 81 PQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILL 160 (236)
T ss_pred CCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEE
Confidence 55431 011222221 111122 2223456789999999 8999999999999999
Q ss_pred EcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcccccceecceEEEe
Q 004609 437 IDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 437 LDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~l~~~a~~~~~i~~g~~~~~ 494 (742)
|||||+|||+.....+.. ++..+.+ +.++|++||+.+....|++.+.+.+|.+...
T Consensus 161 lDEP~~~LD~~~~~~l~~-~l~~~~~-~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~ 216 (236)
T cd03253 161 LDEATSALDTHTEREIQA-ALRDVSK-GRTTIVIAHRLSTIVNADKIIVLKDGRIVER 216 (236)
T ss_pred EeCCcccCCHHHHHHHHH-HHHHhcC-CCEEEEEcCCHHHHHhCCEEEEEECCEEEee
Confidence 999999999999999998 4455566 8899999999886667999999999988654
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.2e-24 Score=215.14 Aligned_cols=162 Identities=19% Similarity=0.161 Sum_probs=120.2
Q ss_pred EEEeeeeeecCCc-----ee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhhhh------hceeecCCCC-CC
Q 004609 327 MTVGSLSKGISDF-----PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMSK------AGLYLPAKNH-PR 391 (742)
Q Consensus 327 l~~~nl~~~y~~~-----~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~maq------~G~~vPa~~~-~~ 391 (742)
++++||++.|++. .+ ++||++++| ++++|+||||+||||||++| |+..+-.- .-.|+|+... ..
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G-~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g~i~~~~q~~~l~~ 79 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKG-ELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIAYVSQEPWIQN 79 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCC-CEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcCEEEEEecCchhcc
Confidence 3578999999763 34 999999999 99999999999999999999 54432100 0135555531 01
Q ss_pred chHHHHH--------------HHHcCC-----------ccccccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCC
Q 004609 392 LPWFDLI--------------LADIGD-----------HQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTD 445 (742)
Q Consensus 392 i~~~d~i--------------l~~ig~-----------~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLDEp~~glD 445 (742)
.+.++++ +..++. ...+......||+||+ |++++++++.+|+++||||||+|||
T Consensus 80 ~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD 159 (204)
T cd03250 80 GTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVD 159 (204)
T ss_pred CcHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCC
Confidence 1222221 222222 2234556789999999 9999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcccccceecc
Q 004609 446 PSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENA 489 (742)
Q Consensus 446 p~~~~aL~~all~~l~~~~~~vlitTH~~~l~~~a~~~~~i~~g 489 (742)
+.....+...++..+.+.+.|+|++||+.+....++++..+.+|
T Consensus 160 ~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G 203 (204)
T cd03250 160 AHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNG 203 (204)
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCC
Confidence 99999888766665555588999999998865558888777765
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-23 Score=222.96 Aligned_cols=168 Identities=17% Similarity=0.201 Sum_probs=131.2
Q ss_pred CCcEEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhh-----h------------------
Q 004609 324 NSEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-----M------------------ 377 (742)
Q Consensus 324 ~~~l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~-----m------------------ 377 (742)
.+.+.++||++.|++..+ ++||++.+| ++++|+||||||||||||+| |++.+ -
T Consensus 17 ~~~l~~~nl~~~~~~~~il~~isl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~ 95 (267)
T PRK14235 17 EIKMRARDVSVFYGEKQALFDVDLDIPEK-TVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDV 95 (267)
T ss_pred CceEEEEeEEEEECCEEEEEEEEEEEcCC-CEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccch
Confidence 357899999999987655 999999999 99999999999999999999 76532 0
Q ss_pred ---hhhceeecCCCCCC-chHHH-----------------------HHHHHcCCcc----ccccccccchHHHH-HHHHH
Q 004609 378 ---SKAGLYLPAKNHPR-LPWFD-----------------------LILADIGDHQ----SLEQNLSTFSGHIS-RIVDI 425 (742)
Q Consensus 378 ---aq~G~~vPa~~~~~-i~~~d-----------------------~il~~ig~~~----~~~~~lstfSgg~k-rl~~~ 425 (742)
.+...|+|+..... .++++ .++..+|+.. .+++.+.+|||||+ |++++
T Consensus 96 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~la 175 (267)
T PRK14235 96 VELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIA 175 (267)
T ss_pred HHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHH
Confidence 11124566553110 12222 2344445532 35678899999999 89999
Q ss_pred HHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 426 LELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 426 ~~l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
++++.+|++|||||||+|||+.....+... +..+.+ +.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 176 ral~~~p~lllLDEPt~~LD~~~~~~l~~~-L~~l~~-~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~ 243 (267)
T PRK14235 176 RAIAVSPEVILMDEPCSALDPIATAKVEEL-IDELRQ-NYTIVIVTHSMQQAARVSQRTAFFHLGNLVEV 243 (267)
T ss_pred HHHHcCCCEEEEeCCCcCCCHHHHHHHHHH-HHHHhc-CCeEEEEEcCHHHHHhhCCEEEEEECCEEEEe
Confidence 999999999999999999999999999984 455555 689999999987 5578999999999988654
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1e-23 Score=229.33 Aligned_cols=168 Identities=15% Similarity=0.114 Sum_probs=132.8
Q ss_pred cEEEeeeeeecCC----------ce-e-cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh---------------
Q 004609 326 EMTVGSLSKGISD----------FP-V-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------- 377 (742)
Q Consensus 326 ~l~~~nl~~~y~~----------~~-v-~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m--------------- 377 (742)
.++++||++.|+. .. + ++||+|.+| ++++|+||||||||||+++| |++.+-
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~G-e~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~ 83 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERG-KTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKAD 83 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCC-CEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCC
Confidence 5789999999952 22 3 999999999 99999999999999999999 665320
Q ss_pred -------hhhceeecCCCC----CCchH----------------------HHHHHHHcCCc-cccccccccchHHHH-HH
Q 004609 378 -------SKAGLYLPAKNH----PRLPW----------------------FDLILADIGDH-QSLEQNLSTFSGHIS-RI 422 (742)
Q Consensus 378 -------aq~G~~vPa~~~----~~i~~----------------------~d~il~~ig~~-~~~~~~lstfSgg~k-rl 422 (742)
.+...++|++.. ..+.+ +..++..+|+. +.+++.+++|||||+ |+
T Consensus 84 ~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv 163 (327)
T PRK11308 84 PEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRI 163 (327)
T ss_pred HHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHH
Confidence 112346776641 11111 23446677775 467899999999999 99
Q ss_pred HHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChhhh-hhcccccceecceEEEe
Q 004609 423 VDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLS-CLKDKDTRFENAATEFS 494 (742)
Q Consensus 423 ~~~~~l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~l~-~~a~~~~~i~~g~~~~~ 494 (742)
+++++++.+|++||+||||+|||+.....+...+.+...+.|.++|++|||+.+. .+|+++..+.+|.+...
T Consensus 164 ~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive~ 236 (327)
T PRK11308 164 AIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEK 236 (327)
T ss_pred HHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999955544344588999999998855 68999999999988654
|
|
| >PRK13541 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.6e-24 Score=214.11 Aligned_cols=154 Identities=14% Similarity=0.183 Sum_probs=118.7
Q ss_pred EEEeeeeeecCCcee-cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh-------h--------hhceeecCCCC
Q 004609 327 MTVGSLSKGISDFPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------S--------KAGLYLPAKNH 389 (742)
Q Consensus 327 l~~~nl~~~y~~~~v-~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m-------a--------q~G~~vPa~~~ 389 (742)
+.++|++++|+++.+ ++||++.+| ++++|+|||||||||||++| |+..+- . +...|+|+...
T Consensus 2 l~~~~l~~~~~~~~l~~vs~~i~~G-e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~ 80 (195)
T PRK13541 2 LSLHQLQFNIEQKNLFDLSITFLPS-AITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHNLG 80 (195)
T ss_pred eEEEEeeEEECCcEEEEEEEEEcCC-cEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEEeccCCcC
Confidence 568899999987665 899999999 99999999999999999999 554321 0 01124444321
Q ss_pred C--CchHH----------------HHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHH
Q 004609 390 P--RLPWF----------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGV 450 (742)
Q Consensus 390 ~--~i~~~----------------d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLDEp~~glDp~~~~ 450 (742)
. ..++. ..++..++..+..++..+.||+||+ |+.++++++.+|+++||||||+|+|+....
T Consensus 81 ~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~ 160 (195)
T PRK13541 81 LKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRD 160 (195)
T ss_pred CCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHH
Confidence 1 11222 2334556777778899999999999 899999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEEecChhhhhhccc
Q 004609 451 ALATSILQYLRDRVGLAVVTTHYADLSCLKDK 482 (742)
Q Consensus 451 aL~~all~~l~~~~~~vlitTH~~~l~~~a~~ 482 (742)
.+...+ ....+.+.++|++||+.+....++.
T Consensus 161 ~l~~~l-~~~~~~~~tiii~sh~~~~i~~~~~ 191 (195)
T PRK13541 161 LLNNLI-VMKANSGGIVLLSSHLESSIKSAQI 191 (195)
T ss_pred HHHHHH-HHHHhCCCEEEEEeCCccccchhhe
Confidence 998844 4455668899999999875555543
|
|
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-23 Score=207.12 Aligned_cols=148 Identities=20% Similarity=0.240 Sum_probs=113.4
Q ss_pred EEeeeeeecCC-cee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhhh--------hhceeecCCCC-CCchH
Q 004609 328 TVGSLSKGISD-FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS--------KAGLYLPAKNH-PRLPW 394 (742)
Q Consensus 328 ~~~nl~~~y~~-~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~ma--------q~G~~vPa~~~-~~i~~ 394 (742)
+++|+++.|++ +.+ ++||++.+| ++++|+|||||||||||+++ |++.+-. +...|+|++.. ...+.
T Consensus 2 ~~~~~~~~~~~~~~~l~~i~l~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv 80 (166)
T cd03223 2 ELENLSLATPDGRVLLKDLSFEIKPG-DRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTL 80 (166)
T ss_pred EEEEEEEEcCCCCeeeecCeEEECCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccH
Confidence 57899999953 444 999999999 99999999999999999999 4443210 11134454431 11233
Q ss_pred HHHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecC
Q 004609 395 FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHY 473 (742)
Q Consensus 395 ~d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~ 473 (742)
.+++.. + ....||+||+ |+.++++++.+|+++||||||+|+|+.....+...+.+. +.++|++||+
T Consensus 81 ~~nl~~--~-------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsh~ 147 (166)
T cd03223 81 REQLIY--P-------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL----GITVISVGHR 147 (166)
T ss_pred HHHhhc--c-------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh----CCEEEEEeCC
Confidence 333321 0 5789999999 899999999999999999999999999999998855443 6899999999
Q ss_pred hhhhhhcccccceecc
Q 004609 474 ADLSCLKDKDTRFENA 489 (742)
Q Consensus 474 ~~l~~~a~~~~~i~~g 489 (742)
.++..++++.+.+.++
T Consensus 148 ~~~~~~~d~i~~l~~~ 163 (166)
T cd03223 148 PSLWKFHDRVLDLDGE 163 (166)
T ss_pred hhHHhhCCEEEEEcCC
Confidence 8877788888777654
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.7e-24 Score=238.28 Aligned_cols=165 Identities=15% Similarity=0.102 Sum_probs=129.1
Q ss_pred cEEEeeeeeecCCc---ee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhhhhhce--------eecCCC--C
Q 004609 326 EMTVGSLSKGISDF---PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMSKAGL--------YLPAKN--H 389 (742)
Q Consensus 326 ~l~~~nl~~~y~~~---~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~maq~G~--------~vPa~~--~ 389 (742)
.+.++||++.|++. .+ ++||++.+| ++++|+||||+||||||++| |++.+- .|. +++... .
T Consensus 21 mL~lknL~~~~~~~~~~~IL~nVSfsI~~G-EivgIiGpNGSGKSTLLkiLaGLl~P~--sGeI~I~G~~~~i~~~~~l~ 97 (549)
T PRK13545 21 FDKLKDLFFRSKDGEYHYALNNISFEVPEG-EIVGIIGLNGSGKSTLSNLIAGVTMPN--KGTVDIKGSAALIAISSGLN 97 (549)
T ss_pred eeEEEEEEEecCCCccceEEeeeEEEEeCC-CEEEEEcCCCCCHHHHHHHHhCCCCCC--ceEEEECCEeeeEEeccccC
Confidence 57789999999763 33 999999999 99999999999999999999 544321 110 000000 0
Q ss_pred CCchHH---------------------HHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHH
Q 004609 390 PRLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPS 447 (742)
Q Consensus 390 ~~i~~~---------------------d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLDEp~~glDp~ 447 (742)
..+++. +.++..+|+.+.+++.+++|||||+ |++++++++.+|++|||||||+|||+.
T Consensus 98 ~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~ 177 (549)
T PRK13545 98 GQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQT 177 (549)
T ss_pred CCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHH
Confidence 011111 2345567777788999999999999 899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 448 EGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 448 ~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
....+...+ ..+.+.|+|+|++||+.+ +..+|++++.+.+|.+...
T Consensus 178 sr~~LlelL-~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~ 224 (549)
T PRK13545 178 FTKKCLDKM-NEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEY 224 (549)
T ss_pred HHHHHHHHH-HHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence 999999854 456666889999999987 5678999999999988654
|
|
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-23 Score=209.80 Aligned_cols=141 Identities=23% Similarity=0.210 Sum_probs=111.7
Q ss_pred cEEEeeeeeecCCcee-cccccccCCceEEEEEeCCCCCcchHHhhHHhhhhhhhhceeecCCCCC--------------
Q 004609 326 EMTVGSLSKGISDFPV-PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHP-------------- 390 (742)
Q Consensus 326 ~l~~~nl~~~y~~~~v-~i~l~l~~g~~~~~ItGpNGsGKSTlLK~lGli~~maq~G~~vPa~~~~-------------- 390 (742)
.++++|+++.| .+ ++||++.+| ++++|+||||+|||||||+| +|.+.|..|..
T Consensus 4 ~l~~~~l~~~~---~l~~vs~~i~~G-~~~~i~G~nGsGKSTLl~~l--------~G~~~~~~G~i~~~g~~~~~~~~~~ 71 (182)
T cd03215 4 VLEVRGLSVKG---AVRDVSFEVRAG-EIVGIAGLVGNGQTELAEAL--------FGLRPPASGEITLDGKPVTRRSPRD 71 (182)
T ss_pred EEEEeccEEEe---eecceEEEEcCC-cEEEEECCCCCCHHHHHHHH--------hCCCCCCCceEEECCEECCccCHHH
Confidence 57889999999 34 999999999 99999999999999999999 44433333311
Q ss_pred --------------------CchHHHHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHH
Q 004609 391 --------------------RLPWFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEG 449 (742)
Q Consensus 391 --------------------~i~~~d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLDEp~~glDp~~~ 449 (742)
.++..+++... ..||+||+ |++++++++.+|+++||||||+|+|+...
T Consensus 72 ~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~-----------~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~ 140 (182)
T cd03215 72 AIRAGIAYVPEDRKREGLVLDLSVAENIALS-----------SLLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAK 140 (182)
T ss_pred HHhCCeEEecCCcccCcccCCCcHHHHHHHH-----------hhcCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHH
Confidence 11222222110 01999999 89999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecce
Q 004609 450 VALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAA 490 (742)
Q Consensus 450 ~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~ 490 (742)
..+...+. .+.+.+.++|++||+.+ +..+|++++.+.+|.
T Consensus 141 ~~l~~~l~-~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~ 181 (182)
T cd03215 141 AEIYRLIR-ELADAGKAVLLISSELDELLGLCDRILVMYEGR 181 (182)
T ss_pred HHHHHHHH-HHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCc
Confidence 99998554 55556889999999976 677899998888774
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.4e-24 Score=242.41 Aligned_cols=167 Identities=17% Similarity=0.174 Sum_probs=133.7
Q ss_pred cEEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh--------------------hhhce
Q 004609 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------SKAGL 382 (742)
Q Consensus 326 ~l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m--------------------aq~G~ 382 (742)
.++++|+++.|++..+ ++||++.+| ++++|+||||||||||||+| |++.+- .+.-.
T Consensus 4 ~l~~~~l~~~~~~~~il~~isl~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~ 82 (501)
T PRK11288 4 YLSFDGIGKTFPGVKALDDISFDCRAG-QVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVA 82 (501)
T ss_pred eEEEeeeEEEECCEEEEeeeeEEEeCC-cEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEE
Confidence 4678999999987655 999999999 99999999999999999999 665320 11123
Q ss_pred eecCCCC--CCchH------------------------HHHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEE
Q 004609 383 YLPAKNH--PRLPW------------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLV 435 (742)
Q Consensus 383 ~vPa~~~--~~i~~------------------------~d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~Ll 435 (742)
|+|+... ..+++ +..++..+|+....++.+++|||||+ |++++++++.+|+++
T Consensus 83 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~ll 162 (501)
T PRK11288 83 IIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVI 162 (501)
T ss_pred EEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCEE
Confidence 6666431 11111 22345666777677889999999999 899999999999999
Q ss_pred EEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 436 LIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 436 LLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
||||||+|||+.....+.. ++..+.+.|.++|++||+.+ +..+|++++.+.+|.+...
T Consensus 163 lLDEPt~~LD~~~~~~l~~-~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~ 221 (501)
T PRK11288 163 AFDEPTSSLSAREIEQLFR-VIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVAT 221 (501)
T ss_pred EEcCCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEee
Confidence 9999999999999999998 45556666889999999987 5678999999999987643
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.4e-23 Score=220.28 Aligned_cols=167 Identities=19% Similarity=0.235 Sum_probs=130.4
Q ss_pred CcEEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhh-------------------------
Q 004609 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL------------------------- 376 (742)
Q Consensus 325 ~~l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~------------------------- 376 (742)
..+.++|+++.|+++.+ ++||++.+| ++++|+||||||||||||+| |+..+
T Consensus 19 ~~l~~~nl~~~~~~~~il~~vsl~i~~G-e~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 97 (267)
T PRK14237 19 IALSTKDLHVYYGKKEAIKGIDMQFEKN-KITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVY 97 (267)
T ss_pred eEEEEeeEEEEECCeeeEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChH
Confidence 35678999999987665 999999999 99999999999999999999 66531
Q ss_pred -hhhhceeecCCCCC-CchHHHHH----------------------HHHcCCc----cccccccccchHHHH-HHHHHHH
Q 004609 377 -MSKAGLYLPAKNHP-RLPWFDLI----------------------LADIGDH----QSLEQNLSTFSGHIS-RIVDILE 427 (742)
Q Consensus 377 -maq~G~~vPa~~~~-~i~~~d~i----------------------l~~ig~~----~~~~~~lstfSgg~k-rl~~~~~ 427 (742)
..+...|+|+.... ..++.+++ +..+++. +.+++++.+||+||+ |++++++
T Consensus 98 ~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~lara 177 (267)
T PRK14237 98 EMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARA 177 (267)
T ss_pred HHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHH
Confidence 01123466665311 11222222 3344442 346788999999999 8999999
Q ss_pred hcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 428 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 428 l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
++.+|+++||||||+|||+.....+...+ ..+.+ +.++|++||+.+ +..+|+++..+.+|.+...
T Consensus 178 l~~~p~lllLDEPt~~LD~~~~~~l~~~l-~~~~~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~ 243 (267)
T PRK14237 178 IAVKPDILLMDEPASALDPISTMQLEETM-FELKK-NYTIIIVTHNMQQAARASDYTAFFYLGDLIEY 243 (267)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHH-HHHhc-CCEEEEEecCHHHHHHhcCEEEEEECCEEEEe
Confidence 99999999999999999999999999844 45554 689999999987 5679999999999988654
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.4e-23 Score=217.87 Aligned_cols=166 Identities=17% Similarity=0.170 Sum_probs=128.9
Q ss_pred cEEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhh--------------------------
Q 004609 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------------- 376 (742)
Q Consensus 326 ~l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~-------------------------- 376 (742)
.++++|+++.|++..+ ++||++.+| ++++|+||||+||||||++| |+..+
T Consensus 3 ~l~~~~l~~~~~~~~~l~~i~~~i~~G-e~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~ 81 (250)
T PRK14262 3 IIEIENFSAYYGEKKAVKNVTMKIFKN-QITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTE 81 (250)
T ss_pred eEEEEeeEEEeCCceeEeeeeEeecCC-CEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHH
Confidence 3678999999987665 999999999 99999999999999999999 65431
Q ss_pred hhhhceeecCCCC-CCchHHHHH----------------------HHHcCCc----cccccccccchHHHH-HHHHHHHh
Q 004609 377 MSKAGLYLPAKNH-PRLPWFDLI----------------------LADIGDH----QSLEQNLSTFSGHIS-RIVDILEL 428 (742)
Q Consensus 377 maq~G~~vPa~~~-~~i~~~d~i----------------------l~~ig~~----~~~~~~lstfSgg~k-rl~~~~~l 428 (742)
..+...|+|+... ...+..+++ +..+|.. ...++.+.+||+||+ |+++++++
T Consensus 82 ~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al 161 (250)
T PRK14262 82 YRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARAL 161 (250)
T ss_pred hhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHH
Confidence 0122345565431 112222222 2233432 235778899999999 89999999
Q ss_pred cCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 429 VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 429 ~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
+.+|+++||||||+|||+.....+...+.+ +.+ +.|+|++||+.+ +..++++++.+.+|.+...
T Consensus 162 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~-~~~-~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~ 226 (250)
T PRK14262 162 AVEPEVILLDEPTSALDPIATQRIEKLLEE-LSE-NYTIVIVTHNIGQAIRIADYIAFMYRGELIEY 226 (250)
T ss_pred hCCCCEEEEeCCccccCHHHHHHHHHHHHH-Hhc-CcEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999985554 555 689999999988 6789999999999988754
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-23 Score=219.26 Aligned_cols=165 Identities=17% Similarity=0.158 Sum_probs=129.7
Q ss_pred EEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhh----------------------hhhhc
Q 004609 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL----------------------MSKAG 381 (742)
Q Consensus 327 l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~----------------------maq~G 381 (742)
++++|+++.|++..+ ++||++.+| ++++|+||||+|||||||+| |++.. ..+..
T Consensus 3 ~~~~~l~~~~~~~~~l~~isl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i 81 (246)
T PRK14269 3 AKTTNLNLFYGKKQALFDINMQIEQN-KITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNV 81 (246)
T ss_pred eeeeeeEEEECCEeeeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhE
Confidence 578999999987655 999999999 99999999999999999999 66421 01122
Q ss_pred eeecCCCCC-CchH-----------------------HHHHHHHcCCc----cccccccccchHHHH-HHHHHHHhcCCC
Q 004609 382 LYLPAKNHP-RLPW-----------------------FDLILADIGDH----QSLEQNLSTFSGHIS-RIVDILELVSRE 432 (742)
Q Consensus 382 ~~vPa~~~~-~i~~-----------------------~d~il~~ig~~----~~~~~~lstfSgg~k-rl~~~~~l~~~~ 432 (742)
.|+|+.... ..++ +..++..+++. +..++.++.||+||+ |++++++++.+|
T Consensus 82 ~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p 161 (246)
T PRK14269 82 GMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKP 161 (246)
T ss_pred EEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence 466665311 0111 12345556663 345778899999999 899999999999
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 433 SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 433 ~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
+++||||||+|||+.....+...+.+ +.+ +.|+|++||+.+ +..+++++..+.+|.+...
T Consensus 162 ~lllLDEP~~~LD~~~~~~l~~~l~~-~~~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~ 222 (246)
T PRK14269 162 KLLLLDEPTSALDPISSGVIEELLKE-LSH-NLSMIMVTHNMQQGKRVADYTAFFHLGELIEF 222 (246)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHH-HhC-CCEEEEEecCHHHHHhhCcEEEEEECCEEEEE
Confidence 99999999999999999999885544 554 789999999988 6679999999999988654
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-23 Score=228.82 Aligned_cols=167 Identities=17% Similarity=0.160 Sum_probs=131.7
Q ss_pred cEEEeeeeeecCC-------------ce-e-cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhh-------------
Q 004609 326 EMTVGSLSKGISD-------------FP-V-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL------------- 376 (742)
Q Consensus 326 ~l~~~nl~~~y~~-------------~~-v-~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~------------- 376 (742)
.++++||++.|+. .. + ++||+|.+| ++++|+||||||||||+|+| |++.+
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~G-e~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~ 86 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEG-ETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLL 86 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCC-CEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECC
Confidence 5788999999952 22 3 999999999 99999999999999999999 66532
Q ss_pred ---------hhhhceeecCCCC----CCchHHH-----------------------HHHHHcCCc-cccccccccchHHH
Q 004609 377 ---------MSKAGLYLPAKNH----PRLPWFD-----------------------LILADIGDH-QSLEQNLSTFSGHI 419 (742)
Q Consensus 377 ---------maq~G~~vPa~~~----~~i~~~d-----------------------~il~~ig~~-~~~~~~lstfSgg~ 419 (742)
......|+|++.. ..+.+.+ .++..+|+. +..++.++.|||||
T Consensus 87 ~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~ 166 (331)
T PRK15079 87 GMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQ 166 (331)
T ss_pred cCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHH
Confidence 0112346777641 1222222 235556663 45789999999999
Q ss_pred H-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEecChhhh-hhcccccceecceEEEe
Q 004609 420 S-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYADLS-CLKDKDTRFENAATEFS 494 (742)
Q Consensus 420 k-rl~~~~~l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~-~~~~vlitTH~~~l~-~~a~~~~~i~~g~~~~~ 494 (742)
+ |+.++++++.+|+|||+||||+|||+.....+.. ++..+.+ .+.++|++|||+++. .+|+++..+.+|.+...
T Consensus 167 ~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~-lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~ive~ 243 (331)
T PRK15079 167 CQRIGIARALILEPKLIICDEPVSALDVSIQAQVVN-LLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVEL 243 (331)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH-HHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 9 8999999999999999999999999999999998 4555554 488999999998855 68999999999988654
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.2e-24 Score=231.95 Aligned_cols=159 Identities=16% Similarity=0.129 Sum_probs=127.6
Q ss_pred ecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhh-------------------h----hhhceeecCCC
Q 004609 335 GISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------M----SKAGLYLPAKN 388 (742)
Q Consensus 335 ~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~-------------------m----aq~G~~vPa~~ 388 (742)
.|+++.+ ++||++.+| ++++|+||||||||||||+| |++.+ + .+...|+|+..
T Consensus 2 ~~~~~~~l~~vs~~i~~G-ei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~ 80 (363)
T TIGR01186 2 KTGGKKGVNDADLAIAKG-EIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQF 80 (363)
T ss_pred ccCCceeEEeeEEEEcCC-CEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCC
Confidence 3444444 999999999 99999999999999999999 66632 1 22345777654
Q ss_pred CC--CchHH---------------------HHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCC
Q 004609 389 HP--RLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGT 444 (742)
Q Consensus 389 ~~--~i~~~---------------------d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLDEp~~gl 444 (742)
.. .+++. ..++..+|+...+++.+++|||||+ |+.++++++.+|+++||||||++|
T Consensus 81 ~l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saL 160 (363)
T TIGR01186 81 ALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSAL 160 (363)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 21 12222 2346677888889999999999999 999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 445 DPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 445 Dp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
||..+..+...+.+...+.+.|+|++|||.+ ...+|+++..+.+|.+...
T Consensus 161 D~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~ 211 (363)
T TIGR01186 161 DPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQV 211 (363)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEee
Confidence 9999999999666543455889999999987 5688999999999988643
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.4e-23 Score=226.84 Aligned_cols=167 Identities=11% Similarity=0.131 Sum_probs=131.2
Q ss_pred cEEEeeeeeecC----Ccee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhh---------------h------
Q 004609 326 EMTVGSLSKGIS----DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL---------------M------ 377 (742)
Q Consensus 326 ~l~~~nl~~~y~----~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~---------------m------ 377 (742)
.++++||++.|+ ...+ ++||+|.+| ++++|+||||||||||+|+| |+... +
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~G-e~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~ 81 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEG-EIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPR 81 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCC-CEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHH
Confidence 367899999993 3333 999999999 99999999999999999999 77531 0
Q ss_pred ------hhhceeecCCCCCC----chH---------------------------HHHHHHHcCCcc---ccccccccchH
Q 004609 378 ------SKAGLYLPAKNHPR----LPW---------------------------FDLILADIGDHQ---SLEQNLSTFSG 417 (742)
Q Consensus 378 ------aq~G~~vPa~~~~~----i~~---------------------------~d~il~~ig~~~---~~~~~lstfSg 417 (742)
.+...++|++.... +.+ +..++..+|+.+ .+++.++.|||
T Consensus 82 ~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSg 161 (330)
T PRK15093 82 ERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTE 161 (330)
T ss_pred HHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCH
Confidence 01234777764211 111 123455667653 35788999999
Q ss_pred HHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEecChhhh-hhcccccceecceEEEe
Q 004609 418 HIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYADLS-CLKDKDTRFENAATEFS 494 (742)
Q Consensus 418 g~k-rl~~~~~l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~-~~~~vlitTH~~~l~-~~a~~~~~i~~g~~~~~ 494 (742)
||+ |+.++++++.+|++||+||||+|||+..+..+.. ++..+.+ .|.|+|++|||+++. .+|+++..+.+|.+...
T Consensus 162 G~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~-lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G~ive~ 240 (330)
T PRK15093 162 GECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFR-LLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVET 240 (330)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHH-HHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence 999 8999999999999999999999999999999999 4445655 588999999998854 78999999999988654
|
|
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.8e-23 Score=218.87 Aligned_cols=167 Identities=20% Similarity=0.273 Sum_probs=127.5
Q ss_pred cEEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhh--hhh-------------------hhhc
Q 004609 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLA--SLM-------------------SKAG 381 (742)
Q Consensus 326 ~l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli--~~m-------------------aq~G 381 (742)
.+.++|+++.|++..+ ++||++.+| ++++|+|||||||||||++| |+. .+- .+.|
T Consensus 7 ~l~~~~l~~~~~~~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 85 (252)
T CHL00131 7 ILEIKNLHASVNENEILKGLNLSINKG-EIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLG 85 (252)
T ss_pred eEEEEeEEEEeCCEEeeecceeEEcCC-cEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheee
Confidence 4789999999987555 999999999 99999999999999999999 652 110 1111
Q ss_pred -eeecCCCC--CCchH----------------------------HHHHHHHcCCc-cccccccc-cchHHHH-HHHHHHH
Q 004609 382 -LYLPAKNH--PRLPW----------------------------FDLILADIGDH-QSLEQNLS-TFSGHIS-RIVDILE 427 (742)
Q Consensus 382 -~~vPa~~~--~~i~~----------------------------~d~il~~ig~~-~~~~~~ls-tfSgg~k-rl~~~~~ 427 (742)
.++|+... ..++. +..++..+|+. ..+++.+. .|||||+ |+.++++
T Consensus 86 ~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~a 165 (252)
T CHL00131 86 IFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQM 165 (252)
T ss_pred EEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHHHH
Confidence 23444321 00000 12345556665 34667776 5999999 8999999
Q ss_pred hcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChhhhh-h-cccccceecceEEEe
Q 004609 428 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSC-L-KDKDTRFENAATEFS 494 (742)
Q Consensus 428 l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~l~~-~-a~~~~~i~~g~~~~~ 494 (742)
++.+|+++||||||+|||+.....+... +..+.+.|.|+|++||+.++.. + +++.+.+.+|.+..+
T Consensus 166 l~~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~ 233 (252)
T CHL00131 166 ALLDSELAILDETDSGLDIDALKIIAEG-INKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKT 233 (252)
T ss_pred HHcCCCEEEEcCCcccCCHHHHHHHHHH-HHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEe
Confidence 9999999999999999999999999984 4455566889999999988554 5 799999999988755
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.2e-23 Score=219.26 Aligned_cols=166 Identities=19% Similarity=0.255 Sum_probs=127.1
Q ss_pred cEEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhh----------------h---------
Q 004609 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL----------------M--------- 377 (742)
Q Consensus 326 ~l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~----------------m--------- 377 (742)
.+.++|+++.|++..+ ++||++.+| ++++|+||||||||||||+| |+..+ +
T Consensus 4 ~l~i~~v~~~~~~~~~l~~isl~i~~G-e~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~ 82 (258)
T PRK14241 4 RIDVKDLNIYYGSFHAVEDVNLNIEPR-SVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVA 82 (258)
T ss_pred cEEEeeEEEEECCEeeeeeeeEEEcCC-cEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHH
Confidence 4688999999987555 999999999 99999999999999999999 66531 0
Q ss_pred -hhhceeecCCCC--CCchHHHH----------------------HHHHcCC----ccccccccccchHHHH-HHHHHHH
Q 004609 378 -SKAGLYLPAKNH--PRLPWFDL----------------------ILADIGD----HQSLEQNLSTFSGHIS-RIVDILE 427 (742)
Q Consensus 378 -aq~G~~vPa~~~--~~i~~~d~----------------------il~~ig~----~~~~~~~lstfSgg~k-rl~~~~~ 427 (742)
.+...|+|+... ..++++++ ++..+|+ .+..++.+.+|||||+ |++++++
T Consensus 83 ~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lara 162 (258)
T PRK14241 83 VRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARA 162 (258)
T ss_pred HhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHH
Confidence 011234555431 11222222 2334454 2456788899999999 8999999
Q ss_pred hcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhccccccee------cceEEEe
Q 004609 428 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFE------NAATEFS 494 (742)
Q Consensus 428 l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~------~g~~~~~ 494 (742)
++.+|+++||||||+|||+.....+...+ ..+.+ +.|+|++||+.+ +..+|+++..+. +|.+...
T Consensus 163 l~~~p~llllDEPt~~LD~~~~~~l~~~l-~~~~~-~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~~ 234 (258)
T PRK14241 163 IAVEPDVLLMDEPCSALDPISTLAIEDLI-NELKQ-DYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEI 234 (258)
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHH-HHHhc-CCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEec
Confidence 99999999999999999999999998844 44554 589999999987 567999998886 6777544
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.1e-24 Score=218.64 Aligned_cols=152 Identities=18% Similarity=0.236 Sum_probs=119.3
Q ss_pred cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhhh--------------hhceeecCCCC--CCchHH---------
Q 004609 342 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS--------------KAGLYLPAKNH--PRLPWF--------- 395 (742)
Q Consensus 342 ~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~ma--------------q~G~~vPa~~~--~~i~~~--------- 395 (742)
++||++.+| ++++|+||||||||||||+| |++.+-. ....++|+... ..+++.
T Consensus 3 ~is~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~~ 81 (230)
T TIGR01184 3 GVNLTIQQG-EFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAVDR 81 (230)
T ss_pred ceeEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHHHh
Confidence 578999999 99999999999999999999 6653210 00135555431 111222
Q ss_pred --------------HHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHH
Q 004609 396 --------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYL 460 (742)
Q Consensus 396 --------------d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l 460 (742)
..++..+|+.+..++.+++|||||+ |+.++++++.+|+++||||||+|||+.....+...+.+..
T Consensus 82 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~ 161 (230)
T TIGR01184 82 VLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIW 161 (230)
T ss_pred cccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHH
Confidence 2335556777778899999999999 8999999999999999999999999999999999555544
Q ss_pred hcCCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 461 RDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 461 ~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
.+.+.|+|++||+.+ +..+|+++..+.+|.+...
T Consensus 162 ~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~ 196 (230)
T TIGR01184 162 EEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANI 196 (230)
T ss_pred HhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecc
Confidence 445889999999987 5679999999999988644
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.8e-23 Score=239.99 Aligned_cols=166 Identities=17% Similarity=0.210 Sum_probs=131.6
Q ss_pred EEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhh--h--------------------hhhc
Q 004609 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL--M--------------------SKAG 381 (742)
Q Consensus 327 l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~--m--------------------aq~G 381 (742)
++++|+++.|++..+ ++||++.+| ++++|+||||||||||||+| |++.+ - .+..
T Consensus 2 l~i~~l~~~~~~~~il~~isl~i~~G-e~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (500)
T TIGR02633 2 LEMKGIVKTFGGVKALDGIDLEVRPG-ECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGI 80 (500)
T ss_pred EEEEeEEEEeCCeEeecceEEEEeCC-cEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCE
Confidence 578999999987665 999999999 99999999999999999999 66542 0 0112
Q ss_pred eeecCCCC--CCchH-------------------------HHHHHHHcCCcccc-ccccccchHHHH-HHHHHHHhcCCC
Q 004609 382 LYLPAKNH--PRLPW-------------------------FDLILADIGDHQSL-EQNLSTFSGHIS-RIVDILELVSRE 432 (742)
Q Consensus 382 ~~vPa~~~--~~i~~-------------------------~d~il~~ig~~~~~-~~~lstfSgg~k-rl~~~~~l~~~~ 432 (742)
.|+|+... ..+++ ++.++..+|+.... ++.+++|||||+ |+.++++++.+|
T Consensus 81 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p 160 (500)
T TIGR02633 81 VIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQA 160 (500)
T ss_pred EEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCC
Confidence 46666531 11111 12345556665543 567999999999 999999999999
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 433 SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 433 ~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
+++||||||+|||+.....+.. ++..+.+.|.++|++||+.+ +..+|++++.+.+|.+...
T Consensus 161 ~lllLDEPt~~LD~~~~~~l~~-~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~ 222 (500)
T TIGR02633 161 RLLILDEPSSSLTEKETEILLD-IIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVAT 222 (500)
T ss_pred CEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeee
Confidence 9999999999999999999999 55556677889999999987 5678999999999987543
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.6e-24 Score=204.29 Aligned_cols=138 Identities=20% Similarity=0.203 Sum_probs=111.9
Q ss_pred EEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhHHhhhhhhhhceeecCCCCCCchHHHHHHHHcCCc
Q 004609 328 TVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDH 405 (742)
Q Consensus 328 ~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~lGli~~maq~G~~vPa~~~~~i~~~d~il~~ig~~ 405 (742)
+++|+++.|++..+ ++||++.+| ++++|+||||+|||||++++ +|...|..|...+...
T Consensus 2 ~~~~l~~~~~~~~~l~~~~~~~~~G-e~~~i~G~nGsGKStLl~~l--------~G~~~~~~G~i~~~~~---------- 62 (144)
T cd03221 2 ELENLSKTYGGKLLLKDISLTINPG-DRIGLVGRNGAGKSTLLKLI--------AGELEPDEGIVTWGST---------- 62 (144)
T ss_pred EEEEEEEEECCceEEEeeEEEECCC-CEEEEECCCCCCHHHHHHHH--------cCCCCCCceEEEECCe----------
Confidence 57899999977555 999999999 99999999999999999999 8888787774322210
Q ss_pred cccccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccc
Q 004609 406 QSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKD 483 (742)
Q Consensus 406 ~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~ 483 (742)
..-..+..||+||+ |++++++++.+|+++|||||++|+|+.....+...+. .+ +.++|++||+.+ +..++++.
T Consensus 63 -~~i~~~~~lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~-~~---~~til~~th~~~~~~~~~d~v 137 (144)
T cd03221 63 -VKIGYFEQLSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALK-EY---PGTVILVSHDRYFLDQVATKI 137 (144)
T ss_pred -EEEEEEccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHH-Hc---CCEEEEEECCHHHHHHhCCEE
Confidence 00111223999999 8999999999999999999999999999999888443 33 479999999987 55788988
Q ss_pred cceecc
Q 004609 484 TRFENA 489 (742)
Q Consensus 484 ~~i~~g 489 (742)
..+.+|
T Consensus 138 ~~l~~g 143 (144)
T cd03221 138 IELEDG 143 (144)
T ss_pred EEEeCC
Confidence 887765
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.7e-23 Score=218.69 Aligned_cols=177 Identities=15% Similarity=0.065 Sum_probs=130.2
Q ss_pred cCCCCCCCCCCCCCcEEEeeeeeecCC--cee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh---------
Q 004609 312 SSNSNPLKSDVENSEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------- 377 (742)
Q Consensus 312 ~~~~~~~~~~~~~~~l~~~nl~~~y~~--~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m--------- 377 (742)
|||++-++. .+.+.++|+++.|++ ..+ ++||++.+| ++++|+||||+|||||||+| |++.+.
T Consensus 8 ~~~~~~~~~---~~~i~~~~l~~~~~~~~~~il~~isl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~ 83 (257)
T cd03288 8 SSNSGLVGL---GGEIKIHDLCVRYENNLKPVLKHVKAYIKPG-QKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGI 83 (257)
T ss_pred CCCcccccC---CceEEEEEEEEEeCCCCCcceeEEEEEEcCC-CEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCE
Confidence 344444443 368999999999975 334 999999999 99999999999999999999 654321
Q ss_pred ----------hhhceeecCCCCC-CchH--------------HHHHHHHc-----------CCccccccccccchHHHH-
Q 004609 378 ----------SKAGLYLPAKNHP-RLPW--------------FDLILADI-----------GDHQSLEQNLSTFSGHIS- 420 (742)
Q Consensus 378 ----------aq~G~~vPa~~~~-~i~~--------------~d~il~~i-----------g~~~~~~~~lstfSgg~k- 420 (742)
.+...|+|+.... ..++ +..++... |+...+.....+||+||+
T Consensus 84 ~i~~~~~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~q 163 (257)
T cd03288 84 DISKLPLHTLRSRLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQ 163 (257)
T ss_pred EhhhCCHHHHhhhEEEECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHH
Confidence 1122455654311 0011 11112222 233334455679999999
Q ss_pred HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcccccceecceEEEe
Q 004609 421 RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 421 rl~~~~~l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~l~~~a~~~~~i~~g~~~~~ 494 (742)
|++++++++.+|+++||||||+|+|+.....+...+ ..+.+ +.|+|++||+.+....|+++..+.+|.+..+
T Consensus 164 rl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l-~~~~~-~~tiii~sh~~~~~~~~dri~~l~~G~i~~~ 235 (257)
T cd03288 164 LFCLARAFVRKSSILIMDEATASIDMATENILQKVV-MTAFA-DRTVVTIAHRVSTILDADLVLVLSRGILVEC 235 (257)
T ss_pred HHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHH-HHhcC-CCEEEEEecChHHHHhCCEEEEEECCEEEEe
Confidence 899999999999999999999999999998888844 44544 7899999999986666999999999988654
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.3e-23 Score=214.36 Aligned_cols=158 Identities=20% Similarity=0.240 Sum_probs=120.9
Q ss_pred EEEeeeeeecCC-------cee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh-------------------
Q 004609 327 MTVGSLSKGISD-------FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------- 377 (742)
Q Consensus 327 l~~~nl~~~y~~-------~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m------------------- 377 (742)
+.++|+++.|++ ..+ ++||++.+| ++++|+||||+||||||++| |++.+-
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~G-e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~ 80 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAG-ECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQAS 80 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcC
Confidence 568899999962 234 999999999 99999999999999999999 554220
Q ss_pred --------hhhceeecCCCCC--CchH---------------------HHHHHHHcCCccc-cccccccchHHHH-HHHH
Q 004609 378 --------SKAGLYLPAKNHP--RLPW---------------------FDLILADIGDHQS-LEQNLSTFSGHIS-RIVD 424 (742)
Q Consensus 378 --------aq~G~~vPa~~~~--~i~~---------------------~d~il~~ig~~~~-~~~~lstfSgg~k-rl~~ 424 (742)
.+...|+|+.... .++. +..++..+|+.+. .++.+.+||+||+ |+.+
T Consensus 81 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~l 160 (224)
T TIGR02324 81 PREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNI 160 (224)
T ss_pred HHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHH
Confidence 0112366665321 0111 1223556676654 4678999999999 8999
Q ss_pred HHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChhhh-hhcccccce
Q 004609 425 ILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLS-CLKDKDTRF 486 (742)
Q Consensus 425 ~~~l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~l~-~~a~~~~~i 486 (742)
+++++.+|+++||||||+|+|+.....+...+ ..+++.|.|+|++||+.++. .+|++++.+
T Consensus 161 aral~~~p~llllDEPt~~LD~~~~~~l~~~l-~~~~~~g~tii~vsH~~~~~~~~~d~i~~~ 222 (224)
T TIGR02324 161 ARGFIADYPILLLDEPTASLDAANRQVVVELI-AEAKARGAALIGIFHDEEVRELVADRVMDV 222 (224)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH-HHHHhcCCEEEEEeCCHHHHHHhcceeEec
Confidence 99999999999999999999999999999844 45566688999999998854 588876554
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.7e-23 Score=241.90 Aligned_cols=161 Identities=16% Similarity=0.162 Sum_probs=125.9
Q ss_pred EEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh-------h-hhceeecCCCCC--Cch
Q 004609 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------S-KAGLYLPAKNHP--RLP 393 (742)
Q Consensus 327 l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m-------a-q~G~~vPa~~~~--~i~ 393 (742)
++++|+++.|+++++ ++||++.+| ++++|+||||||||||||+| |++.+- . ....|+|+.... .++
T Consensus 2 l~i~~ls~~~~~~~il~~vsl~i~~G-e~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~t 80 (530)
T PRK15064 2 LSTANITMQFGAKPLFENISVKFGGG-NRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGKLRQDQFAFEEFT 80 (530)
T ss_pred EEEEEEEEEeCCcEeEeCCEEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCcCCCCc
Confidence 578999999987666 999999999 99999999999999999999 665331 0 011245554211 011
Q ss_pred H-----------------------------------------------------HHHHHHHcCCcccc-ccccccchHHH
Q 004609 394 W-----------------------------------------------------FDLILADIGDHQSL-EQNLSTFSGHI 419 (742)
Q Consensus 394 ~-----------------------------------------------------~d~il~~ig~~~~~-~~~lstfSgg~ 419 (742)
+ +..++..+|+.+.. ++.+++|||||
T Consensus 81 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGq 160 (530)
T PRK15064 81 VLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAPGW 160 (530)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcCHHH
Confidence 1 12345556665433 46789999999
Q ss_pred H-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEE
Q 004609 420 S-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATE 492 (742)
Q Consensus 420 k-rl~~~~~l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~ 492 (742)
+ |++++++++.+|++|||||||+|||+.....+...+. +.+.|||++|||.+ +..+|++++.+.+|.+.
T Consensus 161 ~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~----~~~~tiiivsHd~~~~~~~~d~i~~l~~g~i~ 231 (530)
T PRK15064 161 KLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLN----ERNSTMIIISHDRHFLNSVCTHMADLDYGELR 231 (530)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHH----hCCCeEEEEeCCHHHHHhhcceEEEEeCCEEE
Confidence 9 9999999999999999999999999999998887443 34789999999987 66799999999999874
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-23 Score=240.67 Aligned_cols=163 Identities=18% Similarity=0.167 Sum_probs=131.4
Q ss_pred eeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh--------------------hhhceeecC
Q 004609 330 GSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------SKAGLYLPA 386 (742)
Q Consensus 330 ~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m--------------------aq~G~~vPa 386 (742)
+|+++.|+++.+ ++||++.+| ++++|+||||||||||||+| |++.+- .+.-.|+|+
T Consensus 2 ~nl~~~~~~~~il~~vs~~i~~G-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q 80 (491)
T PRK10982 2 SNISKSFPGVKALDNVNLKVRPH-SIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQ 80 (491)
T ss_pred CceEEEeCCEEeeeeeeEEEcCC-cEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEec
Confidence 689999987655 999999999 99999999999999999999 665320 111236666
Q ss_pred CCCC--CchH------------------------HHHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEEEEcC
Q 004609 387 KNHP--RLPW------------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDE 439 (742)
Q Consensus 387 ~~~~--~i~~------------------------~d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLDE 439 (742)
.... .+++ ++.++..+|+....++.+++|||||+ |+.++++++.+|+++||||
T Consensus 81 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDE 160 (491)
T PRK10982 81 ELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDE 160 (491)
T ss_pred ccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeC
Confidence 5310 1111 22345666777777899999999999 8999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 440 IGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 440 p~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
||+|||+.....+.. ++..+.+.|.++|++||+.+ +..+|++++.+.+|.+...
T Consensus 161 Pt~~LD~~~~~~l~~-~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~ 215 (491)
T PRK10982 161 PTSSLTEKEVNHLFT-IIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIAT 215 (491)
T ss_pred CCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEee
Confidence 999999999999998 55556667889999999987 5678999999999988654
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.3e-23 Score=220.30 Aligned_cols=168 Identities=20% Similarity=0.270 Sum_probs=130.9
Q ss_pred CCcEEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh-----------------------
Q 004609 324 NSEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM----------------------- 377 (742)
Q Consensus 324 ~~~l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m----------------------- 377 (742)
.-.+.++||++.|+++.+ ++||+|.+| ++++|+||||+|||||||+| |++.+.
T Consensus 19 ~~~l~i~nl~~~~~~~~il~~vs~~i~~G-e~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 97 (276)
T PRK14271 19 APAMAAVNLTLGFAGKTVLDQVSMGFPAR-AVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVL 97 (276)
T ss_pred CcEEEEeeEEEEECCEEEeeeeEEEEcCC-cEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhH
Confidence 346789999999987666 999999999 99999999999999999999 665420
Q ss_pred --hhhceeecCCCCC-CchHHHH----------------------HHHHcCCcc----ccccccccchHHHH-HHHHHHH
Q 004609 378 --SKAGLYLPAKNHP-RLPWFDL----------------------ILADIGDHQ----SLEQNLSTFSGHIS-RIVDILE 427 (742)
Q Consensus 378 --aq~G~~vPa~~~~-~i~~~d~----------------------il~~ig~~~----~~~~~lstfSgg~k-rl~~~~~ 427 (742)
.....|+|+.... ..+++++ ++..+++.. .+++.+.+|||||+ |++++++
T Consensus 98 ~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAra 177 (276)
T PRK14271 98 EFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLART 177 (276)
T ss_pred HHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHH
Confidence 1112366665311 1122222 234444432 35677899999999 8999999
Q ss_pred hcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 428 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 428 l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
++.+|.++||||||+|+|+.....+.. ++..+.+ +.|+|++||+.+ +..+++++..+.+|++...
T Consensus 178 l~~~p~lllLDEPt~~LD~~~~~~l~~-~L~~~~~-~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~ 243 (276)
T PRK14271 178 LAVNPEVLLLDEPTSALDPTTTEKIEE-FIRSLAD-RLTVIIVTHNLAQAARISDRAALFFDGRLVEE 243 (276)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999998 4555555 489999999987 5679999999999988654
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.6e-23 Score=246.71 Aligned_cols=162 Identities=20% Similarity=0.208 Sum_probs=121.9
Q ss_pred cEEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhhhh----hc----eeecCCCCC-C-c
Q 004609 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMSK----AG----LYLPAKNHP-R-L 392 (742)
Q Consensus 326 ~l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~maq----~G----~~vPa~~~~-~-i 392 (742)
.++++||+++|++..+ ++||++.+| ++++|+||||||||||||+| |++.+-.. .| .++|+.... . .
T Consensus 3 ~l~i~~ls~~~~~~~il~~is~~i~~G-e~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~~~~~l~q~~~~~~~~ 81 (635)
T PRK11147 3 LISIHGAWLSFSDAPLLDNAELHIEDN-ERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPRNVEG 81 (635)
T ss_pred EEEEeeEEEEeCCceeEeCcEEEECCC-CEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCCEEEEeccCCCCCCCC
Confidence 3678999999988766 999999999 99999999999999999999 55432100 00 122221100 0 0
Q ss_pred hHH-------------------------------------------------------HHHHHHcCCccccccccccchH
Q 004609 393 PWF-------------------------------------------------------DLILADIGDHQSLEQNLSTFSG 417 (742)
Q Consensus 393 ~~~-------------------------------------------------------d~il~~ig~~~~~~~~lstfSg 417 (742)
.++ ..++..+|+. .++.+++|||
T Consensus 82 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~--~~~~~~~LSg 159 (635)
T PRK11147 82 TVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLD--PDAALSSLSG 159 (635)
T ss_pred CHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCC--CCCchhhcCH
Confidence 001 1123333443 3678999999
Q ss_pred HHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 418 HIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 418 g~k-rl~~~~~l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
||+ |++++++++.+|+||||||||+|||+.....|...+.++ +++||+||||.+ +..+|++++.+.+|.+..+
T Consensus 160 GekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~----~~tvlivsHd~~~l~~~~d~i~~L~~G~i~~~ 234 (635)
T PRK11147 160 GWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF----QGSIIFISHDRSFIRNMATRIVDLDRGKLVSY 234 (635)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC----CCEEEEEeCCHHHHHHhcCeEEEEECCEEEEe
Confidence 999 999999999999999999999999999999888744333 469999999987 5678999999999987644
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.8e-23 Score=209.94 Aligned_cols=165 Identities=17% Similarity=0.169 Sum_probs=121.6
Q ss_pred cEEEeeeeeecC----Ccee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhh---hh------------------
Q 004609 326 EMTVGSLSKGIS----DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLAS---LM------------------ 377 (742)
Q Consensus 326 ~l~~~nl~~~y~----~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~---~m------------------ 377 (742)
.+.++||+|.|+ +..+ ++||++.+| ++++|+|||||||||||++| |+.. +-
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~ 81 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPG-EMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKY 81 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCC-cEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhh
Confidence 467899999995 3344 999999999 99999999999999999999 6554 10
Q ss_pred hhhceeecCCCC--CCchHHHHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHH
Q 004609 378 SKAGLYLPAKNH--PRLPWFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALAT 454 (742)
Q Consensus 378 aq~G~~vPa~~~--~~i~~~d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLDEp~~glDp~~~~aL~~ 454 (742)
.+.-.|+|+... ..+++.+++...... ..++.+..||+||+ |+.++++++.+|+++||||||+|+|+.....+..
T Consensus 82 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~--~~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~ 159 (202)
T cd03233 82 PGEIIYVSEEDVHFPTLTVRETLDFALRC--KGNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILK 159 (202)
T ss_pred cceEEEEecccccCCCCcHHHHHhhhhhh--ccccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHH
Confidence 001124444321 123445544321111 16778899999999 8999999999999999999999999999999999
Q ss_pred HHHHHHhcCCcEEEEE-ecCh-hhhhhcccccceecceEEE
Q 004609 455 SILQYLRDRVGLAVVT-THYA-DLSCLKDKDTRFENAATEF 493 (742)
Q Consensus 455 all~~l~~~~~~vlit-TH~~-~l~~~a~~~~~i~~g~~~~ 493 (742)
.+.+...+.+.++|++ ||+. ++..+|++...+.+|.+..
T Consensus 160 ~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~ 200 (202)
T cd03233 160 CIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIY 200 (202)
T ss_pred HHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEe
Confidence 5554333335665555 5554 4778999999999998754
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.1e-23 Score=215.23 Aligned_cols=166 Identities=17% Similarity=0.247 Sum_probs=128.2
Q ss_pred cEEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh-------------------------
Q 004609 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------------- 377 (742)
Q Consensus 326 ~l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m------------------------- 377 (742)
.+.++|+++.|+++.+ ++||++.+| ++++|+||||+|||||||+| |+..+-
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~ 81 (249)
T PRK14253 3 KFNIENLDLFYGENQALKSINLPIPAR-QVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADL 81 (249)
T ss_pred eEEEeccEEEECCeeeeecceEEecCC-CEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHH
Confidence 3678999999987665 999999999 99999999999999999999 665420
Q ss_pred hhhceeecCCCCC-CchHHHHH----------------------HHHcCCc----cccccccccchHHHH-HHHHHHHhc
Q 004609 378 SKAGLYLPAKNHP-RLPWFDLI----------------------LADIGDH----QSLEQNLSTFSGHIS-RIVDILELV 429 (742)
Q Consensus 378 aq~G~~vPa~~~~-~i~~~d~i----------------------l~~ig~~----~~~~~~lstfSgg~k-rl~~~~~l~ 429 (742)
.+...|+|+.... ..++.+++ +..++.. +.++..+.+||+||+ |+.++++++
T Consensus 82 ~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~ 161 (249)
T PRK14253 82 RIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIA 161 (249)
T ss_pred HhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHH
Confidence 1112356655311 11222222 2223332 345678899999999 899999999
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 430 SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 430 ~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
.+|+++||||||+|||+.....+.. ++..+.+ +.|+|++||+.+ +..+|++++.+.+|.+...
T Consensus 162 ~~p~llllDEP~~~LD~~~~~~l~~-~l~~~~~-~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~ 225 (249)
T PRK14253 162 MEPDVILMDEPTSALDPIATHKIEE-LMEELKK-NYTIVIVTHSMQQARRISDRTAFFLMGELVEH 225 (249)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHH-HHHHHhc-CCeEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999998 5555665 589999999987 5778999999999988754
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.3e-23 Score=216.14 Aligned_cols=164 Identities=18% Similarity=0.247 Sum_probs=127.7
Q ss_pred EEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhh----------------h----------h
Q 004609 328 TVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL----------------M----------S 378 (742)
Q Consensus 328 ~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~----------------m----------a 378 (742)
+++|+++.|+++.+ ++||++.+| ++++|+||||||||||+|+| |+..+ + .
T Consensus 7 ~~~~l~~~~~~~~~l~~is~~i~~G-e~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 85 (251)
T PRK14244 7 SVKNLNLWYGSKQILFDINLDIYKR-EVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLR 85 (251)
T ss_pred EeeeEEEEECCeeeeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHh
Confidence 57899999987655 999999999 99999999999999999999 66431 0 1
Q ss_pred hhceeecCCCCCC-chHHH-----------------------HHHHHcCCcc----ccccccccchHHHH-HHHHHHHhc
Q 004609 379 KAGLYLPAKNHPR-LPWFD-----------------------LILADIGDHQ----SLEQNLSTFSGHIS-RIVDILELV 429 (742)
Q Consensus 379 q~G~~vPa~~~~~-i~~~d-----------------------~il~~ig~~~----~~~~~lstfSgg~k-rl~~~~~l~ 429 (742)
+...|+|+..... .++++ .++..+|+.. .+++.+..||+||+ |++++++++
T Consensus 86 ~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~ 165 (251)
T PRK14244 86 AKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIA 165 (251)
T ss_pred hhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHh
Confidence 1124666654210 01112 2344555543 35677899999999 899999999
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 430 SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 430 ~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
.+|+++||||||+|||+.....+.. ++..+.+ +.|+|++||+.+ +..+|++++.+.+|.+...
T Consensus 166 ~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~-~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~ 229 (251)
T PRK14244 166 VKPTMLLMDEPCSALDPVATNVIEN-LIQELKK-NFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEY 229 (251)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHH-HHHHHhc-CCeEEEEeCCHHHHHhhcCEEEEEECCEEEEe
Confidence 9999999999999999999999988 4445554 789999999987 5678999999999988654
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.2e-23 Score=216.25 Aligned_cols=166 Identities=20% Similarity=0.277 Sum_probs=127.7
Q ss_pred cEEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhh--h--------------h---------
Q 004609 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLAS--L--------------M--------- 377 (742)
Q Consensus 326 ~l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~--~--------------m--------- 377 (742)
.+.++|+++.|+++.+ ++||++.+| ++++|+||||+||||||++| |+.. + .
T Consensus 5 ~l~~~~l~~~~~~~~~l~~vs~~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 83 (252)
T PRK14255 5 IITSSDVHLFYGKFEALKGIDLDFNQN-EITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQ 83 (252)
T ss_pred eEEEEeEEEEECCeeEEecceEEEcCC-CEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHH
Confidence 5788999999987655 999999999 99999999999999999999 6532 1 0
Q ss_pred -hhhceeecCCCCC-CchHHHHH----------------------HHHcCC----ccccccccccchHHHH-HHHHHHHh
Q 004609 378 -SKAGLYLPAKNHP-RLPWFDLI----------------------LADIGD----HQSLEQNLSTFSGHIS-RIVDILEL 428 (742)
Q Consensus 378 -aq~G~~vPa~~~~-~i~~~d~i----------------------l~~ig~----~~~~~~~lstfSgg~k-rl~~~~~l 428 (742)
.+...|+|+.... ..++.+++ +..++. .+..++.+.+||+||+ |+++++++
T Consensus 84 ~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral 163 (252)
T PRK14255 84 LRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVL 163 (252)
T ss_pred hcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHH
Confidence 0112356655311 11222222 122222 2345678899999999 89999999
Q ss_pred cCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 429 VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 429 ~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
+.+|+++||||||+|||+.....+...+. .+.+ +.|+|++||+.+ +..+|++++.+.+|.+..+
T Consensus 164 ~~~p~llllDEPt~~LD~~~~~~l~~~l~-~~~~-~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~ 228 (252)
T PRK14255 164 AVKPDVILLDEPTSALDPISSTQIENMLL-ELRD-QYTIILVTHSMHQASRISDKTAFFLTGNLIEF 228 (252)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHH-HHHh-CCEEEEEECCHHHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999998444 4555 479999999988 4578999999999998754
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.9e-23 Score=215.38 Aligned_cols=165 Identities=19% Similarity=0.266 Sum_probs=128.4
Q ss_pred EEEeeeeeecCC----cee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhh---hh----------------hhh
Q 004609 327 MTVGSLSKGISD----FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLAS---LM----------------SKA 380 (742)
Q Consensus 327 l~~~nl~~~y~~----~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~---~m----------------aq~ 380 (742)
+.++|+++.|.+ +.+ ++||++.+| ++++|+||||||||||||++ |+.. +. .+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~G-e~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~ 82 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESG-QVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKC 82 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCC-eEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhccc
Confidence 457889999954 234 899999999 99999999999999999999 6654 21 111
Q ss_pred ceeecCCCCC--CchHHHH-------------------------HHHHcCCccccccccccchHHHH-HHHHHHHhcCCC
Q 004609 381 GLYLPAKNHP--RLPWFDL-------------------------ILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRE 432 (742)
Q Consensus 381 G~~vPa~~~~--~i~~~d~-------------------------il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~ 432 (742)
..|+|+.... .+++.++ ++..+++.+..++.++.||+||+ |++++++++.+|
T Consensus 83 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p 162 (226)
T cd03234 83 VAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDP 162 (226)
T ss_pred EEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhCC
Confidence 2356655311 1122221 34444555566788999999999 899999999999
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCh--hhhhhcccccceecceEEE
Q 004609 433 SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYA--DLSCLKDKDTRFENAATEF 493 (742)
Q Consensus 433 ~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~--~l~~~a~~~~~i~~g~~~~ 493 (742)
+++||||||+|||+.....+...+ ..+.+.+.|+|++||+. ++..++|++..+.+|.+..
T Consensus 163 ~illlDEP~~gLD~~~~~~~~~~l-~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~ 224 (226)
T cd03234 163 KVLILDEPTSGLDSFTALNLVSTL-SQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVY 224 (226)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHH-HHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEe
Confidence 999999999999999999999844 44555688999999996 5788999999999998754
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.2e-23 Score=217.11 Aligned_cols=166 Identities=19% Similarity=0.242 Sum_probs=128.5
Q ss_pred cEEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhh-----h--------------------
Q 004609 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-----M-------------------- 377 (742)
Q Consensus 326 ~l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~-----m-------------------- 377 (742)
.+.++|+++.|+++.+ ++||++.+| ++++|+||||+|||||||+| |+..+ -
T Consensus 4 ~l~~~~l~~~~~~~~~l~~isl~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 82 (251)
T PRK14270 4 KMESKNLNLWYGEKQALNDINLPIYEN-KITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVE 82 (251)
T ss_pred EEEEEEeEEEECCeeeeeceeEEEcCC-CEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHH
Confidence 3678999999987655 999999999 99999999999999999999 66431 0
Q ss_pred -hhhceeecCCCCC-CchHHHH----------------------HHHHcCC----ccccccccccchHHHH-HHHHHHHh
Q 004609 378 -SKAGLYLPAKNHP-RLPWFDL----------------------ILADIGD----HQSLEQNLSTFSGHIS-RIVDILEL 428 (742)
Q Consensus 378 -aq~G~~vPa~~~~-~i~~~d~----------------------il~~ig~----~~~~~~~lstfSgg~k-rl~~~~~l 428 (742)
.+...|+|+.... ..+.+++ ++..+|+ .+..++++..||+||+ |+++++++
T Consensus 83 ~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral 162 (251)
T PRK14270 83 LRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTI 162 (251)
T ss_pred HHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHH
Confidence 1112455655310 1122222 2333443 2345778999999999 89999999
Q ss_pred cCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 429 VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 429 ~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
+.+|+++||||||+|||+.....+...+. .+.+ +.++|++||+.+ +..+|++++.+.+|.+...
T Consensus 163 ~~~p~llllDEP~~~LD~~~~~~l~~~L~-~~~~-~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~ 227 (251)
T PRK14270 163 AVKPDVILMDEPTSALDPISTLKIEDLMV-ELKK-EYTIVIVTHNMQQASRVSDYTAFFLMGDLIEF 227 (251)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHH-HHHh-CCeEEEEEcCHHHHHHhcCEEEEEECCeEEEe
Confidence 99999999999999999999999988444 4555 589999999987 5678999999999988654
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.5e-23 Score=239.12 Aligned_cols=167 Identities=14% Similarity=0.141 Sum_probs=132.6
Q ss_pred cEEEeeeeeecC---Ccee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhh-h--------------------h
Q 004609 326 EMTVGSLSKGIS---DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-M--------------------S 378 (742)
Q Consensus 326 ~l~~~nl~~~y~---~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~-m--------------------a 378 (742)
.++++|+++.|+ +..+ ++||++.+| ++++|+||||||||||||+| |++.+ - .
T Consensus 259 ~l~~~~l~~~~~~~~~~~vl~~vsl~i~~G-e~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~ 337 (506)
T PRK13549 259 ILEVRNLTAWDPVNPHIKRVDDVSFSLRRG-EILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIA 337 (506)
T ss_pred eEEEecCccccccccccccccceeeEEcCC-cEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHH
Confidence 467889999993 3334 899999999 99999999999999999999 77541 0 0
Q ss_pred hhceeecCCCC-----CCchH--------------------------HHHHHHHcCCc-cccccccccchHHHH-HHHHH
Q 004609 379 KAGLYLPAKNH-----PRLPW--------------------------FDLILADIGDH-QSLEQNLSTFSGHIS-RIVDI 425 (742)
Q Consensus 379 q~G~~vPa~~~-----~~i~~--------------------------~d~il~~ig~~-~~~~~~lstfSgg~k-rl~~~ 425 (742)
+.-.|+|+... ..+++ ++.++..+|+. +..++.+.+|||||+ |+.+|
T Consensus 338 ~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA 417 (506)
T PRK13549 338 QGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLA 417 (506)
T ss_pred CCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHH
Confidence 11246666520 01111 23345667775 467899999999999 89999
Q ss_pred HHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 426 LELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 426 ~~l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
++++.+|+++||||||+|||+.....+.. ++..+.+.|.|||++|||.+ +..+|++.+.+.+|.+.++
T Consensus 418 ~al~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~ 486 (506)
T PRK13549 418 KCLLLNPKILILDEPTRGIDVGAKYEIYK-LINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLKGD 486 (506)
T ss_pred HHHhhCCCEEEEcCCCCCcCHhHHHHHHH-HHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999998 55566667899999999987 6689999999999988654
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.4e-23 Score=216.88 Aligned_cols=166 Identities=18% Similarity=0.260 Sum_probs=127.8
Q ss_pred cEEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh-------------------------
Q 004609 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------------- 377 (742)
Q Consensus 326 ~l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m------------------------- 377 (742)
.+.++|+++.|+++.+ ++||++.+| ++++|+||||+|||||||+| |+..+-
T Consensus 4 ~l~~~~l~~~~~~~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 82 (252)
T PRK14272 4 LLSAQDVNIYYGDKQAVKNVNLDVQRG-TVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVA 82 (252)
T ss_pred EEEEeeeEEEECCEEeeccceEEEcCC-CEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHH
Confidence 3678999999987665 999999999 99999999999999999999 664320
Q ss_pred -hhhceeecCCCC--CCchHHHHHH----------------------HHcCC----ccccccccccchHHHH-HHHHHHH
Q 004609 378 -SKAGLYLPAKNH--PRLPWFDLIL----------------------ADIGD----HQSLEQNLSTFSGHIS-RIVDILE 427 (742)
Q Consensus 378 -aq~G~~vPa~~~--~~i~~~d~il----------------------~~ig~----~~~~~~~lstfSgg~k-rl~~~~~ 427 (742)
.+...|+|+... ..+++.+++. ..++. .+..++.+++|||||+ |++++++
T Consensus 83 ~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lara 162 (252)
T PRK14272 83 MRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARA 162 (252)
T ss_pred hhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHH
Confidence 011235555431 1123333331 11221 1234677899999999 8999999
Q ss_pred hcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 428 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 428 l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
++.+|+++||||||+|+|+.....+.. ++..+.+ +.|+|++||+.+ +..+|++++.+.+|.+..+
T Consensus 163 l~~~p~llllDEP~~~LD~~~~~~l~~-~l~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~ 228 (252)
T PRK14272 163 LAVEPEILLMDEPTSALDPASTARIED-LMTDLKK-VTTIIIVTHNMHQAARVSDTTSFFLVGDLVEH 228 (252)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHH-HHHHHhc-CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999998 4555555 689999999988 5568999999999998754
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3e-23 Score=217.26 Aligned_cols=166 Identities=19% Similarity=0.274 Sum_probs=128.0
Q ss_pred cEEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhh----------------h---------
Q 004609 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL----------------M--------- 377 (742)
Q Consensus 326 ~l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~----------------m--------- 377 (742)
.+.++|+++.|++..+ ++||++.+| ++++|+||||+|||||||+| |+... +
T Consensus 4 ~l~~~~l~~~~~~~~~l~~~sl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~ 82 (251)
T PRK14251 4 IISAKDVHLSYGNYEALHGISLDFEEK-ELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVE 82 (251)
T ss_pred eEEEEeeEEEECCeeeeeeeeEEEcCC-CEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHH
Confidence 4678999999987655 899999999 99999999999999999999 66530 0
Q ss_pred -hhhceeecCCCCC-CchHHHH----------------------HHHHcCCc----cccccccccchHHHH-HHHHHHHh
Q 004609 378 -SKAGLYLPAKNHP-RLPWFDL----------------------ILADIGDH----QSLEQNLSTFSGHIS-RIVDILEL 428 (742)
Q Consensus 378 -aq~G~~vPa~~~~-~i~~~d~----------------------il~~ig~~----~~~~~~lstfSgg~k-rl~~~~~l 428 (742)
.+...|+|+.... ..++.++ ++..+++. ..+++.+.+|||||+ |+++++++
T Consensus 83 ~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral 162 (251)
T PRK14251 83 LRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARAL 162 (251)
T ss_pred hhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHH
Confidence 0112345554311 1122222 23334542 345778899999999 89999999
Q ss_pred cCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 429 VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 429 ~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
+.+|+++||||||+|||+.....+...+. .+.+ +.|+|++||+.+ +..++++++.+.+|.+...
T Consensus 163 ~~~p~llllDEP~~~LD~~~~~~l~~~l~-~~~~-~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~ 227 (251)
T PRK14251 163 AVRPKVVLLDEPTSALDPISSSEIEETLM-ELKH-QYTFIMVTHNLQQAGRISDQTAFLMNGDLIEA 227 (251)
T ss_pred hcCCCEEEecCCCccCCHHHHHHHHHHHH-HHHc-CCeEEEEECCHHHHHhhcCEEEEEECCEEEEe
Confidence 99999999999999999999999988555 4554 689999999987 5678999999999988654
|
|
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3e-23 Score=219.23 Aligned_cols=151 Identities=15% Similarity=0.125 Sum_probs=116.0
Q ss_pred cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhhhh----hc--eeecCCCC--CCchHHH----------------
Q 004609 342 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMSK----AG--LYLPAKNH--PRLPWFD---------------- 396 (742)
Q Consensus 342 ~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~maq----~G--~~vPa~~~--~~i~~~d---------------- 396 (742)
++||++.+| ++++|+|||||||||||++| |++.+-.. .| .++++... ..+++++
T Consensus 42 ~is~~i~~G-e~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~ 120 (264)
T PRK13546 42 DISLKAYEG-DVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEI 120 (264)
T ss_pred eeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHH
Confidence 899999999 99999999999999999999 44432100 00 01111110 1112222
Q ss_pred -----HHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEE
Q 004609 397 -----LILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVT 470 (742)
Q Consensus 397 -----~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlit 470 (742)
.++..+++.+.+++.+.+||+||+ |+.++++++.+|+++||||||+|||+.....+...+. .+.+.+.++|++
T Consensus 121 ~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~-~~~~~g~tiIii 199 (264)
T PRK13546 121 KAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIY-EFKEQNKTIFFV 199 (264)
T ss_pred HHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHH-HHHHCCCEEEEE
Confidence 234445667778889999999999 8999999999999999999999999999999998544 456668899999
Q ss_pred ecChh-hhhhcccccceecceEEEe
Q 004609 471 THYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 471 TH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
||+.+ +..+|++++.+.+|.+...
T Consensus 200 sH~~~~i~~~~d~i~~l~~G~i~~~ 224 (264)
T PRK13546 200 SHNLGQVRQFCTKIAWIEGGKLKDY 224 (264)
T ss_pred cCCHHHHHHHcCEEEEEECCEEEEe
Confidence 99987 5678999999999988643
|
|
| >COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.9e-23 Score=210.82 Aligned_cols=160 Identities=18% Similarity=0.210 Sum_probs=127.4
Q ss_pred CcEEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhHHhhhhhhhhceeecCCCC-------------
Q 004609 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNH------------- 389 (742)
Q Consensus 325 ~~l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~lGli~~maq~G~~vPa~~~------------- 389 (742)
-.+.++|++..|+++.+ |+|.++++| +.++|+|||||||||||+++ +|.+.|.++.
T Consensus 30 ~li~l~~v~v~r~gk~iL~~isW~V~~g-e~W~I~G~NGsGKTTLL~ll--------~~~~~pssg~~~~~G~~~G~~~~ 100 (257)
T COG1119 30 PLIELKNVSVRRNGKKILGDLSWQVNPG-EHWAIVGPNGAGKTTLLSLL--------TGEHPPSSGDVTLLGRRFGKGET 100 (257)
T ss_pred ceEEecceEEEECCEeeccccceeecCC-CcEEEECCCCCCHHHHHHHH--------hcccCCCCCceeeeeeeccCCcc
Confidence 35789999999999888 999999999 99999999999999999999 5544443321
Q ss_pred ----------------------------------CCchH------------HHHHHHHcCCccccccccccchHHHH-HH
Q 004609 390 ----------------------------------PRLPW------------FDLILADIGDHQSLEQNLSTFSGHIS-RI 422 (742)
Q Consensus 390 ----------------------------------~~i~~------------~d~il~~ig~~~~~~~~lstfSgg~k-rl 422 (742)
..+++ ...++..+|.....+++..+||-||+ |+
T Consensus 101 ~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrv 180 (257)
T COG1119 101 IFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRV 180 (257)
T ss_pred hHHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHH
Confidence 00111 22457778888899999999999999 66
Q ss_pred HHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcC--CcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 423 VDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDR--VGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 423 ~~~~~l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~--~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
.++++++.+|.|||||||++|||...+..+.. .+..+... +.++|+|||+.+ +-.-.++...+.+|.+...
T Consensus 181 LiaRALv~~P~LLiLDEP~~GLDl~~re~ll~-~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~~ 254 (257)
T COG1119 181 LIARALVKDPELLILDEPAQGLDLIAREQLLN-RLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQ 254 (257)
T ss_pred HHHHHHhcCCCEEEecCccccCChHHHHHHHH-HHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCceeec
Confidence 67799999999999999999999999999988 44455544 568999999976 4455566667777776543
|
|
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.6e-24 Score=210.62 Aligned_cols=144 Identities=24% Similarity=0.227 Sum_probs=112.1
Q ss_pred eeeeeecCCcee-cccccccCCceEEEEEeCCCCCcchHHhhHHhhhhhhhhceeecCCCCCCchHHHHHHHHcCCcccc
Q 004609 330 GSLSKGISDFPV-PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSL 408 (742)
Q Consensus 330 ~nl~~~y~~~~v-~i~l~l~~g~~~~~ItGpNGsGKSTlLK~lGli~~maq~G~~vPa~~~~~i~~~d~il~~ig~~~~~ 408 (742)
.||++.|++..+ ..++++.+| ++++|+||||+|||||||++ +|+..|.+|...+... .++ ..
T Consensus 4 ~~l~~~~~~~~~l~~~~~i~~G-e~~~l~G~nGsGKSTLl~~l--------~Gl~~p~~G~i~~~g~-----~i~---~~ 66 (177)
T cd03222 4 PDCVKRYGVFFLLVELGVVKEG-EVIGIVGPNGTGKTTAVKIL--------AGQLIPNGDNDEWDGI-----TPV---YK 66 (177)
T ss_pred CCeEEEECCEEEEccCcEECCC-CEEEEECCCCChHHHHHHHH--------HcCCCCCCcEEEECCE-----EEE---EE
Confidence 478999988776 445899999 99999999999999999999 8888887774333210 011 01
Q ss_pred ccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccce
Q 004609 409 EQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRF 486 (742)
Q Consensus 409 ~~~lstfSgg~k-rl~~~~~l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i 486 (742)
.+.. .||+||+ |++++++++.+|+++||||||+|+|+.....+...+.+...+.+.++|++||+.+ +..+|++...+
T Consensus 67 ~q~~-~LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l 145 (177)
T cd03222 67 PQYI-DLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVF 145 (177)
T ss_pred cccC-CCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEE
Confidence 1111 1999999 8999999999999999999999999999999999555543333489999999987 45589988777
Q ss_pred ecceE
Q 004609 487 ENAAT 491 (742)
Q Consensus 487 ~~g~~ 491 (742)
.++..
T Consensus 146 ~~~~~ 150 (177)
T cd03222 146 EGEPG 150 (177)
T ss_pred cCCCc
Confidence 76543
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2e-23 Score=241.33 Aligned_cols=163 Identities=19% Similarity=0.266 Sum_probs=130.6
Q ss_pred CcEEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh-------h-hhceeecCCCC----
Q 004609 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------S-KAGLYLPAKNH---- 389 (742)
Q Consensus 325 ~~l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m-------a-q~G~~vPa~~~---- 389 (742)
..++++|+++.|+++.+ ++||++.+| ++++|+||||||||||||+| |+..+- . ....|+|+...
T Consensus 318 ~~l~~~~l~~~~~~~~~l~~is~~i~~G-e~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~~~q~~~~~~~ 396 (530)
T PRK15064 318 NALEVENLTKGFDNGPLFKNLNLLLEAG-ERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHAYDFE 396 (530)
T ss_pred ceEEEEeeEEeeCCceeecCcEEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEcccccccCC
Confidence 36889999999987655 999999999 99999999999999999999 665331 1 11236666531
Q ss_pred CCchHH----------------HHHHHHcCCc-cccccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHH
Q 004609 390 PRLPWF----------------DLILADIGDH-QSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVA 451 (742)
Q Consensus 390 ~~i~~~----------------d~il~~ig~~-~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLDEp~~glDp~~~~a 451 (742)
..+++. +.++..+|.. +..++++++|||||+ |++++++++.+|+++||||||+|||+.....
T Consensus 397 ~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~ 476 (530)
T PRK15064 397 NDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIES 476 (530)
T ss_pred CCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHH
Confidence 112222 2345667773 567899999999999 9999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEE
Q 004609 452 LATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATE 492 (742)
Q Consensus 452 L~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~ 492 (742)
+...+.++ ++|+|++|||.+ +..+|++++.+.+|.+.
T Consensus 477 l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~ 514 (530)
T PRK15064 477 LNMALEKY----EGTLIFVSHDREFVSSLATRIIEITPDGVV 514 (530)
T ss_pred HHHHHHHC----CCEEEEEeCCHHHHHHhCCEEEEEECCeEE
Confidence 98854443 569999999987 56789999999999876
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.8e-23 Score=217.12 Aligned_cols=161 Identities=16% Similarity=0.245 Sum_probs=124.6
Q ss_pred CcEEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhh----------------h--------
Q 004609 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL----------------M-------- 377 (742)
Q Consensus 325 ~~l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~----------------m-------- 377 (742)
..+.++||++.|++..+ ++||++.+| ++++|+|||||||||||++| |++.+ +
T Consensus 12 ~~l~i~nl~~~~~~~~il~~is~~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~ 90 (269)
T PRK14259 12 IIISLQNVTISYGTFEAVKNVFCDIPRG-KVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPV 90 (269)
T ss_pred ceEEEEeEEEEECCEEEEcceEEEEcCC-CEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHH
Confidence 46889999999987655 999999999 99999999999999999999 66431 0
Q ss_pred --hhhceeecCCCCCC-chHHHH--------------------HHHHcCC----ccccccccccchHHHH-HHHHHHHhc
Q 004609 378 --SKAGLYLPAKNHPR-LPWFDL--------------------ILADIGD----HQSLEQNLSTFSGHIS-RIVDILELV 429 (742)
Q Consensus 378 --aq~G~~vPa~~~~~-i~~~d~--------------------il~~ig~----~~~~~~~lstfSgg~k-rl~~~~~l~ 429 (742)
.+...|+|+..... .++.++ ++..++. .+.+++.+.+||+||+ |++++++++
T Consensus 91 ~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~ 170 (269)
T PRK14259 91 EVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIA 170 (269)
T ss_pred HHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHh
Confidence 01124566653100 122221 2333333 2346778899999999 899999999
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceec
Q 004609 430 SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFEN 488 (742)
Q Consensus 430 ~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~ 488 (742)
.+|+++||||||+|||+.....+...+ ..+.+ +.++|++||+.+ +..+|+++..+.+
T Consensus 171 ~~p~lllLDEPt~gLD~~~~~~l~~~l-~~~~~-~~tiiivtH~~~~~~~~~d~i~~l~~ 228 (269)
T PRK14259 171 IEPEVILMDEPCSALDPISTLKIEETM-HELKK-NFTIVIVTHNMQQAVRVSDMTAFFNA 228 (269)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHH-HHHhc-CCEEEEEeCCHHHHHHhcCEEEEEec
Confidence 999999999999999999999999844 45554 689999999987 6679999988886
|
|
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.7e-23 Score=209.63 Aligned_cols=162 Identities=15% Similarity=0.124 Sum_probs=124.5
Q ss_pred CcEEEeeeeeecCC--cee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhh-------------------hhhh
Q 004609 325 SEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKA 380 (742)
Q Consensus 325 ~~l~~~nl~~~y~~--~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~-------------------maq~ 380 (742)
+.+.++|+++.|++ ..+ ++||++.+| ++++|+||||+|||||||+| |+..+ ..+.
T Consensus 5 ~~l~~~~l~~~~~~~~~~~l~~isl~i~~G-~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 83 (207)
T cd03369 5 GEIEVENLSVRYAPDLPPVLKNVSFKVKAG-EKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSS 83 (207)
T ss_pred CeEEEEEEEEEeCCCCcccccCceEEECCC-CEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhh
Confidence 56889999999975 234 999999999 99999999999999999999 55432 0122
Q ss_pred ceeecCCCCC-CchHHHHH-----------HHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHH
Q 004609 381 GLYLPAKNHP-RLPWFDLI-----------LADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPS 447 (742)
Q Consensus 381 G~~vPa~~~~-~i~~~d~i-----------l~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLDEp~~glDp~ 447 (742)
-.|+|+.... ..++.+++ ...++ ++..+.+||+||+ |+.++++++.+|+++||||||+|||+.
T Consensus 84 i~~v~q~~~~~~~tv~~~l~~~~~~~~~~~~~~l~----~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~ 159 (207)
T cd03369 84 LTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALR----VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYA 159 (207)
T ss_pred EEEEecCCcccCccHHHHhcccCCCCHHHHHHHhh----ccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHH
Confidence 3456665311 11222222 11111 4577899999999 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcccccceecceEEE
Q 004609 448 EGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEF 493 (742)
Q Consensus 448 ~~~aL~~all~~l~~~~~~vlitTH~~~l~~~a~~~~~i~~g~~~~ 493 (742)
....+...+. .+.+ +.|+|++||+.+....+++...+.+|.+..
T Consensus 160 ~~~~l~~~l~-~~~~-~~tiii~th~~~~~~~~d~v~~l~~g~i~~ 203 (207)
T cd03369 160 TDALIQKTIR-EEFT-NSTILTIAHRLRTIIDYDKILVMDAGEVKE 203 (207)
T ss_pred HHHHHHHHHH-HhcC-CCEEEEEeCCHHHHhhCCEEEEEECCEEEe
Confidence 9999988444 4444 789999999988655689999999998754
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=4e-23 Score=216.40 Aligned_cols=166 Identities=17% Similarity=0.214 Sum_probs=128.0
Q ss_pred cEEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh-------------------------
Q 004609 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------------- 377 (742)
Q Consensus 326 ~l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m------------------------- 377 (742)
.+.++|+++.|+++.+ ++||++.+| ++++|+|||||||||||++| |++.+-
T Consensus 4 ~l~~~~l~~~~~~~~il~~~s~~i~~G-~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~ 82 (251)
T PRK14249 4 KIKIRGVNFFYHKHQVLKNINMDFPER-QITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVN 82 (251)
T ss_pred eEEEEEEEEEECCeeEecceEEEEcCC-CEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHH
Confidence 5778999999987655 999999999 99999999999999999999 665321
Q ss_pred -hhhceeecCCCCC-CchHHHHH----------------------HHHcCCc----cccccccccchHHHH-HHHHHHHh
Q 004609 378 -SKAGLYLPAKNHP-RLPWFDLI----------------------LADIGDH----QSLEQNLSTFSGHIS-RIVDILEL 428 (742)
Q Consensus 378 -aq~G~~vPa~~~~-~i~~~d~i----------------------l~~ig~~----~~~~~~lstfSgg~k-rl~~~~~l 428 (742)
.+...|+|+.... ..++.+++ +..+++. +..++.+..||+||+ |+++++++
T Consensus 83 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral 162 (251)
T PRK14249 83 LRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVL 162 (251)
T ss_pred hhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHH
Confidence 1112355554311 01122221 2223432 346788999999999 89999999
Q ss_pred cCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 429 VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 429 ~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
+.+|+++||||||+|||+.....+.. ++..+. .+.|+|++||+.+ +..+|+++..+.+|.+...
T Consensus 163 ~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~-~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~ 227 (251)
T PRK14249 163 AIEPEVILMDEPCSALDPVSTMRIEE-LMQELK-QNYTIAIVTHNMQQAARASDWTGFLLTGDLVEY 227 (251)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHH-HHHHHh-cCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEe
Confidence 99999999999999999999999998 444555 4789999999987 5678999999999988654
|
|
| >COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.6e-23 Score=214.31 Aligned_cols=145 Identities=21% Similarity=0.308 Sum_probs=124.8
Q ss_pred cccccccCCceEEEEEeCCCCCcchHHhhHHhhhhhhhhceeecCCCCCCch----H-----------------------
Q 004609 342 PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLP----W----------------------- 394 (742)
Q Consensus 342 ~i~l~l~~g~~~~~ItGpNGsGKSTlLK~lGli~~maq~G~~vPa~~~~~i~----~----------------------- 394 (742)
++||+|++| .+++++||||+||||+||++ .|...|.+|.+.+. +
T Consensus 42 disf~IP~G-~ivgflGaNGAGKSTtLKmL--------TGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wd 112 (325)
T COG4586 42 DISFEIPKG-EIVGFLGANGAGKSTTLKML--------TGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWD 112 (325)
T ss_pred eeeeecCCC-cEEEEEcCCCCcchhhHHHH--------hCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeee
Confidence 999999999 99999999999999999999 66666666532211 0
Q ss_pred ------------------------HHHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHH
Q 004609 395 ------------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEG 449 (742)
Q Consensus 395 ------------------------~d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLDEp~~glDp~~~ 449 (742)
.+.+-..++++..+..++..||-||+ |.-++.+++++|.+|+|||||-|||...+
T Consensus 113 lp~~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq 192 (325)
T COG4586 113 LPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQ 192 (325)
T ss_pred chhhhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHH
Confidence 11122334566778899999999999 89999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEec
Q 004609 450 VALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFSL 495 (742)
Q Consensus 450 ~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~~ 495 (742)
.+|.+.+-++-.+.++||+.||||+. +..+|++++.+..|.+.||.
T Consensus 193 ~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~dg 239 (325)
T COG4586 193 ANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDG 239 (325)
T ss_pred HHHHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEeecc
Confidence 99999888888888999999999976 99999999999999999973
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.6e-23 Score=238.08 Aligned_cols=168 Identities=17% Similarity=0.174 Sum_probs=130.7
Q ss_pred cEEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhh---------------------hhhhc
Q 004609 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL---------------------MSKAG 381 (742)
Q Consensus 326 ~l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~---------------------maq~G 381 (742)
.++++|+++.|++..+ ++||++.+| ++++|+||||||||||||+| |+... ..+..
T Consensus 260 ~l~~~~l~~~~~~~~il~~vsl~i~~G-e~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 338 (490)
T PRK10938 260 RIVLNNGVVSYNDRPILHNLSWQVNPG-EHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHI 338 (490)
T ss_pred eEEEeceEEEECCeeEEeeceEEEcCC-CEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhc
Confidence 5789999999987655 999999999 99999999999999999999 65431 00112
Q ss_pred eeecCCCCC--C--ch-------------------------HHHHHHHHcCCcc-ccccccccchHHHH-HHHHHHHhcC
Q 004609 382 LYLPAKNHP--R--LP-------------------------WFDLILADIGDHQ-SLEQNLSTFSGHIS-RIVDILELVS 430 (742)
Q Consensus 382 ~~vPa~~~~--~--i~-------------------------~~d~il~~ig~~~-~~~~~lstfSgg~k-rl~~~~~l~~ 430 (742)
.|+|+.... . .. .++.++..+|+.+ ..++++++|||||+ |++++++++.
T Consensus 339 ~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~ 418 (490)
T PRK10938 339 GYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVK 418 (490)
T ss_pred eEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHhc
Confidence 344443200 0 00 1234566678876 78899999999999 8999999999
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCC-cEEEEEecChhhh-h-hcccccceecceEEEec
Q 004609 431 RESLVLIDEIGSGTDPSEGVALATSILQYLRDRV-GLAVVTTHYADLS-C-LKDKDTRFENAATEFSL 495 (742)
Q Consensus 431 ~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~-~~vlitTH~~~l~-~-~a~~~~~i~~g~~~~~~ 495 (742)
+|++|||||||+|||+.....+...+. .+++.+ .++|++|||.+.. . ++++.+.+.+|.+..+.
T Consensus 419 ~p~lllLDEPt~gLD~~~~~~l~~~L~-~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~~ 485 (490)
T PRK10938 419 HPTLLILDEPLQGLDPLNRQLVRRFVD-VLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYRYV 485 (490)
T ss_pred CCCEEEEcCccccCCHHHHHHHHHHHH-HHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEEee
Confidence 999999999999999999999999444 455555 4699999998854 4 58889999999876553
|
|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.9e-23 Score=216.20 Aligned_cols=167 Identities=23% Similarity=0.250 Sum_probs=129.7
Q ss_pred CcEEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh------------------------
Q 004609 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------------ 377 (742)
Q Consensus 325 ~~l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m------------------------ 377 (742)
..+.++|++++|++..+ ++||++.+| ++++|+||||+||||||++| |+..+-
T Consensus 9 ~~i~~~~~~~~~~~~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~ 87 (257)
T PRK14246 9 DVFNISRLYLYINDKAILKDITIKIPNN-SIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIK 87 (257)
T ss_pred hheeeeeEEEecCCceeEeceEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHH
Confidence 35788999999988776 999999999 99999999999999999999 554321
Q ss_pred -hhhceeecCCCCC--CchHHHH----------------------HHHHcCCc----cccccccccchHHHH-HHHHHHH
Q 004609 378 -SKAGLYLPAKNHP--RLPWFDL----------------------ILADIGDH----QSLEQNLSTFSGHIS-RIVDILE 427 (742)
Q Consensus 378 -aq~G~~vPa~~~~--~i~~~d~----------------------il~~ig~~----~~~~~~lstfSgg~k-rl~~~~~ 427 (742)
.+...|+|+.... .+++.++ ++..++.. +..++.+..||+||+ |++++++
T Consensus 88 ~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~lara 167 (257)
T PRK14246 88 LRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARA 167 (257)
T ss_pred HhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHH
Confidence 0112355554311 1122222 23344553 345678899999999 8999999
Q ss_pred hcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChhh-hhhcccccceecceEEEe
Q 004609 428 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL-SCLKDKDTRFENAATEFS 494 (742)
Q Consensus 428 l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~l-~~~a~~~~~i~~g~~~~~ 494 (742)
++.+|+++||||||+|||+.....+...+ ..+.+ ++|+|++||+.+. ..+|++.+.+.+|.+...
T Consensus 168 l~~~P~llllDEPt~~LD~~~~~~l~~~l-~~~~~-~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~ 233 (257)
T PRK14246 168 LALKPKVLLMDEPTSMIDIVNSQAIEKLI-TELKN-EIAIVIVSHNPQQVARVADYVAFLYNGELVEW 233 (257)
T ss_pred HHcCCCEEEEcCCCccCCHHHHHHHHHHH-HHHhc-CcEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999844 45554 5899999999884 478999999999988654
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.5e-23 Score=216.93 Aligned_cols=159 Identities=18% Similarity=0.285 Sum_probs=123.1
Q ss_pred cEEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh-------------------------
Q 004609 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------------- 377 (742)
Q Consensus 326 ~l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m------------------------- 377 (742)
.+.++|+++.|+++.+ ++||++.+| ++++|+||||||||||||+| |+..+.
T Consensus 20 ~l~~~nl~~~~~~~~~l~~vs~~i~~G-e~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~ 98 (274)
T PRK14265 20 VFEVEGVKVFYGGFLALVDVHLKIPAK-KIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVK 98 (274)
T ss_pred eEEEeeEEEEeCCeEEEeeeeeEEcCC-CEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHH
Confidence 5788999999987655 999999999 99999999999999999999 654210
Q ss_pred -hhhceeecCCCCC-CchHHHHH--------------------HHHcCC----ccccccccccchHHHH-HHHHHHHhcC
Q 004609 378 -SKAGLYLPAKNHP-RLPWFDLI--------------------LADIGD----HQSLEQNLSTFSGHIS-RIVDILELVS 430 (742)
Q Consensus 378 -aq~G~~vPa~~~~-~i~~~d~i--------------------l~~ig~----~~~~~~~lstfSgg~k-rl~~~~~l~~ 430 (742)
.+...|+|+.... ..++++++ +..++. .+..++.+++|||||+ |++++++++.
T Consensus 99 ~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~ 178 (274)
T PRK14265 99 LRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAM 178 (274)
T ss_pred HhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHhh
Confidence 1112356665321 11223322 222333 2345688899999999 8999999999
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhccccccee
Q 004609 431 RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFE 487 (742)
Q Consensus 431 ~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~ 487 (742)
+|++|||||||+|||+.....+...+.+ +.+ +.++|++||+.+ +..+|++.+.+.
T Consensus 179 ~p~lllLDEPt~~LD~~~~~~l~~~L~~-~~~-~~tiii~sH~~~~~~~~~d~i~~l~ 234 (274)
T PRK14265 179 KPDVLLMDEPCSALDPISTRQVEELCLE-LKE-QYTIIMVTHNMQQASRVADWTAFFN 234 (274)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHH-Hhc-CCEEEEEeCCHHHHHHhCCEEEEEe
Confidence 9999999999999999999999995554 555 689999999987 667999999987
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.9e-23 Score=214.40 Aligned_cols=166 Identities=17% Similarity=0.188 Sum_probs=127.2
Q ss_pred cEEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh-------------------------
Q 004609 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------------- 377 (742)
Q Consensus 326 ~l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m------------------------- 377 (742)
.+.++|+++.|+++.+ ++||++.+| ++++|+||||||||||||+| |+..+.
T Consensus 6 ~i~~~~l~~~~~~~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 84 (253)
T PRK14261 6 ILSTKNLNLWYGEKHALYDITISIPKN-RVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVA 84 (253)
T ss_pred eEEEeeeEEEECCeeeeeeeEEEECCC-cEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhh
Confidence 4678999999987665 999999999 99999999999999999999 553210
Q ss_pred -hhhceeecCCCCCC-chHHHH----------------------HHHHcCCc----cccccccccchHHHH-HHHHHHHh
Q 004609 378 -SKAGLYLPAKNHPR-LPWFDL----------------------ILADIGDH----QSLEQNLSTFSGHIS-RIVDILEL 428 (742)
Q Consensus 378 -aq~G~~vPa~~~~~-i~~~d~----------------------il~~ig~~----~~~~~~lstfSgg~k-rl~~~~~l 428 (742)
.+...|+|+..... .++.++ ++..++.. ..+++.+..||+||+ |+.+++++
T Consensus 85 ~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral 164 (253)
T PRK14261 85 LRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTL 164 (253)
T ss_pred hhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHH
Confidence 01123555553110 112221 22333332 235788899999999 89999999
Q ss_pred cCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 429 VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 429 ~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
+.+|+++||||||+|||+.....+...+ ..+.+ +.++|++||+.+ +..+++++..+.+|++...
T Consensus 165 ~~~p~lllLDEP~~gLD~~~~~~l~~~l-~~~~~-~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~ 229 (253)
T PRK14261 165 AVNPEVILMDEPCSALDPIATAKIEDLI-EDLKK-EYTVIIVTHNMQQAARVSDYTGFMYLGKLIEF 229 (253)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHH-HHHhh-CceEEEEEcCHHHHHhhCCEEEEEECCEEEEc
Confidence 9999999999999999999999998844 45555 589999999987 5578999999999988654
|
|
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.7e-23 Score=215.74 Aligned_cols=162 Identities=19% Similarity=0.279 Sum_probs=127.0
Q ss_pred EEeeeeeecCCcee-cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhh------------------hhhhceeecCC
Q 004609 328 TVGSLSKGISDFPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL------------------MSKAGLYLPAK 387 (742)
Q Consensus 328 ~~~nl~~~y~~~~v-~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~------------------maq~G~~vPa~ 387 (742)
+++||++. . .+ ++||++.+| ++++|+|||||||||||++| |+... ..+...|+|+.
T Consensus 2 ~~~~l~~~--~-~l~~vsl~i~~G-ei~~l~G~nGsGKSTLl~~l~Gl~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~ 77 (248)
T PRK03695 2 QLNDVAVS--T-RLGPLSAEVRAG-EILHLVGPNGAGKSTLLARMAGLLPGSGSIQFAGQPLEAWSAAELARHRAYLSQQ 77 (248)
T ss_pred cccccchh--c-eecceEEEEcCC-CEEEEECCCCCCHHHHHHHHcCCCCCCeEEEECCEecCcCCHHHHhhheEEeccc
Confidence 35566665 1 34 999999999 99999999999999999999 65421 01112466665
Q ss_pred CC--CCchH--------------------HHHHHHHcCCccccccccccchHHHH-HHHHHHHhcC-------CCcEEEE
Q 004609 388 NH--PRLPW--------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVS-------RESLVLI 437 (742)
Q Consensus 388 ~~--~~i~~--------------------~d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~-------~~~LlLL 437 (742)
.. ..++. ++.++..+|+.+.+++.+.+||+||+ |+.++++++. +|+++||
T Consensus 78 ~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llll 157 (248)
T PRK03695 78 QTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLL 157 (248)
T ss_pred CccCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEE
Confidence 31 11111 34556777888888999999999999 8999999987 6799999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 438 DEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 438 DEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
||||+|||+.....+.. ++..+.+.+.|+|++||+.+ +..+|+++..+.+|.+..+
T Consensus 158 DEPt~~LD~~~~~~l~~-~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~ 214 (248)
T PRK03695 158 DEPMNSLDVAQQAALDR-LLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLAS 214 (248)
T ss_pred cCCcccCCHHHHHHHHH-HHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999998 55555666889999999987 7789999999999988654
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.3e-23 Score=216.35 Aligned_cols=167 Identities=19% Similarity=0.228 Sum_probs=129.4
Q ss_pred CcEEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhh-----h-------------------
Q 004609 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-----M------------------- 377 (742)
Q Consensus 325 ~~l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~-----m------------------- 377 (742)
+.++++|+++.|++..+ ++||++.+| ++++|+|||||||||||++| |+..+ .
T Consensus 24 ~~l~~~nl~~~~~~~~il~~vs~~i~~G-e~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~ 102 (272)
T PRK14236 24 TALEVRNLNLFYGDKQALFDISMRIPKN-RVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVA 102 (272)
T ss_pred cEEEEEEEEEEECCeeEeeeEEEEEcCC-CEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHH
Confidence 46899999999987655 999999999 99999999999999999999 66431 0
Q ss_pred --hhhceeecCCCCC-CchHHHHH----------------------HHHcCCc----cccccccccchHHHH-HHHHHHH
Q 004609 378 --SKAGLYLPAKNHP-RLPWFDLI----------------------LADIGDH----QSLEQNLSTFSGHIS-RIVDILE 427 (742)
Q Consensus 378 --aq~G~~vPa~~~~-~i~~~d~i----------------------l~~ig~~----~~~~~~lstfSgg~k-rl~~~~~ 427 (742)
.+...|+|++... ..++.+++ +..++.. ..+++.+.+||+||+ |++++++
T Consensus 103 ~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~lara 182 (272)
T PRK14236 103 ELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARA 182 (272)
T ss_pred HHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHH
Confidence 1112355654311 11222222 2233432 235677899999999 8999999
Q ss_pred hcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 428 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 428 l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
++.+|+++||||||+|||+.....+...+. .+.+ +.++|++||+.+ +..+|+++..+.+|.+..+
T Consensus 183 l~~~p~lllLDEPt~gLD~~~~~~l~~~L~-~~~~-~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~ 248 (272)
T PRK14236 183 IAIEPEVLLLDEPTSALDPISTLKIEELIT-ELKS-KYTIVIVTHNMQQAARVSDYTAFMYMGKLVEY 248 (272)
T ss_pred HHCCCCEEEEeCCcccCCHHHHHHHHHHHH-HHHh-CCeEEEEeCCHHHHHhhCCEEEEEECCEEEec
Confidence 999999999999999999999999988555 4555 689999999987 5678999999999988654
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.5e-23 Score=216.25 Aligned_cols=169 Identities=20% Similarity=0.230 Sum_probs=128.3
Q ss_pred CcEEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh------------------------
Q 004609 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------------ 377 (742)
Q Consensus 325 ~~l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m------------------------ 377 (742)
+.++++|+++.|++..+ ++||++.+| ++++|+||||+||||||++| |+..+-
T Consensus 6 ~~l~~~nl~~~~~~~~il~~is~~i~~G-e~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~ 84 (261)
T PRK14258 6 PAIKVNNLSFYYDTQKILEGVSMEIYQS-KVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLN 84 (261)
T ss_pred ceEEEeeEEEEeCCeeEeeceEEEEcCC-cEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchH
Confidence 36789999999987554 999999999 99999999999999999999 665420
Q ss_pred --hhhceeecCCCC-CCchHHHHH----------------------HHHcCCc----cccccccccchHHHH-HHHHHHH
Q 004609 378 --SKAGLYLPAKNH-PRLPWFDLI----------------------LADIGDH----QSLEQNLSTFSGHIS-RIVDILE 427 (742)
Q Consensus 378 --aq~G~~vPa~~~-~~i~~~d~i----------------------l~~ig~~----~~~~~~lstfSgg~k-rl~~~~~ 427 (742)
.+...|+|+... ...++.+++ +..++.. ...++.+.+|||||+ |++++++
T Consensus 85 ~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~lara 164 (261)
T PRK14258 85 RLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARA 164 (261)
T ss_pred HhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHH
Confidence 011223444321 011222222 2233332 235678899999999 8999999
Q ss_pred hcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceec-----ceEEEe
Q 004609 428 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFEN-----AATEFS 494 (742)
Q Consensus 428 l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~-----g~~~~~ 494 (742)
++.+|+++||||||+|+|+.....+...+.+...+.+.|+|++||+.+ +..+|++++.+.+ |.+...
T Consensus 165 l~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~~ 237 (261)
T PRK14258 165 LAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVEF 237 (261)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEEe
Confidence 999999999999999999999999998555433345889999999987 6679999999998 887654
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.6e-23 Score=219.54 Aligned_cols=168 Identities=17% Similarity=0.206 Sum_probs=128.3
Q ss_pred CCcEEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhh----------------h-------
Q 004609 324 NSEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL----------------M------- 377 (742)
Q Consensus 324 ~~~l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~----------------m------- 377 (742)
...+.++||++.|++..+ ++||+|.+| ++++|+|||||||||||++| |+..+ +
T Consensus 37 ~~~l~i~~l~~~~~~~~il~~is~~i~~G-e~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~ 115 (285)
T PRK14254 37 ETVIEARDLNVFYGDEQALDDVSMDIPEN-QVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDP 115 (285)
T ss_pred CceEEEEEEEEEECCEeeEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccch
Confidence 446889999999987655 999999999 99999999999999999999 66431 0
Q ss_pred ---hhhceeecCCCCC-CchHHH--------------------HHHHHcCCc----cccccccccchHHHH-HHHHHHHh
Q 004609 378 ---SKAGLYLPAKNHP-RLPWFD--------------------LILADIGDH----QSLEQNLSTFSGHIS-RIVDILEL 428 (742)
Q Consensus 378 ---aq~G~~vPa~~~~-~i~~~d--------------------~il~~ig~~----~~~~~~lstfSgg~k-rl~~~~~l 428 (742)
.+...|+|+.... ...+.+ .++..+|+. +.+++.+++|||||+ |+++++++
T Consensus 116 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL 195 (285)
T PRK14254 116 VALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAI 195 (285)
T ss_pred HhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHH
Confidence 1112356655311 012222 223345543 346788999999999 89999999
Q ss_pred cCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChhh-hhhccccc-ceecceEEEe
Q 004609 429 VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL-SCLKDKDT-RFENAATEFS 494 (742)
Q Consensus 429 ~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~l-~~~a~~~~-~i~~g~~~~~ 494 (742)
+.+|++|||||||+|||+.....+...+. .+.+ +.++|++||+.+. ..++++.+ .+.+|.+..+
T Consensus 196 ~~~p~lLLLDEPts~LD~~~~~~l~~~L~-~~~~-~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~ 261 (285)
T PRK14254 196 APDPEVILMDEPASALDPVATSKIEDLIE-ELAE-EYTVVIVTHNMQQAARISDKTAVFLTGGELVEF 261 (285)
T ss_pred HcCCCEEEEeCCCCCCCHHHHHHHHHHHH-HHhc-CCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEe
Confidence 99999999999999999999999998544 4555 3799999999884 56899865 4688887654
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.2e-23 Score=217.01 Aligned_cols=167 Identities=17% Similarity=0.139 Sum_probs=130.1
Q ss_pred CcEEEeeeeeecC--Ccee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhh------------------hhhhc
Q 004609 325 SEMTVGSLSKGIS--DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL------------------MSKAG 381 (742)
Q Consensus 325 ~~l~~~nl~~~y~--~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~------------------maq~G 381 (742)
|.+.++|+++.|. +..+ ++||+|.+| ++++|+||||+||||||++| |++.. +.+..
T Consensus 1 g~i~~~nls~~~~~~~~~~l~~isl~I~~G-e~~~IvG~nGsGKSTLl~~L~gl~~~~G~I~i~g~~i~~~~~~~lr~~i 79 (275)
T cd03289 1 GQMTVKDLTAKYTEGGNAVLENISFSISPG-QRVGLLGRTGSGKSTLLSAFLRLLNTEGDIQIDGVSWNSVPLQKWRKAF 79 (275)
T ss_pred CeEEEEEEEEEeCCCCCcceeceEEEEcCC-CEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEhhhCCHHHHhhhE
Confidence 3578999999994 3444 999999999 99999999999999999999 66421 12234
Q ss_pred eeecCCCCCC-chH--------------HHHHHHHcCCcccccccccc-----------chHHHH-HHHHHHHhcCCCcE
Q 004609 382 LYLPAKNHPR-LPW--------------FDLILADIGDHQSLEQNLST-----------FSGHIS-RIVDILELVSRESL 434 (742)
Q Consensus 382 ~~vPa~~~~~-i~~--------------~d~il~~ig~~~~~~~~lst-----------fSgg~k-rl~~~~~l~~~~~L 434 (742)
.++|+..... .++ +...+..+|+...+++.+.. ||+||+ |+.++++++.+|++
T Consensus 80 ~~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~i 159 (275)
T cd03289 80 GVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKI 159 (275)
T ss_pred EEECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 5677765210 011 12334566766666665654 999999 89999999999999
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcccccceecceEEEe
Q 004609 435 VLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 435 lLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~l~~~a~~~~~i~~g~~~~~ 494 (742)
+||||||+|+|+.....+...+.+ +. .++|+|++||+++....|+++..+.+|.+...
T Consensus 160 lllDEpts~LD~~~~~~l~~~l~~-~~-~~~tii~isH~~~~i~~~dri~vl~~G~i~~~ 217 (275)
T cd03289 160 LLLDEPSAHLDPITYQVIRKTLKQ-AF-ADCTVILSEHRIEAMLECQRFLVIEENKVRQY 217 (275)
T ss_pred EEEECccccCCHHHHHHHHHHHHH-hc-CCCEEEEEECCHHHHHhCCEEEEecCCeEeec
Confidence 999999999999999999885554 43 37899999999986667999999999988754
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.3e-23 Score=237.83 Aligned_cols=167 Identities=13% Similarity=0.128 Sum_probs=132.2
Q ss_pred cEEEeeeeeec---CCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhh-h--------------------h
Q 004609 326 EMTVGSLSKGI---SDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-M--------------------S 378 (742)
Q Consensus 326 ~l~~~nl~~~y---~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~-m--------------------a 378 (742)
.++++|+++.| ++..+ ++||++.+| ++++|+||||||||||||+| |++.+ - .
T Consensus 257 ~l~~~~l~~~~~~~~~~~~l~~is~~i~~G-e~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~ 335 (500)
T TIGR02633 257 ILEARNLTCWDVINPHRKRVDDVSFSLRRG-EILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIR 335 (500)
T ss_pred eEEEeCCcccccccccccccccceeEEeCC-cEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHh
Confidence 46788899988 23334 999999999 99999999999999999999 66542 0 0
Q ss_pred hhceeecCCCC-----CC--------ch------------------HHHHHHHHcCCcc-ccccccccchHHHH-HHHHH
Q 004609 379 KAGLYLPAKNH-----PR--------LP------------------WFDLILADIGDHQ-SLEQNLSTFSGHIS-RIVDI 425 (742)
Q Consensus 379 q~G~~vPa~~~-----~~--------i~------------------~~d~il~~ig~~~-~~~~~lstfSgg~k-rl~~~ 425 (742)
+.-.|+|+... .. ++ .++.++..+++.. ..++.+.+|||||+ |+.++
T Consensus 336 ~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la 415 (500)
T TIGR02633 336 AGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLA 415 (500)
T ss_pred CCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHH
Confidence 11235565520 00 00 1234567778763 57899999999999 89999
Q ss_pred HHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 426 LELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 426 ~~l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
++++.+|++|||||||+|||+.....+.. ++..+.+.|.++|++|||.+ +..+|++++.+.+|.+.++
T Consensus 416 ~al~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~ 484 (500)
T TIGR02633 416 KMLLTNPRVLILDEPTRGVDVGAKYEIYK-LINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGD 484 (500)
T ss_pred HHHhhCCCEEEEcCCCCCcCHhHHHHHHH-HHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999998 55666767899999999987 6679999999999988764
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.9e-23 Score=238.62 Aligned_cols=161 Identities=17% Similarity=0.178 Sum_probs=125.4
Q ss_pred cEEEeeeeeecC-Ccee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhhh--------hhceeecCCCCC--C
Q 004609 326 EMTVGSLSKGIS-DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS--------KAGLYLPAKNHP--R 391 (742)
Q Consensus 326 ~l~~~nl~~~y~-~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~ma--------q~G~~vPa~~~~--~ 391 (742)
.++++||++.|+ ++.+ ++||++.+| ++++|+||||||||||||+| |++.+-. ....|+|+.... .
T Consensus 6 ~l~i~~l~~~y~~~~~il~~vs~~i~~G-e~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~~ 84 (556)
T PRK11819 6 IYTMNRVSKVVPPKKQILKDISLSFFPG-AKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVGYLPQEPQLDPE 84 (556)
T ss_pred EEEEeeEEEEeCCCCeeeeCceEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCC
Confidence 468899999998 6666 999999999 99999999999999999999 6654310 112366665421 2
Q ss_pred chHHHHH---------------------------------------------------------HHHcCCcccccccccc
Q 004609 392 LPWFDLI---------------------------------------------------------LADIGDHQSLEQNLST 414 (742)
Q Consensus 392 i~~~d~i---------------------------------------------------------l~~ig~~~~~~~~lst 414 (742)
+++++++ +..+|+. ..++.+++
T Consensus 85 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~ 163 (556)
T PRK11819 85 KTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCP-PWDAKVTK 163 (556)
T ss_pred CcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCC-cccCchhh
Confidence 2333332 1222332 25788999
Q ss_pred chHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEE
Q 004609 415 FSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATE 492 (742)
Q Consensus 415 fSgg~k-rl~~~~~l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~ 492 (742)
|||||+ |+.++++++.+|+++||||||+|||+.....+... +..+ ++|+|++||+.+ +..+|++++.+.+|.+.
T Consensus 164 LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~-L~~~---~~tviiisHd~~~~~~~~d~i~~l~~g~i~ 239 (556)
T PRK11819 164 LSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQF-LHDY---PGTVVAVTHDRYFLDNVAGWILELDRGRGI 239 (556)
T ss_pred cCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHH-HHhC---CCeEEEEeCCHHHHHhhcCeEEEEeCCEEE
Confidence 999999 99999999999999999999999999999988873 3333 469999999988 56789999999999875
|
|
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.5e-23 Score=204.42 Aligned_cols=166 Identities=20% Similarity=0.235 Sum_probs=129.9
Q ss_pred EEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhh-------------------hhhhceee
Q 004609 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKAGLYL 384 (742)
Q Consensus 327 l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~-------------------maq~G~~v 384 (742)
|+.+|++....++.+ ++||++.+| ++++|+||||+|||||||.+ |-+.+ ||+.-...
T Consensus 2 i~a~nls~~~~Gr~ll~~vsl~~~pG-ev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVl 80 (259)
T COG4559 2 IRAENLSYSLAGRRLLDGVSLDLRPG-EVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVL 80 (259)
T ss_pred eeeeeeEEEeecceeccCcceeccCC-cEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhc
Confidence 467889988877666 999999999 99999999999999999999 22211 22222222
Q ss_pred cCCCCCCchH-------------------------HHHHHHHcCCccccccccccchHHHH-HHHHHHHhcC------CC
Q 004609 385 PAKNHPRLPW-------------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVS------RE 432 (742)
Q Consensus 385 Pa~~~~~i~~-------------------------~d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~------~~ 432 (742)
|+.....++| .++.++..+......+...+|||||+ |+.+++.++. .+
T Consensus 81 pQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~ 160 (259)
T COG4559 81 PQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSG 160 (259)
T ss_pred ccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCCC
Confidence 3322111111 34567777777888899999999998 8988877642 34
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChhhh-hhcccccceecceEEEe
Q 004609 433 SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLS-CLKDKDTRFENAATEFS 494 (742)
Q Consensus 433 ~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~l~-~~a~~~~~i~~g~~~~~ 494 (742)
..|+|||||+.||+.....+.. +.+.+...|+.|+++-||++++ .|||+++.+.+|++...
T Consensus 161 r~L~LDEPtsaLDi~HQ~~tl~-laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~ 222 (259)
T COG4559 161 RWLFLDEPTSALDIAHQHHTLR-LARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIAS 222 (259)
T ss_pred ceEEecCCccccchHHHHHHHH-HHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeec
Confidence 5999999999999999999998 7777888889999999999965 69999999999998754
|
|
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.7e-23 Score=206.45 Aligned_cols=143 Identities=26% Similarity=0.277 Sum_probs=112.5
Q ss_pred cccccccCCceEEEEEeCCCCCcchHHhhHHhhhhhhhhcee-----ecCCCCCCchHH--HHHHHHcCCcc-ccccccc
Q 004609 342 PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLY-----LPAKNHPRLPWF--DLILADIGDHQ-SLEQNLS 413 (742)
Q Consensus 342 ~i~l~l~~g~~~~~ItGpNGsGKSTlLK~lGli~~maq~G~~-----vPa~~~~~i~~~--d~il~~ig~~~-~~~~~ls 413 (742)
++||++.+| ++++|+||||||||||||++. . ..|-. .+......+.++ .+.+..+++.. .++++++
T Consensus 13 ~isl~i~~G-~~~~l~G~nG~GKSTLl~~il-~----~~G~v~~~~~~~~~~~~~~~~~~q~~~l~~~~L~~~~~~~~~~ 86 (176)
T cd03238 13 NLDVSIPLN-VLVVVTGVSGSGKSTLVNEGL-Y----ASGKARLISFLPKFSRNKLIFIDQLQFLIDVGLGYLTLGQKLS 86 (176)
T ss_pred ceEEEEcCC-CEEEEECCCCCCHHHHHHHHh-h----cCCcEEECCcccccccccEEEEhHHHHHHHcCCCccccCCCcC
Confidence 999999999 999999999999999999981 0 11211 011000111111 34678888876 4889999
Q ss_pred cchHHHH-HHHHHHHhcCC--CcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcccccceecce
Q 004609 414 TFSGHIS-RIVDILELVSR--ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAA 490 (742)
Q Consensus 414 tfSgg~k-rl~~~~~l~~~--~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~l~~~a~~~~~i~~g~ 490 (742)
+||+||+ |++++++++.+ |+++||||||+|+|+.....+...+. .+.+.|.++|++||+.+...+++++..+.+|.
T Consensus 87 ~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~-~~~~~g~tvIivSH~~~~~~~~d~i~~l~~g~ 165 (176)
T cd03238 87 TLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIK-GLIDLGNTVILIEHNLDVLSSADWIIDFGPGS 165 (176)
T ss_pred cCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHH-HHHhCCCEEEEEeCCHHHHHhCCEEEEECCCC
Confidence 9999999 89999999999 99999999999999999999998554 45556899999999998777899888887654
Q ss_pred E
Q 004609 491 T 491 (742)
Q Consensus 491 ~ 491 (742)
.
T Consensus 166 ~ 166 (176)
T cd03238 166 G 166 (176)
T ss_pred C
Confidence 3
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.5e-23 Score=208.85 Aligned_cols=133 Identities=22% Similarity=0.249 Sum_probs=105.6
Q ss_pred cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh---------------------hhhceeecCCCC---CCchH--
Q 004609 342 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM---------------------SKAGLYLPAKNH---PRLPW-- 394 (742)
Q Consensus 342 ~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m---------------------aq~G~~vPa~~~---~~i~~-- 394 (742)
++||++.+| ++++|+||||||||||||+| |+..+- .+...|+|+... ...++
T Consensus 10 ~vsl~i~~G-e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~tv~~ 88 (190)
T TIGR01166 10 GLNFAAERG-EVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAADVDQ 88 (190)
T ss_pred ceeEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccccHHH
Confidence 899999999 99999999999999999999 554320 112246666531 11111
Q ss_pred -------------------HHHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHH
Q 004609 395 -------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALAT 454 (742)
Q Consensus 395 -------------------~d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLDEp~~glDp~~~~aL~~ 454 (742)
++.++..+|+.+..++.+++||+||+ |++++++++.+|+++||||||+|||+.....+..
T Consensus 89 nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~ 168 (190)
T TIGR01166 89 DVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLA 168 (190)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH
Confidence 22345567777788899999999999 8999999999999999999999999999999998
Q ss_pred HHHHHHhcCCcEEEEEecChhh
Q 004609 455 SILQYLRDRVGLAVVTTHYADL 476 (742)
Q Consensus 455 all~~l~~~~~~vlitTH~~~l 476 (742)
.+ ..+.+.|.++|++||+.+.
T Consensus 169 ~l-~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 169 IL-RRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred HH-HHHHHcCCEEEEEeecccc
Confidence 54 4556668899999999753
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.3e-23 Score=206.83 Aligned_cols=168 Identities=25% Similarity=0.330 Sum_probs=135.0
Q ss_pred cEEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhh-------------------hhhhc-e
Q 004609 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKAG-L 382 (742)
Q Consensus 326 ~l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~-------------------maq~G-~ 382 (742)
.++++||+..||...+ ++||++++| ++++|+||||+|||||||+| |++.. .++.| .
T Consensus 3 mL~v~~l~~~YG~~~~L~gvsl~v~~G-eiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~ 81 (237)
T COG0410 3 MLEVENLSAGYGKIQALRGVSLEVERG-EIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIA 81 (237)
T ss_pred ceeEEeEeecccceeEEeeeeeEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeE
Confidence 4678999999998666 999999999 99999999999999999999 66643 23334 3
Q ss_pred eecCCCC--CCchHHHH--------------------HHHHcC-CccccccccccchHHHH-HHHHHHHhcCCCcEEEEc
Q 004609 383 YLPAKNH--PRLPWFDL--------------------ILADIG-DHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLID 438 (742)
Q Consensus 383 ~vPa~~~--~~i~~~d~--------------------il~~ig-~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLD 438 (742)
|||+... ..+++-++ +|+.|- +.+..++...+|||||+ .++++++++.+|++||||
T Consensus 82 ~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLLLD 161 (237)
T COG0410 82 YVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLD 161 (237)
T ss_pred eCcccccchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEec
Confidence 6666441 23333333 444332 44566788999999999 688889999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcC-CcEEEEEecChhhh-hhcccccceecceEEEec
Q 004609 439 EIGSGTDPSEGVALATSILQYLRDR-VGLAVVTTHYADLS-CLKDKDTRFENAATEFSL 495 (742)
Q Consensus 439 Ep~~glDp~~~~aL~~all~~l~~~-~~~vlitTH~~~l~-~~a~~~~~i~~g~~~~~~ 495 (742)
||+.||-|.-...|.. ++..+++. |.||++|.++...+ .++|+.+.+.+|.+.+..
T Consensus 162 EPs~GLaP~iv~~I~~-~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G 219 (237)
T COG0410 162 EPSEGLAPKIVEEIFE-AIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSG 219 (237)
T ss_pred CCccCcCHHHHHHHHH-HHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEec
Confidence 9999999999999998 55667755 66999999998754 699999999999998763
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.7e-23 Score=237.49 Aligned_cols=167 Identities=17% Similarity=0.191 Sum_probs=131.7
Q ss_pred cEEEeeeeeecCC----cee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhh-----h----------------
Q 004609 326 EMTVGSLSKGISD----FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-----M---------------- 377 (742)
Q Consensus 326 ~l~~~nl~~~y~~----~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~-----m---------------- 377 (742)
.++++|+++.|++ ..+ ++||++.+| ++++|+||||||||||||+| |++.+ .
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~G-e~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~ 83 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAG-ETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASE 83 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCC-CEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCH
Confidence 4789999999963 334 999999999 99999999999999999999 76642 0
Q ss_pred ------h-hhceeecCCCCC----CchH----------------------HHHHHHHcCCcc---ccccccccchHHHH-
Q 004609 378 ------S-KAGLYLPAKNHP----RLPW----------------------FDLILADIGDHQ---SLEQNLSTFSGHIS- 420 (742)
Q Consensus 378 ------a-q~G~~vPa~~~~----~i~~----------------------~d~il~~ig~~~---~~~~~lstfSgg~k- 420 (742)
. +.-.|+|+.... .+.+ ++.++..+|+.+ .+++.+++|||||+
T Consensus 84 ~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~q 163 (529)
T PRK15134 84 QTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQ 163 (529)
T ss_pred HHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHH
Confidence 0 112466776310 0111 123455566654 35889999999999
Q ss_pred HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 421 RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 421 rl~~~~~l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~-~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
|+.++++++.+|++|||||||+||||.....+.. ++..+.+ .|.|+|++||+.+ +..+|+++..+.+|.+..+
T Consensus 164 rv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~-~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~~~ 238 (529)
T PRK15134 164 RVMIAMALLTRPELLIADEPTTALDVSVQAQILQ-LLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQ 238 (529)
T ss_pred HHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHH-HHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEEEe
Confidence 8999999999999999999999999999999998 5555654 4889999999987 5679999999999988654
|
|
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.3e-23 Score=211.60 Aligned_cols=162 Identities=17% Similarity=0.163 Sum_probs=121.3
Q ss_pred EEeeeeeecCC-cee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh-----------------------hhh
Q 004609 328 TVGSLSKGISD-FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------------SKA 380 (742)
Q Consensus 328 ~~~nl~~~y~~-~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m-----------------------aq~ 380 (742)
.+.|++++|+. ..+ ++||++.+| ++++|+|||||||||||++| |++.+- .+.
T Consensus 2 ~~~~~~~~~~~~~~il~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 80 (218)
T cd03290 2 QVTNGYFSWGSGLATLSNINIRIPTG-QLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYS 80 (218)
T ss_pred eeeeeEEecCCCCcceeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcce
Confidence 46788999964 334 999999999 99999999999999999999 565320 011
Q ss_pred ceeecCCCCC-CchHHHH--------------HHHHcCCccc-----------cccccccchHHHH-HHHHHHHhcCCCc
Q 004609 381 GLYLPAKNHP-RLPWFDL--------------ILADIGDHQS-----------LEQNLSTFSGHIS-RIVDILELVSRES 433 (742)
Q Consensus 381 G~~vPa~~~~-~i~~~d~--------------il~~ig~~~~-----------~~~~lstfSgg~k-rl~~~~~l~~~~~ 433 (742)
-.|+|+.... ..+..++ ++..+++... ++..+.+||+||+ |+.++++++.+|+
T Consensus 81 i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~ 160 (218)
T cd03290 81 VAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTN 160 (218)
T ss_pred EEEEcCCCccccccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCC
Confidence 2355555310 1122222 2233333221 3457889999999 8999999999999
Q ss_pred EEEEcCCCCCCCHHHHHHHHHH-HHHHHhcCCcEEEEEecChhhhhhcccccceecce
Q 004609 434 LVLIDEIGSGTDPSEGVALATS-ILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAA 490 (742)
Q Consensus 434 LlLLDEp~~glDp~~~~aL~~a-ll~~l~~~~~~vlitTH~~~l~~~a~~~~~i~~g~ 490 (742)
++||||||+|||+.....+... ++..+.+.+.|+|++||+.+....+++...+.+|+
T Consensus 161 illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 161 IVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred EEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 9999999999999999999884 77777777889999999988666788887777653
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=6e-23 Score=217.75 Aligned_cols=167 Identities=20% Similarity=0.216 Sum_probs=128.7
Q ss_pred CcEEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhh-----hh-------------------
Q 004609 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLAS-----LM------------------- 377 (742)
Q Consensus 325 ~~l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~-----~m------------------- 377 (742)
-.+.++|+++.|++..+ ++||++.+| ++++|+||||||||||||+| |++. .-
T Consensus 23 ~~l~~~~l~~~~~~~~il~~vsl~i~~G-e~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 101 (271)
T PRK14238 23 VVFDTQNLNLWYGEDHALKNINLDIHEN-EVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVE 101 (271)
T ss_pred eEEEEeeeEEEECCcceeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHH
Confidence 36889999999987555 999999999 99999999999999999999 7653 10
Q ss_pred --hhhceeecCCCCC-CchHHHHHH----------------------HHc----CCccccccccccchHHHH-HHHHHHH
Q 004609 378 --SKAGLYLPAKNHP-RLPWFDLIL----------------------ADI----GDHQSLEQNLSTFSGHIS-RIVDILE 427 (742)
Q Consensus 378 --aq~G~~vPa~~~~-~i~~~d~il----------------------~~i----g~~~~~~~~lstfSgg~k-rl~~~~~ 427 (742)
.+...|+|++... ..++++++. ..+ +..+.+++++..|||||+ |++++++
T Consensus 102 ~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~lara 181 (271)
T PRK14238 102 ELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARC 181 (271)
T ss_pred HHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHH
Confidence 1112355655321 012233321 111 122345678899999999 8999999
Q ss_pred hcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 428 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 428 l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
++.+|+++||||||+|||+.....+...+ ..+.+ +.++|++||+.+ +..+|++++.+.+|.+...
T Consensus 182 L~~~p~lllLDEPt~~LD~~~~~~l~~~l-~~~~~-~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~ 247 (271)
T PRK14238 182 LAIEPDVILMDEPTSALDPISTLKVEELV-QELKK-DYSIIIVTHNMQQAARISDKTAFFLNGYVNEY 247 (271)
T ss_pred HHcCCCEEEEeCCCCcCCHHHHHHHHHHH-HHHHc-CCEEEEEEcCHHHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999999854 45555 689999999988 5678999999999988654
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.8e-23 Score=221.87 Aligned_cols=168 Identities=18% Similarity=0.190 Sum_probs=131.1
Q ss_pred CcEEEeeeeeecCC----ce-e-cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh--------------------
Q 004609 325 SEMTVGSLSKGISD----FP-V-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------- 377 (742)
Q Consensus 325 ~~l~~~nl~~~y~~----~~-v-~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m-------------------- 377 (742)
..++++||++.|+. .. + ++||+|.+| ++++|+|+||||||||+++| |++..-
T Consensus 11 ~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~G-e~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~ 89 (330)
T PRK09473 11 ALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAG-ETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEK 89 (330)
T ss_pred ceEEEeCeEEEEecCCCCEEEEeeeEEEEcCC-CEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHH
Confidence 36789999999942 22 3 999999999 99999999999999999999 666320
Q ss_pred ------hhhceeecCCCC----CCchH----------------------HHHHHHHcCCcc---ccccccccchHHHH-H
Q 004609 378 ------SKAGLYLPAKNH----PRLPW----------------------FDLILADIGDHQ---SLEQNLSTFSGHIS-R 421 (742)
Q Consensus 378 ------aq~G~~vPa~~~----~~i~~----------------------~d~il~~ig~~~---~~~~~lstfSgg~k-r 421 (742)
.+...++|++.. ..+.+ ...++..+|+.+ .+++.++.|||||+ |
T Consensus 90 ~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QR 169 (330)
T PRK09473 90 ELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQR 169 (330)
T ss_pred HHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHH
Confidence 012346777641 11111 122355566543 35678999999999 9
Q ss_pred HHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEecChhhh-hhcccccceecceEEEe
Q 004609 422 IVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYADLS-CLKDKDTRFENAATEFS 494 (742)
Q Consensus 422 l~~~~~l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~-~~~~vlitTH~~~l~-~~a~~~~~i~~g~~~~~ 494 (742)
+.++++++.+|+|||+||||+|||+..+..+...+ ..+.+ .|.++|++|||+.+. .++|++..+.+|.+...
T Consensus 170 v~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL-~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~ 243 (330)
T PRK09473 170 VMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLL-NELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEY 243 (330)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHH-HHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999944 44544 588999999998854 68999999999998654
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.9e-23 Score=239.79 Aligned_cols=162 Identities=24% Similarity=0.237 Sum_probs=129.5
Q ss_pred cEEEeeeeeecCCcee-cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhhh------hhceeecCCCC--CCchH-
Q 004609 326 EMTVGSLSKGISDFPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS------KAGLYLPAKNH--PRLPW- 394 (742)
Q Consensus 326 ~l~~~nl~~~y~~~~v-~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~ma------q~G~~vPa~~~--~~i~~- 394 (742)
.++++|+++.|++..+ ++++++.+| ++++|+||||+|||||||+| |++.+-. ....|+|+... ..+++
T Consensus 340 ~l~~~~ls~~~~~~~l~~~s~~i~~G-eiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~~~i~y~~Q~~~~~~~~tv~ 418 (590)
T PRK13409 340 LVEYPDLTKKLGDFSLEVEGGEIYEG-EVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKISYKPQYIKPDYDGTVE 418 (590)
T ss_pred EEEEcceEEEECCEEEEecceEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEeeeEEEecccccCCCCCcHH
Confidence 4678899999987555 889999999 99999999999999999999 6654321 11235666532 11111
Q ss_pred ---------------HHHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHH
Q 004609 395 ---------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQ 458 (742)
Q Consensus 395 ---------------~d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLDEp~~glDp~~~~aL~~all~ 458 (742)
.+.++..+|+.+..++++++|||||+ |+++|++++.+|+++||||||+|||+.....+...+.+
T Consensus 419 e~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~ 498 (590)
T PRK13409 419 DLLRSITDDLGSSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRR 498 (590)
T ss_pred HHHHHHhhhcChHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence 23456778888888999999999999 99999999999999999999999999999999995555
Q ss_pred HHhcCCcEEEEEecChh-hhhhcccccceec
Q 004609 459 YLRDRVGLAVVTTHYAD-LSCLKDKDTRFEN 488 (742)
Q Consensus 459 ~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~ 488 (742)
...+.+.++|++|||.+ +..+|++++.+.+
T Consensus 499 l~~~~g~tviivsHD~~~~~~~aDrvivl~~ 529 (590)
T PRK13409 499 IAEEREATALVVDHDIYMIDYISDRLMVFEG 529 (590)
T ss_pred HHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC
Confidence 44445889999999988 5568999888765
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.8e-22 Score=212.51 Aligned_cols=167 Identities=20% Similarity=0.232 Sum_probs=127.4
Q ss_pred CcEEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhh----------------h--------
Q 004609 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL----------------M-------- 377 (742)
Q Consensus 325 ~~l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~----------------m-------- 377 (742)
+.+.++|+++.|++..+ ++||++.+| ++++|+||||||||||||+| |+..+ +
T Consensus 6 ~~l~~~~l~~~~~~~~il~~isl~i~~G-e~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 84 (259)
T PRK14260 6 PAIKVKDLSFYYNTSKAIEGISMDIYRN-KVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININ 84 (259)
T ss_pred ceEEEEEEEEEECCeEeecceEEEEcCC-CEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchH
Confidence 36789999999987655 999999999 99999999999999999999 65431 0
Q ss_pred --hhhceeecCCCCC-CchHHHH----------------------HHHHcCC----ccccccccccchHHHH-HHHHHHH
Q 004609 378 --SKAGLYLPAKNHP-RLPWFDL----------------------ILADIGD----HQSLEQNLSTFSGHIS-RIVDILE 427 (742)
Q Consensus 378 --aq~G~~vPa~~~~-~i~~~d~----------------------il~~ig~----~~~~~~~lstfSgg~k-rl~~~~~ 427 (742)
.+...|+|+.... ..++.++ ++..+|. .+..++.+.+||+||+ |++++++
T Consensus 85 ~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lara 164 (259)
T PRK14260 85 RLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARA 164 (259)
T ss_pred hhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHH
Confidence 0112345554311 1122222 2333344 2356778899999999 8999999
Q ss_pred hcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhccccccee-----cceEEEe
Q 004609 428 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFE-----NAATEFS 494 (742)
Q Consensus 428 l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~-----~g~~~~~ 494 (742)
++.+|+++||||||+|+|+.....+...+.+ +.+ +.|+|++||+.+ +..+|+++..+. +|.+...
T Consensus 165 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~-~~~-~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~ 235 (259)
T PRK14260 165 LAIKPKVLLMDEPCSALDPIATMKVEELIHS-LRS-ELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEF 235 (259)
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHH-Hhc-CCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEe
Confidence 9999999999999999999999999985554 555 589999999987 567899998887 4777644
|
|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2e-22 Score=210.85 Aligned_cols=165 Identities=21% Similarity=0.249 Sum_probs=126.8
Q ss_pred EEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhh--h------------------------h
Q 004609 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLAS--L------------------------M 377 (742)
Q Consensus 327 l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~--~------------------------m 377 (742)
+.++||++.|+++.+ ++||++.+| ++++|+||||+||||||++| |+.. . .
T Consensus 4 l~~~~v~~~~~~~~~l~~~s~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~ 82 (250)
T PRK14266 4 IEVENLNTYFDDAHILKNVNLDIPKN-SVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVEL 82 (250)
T ss_pred EEEEeEEEEeCCeEEEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHH
Confidence 678999999987655 999999999 99999999999999999999 6532 0 0
Q ss_pred hhhceeecCCCCC-CchHHHH----------------------HHHHcCCc----cccccccccchHHHH-HHHHHHHhc
Q 004609 378 SKAGLYLPAKNHP-RLPWFDL----------------------ILADIGDH----QSLEQNLSTFSGHIS-RIVDILELV 429 (742)
Q Consensus 378 aq~G~~vPa~~~~-~i~~~d~----------------------il~~ig~~----~~~~~~lstfSgg~k-rl~~~~~l~ 429 (742)
.+...|+|+.... ..+..++ ++..+|+. ...+++...||+||+ |++++++++
T Consensus 83 ~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~ 162 (250)
T PRK14266 83 RKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIA 162 (250)
T ss_pred hhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHH
Confidence 1123466655321 0112222 22333432 234677899999999 899999999
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 430 SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 430 ~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
.+|+++||||||+|+|+.....+...+. .+.+ +.|+|++||+.+ +..++++...+.+|++..+
T Consensus 163 ~~p~llllDEP~~gLD~~~~~~l~~~l~-~~~~-~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~ 226 (250)
T PRK14266 163 VSPEVILMDEPCSALDPISTTKIEDLIH-KLKE-DYTIVIVTHNMQQATRVSKYTSFFLNGEIIES 226 (250)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHH-HHhc-CCeEEEEECCHHHHHhhcCEEEEEECCeEEEe
Confidence 9999999999999999999999988554 4554 789999999987 6678888888999988765
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.2e-23 Score=235.67 Aligned_cols=168 Identities=19% Similarity=0.230 Sum_probs=130.5
Q ss_pred cEEEeeeeeecCC-----cee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhh------h--h-----------
Q 004609 326 EMTVGSLSKGISD-----FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL------M--S----------- 378 (742)
Q Consensus 326 ~l~~~nl~~~y~~-----~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~------m--a----------- 378 (742)
.++++||++.|++ ..+ ++||++.+| ++++|+||||||||||||+| |++.+ + .
T Consensus 279 ~l~~~~l~~~~~~~~~~~~~il~~is~~i~~G-e~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~ 357 (520)
T TIGR03269 279 IIKVRNVSKRYISVDRGVVKAVDNVSLEVKEG-EIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGP 357 (520)
T ss_pred eEEEeccEEEeccCCCCCceEEeeEEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccch
Confidence 4678899999942 334 999999999 99999999999999999999 66531 1 0
Q ss_pred -------hhceeecCCCC--CCchHHH--------------------HHHHHcCCcc-----ccccccccchHHHH-HHH
Q 004609 379 -------KAGLYLPAKNH--PRLPWFD--------------------LILADIGDHQ-----SLEQNLSTFSGHIS-RIV 423 (742)
Q Consensus 379 -------q~G~~vPa~~~--~~i~~~d--------------------~il~~ig~~~-----~~~~~lstfSgg~k-rl~ 423 (742)
+.-.|+|+... ..+.+++ .++..+|+.+ ..++++++|||||+ |++
T Consensus 358 ~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~ 437 (520)
T TIGR03269 358 DGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVA 437 (520)
T ss_pred hhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHH
Confidence 11246676532 1112222 2355567653 46889999999999 999
Q ss_pred HHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 424 DILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 424 ~~~~l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
++++++.+|++|||||||+|||+.....+...+.+...+.|.++|++|||.+ +..+|++++.+.+|.+...
T Consensus 438 laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~ 509 (520)
T TIGR03269 438 LAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKI 509 (520)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999555433445889999999987 5678999999999987654
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.9e-23 Score=226.71 Aligned_cols=163 Identities=17% Similarity=0.145 Sum_probs=130.3
Q ss_pred eeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh-------h--------------------hh
Q 004609 331 SLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------S--------------------KA 380 (742)
Q Consensus 331 nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m-------a--------------------q~ 380 (742)
++.+.||...+ ++||++.+| ++++|+||||||||||||+| |++.+- . +.
T Consensus 29 ~~~~~~g~~~~l~~vsf~i~~G-ei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~ 107 (382)
T TIGR03415 29 EILDETGLVVGVANASLDIEEG-EICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHR 107 (382)
T ss_pred HHHHhhCCEEEEEeeEEEEcCC-CEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCC
Confidence 56677776554 999999999 99999999999999999999 554320 0 12
Q ss_pred ceeecCCCCC--CchHH---------------------HHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEEE
Q 004609 381 GLYLPAKNHP--RLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVL 436 (742)
Q Consensus 381 G~~vPa~~~~--~i~~~---------------------d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlL 436 (742)
..|+|+.... .+++. ..++..+|+.+..++.++.|||||+ |+.++++++.+|+++|
T Consensus 108 i~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILL 187 (382)
T TIGR03415 108 VSMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILL 187 (382)
T ss_pred EEEEECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 3456665421 11222 2346667888888999999999999 8999999999999999
Q ss_pred EcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 437 IDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 437 LDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
|||||+||||.....+...+.+...+.+.|+|++|||.+ +..+++++..+.+|.+...
T Consensus 188 lDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~ 246 (382)
T TIGR03415 188 MDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQH 246 (382)
T ss_pred EECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999666544445899999999988 4689999999999988654
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.1e-22 Score=212.72 Aligned_cols=167 Identities=18% Similarity=0.205 Sum_probs=129.1
Q ss_pred CcEEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhh-------------------------
Q 004609 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL------------------------- 376 (742)
Q Consensus 325 ~~l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~------------------------- 376 (742)
+.+.++|+++.|+++.+ ++||++.+| ++++|+|||||||||||++| |+..+
T Consensus 15 ~~l~~~~l~~~~~~~~vl~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~ 93 (265)
T PRK14252 15 QKSEVNKLNFYYGGYQALKNINMMVHEK-QVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVD 93 (265)
T ss_pred ceEEEEEEEEEECCeeeeeeeEEEEcCC-cEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccC
Confidence 56889999999987665 999999999 99999999999999999999 66431
Q ss_pred ---hhhhceeecCCCCC-CchHHHH----------------------HHHHcCC----ccccccccccchHHHH-HHHHH
Q 004609 377 ---MSKAGLYLPAKNHP-RLPWFDL----------------------ILADIGD----HQSLEQNLSTFSGHIS-RIVDI 425 (742)
Q Consensus 377 ---maq~G~~vPa~~~~-~i~~~d~----------------------il~~ig~----~~~~~~~lstfSgg~k-rl~~~ 425 (742)
+.+...|+|+.... ..++.++ ++..++. .+..++...+||+||+ |+.++
T Consensus 94 ~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la 173 (265)
T PRK14252 94 PIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIA 173 (265)
T ss_pred HHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHH
Confidence 01112356655311 0122222 2223333 2345677899999999 89999
Q ss_pred HHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 426 LELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 426 ~~l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
++++.+|+++||||||+|||+.....+...+ ..+.+ +.|+|++||+.+ +..+|+++..+.+|.+..+
T Consensus 174 ral~~~p~llllDEPt~gLD~~~~~~l~~~l-~~l~~-~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~ 241 (265)
T PRK14252 174 RALATDPEILLFDEPTSALDPIATASIEELI-SDLKN-KVTILIVTHNMQQAARVSDYTAYMYMGELIEF 241 (265)
T ss_pred HHHHcCCCEEEEeCCCccCCHHHHHHHHHHH-HHHHh-CCEEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999844 55555 589999999987 5579999999999988654
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.3e-23 Score=237.70 Aligned_cols=163 Identities=22% Similarity=0.295 Sum_probs=128.2
Q ss_pred CcEEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh------hh--hceeecCCCC---C
Q 004609 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------SK--AGLYLPAKNH---P 390 (742)
Q Consensus 325 ~~l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m------aq--~G~~vPa~~~---~ 390 (742)
..++++|+++.|+++.+ ++||++.+| ++++|+||||||||||||+| |++.+. .. ...|+|+... .
T Consensus 321 ~~l~~~~l~~~~~~~~~l~~isl~i~~G-e~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~~~i~~v~q~~~~~~~ 399 (552)
T TIGR03719 321 KVIEAENLSKGFGDKLLIDDLSFKLPPG-GIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLAYVDQSRDALDP 399 (552)
T ss_pred eEEEEeeEEEEECCeeeeccceEEEcCC-CEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCceEEEEEeCCccccCC
Confidence 35789999999987655 999999999 99999999999999999999 665432 10 1236666521 1
Q ss_pred CchHH-------------------HHHHHHcCCcc-ccccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHH
Q 004609 391 RLPWF-------------------DLILADIGDHQ-SLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEG 449 (742)
Q Consensus 391 ~i~~~-------------------d~il~~ig~~~-~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLDEp~~glDp~~~ 449 (742)
.++++ ..++..+|+.. ..++.+++|||||+ |+.++++++.+|+++||||||+|||+...
T Consensus 400 ~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~ 479 (552)
T TIGR03719 400 NKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETL 479 (552)
T ss_pred CCcHHHHHHhhccccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Confidence 12222 23456677754 56889999999999 99999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceec-ceEE
Q 004609 450 VALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFEN-AATE 492 (742)
Q Consensus 450 ~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~-g~~~ 492 (742)
..+...+.++ ++++|++|||.+ +..+|++++.+.+ |.+.
T Consensus 480 ~~l~~~l~~~----~~~viivsHd~~~~~~~~d~i~~l~~~~~~~ 520 (552)
T TIGR03719 480 RALEEALLEF----AGCAVVISHDRWFLDRIATHILAFEGDSHVE 520 (552)
T ss_pred HHHHHHHHHC----CCeEEEEeCCHHHHHHhCCEEEEEECCCeEE
Confidence 9999855443 358999999988 5678999998886 4554
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-22 Score=235.87 Aligned_cols=162 Identities=17% Similarity=0.187 Sum_probs=124.8
Q ss_pred cEEEeeeeeecC-Ccee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhhh--------hhceeecCCCCC--C
Q 004609 326 EMTVGSLSKGIS-DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS--------KAGLYLPAKNHP--R 391 (742)
Q Consensus 326 ~l~~~nl~~~y~-~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~ma--------q~G~~vPa~~~~--~ 391 (742)
.++++||++.|+ ++++ ++||++.+| ++++|+||||||||||||+| |++.+-. ....|+|+.... .
T Consensus 4 ~i~~~nls~~~~~~~~il~~is~~i~~G-e~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~~ 82 (552)
T TIGR03719 4 IYTMNRVSKVVPPKKEILKDISLSFFPG-AKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQLDPT 82 (552)
T ss_pred EEEEeeEEEecCCCCeeecCceEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCCCCC
Confidence 478999999997 6555 999999999 99999999999999999999 6653310 112366665421 2
Q ss_pred chHHHHHH---------------------------------------------------------HHcCCcccccccccc
Q 004609 392 LPWFDLIL---------------------------------------------------------ADIGDHQSLEQNLST 414 (742)
Q Consensus 392 i~~~d~il---------------------------------------------------------~~ig~~~~~~~~lst 414 (742)
+++.+++. ..+|+. ..++.+++
T Consensus 83 ~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~ 161 (552)
T TIGR03719 83 KTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCP-PWDADVTK 161 (552)
T ss_pred CcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCC-cccCchhh
Confidence 23333321 112222 24678999
Q ss_pred chHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEE
Q 004609 415 FSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATE 492 (742)
Q Consensus 415 fSgg~k-rl~~~~~l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~ 492 (742)
|||||+ |+.++++++.+|++|||||||+|||+.....|...+.++ ++++|++||+.+ +..+|++++.+.+|.+.
T Consensus 162 LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~----~~tvIiisHd~~~~~~~~d~v~~l~~g~i~ 237 (552)
T TIGR03719 162 LSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY----PGTVVAVTHDRYFLDNVAGWILELDRGRGI 237 (552)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC----CCeEEEEeCCHHHHHhhcCeEEEEECCEEE
Confidence 999999 999999999999999999999999999999888744332 469999999988 56789999999999875
Q ss_pred E
Q 004609 493 F 493 (742)
Q Consensus 493 ~ 493 (742)
+
T Consensus 238 ~ 238 (552)
T TIGR03719 238 P 238 (552)
T ss_pred E
Confidence 4
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2e-22 Score=217.32 Aligned_cols=167 Identities=19% Similarity=0.213 Sum_probs=127.6
Q ss_pred CcEEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhh-------------------------
Q 004609 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL------------------------- 376 (742)
Q Consensus 325 ~~l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~------------------------- 376 (742)
..+.++||++.|++..+ ++||++.+| ++++|+|||||||||||++| |+...
T Consensus 44 ~~l~i~nl~~~~~~~~iL~~is~~i~~G-e~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~ 122 (305)
T PRK14264 44 AKLSVEDLDVYYGDDHALKGVSMDIPEK-SVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLV 122 (305)
T ss_pred ceEEEEEEEEEeCCeeeeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHH
Confidence 46899999999987655 999999999 99999999999999999999 66531
Q ss_pred -hhhhceeecCCCCC-CchHHHHH----------------------------------HHHcCC----ccccccccccch
Q 004609 377 -MSKAGLYLPAKNHP-RLPWFDLI----------------------------------LADIGD----HQSLEQNLSTFS 416 (742)
Q Consensus 377 -maq~G~~vPa~~~~-~i~~~d~i----------------------------------l~~ig~----~~~~~~~lstfS 416 (742)
..+...|+|+.... ..++++++ +..+++ ...+++.+.+||
T Consensus 123 ~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS 202 (305)
T PRK14264 123 ELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLS 202 (305)
T ss_pred HHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccCC
Confidence 01123466665320 11222222 222333 234467889999
Q ss_pred HHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccc-cceecceEEE
Q 004609 417 GHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKD-TRFENAATEF 493 (742)
Q Consensus 417 gg~k-rl~~~~~l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~-~~i~~g~~~~ 493 (742)
|||+ |++++++++.+|++|||||||+|||+.....+...+ ..+.+ +.++|++||+.+ +..+|+++ ..+.+|.+..
T Consensus 203 gGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L-~~~~~-~~tiiivtH~~~~i~~~~d~i~~~l~~G~i~~ 280 (305)
T PRK14264 203 GGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLI-EELAE-EYTVVVVTHNMQQAARISDQTAVFLTGGELVE 280 (305)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH-HHHhc-CCEEEEEEcCHHHHHHhcCEEEEEecCCEEEE
Confidence 9999 999999999999999999999999999999998844 45555 479999999987 46789986 4568888865
Q ss_pred e
Q 004609 494 S 494 (742)
Q Consensus 494 ~ 494 (742)
+
T Consensus 281 ~ 281 (305)
T PRK14264 281 Y 281 (305)
T ss_pred e
Confidence 4
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.4e-23 Score=241.66 Aligned_cols=163 Identities=17% Similarity=0.178 Sum_probs=128.8
Q ss_pred CcEEEeeeeeecCC-cee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhhh--------hhceeecCCCCCCc
Q 004609 325 SEMTVGSLSKGISD-FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS--------KAGLYLPAKNHPRL 392 (742)
Q Consensus 325 ~~l~~~nl~~~y~~-~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~ma--------q~G~~vPa~~~~~i 392 (742)
..+.++||++.|++ ..+ ++||++.+| ++++|+||||||||||||+| |++.+-. ....|+|+.....+
T Consensus 507 ~~L~~~~ls~~y~~~~~il~~vsl~i~~G-e~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~~igyv~Q~~~~~l 585 (718)
T PLN03073 507 PIISFSDASFGYPGGPLLFKNLNFGIDLD-SRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMAVFSQHHVDGL 585 (718)
T ss_pred ceEEEEeeEEEeCCCCeeEeccEEEEcCC-CEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCceeEEEEeccccccC
Confidence 46899999999964 434 999999999 99999999999999999999 6654311 01124555321111
Q ss_pred h-------------------HHHHHHHHcCCcc-ccccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHH
Q 004609 393 P-------------------WFDLILADIGDHQ-SLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVA 451 (742)
Q Consensus 393 ~-------------------~~d~il~~ig~~~-~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLDEp~~glDp~~~~a 451 (742)
. .+..++..+|+.+ ..++++++|||||+ |++++++++.+|++|||||||+|||+.....
T Consensus 586 ~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~ 665 (718)
T PLN03073 586 DLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEA 665 (718)
T ss_pred CcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHH
Confidence 0 1234566778764 57889999999999 9999999999999999999999999999988
Q ss_pred HHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEE
Q 004609 452 LATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATE 492 (742)
Q Consensus 452 L~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~ 492 (742)
+..++.++ ++++|++|||.+ +..+|++++.+.+|.+.
T Consensus 666 l~~~L~~~----~gtvIivSHd~~~i~~~~drv~~l~~G~i~ 703 (718)
T PLN03073 666 LIQGLVLF----QGGVLMVSHDEHLISGSVDELWVVSEGKVT 703 (718)
T ss_pred HHHHHHHc----CCEEEEEECCHHHHHHhCCEEEEEECCEEE
Confidence 87755443 459999999987 56689999999999886
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-22 Score=233.80 Aligned_cols=166 Identities=16% Similarity=0.194 Sum_probs=132.2
Q ss_pred cEEEeeeeeecCCcee-cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh--------------------hhhcee
Q 004609 326 EMTVGSLSKGISDFPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------SKAGLY 383 (742)
Q Consensus 326 ~l~~~nl~~~y~~~~v-~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m--------------------aq~G~~ 383 (742)
.++++|+++.|+. .+ ++||++.+| ++++|+||||||||||||+| |++.+- .+.-.|
T Consensus 265 ~l~~~~l~~~~~~-~l~~isl~i~~G-e~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~ 342 (510)
T PRK09700 265 VFEVRNVTSRDRK-KVRDISFSVCRG-EILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAY 342 (510)
T ss_pred EEEEeCccccCCC-cccceeEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcEE
Confidence 4678889987753 34 999999999 99999999999999999999 665320 111246
Q ss_pred ecCCC---C--CCchH------------------------------HHHHHHHcCCc-cccccccccchHHHH-HHHHHH
Q 004609 384 LPAKN---H--PRLPW------------------------------FDLILADIGDH-QSLEQNLSTFSGHIS-RIVDIL 426 (742)
Q Consensus 384 vPa~~---~--~~i~~------------------------------~d~il~~ig~~-~~~~~~lstfSgg~k-rl~~~~ 426 (742)
+|+.. . ..+++ ++.++..+|+. +..++++++|||||+ |+.+++
T Consensus 343 v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAr 422 (510)
T PRK09700 343 ITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISK 422 (510)
T ss_pred ccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHHH
Confidence 77651 0 00111 23456777886 678999999999999 899999
Q ss_pred HhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 427 ELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 427 ~l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
+++.+|.+|||||||+|||+.....+.. ++..+.+.|.++|++|||.+ +..+|++++.+.+|.+...
T Consensus 423 al~~~p~lLlLDEPt~~LD~~~~~~l~~-~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~ 490 (510)
T PRK09700 423 WLCCCPEVIIFDEPTRGIDVGAKAEIYK-VMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQI 490 (510)
T ss_pred HHhcCCCEEEECCCCCCcCHHHHHHHHH-HHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999998 55555666889999999987 6679999999999987643
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-22 Score=239.22 Aligned_cols=168 Identities=16% Similarity=0.125 Sum_probs=133.2
Q ss_pred cEEEeeeeeecCC-----------ce-e-cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh--------------
Q 004609 326 EMTVGSLSKGISD-----------FP-V-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------- 377 (742)
Q Consensus 326 ~l~~~nl~~~y~~-----------~~-v-~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m-------------- 377 (742)
.++++||++.|+. .. + ++||++.+| ++++|+||||||||||||+| |++.+-
T Consensus 313 ~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~G-e~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~ 391 (623)
T PRK10261 313 ILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPG-ETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTL 391 (623)
T ss_pred eEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCC-CEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcC
Confidence 6889999999961 23 3 999999999 99999999999999999999 665320
Q ss_pred --------hhhceeecCCCC----CCchH----------------------HHHHHHHcCCc-cccccccccchHHHH-H
Q 004609 378 --------SKAGLYLPAKNH----PRLPW----------------------FDLILADIGDH-QSLEQNLSTFSGHIS-R 421 (742)
Q Consensus 378 --------aq~G~~vPa~~~----~~i~~----------------------~d~il~~ig~~-~~~~~~lstfSgg~k-r 421 (742)
.+...|+|++.. ..+.+ +..++..+|+. ...++.+++|||||+ |
T Consensus 392 ~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQR 471 (623)
T PRK10261 392 SPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQR 471 (623)
T ss_pred CHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHH
Confidence 111347777641 11112 12346667775 567899999999999 9
Q ss_pred HHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 422 IVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 422 l~~~~~l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
++++++++.+|+||||||||+|||+.....+...+.+...+.|.++|++|||++ +..+|+++..+.+|.+...
T Consensus 472 v~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~iv~~ 545 (623)
T PRK10261 472 ICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEI 545 (623)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999999999999544433345889999999988 5678999999999988654
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.4e-23 Score=237.33 Aligned_cols=162 Identities=22% Similarity=0.270 Sum_probs=128.0
Q ss_pred cEEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh------hh--hceeecCCC-C--CC
Q 004609 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------SK--AGLYLPAKN-H--PR 391 (742)
Q Consensus 326 ~l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m------aq--~G~~vPa~~-~--~~ 391 (742)
.+.++||++.|+++.+ ++||++.+| ++++|+||||||||||||+| |++.+- .. ...|+|+.. . ..
T Consensus 324 ~l~~~~l~~~~~~~~~l~~isl~i~~G-e~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~q~~~~~~~~ 402 (556)
T PRK11819 324 VIEAENLSKSFGDRLLIDDLSFSLPPG-GIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQSRDALDPN 402 (556)
T ss_pred EEEEEeEEEEECCeeeecceeEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEeCchhhcCCC
Confidence 5789999999987665 999999999 99999999999999999999 665321 11 123667653 1 11
Q ss_pred chHHH-------------------HHHHHcCCcc-ccccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHH
Q 004609 392 LPWFD-------------------LILADIGDHQ-SLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGV 450 (742)
Q Consensus 392 i~~~d-------------------~il~~ig~~~-~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLDEp~~glDp~~~~ 450 (742)
+++++ .++..+|+.. ..++.+++|||||+ |+.++++++.+|+++||||||+|||+....
T Consensus 403 ~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~ 482 (556)
T PRK11819 403 KTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLR 482 (556)
T ss_pred CCHHHHHHhhcccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHH
Confidence 22222 3455667753 56889999999999 999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceec-ceEE
Q 004609 451 ALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFEN-AATE 492 (742)
Q Consensus 451 aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~-g~~~ 492 (742)
.|...+.+ + .+++|++|||.+ +..+|++++.+.+ |.+.
T Consensus 483 ~l~~~l~~-~---~~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~ 522 (556)
T PRK11819 483 ALEEALLE-F---PGCAVVISHDRWFLDRIATHILAFEGDSQVE 522 (556)
T ss_pred HHHHHHHh-C---CCeEEEEECCHHHHHHhCCEEEEEECCCeEE
Confidence 99985544 3 358999999987 5678999988886 5554
|
|
| >cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-22 Score=212.91 Aligned_cols=145 Identities=22% Similarity=0.204 Sum_probs=111.0
Q ss_pred cccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh-------hhhceeecCCCCC--CchH-----------------HH
Q 004609 344 DIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------SKAGLYLPAKNHP--RLPW-----------------FD 396 (742)
Q Consensus 344 ~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m-------aq~G~~vPa~~~~--~i~~-----------------~d 396 (742)
++++.+| ++++|+||||||||||||+| |++.+- .+...|+|+.... ..++ ..
T Consensus 19 ~~~i~~G-e~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~ 97 (246)
T cd03237 19 GGSISES-EVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKT 97 (246)
T ss_pred cCCcCCC-CEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHHHHH
Confidence 3456688 99999999999999999999 554331 1112355554311 1111 12
Q ss_pred HHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh
Q 004609 397 LILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD 475 (742)
Q Consensus 397 ~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~ 475 (742)
.++..+|+.+.+++.+++|||||+ |++++++++.+|+++||||||+|||+.....+...+.+...+.+.++|++||+.+
T Consensus 98 ~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~ 177 (246)
T cd03237 98 EIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDII 177 (246)
T ss_pred HHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 355667777778899999999999 8999999999999999999999999999999998555544455889999999987
Q ss_pred -hhhhcccccceecc
Q 004609 476 -LSCLKDKDTRFENA 489 (742)
Q Consensus 476 -l~~~a~~~~~i~~g 489 (742)
+..+|++++.+.+.
T Consensus 178 ~~~~~~d~i~~l~~~ 192 (246)
T cd03237 178 MIDYLADRLIVFEGE 192 (246)
T ss_pred HHHHhCCEEEEEcCC
Confidence 45689988877554
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.4e-22 Score=214.20 Aligned_cols=159 Identities=18% Similarity=0.275 Sum_probs=121.7
Q ss_pred cEEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhh-----h--------------------
Q 004609 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-----M-------------------- 377 (742)
Q Consensus 326 ~l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~-----m-------------------- 377 (742)
.+.++||++.|++..+ ++||++.+| ++++|+||||+|||||||+| |+..+ .
T Consensus 10 ~l~i~~v~~~~~~~~il~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 88 (264)
T PRK14243 10 VLRTENLNVYYGSFLAVKNVWLDIPKN-QITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVE 88 (264)
T ss_pred EEEEeeeEEEECCEEEeecceEEEcCC-CEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHH
Confidence 5789999999987655 999999999 99999999999999999999 65431 0
Q ss_pred -hhhceeecCCCCC-CchHHHHH--------------------HHHcCCc----cccccccccchHHHH-HHHHHHHhcC
Q 004609 378 -SKAGLYLPAKNHP-RLPWFDLI--------------------LADIGDH----QSLEQNLSTFSGHIS-RIVDILELVS 430 (742)
Q Consensus 378 -aq~G~~vPa~~~~-~i~~~d~i--------------------l~~ig~~----~~~~~~lstfSgg~k-rl~~~~~l~~ 430 (742)
.+...|+|+.... ..++++++ +..++.. +..++.+.+|||||+ |++++++++.
T Consensus 89 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~~ 168 (264)
T PRK14243 89 VRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAV 168 (264)
T ss_pred HhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHhc
Confidence 0112355554310 01222222 2233332 235678889999999 8999999999
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhccccccee
Q 004609 431 RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFE 487 (742)
Q Consensus 431 ~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~ 487 (742)
+|+++||||||+|||+.....+.. ++..+.+ +.++|++||+.+ +..+|++++.+.
T Consensus 169 ~p~lllLDEPt~~LD~~~~~~l~~-~L~~~~~-~~tvi~vtH~~~~~~~~~d~v~~l~ 224 (264)
T PRK14243 169 QPEVILMDEPCSALDPISTLRIEE-LMHELKE-QYTIIIVTHNMQQAARVSDMTAFFN 224 (264)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHH-HHHHHhc-CCEEEEEecCHHHHHHhCCEEEEEe
Confidence 999999999999999999999988 4445555 479999999987 678999998887
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-22 Score=210.52 Aligned_cols=152 Identities=14% Similarity=0.168 Sum_probs=118.5
Q ss_pred cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhh----h-----------------hhhceeecCCCC----CCchH-
Q 004609 342 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL----M-----------------SKAGLYLPAKNH----PRLPW- 394 (742)
Q Consensus 342 ~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~----m-----------------aq~G~~vPa~~~----~~i~~- 394 (742)
++||++.+| ++++|+||||+|||||||+| |++.+ - .+.-.|+|++.. ..++.
T Consensus 4 ~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t~~ 82 (230)
T TIGR02770 4 DLNLSLKRG-EVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFTMG 82 (230)
T ss_pred ceeEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccCHH
Confidence 678999999 99999999999999999999 76643 1 112235665531 11111
Q ss_pred --------------------HHHHHHHcCCc---cccccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHH
Q 004609 395 --------------------FDLILADIGDH---QSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGV 450 (742)
Q Consensus 395 --------------------~d~il~~ig~~---~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLDEp~~glDp~~~~ 450 (742)
+..++..+|+. +..++.+++|||||+ |++++++++.+|+++||||||+|+|+....
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~ 162 (230)
T TIGR02770 83 NHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQA 162 (230)
T ss_pred HHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHH
Confidence 12334555665 457889999999999 899999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 451 ALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 451 aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
.+...+.+...+.+.|+|++||+.+ +..+++++..+.+|.+..+
T Consensus 163 ~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~ 207 (230)
T TIGR02770 163 RVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVER 207 (230)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 9998555443335789999999987 5578999999999988654
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.7e-23 Score=235.54 Aligned_cols=168 Identities=16% Similarity=0.182 Sum_probs=131.1
Q ss_pred cEEEeeeeeecC-----------Ccee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhh------h---------
Q 004609 326 EMTVGSLSKGIS-----------DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLAS------L--------- 376 (742)
Q Consensus 326 ~l~~~nl~~~y~-----------~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~------~--------- 376 (742)
.++++|+++.|+ ++.+ ++||++.+| ++++|+||||||||||||+| |++. +
T Consensus 275 ~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~G-e~~~i~G~nGsGKSTLlk~l~Gl~~~~G~i~~~g~~i~~~~ 353 (529)
T PRK15134 275 LLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPG-ETLGLVGESGSGKSTTGLALLRLINSQGEIWFDGQPLHNLN 353 (529)
T ss_pred cccccCcEEEeecCccccccccccceeeecceeEEcCC-CEEEEECCCCCCHHHHHHHHhCcCCCCcEEEECCEEccccc
Confidence 356788999995 2344 999999999 99999999999999999999 6642 0
Q ss_pred ------hhhhceeecCCCC----CCchH-----------------------HHHHHHHcCCc-cccccccccchHHHH-H
Q 004609 377 ------MSKAGLYLPAKNH----PRLPW-----------------------FDLILADIGDH-QSLEQNLSTFSGHIS-R 421 (742)
Q Consensus 377 ------maq~G~~vPa~~~----~~i~~-----------------------~d~il~~ig~~-~~~~~~lstfSgg~k-r 421 (742)
+.+.-.|+|+... ..+++ +..++..+|+. ...++.+++|||||+ |
T Consensus 354 ~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qr 433 (529)
T PRK15134 354 RRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQR 433 (529)
T ss_pred hhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHH
Confidence 0111246776531 11111 12345667776 467899999999999 9
Q ss_pred HHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 422 IVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 422 l~~~~~l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
++++++++.+|+++||||||+|||+.....+...+.+...+.|.++|++|||.+ +..+|++++.+.+|.+..+
T Consensus 434 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~ 507 (529)
T PRK15134 434 IAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQ 507 (529)
T ss_pred HHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECCEEEEE
Confidence 999999999999999999999999999999999555433344889999999987 5678999999999988654
|
|
| >cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.88 E-value=1e-22 Score=198.25 Aligned_cols=144 Identities=22% Similarity=0.361 Sum_probs=111.1
Q ss_pred EeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhHHhhhhhhhhceeecCCCCCCchH-------HHHHH
Q 004609 329 VGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPW-------FDLIL 399 (742)
Q Consensus 329 ~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~lGli~~maq~G~~vPa~~~~~i~~-------~d~il 399 (742)
++|+++.|.+..+ ++|+++.+| ++++|+||||+||||||++| +|...|..|...+.. ...+.
T Consensus 2 ~~~~~~~~~~~~~l~~~~~~i~~g-~~~~i~G~nGsGKStll~~l--------~g~~~~~~G~i~~~~~~~~~~~~~~~~ 72 (157)
T cd00267 2 IENLSFRYGGRTALDNVSLTLKAG-EIVALVGPNGSGKSTLLRAI--------AGLLKPTSGEILIDGKDIAKLPLEELR 72 (157)
T ss_pred eEEEEEEeCCeeeEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHH--------hCCCCCCccEEEECCEEcccCCHHHHH
Confidence 5688899976555 999999999 99999999999999999999 777766665322211 01111
Q ss_pred HHcCCccccccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChhh-h
Q 004609 400 ADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL-S 477 (742)
Q Consensus 400 ~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~l-~ 477 (742)
..++. +..||+||+ |+.++++++.+|+++||||||+|+|+.....+...+.+ +.+.+.++|++||+.+. .
T Consensus 73 ~~i~~-------~~qlS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~-~~~~~~tii~~sh~~~~~~ 144 (157)
T cd00267 73 RRIGY-------VPQLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRE-LAEEGRTVIIVTHDPELAE 144 (157)
T ss_pred hceEE-------EeeCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHH-HHHCCCEEEEEeCCHHHHH
Confidence 11111 112999999 89999999999999999999999999999999985554 44447899999999884 5
Q ss_pred hhcccccceecc
Q 004609 478 CLKDKDTRFENA 489 (742)
Q Consensus 478 ~~a~~~~~i~~g 489 (742)
.++++...+.+|
T Consensus 145 ~~~d~i~~l~~g 156 (157)
T cd00267 145 LAADRVIVLKDG 156 (157)
T ss_pred HhCCEEEEEeCc
Confidence 567888777664
|
The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.7e-23 Score=201.44 Aligned_cols=167 Identities=17% Similarity=0.221 Sum_probs=131.5
Q ss_pred EEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhHHhh-hh-------------------hhh-----
Q 004609 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLA-SL-------------------MSK----- 379 (742)
Q Consensus 327 l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~lGli-~~-------------------maq----- 379 (742)
+.++||+|.|+++.| ++|+.+++| .+..|+||||+||||||.+++-+ .. +|+
T Consensus 2 I~i~nv~K~y~~~~vl~~isl~i~~g-~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSIL 80 (252)
T COG4604 2 ITIENVSKSYGTKVVLDDVSLDIPKG-GITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSIL 80 (252)
T ss_pred eeehhhhHhhCCEEeeccceeeecCC-ceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHHH
Confidence 568899999999887 999999999 99999999999999999998433 11 111
Q ss_pred -----------------hceeecCCCCC---CchHHHHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEEEEc
Q 004609 380 -----------------AGLYLPAKNHP---RLPWFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLID 438 (742)
Q Consensus 380 -----------------~G~~vPa~~~~---~i~~~d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLD 438 (742)
.|-|+-..|.. ....+++.+..+++++.-++.+.+|||||+ |.-.|+.++.+.+.+|||
T Consensus 81 kQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlLD 160 (252)
T COG4604 81 KQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLD 160 (252)
T ss_pred HhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcEEEec
Confidence 11111111100 011256678888899999999999999999 555558899999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChhhh-hhcccccceecceEEEe
Q 004609 439 EIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLS-CLKDKDTRFENAATEFS 494 (742)
Q Consensus 439 Ep~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~l~-~~a~~~~~i~~g~~~~~ 494 (742)
||.++||+.....++..+-....+.|.|+++|-||..++ .|+|.++.+.||.+...
T Consensus 161 EPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~ 217 (252)
T COG4604 161 EPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQ 217 (252)
T ss_pred CcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEec
Confidence 999999999999999944444456699999999999966 58999999999998654
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-22 Score=239.07 Aligned_cols=167 Identities=14% Similarity=0.177 Sum_probs=132.7
Q ss_pred CcEEEeeeeeecCC----cee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhh------h--------------
Q 004609 325 SEMTVGSLSKGISD----FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL------M-------------- 377 (742)
Q Consensus 325 ~~l~~~nl~~~y~~----~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~------m-------------- 377 (742)
..++++|+++.|++ ..+ ++||++.+| ++++|+||||||||||||+| |++.+ +
T Consensus 11 ~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~G-e~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~ 89 (623)
T PRK10261 11 DVLAVENLNIAFMQEQQKIAAVRNLSFSLQRG-ETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIE 89 (623)
T ss_pred ceEEEeceEEEecCCCCceeEEEeeEEEECCC-CEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccc
Confidence 36789999999963 233 999999999 99999999999999999999 66532 0
Q ss_pred -------------hhhceeecCCC----CCCchHH----------------------HHHHHHcCCc---cccccccccc
Q 004609 378 -------------SKAGLYLPAKN----HPRLPWF----------------------DLILADIGDH---QSLEQNLSTF 415 (742)
Q Consensus 378 -------------aq~G~~vPa~~----~~~i~~~----------------------d~il~~ig~~---~~~~~~lstf 415 (742)
.+...++|+.. ...+++. ..++..+|+. ..+++++++|
T Consensus 90 ~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~L 169 (623)
T PRK10261 90 LSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQL 169 (623)
T ss_pred cccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccC
Confidence 00124666653 1112222 2345566774 3478899999
Q ss_pred hHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEecChh-hhhhcccccceecceEE
Q 004609 416 SGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATE 492 (742)
Q Consensus 416 Sgg~k-rl~~~~~l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~-~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~ 492 (742)
||||+ |+.++++++.+|+||||||||+|||+.....+.+ ++..+.+ .|.++|++|||.+ +..+|++++.+.+|.+.
T Consensus 170 SgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~-ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~G~i~ 248 (623)
T PRK10261 170 SGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQ-LIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAV 248 (623)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHH-HHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeCCeec
Confidence 99999 9999999999999999999999999999999999 6666664 4889999999987 56899999999999886
Q ss_pred E
Q 004609 493 F 493 (742)
Q Consensus 493 ~ 493 (742)
.
T Consensus 249 ~ 249 (623)
T PRK10261 249 E 249 (623)
T ss_pred c
Confidence 4
|
|
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.8e-22 Score=211.85 Aligned_cols=169 Identities=17% Similarity=0.081 Sum_probs=124.6
Q ss_pred CCCcEEEeeeeeecCCcee-cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhhhh------hceeecCCCCC-Cch
Q 004609 323 ENSEMTVGSLSKGISDFPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMSK------AGLYLPAKNHP-RLP 393 (742)
Q Consensus 323 ~~~~l~~~nl~~~y~~~~v-~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~maq------~G~~vPa~~~~-~i~ 393 (742)
+...++++|+++. +...+ ++||++.+| ++++|+|||||||||||++| |++.+-.. ...|+|+.... ..+
T Consensus 36 ~~~~l~i~nls~~-~~~vL~~vs~~i~~G-e~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g~i~yv~q~~~l~~~t 113 (282)
T cd03291 36 DDNNLFFSNLCLV-GAPVLKNINLKIEKG-EMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISFSSQFSWIMPGT 113 (282)
T ss_pred CCCeEEEEEEEEe-cccceeeeeEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEEEEeCcccccccC
Confidence 3457899999986 32233 999999999 99999999999999999999 55433210 01245554310 012
Q ss_pred HHHHH--------------HHHcCCcc-----------ccccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHH
Q 004609 394 WFDLI--------------LADIGDHQ-----------SLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPS 447 (742)
Q Consensus 394 ~~d~i--------------l~~ig~~~-----------~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLDEp~~glDp~ 447 (742)
+++++ +..+++.. .+....+.||+||+ |+.++++++.+|+++||||||+|||+.
T Consensus 114 v~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~ 193 (282)
T cd03291 114 IKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVF 193 (282)
T ss_pred HHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHH
Confidence 22222 22223222 12234579999999 899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcccccceecceEEEe
Q 004609 448 EGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 448 ~~~aL~~all~~l~~~~~~vlitTH~~~l~~~a~~~~~i~~g~~~~~ 494 (742)
....+...++..+.+ +.++|++||+.+....|++++.+.+|.+.+.
T Consensus 194 ~~~~l~~~ll~~~~~-~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~ 239 (282)
T cd03291 194 TEKEIFESCVCKLMA-NKTRILVTSKMEHLKKADKILILHEGSSYFY 239 (282)
T ss_pred HHHHHHHHHHHHhhC-CCEEEEEeCChHHHHhCCEEEEEECCEEEEE
Confidence 999888766665554 6899999999886678999999999988654
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.9e-22 Score=193.79 Aligned_cols=166 Identities=22% Similarity=0.313 Sum_probs=131.2
Q ss_pred EEEeeeeeecCC----cee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhh-----------------------
Q 004609 327 MTVGSLSKGISD----FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL----------------------- 376 (742)
Q Consensus 327 l~~~nl~~~y~~----~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~----------------------- 376 (742)
++++++++..++ ..| ++++.+.+| +.++|+||+||||||||-.+ ||=.+
T Consensus 7 i~~~~l~ktvg~~~~~l~IL~~V~L~v~~G-e~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~ 85 (228)
T COG4181 7 IEVHHLSKTVGQGEGELSILKGVELVVKRG-ETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL 85 (228)
T ss_pred eehhhhhhhhcCCCcceeEeecceEEecCC-ceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHh
Confidence 444455554432 233 899999999 99999999999999999998 32211
Q ss_pred hhhhceeecCCCC----------CCch-------------HHHHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCC
Q 004609 377 MSKAGLYLPAKNH----------PRLP-------------WFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRE 432 (742)
Q Consensus 377 maq~G~~vPa~~~----------~~i~-------------~~d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~ 432 (742)
.+....||+++.. +.+| .-...+..+|+.+.+..++.+||||++ |++++++++..|
T Consensus 86 R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P 165 (228)
T COG4181 86 RARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRP 165 (228)
T ss_pred hccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCC
Confidence 1122234444320 1111 123468889999999999999999988 999999999999
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcccccceecceEEE
Q 004609 433 SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEF 493 (742)
Q Consensus 433 ~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~l~~~a~~~~~i~~g~~~~ 493 (742)
++++.||||.+||...+..+++.+...-++.|.|.+++|||..++..|++.+.+.+|.++-
T Consensus 166 ~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~r~~~G~l~~ 226 (228)
T COG4181 166 DVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLVE 226 (228)
T ss_pred CEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhheeeeecceecc
Confidence 9999999999999999999999777777788999999999999999999999999998753
|
|
| >cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.7e-22 Score=210.86 Aligned_cols=155 Identities=19% Similarity=0.228 Sum_probs=117.4
Q ss_pred eeeeeecCCce-e--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhhh-hh--------------c---------
Q 004609 330 GSLSKGISDFP-V--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS-KA--------------G--------- 381 (742)
Q Consensus 330 ~nl~~~y~~~~-v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~ma-q~--------------G--------- 381 (742)
.||+++|++.. + ++++ +.+| ++++|+||||||||||||+| |+..+-. +. |
T Consensus 4 ~~~~~~y~~~~~~l~~i~~-i~~G-e~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~ 81 (255)
T cd03236 4 DEPVHRYGPNSFKLHRLPV-PREG-QVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTK 81 (255)
T ss_pred cCcceeecCcchhhhcCCC-CCCC-CEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHH
Confidence 47889997643 3 8884 8899 99999999999999999999 4443210 00 0
Q ss_pred --------eeecCCCCCCch------------------HHHHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcE
Q 004609 382 --------LYLPAKNHPRLP------------------WFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESL 434 (742)
Q Consensus 382 --------~~vPa~~~~~i~------------------~~d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~L 434 (742)
.++|+.. ..++ .+..++..+|+.+..++.+.+||+||+ |+.++++++.+|++
T Consensus 82 ~~~~~~~i~~~~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~i 160 (255)
T cd03236 82 LLEGDVKVIVKPQYV-DLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADF 160 (255)
T ss_pred hhhcccceeeecchh-ccCchHHHHHHHHHhchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCCCE
Confidence 1112211 0000 123456677887788899999999999 89999999999999
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChhh-hhhcccccceec
Q 004609 435 VLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL-SCLKDKDTRFEN 488 (742)
Q Consensus 435 lLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~l-~~~a~~~~~i~~ 488 (742)
+||||||+|+|+.....+.. ++..+.+.+.++|++||+.+. ..+|+++..+.+
T Consensus 161 lllDEPts~LD~~~~~~l~~-~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l~~ 214 (255)
T cd03236 161 YFFDEPSSYLDIKQRLNAAR-LIRELAEDDNYVLVVEHDLAVLDYLSDYIHCLYG 214 (255)
T ss_pred EEEECCCCCCCHHHHHHHHH-HHHHHHhcCCEEEEEECCHHHHHHhCCEEEEECC
Confidence 99999999999999999988 555666668899999999884 558988877643
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.3e-22 Score=215.98 Aligned_cols=167 Identities=18% Similarity=0.247 Sum_probs=129.8
Q ss_pred CcEEEeeeeeecCC--cee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhh-----------------------
Q 004609 325 SEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL----------------------- 376 (742)
Q Consensus 325 ~~l~~~nl~~~y~~--~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~----------------------- 376 (742)
+.+.++|+++.|.+ ..+ ++||+|.+| ++++|+|||||||||||++| |+..+
T Consensus 79 ~~i~~~nls~~y~~~~~~~L~~is~~I~~G-e~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~ 157 (329)
T PRK14257 79 NVFEIRNFNFWYMNRTKHVLHDLNLDIKRN-KVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKIS 157 (329)
T ss_pred ceEEEEeeEEEecCCCceeeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 58899999999953 344 999999999 99999999999999999999 66521
Q ss_pred ---hhhhceeecCCCCC-CchHHHHH----------------------HHHcCC----ccccccccccchHHHH-HHHHH
Q 004609 377 ---MSKAGLYLPAKNHP-RLPWFDLI----------------------LADIGD----HQSLEQNLSTFSGHIS-RIVDI 425 (742)
Q Consensus 377 ---maq~G~~vPa~~~~-~i~~~d~i----------------------l~~ig~----~~~~~~~lstfSgg~k-rl~~~ 425 (742)
+.+.-.|+|+.... ..++.+++ +..+++ ...++++.++|||||+ |++++
T Consensus 158 ~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LA 237 (329)
T PRK14257 158 SLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIA 237 (329)
T ss_pred hHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHH
Confidence 11223466766421 11222222 233333 2346788999999999 99999
Q ss_pred HHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 426 LELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 426 ~~l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
++++.+|++|||||||+|+|+.....+... +..+.+ ++|+|++||+++ +..+|++++.+.+|.+...
T Consensus 238 RAl~~~p~IlLLDEPts~LD~~~~~~i~~~-i~~l~~-~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~ 305 (329)
T PRK14257 238 RAIALEPEVLLMDEPTSALDPIATAKIEEL-ILELKK-KYSIIIVTHSMAQAQRISDETVFFYQGWIEEA 305 (329)
T ss_pred HHHHhCCCEEEEeCCcccCCHHHHHHHHHH-HHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999998884 455555 589999999988 4668999999999988654
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.1e-22 Score=230.71 Aligned_cols=166 Identities=12% Similarity=0.150 Sum_probs=128.1
Q ss_pred cEEEeeeeeecCCcee-cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh--------------------hhhcee
Q 004609 326 EMTVGSLSKGISDFPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------SKAGLY 383 (742)
Q Consensus 326 ~l~~~nl~~~y~~~~v-~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m--------------------aq~G~~ 383 (742)
.++++|+++.|. ..+ ++||++.+| ++++|+||||||||||||+| |+..+- .+...|
T Consensus 250 ~i~~~~l~~~~~-~~l~~vsl~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~ 327 (491)
T PRK10982 250 ILEVRNLTSLRQ-PSIRDVSFDLHKG-EILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFAL 327 (491)
T ss_pred EEEEeCcccccC-cccceeeEEEeCC-cEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCEE
Confidence 456777777642 233 999999999 99999999999999999999 665320 111235
Q ss_pred ecCCCC-----CCchH---------------------------HHHHHHHcCCc-cccccccccchHHHH-HHHHHHHhc
Q 004609 384 LPAKNH-----PRLPW---------------------------FDLILADIGDH-QSLEQNLSTFSGHIS-RIVDILELV 429 (742)
Q Consensus 384 vPa~~~-----~~i~~---------------------------~d~il~~ig~~-~~~~~~lstfSgg~k-rl~~~~~l~ 429 (742)
+|+... ..+++ +..++..+++. +..++++++|||||+ |+.++++++
T Consensus 328 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~ 407 (491)
T PRK10982 328 VTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLL 407 (491)
T ss_pred cCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHHh
Confidence 555420 00111 12344556664 457899999999999 899999999
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 430 SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 430 ~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
.+|++|||||||+|+|+.....+.. ++..+.+.|.|+|++|||.+ +..+|++.+.+.+|.+...
T Consensus 408 ~~p~illLDEPt~gLD~~~~~~~~~-~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~ 472 (491)
T PRK10982 408 TQPEILMLDEPTRGIDVGAKFEIYQ-LIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGI 472 (491)
T ss_pred cCCCEEEEcCCCcccChhHHHHHHH-HHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEEE
Confidence 9999999999999999999999998 55566767899999999987 6679999999999988643
|
|
| >cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.4e-22 Score=198.79 Aligned_cols=128 Identities=34% Similarity=0.464 Sum_probs=106.4
Q ss_pred ecccccccCCceEEEEEeCCCCCcchHHhhHHhhhhhhh----------hceeecCCCCCCchHHHHHHHHcCCcccccc
Q 004609 341 VPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSK----------AGLYLPAKNHPRLPWFDLILADIGDHQSLEQ 410 (742)
Q Consensus 341 v~i~l~l~~g~~~~~ItGpNGsGKSTlLK~lGli~~maq----------~G~~vPa~~~~~i~~~d~il~~ig~~~~~~~ 410 (742)
+++++.+.++ .+.+|||||||||||+|++++++..+++ .|+++|+.. ..+ ++..++
T Consensus 12 ~~~~i~~~~~-~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~-----i~~~~~------- 77 (162)
T cd03227 12 VPNDVTFGEG-SLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCIVAAVS-AEL-----IFTRLQ------- 77 (162)
T ss_pred eccEEecCCC-CEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccCcccCCCcceeeE-EEE-----ehheee-------
Confidence 4677777776 7999999999999999999999999998 888888765 333 333332
Q ss_pred ccccchHHHH-HHHHHHHhcC----CCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcccccc
Q 004609 411 NLSTFSGHIS-RIVDILELVS----RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTR 485 (742)
Q Consensus 411 ~lstfSgg~k-rl~~~~~l~~----~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~l~~~a~~~~~ 485 (742)
+|+||+ ++.++++++. +|+++|||||++||||.++..+..++.+++.+ ++++|++||+.++...+++...
T Consensus 78 ----lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~-~~~vii~TH~~~~~~~~d~~~~ 152 (162)
T cd03227 78 ----LSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVK-GAQVIVITHLPELAELADKLIH 152 (162)
T ss_pred ----ccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEcCCHHHHHhhhhEEE
Confidence 899998 6777766654 88999999999999999999999988888777 8899999999998888877665
Q ss_pred ee
Q 004609 486 FE 487 (742)
Q Consensus 486 i~ 487 (742)
+.
T Consensus 153 l~ 154 (162)
T cd03227 153 IK 154 (162)
T ss_pred EE
Confidence 54
|
These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.9e-22 Score=229.07 Aligned_cols=163 Identities=17% Similarity=0.145 Sum_probs=126.4
Q ss_pred EEEeeeeeecCCcee-cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh-------h-------------hhceee
Q 004609 327 MTVGSLSKGISDFPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------S-------------KAGLYL 384 (742)
Q Consensus 327 l~~~nl~~~y~~~~v-~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m-------a-------------q~G~~v 384 (742)
+.++|+++. ..+ ++||++.+| ++++|+||||||||||||+| |++.+. . +...|+
T Consensus 258 l~~~~~~~~---~~l~~isl~i~~G-e~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~ 333 (501)
T PRK11288 258 LRLDGLKGP---GLREPISFSVRAG-EIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLC 333 (501)
T ss_pred EEEeccccC---CcccceeEEEeCC-cEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEc
Confidence 455566532 233 999999999 99999999999999999999 665321 0 112355
Q ss_pred cCCC-----CCCchH---------------------------HHHHHHHcCC-ccccccccccchHHHH-HHHHHHHhcC
Q 004609 385 PAKN-----HPRLPW---------------------------FDLILADIGD-HQSLEQNLSTFSGHIS-RIVDILELVS 430 (742)
Q Consensus 385 Pa~~-----~~~i~~---------------------------~d~il~~ig~-~~~~~~~lstfSgg~k-rl~~~~~l~~ 430 (742)
|+.. ...++. ...++..+|+ .+..++++.+|||||+ |+.++++++.
T Consensus 334 ~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~ 413 (501)
T PRK11288 334 PEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSE 413 (501)
T ss_pred CcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHcc
Confidence 6542 000111 2235566777 3678999999999999 9999999999
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 431 RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 431 ~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
+|+||||||||+|||+.....+.. ++..+.+.|.++|++|||.+ +..+|++.+.+.+|.+.+.
T Consensus 414 ~p~lllLDEPt~~LD~~~~~~l~~-~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~ 477 (501)
T PRK11288 414 DMKVILLDEPTRGIDVGAKHEIYN-VIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGE 477 (501)
T ss_pred CCCEEEEcCCCCCCCHhHHHHHHH-HHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEEE
Confidence 999999999999999999999998 55556777899999999987 6679999999999987654
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.9e-22 Score=254.30 Aligned_cols=169 Identities=21% Similarity=0.241 Sum_probs=138.0
Q ss_pred CCcEEEeeeeeecCC--cee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhh------------------hhhh
Q 004609 324 NSEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL------------------MSKA 380 (742)
Q Consensus 324 ~~~l~~~nl~~~y~~--~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~------------------maq~ 380 (742)
...+.++||+|.|++ +.+ ++||.+.+| ++++|+||||||||||||+| |++.+ ..+.
T Consensus 1935 ~~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~G-Ei~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~ 2013 (2272)
T TIGR01257 1935 TDILRLNELTKVYSGTSSPAVDRLCVGVRPG-ECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQN 2013 (2272)
T ss_pred CceEEEEEEEEEECCCCceEEEeeEEEEcCC-cEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhh
Confidence 357899999999985 334 999999999 99999999999999999999 66532 0122
Q ss_pred ceeecCCCCC--CchH---------------------HHHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEEE
Q 004609 381 GLYLPAKNHP--RLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVL 436 (742)
Q Consensus 381 G~~vPa~~~~--~i~~---------------------~d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlL 436 (742)
.+|+|+.... .++. ++.++..+|+.+..++.+++|||||+ |+.+|++++.+|++||
T Consensus 2014 IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLL 2093 (2272)
T TIGR01257 2014 MGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVL 2093 (2272)
T ss_pred EEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 3467775411 1111 22346677888888999999999999 8999999999999999
Q ss_pred EcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 437 IDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 437 LDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
|||||+|+||..+..+.+ ++..+.+.|.++|+|||+++ ...+|+++..+.+|.+...
T Consensus 2094 LDEPTsGLDp~sr~~l~~-lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~ 2151 (2272)
T TIGR01257 2094 LDEPTTGMDPQARRMLWN-TIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCL 2151 (2272)
T ss_pred EECCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 999999999999999998 55556666889999999987 6679999999999988765
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.8e-22 Score=236.53 Aligned_cols=164 Identities=19% Similarity=0.153 Sum_probs=122.2
Q ss_pred cEEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhh-hhhhhc--eeecCCC-CCCchH----
Q 004609 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLAS-LMSKAG--LYLPAKN-HPRLPW---- 394 (742)
Q Consensus 326 ~l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~-~maq~G--~~vPa~~-~~~i~~---- 394 (742)
.|.++|+++.|+++.+ ++||+|.+| ++++|+||||||||||||+| |... -....| .|+++.. ...++.
T Consensus 177 ~I~i~nls~~y~~~~ll~~isl~i~~G-e~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~~v 255 (718)
T PLN03073 177 DIHMENFSISVGGRDLIVDASVTLAFG-RHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQCV 255 (718)
T ss_pred eEEEceEEEEeCCCEEEECCEEEECCC-CEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHHHH
Confidence 5889999999987666 999999999 99999999999999999999 4210 000000 1222210 000000
Q ss_pred --------------------------------------------------------------------HHHHHHHcCCc-
Q 004609 395 --------------------------------------------------------------------FDLILADIGDH- 405 (742)
Q Consensus 395 --------------------------------------------------------------------~d~il~~ig~~- 405 (742)
...++..+|+.
T Consensus 256 ~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl~~ 335 (718)
T PLN03073 256 LNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSFTP 335 (718)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCCCh
Confidence 01123333442
Q ss_pred cccccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccc
Q 004609 406 QSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKD 483 (742)
Q Consensus 406 ~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~ 483 (742)
...++++++|||||+ |+.++++++.+|++|||||||+|||+.....|...+.+ .+.++|++|||.+ +..+|+++
T Consensus 336 ~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~----~~~tviivsHd~~~l~~~~d~i 411 (718)
T PLN03073 336 EMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLK----WPKTFIVVSHAREFLNTVVTDI 411 (718)
T ss_pred HHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHH----cCCEEEEEECCHHHHHHhCCEE
Confidence 345788999999999 99999999999999999999999999998888774433 3789999999987 56789999
Q ss_pred cceecceEEEe
Q 004609 484 TRFENAATEFS 494 (742)
Q Consensus 484 ~~i~~g~~~~~ 494 (742)
+.+.+|.+..+
T Consensus 412 ~~l~~g~i~~~ 422 (718)
T PLN03073 412 LHLHGQKLVTY 422 (718)
T ss_pred EEEECCEEEEe
Confidence 99999988644
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.7e-22 Score=208.20 Aligned_cols=166 Identities=16% Similarity=0.173 Sum_probs=126.3
Q ss_pred cEEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhh--------------------------
Q 004609 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------------- 376 (742)
Q Consensus 326 ~l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~-------------------------- 376 (742)
.+.++++++.|++..+ ++||++.+| ++++|+||||+|||||||+| |++.+
T Consensus 8 ~~~~~~~~~~~~~~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~ 86 (261)
T PRK14263 8 VMDCKLDKIFYGNFMAVRDSHVPIRKN-EITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVV 86 (261)
T ss_pred eEEEEeEEEEeCCEEEEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHh
Confidence 4667889999987655 999999999 99999999999999999999 66532
Q ss_pred hhhhceeecCCCCC-CchHHHH--------------------HHHHcCCcc----ccccccccchHHHH-HHHHHHHhcC
Q 004609 377 MSKAGLYLPAKNHP-RLPWFDL--------------------ILADIGDHQ----SLEQNLSTFSGHIS-RIVDILELVS 430 (742)
Q Consensus 377 maq~G~~vPa~~~~-~i~~~d~--------------------il~~ig~~~----~~~~~lstfSgg~k-rl~~~~~l~~ 430 (742)
..+...|+|+.... .+..+++ ++..+++.. ..++..+.||+||+ |++++++++.
T Consensus 87 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~ 166 (261)
T PRK14263 87 VRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIAT 166 (261)
T ss_pred hhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHc
Confidence 01113456655321 1222222 333444432 33567789999999 8999999999
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhccccccee--------cceEEEe
Q 004609 431 RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFE--------NAATEFS 494 (742)
Q Consensus 431 ~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~--------~g~~~~~ 494 (742)
+|+++||||||+|||+.....+...+. .+.+ +.++|++||+.+ +..+|+++..+. +|.+...
T Consensus 167 ~p~llllDEPtsgLD~~~~~~l~~~l~-~~~~-~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~ 237 (261)
T PRK14263 167 EPEVLLLDEPCSALDPIATRRVEELMV-ELKK-DYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEM 237 (261)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHH-HHhc-CCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEe
Confidence 999999999999999999999998554 4554 689999999987 668999998885 6776543
|
|
| >PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.2e-22 Score=203.33 Aligned_cols=148 Identities=16% Similarity=0.127 Sum_probs=111.2
Q ss_pred cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhhhhhcee-------ecCC--C--CCCchHHHHH-----------
Q 004609 342 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMSKAGLY-------LPAK--N--HPRLPWFDLI----------- 398 (742)
Q Consensus 342 ~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~maq~G~~-------vPa~--~--~~~i~~~d~i----------- 398 (742)
++||++++| ++++|+||||||||||||+| |++.+- .|.. ++.. . ...+++.+++
T Consensus 5 ~vs~~i~~G-e~~~l~G~NGsGKSTLlk~i~Gl~~~~--sG~i~~~~~~~~~~~~~~~l~~~ltv~enl~~~~~~~~~~~ 81 (213)
T PRK15177 5 KTDFVMGYH-EHIGILAAPGSGKTTLTRLLCGLDAPD--EGDFIGLRGDALPLGANSFILPGLTGEENARMMASLYGLDG 81 (213)
T ss_pred eeeEEEcCC-CEEEEECCCCCCHHHHHHHHhCCccCC--CCCEEEecCceeccccccccCCcCcHHHHHHHHHHHcCCCH
Confidence 789999999 99999999999999999999 443221 1111 0000 0 0112222222
Q ss_pred -------HHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEE
Q 004609 399 -------LADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVT 470 (742)
Q Consensus 399 -------l~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlit 470 (742)
+..+++....++.++.||+||+ |++++++++.+|+++|||||++++|+.....+...+.+.+.+ .++|++
T Consensus 82 ~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~~--~~ii~v 159 (213)
T PRK15177 82 DEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQQ--KGLIVL 159 (213)
T ss_pred HHHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhhC--CcEEEE
Confidence 1223344456778999999999 899999999999999999999999999999988866666543 468999
Q ss_pred ecChh-hhhhcccccceecceEEEe
Q 004609 471 THYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 471 TH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
||++. +..+|++...+.+|.+.+.
T Consensus 160 sH~~~~~~~~~d~i~~l~~G~i~~~ 184 (213)
T PRK15177 160 THNPRLIKEHCHAFGVLLHGKITMC 184 (213)
T ss_pred ECCHHHHHHhcCeeEEEECCeEEEe
Confidence 99987 4579999999999998765
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.9e-22 Score=229.54 Aligned_cols=163 Identities=18% Similarity=0.252 Sum_probs=128.2
Q ss_pred cEEEeeeeeecCCcee-cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhh------h--------------hhhcee
Q 004609 326 EMTVGSLSKGISDFPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL------M--------------SKAGLY 383 (742)
Q Consensus 326 ~l~~~nl~~~y~~~~v-~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~------m--------------aq~G~~ 383 (742)
.+.++|+++. .+ ++||++.+| ++++|+||||||||||||+| |++.+ + .....|
T Consensus 268 ~l~~~~l~~~----~l~~isl~i~~G-e~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~ 342 (510)
T PRK15439 268 VLTVEDLTGE----GFRNISLEVRAG-EILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVY 342 (510)
T ss_pred eEEEeCCCCC----CccceeEEEcCC-cEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEE
Confidence 4667777742 24 899999999 99999999999999999999 66532 0 011346
Q ss_pred ecCCC-----CCCchH------------------------HHHHHHHcCCc-cccccccccchHHHH-HHHHHHHhcCCC
Q 004609 384 LPAKN-----HPRLPW------------------------FDLILADIGDH-QSLEQNLSTFSGHIS-RIVDILELVSRE 432 (742)
Q Consensus 384 vPa~~-----~~~i~~------------------------~d~il~~ig~~-~~~~~~lstfSgg~k-rl~~~~~l~~~~ 432 (742)
+|+.. ...+++ ++.++..+|+. ...++++++|||||+ |+.++++++.+|
T Consensus 343 v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p 422 (510)
T PRK15439 343 LPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASP 422 (510)
T ss_pred CCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCC
Confidence 77641 001111 22456667876 678899999999999 899999999999
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 433 SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 433 ~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
+||||||||+|||+.....+.. ++..+.+.|.++|++|||.+ +..+|++++.+.+|.+...
T Consensus 423 ~lLlLDEPt~gLD~~~~~~l~~-~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~ 484 (510)
T PRK15439 423 QLLIVDEPTRGVDVSARNDIYQ-LIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGA 484 (510)
T ss_pred CEEEECCCCcCcChhHHHHHHH-HHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999 55556666899999999987 5679999999999988643
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.3e-21 Score=218.75 Aligned_cols=159 Identities=19% Similarity=0.244 Sum_probs=135.6
Q ss_pred cEEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhHHhhhhhhhhceeecCCCC--------------
Q 004609 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNH-------------- 389 (742)
Q Consensus 326 ~l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~lGli~~maq~G~~vPa~~~-------------- 389 (742)
.++++|++|+||+..+ ++||++.+| ++++|+|.||+|||||+|+| +|.|.|.+|.
T Consensus 8 ll~~~~i~K~FggV~AL~~v~l~v~~G-EV~aL~GeNGAGKSTLmKiL--------sGv~~p~~G~I~~~G~~~~~~sp~ 78 (500)
T COG1129 8 LLELRGISKSFGGVKALDGVSLTVRPG-EVHALLGENGAGKSTLMKIL--------SGVYPPDSGEILIDGKPVAFSSPR 78 (500)
T ss_pred eeeeecceEEcCCceeeccceeEEeCc-eEEEEecCCCCCHHHHHHHH--------hCcccCCCceEEECCEEccCCCHH
Confidence 4678999999998665 999999999 99999999999999999999 7877777762
Q ss_pred -----------------CCchHHH-------------------------HHHHHcCCccccccccccchHHHHH-HHHHH
Q 004609 390 -----------------PRLPWFD-------------------------LILADIGDHQSLEQNLSTFSGHISR-IVDIL 426 (742)
Q Consensus 390 -----------------~~i~~~d-------------------------~il~~ig~~~~~~~~lstfSgg~kr-l~~~~ 426 (742)
..+++.+ .++..+|.....+..+++||.+++| +.+++
T Consensus 79 ~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIAr 158 (500)
T COG1129 79 DALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIAR 158 (500)
T ss_pred HHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHH
Confidence 1111222 3466677755588999999999996 55669
Q ss_pred HhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 427 ELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 427 ~l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
++..++.+|||||||+.|+..+...|.. +++.|+++|.++|++||.++ +..+||++..+.+|....+
T Consensus 159 Al~~~arllIlDEPTaaLt~~E~~~Lf~-~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~ 226 (500)
T COG1129 159 ALSFDARVLILDEPTAALTVKETERLFD-LIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGT 226 (500)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeee
Confidence 9999999999999999999999999998 88889999999999999976 8899999999999987543
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.9e-22 Score=227.57 Aligned_cols=162 Identities=15% Similarity=0.196 Sum_probs=127.0
Q ss_pred EEEeeeeeecCCcee-cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh--------------------hhhceee
Q 004609 327 MTVGSLSKGISDFPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------SKAGLYL 384 (742)
Q Consensus 327 l~~~nl~~~y~~~~v-~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m--------------------aq~G~~v 384 (742)
++++|+++. .+ ++||++.+| ++++|+||||||||||||+| |++.+- .+.-.|+
T Consensus 258 l~~~~l~~~----~l~~vsl~i~~G-e~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v 332 (501)
T PRK10762 258 LKVDNLSGP----GVNDVSFTLRKG-EILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYI 332 (501)
T ss_pred EEEeCcccC----CcccceEEEcCC-cEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEe
Confidence 455666642 24 899999999 99999999999999999999 665320 1113467
Q ss_pred cCCCC-----CCchH---------------------------HHHHHHHcCCc-cccccccccchHHHH-HHHHHHHhcC
Q 004609 385 PAKNH-----PRLPW---------------------------FDLILADIGDH-QSLEQNLSTFSGHIS-RIVDILELVS 430 (742)
Q Consensus 385 Pa~~~-----~~i~~---------------------------~d~il~~ig~~-~~~~~~lstfSgg~k-rl~~~~~l~~ 430 (742)
|+... ..+++ ++.++..+|+. ...++++.+|||||+ |+.++++++.
T Consensus 333 ~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~ 412 (501)
T PRK10762 333 SEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMT 412 (501)
T ss_pred cCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhh
Confidence 77631 00111 22456667774 568899999999999 9999999999
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 431 RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 431 ~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
+|++|||||||+|||+.....+... +..+.+.|.++|++|||.+ +..+|++++.+.+|.+...
T Consensus 413 ~p~lllLDEPt~~LD~~~~~~l~~~-l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~ 476 (501)
T PRK10762 413 RPKVLILDEPTRGVDVGAKKEIYQL-INQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISGE 476 (501)
T ss_pred CCCEEEEcCCCCCCCHhHHHHHHHH-HHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEE
Confidence 9999999999999999999999994 4455666889999999987 6679999999999988654
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.6e-22 Score=221.09 Aligned_cols=168 Identities=17% Similarity=0.167 Sum_probs=135.8
Q ss_pred cEEEeeeeeecCCc-----ee-cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh---------------------
Q 004609 326 EMTVGSLSKGISDF-----PV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------- 377 (742)
Q Consensus 326 ~l~~~nl~~~y~~~-----~v-~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m--------------------- 377 (742)
.++++||++.|... .+ ++||++.+| ++++|+|.+||||||+.++| |++..-
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~G-E~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~ 83 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPG-EILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSER 83 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCC-cEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHH
Confidence 57899999998532 33 999999999 99999999999999999999 666431
Q ss_pred ------hhhceeecCCCCCCch----H----------------------HHHHHHHcCCcccccc--ccccchHHHH-HH
Q 004609 378 ------SKAGLYLPAKNHPRLP----W----------------------FDLILADIGDHQSLEQ--NLSTFSGHIS-RI 422 (742)
Q Consensus 378 ------aq~G~~vPa~~~~~i~----~----------------------~d~il~~ig~~~~~~~--~lstfSgg~k-rl 422 (742)
.....++||+....+. + ..++|..+|+.+.... ++..|||||+ |+
T Consensus 84 ~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv 163 (539)
T COG1123 84 EMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRV 163 (539)
T ss_pred HHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHH
Confidence 1223466666532221 1 1235777787766655 9999999999 89
Q ss_pred HHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 423 VDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 423 ~~~~~l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
.+|++++.+|+|||+||||++||+.....|.+++.+...+.|.++|++|||+. +..+||++.++.+|.+.-.
T Consensus 164 ~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~ 236 (539)
T COG1123 164 MIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVET 236 (539)
T ss_pred HHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEe
Confidence 99999999999999999999999999999999666655677999999999999 6679999999999988643
|
|
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-21 Score=227.64 Aligned_cols=169 Identities=17% Similarity=0.169 Sum_probs=128.1
Q ss_pred CcEEEeeeeeecCC-cee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhh-------------------hhhhc
Q 004609 325 SEMTVGSLSKGISD-FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKAG 381 (742)
Q Consensus 325 ~~l~~~nl~~~y~~-~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~-------------------maq~G 381 (742)
+.++++|++|+|++ .++ ++||++++| +.++|+||||||||||+|++ |+..+ +.+..
T Consensus 321 ~~i~~~~v~f~y~~~~~~l~~i~~~i~~G-~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 399 (547)
T PRK10522 321 QTLELRNVTFAYQDNGFSVGPINLTIKRG-ELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLF 399 (547)
T ss_pred ceEEEEEEEEEeCCCCeEEecceEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhhe
Confidence 46899999999964 434 999999999 99999999999999999999 33321 11112
Q ss_pred eeecCCCCC---C---------chHHHHHHHHcCCccccccc-----cccchHHHH-HHHHHHHhcCCCcEEEEcCCCCC
Q 004609 382 LYLPAKNHP---R---------LPWFDLILADIGDHQSLEQN-----LSTFSGHIS-RIVDILELVSRESLVLIDEIGSG 443 (742)
Q Consensus 382 ~~vPa~~~~---~---------i~~~d~il~~ig~~~~~~~~-----lstfSgg~k-rl~~~~~l~~~~~LlLLDEp~~g 443 (742)
.++|++... . -..+...+..++....+..+ -..|||||+ |++++++++.+|+++||||||+|
T Consensus 400 ~~v~q~~~lf~~ti~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~ 479 (547)
T PRK10522 400 SAVFTDFHLFDQLLGPEGKPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAAD 479 (547)
T ss_pred EEEecChhHHHHhhccccCchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCC
Confidence 244443210 0 00122234455555443321 358999999 99999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcccccceecceEEEe
Q 004609 444 TDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 444 lDp~~~~aL~~all~~l~~~~~~vlitTH~~~l~~~a~~~~~i~~g~~~~~ 494 (742)
+|+.....+.+.+.+.+...+.|+|++||+.+....+|++..+++|++.-.
T Consensus 480 LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~e~ 530 (547)
T PRK10522 480 QDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSEL 530 (547)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEEEECCEEEEe
Confidence 999999999887776655557899999999988889999999999987643
|
|
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.7e-22 Score=191.65 Aligned_cols=166 Identities=20% Similarity=0.273 Sum_probs=135.5
Q ss_pred cEEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhHHhhhh----------------hhhhceeecCC
Q 004609 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASL----------------MSKAGLYLPAK 387 (742)
Q Consensus 326 ~l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~lGli~~----------------maq~G~~vPa~ 387 (742)
.+.++|+.|.||...| .+|+.-..| +++.|+|.+||||||||+||.++-. ....|-.+|++
T Consensus 6 ~l~v~dlHK~~G~~eVLKGvSL~A~~G-dVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad 84 (256)
T COG4598 6 ALEVEDLHKRYGEHEVLKGVSLQANAG-DVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPAD 84 (256)
T ss_pred ceehhHHHhhcccchhhcceeeecCCC-CEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCC
Confidence 5778999999998777 999999999 9999999999999999999954421 12334444444
Q ss_pred CC-------------------CCchHHH----------------------HHHHHcCCccccccccccchHHHH-HHHHH
Q 004609 388 NH-------------------PRLPWFD----------------------LILADIGDHQSLEQNLSTFSGHIS-RIVDI 425 (742)
Q Consensus 388 ~~-------------------~~i~~~d----------------------~il~~ig~~~~~~~~lstfSgg~k-rl~~~ 425 (742)
.. +.+++++ .++..+|+.+..+.++..||||++ |++++
T Consensus 85 ~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIA 164 (256)
T COG4598 85 KRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIA 164 (256)
T ss_pred HHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHH
Confidence 30 1112222 347788999999999999999998 99999
Q ss_pred HHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChhhhh-hcccccceecceEEE
Q 004609 426 LELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSC-LKDKDTRFENAATEF 493 (742)
Q Consensus 426 ~~l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~l~~-~a~~~~~i~~g~~~~ 493 (742)
++++.+|.++|+||||+.|||.-...+.. ++..|++.|.|.+++||.+.+++ .+.+...+.+|.++-
T Consensus 165 RaLameP~vmLFDEPTSALDPElVgEVLk-v~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iEE 232 (256)
T COG4598 165 RALAMEPEVMLFDEPTSALDPELVGEVLK-VMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEE 232 (256)
T ss_pred HHHhcCCceEeecCCcccCCHHHHHHHHH-HHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceecc
Confidence 99999999999999999999999888887 88889999999999999998764 677777788887753
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.1e-22 Score=250.27 Aligned_cols=167 Identities=23% Similarity=0.308 Sum_probs=136.2
Q ss_pred CcEEEeeeeeecC--Ccee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh------------------hhhc
Q 004609 325 SEMTVGSLSKGIS--DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------SKAG 381 (742)
Q Consensus 325 ~~l~~~nl~~~y~--~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m------------------aq~G 381 (742)
..++++||+|.|+ ++.+ ++|+++.+| ++++|+||||||||||||+| |++.+- .+..
T Consensus 927 ~~L~I~nLsK~y~~~~k~aL~~lsl~I~~G-ei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~I 1005 (2272)
T TIGR01257 927 PGVCVKNLVKIFEPSGRPAVDRLNITFYEN-QITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSL 1005 (2272)
T ss_pred ceEEEEeEEEEecCCCceEEEeeEEEEcCC-cEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcE
Confidence 4789999999995 3444 999999999 99999999999999999999 665320 1223
Q ss_pred eeecCCCC--CCchH---------------------HHHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEEEE
Q 004609 382 LYLPAKNH--PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLI 437 (742)
Q Consensus 382 ~~vPa~~~--~~i~~---------------------~d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLL 437 (742)
.++|+... ..+++ ++.++..+|+.+..++.+++|||||+ |++++++++.+|++|||
T Consensus 1006 G~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLL 1085 (2272)
T TIGR01257 1006 GMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVL 1085 (2272)
T ss_pred EEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 46676541 11111 23457778888888999999999999 89999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 438 DEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 438 DEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
||||+|+||..+..+.+ ++..++ .|.++|+|||+++ ...+||++..+.+|.+...
T Consensus 1086 DEPTSGLDp~sr~~l~~-lL~~l~-~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~ 1141 (2272)
T TIGR01257 1086 DEPTSGVDPYSRRSIWD-LLLKYR-SGRTIIMSTHHMDEADLLGDRIAIISQGRLYCS 1141 (2272)
T ss_pred ECCCcCCCHHHHHHHHH-HHHHHh-CCCEEEEEECCHHHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999998 555555 4889999999988 5568999999999988654
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.1e-21 Score=202.26 Aligned_cols=147 Identities=20% Similarity=0.239 Sum_probs=115.4
Q ss_pred ccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh--------------hhhceeecCCCCC----CchH-----------
Q 004609 345 IKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------SKAGLYLPAKNHP----RLPW----------- 394 (742)
Q Consensus 345 l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m--------------aq~G~~vPa~~~~----~i~~----------- 394 (742)
|++.+| ++++|+||||||||||||++ |+..+- .+...|+|+.... .++.
T Consensus 1 l~i~~G-e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~ 79 (223)
T TIGR03771 1 LSADKG-ELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGH 79 (223)
T ss_pred CccCCC-cEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhccccc
Confidence 467789 99999999999999999999 554321 1123466665311 0111
Q ss_pred --------------HHHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHH
Q 004609 395 --------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQY 459 (742)
Q Consensus 395 --------------~d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLDEp~~glDp~~~~aL~~all~~ 459 (742)
+..++..+|+.+..++.+++||+||+ |++++++++.+|+++||||||+|||+.....+...+ ..
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l-~~ 158 (223)
T TIGR03771 80 IGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELF-IE 158 (223)
T ss_pred cccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH-HH
Confidence 22345667777778889999999999 899999999999999999999999999999999954 45
Q ss_pred HhcCCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 460 LRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 460 l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
+.+++.|+|++||+.+ +..+|++++.+ +|.+..+
T Consensus 159 ~~~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~ 193 (223)
T TIGR03771 159 LAGAGTAILMTTHDLAQAMATCDRVVLL-NGRVIAD 193 (223)
T ss_pred HHHcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEee
Confidence 5666889999999987 66789999888 7887654
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. |
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.2e-22 Score=193.41 Aligned_cols=154 Identities=21% Similarity=0.329 Sum_probs=129.8
Q ss_pred EEEeeeeeecCCce--e--cccccccCCceEEEEEeCCCCCcchHHhhHHhhhhhhhhceeecCCCC-------------
Q 004609 327 MTVGSLSKGISDFP--V--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNH------------- 389 (742)
Q Consensus 327 l~~~nl~~~y~~~~--v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~lGli~~maq~G~~vPa~~~------------- 389 (742)
+.+++++.+|++++ + ++|+++.+| +.++++||+||||||+|+.+ +|+..|+.|.
T Consensus 4 l~~~~~sl~y~g~~~~~le~vsL~ia~g-e~vv~lGpSGcGKTTLLnl~--------AGf~~P~~G~i~l~~r~i~gPga 74 (259)
T COG4525 4 LNVSHLSLSYEGKPRSALEDVSLTIASG-ELVVVLGPSGCGKTTLLNLI--------AGFVTPSRGSIQLNGRRIEGPGA 74 (259)
T ss_pred eehhheEEecCCcchhhhhccceeecCC-CEEEEEcCCCccHHHHHHHH--------hcCcCcccceEEECCEeccCCCc
Confidence 45678999998876 3 999999999 99999999999999999999 5655555552
Q ss_pred ---------CCchH------------------------HHHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEE
Q 004609 390 ---------PRLPW------------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLV 435 (742)
Q Consensus 390 ---------~~i~~------------------------~d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~Ll 435 (742)
.-+|| .++.+..+|+++.-++.+-.|||||+ |+.++++++-+|.++
T Consensus 75 ergvVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~L 154 (259)
T COG4525 75 ERGVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLL 154 (259)
T ss_pred cceeEeccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceE
Confidence 22333 23457788998888999999999999 999999999999999
Q ss_pred EEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChhhhh-hcccccceecc
Q 004609 436 LIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSC-LKDKDTRFENA 489 (742)
Q Consensus 436 LLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~l~~-~a~~~~~i~~g 489 (742)
|||||+..+|.-.+..+...+++.-...|..++++||+.+.+- ++++.+.+..+
T Consensus 155 lLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~ 209 (259)
T COG4525 155 LLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPG 209 (259)
T ss_pred eecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCC
Confidence 9999999999999999999888888888999999999987554 57777666543
|
|
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.5e-21 Score=226.89 Aligned_cols=160 Identities=18% Similarity=0.248 Sum_probs=127.5
Q ss_pred CcEEEeeeeeecCCc-----ee--cccccccCCceEEEEEeCCCCCcchHHhhHHhhhhhhhhceeecCCCCCCc-----
Q 004609 325 SEMTVGSLSKGISDF-----PV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRL----- 392 (742)
Q Consensus 325 ~~l~~~nl~~~y~~~-----~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~lGli~~maq~G~~vPa~~~~~i----- 392 (742)
+.++++||+++|++. ++ ++||++++| ++++|+|||||||||+++++ +|.+.|.+|...+
T Consensus 336 ~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G-~~~aivG~sGsGKSTl~~ll--------~g~~~p~~G~i~~~g~~i 406 (555)
T TIGR01194 336 DSIELKDVHMNPKAPEGSEGFALGPIDLRIAQG-DIVFIVGENGCGKSTLAKLF--------CGLYIPQEGEILLDGAAV 406 (555)
T ss_pred ceEEEEEEEEEeCCCCCCcCceeccceEEEcCC-cEEEEECCCCCCHHHHHHHH--------hCCCCCCCcEEEECCEEC
Confidence 468999999999752 34 999999999 99999999999999999999 4444444441100
Q ss_pred ------------------------------------hHHHHHHHHcCCcccccc------ccccchHHHH-HHHHHHHhc
Q 004609 393 ------------------------------------PWFDLILADIGDHQSLEQ------NLSTFSGHIS-RIVDILELV 429 (742)
Q Consensus 393 ------------------------------------~~~d~il~~ig~~~~~~~------~lstfSgg~k-rl~~~~~l~ 429 (742)
.-+.+.+...++.+.+.. ....|||||+ |++++++++
T Consensus 407 ~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall 486 (555)
T TIGR01194 407 SADSRDDYRDLFSAIFADFHLFDDLIGPDEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWL 486 (555)
T ss_pred CCCCHHHHHhhCcEEccChhhhhhhhhcccccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHH
Confidence 001234455555554432 1368999999 999999999
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcccccceecceEEE
Q 004609 430 SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEF 493 (742)
Q Consensus 430 ~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~l~~~a~~~~~i~~g~~~~ 493 (742)
.+|+++||||||+++|+.....+.+.+++.+...+.|+|++||+.+....||++..+++|++.-
T Consensus 487 ~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~~l~~G~i~~ 550 (555)
T TIGR01194 487 EDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCIVK 550 (555)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999988777666556889999999998778999999999998754
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.2e-22 Score=218.77 Aligned_cols=165 Identities=24% Similarity=0.273 Sum_probs=132.7
Q ss_pred CcEEEeeeeeecCCcee---cccccccCCceEEEEEeCCCCCcchHHhhH-HhhhhhhhhceeecCCCCCCchH------
Q 004609 325 SEMTVGSLSKGISDFPV---PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMSKAGLYLPAKNHPRLPW------ 394 (742)
Q Consensus 325 ~~l~~~nl~~~y~~~~v---~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~maq~G~~vPa~~~~~i~~------ 394 (742)
.++.+.|++|+|.+.+. +++|-+..+ ..++++||||+|||||||++ |.+.+. .|...|-.+ ..++.
T Consensus 388 pvi~~~nv~F~y~~~~~iy~~l~fgid~~-srvAlVGPNG~GKsTLlKl~~gdl~p~--~G~vs~~~H-~~~~~y~Qh~~ 463 (614)
T KOG0927|consen 388 PVIMVQNVSFGYSDNPMIYKKLNFGIDLD-SRVALVGPNGAGKSTLLKLITGDLQPT--IGMVSRHSH-NKLPRYNQHLA 463 (614)
T ss_pred CeEEEeccccCCCCcchhhhhhhcccCcc-cceeEecCCCCchhhhHHHHhhccccc--ccccccccc-ccchhhhhhhH
Confidence 47889999999987643 888999999 89999999999999999999 443332 222222221 22222
Q ss_pred -------------------------HHHHHHHcCCc-cccccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHH
Q 004609 395 -------------------------FDLILADIGDH-QSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPS 447 (742)
Q Consensus 395 -------------------------~d~il~~ig~~-~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLDEp~~glDp~ 447 (742)
+..++.++|+. +....++++||+||+ |+.+++.++..|.||||||||+|||+.
T Consensus 464 e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~ 543 (614)
T KOG0927|consen 464 EQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIE 543 (614)
T ss_pred hhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCch
Confidence 34567778876 666789999999999 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEecCc
Q 004609 448 EGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFSLET 497 (742)
Q Consensus 448 ~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~~~~ 497 (742)
...++++||-++ .+++|++|||.. +.++++.++.+.|+.+.-..+.
T Consensus 544 tid~laeaiNe~----~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~~~G~ 590 (614)
T KOG0927|consen 544 TIDALAEAINEF----PGGVVLVSHDFRLISQVAEEIWVCENGTVTKWDGD 590 (614)
T ss_pred hHHHHHHHHhcc----CCceeeeechhhHHHHHHHHhHhhccCceeecCcc
Confidence 999999977666 889999999977 7789999999999987655443
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=99.86 E-value=2e-21 Score=225.40 Aligned_cols=168 Identities=24% Similarity=0.248 Sum_probs=127.8
Q ss_pred CcEEEeeeeeecCC--cee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhh-------------------hhhh
Q 004609 325 SEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKA 380 (742)
Q Consensus 325 ~~l~~~nl~~~y~~--~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~-------------------maq~ 380 (742)
+.++++|++++|++ +++ ++||++++| +.++|+||||||||||+|++ |+..+ +.+.
T Consensus 315 ~~i~~~~v~~~y~~~~~~~l~~~~~~i~~G-~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~ 393 (544)
T TIGR01842 315 GHLSVENVTIVPPGGKKPTLRGISFRLQAG-EALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKH 393 (544)
T ss_pred CeEEEEEEEEEcCCCCccccccceEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhh
Confidence 46899999999953 344 999999999 99999999999999999999 44432 1122
Q ss_pred ceeecCCCCC-CchHHHHH------------------------HHHc--CCccccccccccchHHHH-HHHHHHHhcCCC
Q 004609 381 GLYLPAKNHP-RLPWFDLI------------------------LADI--GDHQSLEQNLSTFSGHIS-RIVDILELVSRE 432 (742)
Q Consensus 381 G~~vPa~~~~-~i~~~d~i------------------------l~~i--g~~~~~~~~lstfSgg~k-rl~~~~~l~~~~ 432 (742)
..++|++... .-++.+++ +..+ |++..+..+..+|||||+ |++++++++.+|
T Consensus 394 i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~ 473 (544)
T TIGR01842 394 IGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDP 473 (544)
T ss_pred eEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCC
Confidence 3455655310 00112222 2222 233345566788999999 999999999999
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcccccceecceEEEe
Q 004609 433 SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 433 ~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~l~~~a~~~~~i~~g~~~~~ 494 (742)
+++||||||+|+|+.....+.+.+. .+...+.|+|++||+.+....+|+++.+++|++...
T Consensus 474 ~ililDEpts~LD~~~~~~i~~~l~-~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~ 534 (544)
T TIGR01842 474 KLVVLDEPNSNLDEEGEQALANAIK-ALKARGITVVVITHRPSLLGCVDKILVLQDGRIARF 534 (544)
T ss_pred CEEEEeCCccccCHHHHHHHHHHHH-HHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEee
Confidence 9999999999999999999988554 444457899999999987788999999999988643
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.9e-21 Score=228.63 Aligned_cols=160 Identities=21% Similarity=0.276 Sum_probs=129.3
Q ss_pred CCcEEEeeeeeecCCc--ee--cccccccCCceEEEEEeCCCCCcchHHhhHHhhhhhhhhceeecCCCCCCch------
Q 004609 324 NSEMTVGSLSKGISDF--PV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLP------ 393 (742)
Q Consensus 324 ~~~l~~~nl~~~y~~~--~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~lGli~~maq~G~~vPa~~~~~i~------ 393 (742)
.|.++++||+|.|+.. .+ ++|+++++| +.++|+|+||||||||+|++ .|+|.|..|...+.
T Consensus 469 ~g~I~~~nvsf~y~~~~~~vL~~isL~I~~G-e~vaIvG~SGsGKSTL~KLL--------~gly~p~~G~I~~dg~dl~~ 539 (709)
T COG2274 469 QGEIEFENVSFRYGPDDPPVLEDLSLEIPPG-EKVAIVGRSGSGKSTLLKLL--------LGLYKPQQGRILLDGVDLND 539 (709)
T ss_pred CceEEEEEEEEEeCCCCcchhhceeEEeCCC-CEEEEECCCCCCHHHHHHHH--------hcCCCCCCceEEECCEeHHh
Confidence 3689999999999754 34 999999999 99999999999999999999 56666655522111
Q ss_pred -----------------------HHH------------HHH---HH-----------cCCccccccccccchHHHH-HHH
Q 004609 394 -----------------------WFD------------LIL---AD-----------IGDHQSLEQNLSTFSGHIS-RIV 423 (742)
Q Consensus 394 -----------------------~~d------------~il---~~-----------ig~~~~~~~~lstfSgg~k-rl~ 423 (742)
+.| ++. .. +|.+..+...-+.|||||| |++
T Consensus 540 i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrla 619 (709)
T COG2274 540 IDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLA 619 (709)
T ss_pred cCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHH
Confidence 111 111 11 2334455677889999999 999
Q ss_pred HHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcccccceecceEEEe
Q 004609 424 DILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 424 ~~~~l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~l~~~a~~~~~i~~g~~~~~ 494 (742)
+|++++++|++|||||||++||+.....+.+.+.+. .. |+|+|++||.......||+++.++.|++..+
T Consensus 620 lARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~-~~-~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~ 688 (709)
T COG2274 620 LARALLSKPKILLLDEATSALDPETEAIILQNLLQI-LQ-GRTVIIIAHRLSTIRSADRIIVLDQGKIVEQ 688 (709)
T ss_pred HHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHH-hc-CCeEEEEEccchHhhhccEEEEccCCceecc
Confidence 999999999999999999999999999988866654 22 5899999999999999999999999998765
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2e-21 Score=205.16 Aligned_cols=165 Identities=18% Similarity=0.199 Sum_probs=131.0
Q ss_pred EEEeeeeeecCC-----cee-cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhh-h-h--------------------
Q 004609 327 MTVGSLSKGISD-----FPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLAS-L-M-------------------- 377 (742)
Q Consensus 327 l~~~nl~~~y~~-----~~v-~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~-~-m-------------------- 377 (742)
++++||+..|.. +.| ++||++.+| ++++|+|.+||||||+.+.| |++. . .
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~G-E~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~ 80 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKG-EILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEK 80 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCC-cEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHH
Confidence 568899988843 234 999999999 99999999999999999999 7664 1 0
Q ss_pred ------hhhceeecCCCCCCch----H-----------------------HHHHHHHcCCcc---ccccccccchHHHH-
Q 004609 378 ------SKAGLYLPAKNHPRLP----W-----------------------FDLILADIGDHQ---SLEQNLSTFSGHIS- 420 (742)
Q Consensus 378 ------aq~G~~vPa~~~~~i~----~-----------------------~d~il~~ig~~~---~~~~~lstfSgg~k- 420 (742)
++-..++||+....+. + ...+|..+|+.+ .++.++..|||||+
T Consensus 81 ~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQ 160 (316)
T COG0444 81 ELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQ 160 (316)
T ss_pred HHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHH
Confidence 1122455665421111 0 112455666654 56899999999999
Q ss_pred HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEecChh-hhhhcccccceecceEEE
Q 004609 421 RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEF 493 (742)
Q Consensus 421 rl~~~~~l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~-~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~ 493 (742)
|+.+|.+++.+|+|||.||||++||...++.+.+ ++..+.+ .|.++|++|||+. ...+||++.+|..|.++-
T Consensus 161 RV~IAmala~~P~LlIADEPTTALDvt~QaqIl~-Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iVE 234 (316)
T COG0444 161 RVMIAMALALNPKLLIADEPTTALDVTVQAQILD-LLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVE 234 (316)
T ss_pred HHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEEE
Confidence 8999999999999999999999999999999999 6666665 7889999999998 668999999999998854
|
|
| >COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.4e-21 Score=186.37 Aligned_cols=159 Identities=23% Similarity=0.245 Sum_probs=122.6
Q ss_pred cEEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhHHhhhhhhhhceeecCCCCC-------------
Q 004609 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHP------------- 390 (742)
Q Consensus 326 ~l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~lGli~~maq~G~~vPa~~~~------------- 390 (742)
.+++.++++.||...- ++||.+.+| ++++|+|.+||||||||++| ++-..|+.|..
T Consensus 6 LL~V~~lsk~Yg~~~gc~~vsF~l~PG-eVLgiVGESGSGKtTLL~~i--------s~rl~p~~G~v~Y~~r~~~~~dl~ 76 (258)
T COG4107 6 LLSVSGLSKLYGPGKGCRDVSFDLYPG-EVLGIVGESGSGKTTLLKCI--------SGRLTPDAGTVTYRMRDGQPRDLY 76 (258)
T ss_pred ceeehhhhhhhCCCcCccccceeecCC-cEEEEEecCCCcHHhHHHHH--------hcccCCCCCeEEEEcCCCCchhHh
Confidence 3567889999987543 999999999 99999999999999999999 33333333310
Q ss_pred ----------------------------------Cch---------HHHH-------HHHHcCC-ccccccccccchHHH
Q 004609 391 ----------------------------------RLP---------WFDL-------ILADIGD-HQSLEQNLSTFSGHI 419 (742)
Q Consensus 391 ----------------------------------~i~---------~~d~-------il~~ig~-~~~~~~~lstfSgg~ 419 (742)
.++ .+.+ .+.++.+ .+.++..+.+|||||
T Consensus 77 ~msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGM 156 (258)
T COG4107 77 TMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGM 156 (258)
T ss_pred hhchHHHHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHH
Confidence 000 0111 1333332 345778899999999
Q ss_pred H-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChhhhh-hcccccceecceEEE
Q 004609 420 S-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSC-LKDKDTRFENAATEF 493 (742)
Q Consensus 420 k-rl~~~~~l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~l~~-~a~~~~~i~~g~~~~ 493 (742)
+ |+.+++.+++.|.|+++||||.|||..-.+.|.+.+-....+.+..++++|||+.... ++++...+..|.+.-
T Consensus 157 qQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve 232 (258)
T COG4107 157 QQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVE 232 (258)
T ss_pred HHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEec
Confidence 9 9999999999999999999999999999999999444444566889999999999765 578888888887753
|
|
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.2e-21 Score=226.97 Aligned_cols=166 Identities=14% Similarity=0.135 Sum_probs=126.1
Q ss_pred CcEEEeeeeeecCC-cee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhh-------------------hhhhc
Q 004609 325 SEMTVGSLSKGISD-FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKAG 381 (742)
Q Consensus 325 ~~l~~~nl~~~y~~-~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~-------------------maq~G 381 (742)
+.++++|++++|++ .++ ++|+++++| +.++|+||||||||||+|++ |+..+ +.+.-
T Consensus 333 ~~I~~~~vsf~y~~~~~iL~~inl~i~~G-~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 411 (588)
T PRK13657 333 GAVEFDDVSFSYDNSRQGVEDVSFEAKPG-QTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNI 411 (588)
T ss_pred CeEEEEEEEEEeCCCCceecceeEEECCC-CEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhhe
Confidence 46899999999964 445 999999999 99999999999999999999 44432 11233
Q ss_pred eeecCCCCC-CchHHHH---------------HHHHcCCc-----------cccccccccchHHHH-HHHHHHHhcCCCc
Q 004609 382 LYLPAKNHP-RLPWFDL---------------ILADIGDH-----------QSLEQNLSTFSGHIS-RIVDILELVSRES 433 (742)
Q Consensus 382 ~~vPa~~~~-~i~~~d~---------------il~~ig~~-----------~~~~~~lstfSgg~k-rl~~~~~l~~~~~ 433 (742)
.|+|++... .-++.++ .+...|+. ..+......|||||+ |+++|++++.+|+
T Consensus 412 ~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~ 491 (588)
T PRK13657 412 AVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPP 491 (588)
T ss_pred EEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 455555410 0011222 22222322 223445567999999 9999999999999
Q ss_pred EEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcccccceecceEEE
Q 004609 434 LVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEF 493 (742)
Q Consensus 434 LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~l~~~a~~~~~i~~g~~~~ 493 (742)
++||||||++||+.....+.+.+.+ +. .++|+|++||+......+|+++.+.+|++..
T Consensus 492 iliLDEpts~LD~~t~~~i~~~l~~-~~-~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~ 549 (588)
T PRK13657 492 ILILDEATSALDVETEAKVKAALDE-LM-KGRTTFIIAHRLSTVRNADRILVFDNGRVVE 549 (588)
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHH-Hh-cCCEEEEEEecHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999886654 33 3689999999999888999999999998763
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.4e-21 Score=230.60 Aligned_cols=165 Identities=16% Similarity=0.190 Sum_probs=125.9
Q ss_pred CcEEEeeeeeecC--Ccee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhh-------------------hhhh
Q 004609 325 SEMTVGSLSKGIS--DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKA 380 (742)
Q Consensus 325 ~~l~~~nl~~~y~--~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~-------------------maq~ 380 (742)
+.++++||+|+|+ ++++ ++||++++| +.++|+||||||||||+|++ |+..+ +.+.
T Consensus 450 ~~I~~~nvsf~Y~~~~~~vL~~isl~i~~G-e~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~ 528 (686)
T TIGR03797 450 GAIEVDRVTFRYRPDGPLILDDVSLQIEPG-EFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQ 528 (686)
T ss_pred ceEEEEEEEEEcCCCCccceeeeEEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhc
Confidence 5689999999995 2345 999999999 99999999999999999999 44422 1222
Q ss_pred ceeecCCCCC-CchHHHH--------------HHHHcCCccc-----------cccccccchHHHH-HHHHHHHhcCCCc
Q 004609 381 GLYLPAKNHP-RLPWFDL--------------ILADIGDHQS-----------LEQNLSTFSGHIS-RIVDILELVSRES 433 (742)
Q Consensus 381 G~~vPa~~~~-~i~~~d~--------------il~~ig~~~~-----------~~~~lstfSgg~k-rl~~~~~l~~~~~ 433 (742)
..++|++... .-++.++ .+...|..+. +...-+.|||||+ |+++|++++.+|+
T Consensus 529 i~~v~Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~ 608 (686)
T TIGR03797 529 LGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPR 608 (686)
T ss_pred cEEEccCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 3455554311 0011222 2333333332 3344578999999 9999999999999
Q ss_pred EEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcccccceecceEEEe
Q 004609 434 LVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 434 LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~l~~~a~~~~~i~~g~~~~~ 494 (742)
++||||||+++|+.....+.+.+.+. +.|+|++||..+....+|+++.+++|++..+
T Consensus 609 iLiLDEpTS~LD~~te~~i~~~L~~~----~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~ 665 (686)
T TIGR03797 609 ILLFDEATSALDNRTQAIVSESLERL----KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQ 665 (686)
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHh----CCeEEEEecChHHHHcCCEEEEEECCEEEEE
Confidence 99999999999999999988865543 6799999999998888999999999998754
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.4e-21 Score=184.39 Aligned_cols=165 Identities=17% Similarity=0.244 Sum_probs=133.5
Q ss_pred EEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhHHhhhhhhhhcee---------------------
Q 004609 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLY--------------------- 383 (742)
Q Consensus 327 l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~lGli~~maq~G~~--------------------- 383 (742)
+.++|+++.||...+ +++++.+.| +.++++||+|+|||||||++.|+-. ...|-.
T Consensus 3 irv~~in~~yg~~q~lfdi~l~~~~g-etlvllgpsgagkssllr~lnlle~-p~sg~l~ia~~~fd~s~~~~~k~i~~l 80 (242)
T COG4161 3 IQLNGINCFYGAHQALFDITLDCPEG-ETLVLLGPSGAGKSSLLRVLNLLEM-PRSGTLNIAGNHFDFSKTPSDKAIRDL 80 (242)
T ss_pred eEEcccccccccchheeeeeecCCCC-CEEEEECCCCCchHHHHHHHHHHhC-CCCCeEEecccccccccCccHHHHHHH
Confidence 678899999997655 899999999 9999999999999999999966532 111211
Q ss_pred ------ecCCC--CCCchHHH----------------------HHHHHcCCccccccccccchHHHH-HHHHHHHhcCCC
Q 004609 384 ------LPAKN--HPRLPWFD----------------------LILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRE 432 (742)
Q Consensus 384 ------vPa~~--~~~i~~~d----------------------~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~ 432 (742)
|++.- ...+++++ .++.++.+.+..++.+-.||||++ |++++++++.+|
T Consensus 81 r~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmkp 160 (242)
T COG4161 81 RRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEP 160 (242)
T ss_pred HHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcCC
Confidence 11111 01112222 356777888999999999999998 999999999999
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChhhh-hhcccccceecceEEEe
Q 004609 433 SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLS-CLKDKDTRFENAATEFS 494 (742)
Q Consensus 433 ~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~l~-~~a~~~~~i~~g~~~~~ 494 (742)
.++|+||||+.|||+-...+.. |++.+...|.|-+++||..+.+ ..+.+...+++|++.-.
T Consensus 161 qvllfdeptaaldpeitaqvv~-iikel~~tgitqvivthev~va~k~as~vvyme~g~ive~ 222 (242)
T COG4161 161 QVLLFDEPTAALDPEITAQIVS-IIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQ 222 (242)
T ss_pred cEEeecCcccccCHHHHHHHHH-HHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeEee
Confidence 9999999999999999999988 8888999999999999999855 58899999999988644
|
|
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-21 Score=187.79 Aligned_cols=149 Identities=26% Similarity=0.322 Sum_probs=118.7
Q ss_pred cccccccCCceEEEEEeCCCCCcchHHhhHHhh-hhh-------------------hhhceeecCCC---------CCCc
Q 004609 342 PIDIKVECETRVVVITGPNTGGKTASMKTLGLA-SLM-------------------SKAGLYLPAKN---------HPRL 392 (742)
Q Consensus 342 ~i~l~l~~g~~~~~ItGpNGsGKSTlLK~lGli-~~m-------------------aq~G~~vPa~~---------~~~i 392 (742)
++||.+.+| ++++||||+|||||||||+++.+ .+- .|-..|+-+.+ +..+
T Consensus 21 ~isl~v~~G-e~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVeDNlif 99 (223)
T COG4619 21 NISLSVRAG-EFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVEDNLIF 99 (223)
T ss_pred ceeeeecCC-ceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccchhhcccc
Confidence 999999999 99999999999999999999433 210 11111221111 0112
Q ss_pred hH-----------HHHHHHHcCCccc-cccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHH
Q 004609 393 PW-----------FDLILADIGDHQS-LEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQY 459 (742)
Q Consensus 393 ~~-----------~d~il~~ig~~~~-~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLDEp~~glDp~~~~aL~~all~~ 459 (742)
|+ +-.++++++..++ +.+++..||||++ |+++++.+..-|.+|||||||+.||+.....+..-|..+
T Consensus 100 P~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~ie~mi~~~ 179 (223)
T COG4619 100 PWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRY 179 (223)
T ss_pred chHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHHHHHHHHHHH
Confidence 22 3456788887664 5788999999999 899999999999999999999999999999999988888
Q ss_pred HhcCCcEEEEEecChhh-hhhcccccceecceE
Q 004609 460 LRDRVGLAVVTTHYADL-SCLKDKDTRFENAAT 491 (742)
Q Consensus 460 l~~~~~~vlitTH~~~l-~~~a~~~~~i~~g~~ 491 (742)
++++...++.+|||.+- .+.+++.+.+..|+.
T Consensus 180 v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~ 212 (223)
T COG4619 180 VREQNVAVLWITHDKDQAIRHADKVITLQPGHA 212 (223)
T ss_pred hhhhceEEEEEecChHHHhhhhheEEEeccCcc
Confidence 88888999999999874 678999988888765
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.8e-21 Score=225.07 Aligned_cols=153 Identities=21% Similarity=0.195 Sum_probs=118.2
Q ss_pred eeeeecCCc-ee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh-hh--------------hc----------
Q 004609 331 SLSKGISDF-PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-SK--------------AG---------- 381 (742)
Q Consensus 331 nl~~~y~~~-~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m-aq--------------~G---------- 381 (742)
++++.||.. ++ +++ .+.+| ++++|+||||+|||||||+| |++.+- +. .|
T Consensus 78 ~~~~~yg~~~~~L~~l~-~i~~G-ev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~ 155 (590)
T PRK13409 78 EPVHRYGVNGFKLYGLP-IPKEG-KVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKL 155 (590)
T ss_pred CceEEecCCceeEecCC-cCCCC-CEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHH
Confidence 378899863 34 888 79999 99999999999999999999 544221 00 00
Q ss_pred -------eeecCCCCCCc------h------------HHHHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEE
Q 004609 382 -------LYLPAKNHPRL------P------------WFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLV 435 (742)
Q Consensus 382 -------~~vPa~~~~~i------~------------~~d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~Ll 435 (742)
.+.|+.- ... . .++.++..+|+....++.+++|||||+ |++++++++.+|+++
T Consensus 156 ~~~~~~~~~~~q~~-~~~p~~~~~tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~p~ll 234 (590)
T PRK13409 156 YNGEIKVVHKPQYV-DLIPKVFKGKVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFY 234 (590)
T ss_pred hccCcceeecccch-hhhhhhhcchHHHHHHhhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 1112110 000 0 123456678888888999999999999 899999999999999
Q ss_pred EEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceec
Q 004609 436 LIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFEN 488 (742)
Q Consensus 436 LLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~ 488 (742)
||||||+|||+.....+.. ++..+.+ +.++|++||+.+ +..+++++..+.+
T Consensus 235 lLDEPts~LD~~~~~~l~~-~i~~l~~-g~tvIivsHd~~~l~~~~D~v~vl~~ 286 (590)
T PRK13409 235 FFDEPTSYLDIRQRLNVAR-LIRELAE-GKYVLVVEHDLAVLDYLADNVHIAYG 286 (590)
T ss_pred EEECCCCCCCHHHHHHHHH-HHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 9999999999999999998 5566777 899999999987 5678888877755
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.1e-21 Score=231.95 Aligned_cols=165 Identities=17% Similarity=0.175 Sum_probs=126.8
Q ss_pred CcEEEeeeeeecCC--cee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhh-------------------hhhh
Q 004609 325 SEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKA 380 (742)
Q Consensus 325 ~~l~~~nl~~~y~~--~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~-------------------maq~ 380 (742)
+.++++||+|+|++ +++ ++||++++| +.++|+||||||||||+|++ |+..+ +.+.
T Consensus 476 ~~I~~~~vsf~y~~~~~~vL~~isl~i~~G-e~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~ 554 (710)
T TIGR03796 476 GYVELRNITFGYSPLEPPLIENFSLTLQPG-QRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANS 554 (710)
T ss_pred CeEEEEEEEEecCCCCCCcccceeEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhh
Confidence 57899999999974 445 999999999 99999999999999999999 44422 1222
Q ss_pred ceeecCCCCC-CchHHHH---------------HHHHcC-----------CccccccccccchHHHH-HHHHHHHhcCCC
Q 004609 381 GLYLPAKNHP-RLPWFDL---------------ILADIG-----------DHQSLEQNLSTFSGHIS-RIVDILELVSRE 432 (742)
Q Consensus 381 G~~vPa~~~~-~i~~~d~---------------il~~ig-----------~~~~~~~~lstfSgg~k-rl~~~~~l~~~~ 432 (742)
..++|++... .-++.++ .+...| .+..+...-..|||||+ |++++++++.+|
T Consensus 555 i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p 634 (710)
T TIGR03796 555 VAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNP 634 (710)
T ss_pred eeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCC
Confidence 3455655410 0011122 222222 23334455678999999 999999999999
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcccccceecceEEEe
Q 004609 433 SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 433 ~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~l~~~a~~~~~i~~g~~~~~ 494 (742)
+++||||||++||+.....+.+.+.+ .++|+|++||..+....+|+++.+++|.+...
T Consensus 635 ~iliLDEptS~LD~~te~~i~~~l~~----~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~~ 692 (710)
T TIGR03796 635 SILILDEATSALDPETEKIIDDNLRR----RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQR 692 (710)
T ss_pred CEEEEECccccCCHHHHHHHHHHHHh----cCCEEEEEecCHHHHHhCCEEEEEeCCEEEEe
Confidence 99999999999999999998886543 47899999999998888999999999998754
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.3e-21 Score=218.05 Aligned_cols=169 Identities=16% Similarity=0.132 Sum_probs=133.4
Q ss_pred CcEEEeeeeeecCC------------cee-cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhhhhhc---------
Q 004609 325 SEMTVGSLSKGISD------------FPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMSKAG--------- 381 (742)
Q Consensus 325 ~~l~~~nl~~~y~~------------~~v-~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~maq~G--------- 381 (742)
-.++++||++.|.. +.| ++||++.+| ++++|+|++||||||+.|+| ||..+-+...
T Consensus 279 ~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~G-E~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~ 357 (539)
T COG1123 279 PLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREG-ETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDL 357 (539)
T ss_pred ceeEeeeeeeeeccccccccccccceeeeeeeeeEecCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCccccc
Confidence 46789999999973 113 999999999 99999999999999999999 5543310000
Q ss_pred ------------eeecCCCCCC----chH----------------------HHHHHHHcCCcc-ccccccccchHHHH-H
Q 004609 382 ------------LYLPAKNHPR----LPW----------------------FDLILADIGDHQ-SLEQNLSTFSGHIS-R 421 (742)
Q Consensus 382 ------------~~vPa~~~~~----i~~----------------------~d~il~~ig~~~-~~~~~lstfSgg~k-r 421 (742)
-.++++.++. +++ ++.++..+|+.. .+++++..|||||+ |
T Consensus 358 ~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQR 437 (539)
T COG1123 358 TGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQR 437 (539)
T ss_pred ccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHH
Confidence 0111111111 111 344577788776 58999999999999 9
Q ss_pred HHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 422 IVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 422 l~~~~~l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
+++|++++.+|.+|++|||++.||+...+.+.+.+.+.-.+.|.|.||+|||+. ...+||++..|.+|.++-.
T Consensus 438 vaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iVE~ 511 (539)
T COG1123 438 VAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEE 511 (539)
T ss_pred HHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEEEe
Confidence 999999999999999999999999999999999666655666999999999998 5678999999999988654
|
|
| >COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.4e-21 Score=191.75 Aligned_cols=168 Identities=23% Similarity=0.263 Sum_probs=133.1
Q ss_pred cEEEeeeeeecCCc-ee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhh---------------------hhhh
Q 004609 326 EMTVGSLSKGISDF-PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL---------------------MSKA 380 (742)
Q Consensus 326 ~l~~~nl~~~y~~~-~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~---------------------maq~ 380 (742)
.|+++||....+++ .+ ++|+++++| ++.+|.||||||||||.++| |.-.| .|+.
T Consensus 3 ~L~I~dLhv~v~~~keILkgvnL~v~~G-EvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~ 81 (251)
T COG0396 3 MLEIKDLHVEVEGKKEILKGVNLTVKEG-EVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARA 81 (251)
T ss_pred eeEEeeeEEEecCchhhhcCcceeEcCC-cEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhc
Confidence 46788999988874 66 999999999 99999999999999999999 43322 3677
Q ss_pred ceeecCCCCCCchH---------------------------HHHHHHHcCCcc-ccccccc-cchHHHH-HHHHHHHhcC
Q 004609 381 GLYLPAKNHPRLPW---------------------------FDLILADIGDHQ-SLEQNLS-TFSGHIS-RIVDILELVS 430 (742)
Q Consensus 381 G~~vPa~~~~~i~~---------------------------~d~il~~ig~~~-~~~~~ls-tfSgg~k-rl~~~~~l~~ 430 (742)
|+|+..+.++.++. +...++.++... .+++++. .||||++ |.-++..++.
T Consensus 82 GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~l 161 (251)
T COG0396 82 GIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLL 161 (251)
T ss_pred CCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhc
Confidence 77764443333321 122344555544 6777776 6999999 7777788899
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhc--ccccceecceEEEec
Q 004609 431 RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLK--DKDTRFENAATEFSL 495 (742)
Q Consensus 431 ~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~l~~~a--~~~~~i~~g~~~~~~ 495 (742)
+|+++|||||-||||...-..++. .++.+++.+..++++|||..+..+. |....+.+|++....
T Consensus 162 ePkl~ILDE~DSGLDIdalk~V~~-~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~sG 227 (251)
T COG0396 162 EPKLAILDEPDSGLDIDALKIVAE-GINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSG 227 (251)
T ss_pred CCCEEEecCCCcCccHHHHHHHHH-HHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEEecC
Confidence 999999999999999999999998 6777888899999999999987765 777788899887653
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.6e-21 Score=224.52 Aligned_cols=167 Identities=18% Similarity=0.182 Sum_probs=128.5
Q ss_pred CcEEEeeeeeecCC--cee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhh-------------------hhhh
Q 004609 325 SEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKA 380 (742)
Q Consensus 325 ~~l~~~nl~~~y~~--~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~-------------------maq~ 380 (742)
+.+.++||+++|++ +++ ++||++++| +.++|+||||||||||+|++ |+..+ +.+.
T Consensus 337 ~~i~~~~v~f~y~~~~~~il~~i~~~i~~G-~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~ 415 (574)
T PRK11160 337 VSLTLNNVSFTYPDQPQPVLKGLSLQIKAG-EKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQA 415 (574)
T ss_pred CeEEEEEEEEECCCCCCcceecceEEECCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhh
Confidence 56899999999964 344 999999999 99999999999999999999 44322 1122
Q ss_pred ceeecCCCCC-CchH---------------HHHHHHHcCCcccccc----------ccccchHHHH-HHHHHHHhcCCCc
Q 004609 381 GLYLPAKNHP-RLPW---------------FDLILADIGDHQSLEQ----------NLSTFSGHIS-RIVDILELVSRES 433 (742)
Q Consensus 381 G~~vPa~~~~-~i~~---------------~d~il~~ig~~~~~~~----------~lstfSgg~k-rl~~~~~l~~~~~ 433 (742)
..++|++... .-++ +.+.+...+..+.+++ +...|||||+ |++++++++.+|+
T Consensus 416 i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~ 495 (574)
T PRK11160 416 ISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAP 495 (574)
T ss_pred eeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 2355554310 0011 2233445555555443 5677999999 9999999999999
Q ss_pred EEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcccccceecceEEEe
Q 004609 434 LVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 434 LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~l~~~a~~~~~i~~g~~~~~ 494 (742)
++||||||+++|+.....+..++.+. . .+.|+|++||..+....+|++..+++|++...
T Consensus 496 ililDE~ts~lD~~t~~~i~~~l~~~-~-~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~ 554 (574)
T PRK11160 496 LLLLDEPTEGLDAETERQILELLAEH-A-QNKTVLMITHRLTGLEQFDRICVMDNGQIIEQ 554 (574)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHH-c-CCCEEEEEecChhHHHhCCEEEEEeCCeEEEe
Confidence 99999999999999999999866554 3 37899999999987778999999999988643
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.1e-21 Score=213.35 Aligned_cols=158 Identities=19% Similarity=0.193 Sum_probs=130.6
Q ss_pred cEEEeeeeeecCCce--e--cccccccCCceEEEEEeCCCCCcchHHhhHHhhhhhhhhceeecCCCCCCch--------
Q 004609 326 EMTVGSLSKGISDFP--V--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLP-------- 393 (742)
Q Consensus 326 ~l~~~nl~~~y~~~~--v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~lGli~~maq~G~~vPa~~~~~i~-------- 393 (742)
.++++||+|.|.+.. + ++||++.+| +.++|+|++||||||++.++ .|.+.|++|...+.
T Consensus 336 ~l~~~~vsF~y~~~~~~~L~~~~l~l~~G-EkvAIlG~SGsGKSTllqLl--------~~~~~~~~G~i~~~g~~~~~l~ 406 (573)
T COG4987 336 ALELRNVSFTYPGQQTKALKNFNLTLAQG-EKVAILGRSGSGKSTLLQLL--------AGAWDPQQGSITLNGVEIASLD 406 (573)
T ss_pred eeeeccceeecCCCccchhhccceeecCC-CeEEEECCCCCCHHHHHHHH--------HhccCCCCCeeeECCcChhhCC
Confidence 789999999997644 4 999999999 99999999999999999999 88888877732211
Q ss_pred ----------------HH--------------------HHHHHHcCCcc-----------ccccccccchHHHH-HHHHH
Q 004609 394 ----------------WF--------------------DLILADIGDHQ-----------SLEQNLSTFSGHIS-RIVDI 425 (742)
Q Consensus 394 ----------------~~--------------------d~il~~ig~~~-----------~~~~~lstfSgg~k-rl~~~ 425 (742)
+| -.++..+|+++ .+...-..|||||+ |++++
T Consensus 407 ~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlA 486 (573)
T COG4987 407 EQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALA 486 (573)
T ss_pred hhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHH
Confidence 01 12344455433 44556678999999 99999
Q ss_pred HHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcccccceecceEEEe
Q 004609 426 LELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 426 ~~l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~l~~~a~~~~~i~~g~~~~~ 494 (742)
+.++++.+++||||||.||||..-..+...+.+.+. |.|+|++||+..-...+|+++.++||++...
T Consensus 487 R~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~--~kTll~vTHrL~~le~~drIivl~~Gkiie~ 553 (573)
T COG4987 487 RALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAE--GKTLLMVTHRLRGLERMDRIIVLDNGKIIEE 553 (573)
T ss_pred HHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhc--CCeEEEEecccccHhhcCEEEEEECCeeeec
Confidence 999999999999999999999999999986665543 7899999999988889999999999988765
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.4e-21 Score=210.64 Aligned_cols=157 Identities=20% Similarity=0.256 Sum_probs=136.1
Q ss_pred cEEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhHHhhhhhhhhceeecCCCCC-------------
Q 004609 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHP------------- 390 (742)
Q Consensus 326 ~l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~lGli~~maq~G~~vPa~~~~------------- 390 (742)
.+++++++|.|++... ++||++.+| ++.+|+|.||+|||||||++ +|.|.|.+|..
T Consensus 4 ~l~~~~itK~f~~~~And~V~l~v~~G-eIHaLLGENGAGKSTLm~iL--------~G~~~P~~GeI~v~G~~v~~~sP~ 74 (501)
T COG3845 4 ALEMRGITKRFPGVVANDDVSLSVKKG-EIHALLGENGAGKSTLMKIL--------FGLYQPDSGEIRVDGKEVRIKSPR 74 (501)
T ss_pred eEEEeccEEEcCCEEecCceeeeecCC-cEEEEeccCCCCHHHHHHHH--------hCcccCCcceEEECCEEeccCCHH
Confidence 4788999999996444 899999999 99999999999999999999 88888887721
Q ss_pred ------------------CchHHH------------------------HHHHHcCCccccccccccchHHHH-HHHHHHH
Q 004609 391 ------------------RLPWFD------------------------LILADIGDHQSLEQNLSTFSGHIS-RIVDILE 427 (742)
Q Consensus 391 ------------------~i~~~d------------------------~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~ 427 (742)
.+++++ .+..++|+.=+.+..++.||.|++ |+-++.+
T Consensus 75 dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKa 154 (501)
T COG3845 75 DAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKA 154 (501)
T ss_pred HHHHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHH
Confidence 112222 345566777788999999999988 8888899
Q ss_pred hcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEE
Q 004609 428 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATE 492 (742)
Q Consensus 428 l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~ 492 (742)
+..++++|||||||+-|-|.+...|.. ++..+++.|.+||++||-+. ...+||+...+..|++.
T Consensus 155 Lyr~a~iLILDEPTaVLTP~E~~~lf~-~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvv 219 (501)
T COG3845 155 LYRGARLLILDEPTAVLTPQEADELFE-ILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVV 219 (501)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEE
Confidence 999999999999999999999999998 78889999999999999965 88899999999999875
|
|
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.5e-21 Score=224.18 Aligned_cols=166 Identities=14% Similarity=0.127 Sum_probs=126.1
Q ss_pred CcEEEeeeeeecCC-cee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhh-------------------hhhhc
Q 004609 325 SEMTVGSLSKGISD-FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKAG 381 (742)
Q Consensus 325 ~~l~~~nl~~~y~~-~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~-------------------maq~G 381 (742)
+.++++|++++|++ ..+ ++||++++| +.++|+||||||||||++++ |+..+ +.+.-
T Consensus 333 ~~i~~~~v~~~y~~~~~~l~~i~~~i~~G-~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 411 (585)
T TIGR01192 333 GAVEFRHITFEFANSSQGVFDVSFEAKAG-QTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSI 411 (585)
T ss_pred CeEEEEEEEEECCCCCccccceeEEEcCC-CEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhhe
Confidence 46899999999975 334 999999999 99999999999999999999 44432 11223
Q ss_pred eeecCCCCC-CchHHHHH---------------HHHc-----------CCccccccccccchHHHH-HHHHHHHhcCCCc
Q 004609 382 LYLPAKNHP-RLPWFDLI---------------LADI-----------GDHQSLEQNLSTFSGHIS-RIVDILELVSRES 433 (742)
Q Consensus 382 ~~vPa~~~~-~i~~~d~i---------------l~~i-----------g~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~ 433 (742)
.++|++... .-++.+++ +... |.+..+......|||||+ |++++++++.+|+
T Consensus 412 ~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~ 491 (585)
T TIGR01192 412 ATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAP 491 (585)
T ss_pred EEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 355555310 01112221 1111 223334566778999999 9999999999999
Q ss_pred EEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcccccceecceEEE
Q 004609 434 LVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEF 493 (742)
Q Consensus 434 LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~l~~~a~~~~~i~~g~~~~ 493 (742)
++||||||+|||+.....+...+.+ +.+ +.|+|++||+.+....+|+++.+++|++..
T Consensus 492 ililDEpts~LD~~~~~~i~~~l~~-~~~-~~tvI~isH~~~~~~~~d~i~~l~~G~i~~ 549 (585)
T TIGR01192 492 ILVLDEATSALDVETEARVKNAIDA-LRK-NRTTFIIAHRLSTVRNADLVLFLDQGRLIE 549 (585)
T ss_pred EEEEECCccCCCHHHHHHHHHHHHH-HhC-CCEEEEEEcChHHHHcCCEEEEEECCEEEE
Confidence 9999999999999999999885544 443 789999999998777899999999998864
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.3e-21 Score=224.50 Aligned_cols=165 Identities=15% Similarity=0.162 Sum_probs=124.7
Q ss_pred CcEEEeeeeeec-CCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhh-------------------hhhhc
Q 004609 325 SEMTVGSLSKGI-SDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKAG 381 (742)
Q Consensus 325 ~~l~~~nl~~~y-~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~-------------------maq~G 381 (742)
+.+.++||++.| +++++ ++||++++| +.++|+||||||||||++++ |+. + +.+..
T Consensus 348 ~~i~~~~vsf~~~~~~~vL~~i~l~i~~G-~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i 425 (588)
T PRK11174 348 VTIEAEDLEILSPDGKTLAGPLNFTLPAG-QRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHL 425 (588)
T ss_pred ceEEEEeeEEeccCCCeeeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhhe
Confidence 468999999765 45555 999999999 99999999999999999999 443 2 11223
Q ss_pred eeecCCCCC-CchHHHHH---------------HH---------Hc--CCccccccccccchHHHH-HHHHHHHhcCCCc
Q 004609 382 LYLPAKNHP-RLPWFDLI---------------LA---------DI--GDHQSLEQNLSTFSGHIS-RIVDILELVSRES 433 (742)
Q Consensus 382 ~~vPa~~~~-~i~~~d~i---------------l~---------~i--g~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~ 433 (742)
.|+|++... .-++.++| +. .+ |++..+...-..|||||+ |+++||+++.+|+
T Consensus 426 ~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~ 505 (588)
T PRK11174 426 SWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQ 505 (588)
T ss_pred EEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 355554310 00112221 22 22 333344555678999999 9999999999999
Q ss_pred EEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcccccceecceEEE
Q 004609 434 LVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEF 493 (742)
Q Consensus 434 LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~l~~~a~~~~~i~~g~~~~ 493 (742)
++||||||++||+.....+.+++.+ +. .+.|+|++||..+....+|+++.+++|++..
T Consensus 506 IliLDE~TSaLD~~te~~i~~~l~~-~~-~~~TvIiItHrl~~i~~aD~Iivl~~G~i~e 563 (588)
T PRK11174 506 LLLLDEPTASLDAHSEQLVMQALNA-AS-RRQTTLMVTHQLEDLAQWDQIWVMQDGQIVQ 563 (588)
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHH-Hh-CCCEEEEEecChHHHHhCCEEEEEeCCeEee
Confidence 9999999999999999999986654 33 3689999999999888899999999998753
|
|
| >COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.2e-21 Score=196.17 Aligned_cols=144 Identities=19% Similarity=0.229 Sum_probs=122.9
Q ss_pred cccccccCCceEEEEEeCCCCCcchHHhhHHhhhhhhhhceeecCCCCCCc------------------hH---------
Q 004609 342 PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRL------------------PW--------- 394 (742)
Q Consensus 342 ~i~l~l~~g~~~~~ItGpNGsGKSTlLK~lGli~~maq~G~~vPa~~~~~i------------------~~--------- 394 (742)
++||++.+| +.++|+|+||||||||||+| +|.+.|..|...+ +.
T Consensus 45 disf~i~~G-e~vGiiG~NGaGKSTLlkli--------aGi~~Pt~G~v~v~G~v~~li~lg~Gf~pelTGreNi~l~~~ 115 (249)
T COG1134 45 DISFEIYKG-ERVGIIGHNGAGKSTLLKLI--------AGIYKPTSGKVKVTGKVAPLIELGAGFDPELTGRENIYLRGL 115 (249)
T ss_pred CceEEEeCC-CEEEEECCCCCcHHHHHHHH--------hCccCCCCceEEEcceEehhhhcccCCCcccchHHHHHHHHH
Confidence 999999999 99999999999999999999 8999998883211 11
Q ss_pred ------------HHHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHh
Q 004609 395 ------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLR 461 (742)
Q Consensus 395 ------------~d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~ 461 (742)
++.|..--.+++.++.++.++|.||+ |++++.+...+|++|||||..+--|+.-...-.. .+..+.
T Consensus 116 ~~G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~-rl~e~~ 194 (249)
T COG1134 116 ILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLE-RLNELV 194 (249)
T ss_pred HhCccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHH-HHHHHH
Confidence 23343334567889999999999999 9999999999999999999999999999888666 445555
Q ss_pred cCCcEEEEEecChh-hhhhcccccceecceEEEec
Q 004609 462 DRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFSL 495 (742)
Q Consensus 462 ~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~~ 495 (742)
+++.|+|++|||+. +.++|++..+++.|.+.+..
T Consensus 195 ~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G 229 (249)
T COG1134 195 EKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEG 229 (249)
T ss_pred HcCCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcC
Confidence 55799999999988 88999999999999998764
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.7e-21 Score=223.88 Aligned_cols=166 Identities=16% Similarity=0.175 Sum_probs=125.8
Q ss_pred CcEEEeeeeeecCC--cee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhh-------------------hhhh
Q 004609 325 SEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKA 380 (742)
Q Consensus 325 ~~l~~~nl~~~y~~--~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~-------------------maq~ 380 (742)
+.++++||+++|++ +++ ++|+++++| +.++|+||||||||||+|+| |+..+ +.+.
T Consensus 340 ~~i~~~~vsf~y~~~~~~il~~i~l~i~~G-~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ 418 (582)
T PRK11176 340 GDIEFRNVTFTYPGKEVPALRNINFKIPAG-KTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQ 418 (582)
T ss_pred CeEEEEEEEEecCCCCCccccCceEEeCCC-CEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhh
Confidence 46899999999964 445 999999999 99999999999999999999 55432 1223
Q ss_pred ceeecCCCCC-CchHHHHH----------------HHHcCCcc-----------ccccccccchHHHH-HHHHHHHhcCC
Q 004609 381 GLYLPAKNHP-RLPWFDLI----------------LADIGDHQ-----------SLEQNLSTFSGHIS-RIVDILELVSR 431 (742)
Q Consensus 381 G~~vPa~~~~-~i~~~d~i----------------l~~ig~~~-----------~~~~~lstfSgg~k-rl~~~~~l~~~ 431 (742)
-.|+|++... .-++-+++ +...|..+ .+...-..|||||+ |++++++++.+
T Consensus 419 i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~ 498 (582)
T PRK11176 419 VALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRD 498 (582)
T ss_pred ceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhC
Confidence 3456665410 00111222 22223222 22233466999999 99999999999
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcccccceecceEEE
Q 004609 432 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEF 493 (742)
Q Consensus 432 ~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~l~~~a~~~~~i~~g~~~~ 493 (742)
|+++||||||+++|+.....+..++.+ +.+ ++|+|++||+.+....||+++.+++|.+..
T Consensus 499 ~~ililDEptsaLD~~t~~~i~~~l~~-~~~-~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e 558 (582)
T PRK11176 499 SPILILDEATSALDTESERAIQAALDE-LQK-NRTSLVIAHRLSTIEKADEILVVEDGEIVE 558 (582)
T ss_pred CCEEEEECccccCCHHHHHHHHHHHHH-HhC-CCEEEEEecchHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999986655 333 689999999999888899999999998764
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.3e-21 Score=227.94 Aligned_cols=167 Identities=19% Similarity=0.180 Sum_probs=126.2
Q ss_pred CcEEEeeeeeecCC--cee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhh-------------------hhhh
Q 004609 325 SEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKA 380 (742)
Q Consensus 325 ~~l~~~nl~~~y~~--~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~-------------------maq~ 380 (742)
+.++++||+|+|++ +++ ++||++++| +.++|+||||||||||+|++ |+..+ +.+.
T Consensus 462 ~~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G-~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~ 540 (694)
T TIGR03375 462 GEIEFRNVSFAYPGQETPALDNVSLTIRPG-EKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRN 540 (694)
T ss_pred ceEEEEEEEEEeCCCCccceeeeeEEECCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhc
Confidence 57999999999964 334 999999999 99999999999999999999 33321 1122
Q ss_pred ceeecCCCCC-CchHHHH---------------HHHHcCCc-----------cccccccccchHHHH-HHHHHHHhcCCC
Q 004609 381 GLYLPAKNHP-RLPWFDL---------------ILADIGDH-----------QSLEQNLSTFSGHIS-RIVDILELVSRE 432 (742)
Q Consensus 381 G~~vPa~~~~-~i~~~d~---------------il~~ig~~-----------~~~~~~lstfSgg~k-rl~~~~~l~~~~ 432 (742)
..++|++... .-++.++ .+...|.. ..+......|||||+ |++++++++.+|
T Consensus 541 i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p 620 (694)
T TIGR03375 541 IGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDP 620 (694)
T ss_pred cEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 3345554310 0011122 22223322 233445578999999 999999999999
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcccccceecceEEEe
Q 004609 433 SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 433 ~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~l~~~a~~~~~i~~g~~~~~ 494 (742)
+++||||||+++|+.....+.+++.+ +.+ +.|+|++||+.+....||+++.+++|++...
T Consensus 621 ~iliLDE~Ts~LD~~te~~i~~~l~~-~~~-~~T~iiItHrl~~~~~~D~iivl~~G~i~e~ 680 (694)
T TIGR03375 621 PILLLDEPTSAMDNRSEERFKDRLKR-WLA-GKTLVLVTHRTSLLDLVDRIIVMDNGRIVAD 680 (694)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHH-HhC-CCEEEEEecCHHHHHhCCEEEEEeCCEEEee
Confidence 99999999999999999999986654 333 6899999999998889999999999988643
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.3e-21 Score=188.29 Aligned_cols=137 Identities=23% Similarity=0.285 Sum_probs=110.6
Q ss_pred EEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhHHhhhhhhhhceeecCCCCC---------------
Q 004609 328 TVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHP--------------- 390 (742)
Q Consensus 328 ~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~lGli~~maq~G~~vPa~~~~--------------- 390 (742)
..+|++...+..++ ++||++.+| +++.|+||||+|||||||+| +|+.-|..|.+
T Consensus 4 ~a~~L~~~R~e~~lf~~L~f~l~~G-e~~~i~G~NG~GKTtLLRil--------aGLl~p~~G~v~~~~~~i~~~~~~~~ 74 (209)
T COG4133 4 EAENLSCERGERTLFSDLSFTLNAG-EALQITGPNGAGKTTLLRIL--------AGLLRPDAGEVYWQGEPIQNVRESYH 74 (209)
T ss_pred hhhhhhhccCcceeecceeEEEcCC-CEEEEECCCCCcHHHHHHHH--------HcccCCCCCeEEecCCCCccchhhHH
Confidence 34566666666666 999999999 99999999999999999999 56555555521
Q ss_pred --------------CchHHH------------------HHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEEEE
Q 004609 391 --------------RLPWFD------------------LILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLI 437 (742)
Q Consensus 391 --------------~i~~~d------------------~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLL 437 (742)
.++.++ +.++.+|+.+..+-++..||.||+ |+++++..++.++|.||
T Consensus 75 ~~l~yLGH~~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiL 154 (209)
T COG4133 75 QALLYLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWIL 154 (209)
T ss_pred HHHHHhhccccccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceee
Confidence 112222 346677888888999999999999 89999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCh
Q 004609 438 DEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYA 474 (742)
Q Consensus 438 DEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~ 474 (742)
|||++++|....+.+.. ++..-..+|+.||+|||..
T Consensus 155 DEP~taLDk~g~a~l~~-l~~~H~~~GGiVllttHq~ 190 (209)
T COG4133 155 DEPFTALDKEGVALLTA-LMAAHAAQGGIVLLTTHQP 190 (209)
T ss_pred cCcccccCHHHHHHHHH-HHHHHhcCCCEEEEecCCc
Confidence 99999999988887777 5555556689999999984
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.2e-21 Score=222.96 Aligned_cols=166 Identities=13% Similarity=0.143 Sum_probs=127.2
Q ss_pred CcEEEeeeeeecCC--cee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhh-------------------hhhh
Q 004609 325 SEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKA 380 (742)
Q Consensus 325 ~~l~~~nl~~~y~~--~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~-------------------maq~ 380 (742)
+.+.++||+++|++ .++ ++|+++++| +.++|+||||+|||||+|++ |+..+ +.+.
T Consensus 329 ~~i~~~~v~f~y~~~~~~il~~inl~i~~G-~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~ 407 (571)
T TIGR02203 329 GDVEFRNVTFRYPGRDRPALDSISLVIEPG-ETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQ 407 (571)
T ss_pred CeEEEEEEEEEcCCCCCccccCeeEEecCC-CEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhh
Confidence 46899999999964 444 999999999 99999999999999999999 55532 1223
Q ss_pred ceeecCCCCCC-chH----------------HHHHHHHcCCcc-----------ccccccccchHHHH-HHHHHHHhcCC
Q 004609 381 GLYLPAKNHPR-LPW----------------FDLILADIGDHQ-----------SLEQNLSTFSGHIS-RIVDILELVSR 431 (742)
Q Consensus 381 G~~vPa~~~~~-i~~----------------~d~il~~ig~~~-----------~~~~~lstfSgg~k-rl~~~~~l~~~ 431 (742)
-.|+|+++... -++ +.+++...|+.+ .+...-..|||||+ |++++++++.+
T Consensus 408 i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~ 487 (571)
T TIGR02203 408 VALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKD 487 (571)
T ss_pred ceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcC
Confidence 34666664100 011 222333334332 23334467999999 99999999999
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcccccceecceEEE
Q 004609 432 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEF 493 (742)
Q Consensus 432 ~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~l~~~a~~~~~i~~g~~~~ 493 (742)
|+++||||||+++|+.....|...+.+ +. .+.|+|++||+..+...||+++.+++|++..
T Consensus 488 ~~illLDEpts~LD~~~~~~i~~~L~~-~~-~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~ 547 (571)
T TIGR02203 488 APILILDEATSALDNESERLVQAALER-LM-QGRTTLVIAHRLSTIEKADRIVVMDDGRIVE 547 (571)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHH-Hh-CCCEEEEEehhhHHHHhCCEEEEEeCCEEEe
Confidence 999999999999999999999886654 33 3689999999999889999999999988753
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.8e-21 Score=223.62 Aligned_cols=166 Identities=16% Similarity=0.175 Sum_probs=126.3
Q ss_pred CcEEEeeeeeecCC-cee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhh-------------------hhhhc
Q 004609 325 SEMTVGSLSKGISD-FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKAG 381 (742)
Q Consensus 325 ~~l~~~nl~~~y~~-~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~-------------------maq~G 381 (742)
+.++++|+++.|++ .++ ++||++++| +.++|+||||||||||+|++ |+..+ +.+..
T Consensus 339 ~~i~~~~v~f~y~~~~~il~~i~l~i~~G-e~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i 417 (592)
T PRK10790 339 GRIDIDNVSFAYRDDNLVLQNINLSVPSR-GFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGV 417 (592)
T ss_pred CeEEEEEEEEEeCCCCceeeceeEEEcCC-CEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhhe
Confidence 46899999999964 445 999999999 99999999999999999999 44322 12223
Q ss_pred eeecCCCCCCc--hHH--------------HHHHHHcCCcc-----------ccccccccchHHHH-HHHHHHHhcCCCc
Q 004609 382 LYLPAKNHPRL--PWF--------------DLILADIGDHQ-----------SLEQNLSTFSGHIS-RIVDILELVSRES 433 (742)
Q Consensus 382 ~~vPa~~~~~i--~~~--------------d~il~~ig~~~-----------~~~~~lstfSgg~k-rl~~~~~l~~~~~ 433 (742)
.|+|++.. -+ ++. .+++...|..+ .+...-..|||||+ |++++++++.+|+
T Consensus 418 ~~v~Q~~~-lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~ 496 (592)
T PRK10790 418 AMVQQDPV-VLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQ 496 (592)
T ss_pred EEEccCCc-cccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCC
Confidence 35555431 11 111 12233334333 23344567999999 9999999999999
Q ss_pred EEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcccccceecceEEEe
Q 004609 434 LVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 434 LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~l~~~a~~~~~i~~g~~~~~ 494 (742)
++||||||+++|+.....+.+.+.+ +.+ ++|+|++||+.+....+|+++.+++|++...
T Consensus 497 illlDEpts~LD~~t~~~i~~~l~~-~~~-~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~ 555 (592)
T PRK10790 497 ILILDEATANIDSGTEQAIQQALAA-VRE-HTTLVVIAHRLSTIVEADTILVLHRGQAVEQ 555 (592)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHH-HhC-CCEEEEEecchHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999886654 333 5899999999998888999999999988643
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-20 Score=208.76 Aligned_cols=167 Identities=16% Similarity=0.152 Sum_probs=135.4
Q ss_pred CCcEEEeeeeeecCCce-e--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhh------------------hhhhc
Q 004609 324 NSEMTVGSLSKGISDFP-V--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL------------------MSKAG 381 (742)
Q Consensus 324 ~~~l~~~nl~~~y~~~~-v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~------------------maq~G 381 (742)
++.+.++||++.|+++. | ++||++++| +.++|+|+|||||||+||++ ....+ +.++.
T Consensus 349 ~~~I~F~dV~f~y~~k~~iL~gvsf~I~kG-ekVaIvG~nGsGKSTilr~LlrF~d~sG~I~IdG~dik~~~~~SlR~~I 427 (591)
T KOG0057|consen 349 GGSIEFDDVHFSYGPKRKVLKGVSFTIPKG-EKVAIVGSNGSGKSTILRLLLRFFDYSGSILIDGQDIKEVSLESLRQSI 427 (591)
T ss_pred CCcEEEEeeEEEeCCCCceecceeEEecCC-CEEEEECCCCCCHHHHHHHHHHHhccCCcEEECCeeHhhhChHHhhhhe
Confidence 36799999999998866 6 999999999 99999999999999999999 33321 56778
Q ss_pred eeecCCCCCCc--hH------------HH---HHHHHcCCcccc-----------ccccccchHHHH-HHHHHHHhcCCC
Q 004609 382 LYLPAKNHPRL--PW------------FD---LILADIGDHQSL-----------EQNLSTFSGHIS-RIVDILELVSRE 432 (742)
Q Consensus 382 ~~vPa~~~~~i--~~------------~d---~il~~ig~~~~~-----------~~~lstfSgg~k-rl~~~~~l~~~~ 432 (742)
.+|||+.. -+ ++ ++ ++..+.|+.|.+ ...--.|||||+ |++++++++.+|
T Consensus 428 g~VPQd~~-LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda 506 (591)
T KOG0057|consen 428 GVVPQDSV-LFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDA 506 (591)
T ss_pred eEeCCccc-ccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCC
Confidence 89999872 11 11 11 223344444433 334456899999 899999999999
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcccccceecceEEEe
Q 004609 433 SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 433 ~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~l~~~a~~~~~i~~g~~~~~ 494 (742)
+++++||||++||...-..|...+.. ...+.|+|++-|++.+...+|+++.++||++...
T Consensus 507 ~Il~~DEaTS~LD~~TE~~i~~~i~~--~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~ 566 (591)
T KOG0057|consen 507 PILLLDEATSALDSETEREILDMIMD--VMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEY 566 (591)
T ss_pred CeEEecCcccccchhhHHHHHHHHHH--hcCCCeEEEEEecchhHhcCCEEEEEECCeeEEe
Confidence 99999999999999999999997777 3347899999999999999999999999998644
|
|
| >PRK10535 macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.9e-21 Score=223.91 Aligned_cols=167 Identities=20% Similarity=0.279 Sum_probs=134.7
Q ss_pred cEEEeeeeeecCC----cee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhh-------------------h--
Q 004609 326 EMTVGSLSKGISD----FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------M-- 377 (742)
Q Consensus 326 ~l~~~nl~~~y~~----~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~-------------------m-- 377 (742)
.++++|+++.|++ ..+ ++||++.+| ++++|+||||+|||||||++ |+..+ +
T Consensus 4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~G-e~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~ 82 (648)
T PRK10535 4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAG-EMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQ 82 (648)
T ss_pred EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHH
Confidence 3678999999953 234 999999999 99999999999999999999 55432 0
Q ss_pred --hhhceeecCCCCC--CchHH---------------------HHHHHHcCCccccccccccchHHHH-HHHHHHHhcCC
Q 004609 378 --SKAGLYLPAKNHP--RLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSR 431 (742)
Q Consensus 378 --aq~G~~vPa~~~~--~i~~~---------------------d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~ 431 (742)
.+...|+|+.... .++.. ..++..+|+.+.+++.+++||+||+ |+.++++++.+
T Consensus 83 ~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~~ 162 (648)
T PRK10535 83 LRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNG 162 (648)
T ss_pred HHhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 1223466665421 11212 2245567777788899999999999 89999999999
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcccccceecceEEEe
Q 004609 432 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 432 ~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~l~~~a~~~~~i~~g~~~~~ 494 (742)
|+++||||||+|||+.....+.. +++.+++.+.++|++||+.++...|++...+.+|++...
T Consensus 163 P~lLllDEP~~gLD~~s~~~l~~-ll~~l~~~g~tilivsH~~~~~~~~d~i~~l~~G~i~~~ 224 (648)
T PRK10535 163 GQVILADEPTGALDSHSGEEVMA-ILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRN 224 (648)
T ss_pred CCEEEEECCCCCCCHHHHHHHHH-HHHHHHhcCCEEEEECCCHHHHHhCCEEEEEECCEEEee
Confidence 99999999999999999999998 555666668999999999997778999999999998755
|
|
| >cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-20 Score=195.00 Aligned_cols=150 Identities=24% Similarity=0.310 Sum_probs=109.7
Q ss_pred cccccccCCceEEEEEeCCCCCcchHH-hhH---Hhhhhh--------hhh-ceeecC--------------CC----CC
Q 004609 342 PIDIKVECETRVVVITGPNTGGKTASM-KTL---GLASLM--------SKA-GLYLPA--------------KN----HP 390 (742)
Q Consensus 342 ~i~l~l~~g~~~~~ItGpNGsGKSTlL-K~l---Gli~~m--------aq~-G~~vPa--------------~~----~~ 390 (742)
++||++++| ++++|+||||||||||+ .++ |-..+- ... +.+.|. .. ..
T Consensus 13 ~vsl~i~~G-e~~~l~G~sGsGKSTL~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (226)
T cd03270 13 NVDVDIPRN-KLVVITGVSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAIAIDQKTTSRNP 91 (226)
T ss_pred cceeecCCC-cEEEEEcCCCCCHHHHHHHHHHHHHHHHHhhcccchhhhhhcccCccccccccCCCceEEecCCCCCCCC
Confidence 999999999 99999999999999996 333 111100 000 111111 11 01
Q ss_pred --Cch-------HH------------HHHHHHcCCcc-ccccccccchHHHH-HHHHHHHhcCCC--cEEEEcCCCCCCC
Q 004609 391 --RLP-------WF------------DLILADIGDHQ-SLEQNLSTFSGHIS-RIVDILELVSRE--SLVLIDEIGSGTD 445 (742)
Q Consensus 391 --~i~-------~~------------d~il~~ig~~~-~~~~~lstfSgg~k-rl~~~~~l~~~~--~LlLLDEp~~glD 445 (742)
.++ ++ ..++..+++.+ ..++++++|||||+ |+.++++++.+| +++||||||+|+|
T Consensus 92 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~~~llllDEPt~gLD 171 (226)
T cd03270 92 RSTVGTVTEIYDYLRLLFARVGIRERLGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLH 171 (226)
T ss_pred CccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCC
Confidence 111 11 12344556655 47899999999999 899999999997 5999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcccccce------ecceEEE
Q 004609 446 PSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRF------ENAATEF 493 (742)
Q Consensus 446 p~~~~aL~~all~~l~~~~~~vlitTH~~~l~~~a~~~~~i------~~g~~~~ 493 (742)
+.....+... +..+.+.|.++|++||+.+...+|+++..+ .+|.+..
T Consensus 172 ~~~~~~l~~~-l~~~~~~g~tii~itH~~~~~~~~d~i~~l~~~~~~~~G~iv~ 224 (226)
T cd03270 172 PRDNDRLIET-LKRLRDLGNTVLVVEHDEDTIRAADHVIDIGPGAGVHGGEIVA 224 (226)
T ss_pred HHHHHHHHHH-HHHHHhCCCEEEEEEeCHHHHHhCCEEEEeCCCccccCCEEEe
Confidence 9999999985 455666788999999999877799999999 7776654
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.6e-21 Score=227.05 Aligned_cols=166 Identities=17% Similarity=0.198 Sum_probs=127.8
Q ss_pred CcEEEeeeeeecCC-cee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhh-------------------hhhhc
Q 004609 325 SEMTVGSLSKGISD-FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKAG 381 (742)
Q Consensus 325 ~~l~~~nl~~~y~~-~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~-------------------maq~G 381 (742)
+.++++||+|+|++ +++ ++|+++++| +.++|+||||||||||+|++ |+..+ +.+.-
T Consensus 472 ~~I~~~~vsf~y~~~~~iL~~isl~i~~G-~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i 550 (708)
T TIGR01193 472 GDIVINDVSYSYGYGSNILSDISLTIKMN-SKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFI 550 (708)
T ss_pred CcEEEEEEEEEcCCCCcceeceeEEECCC-CEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHhe
Confidence 57899999999963 445 999999999 99999999999999999999 55432 12233
Q ss_pred eeecCCCCC-CchHHH----------------HHHHHcCC-----------ccccccccccchHHHH-HHHHHHHhcCCC
Q 004609 382 LYLPAKNHP-RLPWFD----------------LILADIGD-----------HQSLEQNLSTFSGHIS-RIVDILELVSRE 432 (742)
Q Consensus 382 ~~vPa~~~~-~i~~~d----------------~il~~ig~-----------~~~~~~~lstfSgg~k-rl~~~~~l~~~~ 432 (742)
.|+|++... .-++.+ +.+...|. +..+......|||||+ |++++++++.+|
T Consensus 551 ~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p 630 (708)
T TIGR01193 551 NYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDS 630 (708)
T ss_pred EEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCC
Confidence 466665410 001111 22222232 2234455678999999 999999999999
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcccccceecceEEEe
Q 004609 433 SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 433 ~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~l~~~a~~~~~i~~g~~~~~ 494 (742)
+++||||||+++|+.....+.+++.+ + .+.|+|++||+.+....+|+++.+++|.+...
T Consensus 631 ~iliLDE~Ts~LD~~te~~i~~~L~~-~--~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~ 689 (708)
T TIGR01193 631 KVLILDESTSNLDTITEKKIVNNLLN-L--QDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQ 689 (708)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHH-h--cCCEEEEEecchHHHHcCCEEEEEECCEEEEE
Confidence 99999999999999999999886664 3 36899999999998888999999999988643
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.8e-21 Score=197.21 Aligned_cols=158 Identities=18% Similarity=0.131 Sum_probs=131.9
Q ss_pred cEEEeeeeeecCC----------cee-cccccccCCceEEEEEeCCCCCcchHHhhHHhhhhhhhhceeecCCCCCCch-
Q 004609 326 EMTVGSLSKGISD----------FPV-PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLP- 393 (742)
Q Consensus 326 ~l~~~nl~~~y~~----------~~v-~i~l~l~~g~~~~~ItGpNGsGKSTlLK~lGli~~maq~G~~vPa~~~~~i~- 393 (742)
.++++||++.|.. +.+ +|||++.+| ++++|+|.+||||||+-|+| .|+.-|++|...+.
T Consensus 4 ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~g-e~~glVGESG~GKSTlgr~i--------~~L~~pt~G~i~f~g 74 (268)
T COG4608 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEG-ETLGLVGESGCGKSTLGRLI--------LGLEEPTSGEILFEG 74 (268)
T ss_pred eEEEeccEEEEecccccCcccceEEecceeEEEcCC-CEEEEEecCCCCHHHHHHHH--------HcCcCCCCceEEEcC
Confidence 4567788887742 123 899999999 99999999999999999999 77777777743221
Q ss_pred -------------HHHHHHHHcCCcc-ccccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHH
Q 004609 394 -------------WFDLILADIGDHQ-SLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQ 458 (742)
Q Consensus 394 -------------~~d~il~~ig~~~-~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLDEp~~glDp~~~~aL~~all~ 458 (742)
.+..++..+|... .+++++..|||||+ |+.+|++++.+|+++++|||++.||...++.+.. ++.
T Consensus 75 ~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIln-LL~ 153 (268)
T COG4608 75 KDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILN-LLK 153 (268)
T ss_pred cchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHH-HHH
Confidence 2456788888754 78999999999999 9999999999999999999999999999999998 555
Q ss_pred HHhc-CCcEEEEEecChhh-hhhcccccceecceEEE
Q 004609 459 YLRD-RVGLAVVTTHYADL-SCLKDKDTRFENAATEF 493 (742)
Q Consensus 459 ~l~~-~~~~vlitTH~~~l-~~~a~~~~~i~~g~~~~ 493 (742)
.+.+ .|.+.+|+|||+.. ..++|++..|..|.++-
T Consensus 154 dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE 190 (268)
T COG4608 154 DLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVE 190 (268)
T ss_pred HHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeE
Confidence 5654 58899999999984 56899999999997753
|
|
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.4e-21 Score=220.86 Aligned_cols=167 Identities=11% Similarity=0.102 Sum_probs=125.1
Q ss_pred CcEEEeeeeeecCC--cee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhh-------------------hhhh
Q 004609 325 SEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKA 380 (742)
Q Consensus 325 ~~l~~~nl~~~y~~--~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~-------------------maq~ 380 (742)
+.+.++|++++|++ .++ ++|+++++| +.++|+||||||||||++++ |+..+ +.+.
T Consensus 312 ~~I~~~~v~~~y~~~~~~~l~~i~~~i~~G-~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~ 390 (569)
T PRK10789 312 GELDVNIRQFTYPQTDHPALENVNFTLKPG-QMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSR 390 (569)
T ss_pred CcEEEEEEEEECCCCCCccccCeeEEECCC-CEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhh
Confidence 46889999999964 334 999999999 99999999999999999999 44422 1122
Q ss_pred ceeecCCCCC-CchHHHH---------------HHHHcCCc-----------cccccccccchHHHH-HHHHHHHhcCCC
Q 004609 381 GLYLPAKNHP-RLPWFDL---------------ILADIGDH-----------QSLEQNLSTFSGHIS-RIVDILELVSRE 432 (742)
Q Consensus 381 G~~vPa~~~~-~i~~~d~---------------il~~ig~~-----------~~~~~~lstfSgg~k-rl~~~~~l~~~~ 432 (742)
..++|++... .-++.++ .+...+.. ..+......|||||+ |++++++++.+|
T Consensus 391 i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~ 470 (569)
T PRK10789 391 LAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNA 470 (569)
T ss_pred eEEEccCCeeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCC
Confidence 2355554310 0011222 22222322 223345678999999 999999999999
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcccccceecceEEEe
Q 004609 433 SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 433 ~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~l~~~a~~~~~i~~g~~~~~ 494 (742)
+++||||||+|+|+.....+...+.+ +. .+.|+|++||+.+....+|+++.+++|++...
T Consensus 471 ~illlDEpts~LD~~~~~~i~~~l~~-~~-~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~ 530 (569)
T PRK10789 471 EILILDDALSAVDGRTEHQILHNLRQ-WG-EGRTVIISAHRLSALTEASEILVMQHGHIAQR 530 (569)
T ss_pred CEEEEECccccCCHHHHHHHHHHHHH-Hh-CCCEEEEEecchhHHHcCCEEEEEeCCEEEEe
Confidence 99999999999999999999986554 43 47899999999987778999999999988644
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.7e-21 Score=197.41 Aligned_cols=143 Identities=21% Similarity=0.233 Sum_probs=121.7
Q ss_pred cccccccCCceEEEEEeCCCCCcchHHhhHHhhhhhhhhceeecCCCC-------------------------------C
Q 004609 342 PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNH-------------------------------P 390 (742)
Q Consensus 342 ~i~l~l~~g~~~~~ItGpNGsGKSTlLK~lGli~~maq~G~~vPa~~~-------------------------------~ 390 (742)
++||+++.| ++++|.|-+|||||||+|++ .++..|..|. .
T Consensus 46 ~~sl~v~~G-eIfViMGLSGSGKSTLvR~~--------NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~Fa 116 (386)
T COG4175 46 DASLDVEEG-EIFVIMGLSGSGKSTLVRLL--------NRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFA 116 (386)
T ss_pred cceeeecCC-eEEEEEecCCCCHHHHHHHH--------hccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhc
Confidence 899999999 99999999999999999999 3333333331 1
Q ss_pred CchH------------------------HHHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCC
Q 004609 391 RLPW------------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTD 445 (742)
Q Consensus 391 ~i~~------------------------~d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLDEp~~glD 445 (742)
-+|+ ....+..+|+.++.++++..|||||+ |+.++++++++|+++|+|||++.||
T Consensus 117 LlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALD 196 (386)
T COG4175 117 LLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALD 196 (386)
T ss_pred cccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcC
Confidence 1111 22457788999999999999999999 9999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEE
Q 004609 446 PSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF 493 (742)
Q Consensus 446 p~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~ 493 (742)
|--+..+.+-+++.-.+.+.|++|+|||++ -..+.+++..+.+|.+.-
T Consensus 197 PLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaimkdG~ivQ 245 (386)
T COG4175 197 PLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMKDGEIVQ 245 (386)
T ss_pred hHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEecCCeEEE
Confidence 999999999888877777899999999987 457899999999998763
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.2e-21 Score=225.46 Aligned_cols=166 Identities=17% Similarity=0.213 Sum_probs=130.2
Q ss_pred EEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh-----------------hhhceeecCC
Q 004609 328 TVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------SKAGLYLPAK 387 (742)
Q Consensus 328 ~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m-----------------aq~G~~vPa~ 387 (742)
.++|+++.|+++.+ ++|+++.+| ++++|+|||||||||||++| |+...- .+...|+|++
T Consensus 70 ~~~~l~~~~~~~~iL~~vs~~i~~G-e~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~ 148 (659)
T PLN03211 70 KISDETRQIQERTILNGVTGMASPG-EILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQD 148 (659)
T ss_pred ccccccccCCCCeeeeCCEEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEECcc
Confidence 35678889987766 999999999 99999999999999999999 554320 1123467765
Q ss_pred CCC--CchH------------------------HHHHHHHcCCcccc-----ccccccchHHHH-HHHHHHHhcCCCcEE
Q 004609 388 NHP--RLPW------------------------FDLILADIGDHQSL-----EQNLSTFSGHIS-RIVDILELVSRESLV 435 (742)
Q Consensus 388 ~~~--~i~~------------------------~d~il~~ig~~~~~-----~~~lstfSgg~k-rl~~~~~l~~~~~Ll 435 (742)
... .+++ ++.++..+|+.+.. ++..+.|||||+ |+.++++++.+|+++
T Consensus 149 ~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iL 228 (659)
T PLN03211 149 DILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 228 (659)
T ss_pred cccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEE
Confidence 411 1122 23345566665433 345778999999 999999999999999
Q ss_pred EEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh--hhhhcccccceecceEEEec
Q 004609 436 LIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD--LSCLKDKDTRFENAATEFSL 495 (742)
Q Consensus 436 LLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~--l~~~a~~~~~i~~g~~~~~~ 495 (742)
||||||+|||+.....+.. ++..+.+.|.|+|++||+.. +..++|++..+.+|++.+..
T Consensus 229 lLDEPtsgLD~~~~~~l~~-~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G 289 (659)
T PLN03211 229 ILDEPTSGLDATAAYRLVL-TLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFG 289 (659)
T ss_pred EEeCCCCCcCHHHHHHHHH-HHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEEEC
Confidence 9999999999999999999 55556667899999999975 57889999999999987763
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.1e-20 Score=220.59 Aligned_cols=167 Identities=14% Similarity=0.163 Sum_probs=126.8
Q ss_pred CcEEEeeeeeecCC---cee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhh-------------------hhh
Q 004609 325 SEMTVGSLSKGISD---FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSK 379 (742)
Q Consensus 325 ~~l~~~nl~~~y~~---~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~-------------------maq 379 (742)
+.++++||+++|++ +++ ++||++++| +.++|+||||||||||+|++ |+..+ +.+
T Consensus 336 ~~i~~~~v~f~y~~~~~~~iL~~inl~i~~G-e~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~ 414 (576)
T TIGR02204 336 GEIEFEQVNFAYPARPDQPALDGLNLTVRPG-ETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRA 414 (576)
T ss_pred ceEEEEEEEEECCCCCCCccccceeEEecCC-CEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHH
Confidence 46899999999964 344 999999999 99999999999999999999 55432 112
Q ss_pred hceeecCCCCC-CchHHHH---------------HHHHcC-----------CccccccccccchHHHH-HHHHHHHhcCC
Q 004609 380 AGLYLPAKNHP-RLPWFDL---------------ILADIG-----------DHQSLEQNLSTFSGHIS-RIVDILELVSR 431 (742)
Q Consensus 380 ~G~~vPa~~~~-~i~~~d~---------------il~~ig-----------~~~~~~~~lstfSgg~k-rl~~~~~l~~~ 431 (742)
...|+|++... .-++.++ .+...| ++..+......|||||+ |++++++++.+
T Consensus 415 ~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~ 494 (576)
T TIGR02204 415 RMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKD 494 (576)
T ss_pred hceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhC
Confidence 23466665410 0011122 222222 23334455678999999 99999999999
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcccccceecceEEEe
Q 004609 432 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 432 ~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~l~~~a~~~~~i~~g~~~~~ 494 (742)
|+++||||||+++|+.....+.+.+.+ +.+ +.|+|++||+.+....+|+.+.+.+|.+...
T Consensus 495 ~~ililDEpts~lD~~~~~~i~~~l~~-~~~-~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~ 555 (576)
T TIGR02204 495 APILLLDEATSALDAESEQLVQQALET-LMK-GRTTLIIAHRLATVLKADRIVVMDQGRIVAQ 555 (576)
T ss_pred CCeEEEeCcccccCHHHHHHHHHHHHH-HhC-CCEEEEEecchHHHHhCCEEEEEECCEEEee
Confidence 999999999999999999888885554 443 6899999999998888999999999987643
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.4e-20 Score=224.32 Aligned_cols=167 Identities=17% Similarity=0.153 Sum_probs=127.5
Q ss_pred CcEEEeeeeeecCC--cee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhh-------------------hhhh
Q 004609 325 SEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKA 380 (742)
Q Consensus 325 ~~l~~~nl~~~y~~--~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~-------------------maq~ 380 (742)
+.++++||+++|++ +.+ ++||++++| +.++|+||||||||||+|++ |+..+ +.+.
T Consensus 454 ~~i~~~~vsf~y~~~~~~il~~i~l~i~~G-~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~ 532 (694)
T TIGR01846 454 GAITFENIRFRYAPDSPEVLSNLNLDIKPG-EFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQ 532 (694)
T ss_pred CeEEEEEEEEEcCCCCccccccceEEECCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHh
Confidence 57899999999953 334 999999999 99999999999999999999 44422 1222
Q ss_pred ceeecCCCCC-CchHHH---------------HHHHHcC-----------CccccccccccchHHHH-HHHHHHHhcCCC
Q 004609 381 GLYLPAKNHP-RLPWFD---------------LILADIG-----------DHQSLEQNLSTFSGHIS-RIVDILELVSRE 432 (742)
Q Consensus 381 G~~vPa~~~~-~i~~~d---------------~il~~ig-----------~~~~~~~~lstfSgg~k-rl~~~~~l~~~~ 432 (742)
..++|++... .-++.+ +.+...+ .+..+......|||||+ |++++++++.+|
T Consensus 533 i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~ 612 (694)
T TIGR01846 533 MGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNP 612 (694)
T ss_pred CeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCC
Confidence 3455555310 001111 1222222 33344556778999999 999999999999
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcccccceecceEEEe
Q 004609 433 SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 433 ~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~l~~~a~~~~~i~~g~~~~~ 494 (742)
+++||||||+++|+.....+.+.+.+. . .+.|+|++||+.+....+|++..+++|++...
T Consensus 613 ~ililDEpts~LD~~~~~~i~~~l~~~-~-~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~ 672 (694)
T TIGR01846 613 RILIFDEATSALDYESEALIMRNMREI-C-RGRTVIIIAHRLSTVRACDRIIVLEKGQIAES 672 (694)
T ss_pred CEEEEECCCcCCCHHHHHHHHHHHHHH-h-CCCEEEEEeCChHHHHhCCEEEEEeCCEEEEe
Confidence 999999999999999999999866554 3 46899999999987778999999999988754
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-20 Score=223.11 Aligned_cols=158 Identities=15% Similarity=0.159 Sum_probs=121.2
Q ss_pred CcEEEeeeeeecC-Ccee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh--------hhhceeecCCCCCC-
Q 004609 325 SEMTVGSLSKGIS-DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------SKAGLYLPAKNHPR- 391 (742)
Q Consensus 325 ~~l~~~nl~~~y~-~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m--------aq~G~~vPa~~~~~- 391 (742)
+.++++||++.|+ +..+ ++||++++| ++++|+||||||||||+|++ |+..+- .+...++|++....
T Consensus 450 ~~i~~~nv~~~~~~~~~il~~isl~i~~G-e~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~~~~i~~v~Q~~~l~~ 528 (659)
T TIGR00954 450 NGIKFENIPLVTPNGDVLIESLSFEVPSG-NHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQRPYMTL 528 (659)
T ss_pred CeEEEEeeEEECCCCCeeeecceEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecCCCcEEEECCCCCCCC
Confidence 5689999999995 4344 999999999 99999999999999999999 554321 11124667664100
Q ss_pred chH----------------------HHHHHHHcCCccccccc---------cccchHHHH-HHHHHHHhcCCCcEEEEcC
Q 004609 392 LPW----------------------FDLILADIGDHQSLEQN---------LSTFSGHIS-RIVDILELVSRESLVLIDE 439 (742)
Q Consensus 392 i~~----------------------~d~il~~ig~~~~~~~~---------lstfSgg~k-rl~~~~~l~~~~~LlLLDE 439 (742)
-++ +..++..+|+.+.++++ ..+|||||+ |++++++++.+|+++||||
T Consensus 529 ~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLDE 608 (659)
T TIGR00954 529 GTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDE 608 (659)
T ss_pred cCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 011 22345555665555443 379999999 9999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhccccccee
Q 004609 440 IGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFE 487 (742)
Q Consensus 440 p~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~l~~~a~~~~~i~ 487 (742)
||+|||+.....+.+.+.+ .+.|+|++||+.++..++|++..+.
T Consensus 609 pts~LD~~~~~~l~~~l~~----~~~tvI~isH~~~~~~~~d~il~l~ 652 (659)
T TIGR00954 609 CTSAVSVDVEGYMYRLCRE----FGITLFSVSHRKSLWKYHEYLLYMD 652 (659)
T ss_pred CccCCCHHHHHHHHHHHHH----cCCEEEEEeCchHHHHhCCEEEEEe
Confidence 9999999998888774433 4889999999999888899887765
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.4e-20 Score=224.78 Aligned_cols=165 Identities=16% Similarity=0.141 Sum_probs=124.2
Q ss_pred CcEEEeeeeeecCC---cee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhh-------------------hhh
Q 004609 325 SEMTVGSLSKGISD---FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSK 379 (742)
Q Consensus 325 ~~l~~~nl~~~y~~---~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~-------------------maq 379 (742)
+.++++||+++|++ +++ ++||++++| +.++|+|||||||||++|+| |+..+ +.+
T Consensus 477 ~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~G-e~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~ 555 (711)
T TIGR00958 477 GLIEFQDVSFSYPNRPDVPVLKGLTFTLHPG-EVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHR 555 (711)
T ss_pred CeEEEEEEEEECCCCCCCccccCceEEEcCC-CEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHh
Confidence 57999999999964 345 999999999 99999999999999999999 44432 122
Q ss_pred hceeecCCCCC-CchH---------------HHHHHHHcCCc-----------cccccccccchHHHH-HHHHHHHhcCC
Q 004609 380 AGLYLPAKNHP-RLPW---------------FDLILADIGDH-----------QSLEQNLSTFSGHIS-RIVDILELVSR 431 (742)
Q Consensus 380 ~G~~vPa~~~~-~i~~---------------~d~il~~ig~~-----------~~~~~~lstfSgg~k-rl~~~~~l~~~ 431 (742)
...++|++... .-++ +.+++...+.. ..+...-..|||||+ |++++++++.+
T Consensus 556 ~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~ 635 (711)
T TIGR00958 556 QVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRK 635 (711)
T ss_pred hceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcC
Confidence 33456665410 0011 12223333332 233344567999999 99999999999
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcccccceecceEEEe
Q 004609 432 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 432 ~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~l~~~a~~~~~i~~g~~~~~ 494 (742)
|+++||||||+++|+.....+.+ .....+.|+|++||..+....+|+++.+++|++...
T Consensus 636 p~ILILDEpTSaLD~~te~~i~~----~~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~ 694 (711)
T TIGR00958 636 PRVLILDEATSALDAECEQLLQE----SRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEM 694 (711)
T ss_pred CCEEEEEccccccCHHHHHHHHH----hhccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999988777765 122347899999999998888999999999988643
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1e-19 Score=200.82 Aligned_cols=158 Identities=22% Similarity=0.312 Sum_probs=124.1
Q ss_pred EEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhHHhhhhhhhhceeecCCCCCCchH----------
Q 004609 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPW---------- 394 (742)
Q Consensus 327 l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~lGli~~maq~G~~vPa~~~~~i~~---------- 394 (742)
+.+.|+++.|.+..+ +..|++.+| +.++|+|||||||||+|++| .|..+|......+-.
T Consensus 76 vk~~sls~s~~g~~l~kd~~~El~~g-~rygLiG~nG~Gkst~L~~i--------~~~e~P~p~~~d~y~ls~e~~ps~~ 146 (614)
T KOG0927|consen 76 VKIESLSLSFHGVELIKDVTLELNRG-RRYGLIGPNGSGKSTFLRAI--------AGREVPIPEHIDFYLLSREIEPSEK 146 (614)
T ss_pred ceeeeeeeccCCceeeeeeeEEecCC-ceEEEEcCCCCcHhHHHHHH--------hcCCCCCCcccchhhhcccCCCchH
Confidence 568899999977665 999999999 99999999999999999999 677777654211100
Q ss_pred -----------------------------------HH-------------------HHHHHcC-CccccccccccchHHH
Q 004609 395 -----------------------------------FD-------------------LILADIG-DHQSLEQNLSTFSGHI 419 (742)
Q Consensus 395 -----------------------------------~d-------------------~il~~ig-~~~~~~~~lstfSgg~ 419 (742)
++ +++..+| ......+.+..||||+
T Consensus 147 ~av~~v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGw 226 (614)
T KOG0927|consen 147 QAVQAVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGW 226 (614)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchH
Confidence 00 1122222 2245568889999999
Q ss_pred H-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCc-EEEEEecChh-hhhhcccccceecceEEEecC
Q 004609 420 S-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVG-LAVVTTHYAD-LSCLKDKDTRFENAATEFSLE 496 (742)
Q Consensus 420 k-rl~~~~~l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~-~vlitTH~~~-l~~~a~~~~~i~~g~~~~~~~ 496 (742)
+ |+++++++..+|+||||||||+|||+.....|.. ||.+... ++++++|+.+ +..+|.+++.+.++...++.+
T Consensus 227 rmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee----~L~k~d~~~lVi~sh~QDfln~vCT~Ii~l~~kkl~~y~G 302 (614)
T KOG0927|consen 227 RMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEE----YLAKYDRIILVIVSHSQDFLNGVCTNIIHLDNKKLIYYEG 302 (614)
T ss_pred HHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHH----HHHhccCceEEEEecchhhhhhHhhhhheecccceeeecC
Confidence 9 9999999999999999999999999987766665 4544455 8999999988 778999999999988766655
Q ss_pred c
Q 004609 497 T 497 (742)
Q Consensus 497 ~ 497 (742)
+
T Consensus 303 n 303 (614)
T KOG0927|consen 303 N 303 (614)
T ss_pred C
Confidence 4
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.1e-21 Score=210.71 Aligned_cols=167 Identities=17% Similarity=0.216 Sum_probs=127.0
Q ss_pred CcEEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhHHhhhhhhhhceeecCCC---------C----
Q 004609 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKN---------H---- 389 (742)
Q Consensus 325 ~~l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~lGli~~maq~G~~vPa~~---------~---- 389 (742)
..|.+.+.+..||++.+ .-++++..| +.++|+||||+|||||||+|+--.+ .|+++|++- .
T Consensus 79 ~Di~~~~fdLa~G~k~LL~~a~L~L~~G-rRYGLvGrNG~GKsTLLRaia~~~v---~~f~veqE~~g~~t~~~~~~l~~ 154 (582)
T KOG0062|consen 79 KDIHIDNFDLAYGGKILLNKANLTLSRG-RRYGLVGRNGIGKSTLLRAIANGQV---SGFHVEQEVRGDDTEALQSVLES 154 (582)
T ss_pred cceeeeeeeeeecchhhhcCCceeeecc-cccceeCCCCCcHHHHHHHHHhcCc---CccCchhheeccchHHHhhhhhc
Confidence 35778889999998776 788899999 9999999999999999999943111 234444321 0
Q ss_pred ---------------CC---chHHHHHHHHcCCcc-ccccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHH
Q 004609 390 ---------------PR---LPWFDLILADIGDHQ-SLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEG 449 (742)
Q Consensus 390 ---------------~~---i~~~d~il~~ig~~~-~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLDEp~~glDp~~~ 449 (742)
+. ..++++++..+|..+ -..++..+||||.+ |+++|+++..+|+|||||||||+||...-
T Consensus 155 D~~~~dfl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av 234 (582)
T KOG0062|consen 155 DTERLDFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAV 234 (582)
T ss_pred cHHHHHHHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHHH
Confidence 00 011233566677654 45788999999999 99999999999999999999999999665
Q ss_pred HHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEecCccc
Q 004609 450 VALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFSLETLR 499 (742)
Q Consensus 450 ~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~~~~l~ 499 (742)
..| -.||...+.|+|+||||.. |...|..++..++-++.++.+++.
T Consensus 235 ~WL----e~yL~t~~~T~liVSHDr~FLn~V~tdIIH~~~~kL~~YkGN~~ 281 (582)
T KOG0062|consen 235 AWL----ENYLQTWKITSLIVSHDRNFLNTVCTDIIHLENLKLDYYKGNYS 281 (582)
T ss_pred HHH----HHHHhhCCceEEEEeccHHHHHHHHHHHHHHhhhhhhhhcCcHH
Confidence 544 4577777899999999988 677888888888766665554443
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.1e-20 Score=209.67 Aligned_cols=166 Identities=18% Similarity=0.217 Sum_probs=126.2
Q ss_pred cEEEeeeeeecCCc-ee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhh-------------------hhhhce
Q 004609 326 EMTVGSLSKGISDF-PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKAGL 382 (742)
Q Consensus 326 ~l~~~nl~~~y~~~-~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~-------------------maq~G~ 382 (742)
.+..+|+++.|++. ++ |+|+++++| +.++|+||||||||||+..| |+... ..+.-.
T Consensus 320 ei~~~~l~~~y~~g~~~l~~l~~t~~~g-~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~ 398 (559)
T COG4988 320 EISLENLSFRYPDGKPALSDLNLTIKAG-QLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQIS 398 (559)
T ss_pred eeeecceEEecCCCCcccCCceeEecCC-cEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHee
Confidence 45566999999764 44 999999999 99999999999999999999 44431 122234
Q ss_pred eecCCCCCCc-hH---------------HHHHHHHcC----------CccccccccccchHHHH-HHHHHHHhcCCCcEE
Q 004609 383 YLPAKNHPRL-PW---------------FDLILADIG----------DHQSLEQNLSTFSGHIS-RIVDILELVSRESLV 435 (742)
Q Consensus 383 ~vPa~~~~~i-~~---------------~d~il~~ig----------~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~Ll 435 (742)
++|+++...- ++ +.+++...| ++..+..+-+.+||||+ |++++|+++++++++
T Consensus 399 ~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~ 478 (559)
T COG4988 399 WVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLL 478 (559)
T ss_pred eeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEE
Confidence 5555542110 01 112233333 23345556677999999 999999999999999
Q ss_pred EEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcccccceecceEEEe
Q 004609 436 LIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 436 LLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~l~~~a~~~~~i~~g~~~~~ 494 (742)
|+||||+|+|.+.-..+..++.+ +.+ +.|+|++||......-+|+++.+++|.+.-.
T Consensus 479 llDEpTA~LD~etE~~i~~~l~~-l~~-~ktvl~itHrl~~~~~~D~I~vld~G~l~~~ 535 (559)
T COG4988 479 LLDEPTAHLDAETEQIILQALQE-LAK-QKTVLVITHRLEDAADADRIVVLDNGRLVEQ 535 (559)
T ss_pred EecCCccCCCHhHHHHHHHHHHH-HHh-CCeEEEEEcChHHHhcCCEEEEecCCceecc
Confidence 99999999999999999886655 444 3899999999999999999999999988644
|
|
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.7e-20 Score=216.80 Aligned_cols=158 Identities=18% Similarity=0.239 Sum_probs=117.9
Q ss_pred CcEEEeeeeeecCC--cee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhh-------------------hhhh
Q 004609 325 SEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKA 380 (742)
Q Consensus 325 ~~l~~~nl~~~y~~--~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~-------------------maq~ 380 (742)
+.+.++||+|+|++ +++ ++|+++++| +.++|+||||||||||+|++ |+..+ +.+.
T Consensus 319 ~~i~~~~v~f~y~~~~~~il~~i~l~i~~G-~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~ 397 (529)
T TIGR02857 319 PSLEFSGLSVAYPGRRAPALRPVSFTVPPG-ERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQ 397 (529)
T ss_pred CeEEEEEEEEECCCCCcccccceeEEECCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhh
Confidence 46899999999975 244 999999999 99999999999999999999 44432 1122
Q ss_pred ceeecCCCCC-CchHHH---------------HHHHHcCCcc-----------ccccccccchHHHH-HHHHHHHhcCCC
Q 004609 381 GLYLPAKNHP-RLPWFD---------------LILADIGDHQ-----------SLEQNLSTFSGHIS-RIVDILELVSRE 432 (742)
Q Consensus 381 G~~vPa~~~~-~i~~~d---------------~il~~ig~~~-----------~~~~~lstfSgg~k-rl~~~~~l~~~~ 432 (742)
-.++|++... .-++.+ ..+...+..+ .+.....+|||||+ |++++++++.+|
T Consensus 398 i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~ 477 (529)
T TIGR02857 398 IAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDA 477 (529)
T ss_pred eEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCC
Confidence 3455555410 001112 2233333332 23345678999999 999999999999
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcccccc
Q 004609 433 SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTR 485 (742)
Q Consensus 433 ~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~l~~~a~~~~~ 485 (742)
+++||||||+++|+.....+.+.+.+ +. .+.|+|++||+.+....+|++..
T Consensus 478 ~ililDE~ts~lD~~~~~~i~~~l~~-~~-~~~t~i~itH~~~~~~~~d~i~~ 528 (529)
T TIGR02857 478 PLLLLDEPTAHLDAETEALVTEALRA-LA-QGRTVLLVTHRLALAERADRIVV 528 (529)
T ss_pred CEEEEeCcccccCHHHHHHHHHHHHH-hc-CCCEEEEEecCHHHHHhCCEEEe
Confidence 99999999999999999999986655 33 47899999999987777877643
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.2e-20 Score=184.86 Aligned_cols=164 Identities=23% Similarity=0.264 Sum_probs=129.3
Q ss_pred cEEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhh--------------------hhhhce
Q 004609 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL--------------------MSKAGL 382 (742)
Q Consensus 326 ~l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~--------------------maq~G~ 382 (742)
.++++||+.+||+-.. ++||.+.+| +.-+|+||||+||||+|-.| |...+ .|++|.
T Consensus 5 iL~~~~vsVsF~GF~Aln~ls~~v~~G-elr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~GI 83 (249)
T COG4674 5 ILYLDGVSVSFGGFKALNDLSFSVDPG-ELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGI 83 (249)
T ss_pred eEEEeceEEEEcceeeeeeeEEEecCC-eEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhcc
Confidence 5788999999988443 999999999 99999999999999999999 33221 122221
Q ss_pred -eecCCCC--CCchH-----------------------------HHHHHHHcCCccccccccccchHHHH-HHHHHHHhc
Q 004609 383 -YLPAKNH--PRLPW-----------------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELV 429 (742)
Q Consensus 383 -~vPa~~~--~~i~~-----------------------------~d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~ 429 (742)
-.++.+. ..+++ +|.+++.+|+.+..+...++||-||+ .+-+.+.++
T Consensus 84 GRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMll~ 163 (249)
T COG4674 84 GRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLA 163 (249)
T ss_pred CccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhheeec
Confidence 1111110 01111 45678889999999999999999999 455558889
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEE
Q 004609 430 SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATE 492 (742)
Q Consensus 430 ~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~ 492 (742)
.+|.|||||||.+|+--.+....++ ++..++. .++++++.||++ +..+|+++-.+..|++.
T Consensus 164 Q~P~lLLlDEPvAGMTd~Et~~tae-Ll~~la~-~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL 225 (249)
T COG4674 164 QDPKLLLLDEPVAGMTDAETEKTAE-LLKSLAG-KHSILVVEHDMGFVREIADKVTVLHEGSVL 225 (249)
T ss_pred cCCcEEEecCccCCCcHHHHHHHHH-HHHHHhc-CceEEEEeccHHHHHHhhheeEEEecccee
Confidence 9999999999999999999999998 6767776 589999999999 56799999999998874
|
|
| >TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.8e-20 Score=203.79 Aligned_cols=139 Identities=17% Similarity=0.109 Sum_probs=108.7
Q ss_pred EEeCCCCCcchHHhhH-Hhhhhh-----------------hhhceeecCCCC--CCchHH--------------------
Q 004609 356 ITGPNTGGKTASMKTL-GLASLM-----------------SKAGLYLPAKNH--PRLPWF-------------------- 395 (742)
Q Consensus 356 ItGpNGsGKSTlLK~l-Gli~~m-----------------aq~G~~vPa~~~--~~i~~~-------------------- 395 (742)
|+||||||||||||+| |+..+- .+...|+|+... ..+++.
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~ 80 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKPR 80 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHHH
Confidence 6899999999999999 665321 111235666531 111222
Q ss_pred -HHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecC
Q 004609 396 -DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHY 473 (742)
Q Consensus 396 -d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~ 473 (742)
+.++..+|+.+..++.+++|||||+ |++++++++.+|+++||||||+|||+.....+...+.+...+.|.|+|++||+
T Consensus 81 ~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTHd 160 (325)
T TIGR01187 81 VLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHD 160 (325)
T ss_pred HHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 2345667777788999999999999 99999999999999999999999999999999985555444558899999999
Q ss_pred hh-hhhhcccccceecceEEEe
Q 004609 474 AD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 474 ~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
.+ +..+|+++..+.+|.+...
T Consensus 161 ~~e~~~~~d~i~vl~~G~i~~~ 182 (325)
T TIGR01187 161 QEEAMTMSDRIAIMRKGKIAQI 182 (325)
T ss_pred HHHHHHhCCEEEEEECCEEEEE
Confidence 87 5678999999999988654
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). |
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.1e-20 Score=189.82 Aligned_cols=162 Identities=22% Similarity=0.323 Sum_probs=132.0
Q ss_pred eeeeecCCceecccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhh-------------hhhhce----------eecC
Q 004609 331 SLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------MSKAGL----------YLPA 386 (742)
Q Consensus 331 nl~~~y~~~~v~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~-------------maq~G~----------~vPa 386 (742)
|+.+.+|+..++++|.++.. .+++|.|++||||||++++| ||+.+ -+..|. ||++
T Consensus 5 ~~~~~lG~~~l~a~~~~p~~-GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQ 83 (352)
T COG4148 5 NFRQRLGNFALDANFTLPAR-GITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQ 83 (352)
T ss_pred ehhhhcCceEEEEeccCCCC-ceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEee
Confidence 34455666667999999874 69999999999999999999 66643 122233 3433
Q ss_pred CCC-----------------CCchHHHHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHH
Q 004609 387 KNH-----------------PRLPWFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSE 448 (742)
Q Consensus 387 ~~~-----------------~~i~~~d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLDEp~~glDp~~ 448 (742)
+-. .....||++...+|++..+++.+++||||++ |+++.+++++.|.|||||||.+.||..-
T Consensus 84 DARLFpH~tVrgNL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~R 163 (352)
T COG4148 84 DARLFPHYTVRGNLRYGMWKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPR 163 (352)
T ss_pred ccccccceEEecchhhhhcccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccch
Confidence 320 1112489999999999999999999999999 8999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcC-CcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 449 GVALATSILQYLRDR-VGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 449 ~~aL~~all~~l~~~-~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
...+.- .++.|++. ..-++++||.++ +.++|+++..++||++...
T Consensus 164 K~Eilp-ylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~ 210 (352)
T COG4148 164 KREILP-YLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKAS 210 (352)
T ss_pred hhHHHH-HHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEec
Confidence 999988 77777654 667999999975 8899999999999998754
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=99.81 E-value=9.7e-20 Score=210.54 Aligned_cols=147 Identities=22% Similarity=0.248 Sum_probs=109.1
Q ss_pred CcEEEeeeeeecCC-cee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhh------------------hhhhce
Q 004609 325 SEMTVGSLSKGISD-FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL------------------MSKAGL 382 (742)
Q Consensus 325 ~~l~~~nl~~~y~~-~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~------------------maq~G~ 382 (742)
+.++++||+|+|++ +++ ++||++++| +.++|+||||||||||+|++ |+..+ +.+.-.
T Consensus 333 ~~I~~~~vsf~Y~~~~~vL~~isl~i~~G-~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~ 411 (529)
T TIGR02868 333 PTLELRDLSFGYPGSPPVLDGVSLDLPPG-ERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRIS 411 (529)
T ss_pred ceEEEEEEEEecCCCCceeecceEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheE
Confidence 46899999999965 344 999999999 99999999999999999999 44432 011234
Q ss_pred eecCCCCCC-chHHH---------------HHHHHcCCccc-----------cccccccchHHHH-HHHHHHHhcCCCcE
Q 004609 383 YLPAKNHPR-LPWFD---------------LILADIGDHQS-----------LEQNLSTFSGHIS-RIVDILELVSRESL 434 (742)
Q Consensus 383 ~vPa~~~~~-i~~~d---------------~il~~ig~~~~-----------~~~~lstfSgg~k-rl~~~~~l~~~~~L 434 (742)
++||+.... -++.+ +.+...+..+. +...-..|||||+ |+++||+++.+|++
T Consensus 412 ~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~i 491 (529)
T TIGR02868 412 VFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPI 491 (529)
T ss_pred EEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCE
Confidence 666654200 01122 22333333332 2234467999999 99999999999999
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCh
Q 004609 435 VLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYA 474 (742)
Q Consensus 435 lLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~ 474 (742)
+||||||+++|+.....+.+++.+ + ..+.|+|++||..
T Consensus 492 liLDE~TSaLD~~te~~I~~~l~~-~-~~~~TvIiItHrl 529 (529)
T TIGR02868 492 LLLDEPTEHLDAGTESELLEDLLA-A-LSGKTVVVITHHL 529 (529)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHH-h-cCCCEEEEEecCC
Confidence 999999999999999999886654 3 2368999999973
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.9e-19 Score=179.16 Aligned_cols=145 Identities=15% Similarity=0.239 Sum_probs=120.3
Q ss_pred cccccccCCceEEEEEeCCCCCcchHHhhHHhhhhhhhhceeecCCCCC-------------------------------
Q 004609 342 PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHP------------------------------- 390 (742)
Q Consensus 342 ~i~l~l~~g~~~~~ItGpNGsGKSTlLK~lGli~~maq~G~~vPa~~~~------------------------------- 390 (742)
.+++++..| +++.|+|.||+||||||++| +|-..|.+|..
T Consensus 24 ~~sL~I~~g-~FvtViGsNGAGKSTlln~i--------aG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~ 94 (263)
T COG1101 24 GLSLEIAEG-DFVTVIGSNGAGKSTLLNAI--------AGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTA 94 (263)
T ss_pred cCceeecCC-ceEEEEcCCCccHHHHHHHh--------hCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCc
Confidence 899999999 99999999999999999999 55555555521
Q ss_pred -CchHHHH---------------------------HHHH--cCCccccccccccchHHHH-HHHHHHHhcCCCcEEEEcC
Q 004609 391 -RLPWFDL---------------------------ILAD--IGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDE 439 (742)
Q Consensus 391 -~i~~~d~---------------------------il~~--ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLDE 439 (742)
.+++.++ -++. .|++..++.++.-|||||+ -++++++.+++|.++||||
T Consensus 95 ~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDE 174 (263)
T COG1101 95 PELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDE 174 (263)
T ss_pred ccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecc
Confidence 1222222 2222 3567788899999999999 5888899999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEec
Q 004609 440 IGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFSL 495 (742)
Q Consensus 440 p~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~~ 495 (742)
-|+.|||.....+++.--+...+.+.|++++||+++ -..|.++.+.+++|.++.|.
T Consensus 175 HTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~IvlDv 231 (263)
T COG1101 175 HTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLDV 231 (263)
T ss_pred hhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEEEEc
Confidence 999999999999999777777777889999999988 55799999999999998874
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.8e-19 Score=208.48 Aligned_cols=167 Identities=18% Similarity=0.197 Sum_probs=126.8
Q ss_pred CcEEEeeeeeecC-Ccee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhh-------------------hhhhc
Q 004609 325 SEMTVGSLSKGIS-DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKAG 381 (742)
Q Consensus 325 ~~l~~~nl~~~y~-~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~-------------------maq~G 381 (742)
+.++++||+++|+ ++++ ++||++++| +.++|+||+||||||+++++ ++..+ +.+.-
T Consensus 327 ~~I~f~~vsf~y~~~~~vl~~is~~i~~G-e~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I 405 (567)
T COG1132 327 GSIEFENVSFSYPGKKPVLKDISFSIEPG-EKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRI 405 (567)
T ss_pred CeEEEEEEEEEcCCCCccccCceEEEcCC-CEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhc
Confidence 5689999999998 4555 899999999 99999999999999999999 33322 11222
Q ss_pred eeecCCCCC-CchHHHHH------------------------HHHc--CCccccccccccchHHHH-HHHHHHHhcCCCc
Q 004609 382 LYLPAKNHP-RLPWFDLI------------------------LADI--GDHQSLEQNLSTFSGHIS-RIVDILELVSRES 433 (742)
Q Consensus 382 ~~vPa~~~~-~i~~~d~i------------------------l~~i--g~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~ 433 (742)
.+|||+... .-++.++| +..+ |.+..+..+-+.|||||+ |+++|++++.+|+
T Consensus 406 ~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ 485 (567)
T COG1132 406 GIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPP 485 (567)
T ss_pred cEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCC
Confidence 256655410 00111111 2222 334445556678999999 9999999999999
Q ss_pred EEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcccccceecceEEEe
Q 004609 434 LVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 434 LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~l~~~a~~~~~i~~g~~~~~ 494 (742)
+++|||||+++|+..-..+.+++.+ +. ++.|+|+++|.+.....||+++.+++|++...
T Consensus 486 ILILDEaTSalD~~tE~~I~~~l~~-l~-~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~ 544 (567)
T COG1132 486 ILILDEATSALDTETEALIQDALKK-LL-KGRTTLIIAHRLSTIKNADRIIVLDNGRIVER 544 (567)
T ss_pred EEEEeccccccCHHhHHHHHHHHHH-Hh-cCCEEEEEeccHhHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999997764 44 35699999999986666999999999996543
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.8e-19 Score=226.28 Aligned_cols=164 Identities=12% Similarity=0.107 Sum_probs=123.0
Q ss_pred cEEEeeeeeecCCc---ee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhh--------------------hhh
Q 004609 326 EMTVGSLSKGISDF---PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL--------------------MSK 379 (742)
Q Consensus 326 ~l~~~nl~~~y~~~---~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~--------------------maq 379 (742)
.++++||+|.|++. ++ ++||++++| ++++|+||||||||||+++| |+..+ +.+
T Consensus 382 ~I~~~nVsf~Y~~~~~~~vL~~isl~i~~G-e~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~ 460 (1466)
T PTZ00265 382 KIQFKNVRFHYDTRKDVEIYKDLNFTLTEG-KTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRS 460 (1466)
T ss_pred cEEEEEEEEEcCCCCCCceeccceEEEcCC-CEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHH
Confidence 68999999999752 34 999999999 99999999999999999999 44422 111
Q ss_pred hceeecCCCCC-CchHHHHHH-----------------------------------------------------------
Q 004609 380 AGLYLPAKNHP-RLPWFDLIL----------------------------------------------------------- 399 (742)
Q Consensus 380 ~G~~vPa~~~~-~i~~~d~il----------------------------------------------------------- 399 (742)
...+||++... ..++.++|.
T Consensus 461 ~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 540 (1466)
T PTZ00265 461 KIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKN 540 (1466)
T ss_pred hccEecccccchhccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcccc
Confidence 12355555310 012222321
Q ss_pred -------------HHcCCccc-----------cccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHH
Q 004609 400 -------------ADIGDHQS-----------LEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALAT 454 (742)
Q Consensus 400 -------------~~ig~~~~-----------~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLDEp~~glDp~~~~aL~~ 454 (742)
...+..+. +....+.|||||+ |++++++++.+|++|||||||++||+.....+..
T Consensus 541 ~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~ 620 (1466)
T PTZ00265 541 YQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQK 620 (1466)
T ss_pred cccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHH
Confidence 11222221 2456789999999 9999999999999999999999999999999988
Q ss_pred HHHHHHhcCCcEEEEEecChhhhhhcccccceecce
Q 004609 455 SILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAA 490 (742)
Q Consensus 455 all~~l~~~~~~vlitTH~~~l~~~a~~~~~i~~g~ 490 (742)
++.+...+.|.|+|++||+++....||+++.+.+|+
T Consensus 621 ~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g~ 656 (1466)
T PTZ00265 621 TINNLKGNENRITIIIAHRLSTIRYANTIFVLSNRE 656 (1466)
T ss_pred HHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCCc
Confidence 555433335889999999998778999999998874
|
|
| >cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.9e-19 Score=180.04 Aligned_cols=139 Identities=17% Similarity=0.142 Sum_probs=102.5
Q ss_pred cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhh-------------h---h---------hhceeecCCCCCCc---
Q 004609 342 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------M---S---------KAGLYLPAKNHPRL--- 392 (742)
Q Consensus 342 ~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~-------------m---a---------q~G~~vPa~~~~~i--- 392 (742)
++++++.+| +++|+||||+||||||+++ |++.. + . ....++|+.....+
T Consensus 15 ~~~l~~~~g--~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~~~~~ 92 (197)
T cd03278 15 KTTIPFPPG--LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGRYSII 92 (197)
T ss_pred CeeeecCCC--cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCceeEE
Confidence 567778777 8999999999999999999 44311 0 0 01134555442222
Q ss_pred --hHHHHHHHHcCCccccccccccchHHHH-HHHHHHHhc----CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCc
Q 004609 393 --PWFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELV----SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVG 465 (742)
Q Consensus 393 --~~~d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~----~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~ 465 (742)
.-+++++.. .+..++.+.+||+||+ |++++++++ .+|+++|||||++|+|+.....+.. ++..+.+ +.
T Consensus 93 ~~~~~~~~l~~---~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~-~l~~~~~-~~ 167 (197)
T cd03278 93 SQGDVSEIIEA---PGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFAR-LLKEFSK-ET 167 (197)
T ss_pred ehhhHHHHHhC---CCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHH-HHHHhcc-CC
Confidence 123444444 4456788999999999 888888775 5779999999999999999999998 5555655 68
Q ss_pred EEEEEecChhhhhhccccccee
Q 004609 466 LAVVTTHYADLSCLKDKDTRFE 487 (742)
Q Consensus 466 ~vlitTH~~~l~~~a~~~~~i~ 487 (742)
++|++||+.+...++++.+.+.
T Consensus 168 tiIiitH~~~~~~~~d~v~~~~ 189 (197)
T cd03278 168 QFIVITHRKGTMEAADRLYGVT 189 (197)
T ss_pred EEEEEECCHHHHhhcceEEEEE
Confidence 9999999998777788766543
|
Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w |
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.7e-19 Score=223.79 Aligned_cols=168 Identities=15% Similarity=0.195 Sum_probs=132.5
Q ss_pred cEEEeeeeeecC----Ccee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhh---h---------------hhhh
Q 004609 326 EMTVGSLSKGIS----DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLAS---L---------------MSKA 380 (742)
Q Consensus 326 ~l~~~nl~~~y~----~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~---~---------------maq~ 380 (742)
.+.++||++.|+ ++.+ ++|+.+.+| ++++|+|||||||||||++| |+.. + +.+.
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~G-e~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~ 837 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPG-TLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRS 837 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcc
Confidence 578999999984 3344 999999999 99999999999999999999 6553 1 1122
Q ss_pred ceeecCCCC--CCch------------------------HHHHHHHHcCCccccccccc----cchHHHH-HHHHHHHhc
Q 004609 381 GLYLPAKNH--PRLP------------------------WFDLILADIGDHQSLEQNLS----TFSGHIS-RIVDILELV 429 (742)
Q Consensus 381 G~~vPa~~~--~~i~------------------------~~d~il~~ig~~~~~~~~ls----tfSgg~k-rl~~~~~l~ 429 (742)
-.|+|++.. ..++ .+++++..+|+.+..++.++ .|||||+ |+.++++++
T Consensus 838 i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~ 917 (1394)
T TIGR00956 838 IGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELV 917 (1394)
T ss_pred eeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHH
Confidence 347776531 1111 13456667777777777776 7999999 899999999
Q ss_pred CCCc-EEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChhh--hhhcccccceecc-eEEEec
Q 004609 430 SRES-LVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL--SCLKDKDTRFENA-ATEFSL 495 (742)
Q Consensus 430 ~~~~-LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~l--~~~a~~~~~i~~g-~~~~~~ 495 (742)
.+|+ +|||||||+|||+.....+.. +++.+++.|.|||+|||+... ...+|+...+.+| ++.+..
T Consensus 918 ~~P~~iLlLDEPTsgLD~~~~~~i~~-~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G 986 (1394)
T TIGR00956 918 AKPKLLLFLDEPTSGLDSQTAWSICK-LMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFG 986 (1394)
T ss_pred cCCCeEEEEcCCCCCCCHHHHHHHHH-HHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEEC
Confidence 9996 999999999999999999998 666677778999999999873 4678999999987 877653
|
|
| >KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.9e-19 Score=216.02 Aligned_cols=166 Identities=23% Similarity=0.272 Sum_probs=135.2
Q ss_pred CcEEEeeeeeecCCc--ee-cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh--------------------hhh
Q 004609 325 SEMTVGSLSKGISDF--PV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------SKA 380 (742)
Q Consensus 325 ~~l~~~nl~~~y~~~--~v-~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m--------------------aq~ 380 (742)
..+.+.|+++.|+.. .| .+++.+++| ++++++|||||||||++|++ |...+- .++
T Consensus 563 ~~~~~~~L~k~y~~~~~Av~~ls~~V~~g-ecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~ 641 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDGAVRGLSFAVPPG-ECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQ 641 (885)
T ss_pred ceEEEcceeeeecchhhhhcceEEEecCC-ceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhh
Confidence 467889999999876 46 999999999 99999999999999999998 444320 111
Q ss_pred ceeecCCCCCCch------------------------HHHHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEE
Q 004609 381 GLYLPAKNHPRLP------------------------WFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLV 435 (742)
Q Consensus 381 G~~vPa~~~~~i~------------------------~~d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~Ll 435 (742)
-+|.|+.. +-++ .++.++..+|+....++..+++|||++ |+..+.+++.+|+++
T Consensus 642 iGyCPQ~d-~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi 720 (885)
T KOG0059|consen 642 LGYCPQFD-ALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVI 720 (885)
T ss_pred cccCCchh-hhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEE
Confidence 22455543 1000 134456778888999999999999999 899999999999999
Q ss_pred EEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEE
Q 004609 436 LIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF 493 (742)
Q Consensus 436 LLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~ 493 (742)
+||||++|+||..+..++. ++..+++.|..+|+|||+++ -..+|++...+.+|++..
T Consensus 721 ~LDEPstGmDP~arr~lW~-ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~c 778 (885)
T KOG0059|consen 721 LLDEPSTGLDPKARRHLWD-IIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLRC 778 (885)
T ss_pred EecCCCCCCCHHHHHHHHH-HHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeEE
Confidence 9999999999999999988 66677776669999999988 556899999999998865
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=6e-19 Score=223.29 Aligned_cols=167 Identities=15% Similarity=0.183 Sum_probs=123.9
Q ss_pred CcEEEeeeeeecCC---cee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhh----------------------
Q 004609 325 SEMTVGSLSKGISD---FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL---------------------- 376 (742)
Q Consensus 325 ~~l~~~nl~~~y~~---~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~---------------------- 376 (742)
|.++++||+|+|.+ .+| ++||++++| +.++|+||+||||||++++| |+..+
T Consensus 1164 g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G-~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~ 1242 (1466)
T PTZ00265 1164 GKIEIMDVNFRYISRPNVPIYKDLTFSCDSK-KTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDY 1242 (1466)
T ss_pred ceEEEEEEEEECCCCCCCccccCeeEEEcCC-CEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccc
Confidence 57999999999953 345 999999999 99999999999999999999 44432
Q ss_pred ---------------------------------------------------hhhhceeecCCCCC-CchHHHHH------
Q 004609 377 ---------------------------------------------------MSKAGLYLPAKNHP-RLPWFDLI------ 398 (742)
Q Consensus 377 ---------------------------------------------------maq~G~~vPa~~~~-~i~~~d~i------ 398 (742)
+.+...+|||+... .-++.++|
T Consensus 1243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~ 1322 (1466)
T PTZ00265 1243 QGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKED 1322 (1466)
T ss_pred ccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCC
Confidence 01112244444310 00112222
Q ss_pred ---------HHHcCC-----------ccccccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHH
Q 004609 399 ---------LADIGD-----------HQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSIL 457 (742)
Q Consensus 399 ---------l~~ig~-----------~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLDEp~~glDp~~~~aL~~all 457 (742)
+...+. +..+..+-..|||||+ |+++||+++.+|++|||||||++||+.....+..++.
T Consensus 1323 at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~ 1402 (1466)
T PTZ00265 1323 ATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIV 1402 (1466)
T ss_pred CCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHH
Confidence 222222 2223345578999999 9999999999999999999999999999999888665
Q ss_pred HHHhcCCcEEEEEecChhhhhhcccccceec----ceEE
Q 004609 458 QYLRDRVGLAVVTTHYADLSCLKDKDTRFEN----AATE 492 (742)
Q Consensus 458 ~~l~~~~~~vlitTH~~~l~~~a~~~~~i~~----g~~~ 492 (742)
+.....+.|+|++||.+.....||+++.+++ |++.
T Consensus 1403 ~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv 1441 (1466)
T PTZ00265 1403 DIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFV 1441 (1466)
T ss_pred HHhccCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEE
Confidence 5322357899999999998888999999998 7743
|
|
| >COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=5e-19 Score=166.86 Aligned_cols=151 Identities=18% Similarity=0.191 Sum_probs=122.2
Q ss_pred cEEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhh---------------------hhhhc
Q 004609 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL---------------------MSKAG 381 (742)
Q Consensus 326 ~l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~---------------------maq~G 381 (742)
.++++||+.+.++... ++|++|.+| +++-|.||+||||||||.-+ |.+.. -.|.|
T Consensus 2 ~l~l~nvsl~l~g~cLLa~~n~Tia~G-eivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~G 80 (213)
T COG4136 2 MLCLKNVSLRLPGSCLLANVNFTIAKG-EIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIG 80 (213)
T ss_pred ceeeeeeeecCCCceEEEeeeEEecCC-cEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhhee
Confidence 3577888888877776 899999999 99999999999999999987 44421 12333
Q ss_pred eeecCCC--CCCc--------------------hHHHHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEEEEc
Q 004609 382 LYLPAKN--HPRL--------------------PWFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLID 438 (742)
Q Consensus 382 ~~vPa~~--~~~i--------------------~~~d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLD 438 (742)
+. +++. ...+ ...+..++++|+....++.+.|+|||++ |+++.++++..|.++|||
T Consensus 81 iL-FQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLD 159 (213)
T COG4136 81 IL-FQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLD 159 (213)
T ss_pred ee-ecccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcceeeeC
Confidence 21 1221 0011 1244568899999999999999999999 999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChhhhh
Q 004609 439 EIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSC 478 (742)
Q Consensus 439 Ep~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~l~~ 478 (742)
||++.||..-+...-+-+...++..|.-++.+|||++-..
T Consensus 160 EPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~Dvp 199 (213)
T COG4136 160 EPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVP 199 (213)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCC
Confidence 9999999999999998888888888999999999976443
|
|
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.6e-19 Score=192.00 Aligned_cols=153 Identities=23% Similarity=0.316 Sum_probs=120.6
Q ss_pred cEEEeeeeeec-CCcee--cccccccCCceEEEEEeCCCCCcchHHhhHHhhhhhhhhceeecCCCC------CCchHHH
Q 004609 326 EMTVGSLSKGI-SDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNH------PRLPWFD 396 (742)
Q Consensus 326 ~l~~~nl~~~y-~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~lGli~~maq~G~~vPa~~~------~~i~~~d 396 (742)
++-+.||+|+| |.+++ .+||-|.-. ..++|+||||.||||||+++ .|-.-|.+|. ..+++||
T Consensus 586 vLGlH~VtFgy~gqkpLFkkldFGiDmd-SRiaIVGPNGVGKSTlLkLL--------~Gkl~P~~GE~RKnhrL~iG~Fd 656 (807)
T KOG0066|consen 586 VLGLHDVTFGYPGQKPLFKKLDFGIDMD-SRIAIVGPNGVGKSTLLKLL--------IGKLDPNDGELRKNHRLRIGWFD 656 (807)
T ss_pred eeecccccccCCCCCchhhccccccccc-ceeEEECCCCccHHHHHHHH--------hcCCCCCcchhhccceeeeechh
Confidence 56678999999 44554 888888877 78999999999999999999 8888888772 3566666
Q ss_pred HH-----------------------------HHHcCCcccc-ccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCC
Q 004609 397 LI-----------------------------LADIGDHQSL-EQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTD 445 (742)
Q Consensus 397 ~i-----------------------------l~~ig~~~~~-~~~lstfSgg~k-rl~~~~~l~~~~~LlLLDEp~~glD 445 (742)
+- +..+|+.... .-.+..||||++ |++++-..+..|++|||||||++||
T Consensus 657 Qh~~E~L~~Eetp~EyLqr~FNlpyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEPTNNLD 736 (807)
T KOG0066|consen 657 QHANEALNGEETPVEYLQRKFNLPYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNLD 736 (807)
T ss_pred hhhHHhhccccCHHHHHHHhcCCChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcc
Confidence 42 2233333222 235678999999 9999988889999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEecChhhh-hhcccccceecceE
Q 004609 446 PSEGVALATSILQYLRDRVGLAVVTTHYADLS-CLKDKDTRFENAAT 491 (742)
Q Consensus 446 p~~~~aL~~all~~l~~~~~~vlitTH~~~l~-~~a~~~~~i~~g~~ 491 (742)
+.+-.+|+.||-+| .+.||++|||..+. .-....|++++..+
T Consensus 737 IESIDALaEAIney----~GgVi~VsHDeRLi~eT~C~LwVvE~Q~i 779 (807)
T KOG0066|consen 737 IESIDALAEAINEY----NGGVIMVSHDERLIVETDCNLWVVENQGI 779 (807)
T ss_pred hhhHHHHHHHHHhc----cCcEEEEecccceeeecCceEEEEccCCh
Confidence 99999999999988 88999999997643 44445666666554
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=7.5e-19 Score=210.79 Aligned_cols=160 Identities=19% Similarity=0.228 Sum_probs=124.0
Q ss_pred CCCcEEEeeeeeecCCce---e--cccccccCCceEEEEEeCCCCCcchHHhhHHhhhhhhhhceeecCCCCCCch----
Q 004609 323 ENSEMTVGSLSKGISDFP---V--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLP---- 393 (742)
Q Consensus 323 ~~~~l~~~nl~~~y~~~~---v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~lGli~~maq~G~~vPa~~~~~i~---- 393 (742)
-+|.++++||.|+|+.++ | ++||.+++| +.++|+||+||||||+++++ .++|-|..|...+.
T Consensus 347 ~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G-~~valVG~SGsGKST~i~LL--------~RfydP~~G~V~idG~di 417 (1228)
T KOG0055|consen 347 IKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSG-QTVALVGPSGSGKSTLIQLL--------ARFYDPTSGEVLIDGEDI 417 (1228)
T ss_pred cccceEEEEEEecCCCCCcchhhCCeEEEeCCC-CEEEEECCCCCCHHHHHHHH--------HHhcCCCCceEEEcCccc
Confidence 357899999999997654 3 899999999 99999999999999999999 77777777632111
Q ss_pred -------------------------HHHHHHH---------------Hc-----------CCccccccccccchHHHH-H
Q 004609 394 -------------------------WFDLILA---------------DI-----------GDHQSLEQNLSTFSGHIS-R 421 (742)
Q Consensus 394 -------------------------~~d~il~---------------~i-----------g~~~~~~~~lstfSgg~k-r 421 (742)
+.++|.- .. |.+-.+-..--+|||||| |
T Consensus 418 ~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQR 497 (1228)
T KOG0055|consen 418 RNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQR 497 (1228)
T ss_pred hhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHH
Confidence 1122210 00 111112233345999999 9
Q ss_pred HHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcccccceecceEEE
Q 004609 422 IVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEF 493 (742)
Q Consensus 422 l~~~~~l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~l~~~a~~~~~i~~g~~~~ 493 (742)
+++|++++.+|.+|||||||++||+.+...+..|+ +...+ |.|+|+++|.+...+.+|.+..+++|.+.-
T Consensus 498 IAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~AL-d~~~~-grTTivVaHRLStIrnaD~I~v~~~G~IvE 567 (1228)
T KOG0055|consen 498 IAIARALVRNPKILLLDEATSALDAESERVVQEAL-DKASK-GRTTIVVAHRLSTIRNADKIAVMEEGKIVE 567 (1228)
T ss_pred HHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHH-HHhhc-CCeEEEEeeehhhhhccCEEEEEECCEEEE
Confidence 99999999999999999999999999988888755 44444 779999999998666799999999998753
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.4e-18 Score=219.19 Aligned_cols=168 Identities=17% Similarity=0.195 Sum_probs=130.1
Q ss_pred cEEEeeeeeecC-------------Ccee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhh-------------
Q 004609 326 EMTVGSLSKGIS-------------DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL------------- 376 (742)
Q Consensus 326 ~l~~~nl~~~y~-------------~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~------------- 376 (742)
.+..+||++.+. .+.+ ++|+.+.+| ++++|+|||||||||||++| |+...
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~G-el~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~ 945 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPG-VLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFP 945 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECC-eEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCcc
Confidence 578899987752 2234 999999999 99999999999999999999 54321
Q ss_pred -----hhhhceeecCCCC--CCchH------------------------HHHHHHHcCCcccccccc-----ccchHHHH
Q 004609 377 -----MSKAGLYLPAKNH--PRLPW------------------------FDLILADIGDHQSLEQNL-----STFSGHIS 420 (742)
Q Consensus 377 -----maq~G~~vPa~~~--~~i~~------------------------~d~il~~ig~~~~~~~~l-----stfSgg~k 420 (742)
..+...|+|+... ..+++ ++.++..+|+.+..+..+ +.|||||+
T Consensus 946 ~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGer 1025 (1470)
T PLN03140 946 KKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQR 1025 (1470)
T ss_pred CChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHH
Confidence 1122246666531 11111 344566677766666654 68999999
Q ss_pred -HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh--hhhhcccccceec-ceEEEec
Q 004609 421 -RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD--LSCLKDKDTRFEN-AATEFSL 495 (742)
Q Consensus 421 -rl~~~~~l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~--l~~~a~~~~~i~~-g~~~~~~ 495 (742)
|+.++++++.+|+++||||||+|||+.....+.. ++..+++.|.|||+|||+.. +..++|+...+.+ |++.+..
T Consensus 1026 kRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~-~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G 1103 (1470)
T PLN03140 1026 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR-TVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSG 1103 (1470)
T ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEEC
Confidence 9999999999999999999999999999999998 55567777899999999976 4678999999986 7877653
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.8e-18 Score=190.11 Aligned_cols=170 Identities=24% Similarity=0.261 Sum_probs=128.6
Q ss_pred CCCcEEEeeeeeecCC--cee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhh-------------------hh
Q 004609 323 ENSEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MS 378 (742)
Q Consensus 323 ~~~~l~~~nl~~~y~~--~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~-------------------ma 378 (742)
.+|.+.++++++.=.+ +++ +++|.+.+| +.++|+||+|||||||.|++ |...+ ++
T Consensus 331 P~g~L~Ve~l~~~PPg~~~pil~~isF~l~~G-~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG 409 (580)
T COG4618 331 PQGALSVERLTAAPPGQKKPILKGISFALQAG-EALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLG 409 (580)
T ss_pred CCceeeEeeeeecCCCCCCcceecceeEecCC-ceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhc
Confidence 3578888888885532 344 999999999 99999999999999999999 33221 22
Q ss_pred hhceeecCCCCCCchHHHHHHHHc---------------------------CCccccccccccchHHHH-HHHHHHHhcC
Q 004609 379 KAGLYLPAKNHPRLPWFDLILADI---------------------------GDHQSLEQNLSTFSGHIS-RIVDILELVS 430 (742)
Q Consensus 379 q~G~~vPa~~~~~i~~~d~il~~i---------------------------g~~~~~~~~lstfSgg~k-rl~~~~~l~~ 430 (742)
+...|.|++-.-.-+-+.+=.++| |.+..+-..-++|||||+ |+.+++++-.
T Consensus 410 ~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG 489 (580)
T COG4618 410 RHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYG 489 (580)
T ss_pred cccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcC
Confidence 222344443210000011111222 233455567789999999 9999999999
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcccccceecceEEEe
Q 004609 431 RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 431 ~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~l~~~a~~~~~i~~g~~~~~ 494 (742)
+|.||+||||-++||...-.+|+.||+. ++.+|+++|++||-..+...+|++..+.+|.+...
T Consensus 490 ~P~lvVLDEPNsNLD~~GE~AL~~Ai~~-~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~F 552 (580)
T COG4618 490 DPFLVVLDEPNSNLDSEGEAALAAAILA-AKARGGTVVVIAHRPSALASVDKILVLQDGRIAAF 552 (580)
T ss_pred CCcEEEecCCCCCcchhHHHHHHHHHHH-HHHcCCEEEEEecCHHHHhhcceeeeecCChHHhc
Confidence 9999999999999999999999998775 67889999999999999999999999999988543
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=99.78 E-value=9.5e-19 Score=205.72 Aligned_cols=152 Identities=21% Similarity=0.258 Sum_probs=122.3
Q ss_pred cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhh-------------------hhhhceeecCCCC--CCchH-----
Q 004609 342 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKAGLYLPAKNH--PRLPW----- 394 (742)
Q Consensus 342 ~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~-------------------maq~G~~vPa~~~--~~i~~----- 394 (742)
++|+++.+| ++++|+|||||||||||++| |.... +.+...|+|++.. ..+++
T Consensus 43 ~vs~~i~~G-e~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV~e~l~ 121 (617)
T TIGR00955 43 NVSGVAKPG-ELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTVREHLM 121 (617)
T ss_pred CCEEEEeCC-eEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcHHHHHH
Confidence 999999999 99999999999999999999 54421 0112257777641 11111
Q ss_pred -------------------HHHHHHHcCCccccccccc------cchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHH
Q 004609 395 -------------------FDLILADIGDHQSLEQNLS------TFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSE 448 (742)
Q Consensus 395 -------------------~d~il~~ig~~~~~~~~ls------tfSgg~k-rl~~~~~l~~~~~LlLLDEp~~glDp~~ 448 (742)
++.++..+|+.+..+..+. .+||||+ |+.++++++.+|++++|||||+|||+..
T Consensus 122 f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~ 201 (617)
T TIGR00955 122 FQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFM 201 (617)
T ss_pred HHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHH
Confidence 4456777777766666655 5999999 9999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEecCh--hhhhhcccccceecceEEEec
Q 004609 449 GVALATSILQYLRDRVGLAVVTTHYA--DLSCLKDKDTRFENAATEFSL 495 (742)
Q Consensus 449 ~~aL~~all~~l~~~~~~vlitTH~~--~l~~~a~~~~~i~~g~~~~~~ 495 (742)
...+.. .+..+.+.|.|+|++||+. ++..++|+...+.+|.+.+..
T Consensus 202 ~~~l~~-~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G 249 (617)
T TIGR00955 202 AYSVVQ-VLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLG 249 (617)
T ss_pred HHHHHH-HHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEEC
Confidence 999999 4555666789999999996 377899999999999998764
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.1e-18 Score=199.43 Aligned_cols=160 Identities=18% Similarity=0.215 Sum_probs=126.5
Q ss_pred CCcEEEeeeeeecCCce---e--cccccccCCceEEEEEeCCCCCcchHHhhHHhhhhhhhhceeecCCCCCCch-----
Q 004609 324 NSEMTVGSLSKGISDFP---V--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLP----- 393 (742)
Q Consensus 324 ~~~l~~~nl~~~y~~~~---v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~lGli~~maq~G~~vPa~~~~~i~----- 393 (742)
.|.++++||+|.|..++ | ++||+|++| ++++|+||||+||||+..++ .-+|-|++|...+.
T Consensus 463 ~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pG-e~vALVGPSGsGKSTiasLL--------~rfY~PtsG~IllDG~~i~ 533 (716)
T KOG0058|consen 463 QGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPG-EVVALVGPSGSGKSTIASLL--------LRFYDPTSGRILLDGVPIS 533 (716)
T ss_pred cceEEEEEeeeecCCCCCchhhcCceeeeCCC-CEEEEECCCCCCHHHHHHHH--------HHhcCCCCCeEEECCeehh
Confidence 47899999999997643 4 999999999 99999999999999999999 66677776632111
Q ss_pred ------------------------HHHHHH------------------------HHc--CCccccccccccchHHHH-HH
Q 004609 394 ------------------------WFDLIL------------------------ADI--GDHQSLEQNLSTFSGHIS-RI 422 (742)
Q Consensus 394 ------------------------~~d~il------------------------~~i--g~~~~~~~~lstfSgg~k-rl 422 (742)
+-++|. ..+ |.+-.+...-+.|||||| |+
T Consensus 534 ~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRI 613 (716)
T KOG0058|consen 534 DINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRI 613 (716)
T ss_pred hcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHH
Confidence 112221 111 122334456789999999 99
Q ss_pred HHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcccccceecceEEEe
Q 004609 423 VDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 423 ~~~~~l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~l~~~a~~~~~i~~g~~~~~ 494 (742)
++|++++.+|.+|||||-|+.||.++-..+.+++-. +.+ +.|||++.|-+...+-|+.+..+++|++.-.
T Consensus 614 AIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~-~~~-~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~ 683 (716)
T KOG0058|consen 614 AIARALLRNPRVLILDEATSALDAESEYLVQEALDR-LMQ-GRTVLVIAHRLSTVRHADQIVVIDKGRVVEM 683 (716)
T ss_pred HHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHH-hhc-CCeEEEEehhhhHhhhccEEEEEcCCeEEec
Confidence 999999999999999999999999988877775544 444 4899999999998899999999999998643
|
|
| >COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=8.7e-19 Score=168.38 Aligned_cols=151 Identities=21% Similarity=0.355 Sum_probs=118.9
Q ss_pred EEEeeeeeec-----CCc--ee--cccccccCCceEEEEEeCCCCCcchHHhhHHhhhhhhhhceeecCCCC--------
Q 004609 327 MTVGSLSKGI-----SDF--PV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNH-------- 389 (742)
Q Consensus 327 l~~~nl~~~y-----~~~--~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~lGli~~maq~G~~vPa~~~-------- 389 (742)
+.++|++|+| ++. +| ++||++..| +++++-||+|+||||+||++ .|-|.|.+|.
T Consensus 5 l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aG-ECvvL~G~SG~GKStllr~L--------YaNY~~d~G~I~v~H~g~ 75 (235)
T COG4778 5 LNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAG-ECVVLHGPSGSGKSTLLRSL--------YANYLPDEGQILVRHEGE 75 (235)
T ss_pred eeeecchhheEeeecCCEEeeeeeceeEEecCc-cEEEeeCCCCCcHHHHHHHH--------HhccCCCCceEEEEeCcc
Confidence 4566777777 221 23 899999999 99999999999999999999 7777777762
Q ss_pred -----------------CCchHHH----------------------------------HHHHHcCCcccc-ccccccchH
Q 004609 390 -----------------PRLPWFD----------------------------------LILADIGDHQSL-EQNLSTFSG 417 (742)
Q Consensus 390 -----------------~~i~~~d----------------------------------~il~~ig~~~~~-~~~lstfSg 417 (742)
..++|+. .+++++++...+ .-.++||||
T Consensus 76 ~vdl~~a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSG 155 (235)
T COG4778 76 WVDLVTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSG 155 (235)
T ss_pred hhhhhccChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCC
Confidence 1223322 235555554433 457899999
Q ss_pred HHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChhhh-hhccccccee
Q 004609 418 HIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLS-CLKDKDTRFE 487 (742)
Q Consensus 418 g~k-rl~~~~~l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~l~-~~a~~~~~i~ 487 (742)
|++ |+.+++.++.+-.+|||||||+.||...++.+.+ ++..-+.+|+.++=+-||.+.. ..||+...+.
T Consensus 156 GEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVve-li~e~Ka~GaAlvGIFHDeevre~vadR~~~~~ 226 (235)
T COG4778 156 GEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVE-LIREAKARGAALVGIFHDEEVREAVADRLLDVS 226 (235)
T ss_pred chheehhhhhhhhccCceEEecCCcccccccchHHHHH-HHHHHHhcCceEEEeeccHHHHHHHhhheeecc
Confidence 998 8999999999999999999999999999999988 6777778899999999999865 4777765543
|
|
| >cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.5e-18 Score=175.02 Aligned_cols=160 Identities=20% Similarity=0.189 Sum_probs=106.6
Q ss_pred EEEeeeeeecCCceeccccccc-CCceEEEEEeCCCCCcchHHhhHH--hhhhh---------hhh---------ceeec
Q 004609 327 MTVGSLSKGISDFPVPIDIKVE-CETRVVVITGPNTGGKTASMKTLG--LASLM---------SKA---------GLYLP 385 (742)
Q Consensus 327 l~~~nl~~~y~~~~v~i~l~l~-~g~~~~~ItGpNGsGKSTlLK~lG--li~~m---------aq~---------G~~vP 385 (742)
+.++|.. +|.+. ..++|... +| ++++|+|||||||||+|++|. +.-.. ... -.+++
T Consensus 6 i~l~nf~-~y~~~-~~i~~~~~~~~-~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~~~v~~~f 82 (213)
T cd03279 6 LELKNFG-PFREE-QVIDFTGLDNN-GLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEVSFTF 82 (213)
T ss_pred EEEECCc-CcCCc-eEEeCCCCCcc-CEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCccEEEEEEE
Confidence 5566766 54332 23445433 36 799999999999999999992 11000 000 00111
Q ss_pred CCCCC--------Cch--HHHHH--HHHcCCccccccccccchHHHH-HHHHHHHhcC----------CCcEEEEcCCCC
Q 004609 386 AKNHP--------RLP--WFDLI--LADIGDHQSLEQNLSTFSGHIS-RIVDILELVS----------RESLVLIDEIGS 442 (742)
Q Consensus 386 a~~~~--------~i~--~~d~i--l~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~----------~~~LlLLDEp~~ 442 (742)
+.... .++ .+.+. +...+....+++++.+||+||+ |++++++++. +|+++||||||+
T Consensus 83 ~~~~~~~~~~r~~gl~~~~~~~~~~l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~ 162 (213)
T cd03279 83 QLGGKKYRVERSRGLDYDQFTRIVLLPQGEFDRFLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFG 162 (213)
T ss_pred EECCeEEEEEEecCCCHHHHHHhhhhhhcchHHHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcc
Confidence 11100 001 12221 1222356677899999999999 8999998874 578999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecce
Q 004609 443 GTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAA 490 (742)
Q Consensus 443 glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~ 490 (742)
|+|+.....+.. ++..+.+.+.|+|++||+.+ +..+++....+.+|.
T Consensus 163 ~lD~~~~~~~~~-~l~~~~~~~~tii~itH~~~~~~~~~~~i~~~~~~~ 210 (213)
T cd03279 163 TLDPEALEAVAT-ALELIRTENRMVGVISHVEELKERIPQRLEVIKTPG 210 (213)
T ss_pred cCCHHHHHHHHH-HHHHHHhCCCEEEEEECchHHHHhhCcEEEEEecCC
Confidence 999999999988 45566666889999999988 456777777777664
|
They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini. |
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=99.76 E-value=3e-18 Score=218.63 Aligned_cols=169 Identities=16% Similarity=0.153 Sum_probs=128.5
Q ss_pred CcEEEeeeeeecCC--cee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh------hhhceeecCCCCC-Cc
Q 004609 325 SEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------SKAGLYLPAKNHP-RL 392 (742)
Q Consensus 325 ~~l~~~nl~~~y~~--~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m------aq~G~~vPa~~~~-~i 392 (742)
+.+.++|+++.|++ .++ ++||++++| ++++|+|||||||||||+++ |++.+. .....|+|++... ..
T Consensus 635 ~~i~~~~~~~~~~~~~~~~l~~isl~i~~G-~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~yv~Q~~~l~~~ 713 (1522)
T TIGR00957 635 NSITVHNATFTWARDLPPTLNGITFSIPEG-ALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQAWIQND 713 (1522)
T ss_pred CcEEEEEeEEEcCCCCCceeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECCEEEEEcCCccccCC
Confidence 36899999999974 334 999999999 99999999999999999999 555432 1112467766421 01
Q ss_pred hHHH--------------HHHH------Hc-----CCccccccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCH
Q 004609 393 PWFD--------------LILA------DI-----GDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDP 446 (742)
Q Consensus 393 ~~~d--------------~il~------~i-----g~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLDEp~~glDp 446 (742)
++.+ +++. ++ |+...+..+..+|||||+ |+++|+++..+|+++||||||+++|+
T Consensus 714 Ti~eNI~~g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~ 793 (1522)
T TIGR00957 714 SLRENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDA 793 (1522)
T ss_pred cHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCH
Confidence 1222 2221 11 222345677889999999 99999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH-hcCCcEEEEEecChhhhhhcccccceecceEEEe
Q 004609 447 SEGVALATSILQYL-RDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 447 ~~~~aL~~all~~l-~~~~~~vlitTH~~~l~~~a~~~~~i~~g~~~~~ 494 (742)
.....+...+.... ..++.|+|++||+.+....+|+++.+.+|.+...
T Consensus 794 ~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~~ 842 (1522)
T TIGR00957 794 HVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEM 842 (1522)
T ss_pred HHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCeEEee
Confidence 99999998776421 1236899999999987777999999999987643
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.1e-18 Score=177.09 Aligned_cols=95 Identities=29% Similarity=0.273 Sum_probs=81.6
Q ss_pred HHHcCCcc-ccccccccchHHHH-HHHHHHHhcCC---CcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecC
Q 004609 399 LADIGDHQ-SLEQNLSTFSGHIS-RIVDILELVSR---ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHY 473 (742)
Q Consensus 399 l~~ig~~~-~~~~~lstfSgg~k-rl~~~~~l~~~---~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~ 473 (742)
+..+|+.. .+++.+++|||||+ |+.++++++.+ |+++||||||+|||+.....+.. ++..+.+.|.|+|++||+
T Consensus 153 L~~vgL~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~-~L~~l~~~g~tvIiitH~ 231 (261)
T cd03271 153 LCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLE-VLQRLVDKGNTVVVIEHN 231 (261)
T ss_pred HHHcCCchhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEeCC
Confidence 45677776 57899999999999 89999999885 79999999999999999999998 556677778999999999
Q ss_pred hhhhhhcccccce------ecceEEEe
Q 004609 474 ADLSCLKDKDTRF------ENAATEFS 494 (742)
Q Consensus 474 ~~l~~~a~~~~~i------~~g~~~~~ 494 (742)
+++...+++++.+ .+|++.+.
T Consensus 232 ~~~i~~aD~ii~Lgp~~g~~~G~iv~~ 258 (261)
T cd03271 232 LDVIKCADWIIDLGPEGGDGGGQVVAS 258 (261)
T ss_pred HHHHHhCCEEEEecCCcCCCCCEEEEe
Confidence 9877789999888 67777654
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=3e-18 Score=218.83 Aligned_cols=167 Identities=13% Similarity=0.102 Sum_probs=128.0
Q ss_pred CCcEEEeeeeeecCC--cee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhh-------------------hhh
Q 004609 324 NSEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSK 379 (742)
Q Consensus 324 ~~~l~~~nl~~~y~~--~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~-------------------maq 379 (742)
.|.++++||+++|.+ .+| ++||++++| +.++|+||+||||||+++++ +++.+ +.+
T Consensus 1235 ~g~I~f~nVsf~Y~~~~~~VL~~is~~I~~G-ekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~ 1313 (1622)
T PLN03130 1235 SGSIKFEDVVLRYRPELPPVLHGLSFEISPS-EKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRK 1313 (1622)
T ss_pred CCcEEEEEEEEEeCCCCCceecceeEEEcCC-CEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHh
Confidence 367999999999964 245 999999999 99999999999999999999 44321 223
Q ss_pred hceeecCCCCCCc-hH--------------HHHHHHHcC-----------CccccccccccchHHHH-HHHHHHHhcCCC
Q 004609 380 AGLYLPAKNHPRL-PW--------------FDLILADIG-----------DHQSLEQNLSTFSGHIS-RIVDILELVSRE 432 (742)
Q Consensus 380 ~G~~vPa~~~~~i-~~--------------~d~il~~ig-----------~~~~~~~~lstfSgg~k-rl~~~~~l~~~~ 432 (742)
.-.++||++...- ++ +.+.+...+ .+..+..+.+.|||||+ |+++||+++.+|
T Consensus 1314 ~IsiVpQdp~LF~GTIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p 1393 (1622)
T PLN03130 1314 VLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRS 1393 (1622)
T ss_pred ccEEECCCCccccccHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCC
Confidence 3456777652100 01 112233333 33344455678999999 899999999999
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcccccceecceEEE
Q 004609 433 SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEF 493 (742)
Q Consensus 433 ~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~l~~~a~~~~~i~~g~~~~ 493 (742)
++|||||||+++|+..-..|.+++.+. . .++|+|+++|.++....+|+++.+++|++.-
T Consensus 1394 ~ILILDEATSaLD~~Te~~Iq~~I~~~-~-~~~TvI~IAHRL~tI~~~DrIlVLd~G~IvE 1452 (1622)
T PLN03130 1394 KILVLDEATAAVDVRTDALIQKTIREE-F-KSCTMLIIAHRLNTIIDCDRILVLDAGRVVE 1452 (1622)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHH-C-CCCEEEEEeCChHHHHhCCEEEEEECCEEEE
Confidence 999999999999999988888865554 3 3689999999999777799999999998854
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.3e-18 Score=216.17 Aligned_cols=167 Identities=14% Similarity=0.116 Sum_probs=127.5
Q ss_pred CcEEEeeeeeecCC---cee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh-------hhhceeecCCCCC-
Q 004609 325 SEMTVGSLSKGISD---FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------SKAGLYLPAKNHP- 390 (742)
Q Consensus 325 ~~l~~~nl~~~y~~---~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m-------aq~G~~vPa~~~~- 390 (742)
+.++++|++|+|++ +++ ++||++++| +.++|+||+||||||||++| |...+. .+.-.|+||+...
T Consensus 613 ~~I~~~~vsF~y~~~~~~~vL~~inl~i~~G-e~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~~~Iayv~Q~p~Lf 691 (1495)
T PLN03232 613 PAISIKNGYFSWDSKTSKPTLSDINLEIPVG-SLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIF 691 (1495)
T ss_pred CcEEEEeeEEEcCCCCCCceeeeeEEEEcCC-CEEEEECCCCCcHHHHHHHHhCCCcccCCCEEEecCcEEEEcCccccc
Confidence 46899999999964 344 999999999 99999999999999999999 544332 1223466665411
Q ss_pred CchH--------------HHHHHHHcCC-----------ccccccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCC
Q 004609 391 RLPW--------------FDLILADIGD-----------HQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGT 444 (742)
Q Consensus 391 ~i~~--------------~d~il~~ig~-----------~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLDEp~~gl 444 (742)
.-++ +.+++...++ ...+..+-.+|||||+ |+++||++..+|+++||||||+++
T Consensus 692 ~gTIreNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaL 771 (1495)
T PLN03232 692 NATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSAL 771 (1495)
T ss_pred cccHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCcccc
Confidence 0011 2223332232 2234455668999999 999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcccccceecceEEE
Q 004609 445 DPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEF 493 (742)
Q Consensus 445 Dp~~~~aL~~all~~l~~~~~~vlitTH~~~l~~~a~~~~~i~~g~~~~ 493 (742)
|+..+..+.+.++.... .+.|+|++||.......+|+++.+++|.+..
T Consensus 772 D~~t~~~I~~~~l~~~l-~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~ 819 (1495)
T PLN03232 772 DAHVAHQVFDSCMKDEL-KGKTRVLVTNQLHFLPLMDRIILVSEGMIKE 819 (1495)
T ss_pred CHHHHHHHHHHHhhhhh-cCCEEEEEECChhhHHhCCEEEEEeCCEEEE
Confidence 99999988776665433 4689999999998888899999999998764
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.3e-18 Score=218.07 Aligned_cols=165 Identities=14% Similarity=0.111 Sum_probs=127.3
Q ss_pred CcEEEeeeeeecCC--cee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhh-------------------hhhh
Q 004609 325 SEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKA 380 (742)
Q Consensus 325 ~~l~~~nl~~~y~~--~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~-------------------maq~ 380 (742)
|.++++||+++|++ .++ ++||++++| +.++|+||+||||||+++++ |++.+ +.+.
T Consensus 1233 g~I~f~nVsf~Y~~~~~~vL~~isl~I~~G-ekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~ 1311 (1495)
T PLN03232 1233 GSIKFEDVHLRYRPGLPPVLHGLSFFVSPS-EKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRV 1311 (1495)
T ss_pred CcEEEEEEEEEECCCCCcccccceEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhh
Confidence 57999999999953 345 999999999 99999999999999999999 44422 2233
Q ss_pred ceeecCCCCCCc--hH--------------HHHHHHHcCC-----------ccccccccccchHHHH-HHHHHHHhcCCC
Q 004609 381 GLYLPAKNHPRL--PW--------------FDLILADIGD-----------HQSLEQNLSTFSGHIS-RIVDILELVSRE 432 (742)
Q Consensus 381 G~~vPa~~~~~i--~~--------------~d~il~~ig~-----------~~~~~~~lstfSgg~k-rl~~~~~l~~~~ 432 (742)
-.++||++. -+ ++ +.+.+...++ +..+..+-+.|||||+ |+++||+++.+|
T Consensus 1312 i~iVpQdp~-LF~gTIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~ 1390 (1495)
T PLN03232 1312 LSIIPQSPV-LFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRS 1390 (1495)
T ss_pred cEEECCCCe-eeCccHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCC
Confidence 456777651 11 01 1122333333 3334455678999999 899999999999
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcccccceecceEEE
Q 004609 433 SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEF 493 (742)
Q Consensus 433 ~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~l~~~a~~~~~i~~g~~~~ 493 (742)
++|||||||+++|+..-..+.+++.+. . .++|+|++||.++....+|++..+++|++.-
T Consensus 1391 ~ILILDEATSaLD~~Te~~Iq~~L~~~-~-~~~TvI~IAHRl~ti~~~DrIlVL~~G~ivE 1449 (1495)
T PLN03232 1391 KILVLDEATASVDVRTDSLIQRTIREE-F-KSCTMLVIAHRLNTIIDCDKILVLSSGQVLE 1449 (1495)
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHH-c-CCCEEEEEeCCHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999988888755544 2 3689999999999777799999999998863
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=6.3e-18 Score=215.91 Aligned_cols=167 Identities=16% Similarity=0.155 Sum_probs=128.6
Q ss_pred CcEEEeeeeeecCC---cee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhhh-------hhceeecCCCCC-
Q 004609 325 SEMTVGSLSKGISD---FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS-------KAGLYLPAKNHP- 390 (742)
Q Consensus 325 ~~l~~~nl~~~y~~---~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~ma-------q~G~~vPa~~~~- 390 (742)
+.+.++|++++|++ +++ ++||++++| +.++|+||+||||||||++| |.+.+.. ....|+||+...
T Consensus 613 ~~I~~~nvsf~y~~~~~~~vL~~inl~i~~G-e~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~~Iayv~Q~p~Lf 691 (1622)
T PLN03130 613 PAISIKNGYFSWDSKAERPTLSNINLDVPVG-SLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVPQVSWIF 691 (1622)
T ss_pred CceEEEeeEEEccCCCCCceeeceeEEecCC-CEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcCeEEEEcCccccC
Confidence 46899999999964 344 999999999 99999999999999999999 6554432 123466766521
Q ss_pred CchH--------------HHHHHHHcC-----------CccccccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCC
Q 004609 391 RLPW--------------FDLILADIG-----------DHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGT 444 (742)
Q Consensus 391 ~i~~--------------~d~il~~ig-----------~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLDEp~~gl 444 (742)
.-++ +++++...+ +...+..+-.+|||||| |+++||++..+|+++||||||+++
T Consensus 692 ngTIreNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSAL 771 (1622)
T PLN03130 692 NATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSAL 771 (1622)
T ss_pred CCCHHHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCcccc
Confidence 0011 222333223 23334455678999999 999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcccccceecceEEE
Q 004609 445 DPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEF 493 (742)
Q Consensus 445 Dp~~~~aL~~all~~l~~~~~~vlitTH~~~l~~~a~~~~~i~~g~~~~ 493 (742)
|+..+..+...++..+. ++.|+|++||.......+|+++.+++|.+..
T Consensus 772 D~~~~~~I~~~~l~~~l-~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e 819 (1622)
T PLN03130 772 DAHVGRQVFDKCIKDEL-RGKTRVLVTNQLHFLSQVDRIILVHEGMIKE 819 (1622)
T ss_pred CHHHHHHHHHHHhhHHh-cCCEEEEEECCHhHHHhCCEEEEEeCCEEEE
Confidence 99999888765555443 4789999999999888899999999998864
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.7e-18 Score=216.73 Aligned_cols=158 Identities=17% Similarity=0.204 Sum_probs=120.3
Q ss_pred ecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh------hhhceeecCCCCC-CchHHHHH------
Q 004609 335 GISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------SKAGLYLPAKNHP-RLPWFDLI------ 398 (742)
Q Consensus 335 ~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m------aq~G~~vPa~~~~-~i~~~d~i------ 398 (742)
.++++++ ++||++++| ++++|+|||||||||||++| |++.+. .+...|+|+.... ..++.++|
T Consensus 669 ~~~~~~iL~~isl~i~~G-~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~~~i~yv~Q~~~l~~~Tv~enI~~~~~~ 747 (1560)
T PTZ00243 669 ELEPKVLLRDVSVSVPRG-KLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERSIAYVPQQAWIMNATVRGNILFFDEE 747 (1560)
T ss_pred ccCCceeEeeeEEEECCC-CEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCeEEEEeCCCccCCCcHHHHHHcCChh
Confidence 3444445 999999999 99999999999999999999 555432 1223467776421 11122221
Q ss_pred -----------------HHHc--CCccccccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHH
Q 004609 399 -----------------LADI--GDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQ 458 (742)
Q Consensus 399 -----------------l~~i--g~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLDEp~~glDp~~~~aL~~all~ 458 (742)
+..+ |+...+..+..+|||||+ |++++++++.+|+++||||||++||+..+..+...++.
T Consensus 748 ~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~ 827 (1560)
T PTZ00243 748 DAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFL 827 (1560)
T ss_pred hHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHH
Confidence 1122 455556788999999999 99999999999999999999999999998888765543
Q ss_pred HHhcCCcEEEEEecChhhhhhcccccceecceEEEe
Q 004609 459 YLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 459 ~l~~~~~~vlitTH~~~l~~~a~~~~~i~~g~~~~~ 494 (742)
... .|.|+|++||+.++...+|+++.+.+|.+.+.
T Consensus 828 ~~~-~~~TvIlvTH~~~~~~~ad~ii~l~~G~i~~~ 862 (1560)
T PTZ00243 828 GAL-AGKTRVLATHQVHVVPRADYVVALGDGRVEFS 862 (1560)
T ss_pred Hhh-CCCEEEEEeCCHHHHHhCCEEEEEECCEEEEe
Confidence 333 37899999999997788999999999988654
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=6e-18 Score=215.71 Aligned_cols=166 Identities=13% Similarity=0.165 Sum_probs=128.1
Q ss_pred CCcEEEeeeeeecCC--cee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhh-------------------hhh
Q 004609 324 NSEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSK 379 (742)
Q Consensus 324 ~~~l~~~nl~~~y~~--~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~-------------------maq 379 (742)
.|.+.++||+++|++ ..+ ++||++++| +.++|+|++|||||||++++ |+..+ +.+
T Consensus 1306 ~G~I~f~nVsf~Y~~~~~~vL~~vsf~I~~G-ekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~ 1384 (1560)
T PTZ00243 1306 AGSLVFEGVQMRYREGLPLVLRGVSFRIAPR-EKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRR 1384 (1560)
T ss_pred CCeEEEEEEEEEeCCCCCceeecceEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHh
Confidence 367999999999964 334 999999999 99999999999999999999 44422 234
Q ss_pred hceeecCCCCCCc--hH--------------HHHHHHHcCCcc-----------ccccccccchHHHH-HHHHHHHhcCC
Q 004609 380 AGLYLPAKNHPRL--PW--------------FDLILADIGDHQ-----------SLEQNLSTFSGHIS-RIVDILELVSR 431 (742)
Q Consensus 380 ~G~~vPa~~~~~i--~~--------------~d~il~~ig~~~-----------~~~~~lstfSgg~k-rl~~~~~l~~~ 431 (742)
.-.++||+.. -+ ++ +...+...|+.+ .+..+-+.|||||+ |+++|++++.+
T Consensus 1385 ~I~iVpQdp~-LF~gTIreNIdp~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~ 1463 (1560)
T PTZ00243 1385 QFSMIPQDPV-LFDGTVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKK 1463 (1560)
T ss_pred cceEECCCCc-cccccHHHHhCcccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcC
Confidence 4457777652 11 11 122334444433 23344578999999 89999999995
Q ss_pred -CcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcccccceecceEEE
Q 004609 432 -ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEF 493 (742)
Q Consensus 432 -~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~l~~~a~~~~~i~~g~~~~ 493 (742)
|++|||||||+++|+..-..|..++.+.+ .++|+|+++|..+....+|+++.+++|.+.-
T Consensus 1464 ~~~ILlLDEATSaLD~~te~~Iq~~L~~~~--~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE 1524 (1560)
T PTZ00243 1464 GSGFILMDEATANIDPALDRQIQATVMSAF--SAYTVITIAHRLHTVAQYDKIIVMDHGAVAE 1524 (1560)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHC--CCCEEEEEeccHHHHHhCCEEEEEECCEEEE
Confidence 89999999999999999999888665543 3689999999999888899999999998863
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.7e-18 Score=215.61 Aligned_cols=165 Identities=19% Similarity=0.137 Sum_probs=122.4
Q ss_pred cEEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhhh------hhceeecCCCCC-CchHH
Q 004609 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS------KAGLYLPAKNHP-RLPWF 395 (742)
Q Consensus 326 ~l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~ma------q~G~~vPa~~~~-~i~~~ 395 (742)
.+.++|+++.+ +++ ++||++++| ++++|+|||||||||||++| |++.+.. ....|+|+.... ..++.
T Consensus 428 ~~~~~~~s~~~--~~~l~~i~l~i~~G-~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g~iayv~Q~~~l~~~Ti~ 504 (1490)
T TIGR01271 428 GLFFSNFSLYV--TPVLKNISFKLEKG-QLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGRISFSPQTSWIMPGTIK 504 (1490)
T ss_pred ccccccccccc--CcceeeeEEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEEEEeCCCccCCccHH
Confidence 45566666654 233 999999999 99999999999999999999 5554321 112366665411 01222
Q ss_pred HHHH--------------HHcC-----------CccccccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHH
Q 004609 396 DLIL--------------ADIG-----------DHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEG 449 (742)
Q Consensus 396 d~il--------------~~ig-----------~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLDEp~~glDp~~~ 449 (742)
++|. ...+ +...+..+..+|||||+ |+++|++++.+|+++|||||++++|+..+
T Consensus 505 eNI~~g~~~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~ 584 (1490)
T TIGR01271 505 DNIIFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTE 584 (1490)
T ss_pred HHHHhccccchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHH
Confidence 2221 1111 12234556789999999 99999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCcEEEEEecChhhhhhcccccceecceEEEe
Q 004609 450 VALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 450 ~aL~~all~~l~~~~~~vlitTH~~~l~~~a~~~~~i~~g~~~~~ 494 (742)
..+...++..+.+ +.|+|++||+++....||+++.+.+|.+...
T Consensus 585 ~~i~~~~l~~~~~-~~tvilvtH~~~~~~~ad~ii~l~~g~i~~~ 628 (1490)
T TIGR01271 585 KEIFESCLCKLMS-NKTRILVTSKLEHLKKADKILLLHEGVCYFY 628 (1490)
T ss_pred HHHHHHHHHHHhc-CCeEEEEeCChHHHHhCCEEEEEECCEEEEE
Confidence 9999865555543 7899999999986677999999999987643
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.1e-17 Score=179.07 Aligned_cols=165 Identities=16% Similarity=0.197 Sum_probs=127.6
Q ss_pred cEEEeeeeeecC----Cce-e-cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhhh--------------------
Q 004609 326 EMTVGSLSKGIS----DFP-V-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS-------------------- 378 (742)
Q Consensus 326 ~l~~~nl~~~y~----~~~-v-~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~ma-------------------- 378 (742)
.+.++|++..|+ ... | ++||.+.+| +.++|+|.+|||||++..++ +|+..-+
T Consensus 6 lL~v~nLsV~f~~~~~~~~aVk~isf~i~~G-EtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se 84 (534)
T COG4172 6 LLSIRNLSVAFHQEGGTVEAVKGISFDIEAG-ETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASE 84 (534)
T ss_pred ceeeeccEEEEecCCcceEeeccceeeecCC-CEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCH
Confidence 567889998885 222 3 999999999 99999999999999998888 6664310
Q ss_pred --------hhceeecCCCCCCchHH--------------------------HHHHHHcCCc---cccccccccchHHHH-
Q 004609 379 --------KAGLYLPAKNHPRLPWF--------------------------DLILADIGDH---QSLEQNLSTFSGHIS- 420 (742)
Q Consensus 379 --------q~G~~vPa~~~~~i~~~--------------------------d~il~~ig~~---~~~~~~lstfSgg~k- 420 (742)
.-...+++++...+..+ -.++..+|+. ..++.++..||||++
T Consensus 85 ~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQ 164 (534)
T COG4172 85 RQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQ 164 (534)
T ss_pred HHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhh
Confidence 00112333332222211 1235566654 467899999999999
Q ss_pred HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHH-hcCCcEEEEEecChh-hhhhcccccceecceEE
Q 004609 421 RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYL-RDRVGLAVVTTHYAD-LSCLKDKDTRFENAATE 492 (742)
Q Consensus 421 rl~~~~~l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l-~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~ 492 (742)
|+.++++++++|+|||.||||+.||..-.+.|.+ ++..| .+.|+.++++|||+. +..+||++.+|..|.+.
T Consensus 165 RVMIAMALan~P~lLIADEPTTALDVtvQaQIL~-Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~iv 237 (534)
T COG4172 165 RVMIAMALANEPDLLIADEPTTALDVTVQAQILD-LLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIV 237 (534)
T ss_pred HHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHH-HHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEe
Confidence 8999999999999999999999999999999999 55555 456899999999998 56799999999999875
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=99.74 E-value=8.7e-18 Score=214.50 Aligned_cols=166 Identities=10% Similarity=0.043 Sum_probs=127.7
Q ss_pred CCcEEEeeeeeecCC--cee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhh-------------------hhh
Q 004609 324 NSEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSK 379 (742)
Q Consensus 324 ~~~l~~~nl~~~y~~--~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~-------------------maq 379 (742)
.|.++++||+++|++ .++ ++||++++| +.++|+||+||||||+++++ ++..+ +.+
T Consensus 1282 ~g~I~f~nVsf~Y~~~~~~vL~~is~~I~~G-ekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~ 1360 (1522)
T TIGR00957 1282 RGRVEFRNYCLRYREDLDLVLRHINVTIHGG-EKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRF 1360 (1522)
T ss_pred CCcEEEEEEEEEeCCCCcccccceeEEEcCC-CEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHh
Confidence 367999999999964 345 999999999 99999999999999999999 44322 233
Q ss_pred hceeecCCCCCCc--hH--------------HHHHHHHcCC-----------ccccccccccchHHHH-HHHHHHHhcCC
Q 004609 380 AGLYLPAKNHPRL--PW--------------FDLILADIGD-----------HQSLEQNLSTFSGHIS-RIVDILELVSR 431 (742)
Q Consensus 380 ~G~~vPa~~~~~i--~~--------------~d~il~~ig~-----------~~~~~~~lstfSgg~k-rl~~~~~l~~~ 431 (742)
.-.++||++. -+ ++ +.+.+...++ +..+..+-+.|||||+ |+++||+++.+
T Consensus 1361 ~i~iVpQdp~-LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~ 1439 (1522)
T TIGR00957 1361 KITIIPQDPV-LFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRK 1439 (1522)
T ss_pred cCeEECCCCc-ccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcC
Confidence 3456777752 11 01 1122333332 3334445578999999 89999999999
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcccccceecceEEE
Q 004609 432 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEF 493 (742)
Q Consensus 432 ~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~l~~~a~~~~~i~~g~~~~ 493 (742)
|++|||||||+++|+..-..+.+++.+. . +++|+|+++|..+....+|++..+++|++.-
T Consensus 1440 ~~ILiLDEaTSalD~~Te~~Iq~~l~~~-~-~~~TvI~IAHRl~ti~~~DrIlVld~G~IvE 1499 (1522)
T TIGR00957 1440 TKILVLDEATAAVDLETDNLIQSTIRTQ-F-EDCTVLTIAHRLNTIMDYTRVIVLDKGEVAE 1499 (1522)
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHH-c-CCCEEEEEecCHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999988887755443 2 3689999999999777899999999998863
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.6e-17 Score=211.46 Aligned_cols=166 Identities=17% Similarity=0.185 Sum_probs=128.8
Q ss_pred CCcEEEeeeeeecCC--cee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhh------------------hhhh
Q 004609 324 NSEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL------------------MSKA 380 (742)
Q Consensus 324 ~~~l~~~nl~~~y~~--~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~------------------maq~ 380 (742)
.|.++++||+++|++ .++ ++||++.+| +.++|+|++|||||||+++| |+... +.+.
T Consensus 1215 ~g~I~f~nVs~~Y~~~~~~vL~~is~~I~~G-ekvaIvGrSGsGKSTLl~lL~rl~~~~G~I~IdG~di~~i~~~~lR~~ 1293 (1490)
T TIGR01271 1215 GGQMDVQGLTAKYTEAGRAVLQDLSFSVEGG-QRVGLLGRTGSGKSTLLSALLRLLSTEGEIQIDGVSWNSVTLQTWRKA 1293 (1490)
T ss_pred CCeEEEEEEEEEeCCCCcceeeccEEEEcCC-CEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEcccCCHHHHHhc
Confidence 367999999999964 445 999999999 99999999999999999999 55421 2333
Q ss_pred ceeecCCCCCCch--H--------------HHHHHHHcCCcc-----------ccccccccchHHHH-HHHHHHHhcCCC
Q 004609 381 GLYLPAKNHPRLP--W--------------FDLILADIGDHQ-----------SLEQNLSTFSGHIS-RIVDILELVSRE 432 (742)
Q Consensus 381 G~~vPa~~~~~i~--~--------------~d~il~~ig~~~-----------~~~~~lstfSgg~k-rl~~~~~l~~~~ 432 (742)
-.++||++. -++ + +...+...++.+ .+...-+.|||||+ |+++|++++.+|
T Consensus 1294 is~IpQdp~-LF~GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~ 1372 (1490)
T TIGR01271 1294 FGVIPQKVF-IFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKA 1372 (1490)
T ss_pred eEEEeCCCc-cCccCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCC
Confidence 457888762 111 1 122344444433 23334457999999 899999999999
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcccccceecceEEE
Q 004609 433 SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEF 493 (742)
Q Consensus 433 ~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~l~~~a~~~~~i~~g~~~~ 493 (742)
++|||||||+++|+..-..|...+.+.+ .++|+|++||.++....+|+++.+++|++.-
T Consensus 1373 ~ILlLDEaTS~lD~~Te~~I~~~L~~~~--~~~TvI~IaHRl~ti~~~DrIlvL~~G~ivE 1431 (1490)
T TIGR01271 1373 KILLLDEPSAHLDPVTLQIIRKTLKQSF--SNCTVILSEHRVEALLECQQFLVIEGSSVKQ 1431 (1490)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHc--CCCEEEEEecCHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999888888555442 3689999999998777899999999998853
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.1e-17 Score=172.12 Aligned_cols=77 Identities=25% Similarity=0.232 Sum_probs=65.0
Q ss_pred cccccccchHHHH-HHHHHHHhc----CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhccc
Q 004609 408 LEQNLSTFSGHIS-RIVDILELV----SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDK 482 (742)
Q Consensus 408 ~~~~lstfSgg~k-rl~~~~~l~----~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~l~~~a~~ 482 (742)
.+..+.+|||||+ |++++++++ .+|+++||||||+|+||.....+...+ ..+.+ +.++|++||..++..+|++
T Consensus 152 ~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l-~~~~~-~~~ii~~~h~~~~~~~~d~ 229 (243)
T cd03272 152 EQQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMI-KELSD-GAQFITTTFRPELLEVADK 229 (243)
T ss_pred ccccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHH-HHHhC-CCEEEEEecCHHHHhhCCE
Confidence 3578899999999 899998885 468999999999999999999998855 44555 6788999999888889998
Q ss_pred ccce
Q 004609 483 DTRF 486 (742)
Q Consensus 483 ~~~i 486 (742)
.+.+
T Consensus 230 i~~l 233 (243)
T cd03272 230 FYGV 233 (243)
T ss_pred EEEE
Confidence 7664
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.72 E-value=1e-17 Score=171.57 Aligned_cols=151 Identities=17% Similarity=0.166 Sum_probs=102.2
Q ss_pred EEEeeeeeecCCcee--cccccccCCceEEEEEeCCCCCcchHHhhHHhh------hhh-hhhceeecCCCCC--Cc---
Q 004609 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLA------SLM-SKAGLYLPAKNHP--RL--- 392 (742)
Q Consensus 327 l~~~nl~~~y~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~lGli------~~m-aq~G~~vPa~~~~--~i--- 392 (742)
+.++|.. .|++..+ ++++ ++++|+|||||||||+|++|..+ ... .+.| ++|..+.. .+
T Consensus 6 l~l~nfk-~~~~~~~l~~~~~------~i~~ivGpNGaGKSTll~~i~~~~G~~~~~~~~~~i~-~~~~~~~~~~~~~~~ 77 (212)
T cd03274 6 LVLENFK-SYAGEQVIGPFHK------SFSAIVGPNGSGKSNVIDSMLFVFGFRASKMRQKKLS-DLIHNSAGHPNLDSC 77 (212)
T ss_pred EEEECcc-cCCCCeeeccCCC------CeEEEECCCCCCHHHHHHHHHHHhccCHHHhhhhhHH-HHhcCCCCCCCCceE
Confidence 3444444 5655444 4554 58999999999999999998322 011 1122 22222210 00
Q ss_pred ---hHH-------------------------HHHHHHcCCccccccccccchHHHH-HHHHHHHhc----CCCcEEEEcC
Q 004609 393 ---PWF-------------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELV----SRESLVLIDE 439 (742)
Q Consensus 393 ---~~~-------------------------d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~----~~~~LlLLDE 439 (742)
-+| ..+...+++.+..++.++.||+||+ |+.++++++ .+|++++|||
T Consensus 78 ~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~~~lS~G~~~r~~la~al~~~~~~~p~ililDE 157 (212)
T cd03274 78 SVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNISNLSGGEKTLSSLALVFALHHYKPTPLYVMDE 157 (212)
T ss_pred EEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccchhhcCHHHHHHHHHHHHHHhcccCCCCEEEEcC
Confidence 001 1122333445556778899999999 888888775 3589999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhccccccee
Q 004609 440 IGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFE 487 (742)
Q Consensus 440 p~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~l~~~a~~~~~i~ 487 (742)
||+|+||.....+.. ++..+.+ ++++|++||+.++..+||++..+.
T Consensus 158 Pt~gLD~~~~~~l~~-~l~~~~~-~~~~iivs~~~~~~~~~d~v~~~~ 203 (212)
T cd03274 158 IDAALDFRNVSIVAN-YIKERTK-NAQFIVISLRNNMFELADRLVGIY 203 (212)
T ss_pred CCcCCCHHHHHHHHH-HHHHHcC-CCEEEEEECcHHHHHhCCEEEEEE
Confidence 999999999999998 4555554 678999999988888999877653
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.9e-17 Score=175.03 Aligned_cols=168 Identities=17% Similarity=0.140 Sum_probs=128.4
Q ss_pred CcEEEeeeeeecC---C---------cee-cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhh--------------
Q 004609 325 SEMTVGSLSKGIS---D---------FPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------- 376 (742)
Q Consensus 325 ~~l~~~nl~~~y~---~---------~~v-~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~-------------- 376 (742)
-.++.+++...|. + +.| ++||++.+| +.++|+|.+|||||||=..+ +|+..
T Consensus 275 ~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~g-qTlGlVGESGSGKsTlG~allrL~~s~G~I~F~G~~i~~~ 353 (534)
T COG4172 275 VLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRG-QTLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDIDGL 353 (534)
T ss_pred ceEEecceEEEEecCCccccccchheEEeccceeEecCC-CeEEEEecCCCCcchHHHHHHhhcCcCceEEECCcccccc
Confidence 3677778777662 1 123 899999999 99999999999999997776 44421
Q ss_pred -------hhhhceeecCCCCCCc----hH-----------------------HHHHHHHcCC-ccccccccccchHHHH-
Q 004609 377 -------MSKAGLYLPAKNHPRL----PW-----------------------FDLILADIGD-HQSLEQNLSTFSGHIS- 420 (742)
Q Consensus 377 -------maq~G~~vPa~~~~~i----~~-----------------------~d~il~~ig~-~~~~~~~lstfSgg~k- 420 (742)
+..---.|+++++..+ ++ +-..+..+|+ ....++++..||||++
T Consensus 354 ~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQ 433 (534)
T COG4172 354 SRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQ 433 (534)
T ss_pred ChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhh
Confidence 1111123444443222 21 1234566675 4578999999999999
Q ss_pred HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 421 RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 421 rl~~~~~l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~-~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
|++++++++.+|.+++|||||+.||..-...+.+ ++..|.+ .+.+-+|+|||+. +..+|+.++++.+|.++-.
T Consensus 434 RIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~-LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~GkiVE~ 508 (534)
T COG4172 434 RIAIARALILKPELILLDEPTSALDRSVQAQVLD-LLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQ 508 (534)
T ss_pred HHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHH-HHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCCEEeee
Confidence 9999999999999999999999999999999998 6666654 4778999999998 6679999999999998754
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.7e-17 Score=182.50 Aligned_cols=156 Identities=19% Similarity=0.232 Sum_probs=122.8
Q ss_pred CcEEEeeeeeecCCce--e--cccccccCCceEEEEEeCCCCCcchHHhhHHhhhhhhhhceeecCCC------CCCchH
Q 004609 325 SEMTVGSLSKGISDFP--V--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKN------HPRLPW 394 (742)
Q Consensus 325 ~~l~~~nl~~~y~~~~--v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~lGli~~maq~G~~vPa~~------~~~i~~ 394 (742)
..+.+.+|+|.|.... + .+++..+.. ..++++|+||.||||+||++ .|-.-|..+ ..++.+
T Consensus 361 p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~-sRi~~vg~ng~gkst~lKi~--------~~~l~~~rgi~~~~~r~ri~~ 431 (582)
T KOG0062|consen 361 PNLRISYVAFEYTPSEYQWRKQLGLDRESD-SRISRVGENGDGKSTLLKIL--------KGDLTPTRGIVGRHPRLRIKY 431 (582)
T ss_pred CeeEEEeeeccCCCcchhhhhccCCccchh-hhhheeccCchhHHHHHHHH--------hccCCcccceeeecccceecc
Confidence 3677889999995433 3 666666666 77899999999999999999 332222222 122222
Q ss_pred ------------------------------HHHHHHHcCCc-cccccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCC
Q 004609 395 ------------------------------FDLILADIGDH-QSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGS 442 (742)
Q Consensus 395 ------------------------------~d~il~~ig~~-~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLDEp~~ 442 (742)
+..-+.++|+. +...+++.+|||||+ |+++|.....+|.||+||||||
T Consensus 432 f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTN 511 (582)
T KOG0062|consen 432 FAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTN 511 (582)
T ss_pred hhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEEecCCCc
Confidence 22336677765 445677899999999 9999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEE
Q 004609 443 GTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF 493 (742)
Q Consensus 443 glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~ 493 (742)
+||..+-.+|+.|+-.+ ++-||++|||.+ +..+|...|.+.+|.|.-
T Consensus 512 hLD~dsl~AL~~Al~~F----~GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 512 HLDRDSLGALAKALKNF----NGGVVLVSHDEEFISSLCKELWVVEDGKVTP 559 (582)
T ss_pred cccHHHHHHHHHHHHhc----CCcEEEEECcHHHHhhcCceeEEEcCCcEEe
Confidence 99999999999987776 889999999988 567899999999999864
|
|
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.8e-17 Score=175.49 Aligned_cols=158 Identities=20% Similarity=0.300 Sum_probs=131.0
Q ss_pred cEEEeeeeeecCCc--ee-cccccccCCceEEEEEeCCCCCcchHHhhHHhhhhhhhhceeecCCCCCCc----------
Q 004609 326 EMTVGSLSKGISDF--PV-PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRL---------- 392 (742)
Q Consensus 326 ~l~~~nl~~~y~~~--~v-~i~l~l~~g~~~~~ItGpNGsGKSTlLK~lGli~~maq~G~~vPa~~~~~i---------- 392 (742)
.++++|+.+.|.+. .+ |+|+++.+| +++-|+|.|||||||+++.+ .|+|.|++|...+
T Consensus 322 ~lelrnvrfay~~~~FhvgPiNl~ikrG-elvFliG~NGsGKST~~~LL--------tGL~~PqsG~I~ldg~pV~~e~l 392 (546)
T COG4615 322 TLELRNVRFAYQDNAFHVGPINLTIKRG-ELVFLIGGNGSGKSTLAMLL--------TGLYQPQSGEILLDGKPVSAEQL 392 (546)
T ss_pred ceeeeeeeeccCcccceecceeeEEecC-cEEEEECCCCCcHHHHHHHH--------hcccCCCCCceeECCccCCCCCH
Confidence 68899999999764 24 999999999 99999999999999999999 9999999884322
Q ss_pred ----hHHHHHHHHcC-------Ccc--------------------c-cccc--cccchHHHH-HHHHHHHhcCCCcEEEE
Q 004609 393 ----PWFDLILADIG-------DHQ--------------------S-LEQN--LSTFSGHIS-RIVDILELVSRESLVLI 437 (742)
Q Consensus 393 ----~~~d~il~~ig-------~~~--------------------~-~~~~--lstfSgg~k-rl~~~~~l~~~~~LlLL 437 (742)
+.|..||++.. .++ + -+.. .-.||.||+ |++.+.+++.+++++++
T Consensus 393 edYR~LfSavFsDyhLF~~ll~~e~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~ 472 (546)
T COG4615 393 EDYRKLFSAVFSDYHLFDQLLGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVL 472 (546)
T ss_pred HHHHHHHHHHhhhHhhhHhhhCCccCCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEe
Confidence 12444444432 111 0 1122 335799999 99999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcccccceecceEE
Q 004609 438 DEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATE 492 (742)
Q Consensus 438 DEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~l~~~a~~~~~i~~g~~~ 492 (742)
||=.+.-||.-+..+..-++-.++++|.||+.+|||..-...||+...+.||.+.
T Consensus 473 DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~~ADrll~~~~G~~~ 527 (546)
T COG4615 473 DEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLS 527 (546)
T ss_pred ehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhhhHHHHHHHhcCcee
Confidence 9999999999999999999999999999999999997766778999999999875
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.1e-17 Score=208.69 Aligned_cols=153 Identities=17% Similarity=0.203 Sum_probs=118.4
Q ss_pred cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh-------------------hhhceeecCCCC--CCchH-----
Q 004609 342 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAGLYLPAKNH--PRLPW----- 394 (742)
Q Consensus 342 ~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m-------------------aq~G~~vPa~~~--~~i~~----- 394 (742)
++|+.+.+| ++++|+||||||||||||+| |++..- .+...|+|+... ..+++
T Consensus 183 ~vs~~i~~G-e~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~ 261 (1470)
T PLN03140 183 DASGIIKPS-RMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLD 261 (1470)
T ss_pred CCeEEEeCC-eEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHHHHH
Confidence 999999999 99999999999999999999 554221 111245555431 01111
Q ss_pred --------------------------------------------------HHHHHHHcCCcccc-----ccccccchHHH
Q 004609 395 --------------------------------------------------FDLILADIGDHQSL-----EQNLSTFSGHI 419 (742)
Q Consensus 395 --------------------------------------------------~d~il~~ig~~~~~-----~~~lstfSgg~ 419 (742)
.+.++..+|+.+.. +..+..+||||
T Consensus 262 f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSGGe 341 (1470)
T PLN03140 262 FSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQ 341 (1470)
T ss_pred HHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCccc
Confidence 23355566765433 45678999999
Q ss_pred H-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCh--hhhhhcccccceecceEEEec
Q 004609 420 S-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYA--DLSCLKDKDTRFENAATEFSL 495 (742)
Q Consensus 420 k-rl~~~~~l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~--~l~~~a~~~~~i~~g~~~~~~ 495 (742)
+ |+.++++++.+|++++|||||+|||+.....+...+.+..+..|.|+|++||+. ++..++|++..+.+|++.+..
T Consensus 342 rkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~ivy~G 420 (1470)
T PLN03140 342 KKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQG 420 (1470)
T ss_pred ceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceEEEeC
Confidence 9 999999999999999999999999999999999855443344588999999985 577899999999999998764
|
|
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.2e-17 Score=176.67 Aligned_cols=176 Identities=19% Similarity=0.239 Sum_probs=130.3
Q ss_pred CCCCCCCCCCCCCcEEEeeeeeecC-Ccee--cccccccCCceEEEEEeCCCCCcchHHhhH--------Hhhhh-----
Q 004609 313 SNSNPLKSDVENSEMTVGSLSKGIS-DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL--------GLASL----- 376 (742)
Q Consensus 313 ~~~~~~~~~~~~~~l~~~nl~~~y~-~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l--------Gli~~----- 376 (742)
++..|++.. +|.++++||+|+|. +++| ++||++.+| +.++|+||+|+||||+||.+ |-|.+
T Consensus 526 P~a~pl~~~--~G~i~fsnvtF~Y~p~k~vl~disF~v~pG-ktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdI 602 (790)
T KOG0056|consen 526 PGAPPLKVT--QGKIEFSNVTFAYDPGKPVLSDISFTVQPG-KTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDI 602 (790)
T ss_pred CCCCCcccc--CCeEEEEEeEEecCCCCceeecceEEecCC-cEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchH
Confidence 455666665 48899999999995 4566 999999999 99999999999999999998 22211
Q ss_pred -------hhhhceeecCCCCCCch--H----------------H-----HHHHHHc-CC----ccccccccccchHHHH-
Q 004609 377 -------MSKAGLYLPAKNHPRLP--W----------------F-----DLILADI-GD----HQSLEQNLSTFSGHIS- 420 (742)
Q Consensus 377 -------maq~G~~vPa~~~~~i~--~----------------~-----d~il~~i-g~----~~~~~~~lstfSgg~k- 420 (742)
+.+..+.||++. .-+. + + .+|..+| +. ...+-..--.||||+|
T Consensus 603 rnvt~~SLRs~IGVVPQDt-vLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQ 681 (790)
T KOG0056|consen 603 RNVTQSSLRSSIGVVPQDT-VLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQ 681 (790)
T ss_pred HHHHHHHHHHhcCcccCcc-eeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchh
Confidence 344445788875 1110 0 0 1122222 11 1122233446999999
Q ss_pred HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcccccceecceEEEe
Q 004609 421 RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 421 rl~~~~~l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~l~~~a~~~~~i~~g~~~~~ 494 (742)
|+++++.++..|+++||||.|+.||...-.+|..++- .+.. +.|.|++-|-+.-.-.||.+..+.+|++.-.
T Consensus 682 RVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~-rlca-~RTtIVvAHRLSTivnAD~ILvi~~G~IvEr 753 (790)
T KOG0056|consen 682 RVAIARTILKAPSIILLDEATSALDTNTERAIQAALA-RLCA-NRTTIVVAHRLSTIVNADLILVISNGRIVER 753 (790)
T ss_pred hHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHH-HHhc-CCceEEEeeeehheecccEEEEEeCCeEeec
Confidence 9999999999999999999999999999888877544 4555 4688999999887778999999999988643
|
|
| >cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains | Back alignment and domain information |
|---|
Probab=99.70 E-value=3e-17 Score=167.18 Aligned_cols=138 Identities=21% Similarity=0.188 Sum_probs=95.7
Q ss_pred cccccCCceEEEEEeCCCCCcchHHhhHHhhhhhhhhceeec-------------------------CCC-CC------C
Q 004609 344 DIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLP-------------------------AKN-HP------R 391 (742)
Q Consensus 344 ~l~l~~g~~~~~ItGpNGsGKSTlLK~lGli~~maq~G~~vP-------------------------a~~-~~------~ 391 (742)
++++.+| +++|+||||+||||||+.|.... .|...| +.. .. .
T Consensus 17 ~l~~~~g--~~~i~G~NGsGKTTLl~ai~~~l----~G~~~~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~ 90 (204)
T cd03240 17 EIEFFSP--LTLIVGQNGAGKTTIIEALKYAL----TGELPPNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRS 90 (204)
T ss_pred EEecCCC--eEEEECCCCCCHHHHHHHHHHHH----cCCCCcccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEE
Confidence 4455566 99999999999999999982211 121111 111 00 1
Q ss_pred chHHHHHHHH--cCCccccccccccchHHHHH-------HHHHHHhcCCCcEEEEcCCCCCCCHHHHH-HHHHHHHHHHh
Q 004609 392 LPWFDLILAD--IGDHQSLEQNLSTFSGHISR-------IVDILELVSRESLVLIDEIGSGTDPSEGV-ALATSILQYLR 461 (742)
Q Consensus 392 i~~~d~il~~--ig~~~~~~~~lstfSgg~kr-------l~~~~~l~~~~~LlLLDEp~~glDp~~~~-aL~~all~~l~ 461 (742)
+.+++++... -.....+++.+++||+||++ ++++++++.+|+++|||||++|||+.... .+.. ++..+.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~~-~l~~~~ 169 (204)
T cd03240 91 LAILENVIFCHQGESNWPLLDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAE-IIEERK 169 (204)
T ss_pred hhHhhceeeechHHHHHHHhcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHHH-HHHHHH
Confidence 1334433110 01122447789999999994 46678889999999999999999999999 8888 555555
Q ss_pred cC-CcEEEEEecChhhhhhcccccceec
Q 004609 462 DR-VGLAVVTTHYADLSCLKDKDTRFEN 488 (742)
Q Consensus 462 ~~-~~~vlitTH~~~l~~~a~~~~~i~~ 488 (742)
+. +.++|++||+.++...+++++.+..
T Consensus 170 ~~~~~~iiiitH~~~~~~~~d~i~~l~~ 197 (204)
T cd03240 170 SQKNFQLIVITHDEELVDAADHIYRVEK 197 (204)
T ss_pred hccCCEEEEEEecHHHHhhCCEEEEEee
Confidence 54 7899999999987777887766543
|
The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. |
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.9e-17 Score=205.71 Aligned_cols=152 Identities=16% Similarity=0.142 Sum_probs=118.5
Q ss_pred cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhh----h-----------h-------hhhceeecCCCC--CCchH--
Q 004609 342 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLAS----L-----------M-------SKAGLYLPAKNH--PRLPW-- 394 (742)
Q Consensus 342 ~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~----~-----------m-------aq~G~~vPa~~~--~~i~~-- 394 (742)
++|+.+.+| ++++|+||||||||||||+| |+.. . + .+...|+|+... ..+++
T Consensus 79 ~vs~~i~~G-e~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E 157 (1394)
T TIGR00956 79 PMDGLIKPG-ELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGE 157 (1394)
T ss_pred CCEEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHH
Confidence 899999999 99999999999999999999 5531 0 0 011246666531 01111
Q ss_pred ---------------------------HHHHHHHcCCccccccc-----cccchHHHH-HHHHHHHhcCCCcEEEEcCCC
Q 004609 395 ---------------------------FDLILADIGDHQSLEQN-----LSTFSGHIS-RIVDILELVSRESLVLIDEIG 441 (742)
Q Consensus 395 ---------------------------~d~il~~ig~~~~~~~~-----lstfSgg~k-rl~~~~~l~~~~~LlLLDEp~ 441 (742)
.+.++..+|+.+..+.. +..|||||+ |+.++++++.+|++++|||||
T Consensus 158 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllDEPT 237 (1394)
T TIGR00956 158 TLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNAT 237 (1394)
T ss_pred HHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEeCCC
Confidence 13356667777655543 578999999 999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhc-CCcEEEEEecCh--hhhhhcccccceecceEEEec
Q 004609 442 SGTDPSEGVALATSILQYLRD-RVGLAVVTTHYA--DLSCLKDKDTRFENAATEFSL 495 (742)
Q Consensus 442 ~glDp~~~~aL~~all~~l~~-~~~~vlitTH~~--~l~~~a~~~~~i~~g~~~~~~ 495 (742)
+|||+.....+.. +++.+.+ .|.|+|++||+. ++..++|++..+.+|++.+..
T Consensus 238 sgLD~~~~~~i~~-~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G 293 (1394)
T TIGR00956 238 RGLDSATALEFIR-ALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFG 293 (1394)
T ss_pred CCcCHHHHHHHHH-HHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEEC
Confidence 9999999999998 5556665 588999999995 477899999999999988763
|
|
| >cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.5e-16 Score=166.52 Aligned_cols=77 Identities=12% Similarity=0.079 Sum_probs=65.0
Q ss_pred cccccchHHHH-HHHHHHHhcC----CCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhccccc
Q 004609 410 QNLSTFSGHIS-RIVDILELVS----RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDT 484 (742)
Q Consensus 410 ~~lstfSgg~k-rl~~~~~l~~----~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~l~~~a~~~~ 484 (742)
..+.+||+||+ ++.++++++. +|+++||||||+|+|+.....+.. ++..+.+.|.++|++||+.++..+||+.+
T Consensus 151 ~~~~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~-~i~~~~~~g~~vi~isH~~~~~~~~d~i~ 229 (247)
T cd03275 151 RDMDNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVAS-YIREQAGPNFQFIVISLKEEFFSKADALV 229 (247)
T ss_pred hhHHHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHH-HHHHhccCCcEEEEEECCHHHHhhCCeEE
Confidence 34589999999 8888888875 489999999999999999999998 45556666889999999988888898876
Q ss_pred cee
Q 004609 485 RFE 487 (742)
Q Consensus 485 ~i~ 487 (742)
.+.
T Consensus 230 ~~~ 232 (247)
T cd03275 230 GVY 232 (247)
T ss_pred EEE
Confidence 654
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.68 E-value=2e-16 Score=165.91 Aligned_cols=80 Identities=14% Similarity=0.118 Sum_probs=67.0
Q ss_pred cccccccccchHHHH-HHHHHHHhc----CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhc
Q 004609 406 QSLEQNLSTFSGHIS-RIVDILELV----SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLK 480 (742)
Q Consensus 406 ~~~~~~lstfSgg~k-rl~~~~~l~----~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~l~~~a 480 (742)
+..+..+.+||+||+ |++++++++ .+|+++|+||||+|+|+.....+.. ++..+.+ |.++|++||+.++...|
T Consensus 158 ~~~~~~~~~lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~-~l~~~~~-g~~ii~iSH~~~~~~~~ 235 (251)
T cd03273 158 GVWKESLTELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGR-MIKTHFK-GSQFIVVSLKEGMFNNA 235 (251)
T ss_pred HhhcccccccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHH-HHHHHcC-CCEEEEEECCHHHHHhC
Confidence 345678999999999 888888876 6789999999999999999999998 4444544 78999999998888889
Q ss_pred cccccee
Q 004609 481 DKDTRFE 487 (742)
Q Consensus 481 ~~~~~i~ 487 (742)
|+.+.+.
T Consensus 236 d~v~~~~ 242 (251)
T cd03273 236 NVLFRTR 242 (251)
T ss_pred CEEEEEE
Confidence 9886643
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.1e-16 Score=155.70 Aligned_cols=159 Identities=19% Similarity=0.195 Sum_probs=126.6
Q ss_pred EEEeeeeeecCC----------cee-cccccccCCceEEEEEeCCCCCcchHHhhHHhhhhhhhhceeecCCCC------
Q 004609 327 MTVGSLSKGISD----------FPV-PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNH------ 389 (742)
Q Consensus 327 l~~~nl~~~y~~----------~~v-~i~l~l~~g~~~~~ItGpNGsGKSTlLK~lGli~~maq~G~~vPa~~~------ 389 (742)
++++|++|.|.. ..| ++||++..| ..++|+|.||||||||.|++ +|+..|.+|.
T Consensus 5 LeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~-QTlaiIG~NGSGKSTLakMl--------aGmi~PTsG~il~n~~ 75 (267)
T COG4167 5 LEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREG-QTLAIIGENGSGKSTLAKML--------AGMIEPTSGEILINDH 75 (267)
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCC-cEEEEEccCCCcHhHHHHHH--------hcccCCCCceEEECCc
Confidence 356677776632 123 999999999 89999999999999999999 5555555541
Q ss_pred ----------------------CCchH-----------------------HHHH---HHHcCC-ccccccccccchHHHH
Q 004609 390 ----------------------PRLPW-----------------------FDLI---LADIGD-HQSLEQNLSTFSGHIS 420 (742)
Q Consensus 390 ----------------------~~i~~-----------------------~d~i---l~~ig~-~~~~~~~lstfSgg~k 420 (742)
..+.. -.+| +..+|+ .+..+-++..+|.|++
T Consensus 76 ~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QK 155 (267)
T COG4167 76 PLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQK 155 (267)
T ss_pred cccccchHhhhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhH
Confidence 11110 0122 344553 4667888999999999
Q ss_pred -HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 421 -RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 421 -rl~~~~~l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
|+++++++.-+|+++|.||..++||..-+..|...+++.-.+.|...|.+|.+.. ++.++|.+++++.|.|.-.
T Consensus 156 QRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~ 231 (267)
T COG4167 156 QRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVER 231 (267)
T ss_pred HHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCceeec
Confidence 9999999999999999999999999999999999888766667888899998877 7889999999999988754
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=2e-16 Score=185.07 Aligned_cols=151 Identities=23% Similarity=0.315 Sum_probs=124.5
Q ss_pred cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhh-------------------hhhhceeecCCCCCCch--------
Q 004609 342 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKAGLYLPAKNHPRLP-------- 393 (742)
Q Consensus 342 ~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~-------------------maq~G~~vPa~~~~~i~-------- 393 (742)
+++..+.+| ++++|.||.||||||||+++ |...- +.++-.||+|+. ..+|
T Consensus 48 ~vsg~~~~G-el~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD-~l~~~LTV~EtL 125 (613)
T KOG0061|consen 48 GVSGTAKPG-ELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDD-VLLPTLTVRETL 125 (613)
T ss_pred CcEEEEecC-eEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccc-cccccccHHHHH
Confidence 999999999 99999999999999999999 33311 223345777665 1111
Q ss_pred -------------------HHHHHHHHcCCccccccccc-----cchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHH
Q 004609 394 -------------------WFDLILADIGDHQSLEQNLS-----TFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSE 448 (742)
Q Consensus 394 -------------------~~d~il~~ig~~~~~~~~ls-----tfSgg~k-rl~~~~~l~~~~~LlLLDEp~~glDp~~ 448 (742)
.++.++..+|+.+-.+..++ .+||||+ |++++..++++|++++|||||+|||...
T Consensus 126 ~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGLDS~s 205 (613)
T KOG0061|consen 126 RFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGLDSFS 205 (613)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCCcchhh
Confidence 26778889998866666665 5999999 9999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEecChh--hhhhcccccceecceEEEec
Q 004609 449 GVALATSILQYLRDRVGLAVVTTHYAD--LSCLKDKDTRFENAATEFSL 495 (742)
Q Consensus 449 ~~aL~~all~~l~~~~~~vlitTH~~~--l~~~a~~~~~i~~g~~~~~~ 495 (742)
...+.. +++.+++.|.|||+|-|... +-.+-|+...+.+|.+.|..
T Consensus 206 A~~vv~-~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G 253 (613)
T KOG0061|consen 206 ALQVVQ-LLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSG 253 (613)
T ss_pred HHHHHH-HHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEec
Confidence 999998 66667777999999999964 77888999999999998874
|
|
| >COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.4e-17 Score=156.73 Aligned_cols=152 Identities=18% Similarity=0.252 Sum_probs=114.0
Q ss_pred ecccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhh------------------hhhhceeecCCC--CCCch------
Q 004609 341 VPIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL------------------MSKAGLYLPAKN--HPRLP------ 393 (742)
Q Consensus 341 v~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~------------------maq~G~~vPa~~--~~~i~------ 393 (742)
.|+|..+..| +++=++||||+||||||-.+ |++.. +|+.-.|..+.. ...++
T Consensus 16 ~plS~qv~aG-e~~HliGPNGaGKSTLLA~lAGm~~~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~YL~ 94 (248)
T COG4138 16 GPLSGEVRAG-EILHLVGPNGAGKSTLLARMAGMTSGSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHYLT 94 (248)
T ss_pred cccccccccc-eEEEEECCCCccHHHHHHHHhCCCCCCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhhhhh
Confidence 3999999999 99999999999999999888 55431 111111111111 11222
Q ss_pred ----------HHHHHHHHcCCccccccccccchHHHH-HHHHHHHhc-----CC--CcEEEEcCCCCCCCHHHHHHHHHH
Q 004609 394 ----------WFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELV-----SR--ESLVLIDEIGSGTDPSEGVALATS 455 (742)
Q Consensus 394 ----------~~d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~-----~~--~~LlLLDEp~~glDp~~~~aL~~a 455 (742)
.++.|...+++.|.+.+.++.||||+= |+.++...+ -+ ..|+|+|||.++||.....+|-.
T Consensus 95 L~qP~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdr- 173 (248)
T COG4138 95 LHQPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDR- 173 (248)
T ss_pred hcCchHHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHHHH-
Confidence 245667778899999999999999986 766663321 12 35999999999999988887765
Q ss_pred HHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 456 ILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 456 ll~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
++..+...|.+|||++||++ -.+-+++.+.+..|.+...
T Consensus 174 ll~~~c~~G~~vims~HDLNhTLrhA~~~wLL~rG~l~~~ 213 (248)
T COG4138 174 LLSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLAS 213 (248)
T ss_pred HHHHHHhCCcEEEEeccchhhHHHHHHHHHHHhcCeEEee
Confidence 88889999999999999987 5567888888888877554
|
|
| >cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.5e-16 Score=158.60 Aligned_cols=143 Identities=17% Similarity=0.136 Sum_probs=94.1
Q ss_pred cccccccCCceEEEEEeCCCCCcchHHhhHHhhhh--------------hhhhce------eecCCCC---CCchHH--H
Q 004609 342 PIDIKVECETRVVVITGPNTGGKTASMKTLGLASL--------------MSKAGL------YLPAKNH---PRLPWF--D 396 (742)
Q Consensus 342 ~i~l~l~~g~~~~~ItGpNGsGKSTlLK~lGli~~--------------maq~G~------~vPa~~~---~~i~~~--d 396 (742)
++++++.+| +.+|+||||+||||+|..|.+... +-+.|. ..+..+. ...... +
T Consensus 14 ~~~l~f~~g--l~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 91 (198)
T cd03276 14 HLQIEFGPR--VNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDANPLCVLSQD 91 (198)
T ss_pred eeEEecCCC--eEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCCCCeEEEEEEEEcCCccCCcCCHHHHH
Confidence 455666665 789999999999999999843210 000010 0111100 001111 1
Q ss_pred HHHHHcCCccccccccccchHHHH-HHHHHHHh----cCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhc--CCcEEEE
Q 004609 397 LILADIGDHQSLEQNLSTFSGHIS-RIVDILEL----VSRESLVLIDEIGSGTDPSEGVALATSILQYLRD--RVGLAVV 469 (742)
Q Consensus 397 ~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l----~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~--~~~~vli 469 (742)
.+...+...+..++++.+||+||+ |+.+++++ +.+|+++|||||++|+|+.....+...+.+...+ .+.++|+
T Consensus 92 ~~~~~l~~~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii 171 (198)
T cd03276 92 MARSFLTSNKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFI 171 (198)
T ss_pred HHHHHhccccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 222222335567889999999999 78888877 6999999999999999999999999966665444 2358999
Q ss_pred EecChhhhhhcccccce
Q 004609 470 TTHYADLSCLKDKDTRF 486 (742)
Q Consensus 470 tTH~~~l~~~a~~~~~i 486 (742)
+||+++...-.|++..+
T Consensus 172 ~th~~~~i~~~d~v~~~ 188 (198)
T cd03276 172 TPQDISGLASSDDVKVF 188 (198)
T ss_pred ECCcccccccccceeEE
Confidence 99998744333544333
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.1e-16 Score=188.50 Aligned_cols=168 Identities=17% Similarity=0.187 Sum_probs=124.8
Q ss_pred CCcEEEeeeeeecCCce---e--cccccccCCceEEEEEeCCCCCcchHHhhH--------Hhhhh------------hh
Q 004609 324 NSEMTVGSLSKGISDFP---V--PIDIKVECETRVVVITGPNTGGKTASMKTL--------GLASL------------MS 378 (742)
Q Consensus 324 ~~~l~~~nl~~~y~~~~---v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l--------Gli~~------------ma 378 (742)
+|.++++||+|.|..++ | ++|+++..| +.++|+||+||||||.+-+| |-+.+ +.
T Consensus 985 ~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~G-qTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR 1063 (1228)
T KOG0055|consen 985 KGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAG-QTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLR 1063 (1228)
T ss_pred eeEEEEeeeEeeCCCCCCchhhcCCcEEecCC-CEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHH
Confidence 46799999999997654 3 999999999 99999999999999999888 11110 12
Q ss_pred hhceeecCCCCC-CchHHHHHHH---------------------Hc-----CCccccccccccchHHHH-HHHHHHHhcC
Q 004609 379 KAGLYLPAKNHP-RLPWFDLILA---------------------DI-----GDHQSLEQNLSTFSGHIS-RIVDILELVS 430 (742)
Q Consensus 379 q~G~~vPa~~~~-~i~~~d~il~---------------------~i-----g~~~~~~~~lstfSgg~k-rl~~~~~l~~ 430 (742)
+.-..|.|++.- .-++.++|.- -+ |.+-.+-..-..|||||| |+++||+++.
T Consensus 1064 ~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilR 1143 (1228)
T KOG0055|consen 1064 KQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILR 1143 (1228)
T ss_pred HhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHc
Confidence 222234444310 0011222211 00 222334455678999999 9999999999
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcccccceecceEEEe
Q 004609 431 RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 431 ~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~l~~~a~~~~~i~~g~~~~~ 494 (742)
+|++|||||-|+.||.++-..+-+| ++.... |.|+|++.|-+...+.||.+.++.||.+.-.
T Consensus 1144 nPkILLLDEATSALDseSErvVQeA-Ld~a~~-gRT~IvIAHRLSTIqnaD~I~Vi~~G~VvE~ 1205 (1228)
T KOG0055|consen 1144 NPKILLLDEATSALDSESERVVQEA-LDRAME-GRTTIVIAHRLSTIQNADVIAVLKNGKVVEQ 1205 (1228)
T ss_pred CCCeeeeeccchhhhhhhHHHHHHH-HHHhhc-CCcEEEEecchhhhhcCCEEEEEECCEEEec
Confidence 9999999999999999998888774 444444 7899999999999999999999999988643
|
|
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.1e-16 Score=151.56 Aligned_cols=100 Identities=27% Similarity=0.486 Sum_probs=73.6
Q ss_pred cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhh-------------------hhhhceeecCCCC--CCch------
Q 004609 342 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKAGLYLPAKNH--PRLP------ 393 (742)
Q Consensus 342 ~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~-------------------maq~G~~vPa~~~--~~i~------ 393 (742)
++|+++.+| ++++|+|||||||||||++| |+..+ ..+...++|+... ..+.
T Consensus 3 ~v~~~i~~g-~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~~~ 81 (137)
T PF00005_consen 3 NVSLEIKPG-EIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVRENES 81 (137)
T ss_dssp EEEEEEETT-SEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHHHH
T ss_pred ceEEEEcCC-CEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 578999999 99999999999999999999 44432 1222334444421 1111
Q ss_pred --HHHHHHHHcCCcccccccc----ccchHHHH-HHHHHHHhcCCCcEEEEcCCCC
Q 004609 394 --WFDLILADIGDHQSLEQNL----STFSGHIS-RIVDILELVSRESLVLIDEIGS 442 (742)
Q Consensus 394 --~~d~il~~ig~~~~~~~~l----stfSgg~k-rl~~~~~l~~~~~LlLLDEp~~ 442 (742)
.++.++..++..+..+..+ +.||+||+ |+.++++++.+|+++||||||+
T Consensus 82 ~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 82 DERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp HHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred cccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 1344666777555444444 99999999 8999999999999999999996
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=7e-16 Score=167.51 Aligned_cols=149 Identities=24% Similarity=0.309 Sum_probs=113.7
Q ss_pred EeeeeeecCCceeccc-ccccCCceEEEEEeCCCCCcchHHhhHHhhhhhhhhceeecCCCC---CCch-----------
Q 004609 329 VGSLSKGISDFPVPID-IKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNH---PRLP----------- 393 (742)
Q Consensus 329 ~~nl~~~y~~~~v~i~-l~l~~g~~~~~ItGpNGsGKSTlLK~lGli~~maq~G~~vPa~~~---~~i~----------- 393 (742)
-.++.+.||+-...++ =++..| ++++++||||-|||||.|++ +|...|.++. ..++
T Consensus 345 y~~~~k~~g~F~L~V~~G~i~~g-EvigilGpNgiGKTTFvk~L--------AG~ikPdeg~~~~~~vSyKPQyI~~~~~ 415 (591)
T COG1245 345 YPDLKKTYGDFKLEVEEGEIYDG-EVIGILGPNGIGKTTFVKLL--------AGVIKPDEGSEEDLKVSYKPQYISPDYD 415 (591)
T ss_pred cchheeecCceEEEecCCeeecc-eEEEEECCCCcchHHHHHHH--------hccccCCCCCCccceEeecceeecCCCC
Confidence 3456667765333222 134456 99999999999999999999 6666665541 0000
Q ss_pred -------------------HHHHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHH
Q 004609 394 -------------------WFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALA 453 (742)
Q Consensus 394 -------------------~~d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLDEp~~glDp~~~~aL~ 453 (742)
+...++.-+++++.+++.+..||||+. |++++.+++.+.+|.|||||.++||...+...+
T Consensus 416 gtV~~~l~~~~~~~~~~s~~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~va 495 (591)
T COG1245 416 GTVEDLLRSAIRSAFGSSYFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVA 495 (591)
T ss_pred CcHHHHHHHhhhhhcccchhHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHH
Confidence 122345556677889999999999987 999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCcEEEEEecChhhhh-hcccccce
Q 004609 454 TSILQYLRDRVGLAVVTTHYADLSC-LKDKDTRF 486 (742)
Q Consensus 454 ~all~~l~~~~~~vlitTH~~~l~~-~a~~~~~i 486 (742)
.+|-+.....+.+.+++-||..+.. ++|+.+.|
T Consensus 496 kvIRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF 529 (591)
T COG1245 496 KVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVF 529 (591)
T ss_pred HHHHHHHhhcCceEEEEecceehhhhhhceEEEE
Confidence 9888877778899999999987554 45655444
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.8e-15 Score=180.93 Aligned_cols=95 Identities=28% Similarity=0.250 Sum_probs=80.8
Q ss_pred HHHcCCcc-ccccccccchHHHH-HHHHHHHhcC---CCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecC
Q 004609 399 LADIGDHQ-SLEQNLSTFSGHIS-RIVDILELVS---RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHY 473 (742)
Q Consensus 399 l~~ig~~~-~~~~~lstfSgg~k-rl~~~~~l~~---~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~ 473 (742)
+..+|+.. .+++++++|||||+ |+.++++++. +|.++||||||+|||+.+...|.. ++..+.+.|.|+|++||+
T Consensus 812 L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~-~L~~l~~~G~TVIvi~H~ 890 (924)
T TIGR00630 812 LCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLE-VLQRLVDQGNTVVVIEHN 890 (924)
T ss_pred HHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEeCC
Confidence 45567765 47899999999999 8999999886 589999999999999999999999 455566778999999999
Q ss_pred hhhhhhcccccce------ecceEEEe
Q 004609 474 ADLSCLKDKDTRF------ENAATEFS 494 (742)
Q Consensus 474 ~~l~~~a~~~~~i------~~g~~~~~ 494 (742)
+++...+++++.+ .+|.+.+.
T Consensus 891 ~~~i~~aD~ii~Lgp~~G~~gG~iv~~ 917 (924)
T TIGR00630 891 LDVIKTADYIIDLGPEGGDGGGTIVAS 917 (924)
T ss_pred HHHHHhCCEEEEecCCccCCCCEEEEe
Confidence 9877789999888 57777664
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.1e-15 Score=179.03 Aligned_cols=95 Identities=26% Similarity=0.252 Sum_probs=81.8
Q ss_pred HHHcCCcc-ccccccccchHHHH-HHHHHHHhcCCC---cEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecC
Q 004609 399 LADIGDHQ-SLEQNLSTFSGHIS-RIVDILELVSRE---SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHY 473 (742)
Q Consensus 399 l~~ig~~~-~~~~~lstfSgg~k-rl~~~~~l~~~~---~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~ 473 (742)
+..+|+.. .+++.+++|||||+ |+.++++++.+| .++||||||+|||+.+...|.. ++..+.+.|.|+|++||+
T Consensus 814 L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~-~L~~l~~~G~TVIiitH~ 892 (943)
T PRK00349 814 LVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLE-VLHRLVDKGNTVVVIEHN 892 (943)
T ss_pred HHHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEecC
Confidence 45567765 57889999999999 899999999998 9999999999999999999998 555667778999999999
Q ss_pred hhhhhhcccccce------ecceEEEe
Q 004609 474 ADLSCLKDKDTRF------ENAATEFS 494 (742)
Q Consensus 474 ~~l~~~a~~~~~i------~~g~~~~~ 494 (742)
.++...+++++.+ .+|.+.+.
T Consensus 893 ~~~i~~aD~ii~Lgp~~G~~~G~Iv~~ 919 (943)
T PRK00349 893 LDVIKTADWIIDLGPEGGDGGGEIVAT 919 (943)
T ss_pred HHHHHhCCEEEEecCCcCCCCCEEEEe
Confidence 9876789999888 57777654
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.1e-14 Score=183.25 Aligned_cols=96 Identities=24% Similarity=0.237 Sum_probs=81.6
Q ss_pred HHHHcCCccc-cccccccchHHHH-HHHHHHHhc---CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEec
Q 004609 398 ILADIGDHQS-LEQNLSTFSGHIS-RIVDILELV---SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTH 472 (742)
Q Consensus 398 il~~ig~~~~-~~~~lstfSgg~k-rl~~~~~l~---~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH 472 (742)
.+..+|+... +++.+.+|||||+ |+.++++++ .+|+++||||||+|||+.+...+.. ++..+.+.|.|+|++||
T Consensus 792 ~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~-lL~~L~~~G~TVIiIsH 870 (1809)
T PRK00635 792 ALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIY-VLQSLTHQGHTVVIIEH 870 (1809)
T ss_pred HHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhcCCEEEEEeC
Confidence 3556788765 7899999999999 899999986 6999999999999999999999998 55667777899999999
Q ss_pred Chhhhhhccccccee------cceEEEe
Q 004609 473 YADLSCLKDKDTRFE------NAATEFS 494 (742)
Q Consensus 473 ~~~l~~~a~~~~~i~------~g~~~~~ 494 (742)
+++...++|++..+. +|.+...
T Consensus 871 dl~~i~~aDrVi~L~p~gg~~~G~iv~~ 898 (1809)
T PRK00635 871 NMHVVKVADYVLELGPEGGNLGGYLLAS 898 (1809)
T ss_pred CHHHHHhCCEEEEEccCCCCCCCEEEEe
Confidence 998668999998885 5566543
|
|
| >KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.3e-14 Score=143.72 Aligned_cols=167 Identities=17% Similarity=0.227 Sum_probs=122.9
Q ss_pred CCCcEEEeeeeeecCC-cee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hh-------hhhhhhhce---------
Q 004609 323 ENSEMTVGSLSKGISD-FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GL-------ASLMSKAGL--------- 382 (742)
Q Consensus 323 ~~~~l~~~nl~~~y~~-~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gl-------i~~maq~G~--------- 382 (742)
++..++++++.|.|.. .++ ++|+.++.| ....++|.||+|||||||++ |- +..+...-+
T Consensus 10 ~~~aievsgl~f~y~~~dP~~~Dfnldlp~g-sRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sg 88 (291)
T KOG2355|consen 10 SDFAIEVSGLQFKYKVSDPIFFDFNLDLPAG-SRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSG 88 (291)
T ss_pred ccceEEEeccEEecccCCceEEEEeeccCCC-ceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccC
Confidence 3468999999999943 343 999999999 88899999999999999999 21 111111000
Q ss_pred -----------------eecCCCCCCchHHHHHHHHcC-Cc------------cccccccccchHHHH-HHHHHHHhcCC
Q 004609 383 -----------------YLPAKNHPRLPWFDLILADIG-DH------------QSLEQNLSTFSGHIS-RIVDILELVSR 431 (742)
Q Consensus 383 -----------------~vPa~~~~~i~~~d~il~~ig-~~------------~~~~~~lstfSgg~k-rl~~~~~l~~~ 431 (742)
-+|-.+ .++.- .++..+| +. -++.=.....|-||+ |+.+++.++.+
T Consensus 89 dl~YLGgeW~~~~~~agevplq~--D~sae-~mifgV~g~dp~Rre~LI~iLDIdl~WRmHkvSDGqrRRVQicMGLL~P 165 (291)
T KOG2355|consen 89 DLSYLGGEWSKTVGIAGEVPLQG--DISAE-HMIFGVGGDDPERREKLIDILDIDLRWRMHKVSDGQRRRVQICMGLLKP 165 (291)
T ss_pred ceeEecccccccccccccccccc--cccHH-HHHhhccCCChhHhhhhhhheeccceEEEeeccccchhhhHHHHhcccc
Confidence 111111 11111 1222222 11 123335678899999 78888999999
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEE
Q 004609 432 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF 493 (742)
Q Consensus 432 ~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~ 493 (742)
=.+|||||.|-.||...++.|...+.+..-.+|+||+.+||..+ +...+.+...+.+|.+..
T Consensus 166 fkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~ 228 (291)
T KOG2355|consen 166 FKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETWPTHLVYIKSGKLVD 228 (291)
T ss_pred eeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhhcchhEEEecCCeeee
Confidence 99999999999999999999999777777788999999999977 899999999999998764
|
|
| >cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.1e-14 Score=143.31 Aligned_cols=73 Identities=16% Similarity=0.140 Sum_probs=61.5
Q ss_pred chHHHH-HHHHHHHhc----CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcccccceec
Q 004609 415 FSGHIS-RIVDILELV----SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFEN 488 (742)
Q Consensus 415 fSgg~k-rl~~~~~l~----~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~l~~~a~~~~~i~~ 488 (742)
||+||+ ++.++++++ .+|+++|+|||++|+|+.....+... +..+.+.|.++|++||+.++...+++.+.+..
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~-L~~~~~~g~tiIiiSH~~~~~~~adrvi~i~~ 172 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDM-IKEMAKHTSQFIVITLKKEMFENADKLIGVLF 172 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHH-HHHHHhCCCEEEEEECCHHHHhhCCeEEEEEE
Confidence 999999 888888774 78999999999999999999999984 44555557899999999987778888776553
|
SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression. |
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.5e-14 Score=155.63 Aligned_cols=125 Identities=26% Similarity=0.314 Sum_probs=102.7
Q ss_pred cCCceEEEEEeCCCCCcchHHhhHHhhhhhhhhceeecCCCCCC------------------------------------
Q 004609 348 ECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPR------------------------------------ 391 (742)
Q Consensus 348 ~~g~~~~~ItGpNGsGKSTlLK~lGli~~maq~G~~vPa~~~~~------------------------------------ 391 (742)
.+| .+++|+||||-||||.+|++ +|-.+|.-|...
T Consensus 98 r~G-~V~GilG~NGiGKsTalkIL--------aGel~PNLG~~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~Q 168 (591)
T COG1245 98 RPG-KVVGILGPNGIGKSTALKIL--------AGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQ 168 (591)
T ss_pred CCC-cEEEEEcCCCccHHHHHHHH--------hCccccCCCCCCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchH
Confidence 357 89999999999999999999 666666544100
Q ss_pred ----------------------chHHHHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHH
Q 004609 392 ----------------------LPWFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSE 448 (742)
Q Consensus 392 ----------------------i~~~d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLDEp~~glDp~~ 448 (742)
-+.+|.+...+++...+++.++.||||+. |++++.+++.+.++.++|||++-||..+
T Consensus 169 YVd~iPk~~KG~v~elLk~~de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~rdADvY~FDEpsSyLDi~q 248 (591)
T COG1245 169 YVDLIPKVVKGKVGELLKKVDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQ 248 (591)
T ss_pred HHHHHHHHhcchHHHHHHhhhhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHhccCCEEEEcCCcccccHHH
Confidence 01255667788888999999999999987 9999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEecChhhh-hhccc
Q 004609 449 GVALATSILQYLRDRVGLAVVTTHYADLS-CLKDK 482 (742)
Q Consensus 449 ~~aL~~all~~l~~~~~~vlitTH~~~l~-~~a~~ 482 (742)
+...+. +++.+.+.+.+||++.||+.+. .++|.
T Consensus 249 Rl~~ar-~Irel~~~~k~ViVVEHDLavLD~lsD~ 282 (591)
T COG1245 249 RLNAAR-VIRELAEDGKYVIVVEHDLAVLDYLSDF 282 (591)
T ss_pred HHHHHH-HHHHHhccCCeEEEEechHHHHHHhhhe
Confidence 999999 5556666688999999998743 34443
|
|
| >cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.1e-14 Score=147.33 Aligned_cols=75 Identities=17% Similarity=0.165 Sum_probs=56.3
Q ss_pred cccccccchHHHHHHHHHH-----HhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCC-cEEEEEecChh-hhhhc
Q 004609 408 LEQNLSTFSGHISRIVDIL-----ELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRV-GLAVVTTHYAD-LSCLK 480 (742)
Q Consensus 408 ~~~~lstfSgg~krl~~~~-----~l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~-~~vlitTH~~~-l~~~a 480 (742)
...++.+||+||+++..+. .++.+|+++|+|||++|+||.....+...+.+...+.| .++|++||++. ...++
T Consensus 120 ~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~~~ 199 (213)
T cd03277 120 QELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLNYH 199 (213)
T ss_pred cccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCccc
Confidence 4567889999999654432 23689999999999999999999999985555433324 47999999964 55555
Q ss_pred cc
Q 004609 481 DK 482 (742)
Q Consensus 481 ~~ 482 (742)
++
T Consensus 200 ~~ 201 (213)
T cd03277 200 EK 201 (213)
T ss_pred Cc
Confidence 53
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.3e-15 Score=159.86 Aligned_cols=162 Identities=19% Similarity=0.237 Sum_probs=112.0
Q ss_pred EEeeeeeecCC--ceecccccccCCceEEEEEeCCCCCcchHHhhHHhhhh--hhhhce-----eecCCCCCCch-----
Q 004609 328 TVGSLSKGISD--FPVPIDIKVECETRVVVITGPNTGGKTASMKTLGLASL--MSKAGL-----YLPAKNHPRLP----- 393 (742)
Q Consensus 328 ~~~nl~~~y~~--~~v~i~l~l~~g~~~~~ItGpNGsGKSTlLK~lGli~~--maq~G~-----~vPa~~~~~i~----- 393 (742)
.++|.+.+-.+ -+++-|+.|-.| +.++++||||-|||||||-||--.+ -..+-. -|-++..+-+.
T Consensus 266 KiEnF~ISA~Gk~LFvnA~L~Iv~G-RRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~tvl~a 344 (807)
T KOG0066|consen 266 KIENFDISAQGKLLFVNASLTIVYG-RRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDTVLKA 344 (807)
T ss_pred eeeeeeeecccceeeeccceEEEec-ceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHHHHHh
Confidence 34444443322 356889999999 9999999999999999999943211 000000 01111100000
Q ss_pred ----------------------------------------------HHHHHHHHcCCcc-ccccccccchHHHH-HHHHH
Q 004609 394 ----------------------------------------------WFDLILADIGDHQ-SLEQNLSTFSGHIS-RIVDI 425 (742)
Q Consensus 394 ----------------------------------------------~~d~il~~ig~~~-~~~~~lstfSgg~k-rl~~~ 425 (742)
-..+|++-+|.+. -.+++...||||.+ |++++
T Consensus 345 D~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~rPt~kFSGGWRMRvSLA 424 (807)
T KOG0066|consen 345 DKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQERPTTKFSGGWRMRVSLA 424 (807)
T ss_pred hHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcCCccccCCceeeehhHH
Confidence 0123555556543 34677889999999 99999
Q ss_pred HHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEEe
Q 004609 426 LELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 426 ~~l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~~ 494 (742)
+++...|.||+|||||+|||...... +-.||.....|.+|+|||.. +...|..++.+.+..+.|+
T Consensus 425 RALflEPTLLMLDEPTNHLDLNAVIW----LdNYLQgWkKTLLIVSHDQgFLD~VCtdIIHLD~qkLhyY 490 (807)
T KOG0066|consen 425 RALFLEPTLLMLDEPTNHLDLNAVIW----LDNYLQGWKKTLLIVSHDQGFLDSVCTDIIHLDNQKLHYY 490 (807)
T ss_pred HHHhcCceeeeecCCccccccceeee----hhhHHhhhhheeEEEecccchHHHHHHHHhhhhhhhhhhh
Confidence 99999999999999999999965444 44577767889999999977 6778998888877665543
|
|
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.4e-14 Score=160.76 Aligned_cols=158 Identities=20% Similarity=0.201 Sum_probs=118.5
Q ss_pred CcEEEeeeeeecCCce--e-cccccccCCceEEEEEeCCCCCcchHHhhHHhh-hh-------hhh-hceeecCCCCCCc
Q 004609 325 SEMTVGSLSKGISDFP--V-PIDIKVECETRVVVITGPNTGGKTASMKTLGLA-SL-------MSK-AGLYLPAKNHPRL 392 (742)
Q Consensus 325 ~~l~~~nl~~~y~~~~--v-~i~l~l~~g~~~~~ItGpNGsGKSTlLK~lGli-~~-------maq-~G~~vPa~~~~~i 392 (742)
..+.++|++..-++.. + +.+|.+++| +.+.|+||||||||||+|+|+-+ .+ -+. .-+|+|+.++...
T Consensus 391 ~~i~~~nl~l~~p~~~~ll~~l~~~v~~G-~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p~ 469 (604)
T COG4178 391 HGITLENLSLRTPDGQTLLSELNFEVRPG-ERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQ 469 (604)
T ss_pred ceeEEeeeeEECCCCCeeeccceeeeCCC-CEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCCC
Confidence 5678889888775533 3 999999999 99999999999999999999333 22 111 1357777663222
Q ss_pred h------------------HHHHHHHHcCCcccccc------ccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHH
Q 004609 393 P------------------WFDLILADIGDHQSLEQ------NLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPS 447 (742)
Q Consensus 393 ~------------------~~d~il~~ig~~~~~~~------~lstfSgg~k-rl~~~~~l~~~~~LlLLDEp~~glDp~ 447 (742)
+ -+.+++..+|+++.+++ =-..||+||+ |+++|+.+.++|++++|||-|+++|+.
T Consensus 470 GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~ 549 (604)
T COG4178 470 GTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEE 549 (604)
T ss_pred ccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChH
Confidence 1 13356667776654332 2357999998 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcccccc
Q 004609 448 EGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTR 485 (742)
Q Consensus 448 ~~~aL~~all~~l~~~~~~vlitTH~~~l~~~a~~~~~ 485 (742)
....+.+.+.+.+- ++|+|-++|-..+..+......
T Consensus 550 ~e~~l~q~l~~~lp--~~tvISV~Hr~tl~~~h~~~l~ 585 (604)
T COG4178 550 TEDRLYQLLKEELP--DATVISVGHRPTLWNFHSRQLE 585 (604)
T ss_pred HHHHHHHHHHhhCC--CCEEEEeccchhhHHHHhhhee
Confidence 99999886655432 6799999999887776655443
|
|
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.4e-13 Score=148.91 Aligned_cols=167 Identities=16% Similarity=0.177 Sum_probs=122.7
Q ss_pred CCcEEEeeeeeecCC-cee--cccccccCCceEEEEEeCCCCCcchHHhhH--------Hhhh------------hhhhh
Q 004609 324 NSEMTVGSLSKGISD-FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL--------GLAS------------LMSKA 380 (742)
Q Consensus 324 ~~~l~~~nl~~~y~~-~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l--------Gli~------------~maq~ 380 (742)
.|.+.+.|++|.|.. +++ +++|+++.| ..++|+||.|+||||+++.+ |-+. .+.++
T Consensus 260 ~g~v~F~~V~F~y~~~r~iL~~isf~i~~g-~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~a 338 (497)
T COG5265 260 LGAVAFINVSFAYDPRRPILNGISFTIPLG-KTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRA 338 (497)
T ss_pred cceEEEEEEEeeccccchhhcCccccccCc-cEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHH
Confidence 467899999999965 444 999999999 99999999999999999999 2221 13445
Q ss_pred ceeecCCCCCCch--HHHHH------------------------HHHc--CCccccccccccchHHHH-HHHHHHHhcCC
Q 004609 381 GLYLPAKNHPRLP--WFDLI------------------------LADI--GDHQSLEQNLSTFSGHIS-RIVDILELVSR 431 (742)
Q Consensus 381 G~~vPa~~~~~i~--~~d~i------------------------l~~i--g~~~~~~~~lstfSgg~k-rl~~~~~l~~~ 431 (742)
.+.||++. +-+. .+.++ +..+ |..--+-..--.+||||| |+++++.++.+
T Consensus 339 Ig~VPQDt-vLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~ 417 (497)
T COG5265 339 IGIVPQDT-VLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKN 417 (497)
T ss_pred hCcCcccc-eehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcC
Confidence 55777764 1111 00000 0000 001111122335899999 99999999999
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcccccceecceEEEe
Q 004609 432 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 432 ~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~l~~~a~~~~~i~~g~~~~~ 494 (742)
|++++|||.|+.||...-.+|..++- .+. .|.|.+++-|-+.-..-||.++.+++|.+.-.
T Consensus 418 p~il~~deatsaldt~te~~iq~~l~-~~~-~~rttlviahrlsti~~adeiivl~~g~i~er 478 (497)
T COG5265 418 PPILILDEATSALDTHTEQAIQAALR-EVS-AGRTTLVIAHRLSTIIDADEIIVLDNGRIVER 478 (497)
T ss_pred CCEEEEehhhhHhhhhHHHHHHHHHH-HHh-CCCeEEEEeehhhhccCCceEEEeeCCEEEec
Confidence 99999999999999999988887544 344 47899999999887777999999999988643
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.8e-13 Score=166.77 Aligned_cols=168 Identities=15% Similarity=0.216 Sum_probs=132.3
Q ss_pred CCcEEEeeeeeecCC---c-ee-cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh------hhhceeecCCCCC-
Q 004609 324 NSEMTVGSLSKGISD---F-PV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------SKAGLYLPAKNHP- 390 (742)
Q Consensus 324 ~~~l~~~nl~~~y~~---~-~v-~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m------aq~G~~vPa~~~~- 390 (742)
+..++++|.+++++. . .+ ++||++++| ..++|+||-|||||+||..| |-+..+ ...-.|+||.+-.
T Consensus 516 ~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G-~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gsiaYv~Q~pWI~ 594 (1381)
T KOG0054|consen 516 ENAIEIKNGSFSWDSESPEPTLKDINFEIKKG-QLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGSVAYVPQQPWIQ 594 (1381)
T ss_pred CceEEEeeeeEecCCCCCcccccceeEEecCC-CEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCeEEEeccccHhh
Confidence 346888999999864 2 23 999999999 99999999999999999998 544432 1122577876510
Q ss_pred --Cc------------hHHHHHHHHc-----------CCccccccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCC
Q 004609 391 --RL------------PWFDLILADI-----------GDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGT 444 (742)
Q Consensus 391 --~i------------~~~d~il~~i-----------g~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLDEp~~gl 444 (742)
.+ ..+++++..- ||.-.+-.+--+|||||| |+++||+.-.+.+++|||-|.+.+
T Consensus 595 ngTvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAV 674 (1381)
T KOG0054|consen 595 NGTVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAV 674 (1381)
T ss_pred CCcHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhh
Confidence 00 1134443322 444456677889999999 999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcccccceecceEEE
Q 004609 445 DPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEF 493 (742)
Q Consensus 445 Dp~~~~aL~~all~~l~~~~~~vlitTH~~~l~~~a~~~~~i~~g~~~~ 493 (742)
|.+.+..|.+..+..+.+ +.|+|++||..+....+|.++.++||++..
T Consensus 675 Dahvg~~if~~ci~~~L~-~KT~ILVTHql~~L~~ad~Iivl~~G~I~~ 722 (1381)
T KOG0054|consen 675 DAHVGKHIFEECIRGLLR-GKTVILVTHQLQFLPHADQIIVLKDGKIVE 722 (1381)
T ss_pred hHhhhHHHHHHHHHhhhc-CCEEEEEeCchhhhhhCCEEEEecCCeEec
Confidence 999999999988855444 689999999988888899999999999854
|
|
| >COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.5e-13 Score=146.27 Aligned_cols=144 Identities=20% Similarity=0.268 Sum_probs=108.3
Q ss_pred cccccccCCceEEEEEeCCCCCcchHHhhH-HhhhhhhhhceeecCCCCC-----------------Cc---hHHHHHHH
Q 004609 342 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMSKAGLYLPAKNHP-----------------RL---PWFDLILA 400 (742)
Q Consensus 342 ~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~maq~G~~vPa~~~~-----------------~i---~~~d~il~ 400 (742)
++||++.+| ++++|+|++|+||||+|+++ |....... -.|-|.+|.. .+ .+.+++..
T Consensus 401 ~vNL~ikpG-dvvaVvGqSGaGKttllRmi~G~~~~~~e-e~y~p~sg~v~vp~nt~~a~iPge~Ep~f~~~tilehl~s 478 (593)
T COG2401 401 NLNLEIKPG-DVVAVVGQSGAGKTTLLRMILGAQKGRGE-EKYRPDSGKVEVPKNTVSALIPGEYEPEFGEVTILEHLRS 478 (593)
T ss_pred ceeeEecCC-CeEEEEecCCCCcchHHHHHHHHhhcccc-cccCCCCCceeccccchhhccCcccccccCchhHHHHHhh
Confidence 999999999 99999999999999999999 33221111 1244444421 11 23444433
Q ss_pred -------------HcCCcc--ccccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCC
Q 004609 401 -------------DIGDHQ--SLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRV 464 (742)
Q Consensus 401 -------------~ig~~~--~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~ 464 (742)
+.|+.+ ..-..++.||.||+ |..+|..++..|++++.||+.++||+.....++..+-+..++.|
T Consensus 479 ~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~g 558 (593)
T COG2401 479 KTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAG 558 (593)
T ss_pred ccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhC
Confidence 334333 23467899999999 99999999999999999999999999999999998888777889
Q ss_pred cEEEEEecChhhh-hh-ccccccee
Q 004609 465 GLAVVTTHYADLS-CL-KDKDTRFE 487 (742)
Q Consensus 465 ~~vlitTH~~~l~-~~-a~~~~~i~ 487 (742)
.|++++||..++. ++ -|..+.+.
T Consensus 559 iTlivvThrpEv~~AL~PD~li~vg 583 (593)
T COG2401 559 ITLIVVTHRPEVGNALRPDTLILVG 583 (593)
T ss_pred CeEEEEecCHHHHhccCCceeEEee
Confidence 9999999999854 44 34444433
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.44 E-value=9.3e-14 Score=167.46 Aligned_cols=168 Identities=15% Similarity=0.176 Sum_probs=121.0
Q ss_pred CcEEEeeeeeec----CCcee--cccccccCCceEEEEEeCCCCCcchHHhhHHhhhh-------------------hhh
Q 004609 325 SEMTVGSLSKGI----SDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASL-------------------MSK 379 (742)
Q Consensus 325 ~~l~~~nl~~~y----~~~~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~lGli~~-------------------maq 379 (742)
++..-.|+++.- +.+.+ +|+=-+.+| -..+|.|++||||||||++|+-=.- .++
T Consensus 786 ~V~~w~dl~~~~~~qG~~~qLL~~V~G~~kPG-~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R 864 (1391)
T KOG0065|consen 786 DVFYWVDLPYEMPIQGGTRQLLNNVSGAFKPG-VLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFAR 864 (1391)
T ss_pred ceEEEEeCCccccccccceEhhhcCceEecCC-ceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhcc
Confidence 344455555443 22333 788888999 8999999999999999999921110 122
Q ss_pred hceeecCCC--C------------------------CCchHHHHHHHHcCCccccccccc----cchHHHH-HHHHHHHh
Q 004609 380 AGLYLPAKN--H------------------------PRLPWFDLILADIGDHQSLEQNLS----TFSGHIS-RIVDILEL 428 (742)
Q Consensus 380 ~G~~vPa~~--~------------------------~~i~~~d~il~~ig~~~~~~~~ls----tfSgg~k-rl~~~~~l 428 (742)
..+|+-+.. . .+..++++++.-+++.+..+.-+. -||.+|| |+.++..+
T Consensus 865 ~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVEL 944 (1391)
T KOG0065|consen 865 VSGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVEL 944 (1391)
T ss_pred ccceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEE
Confidence 222333222 0 011347788888888766555444 4999999 89999999
Q ss_pred cCCC-cEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh--hhhhcccccceec-ceEEEe
Q 004609 429 VSRE-SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD--LSCLKDKDTRFEN-AATEFS 494 (742)
Q Consensus 429 ~~~~-~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~--l~~~a~~~~~i~~-g~~~~~ 494 (742)
+.+| +||+|||||+|||.+....+++ +++.+.+.|.+||+|-|... +-+.-|+...+.. |.++|.
T Consensus 945 vA~P~~ilFLDEPTSGLDsqaA~~i~~-~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~ 1013 (1391)
T KOG0065|consen 945 VANPSSILFLDEPTSGLDSQAAAIVMR-FLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYF 1013 (1391)
T ss_pred ecCCceeEEecCCCCCccHHHHHHHHH-HHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEe
Confidence 9999 8999999999999999999998 78889999999999999976 4455566666654 456554
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.1e-12 Score=147.58 Aligned_cols=152 Identities=17% Similarity=0.208 Sum_probs=116.6
Q ss_pred eecccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhh--------------------hhhhceeecCCCC-----CCch
Q 004609 340 PVPIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL--------------------MSKAGLYLPAKNH-----PRLP 393 (742)
Q Consensus 340 ~v~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~--------------------maq~G~~vPa~~~-----~~i~ 393 (742)
+-++||++.+| ++++|.|-=|+|+|-++++| |.-.. +.+-..|+|.+.. ..++
T Consensus 275 ~~dvSf~vr~G-EIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~s 353 (500)
T COG1129 275 VRDVSFTVRAG-EILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMS 353 (500)
T ss_pred eeCceeEEeCC-cEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCc
Confidence 34899999999 99999999999999999999 43221 1111235554431 1112
Q ss_pred HHHHH--------------------------HHHcCC-ccccccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCC
Q 004609 394 WFDLI--------------------------LADIGD-HQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTD 445 (742)
Q Consensus 394 ~~d~i--------------------------l~~ig~-~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLDEp~~glD 445 (742)
+.+++ ...++. ..+.++.+++||||-+ ++.+++-++.+|++|||||||+|.|
T Consensus 354 I~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGID 433 (500)
T COG1129 354 IAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGID 433 (500)
T ss_pred HHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCcc
Confidence 22221 222222 2456789999999966 8999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEecCh-hhhhhcccccceecceEEE
Q 004609 446 PSEGVALATSILQYLRDRVGLAVVTTHYA-DLSCLKDKDTRFENAATEF 493 (742)
Q Consensus 446 p~~~~aL~~all~~l~~~~~~vlitTH~~-~l~~~a~~~~~i~~g~~~~ 493 (742)
.-....|.. ++..+.+.|..||++|-++ |+..+||++..|.+|.+.-
T Consensus 434 VGAK~eIy~-li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~ 481 (500)
T COG1129 434 VGAKAEIYR-LIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVG 481 (500)
T ss_pred cchHHHHHH-HHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEE
Confidence 999999998 7788888899988888885 5888999999999998853
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.4e-12 Score=160.69 Aligned_cols=169 Identities=17% Similarity=0.190 Sum_probs=129.4
Q ss_pred CCCcEEEeeeeeecCCc--ee--cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhh-------------------hh
Q 004609 323 ENSEMTVGSLSKGISDF--PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MS 378 (742)
Q Consensus 323 ~~~~l~~~nl~~~y~~~--~v--~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~-------------------ma 378 (742)
.+|.++++|++..|... .| ++||++.+| +.+||+|.-|||||||+.++ .++-+ +.
T Consensus 1135 ~~G~I~f~~~~~RYrp~lp~VLk~is~~I~p~-eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLR 1213 (1381)
T KOG0054|consen 1135 SKGEIEFEDLSLRYRPNLPLVLKGISFTIKPG-EKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLR 1213 (1381)
T ss_pred CCCeEEEEEeEEEeCCCCcchhcCceEEEcCC-ceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHH
Confidence 35899999999999643 44 999999999 99999999999999999988 33321 22
Q ss_pred hhceeecCCCC-------CCchHHHH--------HHHHc-----------CCccccccccccchHHHH-HHHHHHHhcCC
Q 004609 379 KAGLYLPAKNH-------PRLPWFDL--------ILADI-----------GDHQSLEQNLSTFSGHIS-RIVDILELVSR 431 (742)
Q Consensus 379 q~G~~vPa~~~-------~~i~~~d~--------il~~i-----------g~~~~~~~~lstfSgg~k-rl~~~~~l~~~ 431 (742)
..-..+||++- ..+..|++ .++.. |++..+..+-+.||.||| -++++|+++.+
T Consensus 1214 srlsIIPQdPvLFsGTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~ 1293 (1381)
T KOG0054|consen 1214 SRLSIIPQDPVLFSGTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRK 1293 (1381)
T ss_pred hcCeeeCCCCceecCccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhcc
Confidence 23347788761 11222221 12221 345566677789999999 58899999999
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcccccceecceEE-Ee
Q 004609 432 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATE-FS 494 (742)
Q Consensus 432 ~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~l~~~a~~~~~i~~g~~~-~~ 494 (742)
+++|+|||.|++.|+..-.-|-..|.+.++ ++|||.+-|...-..-+|++.++++|.+. ||
T Consensus 1294 skILvLDEATAsVD~~TD~lIQ~tIR~~F~--dcTVltIAHRl~TVmd~DrVlVld~G~v~Efd 1355 (1381)
T KOG0054|consen 1294 SKILVLDEATASVDPETDALIQKTIREEFK--DCTVLTIAHRLNTVMDSDRVLVLDAGRVVEFD 1355 (1381)
T ss_pred CCEEEEecccccCChHHHHHHHHHHHHHhc--CCeEEEEeeccchhhhcCeEEEeeCCeEeecC
Confidence 999999999999999887777766666554 58999999998877779999999999874 54
|
|
| >cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.39 E-value=7.6e-13 Score=140.98 Aligned_cols=75 Identities=19% Similarity=0.244 Sum_probs=62.0
Q ss_pred ccchHHHH-HHHHHHHhc--C--CCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhccccccee
Q 004609 413 STFSGHIS-RIVDILELV--S--RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFE 487 (742)
Q Consensus 413 stfSgg~k-rl~~~~~l~--~--~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~l~~~a~~~~~i~ 487 (742)
.+||+||+ |+.++++.+ . +|+++|||||++|+|+.....+...+. .+.+ +.++|++||+..+..++++.+.+.
T Consensus 169 ~~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~-~~~~-~~tii~isH~~~~~~~~d~~~~l~ 246 (276)
T cd03241 169 KIASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLK-ELSR-SHQVLCITHLPQVAAMADNHFLVE 246 (276)
T ss_pred hhcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHH-HHhC-CCEEEEEechHHHHHhcCcEEEEE
Confidence 35899999 788886543 3 999999999999999999999998554 4444 689999999998888899888777
Q ss_pred cc
Q 004609 488 NA 489 (742)
Q Consensus 488 ~g 489 (742)
++
T Consensus 247 ~~ 248 (276)
T cd03241 247 KE 248 (276)
T ss_pred Ee
Confidence 65
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.5e-12 Score=145.54 Aligned_cols=157 Identities=19% Similarity=0.156 Sum_probs=114.8
Q ss_pred cEEEeeeeeecCC-cee---cccccccCCceEEEEEeCCCCCcchHHhhHHhhhhh--------h----hhceeecCCCC
Q 004609 326 EMTVGSLSKGISD-FPV---PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLM--------S----KAGLYLPAKNH 389 (742)
Q Consensus 326 ~l~~~nl~~~y~~-~~v---~i~l~l~~g~~~~~ItGpNGsGKSTlLK~lGli~~m--------a----q~G~~vPa~~~ 389 (742)
.+++++|+.+-.+ ..+ +++++++.| .-+.||||||||||.|||.+|-+-.. . +--+|+|+.++
T Consensus 433 ~i~~e~v~l~tPt~g~~lie~Ls~~V~~g-~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~~~lfflPQrPY 511 (659)
T KOG0060|consen 433 AIEFEEVSLSTPTNGDLLIENLSLEVPSG-QNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLFFLPQRPY 511 (659)
T ss_pred eEEeeeeeecCCCCCceeeeeeeeEecCC-CeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCCCceEEecCCCC
Confidence 5677777776643 333 799999999 89999999999999999999655431 1 22368888874
Q ss_pred CCchH-----------------------HH---------HHHHHcC-Ccc-ccccccccchHHHH-HHHHHHHhcCCCcE
Q 004609 390 PRLPW-----------------------FD---------LILADIG-DHQ-SLEQNLSTFSGHIS-RIVDILELVSRESL 434 (742)
Q Consensus 390 ~~i~~-----------------------~d---------~il~~ig-~~~-~~~~~lstfSgg~k-rl~~~~~l~~~~~L 434 (742)
..++- +. +++.+.| .++ ....=..+||+||+ |+++|+.+.++|.+
T Consensus 512 mt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~ 591 (659)
T KOG0060|consen 512 MTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKF 591 (659)
T ss_pred ccccchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCce
Confidence 33321 11 2333443 222 33344679999988 99999999999999
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhccccccee
Q 004609 435 VLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFE 487 (742)
Q Consensus 435 lLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~l~~~a~~~~~i~ 487 (742)
.+|||-|+.+|..--.++.. .+++.|.|.|-++|-..+..+=+....+.
T Consensus 592 AiLDE~TSAv~~dvE~~~Yr----~~r~~giT~iSVgHRkSL~kfHd~~L~~~ 640 (659)
T KOG0060|consen 592 AILDECTSAVTEDVEGALYR----KCREMGITFISVGHRKSLWKFHDYVLRMD 640 (659)
T ss_pred EEeechhhhccHHHHHHHHH----HHHHcCCeEEEeccHHHHHhhhhEEEEec
Confidence 99999999999987777665 44555999999999988887655554444
|
|
| >KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.35 E-value=7.5e-12 Score=138.29 Aligned_cols=154 Identities=18% Similarity=0.131 Sum_probs=109.2
Q ss_pred cEEEeeeeeecC--Ccee-cccccccCCceEEEEEeCCCCCcchHHhhHHhhhhh---------hhhceeecCCCCCCch
Q 004609 326 EMTVGSLSKGIS--DFPV-PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLM---------SKAGLYLPAKNHPRLP 393 (742)
Q Consensus 326 ~l~~~nl~~~y~--~~~v-~i~l~l~~g~~~~~ItGpNGsGKSTlLK~lGli~~m---------aq~G~~vPa~~~~~i~ 393 (742)
.+.++|+..--. +..| .++|.+++| --+.||||||||||.|+|++|-+.+. .+..+|+|+.++...+
T Consensus 481 gI~lenIpvItP~~~vvv~~Ltf~i~~G-~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~~~~mFYIPQRPYms~g 559 (728)
T KOG0064|consen 481 GIILENIPVITPAGDVLVPKLTFQIEPG-MHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPRPNNIFYIPQRPYMSGG 559 (728)
T ss_pred ceEEecCceeccCcceeecceeEEecCC-ceEEEECCCCccHHHHHHHHhccCcccCCeeecCCCcceEeccCCCccCcC
Confidence 456667666543 2233 899999999 88999999999999999999554332 2335678887643332
Q ss_pred H-----------------------HHHHHHHcCCccc---------cccccccchHHHH-HHHHHHHhcCCCcEEEEcCC
Q 004609 394 W-----------------------FDLILADIGDHQS---------LEQNLSTFSGHIS-RIVDILELVSRESLVLIDEI 440 (742)
Q Consensus 394 ~-----------------------~d~il~~ig~~~~---------~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLDEp 440 (742)
- ...|+..+.++.- +..=-..||||++ |+..|+.+-++|...+|||-
T Consensus 560 tlRDQIIYPdS~e~~~~kg~~d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkyalLDEc 639 (728)
T KOG0064|consen 560 TLRDQIIYPDSSEQMKRKGYTDQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDEC 639 (728)
T ss_pred cccceeecCCcHHHHHhcCCCHHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchhhhhhh
Confidence 1 1122322222211 1122346899999 99999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhccccc
Q 004609 441 GSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDT 484 (742)
Q Consensus 441 ~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~l~~~a~~~~ 484 (742)
|+...+.--..+.++...+ |.+.|-+||-..+..+-....
T Consensus 640 TsAvsidvE~~i~~~ak~~----gi~llsithrpslwk~h~~ll 679 (728)
T KOG0064|consen 640 TSAVSIDVEGKIFQAAKDA----GISLLSITHRPSLWKYHTHLL 679 (728)
T ss_pred hcccccchHHHHHHHHHhc----CceEEEeecCccHHHHHHHHH
Confidence 9999998888877755544 889999999988776544433
|
|
| >PF05192 MutS_III: MutS domain III C-terminus | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.9e-12 Score=127.53 Aligned_cols=169 Identities=28% Similarity=0.302 Sum_probs=130.8
Q ss_pred CchHHHhccCCCCCCCHHHHHHHHHHHHHHHH--H-HHcCCCCCCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q 004609 1 MGHAVVQKAQIPFGKSLEESQKLLNQTSAALA--M-MQSQPLDLSTIEDIAGILNSAVSGQLLSPSEICAVRRTLRAVNN 77 (742)
Q Consensus 1 mG~~~~~~~~l~~~~~~~~~~~~l~~~~e~~~--~-~~~~~~~l~~~~di~~~l~r~~~g~~l~~~el~~i~~~l~~~~~ 77 (742)
||++++++|.+.|..|.++|+.+++.++++.. . ......+|++++|+.+++.++..|.. ++.++..+..++..+.+
T Consensus 33 ~Gkr~L~~~l~~P~~d~~~I~~R~~~v~~~~~n~~~~~~~~~~l~~~~di~~~l~~l~~~~~-~~~~~~~l~~~l~~~~~ 111 (204)
T PF05192_consen 33 MGKRLLRSWLLQPLTDIEEIEKRQDAVEEFLQNEELREELRSILKKIPDIERILKRLRSGRA-SPQDLLKLYKTLRSIIE 111 (204)
T ss_dssp HHHHHHHHHHHS-BS-HHHHHHHHHHHHHHHHTHHHHHHHHHHHTTC-SHHHHHHHHHTTHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhhhHhhhhhhhhhccchHHHHHHHHHHhhc-ChHHHHHHHHHHHHHHH
Confidence 69999999999999999999999999999986 2 22345578899999999999988775 89999999999999999
Q ss_pred HHHHHHHhhhccCCccccchhHHHHHhcCCChhHHHHHHhhhhccCCCcccCCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004609 78 VWKKLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEKIGFCIDCKLLIILDRASEDLELIRAERKRNMENLDSLLKKVA 157 (742)
Q Consensus 78 l~~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~l~~~I~~~id~~~~~i~d~aS~~L~~iR~~~~~~~~~l~~~l~~~~ 157 (742)
+++++.... ...|.|..+...+++++.+.+.|.++||++.. ..+..+
T Consensus 112 i~~~~~~~~-------~~~~~L~~l~~~l~~~~~l~~~i~~~id~~~~-~~~~~~------------------------- 158 (204)
T PF05192_consen 112 IKKLLSERL-------ESSPLLRKLLSSLPDFSELLDEIESTIDEDKS-LAIREQ------------------------- 158 (204)
T ss_dssp HHHHHHCTS-------SSTHHHHHHHHHHCSHHHHHHHHHHHBHTS-C-CHCTTS-------------------------
T ss_pred HHHHHHhhc-------ccHHHHHHHHHhcccHHHHHHHHHHHHhcCcH-HHHhcc-------------------------
Confidence 999865321 11256777777777777888888888876411 000000
Q ss_pred HHHHHhcCCCCcccccccCcEEEEEccccccCCCCcEEEEEccCCcEEEeccchhhhhhhHHHHHhHHHHHHHHHHHHHH
Q 004609 158 AQIFQAGGIDKPLITKRRSRMCVGIKASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEETAILSLL 237 (742)
Q Consensus 158 ~~~~~~~~~~~~~it~r~~r~vi~v~~~~~~~~~~g~v~~~s~sg~t~~~ep~~~v~lnn~~~~l~~~e~~ee~~Il~~L 237 (742)
+ +| +. +..++.+|+.+|
T Consensus 159 ----------~-~I--~~--------------------------------------------------~~~~~~~i~~~L 175 (204)
T PF05192_consen 159 ----------D-II--RD--------------------------------------------------INDEEQRILREL 175 (204)
T ss_dssp ----------S-SB--ST--------------------------------------------------HHHHHHHHHHHH
T ss_pred ----------c-HH--HH--------------------------------------------------HHHHHHHHHHHH
Confidence 0 00 00 567788999999
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 004609 238 TAEIAKSEREIKYLMDRVLEIDLAFARAG 266 (742)
Q Consensus 238 ~~~i~~~~~~l~~~~~~l~~lD~~~A~a~ 266 (742)
+..|.++.+.|..+++++++||+++|+|+
T Consensus 176 ~~~i~~~~~~l~~~~~~i~eLD~l~s~A~ 204 (204)
T PF05192_consen 176 TNEIRKYSPELRELSEAIAELDVLISFAK 204 (204)
T ss_dssp HHHHGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999985
|
; InterPro: IPR007696 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the core domain (domain 3) found in proteins of the MutS family. The core domain of MutS adopts a multi-helical structure comprised of two subdomains, which are interrupted by the clamp domain. Two of the helices in the core domain comprise the levers that extend towards the DNA. This domain is found associated with Pfam:PF00488, Pfam:PF05188, Pfam:PF01624 and Pfam:PF05190. The aligned region corresponds with domain III, which is central to the structure of Thermus aquaticus MutS as characterised in [].; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 2O8F_A 3THW_A 3THX_A 2O8C_A 3THY_A 2O8E_A 2O8B_A 3THZ_A 2O8D_A 1FW6_A .... |
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=7e-12 Score=158.37 Aligned_cols=89 Identities=27% Similarity=0.151 Sum_probs=76.3
Q ss_pred HHHcCCcc-ccccccccchHHHH-HHHHHHHhcCC---CcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecC
Q 004609 399 LADIGDHQ-SLEQNLSTFSGHIS-RIVDILELVSR---ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHY 473 (742)
Q Consensus 399 l~~ig~~~-~~~~~lstfSgg~k-rl~~~~~l~~~---~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~ 473 (742)
+.++|+.- .+.++..||||||. |+.++..+..+ +.|++|||||+||+|.+...|.. +++.|.+.|.|||++.||
T Consensus 1683 L~~vGLgYl~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~-~l~~L~~~g~tvivieH~ 1761 (1809)
T PRK00635 1683 LIDNGLGYLPLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLV-QLRTLVSLGHSVIYIDHD 1761 (1809)
T ss_pred HHHcCCCeeeCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHH-HHHHHHhcCCeEEEEeCC
Confidence 45556543 46789999999998 99999888654 78999999999999999999998 778899999999999999
Q ss_pred hhhhhhcccccceec
Q 004609 474 ADLSCLKDKDTRFEN 488 (742)
Q Consensus 474 ~~l~~~a~~~~~i~~ 488 (742)
+++...||.++.+..
T Consensus 1762 ~~~i~~aD~iidlgp 1776 (1809)
T PRK00635 1762 PALLKQADYLIEMGP 1776 (1809)
T ss_pred HHHHHhCCEEEEcCC
Confidence 998888998877654
|
|
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.1e-11 Score=143.28 Aligned_cols=88 Identities=26% Similarity=0.270 Sum_probs=73.9
Q ss_pred HHHcCCcc-ccccccccchHHHH-HHHHHHHhc---CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecC
Q 004609 399 LADIGDHQ-SLEQNLSTFSGHIS-RIVDILELV---SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHY 473 (742)
Q Consensus 399 l~~ig~~~-~~~~~lstfSgg~k-rl~~~~~l~---~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~ 473 (742)
+.++|++- .+-++..|||||+. |+.+|..+. +...|.||||||+||-+.+-..|.. ++..|.+.|.|||++.|+
T Consensus 806 L~dVGLgYi~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~-VL~rLvd~GnTViVIEHN 884 (935)
T COG0178 806 LVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLE-VLHRLVDKGNTVIVIEHN 884 (935)
T ss_pred HHHcCcceEecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEecc
Confidence 44555542 45688999999998 999997764 5569999999999999999999998 888899999999999999
Q ss_pred hhhhhhccccccee
Q 004609 474 ADLSCLKDKDTRFE 487 (742)
Q Consensus 474 ~~l~~~a~~~~~i~ 487 (742)
+++..-||.++.+.
T Consensus 885 LdVIk~AD~IIDLG 898 (935)
T COG0178 885 LDVIKTADWIIDLG 898 (935)
T ss_pred cceEeecCEEEEcC
Confidence 99888888776543
|
|
| >COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.5e-11 Score=120.74 Aligned_cols=146 Identities=15% Similarity=0.233 Sum_probs=106.9
Q ss_pred cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhh---------------------------hhhhhceeecCCCCCCc-
Q 004609 342 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLAS---------------------------LMSKAGLYLPAKNHPRL- 392 (742)
Q Consensus 342 ~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~---------------------------~maq~G~~vPa~~~~~i- 392 (742)
.++++++.| ++-+++|.+|||||-.-|.| |... +.++-...+++++.+-+
T Consensus 25 ~v~ltlnEG-Ei~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RRk~ig~~isMIFQeP~sCLD 103 (330)
T COG4170 25 RVSMTLNEG-EIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLD 103 (330)
T ss_pred eeeeeeccc-eeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhhhhhccchhhhhcCchhhcC
Confidence 899999999 99999999999999999999 4331 01222222222221100
Q ss_pred -------------h----------HH-------HHHHHHcCCcc---ccccccccchHHHH-HHHHHHHhcCCCcEEEEc
Q 004609 393 -------------P----------WF-------DLILADIGDHQ---SLEQNLSTFSGHIS-RIVDILELVSRESLVLID 438 (742)
Q Consensus 393 -------------~----------~~-------d~il~~ig~~~---~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLD 438 (742)
| .| -.++.++|..+ -...++-.+.-|+- ++.++.+++++|.|||.|
T Consensus 104 PS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElTeGE~QKVMIA~A~AnqPrLLIAD 183 (330)
T COG4170 104 PSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELTEGECQKVMIAIALANQPRLLIAD 183 (330)
T ss_pred hHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhccCcceeeeeehhhccCCceEecc
Confidence 0 01 02466677543 34566778887776 788889999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcC-CcEEEEEecChh-hhhhcccccceecc
Q 004609 439 EIGSGTDPSEGVALATSILQYLRDR-VGLAVVTTHYAD-LSCLKDKDTRFENA 489 (742)
Q Consensus 439 Ep~~glDp~~~~aL~~all~~l~~~-~~~vlitTH~~~-l~~~a~~~~~i~~g 489 (742)
|||+.++|.....+.. ++..+.+. +.++++++||.. +.+.||++.++.-|
T Consensus 184 EPTN~~e~~Tq~QifR-LLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlYCG 235 (330)
T COG4170 184 EPTNSMEPTTQAQIFR-LLSRLNQNSNTTILLISHDLQMISQWADKINVLYCG 235 (330)
T ss_pred CCCcccCccHHHHHHH-HHHHhhccCCceEEEEcccHHHHHHHhhheEEEEec
Confidence 9999999999999998 66666654 668899999976 77899988776655
|
|
| >cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage | Back alignment and domain information |
|---|
Probab=99.16 E-value=5.3e-11 Score=126.50 Aligned_cols=75 Identities=24% Similarity=0.203 Sum_probs=53.7
Q ss_pred cccchHHHH-HHHHHHHhc---------CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecC-hhhhhhc
Q 004609 412 LSTFSGHIS-RIVDILELV---------SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHY-ADLSCLK 480 (742)
Q Consensus 412 lstfSgg~k-rl~~~~~l~---------~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~-~~l~~~a 480 (742)
.+.+|+||+ ++.++++++ .+|+++|||||+++|||.....+...+.+ .+ .++++||+ ..+..++
T Consensus 181 ~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~----~~-q~ii~~~~~~~~~~~~ 255 (270)
T cd03242 181 ADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEG----RV-QTFVTTTDLADFDALW 255 (270)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhc----CC-CEEEEeCCchhccchh
Confidence 556899999 677777654 79999999999999999999988774433 23 35555555 4466665
Q ss_pred ---ccccceecceE
Q 004609 481 ---DKDTRFENAAT 491 (742)
Q Consensus 481 ---~~~~~i~~g~~ 491 (742)
.+++.+.+|.+
T Consensus 256 ~~~~~i~~l~~g~i 269 (270)
T cd03242 256 LRRAQIFRVDAGTL 269 (270)
T ss_pred ccCccEEEEeCcEE
Confidence 44556666654
|
When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression [] | Back alignment and domain information |
|---|
Probab=99.15 E-value=3e-10 Score=116.55 Aligned_cols=71 Identities=21% Similarity=0.222 Sum_probs=50.2
Q ss_pred cchHHHH-HHHHHHH----hcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcccccce
Q 004609 414 TFSGHIS-RIVDILE----LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRF 486 (742)
Q Consensus 414 tfSgg~k-rl~~~~~----l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~l~~~a~~~~~i 486 (742)
.|||||+ .+++++. ...+.+++|||||.++||+.....++. ++..+.+ ..-+|++||...+...++..+.+
T Consensus 136 ~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~-~l~~~~~-~~Q~ii~Th~~~~~~~a~~~~~v 211 (220)
T PF02463_consen 136 FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLAD-LLKELSK-QSQFIITTHNPEMFEDADKLIGV 211 (220)
T ss_dssp GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHH-HHHHHTT-TSEEEEE-S-HHHHTT-SEEEEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccc-ccccccc-ccccccccccccccccccccccc
Confidence 9999999 5555533 346778999999999999999999998 4445544 36799999999988888776654
|
The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A .... |
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.3e-10 Score=138.87 Aligned_cols=95 Identities=24% Similarity=0.214 Sum_probs=82.1
Q ss_pred HHHcCCccc-cccccccchHHHH-HHHHHHHhcCCC--cEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCh
Q 004609 399 LADIGDHQS-LEQNLSTFSGHIS-RIVDILELVSRE--SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYA 474 (742)
Q Consensus 399 l~~ig~~~~-~~~~lstfSgg~k-rl~~~~~l~~~~--~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~ 474 (742)
+.++|+... +++.+++|||||+ |+.++++++.+| .++||||||+||||.+...|.. ++..+.+.|.|||++||+.
T Consensus 471 L~~vgL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~-~L~~L~~~G~TVIvVeHd~ 549 (924)
T TIGR00630 471 LIDVGLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIN-TLKRLRDLGNTVIVVEHDE 549 (924)
T ss_pred HhhccccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHH-HHHHHHhCCCEEEEEECCH
Confidence 456677654 7899999999999 899999998876 8999999999999999999998 6666777899999999999
Q ss_pred hhhhhcccccce------ecceEEEe
Q 004609 475 DLSCLKDKDTRF------ENAATEFS 494 (742)
Q Consensus 475 ~l~~~a~~~~~i------~~g~~~~~ 494 (742)
+...+||+++.+ .+|.+.+.
T Consensus 550 ~~i~~aD~vi~LgpgaG~~~G~Iv~~ 575 (924)
T TIGR00630 550 ETIRAADYVIDIGPGAGIHGGEVVAS 575 (924)
T ss_pred HHHhhCCEEEEecccccCCCCEEeec
Confidence 866799999999 77877653
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.5e-10 Score=137.50 Aligned_cols=95 Identities=25% Similarity=0.216 Sum_probs=82.6
Q ss_pred HHHcCCccc-cccccccchHHHH-HHHHHHHhcCCC--cEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCh
Q 004609 399 LADIGDHQS-LEQNLSTFSGHIS-RIVDILELVSRE--SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYA 474 (742)
Q Consensus 399 l~~ig~~~~-~~~~lstfSgg~k-rl~~~~~l~~~~--~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~ 474 (742)
+..+|+... +++++.+|||||+ |+.++++++.+| .++||||||+||||.+...|.. ++..+++.|.|||++||+.
T Consensus 473 L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~-~L~~L~~~G~TVIvVeH~~ 551 (943)
T PRK00349 473 LVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIE-TLKHLRDLGNTLIVVEHDE 551 (943)
T ss_pred hhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHH-HHHHHHhCCCEEEEEeCCH
Confidence 556777654 7999999999999 899999998886 8999999999999999999998 6666788899999999998
Q ss_pred hhhhhcccccce------ecceEEEe
Q 004609 475 DLSCLKDKDTRF------ENAATEFS 494 (742)
Q Consensus 475 ~l~~~a~~~~~i------~~g~~~~~ 494 (742)
+....||++..+ .+|.+.+.
T Consensus 552 ~~i~~aD~vi~LgpgaG~~~G~iv~~ 577 (943)
T PRK00349 552 DTIRAADYIVDIGPGAGVHGGEVVAS 577 (943)
T ss_pred HHHHhCCEEEEeccccCCCCCEEeec
Confidence 866679999999 77787654
|
|
| >KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.02 E-value=4.7e-10 Score=121.73 Aligned_cols=137 Identities=22% Similarity=0.319 Sum_probs=104.7
Q ss_pred cccccccCC----ceEEEEEeCCCCCcchHHhhHHhhhhhhhhceeecCCCCCCch------------------------
Q 004609 342 PIDIKVECE----TRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLP------------------------ 393 (742)
Q Consensus 342 ~i~l~l~~g----~~~~~ItGpNGsGKSTlLK~lGli~~maq~G~~vPa~~~~~i~------------------------ 393 (742)
++.+.+..| .++++.+|.||.|||||++++ +|...|..+ ..+|
T Consensus 354 ~F~L~i~~GefsdSeiivmlgEngtgkTTfi~ml--------ag~~~pd~~-~e~p~lnVSykpqkispK~~~tvR~ll~ 424 (592)
T KOG0063|consen 354 DFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRML--------AGRLKPDEG-GEIPVLNVSYKPQKISPKREGTVRQLLH 424 (592)
T ss_pred eEEEEEeecccCCceeEEEEccCCcchhHHHHHH--------hcCCCCCcc-CcccccceeccccccCccccchHHHHHH
Confidence 455555433 379999999999999999999 554444433 1111
Q ss_pred -----------HHHHHHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHh
Q 004609 394 -----------WFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLR 461 (742)
Q Consensus 394 -----------~~d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~ 461 (742)
+..+++.-+..++.+++.+.+||||+. |+++++.+-.+.++.|+|||.+-||.+.+..-+.-+.+++.
T Consensus 425 ~kIr~ay~~pqF~~dvmkpL~ie~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~AskvikRfil 504 (592)
T KOG0063|consen 425 TKIRDAYMHPQFVNDVMKPLQIENIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIASKVIKRFIL 504 (592)
T ss_pred HHhHhhhcCHHHHHhhhhhhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHHHHHHHHHHHH
Confidence 122233344556788899999999988 89999999999999999999999999999888887777777
Q ss_pred cCCcEEEEEecChhhhh-hccccccee
Q 004609 462 DRVGLAVVTTHYADLSC-LKDKDTRFE 487 (742)
Q Consensus 462 ~~~~~vlitTH~~~l~~-~a~~~~~i~ 487 (742)
..+.|.+++.||.-.+. ++|+.+.+.
T Consensus 505 hakktafvVEhdfImaTYladrvivf~ 531 (592)
T KOG0063|consen 505 HAKKTAFVVEHDFIMATYLADRVIVFE 531 (592)
T ss_pred hccchhhhhhhHHHHHHhhcceeEEEe
Confidence 77889999999987664 577766544
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.7e-09 Score=120.09 Aligned_cols=169 Identities=19% Similarity=0.252 Sum_probs=127.1
Q ss_pred CCCcEEEeeeeeecCC--cee-cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhh--------------------h
Q 004609 323 ENSEMTVGSLSKGISD--FPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------S 378 (742)
Q Consensus 323 ~~~~l~~~nl~~~y~~--~~v-~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~m--------------------a 378 (742)
|..+++++||+..-.. ..+ ++||++..| ++++|.|-.|-|-+.|+..| |+-..- .
T Consensus 254 g~~vL~V~~L~v~~~~~~~~v~~vs~~Vr~G-EIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r 332 (501)
T COG3845 254 GEVVLEVEDLSVKDRRGVTAVKDVSFEVRAG-EIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERR 332 (501)
T ss_pred CCeEEEEeeeEeecCCCCceeeeeeeEEecC-cEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHH
Confidence 3457888888876643 234 999999999 99999999999999999999 443110 0
Q ss_pred hhc-eeecCCCC-----CCchHHHH----------------------------HHHHcCCc-cccccccccchHHHH-HH
Q 004609 379 KAG-LYLPAKNH-----PRLPWFDL----------------------------ILADIGDH-QSLEQNLSTFSGHIS-RI 422 (742)
Q Consensus 379 q~G-~~vPa~~~-----~~i~~~d~----------------------------il~~ig~~-~~~~~~lstfSgg~k-rl 422 (742)
..| .|+|.+.. ..++.+++ ++..++.. .+...+..+||||.+ ++
T Consensus 333 ~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQK~ 412 (501)
T COG3845 333 RLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKL 412 (501)
T ss_pred hcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcceehh
Confidence 111 24554320 11222222 23334332 455667899999977 89
Q ss_pred HHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hhhhcccccceecceEEE
Q 004609 423 VDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF 493 (742)
Q Consensus 423 ~~~~~l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~~~a~~~~~i~~g~~~~ 493 (742)
.+++.+..+|+|||+..||.|+|....+.+...+++ .++.|+.|+++|-+++ +..+||++..+.+|.+..
T Consensus 413 IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e-~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~ 483 (501)
T COG3845 413 ILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLE-LRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVG 483 (501)
T ss_pred hhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHH-HHhcCCEEEEEehhHHHHHHhhheeeeeeCCceec
Confidence 999999999999999999999999999999987766 5777899999999976 889999999999998753
|
|
| >COG3910 Predicted ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.7e-09 Score=105.02 Aligned_cols=69 Identities=22% Similarity=0.263 Sum_probs=59.8
Q ss_pred cccccchHHHHHHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh
Q 004609 410 QNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCL 479 (742)
Q Consensus 410 ~~lstfSgg~krl~~~~~l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~l~~~ 479 (742)
..+...|-|+-=+.++..-.++.-+.|||||-++|.|.-+.+|.. ++..+.+.|.-+||+||..-+..+
T Consensus 125 ~sLh~~SHGEsf~~i~~~rf~~~GiYiLDEPEa~LSp~RQlella-~l~~la~sGaQ~IiATHSPiLlAi 193 (233)
T COG3910 125 RSLHHMSHGESFLAIFHNRFNGQGIYILDEPEAALSPSRQLELLA-ILRDLADSGAQIIIATHSPILLAI 193 (233)
T ss_pred cchhhhccchHHHHHHHHHhccCceEEecCccccCCHHHHHHHHH-HHHHHHhcCCeEEEEecChhheeC
Confidence 446777888887888877889999999999999999999999986 889999999999999999765544
|
|
| >PRK13695 putative NTPase; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=9.8e-10 Score=108.92 Aligned_cols=131 Identities=19% Similarity=0.236 Sum_probs=80.8
Q ss_pred EEEEEeCCCCCcchHHhhH-Hhhhhhhhhce----eecCCC---CCCch-----HH---HHHHHHcC--Ccccccccccc
Q 004609 353 VVVITGPNTGGKTASMKTL-GLASLMSKAGL----YLPAKN---HPRLP-----WF---DLILADIG--DHQSLEQNLST 414 (742)
Q Consensus 353 ~~~ItGpNGsGKSTlLK~l-Gli~~maq~G~----~vPa~~---~~~i~-----~~---d~il~~ig--~~~~~~~~lst 414 (742)
.++|+|+||+|||||++.+ +.+. ..|. ++.... ....+ +. ...+...+ ....+.+....
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~---~~G~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 78 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLK---EEGYKVGGFYTEEVREGGKRIGFKIIDLDTGEEGILARVGFPSRPRVGKYVVN 78 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEEcHHHHhcCCccceEEEEcCCCCeEEccccCCCCCCceeeEEEe
Confidence 4789999999999999987 2211 1121 211100 00000 00 01122222 12234455677
Q ss_pred chHHHH-HHHHHHHhcCCCcEEEEcCCC--CCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcccccceecceE
Q 004609 415 FSGHIS-RIVDILELVSRESLVLIDEIG--SGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAAT 491 (742)
Q Consensus 415 fSgg~k-rl~~~~~l~~~~~LlLLDEp~--~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~l~~~a~~~~~i~~g~~ 491 (742)
+|+.++ ....+.....+|+++|+|||+ .++|+.....|.. +.+.+.++|+|+|+..+..+++++..+.++.+
T Consensus 79 lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~~~~l~~-----~~~~~~~~i~v~h~~~~~~~~~~i~~~~~~~i 153 (174)
T PRK13695 79 LEDLERIGIPALERALEEADVIIIDEIGKMELKSPKFVKAVEE-----VLDSEKPVIATLHRRSVHPFVQEIKSRPGGRV 153 (174)
T ss_pred hHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHHHHHHHHH-----HHhCCCeEEEEECchhhHHHHHHHhccCCcEE
Confidence 888888 666677777899999999964 3555554444443 22448899999999777788888888777765
|
|
| >TIGR02858 spore_III_AA stage III sporulation protein AA | Back alignment and domain information |
|---|
Probab=98.94 E-value=3e-09 Score=112.86 Aligned_cols=112 Identities=19% Similarity=0.208 Sum_probs=66.9
Q ss_pred eEEEEEeCCCCCcchHHhhHHhhhhhhhhceeecCCCCC-----CchHHH---HHHHHcC-Cc-cccccccccchHHHH-
Q 004609 352 RVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHP-----RLPWFD---LILADIG-DH-QSLEQNLSTFSGHIS- 420 (742)
Q Consensus 352 ~~~~ItGpNGsGKSTlLK~lGli~~maq~G~~vPa~~~~-----~i~~~d---~il~~ig-~~-~~~~~~lstfSgg~k- 420 (742)
.-++|+||||+||||||+++ +|...|..|.. .+..++ .+...++ .. ..+....+.+.+-.+
T Consensus 112 ~~~~i~g~~g~GKttl~~~l--------~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~ 183 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDL--------ARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKA 183 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHH--------hCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHH
Confidence 46899999999999999999 77777765521 222222 2322221 11 122223333333223
Q ss_pred HHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh
Q 004609 421 RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCL 479 (742)
Q Consensus 421 rl~~~~~l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~l~~~ 479 (742)
.-...+..+.+|+++|+|||++. ....++++.+. .|.++|+|||+..+...
T Consensus 184 ~~~~~~i~~~~P~villDE~~~~-------e~~~~l~~~~~-~G~~vI~ttH~~~~~~~ 234 (270)
T TIGR02858 184 EGMMMLIRSMSPDVIVVDEIGRE-------EDVEALLEALH-AGVSIIATAHGRDVEDL 234 (270)
T ss_pred HHHHHHHHhCCCCEEEEeCCCcH-------HHHHHHHHHHh-CCCEEEEEechhHHHHH
Confidence 12223444579999999999742 22334555554 58999999998766444
|
Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation. |
| >cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.3e-08 Score=99.49 Aligned_cols=120 Identities=16% Similarity=0.132 Sum_probs=78.1
Q ss_pred EEEEeCCCCCcchHHhhHHhhhh-hhhhceeecCCCCCCchHHHHHHHHcC----------CccccccccccchHHHHH-
Q 004609 354 VVITGPNTGGKTASMKTLGLASL-MSKAGLYLPAKNHPRLPWFDLILADIG----------DHQSLEQNLSTFSGHISR- 421 (742)
Q Consensus 354 ~~ItGpNGsGKSTlLK~lGli~~-maq~G~~vPa~~~~~i~~~d~il~~ig----------~~~~~~~~lstfSgg~kr- 421 (742)
++|.||.|+|||||.-.+..-.. -...++|+..+. ...-+...+..+| .....+..+..+|+++.+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~--~~~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~s~~~~~~ 79 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEE--SPEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESSL 79 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCC--CHHHHHHHHHHcCCChHHHHhcCCeEEEecCccccchhhhhh
Confidence 68999999999999887733222 122344554433 1222222223333 334456677788888765
Q ss_pred ----HHHH--HHhcCCCcEEEEcCCCCCCC---HHHHHHHHHHHHHHHhcCCcEEEEEecChhh
Q 004609 422 ----IVDI--LELVSRESLVLIDEIGSGTD---PSEGVALATSILQYLRDRVGLAVVTTHYADL 476 (742)
Q Consensus 422 ----l~~~--~~l~~~~~LlLLDEp~~glD---p~~~~aL~~all~~l~~~~~~vlitTH~~~l 476 (742)
+..+ .....+|+++++|||++.+| +.....+.. ++..+++.|.++|+++|+...
T Consensus 80 ~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~-l~~~l~~~g~tvi~v~~~~~~ 142 (187)
T cd01124 80 RLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRR-LLFALKRFGVTTLLTSEQSGL 142 (187)
T ss_pred hHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHH-HHHHHHHCCCEEEEEeccccC
Confidence 1222 22356899999999999999 666666655 777788889999999998653
|
A related protein is found in archaea. |
| >PRK08533 flagellar accessory protein FlaH; Reviewed | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.7e-08 Score=103.39 Aligned_cols=121 Identities=12% Similarity=0.228 Sum_probs=70.7
Q ss_pred ccCCceEEEEEeCCCCCcchH-HhhH-HhhhhhhhhceeecCCCCCCchHHHHHHHHcCCc--cc--------ccccccc
Q 004609 347 VECETRVVVITGPNTGGKTAS-MKTL-GLASLMSKAGLYLPAKNHPRLPWFDLILADIGDH--QS--------LEQNLST 414 (742)
Q Consensus 347 l~~g~~~~~ItGpNGsGKSTl-LK~l-Gli~~maq~G~~vPa~~~~~i~~~d~il~~ig~~--~~--------~~~~lst 414 (742)
+++| .+++|+||||+||||+ ++.+ +++. -...+.|+..+. ..-.++.++ ..+|.. +. +.-. ..
T Consensus 21 i~~g-~~~~i~G~~G~GKTtl~~~~~~~~~~-~g~~~~yi~~e~-~~~~~~~~~-~~~g~~~~~~~~~~~l~~~~~~-~~ 95 (230)
T PRK08533 21 IPAG-SLILIEGDESTGKSILSQRLAYGFLQ-NGYSVSYVSTQL-TTTEFIKQM-MSLGYDINKKLISGKLLYIPVY-PL 95 (230)
T ss_pred CCCC-cEEEEECCCCCCHHHHHHHHHHHHHh-CCCcEEEEeCCC-CHHHHHHHH-HHhCCchHHHhhcCcEEEEEec-cc
Confidence 6788 8999999999999999 5665 3221 223345665443 222333332 334431 11 0111 12
Q ss_pred chHHHH---HHHHHHHh--cCCCcEEEEcCCCCCC----CHHHHHHHHHHHHHHHhcCCcEEEEEecCh
Q 004609 415 FSGHIS---RIVDILEL--VSRESLVLIDEIGSGT----DPSEGVALATSILQYLRDRVGLAVVTTHYA 474 (742)
Q Consensus 415 fSgg~k---rl~~~~~l--~~~~~LlLLDEp~~gl----Dp~~~~aL~~all~~l~~~~~~vlitTH~~ 474 (742)
+|+... .+..++.. ..+|+++++|||++++ |+.....+.. ++..+.+.|.++++ ||+.
T Consensus 96 ~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~-~l~~l~~~g~tvi~-t~~~ 162 (230)
T PRK08533 96 LSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVAVNDLMA-FFKRISSLNKVIIL-TANP 162 (230)
T ss_pred ccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHHHHHHHH-HHHHHHhCCCEEEE-Eecc
Confidence 344322 23333222 3579999999999999 7777777766 66767776776655 5553
|
|
| >PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.3e-08 Score=103.35 Aligned_cols=65 Identities=28% Similarity=0.305 Sum_probs=46.4
Q ss_pred ccccchHHHHHH-HHHHHhc--CCC-cEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChhh
Q 004609 411 NLSTFSGHISRI-VDILELV--SRE-SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL 476 (742)
Q Consensus 411 ~lstfSgg~krl-~~~~~l~--~~~-~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~l 476 (742)
+++.+|.|++++ .++..+. ... .++++|||-+||.|.-...|.. ++..+.+.+.-+|+|||...+
T Consensus 233 ~~~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~-~l~~~~~~~~QviitTHSp~i 301 (303)
T PF13304_consen 233 PLSSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIE-LLKELSKKNIQVIITTHSPFI 301 (303)
T ss_dssp GGS---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHH-HHHHTGGGSSEEEEEES-GGG
T ss_pred eeccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHH-HHHhhCccCCEEEEeCccchh
Confidence 456679999976 4444433 333 9999999999999999999997 455555556789999999764
|
|
| >TIGR00634 recN DNA repair protein RecN | Back alignment and domain information |
|---|
Probab=98.70 E-value=6.3e-08 Score=113.29 Aligned_cols=115 Identities=19% Similarity=0.247 Sum_probs=84.5
Q ss_pred ccchHHHH-HHHHHHHhcCC----CcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhccccccee
Q 004609 413 STFSGHIS-RIVDILELVSR----ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFE 487 (742)
Q Consensus 413 stfSgg~k-rl~~~~~l~~~----~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~l~~~a~~~~~i~ 487 (742)
.++||||+ |+.++++++.. |+++|||||++|+|+.....+.. ++..+.+ +.+||++||++.+..+|++++.+.
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~-~l~~l~~-~~~vi~iTH~~~~~~~ad~~~~l~ 516 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAK-KLAQLSE-RHQVLCVTHLPQVAAHADAHFKVE 516 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHhc-CCEEEEEEChHHHHHhcCeEEEEE
Confidence 58999999 89999887764 68999999999999999999998 5555665 789999999999888999988887
Q ss_pred cceEEEecCccccchhhhcCCCCCchHHHHHHHCC---CCHHHHHHHHHHH
Q 004609 488 NAATEFSLETLRPTYRILWGSTGDSNALNIAKSIG---FDRKIIQRAQKLV 535 (742)
Q Consensus 488 ~g~~~~~~~~l~~~y~l~~g~~~~s~a~~ia~~~g---l~~~ii~~A~~~~ 535 (742)
++.. +..+..... ...+...-.+||+++| +.+..+..|++++
T Consensus 517 k~~~--~~~t~s~i~----~L~~~~r~~EiArml~G~~~t~~~~~~A~~ll 561 (563)
T TIGR00634 517 KEGL--DGRTATRVR----PLSGEERVAELARMLAGLEKSDLTLAHAQELL 561 (563)
T ss_pred EccC--CCcEEEEEE----ECCccHHHHHHHHHhCCCCccHHHHHHHHHHh
Confidence 6532 111211111 1233455678999884 3455566666654
|
All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair. |
| >cd01120 RecA-like_NTPases RecA-like NTPases | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.6e-07 Score=90.06 Aligned_cols=121 Identities=13% Similarity=0.105 Sum_probs=69.2
Q ss_pred EEEEEeCCCCCcchHHhhH-HhhhhhhhhceeecCCCCCCchHHHHH--HHHcCCccc---cccccccchHHH-HHHHHH
Q 004609 353 VVVITGPNTGGKTASMKTL-GLASLMSKAGLYLPAKNHPRLPWFDLI--LADIGDHQS---LEQNLSTFSGHI-SRIVDI 425 (742)
Q Consensus 353 ~~~ItGpNGsGKSTlLK~l-Gli~~maq~G~~vPa~~~~~i~~~d~i--l~~ig~~~~---~~~~lstfSgg~-krl~~~ 425 (742)
+++|+||||+||||+++.+ +....-.....|+..+.. ........ +...+..+. ........+... .+....
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEE-IEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAER 79 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcc-hHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHH
Confidence 3689999999999999999 222222222234443321 11111111 111111111 111112222332 256666
Q ss_pred HHhcCCCcEEEEcCCCCCC----------CHHHHHHHHHHHHHHHhcCCcEEEEEecChh
Q 004609 426 LELVSRESLVLIDEIGSGT----------DPSEGVALATSILQYLRDRVGLAVVTTHYAD 475 (742)
Q Consensus 426 ~~l~~~~~LlLLDEp~~gl----------Dp~~~~aL~~all~~l~~~~~~vlitTH~~~ 475 (742)
.....++.++++|||++-+ ++.....+. .+...+.+.+.++|+++|...
T Consensus 80 ~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~-~l~~~~~~~~~~vv~~~~~~~ 138 (165)
T cd01120 80 LRERGGDDLIILDELTRLVRALREIREGYPGELDEELR-ELLERARKGGVTVIFTLQVPS 138 (165)
T ss_pred HHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHH-HHHHHHhcCCceEEEEEecCC
Confidence 7778899999999999544 433344444 477777777899999999864
|
This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. |
| >PRK10869 recombination and repair protein; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.5e-07 Score=109.76 Aligned_cols=115 Identities=15% Similarity=0.224 Sum_probs=84.0
Q ss_pred ccchHHHH-HHHHHHHhcC----CCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhccccccee
Q 004609 413 STFSGHIS-RIVDILELVS----RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFE 487 (742)
Q Consensus 413 stfSgg~k-rl~~~~~l~~----~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~l~~~a~~~~~i~ 487 (742)
..+||||+ |+.+++.++. +|+++|||||++|+|+.....++. ++..+.+ +.+||++||++.+..+|++++.+.
T Consensus 429 k~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~-~l~~l~~-~~qvi~iTH~~~~~~~ad~~~~v~ 506 (553)
T PRK10869 429 KVASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGK-LLRQLGE-STQVMCVTHLPQVAGCGHQHFFVS 506 (553)
T ss_pred hhCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHhc-CCEEEEEecCHHHHHhCCEEEEEe
Confidence 37999999 9999988775 689999999999999999999998 5556655 689999999999889999988877
Q ss_pred cceEEEecCccccchhhhcCCCCCchHHHHHHHCC---CCHHHHHHHHHHH
Q 004609 488 NAATEFSLETLRPTYRILWGSTGDSNALNIAKSIG---FDRKIIQRAQKLV 535 (742)
Q Consensus 488 ~g~~~~~~~~l~~~y~l~~g~~~~s~a~~ia~~~g---l~~~ii~~A~~~~ 535 (742)
.+.. ...+ |.-..-..+.....+||+++| +.+..+..|++++
T Consensus 507 k~~~--~~~t----~s~i~~L~~~~R~~EiARMl~G~~~t~~~~~~A~eLl 551 (553)
T PRK10869 507 KETD--GGMT----ETHMQPLDKKARLQELARLLGGSEVTRNTLANAKELL 551 (553)
T ss_pred cccc--CCee----eEEEEECChhHHHHHHHHHhCCCCCCHHHHHHHHHHh
Confidence 6431 1111 111111233456678999884 2455566666654
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.60 E-value=8.8e-08 Score=116.80 Aligned_cols=152 Identities=21% Similarity=0.258 Sum_probs=114.8
Q ss_pred cccccccCCceEEEEEeCCCCCcchHHhhH-Hhhh-hhhhhc------------------eeecCCCCCCch--------
Q 004609 342 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLAS-LMSKAG------------------LYLPAKNHPRLP-------- 393 (742)
Q Consensus 342 ~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~-~maq~G------------------~~vPa~~~~~i~-------- 393 (742)
|++.-+++| +++.+.||.|||||||||.+ |-.. ..-..| .|.++.. ..++
T Consensus 133 ~~sg~~~pg-~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~D-vH~p~lTVreTl 210 (1391)
T KOG0065|consen 133 DISGIIKPG-EMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQD-VHFPELTVRETL 210 (1391)
T ss_pred CcceeEcCC-ceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccc-cccceeEEeehh
Confidence 899999999 99999999999999999999 2221 110011 1222221 1111
Q ss_pred ------------------------HHHHHHHHcCCcccc-----ccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCC
Q 004609 394 ------------------------WFDLILADIGDHQSL-----EQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSG 443 (742)
Q Consensus 394 ------------------------~~d~il~~ig~~~~~-----~~~lstfSgg~k-rl~~~~~l~~~~~LlLLDEp~~g 443 (742)
..|.++..+|+..-. +....-.||||+ |+..+-.++.+++++.+||+|+|
T Consensus 211 dFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~t~G 290 (1391)
T KOG0065|consen 211 DFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEITRG 290 (1391)
T ss_pred hHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeeccccc
Confidence 234667778876544 345677999999 99999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEecChh--hhhhcccccceecceEEEec
Q 004609 444 TDPSEGVALATSILQYLRDRVGLAVVTTHYAD--LSCLKDKDTRFENAATEFSL 495 (742)
Q Consensus 444 lDp~~~~aL~~all~~l~~~~~~vlitTH~~~--l~~~a~~~~~i~~g~~~~~~ 495 (742)
||....-.+..++....+..+.|++++-|... .-.+-|.+..+.+|...|..
T Consensus 291 LDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~G 344 (1391)
T KOG0065|consen 291 LDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQG 344 (1391)
T ss_pred ccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEec
Confidence 99999999999777766666788888888853 56677888889999888763
|
|
| >TIGR00618 sbcc exonuclease SbcC | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.1e-07 Score=118.96 Aligned_cols=82 Identities=16% Similarity=0.060 Sum_probs=67.4
Q ss_pred ccccccccccchHHHH-HHHHHHHhcC----------CCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecC
Q 004609 405 HQSLEQNLSTFSGHIS-RIVDILELVS----------RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHY 473 (742)
Q Consensus 405 ~~~~~~~lstfSgg~k-rl~~~~~l~~----------~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~ 473 (742)
.....+++.+|||||+ +++++++++. +|++|||||||+|+|+.....+.. ++..+...|.+|+|+||+
T Consensus 941 ~~~~~r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~-~l~~l~~~g~~i~iisH~ 1019 (1042)
T TIGR00618 941 YTGSVRPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIG-ILDAIREGSKMIGIISHV 1019 (1042)
T ss_pred CCCCcCCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEeCc
Confidence 3455678999999999 8888877763 799999999999999999999998 556676778899999999
Q ss_pred hhhh-hhccccccee
Q 004609 474 ADLS-CLKDKDTRFE 487 (742)
Q Consensus 474 ~~l~-~~a~~~~~i~ 487 (742)
.++. .+++++.++.
T Consensus 1020 ~~~~~~~~~~i~v~~ 1034 (1042)
T TIGR00618 1020 PEFRERIPHRILVKK 1034 (1042)
T ss_pred HHHHHhhCCEEEEEE
Confidence 9865 4677666554
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.3e-07 Score=103.23 Aligned_cols=122 Identities=20% Similarity=0.239 Sum_probs=93.6
Q ss_pred cCCceEEEEEeCCCCCcchHHhhHHhhhhhhhhceeecCCCC----------------------------------CCch
Q 004609 348 ECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNH----------------------------------PRLP 393 (742)
Q Consensus 348 ~~g~~~~~ItGpNGsGKSTlLK~lGli~~maq~G~~vPa~~~----------------------------------~~i~ 393 (742)
.+| ++++++|-||-||||.||.+ +|-..|.-|. ....
T Consensus 98 rpg-~vlglvgtngigkstAlkil--------agk~kpnlg~~~~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQ 168 (592)
T KOG0063|consen 98 RPG-QVLGLVGTNGIGKSTALKIL--------AGKQKPNLGRYDNPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQ 168 (592)
T ss_pred Ccc-hhccccccCcccHHHHHHHH--------hCCCCCCCCCCCCCcchHHHhhhhhhHHHhhhhhhhccccccCcCChH
Confidence 357 89999999999999999999 4433333221 1112
Q ss_pred HHHH------------------------HHHHcCCccccccccccchHHHH-HHHHHHHhcCCCcEEEEcCCCCCCCHHH
Q 004609 394 WFDL------------------------ILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSE 448 (742)
Q Consensus 394 ~~d~------------------------il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~~~~~LlLLDEp~~glDp~~ 448 (742)
++|+ +...+.+...+++....+|||+- |.+++.+.+...++.++|||.+-||...
T Consensus 169 yvd~ipr~~k~~v~~~l~~~~~r~~~~~~~~~~~L~~~~~re~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQ 248 (592)
T KOG0063|consen 169 YVDQIPRAVKGTVGSLLDRKDERDNKEEVCDQLDLNNLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQ 248 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhHHHhhhhhcccchhhhhhhhhhhhhhcceeEecCCcccchHHH
Confidence 2332 23344455667888999999987 8999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEecChhhhhh
Q 004609 449 GVALATSILQYLRDRVGLAVVTTHYADLSCL 479 (742)
Q Consensus 449 ~~aL~~all~~l~~~~~~vlitTH~~~l~~~ 479 (742)
+...+. .++.+..-...+|++.||+.+..|
T Consensus 249 RLkaA~-~IRsl~~p~~YiIVVEHDLsVLDy 278 (592)
T KOG0063|consen 249 RLKAAI-TIRSLINPDRYIIVVEHDLSVLDY 278 (592)
T ss_pred hhhHHH-HHHHhhCCCCeEEEEEeechHHHh
Confidence 999887 555666667899999999985543
|
|
| >PRK07721 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.2e-06 Score=99.01 Aligned_cols=141 Identities=16% Similarity=0.112 Sum_probs=92.6
Q ss_pred cccccccCCceEEEEEeCCCCCcchHHhhHHhhhhhhhhceeecCCCCCCc-----hHHHHHHH-HcCCcccccc-----
Q 004609 342 PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRL-----PWFDLILA-DIGDHQSLEQ----- 410 (742)
Q Consensus 342 ~i~l~l~~g~~~~~ItGpNGsGKSTlLK~lGli~~maq~G~~vPa~~~~~i-----~~~d~il~-~ig~~~~~~~----- 410 (742)
++ +.+.+| ++++|+||||+||||||+++ +|...|..+...+ .-+.+++. .++.. .+.+
T Consensus 151 ~l-~~i~~G-q~i~I~G~sG~GKStLl~~I--------~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~-~l~r~v~vv 219 (438)
T PRK07721 151 SL-LTVGKG-QRVGIFAGSGVGKSTLMGMI--------ARNTSADLNVIALIGERGREVREFIERDLGPE-GLKRSIVVV 219 (438)
T ss_pred ee-eeecCC-cEEEEECCCCCCHHHHHHHH--------hcccCCCeEEEEEEecCCccHHHHHHhhcChh-hhcCeEEEE
Confidence 55 999999 99999999999999999999 4444333221000 00112211 12221 1222
Q ss_pred ccccchHHHH-HHHHH-HHh------cCCCcEEEEc-----------------CC--CCCCCHHHHHHHHHHHHHHHhc-
Q 004609 411 NLSTFSGHIS-RIVDI-LEL------VSRESLVLID-----------------EI--GSGTDPSEGVALATSILQYLRD- 462 (742)
Q Consensus 411 ~lstfSgg~k-rl~~~-~~l------~~~~~LlLLD-----------------Ep--~~glDp~~~~aL~~all~~l~~- 462 (742)
..+.=|..++ +...+ .+. -...-||++| || ++|+||.....+.. +++.+..
T Consensus 220 ~~~~~~~~~r~~~~~~a~~iAEyfr~~g~~Vll~~Dsltr~A~A~rEisl~~ge~P~~~G~dp~~~~~l~~-ller~~~~ 298 (438)
T PRK07721 220 ATSDQPALMRIKGAYTATAIAEYFRDQGLNVMLMMDSVTRVAMAQREIGLAVGEPPTTKGYTPSVFAILPK-LLERTGTN 298 (438)
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeChHHHHHHHHHHHHhcCCCCccccCCHHHHHHHHH-HHHHhcCC
Confidence 2244455555 33322 211 2445588899 75 78999999999988 7777763
Q ss_pred -CCc-----EEEEEecChhhhhhcccccceecceEEEec
Q 004609 463 -RVG-----LAVVTTHYADLSCLKDKDTRFENAATEFSL 495 (742)
Q Consensus 463 -~~~-----~vlitTH~~~l~~~a~~~~~i~~g~~~~~~ 495 (742)
.|. ||++.|||++ ..+|++...+.+|++.++.
T Consensus 299 ~~GsIT~~~TVlv~~hdm~-e~i~d~v~~i~dG~Ivls~ 336 (438)
T PRK07721 299 ASGSITAFYTVLVDGDDMN-EPIADTVRGILDGHFVLDR 336 (438)
T ss_pred CCCCeeeEEEEEEECCCCC-chhhhhEEEecCEEEEEec
Confidence 463 8999999987 4789999999999998874
|
|
| >PHA02562 46 endonuclease subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.8e-07 Score=109.35 Aligned_cols=88 Identities=23% Similarity=0.263 Sum_probs=69.8
Q ss_pred HHHHHHHcCCccccccccccchHHHH-HHHHHHHhc----------CCCcEEEEcCCC-CCCCHHHHHHHHHHHHHHHhc
Q 004609 395 FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELV----------SRESLVLIDEIG-SGTDPSEGVALATSILQYLRD 462 (742)
Q Consensus 395 ~d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~----------~~~~LlLLDEp~-~glDp~~~~aL~~all~~l~~ 462 (742)
++..+...|.. ...+.+|||||+ |++++++++ .+|+++|||||| +++|+.....+.. ++..+
T Consensus 452 ~~~~~~~~g~~---~~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~-~l~~~-- 525 (562)
T PHA02562 452 FNETIKSRGRE---DFSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLS-ILDSL-- 525 (562)
T ss_pred hhhHHhcCCCC---ccChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHH-HHHhC--
Confidence 33444445543 337899999999 888887776 589999999998 7899999999988 55555
Q ss_pred CCcEEEEEecChhhhhhcccccceec
Q 004609 463 RVGLAVVTTHYADLSCLKDKDTRFEN 488 (742)
Q Consensus 463 ~~~~vlitTH~~~l~~~a~~~~~i~~ 488 (742)
.+.++|++||+.++...+++++.+.+
T Consensus 526 ~~~~iiiish~~~~~~~~d~~~~l~~ 551 (562)
T PHA02562 526 KDTNVFVISHKDHDPQKFDRHLKMEK 551 (562)
T ss_pred CCCeEEEEECchhchhhhhcEEEEEE
Confidence 47899999999887788888877765
|
|
| >PRK06067 flagellar accessory protein FlaH; Validated | Back alignment and domain information |
|---|
Probab=98.49 E-value=7.3e-07 Score=92.63 Aligned_cols=125 Identities=15% Similarity=0.196 Sum_probs=74.3
Q ss_pred ccCCceEEEEEeCCCCCcchHHhhHHhhhh-hhhhceeecCCCCCCchHHHHHHHHcCC--ccccc-----------ccc
Q 004609 347 VECETRVVVITGPNTGGKTASMKTLGLASL-MSKAGLYLPAKNHPRLPWFDLILADIGD--HQSLE-----------QNL 412 (742)
Q Consensus 347 l~~g~~~~~ItGpNGsGKSTlLK~lGli~~-maq~G~~vPa~~~~~i~~~d~il~~ig~--~~~~~-----------~~l 412 (742)
+++| .++.|+||+|+|||||...+..-.+ ....++|+-.+. ..-.+..+ +..+|. .+.+. ...
T Consensus 22 ~~~g-~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~-~~~~~~~~-~~~~g~~~~~~~~~g~l~i~~~~~~~~ 98 (234)
T PRK06067 22 IPFP-SLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTEN-TSKSYLKQ-MESVKIDISDFFLWGYLRIFPLNTEGF 98 (234)
T ss_pred CcCC-cEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCC-CHHHHHHH-HHHCCCChhHHHhCCCceEEecccccc
Confidence 4567 8999999999999999999833221 234456666654 22222222 233332 11111 112
Q ss_pred ccchHHHH-HHHHHHHhcC--CCcEEEEcCCCCCC---CHHHHHHHHHHHHHHHhcCCcEEEEEecChh
Q 004609 413 STFSGHIS-RIVDILELVS--RESLVLIDEIGSGT---DPSEGVALATSILQYLRDRVGLAVVTTHYAD 475 (742)
Q Consensus 413 stfSgg~k-rl~~~~~l~~--~~~LlLLDEp~~gl---Dp~~~~aL~~all~~l~~~~~~vlitTH~~~ 475 (742)
+..+.++. .+..+...+. +|+++++|||+..+ |+..-..+.. .+..+.+.++++++++|...
T Consensus 99 ~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~-~l~~l~~~g~tvllt~~~~~ 166 (234)
T PRK06067 99 EWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLT-EAKNLVDLGKTILITLHPYA 166 (234)
T ss_pred ccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHH-HHHHHHhCCCEEEEEecCCc
Confidence 23344555 4555555544 89999999999654 4444334433 34455667889999999754
|
|
| >PRK01156 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=4.8e-07 Score=111.64 Aligned_cols=79 Identities=19% Similarity=0.202 Sum_probs=65.0
Q ss_pred ccccccchHHHH-HHHHH------HHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCC--cEEEEEecChhhhhh
Q 004609 409 EQNLSTFSGHIS-RIVDI------LELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRV--GLAVVTTHYADLSCL 479 (742)
Q Consensus 409 ~~~lstfSgg~k-rl~~~------~~l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~--~~vlitTH~~~l~~~ 479 (742)
..++..||||++ +++++ ++++.+|++++|||||+|||+.....+...+...+...+ .++|++||+.++..+
T Consensus 796 ~~~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~~~ 875 (895)
T PRK01156 796 VEGIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRELLSV 875 (895)
T ss_pred cCccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchHHHHh
Confidence 357889999998 77654 667889999999999999999999999885544455543 379999999998889
Q ss_pred ccccccee
Q 004609 480 KDKDTRFE 487 (742)
Q Consensus 480 a~~~~~i~ 487 (742)
|++++.+.
T Consensus 876 ~d~ii~~~ 883 (895)
T PRK01156 876 ADVAYEVK 883 (895)
T ss_pred cCeEEEEE
Confidence 99988776
|
|
| >PRK03918 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=3.9e-07 Score=112.16 Aligned_cols=78 Identities=19% Similarity=0.190 Sum_probs=64.3
Q ss_pred ccccccchHHHH-HHHHH------HHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcc
Q 004609 409 EQNLSTFSGHIS-RIVDI------LELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKD 481 (742)
Q Consensus 409 ~~~lstfSgg~k-rl~~~------~~l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~l~~~a~ 481 (742)
..++.+|||||+ +++++ ++++.+|+++||||||+|+|+.....+...+.. +...+.++|++||+.++..+|+
T Consensus 783 ~~~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~-~~~~~~~iiiith~~~~~~~~d 861 (880)
T PRK03918 783 ERPLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMER-YLRKIPQVIIVSHDEELKDAAD 861 (880)
T ss_pred cCChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHH-HHhcCCEEEEEECCHHHHHhCC
Confidence 467889999998 55544 356789999999999999999999999985544 4555779999999999888888
Q ss_pred ccccee
Q 004609 482 KDTRFE 487 (742)
Q Consensus 482 ~~~~i~ 487 (742)
+++.+.
T Consensus 862 ~~~~l~ 867 (880)
T PRK03918 862 YVIRVS 867 (880)
T ss_pred eEEEEE
Confidence 887765
|
|
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=98.41 E-value=2.6e-06 Score=78.43 Aligned_cols=116 Identities=20% Similarity=0.217 Sum_probs=65.2
Q ss_pred eEEEEEeCCCCCcchHHhhHHhhhhhhh-hceeecCCCCCCchHHHHHHHHcCCccccccccccchHHHH-HHHHHHHhc
Q 004609 352 RVVVITGPNTGGKTASMKTLGLASLMSK-AGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELV 429 (742)
Q Consensus 352 ~~~~ItGpNGsGKSTlLK~lGli~~maq-~G~~vPa~~~~~i~~~d~il~~ig~~~~~~~~lstfSgg~k-rl~~~~~l~ 429 (742)
..++|+||+|+||||+++.+........ ...++..+.......+... ...........++.+. +.....+..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLL------LIIVGGKKASGSGELRLRLALALARK 76 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHH------hhhhhccCCCCCHHHHHHHHHHHHHh
Confidence 6789999999999999999932221111 1122222211111111111 1122223334444444 544445555
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHH-----HHHHHHhcCCcEEEEEecC
Q 004609 430 SRESLVLIDEIGSGTDPSEGVALAT-----SILQYLRDRVGLAVVTTHY 473 (742)
Q Consensus 430 ~~~~LlLLDEp~~glDp~~~~aL~~-----all~~l~~~~~~vlitTH~ 473 (742)
..+.++++||+..-.+......... .........+..+|+++|.
T Consensus 77 ~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 77 LKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND 125 (148)
T ss_pred cCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeCC
Confidence 5579999999999999988776543 1233333446678888884
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >PRK06793 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.40 E-value=4.3e-07 Score=101.92 Aligned_cols=152 Identities=10% Similarity=0.083 Sum_probs=90.5
Q ss_pred eeeeecC--CceecccccccCCceEEEEEeCCCCCcchHHhhH-Hhhhhhhhhce--eecCCCCCCc-hHHHHHHHHcCC
Q 004609 331 SLSKGIS--DFPVPIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMSKAGL--YLPAKNHPRL-PWFDLILADIGD 404 (742)
Q Consensus 331 nl~~~y~--~~~v~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l-Gli~~maq~G~--~vPa~~~~~i-~~~d~il~~ig~ 404 (742)
.++..|. -+.++..+.+.+| +.++|+||||+|||||++++ +.... ..|. ++...+ ..+ .++...+..-|.
T Consensus 135 ~i~~~l~TGiraID~ll~I~~G-qri~I~G~sG~GKTtLl~~Ia~~~~~--~~gvI~~iGerg-~ev~e~~~~~l~~~gl 210 (432)
T PRK06793 135 EITDVFETGIKSIDSMLTIGIG-QKIGIFAGSGVGKSTLLGMIAKNAKA--DINVISLVGERG-REVKDFIRKELGEEGM 210 (432)
T ss_pred chhhccCCCCEEEeccceecCC-cEEEEECCCCCChHHHHHHHhccCCC--CeEEEEeCCCCc-ccHHHHHHHHhhhccc
Confidence 3444442 2455777999999 89999999999999999999 22211 1111 111111 111 122333333232
Q ss_pred cc-ccccccccchHHHH-HHHHHHHhc-------CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh
Q 004609 405 HQ-SLEQNLSTFSGHIS-RIVDILELV-------SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD 475 (742)
Q Consensus 405 ~~-~~~~~lstfSgg~k-rl~~~~~l~-------~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~ 475 (742)
.. -+-...+.-|.+++ +...+.... .++-||++|+||++.|+. ..+.. .+...-..|.+..+.||...
T Consensus 211 ~~tvvv~~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDslTr~a~A~--reisl-~~~e~p~~G~~~~~~s~l~~ 287 (432)
T PRK06793 211 RKSVVVVATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFADAR--RSVDI-AVKELPIGGKTLLMESYMKK 287 (432)
T ss_pred ceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecchHHHHHHH--HHHHH-HhcCCCCCCeeeeeeccchh
Confidence 22 13355688889998 666664433 688899999999999996 44433 23333333567777788555
Q ss_pred hhhhcccccceecceEE
Q 004609 476 LSCLKDKDTRFENAATE 492 (742)
Q Consensus 476 l~~~a~~~~~i~~g~~~ 492 (742)
+..-+.. ...|++.
T Consensus 288 L~ERag~---~~~GSiT 301 (432)
T PRK06793 288 LLERSGK---TQKGSIT 301 (432)
T ss_pred HHHHhcc---CCCcceE
Confidence 5444333 3466653
|
|
| >TIGR02788 VirB11 P-type DNA transfer ATPase VirB11 | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.6e-07 Score=100.22 Aligned_cols=125 Identities=10% Similarity=0.092 Sum_probs=70.2
Q ss_pred ccccccCCceEEEEEeCCCCCcchHHhhHHhhhhhhhhceeecCCCCCCchHHHHHHHH-cCCcccc---cc----cccc
Q 004609 343 IDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILAD-IGDHQSL---EQ----NLST 414 (742)
Q Consensus 343 i~l~l~~g~~~~~ItGpNGsGKSTlLK~lGli~~maq~G~~vPa~~~~~i~~~d~il~~-ig~~~~~---~~----~lst 414 (742)
+++.+..| ..++|+|||||||||||+++ ++.+.|..+-.. ++..... +.....+ .. ..+.
T Consensus 137 l~~~v~~~-~~ili~G~tGsGKTTll~al--------~~~~~~~~~iv~---ied~~El~~~~~~~~~l~~~~~~~~~~~ 204 (308)
T TIGR02788 137 LRLAIASR-KNIIISGGTGSGKTTFLKSL--------VDEIPKDERIIT---IEDTREIFLPHPNYVHLFYSKGGQGLAK 204 (308)
T ss_pred HHHHhhCC-CEEEEECCCCCCHHHHHHHH--------HccCCccccEEE---EcCccccCCCCCCEEEEEecCCCCCcCc
Confidence 44567778 89999999999999999999 665433332111 1111110 0000000 00 0111
Q ss_pred chHHHHHHHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcccccceecce
Q 004609 415 FSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAA 490 (742)
Q Consensus 415 fSgg~krl~~~~~l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~l~~~a~~~~~i~~g~ 490 (742)
++- .-.+..++..+|+++++|||.. ..... +++.+...+..++.|+|........++...+..++
T Consensus 205 ~~~---~~~l~~~Lr~~pd~ii~gE~r~-------~e~~~-~l~a~~~g~~~~i~T~Ha~~~~~~~~Rl~~l~~~~ 269 (308)
T TIGR02788 205 VTP---KDLLQSCLRMRPDRIILGELRG-------DEAFD-FIRAVNTGHPGSITTLHAGSPEEAFEQLALMVKSS 269 (308)
T ss_pred cCH---HHHHHHHhcCCCCeEEEeccCC-------HHHHH-HHHHHhcCCCeEEEEEeCCCHHHHHHHHHHHhhcc
Confidence 111 1122245678999999999995 12222 45555533335699999988666666665554443
|
The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA. |
| >PRK10246 exonuclease subunit SbcC; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=9.7e-07 Score=110.24 Aligned_cols=71 Identities=20% Similarity=0.067 Sum_probs=61.9
Q ss_pred cccccccchHHHH-HHHHHHHhcC--------CCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChhhhh
Q 004609 408 LEQNLSTFSGHIS-RIVDILELVS--------RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSC 478 (742)
Q Consensus 408 ~~~~lstfSgg~k-rl~~~~~l~~--------~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~l~~ 478 (742)
..+++.+|||||+ +++++++++. +|++|||||||+|||+.....+.. ++..+.+.|.+|+|+||..++..
T Consensus 943 ~~r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~-~l~~l~~~g~~v~iisH~~~l~~ 1021 (1047)
T PRK10246 943 AVRDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALD-ALDALNASGKTIGVISHVEAMKE 1021 (1047)
T ss_pred CCCCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHH-HHHHHHHCCCEEEEEecHHHHHH
Confidence 3578999999999 8888888874 799999999999999999999998 66778888999999999877654
Q ss_pred h
Q 004609 479 L 479 (742)
Q Consensus 479 ~ 479 (742)
.
T Consensus 1022 ~ 1022 (1047)
T PRK10246 1022 R 1022 (1047)
T ss_pred h
Confidence 3
|
|
| >PTZ00132 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.1e-06 Score=90.01 Aligned_cols=48 Identities=19% Similarity=0.037 Sum_probs=38.1
Q ss_pred ccchHH--HH-HHHHHHHhcCCCcEEEEcCCC-----CCCCHHHHHHHHHHHHHHHh
Q 004609 413 STFSGH--IS-RIVDILELVSRESLVLIDEIG-----SGTDPSEGVALATSILQYLR 461 (742)
Q Consensus 413 stfSgg--~k-rl~~~~~l~~~~~LlLLDEp~-----~glDp~~~~aL~~all~~l~ 461 (742)
|..+|+ ++ +..+++.++.+|+++++|||| +|+||.....+.+ ++..++
T Consensus 149 Sa~~~~~v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~-~~~~~~ 204 (215)
T PTZ00132 149 SAKSNYNFEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEK-ELQAAA 204 (215)
T ss_pred eCCCCCCHHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHH-HHHHHh
Confidence 444544 44 577888999999999999999 9999999999988 444443
|
|
| >TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.3e-06 Score=110.21 Aligned_cols=78 Identities=22% Similarity=0.201 Sum_probs=64.7
Q ss_pred cccccccchHHHH-HHHHHHHh----cCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhccc
Q 004609 408 LEQNLSTFSGHIS-RIVDILEL----VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDK 482 (742)
Q Consensus 408 ~~~~lstfSgg~k-rl~~~~~l----~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~l~~~a~~ 482 (742)
.+..+..|||||+ ++++++++ +.+|+++|||||++|+|+.....+.. ++..+.+ +.++||+||++.+..+|++
T Consensus 1083 ~~~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~-~~~~~~~-~~~~i~~sh~~~~~~~~d~ 1160 (1179)
T TIGR02168 1083 KNQNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFAN-LLKEFSK-NTQFIVITHNKGTMEVADQ 1160 (1179)
T ss_pred ccccccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHH-HHHHhcc-CCEEEEEEcChhHHHHhhh
Confidence 4567889999999 78888776 47789999999999999999999988 5555655 4789999999988788888
Q ss_pred cccee
Q 004609 483 DTRFE 487 (742)
Q Consensus 483 ~~~i~ 487 (742)
++.+.
T Consensus 1161 ~~~~~ 1165 (1179)
T TIGR02168 1161 LYGVT 1165 (1179)
T ss_pred Heeee
Confidence 76543
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. |
| >TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.9e-05 Score=94.18 Aligned_cols=44 Identities=18% Similarity=0.332 Sum_probs=32.8
Q ss_pred cEEEeeeeeecCCceecccccccCCceEEEEEeCCCCCcchHHhhH
Q 004609 326 EMTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTL 371 (742)
Q Consensus 326 ~l~~~nl~~~y~~~~v~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l 371 (742)
.+.+.|+...||.. .++|....+..+++|+||||+||||+|+++
T Consensus 5 ~l~l~nf~~~~~~~--~~~~~~~~~~~~~~i~G~Ng~GKttll~ai 48 (650)
T TIGR03185 5 QLTLENFGPYRGRQ--TFDLSPSSPKPIILIGGLNGAGKTTLLDAI 48 (650)
T ss_pred EEEEeceEEEcCCc--eeeeecCCCCeEEEEECCCCCCHHHHHHHH
Confidence 35677777655543 345555555459999999999999999998
|
This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria. |
| >TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.4e-05 Score=101.09 Aligned_cols=76 Identities=13% Similarity=0.077 Sum_probs=63.3
Q ss_pred cccccchHHHH-HHHHHHHhc----CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhccccc
Q 004609 410 QNLSTFSGHIS-RIVDILELV----SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDT 484 (742)
Q Consensus 410 ~~lstfSgg~k-rl~~~~~l~----~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~l~~~a~~~~ 484 (742)
++++.|||||+ ++++++.++ .+|+++|||||++|+|+.....+.. ++..+.. ++.+|++||+..+..+||+.+
T Consensus 1070 ~~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~-~l~~~~~-~~~~i~~t~~~~~~~~~d~~~ 1147 (1164)
T TIGR02169 1070 QRLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAK-LIREKAG-EAQFIVVSLRSPMIEYADRAI 1147 (1164)
T ss_pred CcchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHH-HHHHhcC-CCeEEEEECcHHHHHhcceeE
Confidence 56789999999 777777765 5789999999999999999999998 5555554 477999999988778888887
Q ss_pred cee
Q 004609 485 RFE 487 (742)
Q Consensus 485 ~i~ 487 (742)
.+.
T Consensus 1148 ~~~ 1150 (1164)
T TIGR02169 1148 GVT 1150 (1164)
T ss_pred eEE
Confidence 654
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. |
| >TIGR00606 rad50 rad50 | Back alignment and domain information |
|---|
Probab=98.23 E-value=3.4e-06 Score=107.88 Aligned_cols=75 Identities=16% Similarity=0.131 Sum_probs=60.6
Q ss_pred cccccccccchHHHHH-------HHHHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHh----cCCcEEEEEecCh
Q 004609 406 QSLEQNLSTFSGHISR-------IVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLR----DRVGLAVVTTHYA 474 (742)
Q Consensus 406 ~~~~~~lstfSgg~kr-------l~~~~~l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~----~~~~~vlitTH~~ 474 (742)
+......+.||||+++ ++++++++.+|.+|+|||||+|+|+.....|..++...+. ..|.++|++||+.
T Consensus 1191 ~~~~~~~~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~ 1270 (1311)
T TIGR00606 1191 DTALDMRGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDE 1270 (1311)
T ss_pred CeecCCCCCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCH
Confidence 3444455799999984 7788999999999999999999999999999987666543 2377999999998
Q ss_pred h-hhhhc
Q 004609 475 D-LSCLK 480 (742)
Q Consensus 475 ~-l~~~a 480 (742)
+ +..+|
T Consensus 1271 ~~~~~~~ 1277 (1311)
T TIGR00606 1271 DFVELLG 1277 (1311)
T ss_pred HHHHHHh
Confidence 7 44454
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >cd01131 PilT Pilus retraction ATPase PilT | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.4e-06 Score=88.54 Aligned_cols=115 Identities=17% Similarity=0.192 Sum_probs=58.9
Q ss_pred EEEEEeCCCCCcchHHhhH-HhhhhhhhhceeecCCCCCCchHHHHHHHHcCCccccccccccchHHHHHHHHHHHhcCC
Q 004609 353 VVVITGPNTGGKTASMKTL-GLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSR 431 (742)
Q Consensus 353 ~~~ItGpNGsGKSTlLK~l-Gli~~maq~G~~vPa~~~~~i~~~d~il~~ig~~~~~~~~lstfSgg~krl~~~~~l~~~ 431 (742)
+++|+||+||||||+++.+ +.+... ..+..+--+....+. .......+. ...+.....+|+.. +..++..+
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~-~~~~i~t~e~~~E~~-~~~~~~~i~-q~~vg~~~~~~~~~-----i~~aLr~~ 74 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKN-KTHHILTIEDPIEFV-HESKRSLIN-QREVGLDTLSFENA-----LKAALRQD 74 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhc-CCcEEEEEcCCcccc-ccCccceee-ecccCCCccCHHHH-----HHHHhcCC
Confidence 7899999999999999987 222110 011111111111100 000000000 00111112334332 23456678
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcccc
Q 004609 432 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKD 483 (742)
Q Consensus 432 ~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~l~~~a~~~ 483 (742)
|+++++|||. |+..... +++ ....|..++.|+|..+.....++.
T Consensus 75 pd~ii~gEir---d~e~~~~----~l~-~a~~G~~v~~t~Ha~~~~~~~~Rl 118 (198)
T cd01131 75 PDVILVGEMR---DLETIRL----ALT-AAETGHLVMSTLHTNSAAKTIDRI 118 (198)
T ss_pred cCEEEEcCCC---CHHHHHH----HHH-HHHcCCEEEEEecCCcHHHHHhHH
Confidence 9999999995 6654333 333 234588999999997755444444
|
PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility. |
| >COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.10 E-value=5e-06 Score=102.74 Aligned_cols=79 Identities=24% Similarity=0.209 Sum_probs=65.9
Q ss_pred ccccccchHHHH-HHHHHHHh------cCC--CcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh
Q 004609 409 EQNLSTFSGHIS-RIVDILEL------VSR--ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCL 479 (742)
Q Consensus 409 ~~~lstfSgg~k-rl~~~~~l------~~~--~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~l~~~ 479 (742)
-+++++||||++ .+++++++ ... -++++|||||.+||+.....++. +++.+...+.+|+|+||+.++...
T Consensus 810 ~r~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~-~l~~i~~~~~qiiIISH~eel~e~ 888 (908)
T COG0419 810 VRPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAE-ILEELLSDGRQIIIISHVEELKER 888 (908)
T ss_pred ccccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHH-HHHHHHhcCCeEEEEeChHHHHHh
Confidence 478999999999 66665443 234 58999999999999999999999 666677768999999999999999
Q ss_pred cccccceec
Q 004609 480 KDKDTRFEN 488 (742)
Q Consensus 480 a~~~~~i~~ 488 (742)
++..+.+..
T Consensus 889 ~~~~i~V~k 897 (908)
T COG0419 889 ADVRIRVKK 897 (908)
T ss_pred CCeEEEEEe
Confidence 988877654
|
|
| >cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase | Back alignment and domain information |
|---|
Probab=97.94 E-value=1.2e-05 Score=84.64 Aligned_cols=73 Identities=11% Similarity=0.099 Sum_probs=53.6
Q ss_pred cchHHH---------HHHHHHHHhcCCCcEEEEcCCCCCCCHHHHHH-HHHHHHHHHhcCCcEEEEEecChhhhhhcccc
Q 004609 414 TFSGHI---------SRIVDILELVSRESLVLIDEIGSGTDPSEGVA-LATSILQYLRDRVGLAVVTTHYADLSCLKDKD 483 (742)
Q Consensus 414 tfSgg~---------krl~~~~~l~~~~~LlLLDEp~~glDp~~~~a-L~~all~~l~~~~~~vlitTH~~~l~~~a~~~ 483 (742)
.+|||+ +++..++....++++.+| +|..+|+.+-.. + +++.+...+.+.|+.||.+......+.+
T Consensus 129 ~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l--~T~~~d~~~~~~~~---i~~~~~~~~~~~ivls~~la~~~~~paI 203 (249)
T cd01128 129 ILSGGVDANALHKPKRFFGAARNIEEGGSLTII--ATALVDTGSRMDDV---IFEEFKGTGNMELVLDRRLAERRIFPAI 203 (249)
T ss_pred CCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe--eeheecCCCcccch---HHHHHhcCCCcEEEEchHHhhCCCCCeE
Confidence 356777 478888887789999999 999999643332 2 2456665678999999998766677777
Q ss_pred cceecceE
Q 004609 484 TRFENAAT 491 (742)
Q Consensus 484 ~~i~~g~~ 491 (742)
..+..++.
T Consensus 204 ~vl~s~sr 211 (249)
T cd01128 204 DILKSGTR 211 (249)
T ss_pred EEcCCCCc
Confidence 77776654
|
It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain. |
| >cd01125 repA Hexameric Replicative Helicase RepA | Back alignment and domain information |
|---|
Probab=97.92 E-value=1.9e-05 Score=82.47 Aligned_cols=46 Identities=17% Similarity=0.154 Sum_probs=36.0
Q ss_pred cCCCcEEEEcCCCC------CCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh
Q 004609 429 VSRESLVLIDEIGS------GTDPSEGVALATSILQYLRDRVGLAVVTTHYAD 475 (742)
Q Consensus 429 ~~~~~LlLLDEp~~------glDp~~~~aL~~all~~l~~~~~~vlitTH~~~ 475 (742)
..+|.+|++| |.+ ..|+.....+...+.....+.++++|+++|...
T Consensus 109 ~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K 160 (239)
T cd01125 109 IRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRK 160 (239)
T ss_pred hcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCc
Confidence 5799999999 654 479988888887665555566899999999853
|
RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent. |
| >PRK02224 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=97.91 E-value=1.6e-05 Score=97.97 Aligned_cols=77 Identities=19% Similarity=0.119 Sum_probs=58.9
Q ss_pred cccccchHHHHH-HH------HHHHhcC-----CC-cEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCc-EEEEEecChh
Q 004609 410 QNLSTFSGHISR-IV------DILELVS-----RE-SLVLIDEIGSGTDPSEGVALATSILQYLRDRVG-LAVVTTHYAD 475 (742)
Q Consensus 410 ~~lstfSgg~kr-l~------~~~~l~~-----~~-~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~-~vlitTH~~~ 475 (742)
..++.||||+++ ++ ++..++. .| .++||||||+|+|+.....+.. ++..+...|. ++|++||+.+
T Consensus 777 ~~~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~-~l~~~~~~~~~qviiish~~~ 855 (880)
T PRK02224 777 LEPEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVD-LVESMRRLGVEQIVVVSHDDE 855 (880)
T ss_pred cChhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHH-HHHHHHhcCCCeEEEEECChH
Confidence 356899999984 33 3334443 22 6799999999999999999997 6666766554 7999999999
Q ss_pred hhhhccccccee
Q 004609 476 LSCLKDKDTRFE 487 (742)
Q Consensus 476 l~~~a~~~~~i~ 487 (742)
+...|++++.+.
T Consensus 856 ~~~~ad~~~~~~ 867 (880)
T PRK02224 856 LVGAADDLVRVE 867 (880)
T ss_pred HHHhcCeeEEee
Confidence 878888887765
|
|
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.90 E-value=3.7e-05 Score=90.32 Aligned_cols=89 Identities=26% Similarity=0.258 Sum_probs=74.4
Q ss_pred HHHcCCcc-ccccccccchHHHH-HHHHHHHhcCC--CcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCh
Q 004609 399 LADIGDHQ-SLEQNLSTFSGHIS-RIVDILELVSR--ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYA 474 (742)
Q Consensus 399 l~~ig~~~-~~~~~lstfSgg~k-rl~~~~~l~~~--~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~ 474 (742)
+.++|++- .+++...|||||+. |+.+|..+-++ .-+.+||||.-||-|.+-..|.. .+..|++.|.|+|+|.||.
T Consensus 465 L~~VGL~YLtL~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~-tL~~LRDlGNTviVVEHDe 543 (935)
T COG0178 465 LVDVGLGYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIE-TLKRLRDLGNTVIVVEHDE 543 (935)
T ss_pred HHHcCcCcccccccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHH-HHHHHHhcCCeEEEEecCH
Confidence 44556543 57899999999998 88888776443 35889999999999999999998 7778999999999999999
Q ss_pred hhhhhcccccceec
Q 004609 475 DLSCLKDKDTRFEN 488 (742)
Q Consensus 475 ~l~~~a~~~~~i~~ 488 (742)
+....||+++.+..
T Consensus 544 dti~~AD~iIDiGP 557 (935)
T COG0178 544 DTIRAADHIIDIGP 557 (935)
T ss_pred HHHhhcCEEEeeCC
Confidence 98888998876543
|
|
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Probab=97.86 E-value=7.1e-05 Score=69.56 Aligned_cols=106 Identities=22% Similarity=0.252 Sum_probs=57.6
Q ss_pred eEEEEEeCCCCCcchHHhhHHhhhh-hhhhceeecCCCCCCchHHHHHHHHcCCccccccccccchHHHHHHHHHHHhcC
Q 004609 352 RVVVITGPNTGGKTASMKTLGLASL-MSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVS 430 (742)
Q Consensus 352 ~~~~ItGpNGsGKSTlLK~lGli~~-maq~G~~vPa~~~~~i~~~d~il~~ig~~~~~~~~lstfSgg~krl~~~~~l~~ 430 (742)
..+.|+||.|+||||+++.+.-... ......++....... .. ......+.. ............
T Consensus 20 ~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~-~~--~~~~~~~~~-------------~~~~~~~~~~~~ 83 (151)
T cd00009 20 KNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLE-GL--VVAELFGHF-------------LVRLLFELAEKA 83 (151)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhh-hh--HHHHHhhhh-------------hHhHHHHhhccC
Confidence 7899999999999999999922211 000011111111000 00 000000000 122333445567
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhc-----CCcEEEEEecChh
Q 004609 431 RESLVLIDEIGSGTDPSEGVALATSILQYLRD-----RVGLAVVTTHYAD 475 (742)
Q Consensus 431 ~~~LlLLDEp~~glDp~~~~aL~~all~~l~~-----~~~~vlitTH~~~ 475 (742)
++.++++||.-.. ++.....+.. ++..+.. .+..+|++|+...
T Consensus 84 ~~~~lilDe~~~~-~~~~~~~~~~-~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 84 KPGVLFIDEIDSL-SRGAQNALLR-VLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred CCeEEEEeChhhh-hHHHHHHHHH-HHHhcCceeccCCCeEEEEecCccc
Confidence 8899999998876 5555566666 4444432 4678888888754
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. |
| >PRK13830 conjugal transfer protein TrbE; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=3.3e-05 Score=94.30 Aligned_cols=63 Identities=21% Similarity=0.129 Sum_probs=47.8
Q ss_pred hcCCCcEEEEcCCCCCC-CHHHHHHHHHHHHHHHhcCCcEEEEEecChhhh----------hhcccccceecceE
Q 004609 428 LVSRESLVLIDEIGSGT-DPSEGVALATSILQYLRDRVGLAVVTTHYADLS----------CLKDKDTRFENAAT 491 (742)
Q Consensus 428 l~~~~~LlLLDEp~~gl-Dp~~~~aL~~all~~l~~~~~~vlitTH~~~l~----------~~a~~~~~i~~g~~ 491 (742)
+..+|.++++|||..++ ||.....+.. ++..+++.|++++++||+.+.. ..|+..+.+.++.+
T Consensus 649 l~~~p~illlDE~~~~L~d~~~~~~i~~-~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a 722 (818)
T PRK13830 649 LTGAPSLIILDEAWLMLGHPVFRDKIRE-WLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAA 722 (818)
T ss_pred cCCCCcEEEEECchhhcCCHHHHHHHHH-HHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCccc
Confidence 35799999999999999 6888777777 6666778899999999998633 24555555555543
|
|
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=97.83 E-value=8.2e-05 Score=84.96 Aligned_cols=93 Identities=20% Similarity=0.253 Sum_probs=53.6
Q ss_pred cccccccCCceEEEEEeCCCCCcchHHhhHHhhhhhh---hhceeecCCCCCCchHHHHHH---HHcCCccccccccccc
Q 004609 342 PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMS---KAGLYLPAKNHPRLPWFDLIL---ADIGDHQSLEQNLSTF 415 (742)
Q Consensus 342 ~i~l~l~~g~~~~~ItGpNGsGKSTlLK~lGli~~ma---q~G~~vPa~~~~~i~~~d~il---~~ig~~~~~~~~lstf 415 (742)
+.++.++.| .+++++||||+||||++..|+-...+. ....+++++. .+++.++++- ..+|..-.....
T Consensus 248 ~~~~~~~~g-~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt-~RigA~EQLr~~AeilGVpv~~~~~---- 321 (484)
T PRK06995 248 SEDALLDRG-GVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDS-YRIGGHEQLRIYGKILGVPVHAVKD---- 321 (484)
T ss_pred CccccccCC-cEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCc-cchhHHHHHHHHHHHhCCCeeccCC----
Confidence 345556677 899999999999999999994332221 1224667765 5677666552 222321110000
Q ss_pred hHHHHHHHHHHHhcCCCcEEEEcCCCCC
Q 004609 416 SGHISRIVDILELVSRESLVLIDEIGSG 443 (742)
Q Consensus 416 Sgg~krl~~~~~l~~~~~LlLLDEp~~g 443 (742)
. ..+...+.-+.+..++++|.+|.+
T Consensus 322 -~--~Dl~~aL~~L~d~d~VLIDTaGr~ 346 (484)
T PRK06995 322 -A--ADLRLALSELRNKHIVLIDTIGMS 346 (484)
T ss_pred -c--hhHHHHHHhccCCCeEEeCCCCcC
Confidence 0 122233344556678888887644
|
|
| >PRK09183 transposase/IS protein; Provisional | Back alignment and domain information |
|---|
Probab=97.82 E-value=3.4e-05 Score=81.71 Aligned_cols=110 Identities=21% Similarity=0.274 Sum_probs=63.0
Q ss_pred cccccccCCceEEEEEeCCCCCcchHHhhHHhhhhhhhhceeecCCCCCCchHHHHHHHHcCCccccccccccchHHHHH
Q 004609 342 PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISR 421 (742)
Q Consensus 342 ~i~l~l~~g~~~~~ItGpNGsGKSTlLK~lGli~~maq~G~~vPa~~~~~i~~~d~il~~ig~~~~~~~~lstfSgg~kr 421 (742)
.+++ +..| +.++|+||+|+|||+|...+|..... .|..+-. ++ ...++..+..... . . +
T Consensus 95 ~~~~-i~~~-~~v~l~Gp~GtGKThLa~al~~~a~~--~G~~v~~-----~~-~~~l~~~l~~a~~-~---~-------~ 153 (259)
T PRK09183 95 SLSF-IERN-ENIVLLGPSGVGKTHLAIALGYEAVR--AGIKVRF-----TT-AADLLLQLSTAQR-Q---G-------R 153 (259)
T ss_pred cCCc-hhcC-CeEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEE-----Ee-HHHHHHHHHHHHH-C---C-------c
Confidence 4455 7778 88999999999999999999654332 2321100 00 1112222110000 0 0 1
Q ss_pred HHHH-HHhcCCCcEEEEcCCCCC-CCHHHHHHHHHHHHHHHhcCCcEEEEEecCh
Q 004609 422 IVDI-LELVSRESLVLIDEIGSG-TDPSEGVALATSILQYLRDRVGLAVVTTHYA 474 (742)
Q Consensus 422 l~~~-~~l~~~~~LlLLDEp~~g-lDp~~~~aL~~all~~l~~~~~~vlitTH~~ 474 (742)
+..+ ......++++++||.+.. .+......|.. ++....+++ .+|+||+..
T Consensus 154 ~~~~~~~~~~~~dlLiiDdlg~~~~~~~~~~~lf~-li~~r~~~~-s~iiTsn~~ 206 (259)
T PRK09183 154 YKTTLQRGVMAPRLLIIDEIGYLPFSQEEANLFFQ-VIAKRYEKG-SMILTSNLP 206 (259)
T ss_pred HHHHHHHHhcCCCEEEEcccccCCCChHHHHHHHH-HHHHHHhcC-cEEEecCCC
Confidence 1111 122568899999999864 66655556666 665555544 578888874
|
|
| >cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases | Back alignment and domain information |
|---|
Probab=97.82 E-value=1.4e-05 Score=80.26 Aligned_cols=29 Identities=28% Similarity=0.455 Sum_probs=25.6
Q ss_pred cccccccCCceEEEEEeCCCCCcchHHhhH
Q 004609 342 PIDIKVECETRVVVITGPNTGGKTASMKTL 371 (742)
Q Consensus 342 ~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l 371 (742)
-+.+.+..| ..++|+|||||||||+++++
T Consensus 17 ~l~~~v~~g-~~i~I~G~tGSGKTTll~aL 45 (186)
T cd01130 17 YLWLAVEAR-KNILISGGTGSGKTTLLNAL 45 (186)
T ss_pred HHHHHHhCC-CEEEEECCCCCCHHHHHHHH
Confidence 355667788 89999999999999999999
|
The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase. |
| >cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2 | Back alignment and domain information |
|---|
Probab=97.82 E-value=1.1e-05 Score=81.41 Aligned_cols=90 Identities=16% Similarity=0.186 Sum_probs=55.8
Q ss_pred EEEEEeCCCCCcchHHhhH-HhhhhhhhhceeecCCCC----------------------CCchHHHHHHHHcCCccccc
Q 004609 353 VVVITGPNTGGKTASMKTL-GLASLMSKAGLYLPAKNH----------------------PRLPWFDLILADIGDHQSLE 409 (742)
Q Consensus 353 ~~~ItGpNGsGKSTlLK~l-Gli~~maq~G~~vPa~~~----------------------~~i~~~d~il~~ig~~~~~~ 409 (742)
+++|+||+||||||+.+++ +++. ......++.+.. ..+..+...+..+.....+.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~--~~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 78 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLG--NPKVVIISQDSYYKDLSHEELEERKNNNYDHPDAFDFDLLISHLQDLKNGKSVE 78 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC--CCCeEEEEecccccccccccHHHhccCCCCCCCcccHHHHHHHHHHHHCCCCEe
Confidence 4799999999999999999 4430 000111111110 01112334455555556667
Q ss_pred cccccchHHHHHHHHHHHhcCCCcEEEEcCCCCCCCH
Q 004609 410 QNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDP 446 (742)
Q Consensus 410 ~~lstfSgg~krl~~~~~l~~~~~LlLLDEp~~glDp 446 (742)
.+.-.+|.|+.....+ .+.++.++|+|.|+.+.++
T Consensus 79 ~p~~d~~~~~~~~~~~--~i~~~~~vI~eg~~~~~~~ 113 (198)
T cd02023 79 IPVYDFKTHSRLKETV--TVYPADVIILEGILALYDK 113 (198)
T ss_pred ccccccccCcccCCce--ecCCCCEEEEechhhccch
Confidence 7777778777521111 4678899999999999987
|
7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine. |
| >TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00021 Score=73.81 Aligned_cols=127 Identities=17% Similarity=0.154 Sum_probs=69.2
Q ss_pred cccCCceEEEEEeCCCCCcchHHhhHHhhhh-hhhhceeecCCCCCCchHHHHHHHHcCCc-------------ccc---
Q 004609 346 KVECETRVVVITGPNTGGKTASMKTLGLASL-MSKAGLYLPAKNHPRLPWFDLILADIGDH-------------QSL--- 408 (742)
Q Consensus 346 ~l~~g~~~~~ItGpNGsGKSTlLK~lGli~~-maq~G~~vPa~~~~~i~~~d~il~~ig~~-------------~~~--- 408 (742)
-+++| ++++|.||+|+|||||...+....+ -...++|+..... ...+-.....+|.. +.+
T Consensus 16 Gi~~G-~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e~~--~~~i~~~~~~~g~~~~~~~~~~~l~i~d~~~~~ 92 (229)
T TIGR03881 16 GIPRG-FFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTEES--RESIIRQAAQFGMDFEKAIEEGKLVIIDALMKE 92 (229)
T ss_pred CCcCC-eEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEccCC--HHHHHHHHHHhCCCHHHHhhcCCEEEEEccccc
Confidence 35678 9999999999999999987732211 1223445543321 11111112222211 000
Q ss_pred ---ccccccchHHHH--HHHHHHHhc-CCCcEEEEcCCCCCC--CHHHHHHHHHHHHHHHhcCCcEEEEEecChh
Q 004609 409 ---EQNLSTFSGHIS--RIVDILELV-SRESLVLIDEIGSGT--DPSEGVALATSILQYLRDRVGLAVVTTHYAD 475 (742)
Q Consensus 409 ---~~~lstfSgg~k--rl~~~~~l~-~~~~LlLLDEp~~gl--Dp~~~~aL~~all~~l~~~~~~vlitTH~~~ 475 (742)
...+..++-.+. ++..+.... .++.++++|-|+.-+ +|.....+...+...+++.++|+|+++|...
T Consensus 93 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~vvIDsl~~l~~~~~~~~r~~~~~l~~~l~~~~~tvil~~~~~~ 167 (229)
T TIGR03881 93 KEDEWSLRELSIEELLNKVIEAKKYLGYGHARLVIDSMSAFWLDKPAMARKYSYYLKRVLNRWNFTILLTSQYAI 167 (229)
T ss_pred cccccccccCCHHHHHHHHHHHHHhhccCceEEEecCchhhhccChHHHHHHHHHHHHHHHhCCCEEEEEecccc
Confidence 001123344332 333333322 257788888887642 4444445555577777888999999999643
|
Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain. |
| >TIGR01420 pilT_fam pilus retraction protein PilT | Back alignment and domain information |
|---|
Probab=97.78 E-value=2.5e-05 Score=86.05 Aligned_cols=113 Identities=16% Similarity=0.165 Sum_probs=57.6
Q ss_pred CCceEEEEEeCCCCCcchHHhhH-HhhhhhhhhceeecCCCCCCchHHHHHHHHcCCccccccccccchHHHHHHHHHHH
Q 004609 349 CETRVVVITGPNTGGKTASMKTL-GLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILE 427 (742)
Q Consensus 349 ~g~~~~~ItGpNGsGKSTlLK~l-Gli~~maq~G~~vPa~~~~~i~~~d~il~~ig~~~~~~~~lstfSgg~krl~~~~~ 427 (742)
++ ..++|+||+||||||+|+.+ +.+... ..+-.+-.+....+. +......+. ...+....-+|. -.+..+
T Consensus 121 ~~-g~ili~G~tGSGKTT~l~al~~~i~~~-~~~~i~tiEdp~E~~-~~~~~~~i~-q~evg~~~~~~~-----~~l~~~ 191 (343)
T TIGR01420 121 PR-GLILVTGPTGSGKSTTLASMIDYINKN-AAGHIITIEDPIEYV-HRNKRSLIN-QREVGLDTLSFA-----NALRAA 191 (343)
T ss_pred cC-cEEEEECCCCCCHHHHHHHHHHhhCcC-CCCEEEEEcCChhhh-ccCccceEE-ccccCCCCcCHH-----HHHHHh
Confidence 44 68999999999999999988 211100 011111111111110 000000000 000111111221 122345
Q ss_pred hcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChhhhh
Q 004609 428 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSC 478 (742)
Q Consensus 428 l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~l~~ 478 (742)
+-.+|+++++||+. |+........ ....|..++.|+|-.....
T Consensus 192 lr~~pd~i~vgEir---d~~~~~~~l~-----aa~tGh~v~~T~Ha~~~~~ 234 (343)
T TIGR01420 192 LREDPDVILIGEMR---DLETVELALT-----AAETGHLVFGTLHTNSAAQ 234 (343)
T ss_pred hccCCCEEEEeCCC---CHHHHHHHHH-----HHHcCCcEEEEEcCCCHHH
Confidence 66899999999996 7766554333 2345888999999865443
|
This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation. |
| >PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00021 Score=80.46 Aligned_cols=90 Identities=19% Similarity=0.268 Sum_probs=55.0
Q ss_pred cCCceEEEEEeCCCCCcchHHhhHHhhhhh---hhhceeecCCCCCCchHHHHHHH---HcCCccccccccccchHHHHH
Q 004609 348 ECETRVVVITGPNTGGKTASMKTLGLASLM---SKAGLYLPAKNHPRLPWFDLILA---DIGDHQSLEQNLSTFSGHISR 421 (742)
Q Consensus 348 ~~g~~~~~ItGpNGsGKSTlLK~lGli~~m---aq~G~~vPa~~~~~i~~~d~il~---~ig~~~~~~~~lstfSgg~kr 421 (742)
..| ++++++||||+||||+++.|+-...+ ...+.++..+. .++++++++.. .+|..-. +..... .
T Consensus 189 ~~g-~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~-~rigalEQL~~~a~ilGvp~~------~v~~~~-d 259 (420)
T PRK14721 189 EQG-GVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDS-YRIGGHEQLRIYGKLLGVSVR------SIKDIA-D 259 (420)
T ss_pred CCC-cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCC-cchhHHHHHHHHHHHcCCcee------cCCCHH-H
Confidence 467 89999999999999999988433222 12344566664 67888876532 2232211 111111 2
Q ss_pred HHHHHHhcCCCcEEEEcCCCCCCCHHH
Q 004609 422 IVDILELVSRESLVLIDEIGSGTDPSE 448 (742)
Q Consensus 422 l~~~~~l~~~~~LlLLDEp~~glDp~~ 448 (742)
+..++..+.+.+++|+|.+ |..+..
T Consensus 260 l~~al~~l~~~d~VLIDTa--Grsqrd 284 (420)
T PRK14721 260 LQLMLHELRGKHMVLIDTV--GMSQRD 284 (420)
T ss_pred HHHHHHHhcCCCEEEecCC--CCCcch
Confidence 3344455678899999975 555544
|
|
| >COG4637 Predicted ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00024 Score=75.68 Aligned_cols=65 Identities=25% Similarity=0.253 Sum_probs=49.4
Q ss_pred cchHHHHH-HHHHHHhc--CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhc
Q 004609 414 TFSGHISR-IVDILELV--SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLK 480 (742)
Q Consensus 414 tfSgg~kr-l~~~~~l~--~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~l~~~a 480 (742)
.||-|..| ++++.++. ..|.+++||||-++|-|.---+|+. +....++. .-||++||...+....
T Consensus 270 eLSDGTlRfl~l~t~Llsp~~p~ll~ldEPE~sLHP~lL~~La~-~~~sAak~-sQv~VsTHS~rLl~~~ 337 (373)
T COG4637 270 ELSDGTLRFLALATLLLSPRPPPLLLLDEPETSLHPDLLPALAE-LMRSAAKR-SQVIVSTHSPRLLNAV 337 (373)
T ss_pred hccccHHHHHHHHHHHcCCCCCceeEecCcccccCHhHHHHHHH-HHHHhhcc-ceEEEEeCCHHHHhhc
Confidence 78988665 66665554 4678999999999999999999988 44444443 3799999998866543
|
|
| >PRK00064 recF recombination protein F; Reviewed | Back alignment and domain information |
|---|
Probab=97.72 E-value=5.9e-05 Score=83.75 Aligned_cols=79 Identities=19% Similarity=0.133 Sum_probs=57.0
Q ss_pred ccccccchHHHH-HHHHHHHhc---------CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh-hh
Q 004609 409 EQNLSTFSGHIS-RIVDILELV---------SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LS 477 (742)
Q Consensus 409 ~~~lstfSgg~k-rl~~~~~l~---------~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~-l~ 477 (742)
......+|.||+ ++.+++.++ .+|+++|||||+++||+.....|...+.+ .++.+++|||+.+ +.
T Consensus 268 ~~~~~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~----~~~qv~it~~~~~~~~ 343 (361)
T PRK00064 268 LPAADFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKG----LGAQVFITTTDLEDLA 343 (361)
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhc----cCCEEEEEcCChhhhh
Confidence 355678999999 677777664 78999999999999999999888773322 2467899999865 33
Q ss_pred hhc--ccccceecceE
Q 004609 478 CLK--DKDTRFENAAT 491 (742)
Q Consensus 478 ~~a--~~~~~i~~g~~ 491 (742)
.++ ...+.+.+|.+
T Consensus 344 ~~~~~~~i~~v~~G~i 359 (361)
T PRK00064 344 DLLENAKIFHVEQGKI 359 (361)
T ss_pred hhhccCcEEEEeCCEE
Confidence 332 23455666554
|
|
| >TIGR02903 spore_lon_C ATP-dependent protease, Lon family | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00044 Score=81.97 Aligned_cols=34 Identities=24% Similarity=0.300 Sum_probs=25.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecC
Q 004609 433 SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHY 473 (742)
Q Consensus 433 ~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~ 473 (742)
.+|+||| +..||+.....|.. +++. ..+.++++|
T Consensus 267 GvL~LDE-i~~Ld~~~Q~~Ll~-~Le~-----~~v~~~~~~ 300 (615)
T TIGR02903 267 GVLFIDE-IGELDPLLQNKLLK-VLED-----KRVEFSSSY 300 (615)
T ss_pred CeEEEec-cccCCHHHHHHHHH-HHhh-----CeEEeecce
Confidence 4999999 78999998888777 3332 456666664
|
Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC. |
| >TIGR01026 fliI_yscN ATPase FliI/YscN family | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00054 Score=77.77 Aligned_cols=145 Identities=17% Similarity=0.081 Sum_probs=85.9
Q ss_pred eecccccccCCceEEEEEeCCCCCcchHHhhHHhhhhhhhhceeecCCCC-----CCchHHHHHH-HHcCCc---cc-cc
Q 004609 340 PVPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNH-----PRLPWFDLIL-ADIGDH---QS-LE 409 (742)
Q Consensus 340 ~v~i~l~l~~g~~~~~ItGpNGsGKSTlLK~lGli~~maq~G~~vPa~~~-----~~i~~~d~il-~~ig~~---~~-~~ 409 (742)
.++.-+.+.+| +.++|+||||+||||||++| ++...|..+- .+-.-+..+. ..++-+ .. +-
T Consensus 153 ~iD~l~~i~~G-q~~~I~G~sG~GKStLl~~I--------~~~~~~~~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv 223 (440)
T TIGR01026 153 SIDGLLTVGKG-QRIGIFAGSGVGKSTLLGMI--------ARNTEADVNVIALIGERGREVREFIEHDLGEEGLKRSVVV 223 (440)
T ss_pred eeeeccccCCC-cEEEEECCCCCCHHHHHHHH--------hCCCCCCEEEEEEEeecchHHHHHHHHHhcccccceEEEE
Confidence 45555999999 89999999999999999999 3322221110 0001111111 122211 11 11
Q ss_pred cccccchHHHH-HHHHH-HH------hcCCCcEEEEc-----------------CC--CCCCCHHHHHHHHHHHHHHHhc
Q 004609 410 QNLSTFSGHIS-RIVDI-LE------LVSRESLVLID-----------------EI--GSGTDPSEGVALATSILQYLRD 462 (742)
Q Consensus 410 ~~lstfSgg~k-rl~~~-~~------l~~~~~LlLLD-----------------Ep--~~glDp~~~~aL~~all~~l~~ 462 (742)
-..+.=|-.++ +...+ .+ -....-||++| || +.|.||.....+.. +++....
T Consensus 224 ~~~~d~~p~~r~~~~~~a~t~AE~frd~G~~Vll~~DslTr~A~A~REisl~~ge~P~~~Gypp~~~~~l~~-l~ERag~ 302 (440)
T TIGR01026 224 VATSDQSPLLRLKGAYVATAIAEYFRDQGKDVLLLMDSVTRFAMAQREIGLAAGEPPATKGYTPSVFSTLPR-LLERAGA 302 (440)
T ss_pred EECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEeChHHHHHHHHHHHHhcCCCCcccccChhHHHHHHH-HHHHhcc
Confidence 11222233444 32222 11 12344567777 43 45999998888887 7777766
Q ss_pred CCc-------EEEEEecChhhhhhcccccceecceEEEec
Q 004609 463 RVG-------LAVVTTHYADLSCLKDKDTRFENAATEFSL 495 (742)
Q Consensus 463 ~~~-------~vlitTH~~~l~~~a~~~~~i~~g~~~~~~ 495 (742)
.+. ||++.+||+ ...+++....+.+|++.++.
T Consensus 303 ~~~GSIT~i~tVl~~~~d~-~dpi~d~~~~i~dG~ivLsr 341 (440)
T TIGR01026 303 SGKGSITAFYTVLVEGDDM-NEPIADSVRGILDGHIVLSR 341 (440)
T ss_pred CCCCeeeEEEEEEccCcCC-CcchhhhhccccceEEEEec
Confidence 555 788889986 34477888889999998763
|
This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins. |
| >cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis | Back alignment and domain information |
|---|
Probab=97.65 E-value=3.1e-05 Score=70.85 Aligned_cols=29 Identities=31% Similarity=0.231 Sum_probs=27.7
Q ss_pred cccccccCCceEEEEEeCCCCCcchHHhhH
Q 004609 342 PIDIKVECETRVVVITGPNTGGKTASMKTL 371 (742)
Q Consensus 342 ~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l 371 (742)
+++|.+.+| ++++|+||+|||||||++++
T Consensus 7 ~vsl~i~~g-e~v~I~GpSGsGKSTLl~~l 35 (107)
T cd00820 7 GVLVDVYGK-VGVLITGDSGIGKTELALEL 35 (107)
T ss_pred eeEEEEcCC-EEEEEEcCCCCCHHHHHHHh
Confidence 788999999 99999999999999999998
|
It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural |
| >TIGR00767 rho transcription termination factor Rho | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0018 Score=72.19 Aligned_cols=46 Identities=13% Similarity=0.165 Sum_probs=38.0
Q ss_pred CcEEEeeeeeecCCc--------------eecccccccCCceEEEEEeCCCCCcchHHhhH
Q 004609 325 SEMTVGSLSKGISDF--------------PVPIDIKVECETRVVVITGPNTGGKTASMKTL 371 (742)
Q Consensus 325 ~~l~~~nl~~~y~~~--------------~v~i~l~l~~g~~~~~ItGpNGsGKSTlLK~l 371 (742)
+.+.++||++.|.+. .+++.+.+.+| +.++|+||.|+||||+++.+
T Consensus 129 ~ri~Fe~LTf~YP~er~~Le~~~~~~~~R~id~~~pig~G-q~~~IvG~~g~GKTtL~~~i 188 (415)
T TIGR00767 129 NRVLFENLTPLYPNERLRLETSTEDLSTRVLDLFAPIGKG-QRGLIVAPPKAGKTVLLQKI 188 (415)
T ss_pred CCeEEEEeeecCCCccceeecCccccceeeeeeEEEeCCC-CEEEEECCCCCChhHHHHHH
Confidence 467788888888532 12777888999 89999999999999999998
|
Members of this family differ in the specificity of RNA binding. |
| >TIGR02655 circ_KaiC circadian clock protein KaiC | Back alignment and domain information |
|---|
Probab=97.59 E-value=4.7e-05 Score=87.74 Aligned_cols=124 Identities=15% Similarity=0.133 Sum_probs=68.3
Q ss_pred ccCCceEEEEEeCCCCCcchHHhhHHhhhhh--hhhceeecCCCCCCchHHHHHHHHcCCcc--cc--------cc----
Q 004609 347 VECETRVVVITGPNTGGKTASMKTLGLASLM--SKAGLYLPAKNHPRLPWFDLILADIGDHQ--SL--------EQ---- 410 (742)
Q Consensus 347 l~~g~~~~~ItGpNGsGKSTlLK~lGli~~m--aq~G~~vPa~~~~~i~~~d~il~~ig~~~--~~--------~~---- 410 (742)
+++| ..++|+||+|+|||||.-.+...-+. ...|+|+-.+. ..-. +-+-+..+|..- .. +.
T Consensus 18 lp~g-~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE-~~~~-l~~~~~~~G~~~~~~~~~g~l~~~~~~~~~ 94 (484)
T TIGR02655 18 LPIG-RSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEE-SPQD-IIKNARSFGWDLQKLVDEGKLFILDASPDP 94 (484)
T ss_pred CCCC-eEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEec-CHHH-HHHHHHHcCCCHHHHhhcCceEEEecCchh
Confidence 5678 89999999999999999887222221 34566776543 1111 222233333210 00 00
Q ss_pred ----ccccchHHH--HHHHHHHHhcCCCcEEEEc---CCCCCCCH--HHHHHHHHHHHHHHhcCCcEEEEEecChh
Q 004609 411 ----NLSTFSGHI--SRIVDILELVSRESLVLID---EIGSGTDP--SEGVALATSILQYLRDRVGLAVVTTHYAD 475 (742)
Q Consensus 411 ----~lstfSgg~--krl~~~~~l~~~~~LlLLD---Ep~~glDp--~~~~aL~~all~~l~~~~~~vlitTH~~~ 475 (742)
.+..+.-.. .++.... --.++..|++| .+....|. ..+..+.. ++..+++.|+|+|+|||+.+
T Consensus 95 ~~~~~~~~~~l~~~l~~i~~~l-s~g~~qRVvIDSl~aL~~~~~~~~~~r~~l~~-Li~~L~~~g~TvLLtsh~~~ 168 (484)
T TIGR02655 95 EGQDVVGGFDLSALIERINYAI-RKYKAKRVSIDSVTAVFQQYDAVSVVRREIFR-LVARLKQIGVTTVMTTERIE 168 (484)
T ss_pred ccccccccCCHHHHHHHHHHHH-HHhCCcEEEEeehhHhhhhcCchHHHHHHHHH-HHHHHHHCCCEEEEEecCcc
Confidence 011122111 1222111 12467788888 33344444 34455554 77888888999999999864
|
Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. |
| >cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00021 Score=73.92 Aligned_cols=127 Identities=18% Similarity=0.221 Sum_probs=67.3
Q ss_pred ccCCceEEEEEeCCCCCcchHHhhHHhhhhhh-------hhceeecCCCCCCchHHHHHHHHcCCc-ccccccc---ccc
Q 004609 347 VECETRVVVITGPNTGGKTASMKTLGLASLMS-------KAGLYLPAKNHPRLPWFDLILADIGDH-QSLEQNL---STF 415 (742)
Q Consensus 347 l~~g~~~~~ItGpNGsGKSTlLK~lGli~~ma-------q~G~~vPa~~~~~i~~~d~il~~ig~~-~~~~~~l---stf 415 (742)
++.| +++.|+||+|+||||++..+.....+. ....|+-.++......+.+++..++.. +.+..++ .-+
T Consensus 16 i~~g-~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 94 (235)
T cd01123 16 IETG-SITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFGLDPEEVLDNIYVARAY 94 (235)
T ss_pred CCCC-eEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHHhccChHhHhcCEEEEecC
Confidence 4578 999999999999999999995443332 233455444422333444454444321 1111111 112
Q ss_pred hHHH-----HHHHHHHHhcCCCcEEEEcCCCCCC-----C---HHHHHH----HHHHHHHHHhcCCcEEEEEecCh
Q 004609 416 SGHI-----SRIVDILELVSRESLVLIDEIGSGT-----D---PSEGVA----LATSILQYLRDRVGLAVVTTHYA 474 (742)
Q Consensus 416 Sgg~-----krl~~~~~l~~~~~LlLLDEp~~gl-----D---p~~~~a----L~~all~~l~~~~~~vlitTH~~ 474 (742)
+..+ .++........++.+|++|-.++-. + ...+.. ++..+.....+.+++||+|+|-.
T Consensus 95 ~~~~l~~~l~~l~~~l~~~~~~~liVIDSis~~~~~~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~avl~tn~~~ 170 (235)
T cd01123 95 NSDHQLQLLEELEAILIESSRIKLVIVDSVTALFRAEFDGRGELAERQQHLAKLLRTLKRLADEFNVAVVITNQVT 170 (235)
T ss_pred CHHHHHHHHHHHHHHHhhcCCeeEEEEeCcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEeccEe
Confidence 2221 1222222222378999999998631 1 123322 33323333346688888888764
|
This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 . |
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00037 Score=88.52 Aligned_cols=28 Identities=32% Similarity=0.380 Sum_probs=23.9
Q ss_pred ccccccCCceEEEEEeCCCCCcchHHhhH
Q 004609 343 IDIKVECETRVVVITGPNTGGKTASMKTL 371 (742)
Q Consensus 343 i~l~l~~g~~~~~ItGpNGsGKSTlLK~l 371 (742)
+++....+ ++++|+||+|.||||+++.+
T Consensus 200 L~l~~~~~-~vvgI~G~gGiGKTTLA~~l 227 (1153)
T PLN03210 200 LHLESEEV-RMVGIWGSSGIGKTTIARAL 227 (1153)
T ss_pred HccccCce-EEEEEEcCCCCchHHHHHHH
Confidence 34455566 89999999999999999999
|
syringae 6; Provisional |
| >TIGR00152 dephospho-CoA kinase | Back alignment and domain information |
|---|
Probab=97.54 E-value=8.4e-05 Score=74.65 Aligned_cols=108 Identities=11% Similarity=0.097 Sum_probs=71.7
Q ss_pred EEEEEeCCCCCcchHHhhHHhhhhhhhhc-eeecCCCC-------CCchHHHHHHHHcCCccccccccccchHHHHHHHH
Q 004609 353 VVVITGPNTGGKTASMKTLGLASLMSKAG-LYLPAKNH-------PRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVD 424 (742)
Q Consensus 353 ~~~ItGpNGsGKSTlLK~lGli~~maq~G-~~vPa~~~-------~~i~~~d~il~~ig~~~~~~~~lstfSgg~krl~~ 424 (742)
+++|||+-||||||+.+.+.- .| +.+-.... ..-+.+..+...+|.. .+. -.|...|..+
T Consensus 1 ~i~itG~~gsGKst~~~~l~~------~~~~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~-i~~-----~~g~idr~~L 68 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLAD------KYHFPVIDADKIAHQVVEKGSPAYEKIVDHFGAQ-ILN-----EDGELDRKAL 68 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHH------hcCCeEEeCCHHHHHHHhcCChHHHHHHHHHCHH-HhC-----CCCCCCHHHH
Confidence 479999999999999998821 22 33322210 1113455666666621 111 1244448888
Q ss_pred HHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh
Q 004609 425 ILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD 475 (742)
Q Consensus 425 ~~~l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~ 475 (742)
+..+..+|..+..+| +.++|.-...+...+ ..+...+.++|+.+|.+.
T Consensus 69 ~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i-~~~~~~~~~vvi~~pll~ 116 (188)
T TIGR00152 69 GERVFNDPEELKWLN--NLLHPLIREWMKKLL-AQFQSKLAYVLLDVPLLF 116 (188)
T ss_pred HHHHhCCHHHHHHHH--HhhCHHHHHHHHHHH-HHhhcCCCEEEEEchHhh
Confidence 888889999877776 889999999888744 444444578999999864
|
This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases. |
| >TIGR00416 sms DNA repair protein RadA | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00056 Score=78.19 Aligned_cols=122 Identities=14% Similarity=0.110 Sum_probs=67.4
Q ss_pred ccCCceEEEEEeCCCCCcchHHhhHHh-hhhhhhhceeecCCCCCCchHHHHHHHHcCCccccccccccchHHHHHHHHH
Q 004609 347 VECETRVVVITGPNTGGKTASMKTLGL-ASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDI 425 (742)
Q Consensus 347 l~~g~~~~~ItGpNGsGKSTlLK~lGl-i~~maq~G~~vPa~~~~~i~~~d~il~~ig~~~~~~~~lstfSgg~krl~~~ 425 (742)
+.+| .+++|.|++|+|||||+.++.. +.......+|+-.+. ...-+..-..++|....--.-+...+- ..+...
T Consensus 91 i~~G-svilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EE--s~~qi~~ra~rlg~~~~~l~~~~e~~~--~~I~~~ 165 (454)
T TIGR00416 91 IVPG-SLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEE--SLQQIKMRAIRLGLPEPNLYVLSETNW--EQICAN 165 (454)
T ss_pred ccCC-eEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcC--CHHHHHHHHHHcCCChHHeEEcCCCCH--HHHHHH
Confidence 5677 8999999999999999999832 211112234554332 222222223345532110011111111 122221
Q ss_pred HHhcCCCcEEEEcCCCCCCC---------HHHHHHHHHHHHHHHhcCCcEEEEEecCh
Q 004609 426 LELVSRESLVLIDEIGSGTD---------PSEGVALATSILQYLRDRVGLAVVTTHYA 474 (742)
Q Consensus 426 ~~l~~~~~LlLLDEp~~glD---------p~~~~aL~~all~~l~~~~~~vlitTH~~ 474 (742)
. ...+|++|++|-...=.. +.....+...+.++.++.|.|+|+++|..
T Consensus 166 i-~~~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~~giTvllt~hvt 222 (454)
T TIGR00416 166 I-EEENPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKTRGIAIFIVGHVT 222 (454)
T ss_pred H-HhcCCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHHhCCEEEEEeccc
Confidence 1 235799999998865321 22233444447777788899999999964
|
The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)). |
| >cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00093 Score=68.69 Aligned_cols=127 Identities=16% Similarity=0.198 Sum_probs=68.5
Q ss_pred ccCCceEEEEEeCCCCCcchHHhhHHhhhhhh-------hhceeecCCCCCCchHHHHHHHHcCCcc-cccccc---ccc
Q 004609 347 VECETRVVVITGPNTGGKTASMKTLGLASLMS-------KAGLYLPAKNHPRLPWFDLILADIGDHQ-SLEQNL---STF 415 (742)
Q Consensus 347 l~~g~~~~~ItGpNGsGKSTlLK~lGli~~ma-------q~G~~vPa~~~~~i~~~d~il~~ig~~~-~~~~~l---stf 415 (742)
++.| +++.|+||+|+||||++..+....... ...+|+-.++......+.++...++... .+..++ ..+
T Consensus 16 ~~~g-~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 94 (226)
T cd01393 16 IPTG-RITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQLAVRFGLDPEEVLDNIYVARPY 94 (226)
T ss_pred CcCC-cEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHHHHHHHhccchhhhhccEEEEeCC
Confidence 5577 899999999999999999984443322 2224555444323334445554443221 111111 112
Q ss_pred hHHHH-H-HHHHHH--hcCCCcEEEEcCCCCCCC--------HHHHHH----HHHHHHHHHhcCCcEEEEEecCh
Q 004609 416 SGHIS-R-IVDILE--LVSRESLVLIDEIGSGTD--------PSEGVA----LATSILQYLRDRVGLAVVTTHYA 474 (742)
Q Consensus 416 Sgg~k-r-l~~~~~--l~~~~~LlLLDEp~~glD--------p~~~~a----L~~all~~l~~~~~~vlitTH~~ 474 (742)
+..+. . +..+.. ...++++|++|=.++-.. ..++.. ++..+.....+.++++|+++|-.
T Consensus 95 ~~~~~~~~l~~~~~~~~~~~~~lvVIDsis~l~~~~~~~~~~~~~~~~~l~~~~~~L~~~a~~~~~~vi~tnq~~ 169 (226)
T cd01393 95 NGEQQLEIVEELERIMSSGRVDLVVVDSVAALFRKEFIGRGMLAERARLLSQALRKLLRLADKFNVAVVFTNQVR 169 (226)
T ss_pred CHHHHHHHHHHHHHHhhcCCeeEEEEcCcchhhhhhhcCCchHHHHHHHHHHHHHHHHHHHHHhCcEEEEEEEEe
Confidence 33322 1 222211 135788999999875321 122222 33334444456788999998864
|
RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB. |
| >TIGR00611 recf recF protein | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00012 Score=81.44 Aligned_cols=59 Identities=20% Similarity=0.119 Sum_probs=49.1
Q ss_pred ccchHHHH-HHHHHHHhcC---------CCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChh
Q 004609 413 STFSGHIS-RIVDILELVS---------RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD 475 (742)
Q Consensus 413 stfSgg~k-rl~~~~~l~~---------~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~ 475 (742)
..+|.||+ .+.+++.++. .|+++|||||+++||+..+..|...+.. .|..+++|||+.+
T Consensus 274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~----~~~qv~it~~~~~ 342 (365)
T TIGR00611 274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQS----LGVQVFVTAISLD 342 (365)
T ss_pred HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhh----cCCEEEEEecChh
Confidence 46799999 6777788877 8999999999999999999988874333 2678999999875
|
All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0004 Score=73.26 Aligned_cols=124 Identities=14% Similarity=0.196 Sum_probs=61.4
Q ss_pred cccccccCCceEEEEEeCCCCCcchHHhhHH-hhhhhhhhcee----ecCCCCCCchHHHHHHHHcCCccccccccccch
Q 004609 342 PIDIKVECETRVVVITGPNTGGKTASMKTLG-LASLMSKAGLY----LPAKNHPRLPWFDLILADIGDHQSLEQNLSTFS 416 (742)
Q Consensus 342 ~i~l~l~~g~~~~~ItGpNGsGKSTlLK~lG-li~~maq~G~~----vPa~~~~~i~~~d~il~~ig~~~~~~~~lstfS 416 (742)
.++..+..+..+++|+||||+||||+++.+. .+. ..... .+... ....++..+...+|....- .. .
T Consensus 34 ~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l~---~~~~~~~~~~~~~~-~~~~~l~~i~~~lG~~~~~-~~----~ 104 (269)
T TIGR03015 34 YLEYGLSQREGFILITGEVGAGKTTLIRNLLKRLD---QERVVAAKLVNTRV-DAEDLLRMVAADFGLETEG-RD----K 104 (269)
T ss_pred HHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHhcC---CCCeEEeeeeCCCC-CHHHHHHHHHHHcCCCCCC-CC----H
Confidence 3444455553589999999999999999882 111 00111 11111 1123344566666654211 10 0
Q ss_pred HHHH-HHH---HHHHhcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCc-EEEEEecChhh
Q 004609 417 GHIS-RIV---DILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVG-LAVVTTHYADL 476 (742)
Q Consensus 417 gg~k-rl~---~~~~l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~-~vlitTH~~~l 476 (742)
.... ++. .......++-+|++|| .-.+++.....+.. +.+.....+. ..|+.|...++
T Consensus 105 ~~~~~~l~~~l~~~~~~~~~~vliiDe-~~~l~~~~~~~l~~-l~~~~~~~~~~~~vvl~g~~~~ 167 (269)
T TIGR03015 105 AALLRELEDFLIEQFAAGKRALLVVDE-AQNLTPELLEELRM-LSNFQTDNAKLLQIFLVGQPEF 167 (269)
T ss_pred HHHHHHHHHHHHHHHhCCCCeEEEEEC-cccCCHHHHHHHHH-HhCcccCCCCeEEEEEcCCHHH
Confidence 1111 222 1223356677999999 44577765554433 3333222222 23455555444
|
Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems. |
| >PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0026 Score=67.88 Aligned_cols=97 Identities=15% Similarity=0.196 Sum_probs=55.7
Q ss_pred CCceEEEEEeCCCCCcchHHhhHHhh-hhhhhhceeecCCCCCCchHHHHHHHH---cCCccccccccccchHHHHHHHH
Q 004609 349 CETRVVVITGPNTGGKTASMKTLGLA-SLMSKAGLYLPAKNHPRLPWFDLILAD---IGDHQSLEQNLSTFSGHISRIVD 424 (742)
Q Consensus 349 ~g~~~~~ItGpNGsGKSTlLK~lGli-~~maq~G~~vPa~~~~~i~~~d~il~~---ig~~~~~~~~lstfSgg~krl~~ 424 (742)
++ +.++++||||+||||+++.++.. .-......++-.++ .+++.+.++-.. ++..-.. ..+. ..+..
T Consensus 74 ~~-~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~-~ri~~~~ql~~~~~~~~~~~~~-----~~~~--~~l~~ 144 (270)
T PRK06731 74 EV-QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDH-SRIGTVQQLQDYVKTIGFEVIA-----VRDE--AAMTR 144 (270)
T ss_pred CC-CEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCC-CCHHHHHHHHHHhhhcCceEEe-----cCCH--HHHHH
Confidence 56 89999999999999999998332 21122334555554 456666665432 2221111 1111 12222
Q ss_pred HH---HhcCCCcEEEEcCCCCC-CCHHHHHHHHH
Q 004609 425 IL---ELVSRESLVLIDEIGSG-TDPSEGVALAT 454 (742)
Q Consensus 425 ~~---~l~~~~~LlLLDEp~~g-lDp~~~~aL~~ 454 (742)
++ ....+.+++|+|-||+. .|...-..+..
T Consensus 145 ~l~~l~~~~~~D~ViIDt~Gr~~~~~~~l~el~~ 178 (270)
T PRK06731 145 ALTYFKEEARVDYILIDTAGKNYRASETVEEMIE 178 (270)
T ss_pred HHHHHHhcCCCCEEEEECCCCCcCCHHHHHHHHH
Confidence 22 12246799999999987 45555555554
|
|
| >cd01121 Sms Sms (bacterial radA) DNA repair protein | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00092 Score=74.48 Aligned_cols=121 Identities=17% Similarity=0.191 Sum_probs=67.3
Q ss_pred ccCCceEEEEEeCCCCCcchHHhhHHhhhhh-hhhceeecCCCCCCchHHHHHHHHcCCcc-ccccccccchHHHHHHHH
Q 004609 347 VECETRVVVITGPNTGGKTASMKTLGLASLM-SKAGLYLPAKNHPRLPWFDLILADIGDHQ-SLEQNLSTFSGHISRIVD 424 (742)
Q Consensus 347 l~~g~~~~~ItGpNGsGKSTlLK~lGli~~m-aq~G~~vPa~~~~~i~~~d~il~~ig~~~-~~~~~lstfSgg~krl~~ 424 (742)
+.+| .++.|.||+|+|||||+..++..... ....+|+..+. ....+..-..++|... .+. -..... ...+..
T Consensus 79 i~~G-slvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EE--s~~qi~~Ra~rlg~~~~~l~-l~~e~~--le~I~~ 152 (372)
T cd01121 79 LVPG-SVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEE--SPEQIKLRADRLGISTENLY-LLAETN--LEDILA 152 (372)
T ss_pred ccCC-eEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCc--CHHHHHHHHHHcCCCcccEE-EEccCc--HHHHHH
Confidence 5567 89999999999999999998322111 12334554433 2222222344566432 111 011111 112211
Q ss_pred HHHhcCCCcEEEEcCCCCC----CC-----HHHHHHHHHHHHHHHhcCCcEEEEEecCh
Q 004609 425 ILELVSRESLVLIDEIGSG----TD-----PSEGVALATSILQYLRDRVGLAVVTTHYA 474 (742)
Q Consensus 425 ~~~l~~~~~LlLLDEp~~g----lD-----p~~~~aL~~all~~l~~~~~~vlitTH~~ 474 (742)
.. ...+|++|++|+..+- +| +..-..++..+.+..++.+.++|++.|-.
T Consensus 153 ~i-~~~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~lak~~~itvilvghvt 210 (372)
T cd01121 153 SI-EELKPDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAKERNIPIFIVGHVT 210 (372)
T ss_pred HH-HhcCCcEEEEcchHHhhccccccCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeecc
Confidence 11 2358999999997432 22 22223344557777778889999998853
|
This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules. |
| >PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00096 Score=79.83 Aligned_cols=103 Identities=19% Similarity=0.209 Sum_probs=60.8
Q ss_pred cccccccCCceEEEEEeCCCCCcchHHhhHH-hhhhhh--hhceeecCCCCCCchHHHHHH---HHcCCccccccccccc
Q 004609 342 PIDIKVECETRVVVITGPNTGGKTASMKTLG-LASLMS--KAGLYLPAKNHPRLPWFDLIL---ADIGDHQSLEQNLSTF 415 (742)
Q Consensus 342 ~i~l~l~~g~~~~~ItGpNGsGKSTlLK~lG-li~~ma--q~G~~vPa~~~~~i~~~d~il---~~ig~~~~~~~~lstf 415 (742)
+.++.+..| ++++++||||+||||++..|+ ...... +.-.++.++. .+++.++++. ..+|..-..-.
T Consensus 177 ~~~~~~~~g-~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt-~RigA~eQL~~~a~~~gvpv~~~~----- 249 (767)
T PRK14723 177 DEDALLAQG-GVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDS-FRIGALEQLRIYGRILGVPVHAVK----- 249 (767)
T ss_pred CCCcccCCC-eEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcc-cchHHHHHHHHHHHhCCCCccccC-----
Confidence 345556667 899999999999999999884 332221 1223555554 5667766653 23333221111
Q ss_pred hHHHHHHHHHHHhcCCCcEEEEcCCCC-CCCHHHHHHHH
Q 004609 416 SGHISRIVDILELVSRESLVLIDEIGS-GTDPSEGVALA 453 (742)
Q Consensus 416 Sgg~krl~~~~~l~~~~~LlLLDEp~~-glDp~~~~aL~ 453 (742)
+. ..+..++..+.+.++||+|=||. +.|......+.
T Consensus 250 ~~--~~l~~al~~~~~~D~VLIDTAGRs~~d~~l~eel~ 286 (767)
T PRK14723 250 DA--ADLRFALAALGDKHLVLIDTVGMSQRDRNVSEQIA 286 (767)
T ss_pred CH--HHHHHHHHHhcCCCEEEEeCCCCCccCHHHHHHHH
Confidence 11 12344444556779999998884 35665444443
|
|
| >PRK04296 thymidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00033 Score=70.76 Aligned_cols=125 Identities=22% Similarity=0.203 Sum_probs=66.8
Q ss_pred eEEEEEeCCCCCcchHHhhHHhhhhhhhhc----eeecCCCCCCchHHHHHHHHcCCccccccccccchHHHHHHHHHHH
Q 004609 352 RVVVITGPNTGGKTASMKTLGLASLMSKAG----LYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILE 427 (742)
Q Consensus 352 ~~~~ItGpNGsGKSTlLK~lGli~~maq~G----~~vPa~~~~~i~~~d~il~~ig~~~~~~~~lstfSgg~krl~~~~~ 427 (742)
.+.+|+||.|+||||++..+..- +...| .+.|.-. ...+ ...+..++|..- .. ....+... -+..+..
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~--~~~~g~~v~i~k~~~d-~~~~-~~~i~~~lg~~~--~~-~~~~~~~~-~~~~~~~ 74 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYN--YEERGMKVLVFKPAID-DRYG-EGKVVSRIGLSR--EA-IPVSSDTD-IFELIEE 74 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHH--HHHcCCeEEEEecccc-cccc-CCcEecCCCCcc--cc-eEeCChHH-HHHHHHh
Confidence 68899999999999988766221 11122 2223211 1111 223444554321 11 00011111 1111111
Q ss_pred hcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCh-----------hhhhhcccccceecc
Q 004609 428 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYA-----------DLSCLKDKDTRFENA 489 (742)
Q Consensus 428 l~~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vlitTH~~-----------~l~~~a~~~~~i~~g 489 (742)
...+.++|++||.-. ++... +.. +++.++..|.+||++.++. .+..+||.+..+..-
T Consensus 75 ~~~~~dvviIDEaq~-l~~~~---v~~-l~~~l~~~g~~vi~tgl~~~~~~~~f~~~~~L~~~aD~V~~l~~v 142 (190)
T PRK04296 75 EGEKIDCVLIDEAQF-LDKEQ---VVQ-LAEVLDDLGIPVICYGLDTDFRGEPFEGSPYLLALADKVTELKAI 142 (190)
T ss_pred hCCCCCEEEEEcccc-CCHHH---HHH-HHHHHHHcCCeEEEEecCcccccCcCchHHHHHHhcCeEEEeeEE
Confidence 345678999999943 44332 333 6667777799999999992 355567776655543
|
|
| >PRK06526 transposase; Provisional | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00038 Score=73.62 Aligned_cols=104 Identities=22% Similarity=0.287 Sum_probs=60.0
Q ss_pred CCceEEEEEeCCCCCcchHHhhHHhhhhhhhhceeecCCCCCCchHHHHHHHHcCCccccccccccchHHHHHHHHHHHh
Q 004609 349 CETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILEL 428 (742)
Q Consensus 349 ~g~~~~~ItGpNGsGKSTlLK~lGli~~maq~G~~vPa~~~~~i~~~d~il~~ig~~~~~~~~lstfSgg~krl~~~~~l 428 (742)
.+ ..++|+||.|+|||+|...||.-.. +.|..+ .+.-...++..+.... ... .+...+..
T Consensus 97 ~~-~nlll~Gp~GtGKThLa~al~~~a~--~~g~~v------~f~t~~~l~~~l~~~~----~~~-------~~~~~l~~ 156 (254)
T PRK06526 97 GK-ENVVFLGPPGTGKTHLAIGLGIRAC--QAGHRV------LFATAAQWVARLAAAH----HAG-------RLQAELVK 156 (254)
T ss_pred cC-ceEEEEeCCCCchHHHHHHHHHHHH--HCCCch------hhhhHHHHHHHHHHHH----hcC-------cHHHHHHH
Confidence 44 6789999999999999999964322 233211 1111223333332110 001 11112223
Q ss_pred cCCCcEEEEcCCCCC-CCHHHHHHHHHHHHHHHhcCCcEEEEEecCh
Q 004609 429 VSRESLVLIDEIGSG-TDPSEGVALATSILQYLRDRVGLAVVTTHYA 474 (742)
Q Consensus 429 ~~~~~LlLLDEp~~g-lDp~~~~aL~~all~~l~~~~~~vlitTH~~ 474 (742)
+.+++||++||++.- .++.....|.. ++....+. ..+|++|+..
T Consensus 157 l~~~dlLIIDD~g~~~~~~~~~~~L~~-li~~r~~~-~s~IitSn~~ 201 (254)
T PRK06526 157 LGRYPLLIVDEVGYIPFEPEAANLFFQ-LVSSRYER-ASLIVTSNKP 201 (254)
T ss_pred hccCCEEEEcccccCCCCHHHHHHHHH-HHHHHHhc-CCEEEEcCCC
Confidence 467899999999864 56666666666 55544443 4588888874
|
|
| >PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0006 Score=75.71 Aligned_cols=103 Identities=21% Similarity=0.231 Sum_probs=61.0
Q ss_pred cccccccCCceEEEEEeCCCCCcchHHhhHHhhhhhh---hhceeecCCCCCCchHHHHHH---HHcCCccccccccccc
Q 004609 342 PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMS---KAGLYLPAKNHPRLPWFDLIL---ADIGDHQSLEQNLSTF 415 (742)
Q Consensus 342 ~i~l~l~~g~~~~~ItGpNGsGKSTlLK~lGli~~ma---q~G~~vPa~~~~~i~~~d~il---~~ig~~~~~~~~lstf 415 (742)
.++..+..| .+++++||||+||||++..|+...... ....++..+. .+++-.+++- ..+|..-..-+....|
T Consensus 129 ~~~~~~~~g-~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~-~R~ga~EqL~~~a~~~gv~~~~~~~~~~l 206 (374)
T PRK14722 129 SEDALMERG-GVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDS-YRIGGHEQLRIFGKILGVPVHAVKDGGDL 206 (374)
T ss_pred CCCccccCC-cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEeccc-ccccHHHHHHHHHHHcCCceEecCCcccH
Confidence 455667788 899999999999999999985332221 1223555554 4555555542 2334322222222222
Q ss_pred hHHHHHHHHHHHhcCCCcEEEEcCCCCC-CCHHHHHHHH
Q 004609 416 SGHISRIVDILELVSRESLVLIDEIGSG-TDPSEGVALA 453 (742)
Q Consensus 416 Sgg~krl~~~~~l~~~~~LlLLDEp~~g-lDp~~~~aL~ 453 (742)
..++....+.++||+|.||.. .|..-...+.
T Consensus 207 -------~~~l~~l~~~DlVLIDTaG~~~~d~~l~e~La 238 (374)
T PRK14722 207 -------QLALAELRNKHMVLIDTIGMSQRDRTVSDQIA 238 (374)
T ss_pred -------HHHHHHhcCCCEEEEcCCCCCcccHHHHHHHH
Confidence 223444577899999999865 4554444443
|
|
| >TIGR02237 recomb_radB DNA repair and recombination protein RadB | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00087 Score=68.18 Aligned_cols=126 Identities=21% Similarity=0.205 Sum_probs=66.7
Q ss_pred ccCCceEEEEEeCCCCCcchHHhhHHhhhh-hhhhceeecCCCCCCchHHHHHHHHc-C--CccccccccccchHHHHHH
Q 004609 347 VECETRVVVITGPNTGGKTASMKTLGLASL-MSKAGLYLPAKNHPRLPWFDLILADI-G--DHQSLEQNLSTFSGHISRI 422 (742)
Q Consensus 347 l~~g~~~~~ItGpNGsGKSTlLK~lGli~~-maq~G~~vPa~~~~~i~~~d~il~~i-g--~~~~~~~~lstfSgg~krl 422 (742)
++.| .++.|+||+|+||||+.-.+..... ......|+..++ .....+.++.... + ....+-..+.++.....-+
T Consensus 9 i~~g-~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~-~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 86 (209)
T TIGR02237 9 VERG-TITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG-LSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAI 86 (209)
T ss_pred CCCC-eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC-CCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHH
Confidence 4578 8999999999999999987743322 223456777664 2333333333221 0 0111111111111111123
Q ss_pred HHHHHhc--CCCcEEEEcCCCCCCCHH------H-HHHH---HHHHHHHHhcCCcEEEEEecCh
Q 004609 423 VDILELV--SRESLVLIDEIGSGTDPS------E-GVAL---ATSILQYLRDRVGLAVVTTHYA 474 (742)
Q Consensus 423 ~~~~~l~--~~~~LlLLDEp~~glDp~------~-~~aL---~~all~~l~~~~~~vlitTH~~ 474 (742)
..+..++ .++++|++|-.++-.... + ...+ +..+....++.+.++|+|+|-.
T Consensus 87 ~~l~~~~~~~~~~lvVIDSis~l~~~~~~~~~~~~~~~l~~~~~~L~~~~~~~~v~vl~t~~~~ 150 (209)
T TIGR02237 87 QKTSKFIDRDSASLVVVDSFTALYRLELSDDRISRNRELARQLTLLLSLARKKNLAVVITNQVY 150 (209)
T ss_pred HHHHHHHhhcCccEEEEeCcHHHhHHHhCCccHHHHHHHHHHHHHHHHHHHHcCCEEEEEcccE
Confidence 3333332 368999999998643211 0 1122 2324444467788999998853
|
This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236). |
| >PF13555 AAA_29: P-loop containing region of AAA domain | Back alignment and domain information |
|---|
Probab=97.43 E-value=8.5e-05 Score=61.18 Aligned_cols=27 Identities=33% Similarity=0.601 Sum_probs=22.2
Q ss_pred cccccC-CceEEEEEeCCCCCcchHHhhH
Q 004609 344 DIKVEC-ETRVVVITGPNTGGKTASMKTL 371 (742)
Q Consensus 344 ~l~l~~-g~~~~~ItGpNGsGKSTlLK~l 371 (742)
++.+.+ | .+.+|+||||+||||+|..+
T Consensus 16 ~~~~~~~g-~~tli~G~nGsGKSTllDAi 43 (62)
T PF13555_consen 16 TIDFDPRG-DVTLITGPNGSGKSTLLDAI 43 (62)
T ss_pred EEeecCCC-cEEEEECCCCCCHHHHHHHH
Confidence 344543 4 58999999999999999998
|
|
| >PRK10865 protein disaggregation chaperone; Provisional | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0028 Score=78.04 Aligned_cols=113 Identities=17% Similarity=0.199 Sum_probs=55.2
Q ss_pred eEEEEEeCCCCCcchHHhhHHhhhhhhhhceeecCCCCCCchHHHHHHHHcCCccccccccccchHH-HHHHHHHHH---
Q 004609 352 RVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGH-ISRIVDILE--- 427 (742)
Q Consensus 352 ~~~~ItGpNGsGKSTlLK~lGli~~maq~G~~vPa~~~~~i~~~d~il~~ig~~~~~~~~lstfSgg-~krl~~~~~--- 427 (742)
...+|+||.|+||||+.+.++.-.. .| .+|..-. ...++ + +.....+ .+ ..+-|+ +.|+..+..
T Consensus 200 ~n~lL~G~pGvGKT~l~~~la~~i~---~~-~vp~~l~-~~~~~---~--l~l~~l~-ag-~~~~g~~e~~lk~~~~~~~ 267 (857)
T PRK10865 200 NNPVLIGEPGVGKTAIVEGLAQRII---NG-EVPEGLK-GRRVL---A--LDMGALV-AG-AKYRGEFEERLKGVLNDLA 267 (857)
T ss_pred CceEEECCCCCCHHHHHHHHHHHhh---cC-CCchhhC-CCEEE---E--Eehhhhh-hc-cchhhhhHHHHHHHHHHHH
Confidence 4678999999999999998843321 12 4443211 11110 0 0000000 00 112222 224444322
Q ss_pred hcCCCcEEEEcCCC----CCCCHHHHHHHHHHHHHHHhcCCcEEEEEecChhhh
Q 004609 428 LVSRESLVLIDEIG----SGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLS 477 (742)
Q Consensus 428 l~~~~~LlLLDEp~----~glDp~~~~aL~~all~~l~~~~~~vlitTH~~~l~ 477 (742)
....+.+|++||.= +|-.. .+...+..+.-.+.+....+|.+|...+..
T Consensus 268 ~~~~~~ILfIDEih~l~~~~~~~-~~~d~~~~lkp~l~~g~l~~IgaTt~~e~r 320 (857)
T PRK10865 268 KQEGNVILFIDELHTMVGAGKAD-GAMDAGNMLKPALARGELHCVGATTLDEYR 320 (857)
T ss_pred HcCCCeEEEEecHHHhccCCCCc-cchhHHHHhcchhhcCCCeEEEcCCCHHHH
Confidence 23568899999973 22111 112234434445555455777777766543
|
|
| >PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00072 Score=75.98 Aligned_cols=103 Identities=23% Similarity=0.219 Sum_probs=56.8
Q ss_pred cCCceEEEEEeCCCCCcchHHhhHHhhhhhhhhceeecCCCCCCchHHHHHHHHcCCccccccccccchHHHH--HHHHH
Q 004609 348 ECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHIS--RIVDI 425 (742)
Q Consensus 348 ~~g~~~~~ItGpNGsGKSTlLK~lGli~~maq~G~~vPa~~~~~i~~~d~il~~ig~~~~~~~~lstfSgg~k--rl~~~ 425 (742)
.++ ..+.|.||+|+|||++.+.++-. .+.. ...+..- .+.. +.+. .+.+ +-.+.
T Consensus 177 ~~p-kgvLL~GppGTGKT~LAkalA~~-----l~~~-----fi~i~~s-~l~~---------k~~g---e~~~~lr~lf~ 232 (398)
T PTZ00454 177 DPP-RGVLLYGPPGTGKTMLAKAVAHH-----TTAT-----FIRVVGS-EFVQ---------KYLG---EGPRMVRDVFR 232 (398)
T ss_pred CCC-ceEEEECCCCCCHHHHHHHHHHh-----cCCC-----EEEEehH-HHHH---------Hhcc---hhHHHHHHHHH
Confidence 344 56889999999999999999221 1100 0001000 0110 0010 0122 22233
Q ss_pred HHhcCCCcEEEEcCC----------CCCCCHHHHHHHHHHHHHHHhc----CCcEEEEEecChh
Q 004609 426 LELVSRESLVLIDEI----------GSGTDPSEGVALATSILQYLRD----RVGLAVVTTHYAD 475 (742)
Q Consensus 426 ~~l~~~~~LlLLDEp----------~~glDp~~~~aL~~all~~l~~----~~~~vlitTH~~~ 475 (742)
.+....|.+|++||+ .+|.|......+.. ++..+.. .+..+|++||+.+
T Consensus 233 ~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~-LL~~ld~~~~~~~v~VI~aTN~~d 295 (398)
T PTZ00454 233 LARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLE-LLNQMDGFDQTTNVKVIMATNRAD 295 (398)
T ss_pred HHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHH-HHHHhhccCCCCCEEEEEecCCch
Confidence 445678999999993 44556555555544 5555432 2457899999865
|
|
| >PTZ00035 Rad51 protein; Provisional | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0014 Score=72.18 Aligned_cols=126 Identities=14% Similarity=0.131 Sum_probs=70.2
Q ss_pred ccCCceEEEEEeCCCCCcchHHhhHHhhhhh-------hhhceeecCCCCCCchHHHHHHHHcCCcc-cccc---ccccc
Q 004609 347 VECETRVVVITGPNTGGKTASMKTLGLASLM-------SKAGLYLPAKNHPRLPWFDLILADIGDHQ-SLEQ---NLSTF 415 (742)
Q Consensus 347 l~~g~~~~~ItGpNGsGKSTlLK~lGli~~m-------aq~G~~vPa~~~~~i~~~d~il~~ig~~~-~~~~---~lstf 415 (742)
++.| .++.|+||||+|||||+.++.....+ ....+|+-.++......+.++...++... .+-. ....+
T Consensus 115 i~~G-~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri~~ia~~~g~~~~~~l~nI~~~~~~ 193 (337)
T PTZ00035 115 IETG-SITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERIVQIAERFGLDPEDVLDNIAYARAY 193 (337)
T ss_pred CCCC-eEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHHHHHHHHhCCChHhHhhceEEEccC
Confidence 4567 89999999999999999988443321 11123655554323334556666666432 1111 22345
Q ss_pred hHHHH--HHHHHHHh--cCCCcEEEEcCCCCCCC--------HHHHHH----HHHHHHHHHhcCCcEEEEEecC
Q 004609 416 SGHIS--RIVDILEL--VSRESLVLIDEIGSGTD--------PSEGVA----LATSILQYLRDRVGLAVVTTHY 473 (742)
Q Consensus 416 Sgg~k--rl~~~~~l--~~~~~LlLLDEp~~glD--------p~~~~a----L~~all~~l~~~~~~vlitTH~ 473 (742)
+.++. .+..+... -.++.+|++|=.++..- ..++.. ++..+.....+.++++|+|.|-
T Consensus 194 ~~e~~~~~l~~~~~~l~~~~~~lvVIDSital~r~~~~~~~~~~~r~~~l~~~~~~L~~la~~~~vavvvtNqv 267 (337)
T PTZ00035 194 NHEHQMQLLSQAAAKMAEERFALLIVDSATALFRVDYSGRGELAERQQHLGKFLRALQKLADEFNVAVVITNQV 267 (337)
T ss_pred CHHHHHHHHHHHHHHhhccCccEEEEECcHHhhhhhccCcccHHHHHHHHHHHHHHHHHHHHHcCcEEEEecce
Confidence 54433 23222222 25689999999887432 223333 2222333334567888887765
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 742 | ||||
| 1nne_A | 765 | Crystal Structure Of The Muts-adpbef3-dna Complex L | 2e-21 | ||
| 1ewq_A | 765 | Crystal Structure Taq Muts Complexed With A Heterod | 3e-19 | ||
| 1fw6_A | 768 | Crystal Structure Of A Taq Muts-Dna-Adp Ternary Com | 3e-19 | ||
| 1ewr_A | 649 | Crystal Structure Of Taq Muts Length = 649 | 3e-19 | ||
| 1ng9_A | 800 | E.Coli Muts R697a: An Atpase-Asymmetry Mutant Lengt | 9e-19 | ||
| 1wbd_A | 800 | Crystal Structure Of E. Coli Dna Mismatch Repair En | 2e-18 | ||
| 1oh5_A | 800 | The Crystal Structure Of E. Coli Muts Binding To Dn | 2e-18 | ||
| 1wb9_A | 800 | Crystal Structure Of E. Coli Dna Mismatch Repair En | 2e-18 | ||
| 1wbb_A | 800 | Crystal Structure Of E. Coli Dna Mismatch Repair En | 2e-18 | ||
| 3thw_B | 918 | Human Mutsbeta Complexed With An Idl Of 4 Bases (Lo | 3e-18 | ||
| 2o8e_A | 934 | Human Mutsalpha (Msh2MSH6) BOUND TO A G T MISPAIR, | 3e-18 | ||
| 2o8b_A | 934 | Human Mutsalpha (Msh2MSH6) BOUND TO ADP AND A G T M | 3e-18 | ||
| 2o8b_B | 1022 | Human Mutsalpha (Msh2MSH6) BOUND TO ADP AND A G T M | 4e-18 | ||
| 3k0s_A | 799 | Crystal Structure Of E.Coli Dna Mismatch Repair Pro | 6e-18 | ||
| 1e3m_A | 800 | The Crystal Structure Of E. Coli Muts Binding To Dn | 2e-16 |
| >pdb|1NNE|A Chain A, Crystal Structure Of The Muts-adpbef3-dna Complex Length = 765 | Back alignment and structure |
|
| >pdb|1EWQ|A Chain A, Crystal Structure Taq Muts Complexed With A Heteroduplex Dna At 2.2 A Resolution Length = 765 | Back alignment and structure |
|
| >pdb|1FW6|A Chain A, Crystal Structure Of A Taq Muts-Dna-Adp Ternary Complex Length = 768 | Back alignment and structure |
|
| >pdb|1EWR|A Chain A, Crystal Structure Of Taq Muts Length = 649 | Back alignment and structure |
|
| >pdb|1NG9|A Chain A, E.Coli Muts R697a: An Atpase-Asymmetry Mutant Length = 800 | Back alignment and structure |
|
| >pdb|1WBD|A Chain A, Crystal Structure Of E. Coli Dna Mismatch Repair Enzyme Muts, E38q Mutant, In Complex With A G.T Mismatch Length = 800 | Back alignment and structure |
|
| >pdb|1OH5|A Chain A, The Crystal Structure Of E. Coli Muts Binding To Dna With A C:a Mismatch Length = 800 | Back alignment and structure |
|
| >pdb|1WB9|A Chain A, Crystal Structure Of E. Coli Dna Mismatch Repair Enzyme Muts, E38t Mutant, In Complex With A G.T Mismatch Length = 800 | Back alignment and structure |
|
| >pdb|1WBB|A Chain A, Crystal Structure Of E. Coli Dna Mismatch Repair Enzyme Muts, E38a Mutant, In Complex With A G.T Mismatch Length = 800 | Back alignment and structure |
|
| >pdb|3THW|B Chain B, Human Mutsbeta Complexed With An Idl Of 4 Bases (Loop4) And Adp Length = 918 | Back alignment and structure |
|
| >pdb|2O8E|A Chain A, Human Mutsalpha (Msh2MSH6) BOUND TO A G T MISPAIR, WITH ADP BOUND TO Msh2 Only Length = 934 | Back alignment and structure |
|
| >pdb|2O8B|A Chain A, Human Mutsalpha (Msh2MSH6) BOUND TO ADP AND A G T MISPAIR Length = 934 | Back alignment and structure |
|
| >pdb|2O8B|B Chain B, Human Mutsalpha (Msh2MSH6) BOUND TO ADP AND A G T MISPAIR Length = 1022 | Back alignment and structure |
|
| >pdb|3K0S|A Chain A, Crystal Structure Of E.Coli Dna Mismatch Repair Protein Muts, D693n Mutant, In Complex With Gt Mismatched Dna Length = 799 | Back alignment and structure |
|
| >pdb|1E3M|A Chain A, The Crystal Structure Of E. Coli Muts Binding To Dna With A G:t Mismatch Length = 800 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* Length = 934 | Back alignment and structure |
|---|
Score = 102 bits (255), Expect = 2e-22
Identities = 77/371 (20%), Positives = 151/371 (40%), Gaps = 53/371 (14%)
Query: 227 IAEETAILSLLTAEIAKSEREIKYLMDRVLEID--LAFARAGFAQWMDGVCPILSSQSHV 284
+ AI+ + + ++ L D + ++D ++FA + V P +
Sbjct: 571 EEAQDAIVKEIVNISSGYVEPMQTLNDVLAQLDAVVSFAHVSNGAPVPYVRPAI----LE 626
Query: 285 SFDSSINIEGIKHPLLLGSSLRSLSAASSNSNPLKSDVENSEMTVGSLSKGISDFPVPID 344
I ++ +H + E+ F +P D
Sbjct: 627 KGQGRIILKASRHACV-------------------------EVQDEI------AF-IPND 654
Query: 345 IKVECET-RVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIG 403
+ E + +ITGPN GGK+ ++ G+ LM++ G ++P + + D ILA +G
Sbjct: 655 VYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCE-SAEVSIVDCILARVG 713
Query: 404 DHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDR 463
S + +STF + IL +++SL++IDE+G GT +G LA +I +Y+ +
Sbjct: 714 AGDSQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATK 773
Query: 464 VG-LAVVTTHYADLSCLKDKDTRFEN---AATEFSLETLRPTYRILWGSTGDSNALNIAK 519
+G + TH+ +L+ L ++ N A ETL Y++ G S +++A+
Sbjct: 774 IGAFCMFATHFHELTALANQIPTVNNLHVTALTTE-ETLTMLYQVKKGVCDQSFGIHVAE 832
Query: 520 SIGFDRKIIQRAQKLVERLRPERQQHRKSELYQSLMEERRKLESQARTAASLHAEIMDLY 579
F + +I+ A++ L E Q+ + +E A+ + +
Sbjct: 833 LANFPKHVIECAKQKALEL--EEFQYIGES------QGYDIMEPAAKKCYLEREQGEKII 884
Query: 580 REIEDEAKDLD 590
+E + K +
Sbjct: 885 QEFLSKVKQMP 895
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 93.8 bits (232), Expect = 9e-20
Identities = 101/709 (14%), Positives = 219/709 (30%), Gaps = 230/709 (32%)
Query: 83 TEAAELD---GDSLQRYSPLLELLKN--CNFLTELEEKIGFCIDCKLLIILDRASED--- 134
E E D L + + N C + ++ + I + +I+ A
Sbjct: 9 FETGEHQYQYKDILSVFED--AFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR 66
Query: 135 -LELIRAERKRNMEN-LDSLLKK----VAAQIFQAGGIDKPLITKR----RSRMCVGIKA 184
+ ++++ ++ ++ +L+ + + I + ++T+ R R+ +
Sbjct: 67 LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPI-KTEQRQPSMMTRMYIEQRDRLYNDNQV 125
Query: 185 SHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEETAIL---------S 235
KY NVS ++P +++R + E+ +L +
Sbjct: 126 FAKY--------NVSR------LQPY-------LKLRQALLELRPAKNVLIDGVLGSGKT 164
Query: 236 LLTAEIAKSEREIKYLMDRVLEIDLAFARAGFAQWMD-GVC------------------P 276
+ ++ S + + F W++ C P
Sbjct: 165 WVALDVCLSYK-----------VQCKMDFKIF--WLNLKNCNSPETVLEMLQKLLYQIDP 211
Query: 277 ILSSQSHVSFDSSINIEGIKHPLLLGSSLRSLSAASSNSNPLK--SDVENSEMTVGSLSK 334
+S+S S + + I I+ LR L + N L +V+N++
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQA------ELRRLLKSKPYENCLLVLLNVQNAKA------- 258
Query: 335 GISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPW 394
+ F ++ C ++++ T + +
Sbjct: 259 -WNAF----NLS--C--KILLTT------RFKQV-------------------------- 277
Query: 395 FDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVA--- 451
D + A H SL+ + T + ++ L+ + L + P E +
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPD-----EVKSLLLK---YL--DCRPQDLPREVLTTNP 327
Query: 452 LATSIL-----------QYLRDRVGLAVVTTHYADLSCLKDKDTR--FENAATEFSLETL 498
SI+ + + T + L+ L+ + R F+ + F
Sbjct: 328 RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV-FPPSAH 386
Query: 499 RP--TYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVERLRPERQQHRKSELYQSLME 556
P ++W S+ + + + LVE+ + + + +E
Sbjct: 387 IPTILLSLIWFDVIKSDVMVVVNK--LHKY------SLVEK----QPKESTISIPSIYLE 434
Query: 557 ERRKLESQARTAASLHAEIMDLYR-----EIEDEAKDLDRR------AAHLKAKETQQVQ 605
+ KLE++ +LH I+D Y + +D + HLK E +
Sbjct: 435 LKVKLENEY----ALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIE--HPE 488
Query: 606 QELNFAKVQIDTVVQDF-ENQLR------DASADEINSL--IKESESAIAAIVEAHRPDD 656
+ F V +D F E ++R +AS +N+L +K + I + P
Sbjct: 489 RMTLFRMVFLDF---RFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYIC----DNDPKY 541
Query: 657 DFSVSETNTSSFTPQFGEQVHVKSLGDKLATVVEVPGDDDTVLVQYGKM 705
+ V+ F P+ E + T L++ M
Sbjct: 542 ERLVNAILD--FLPKIEENLIC---------------SKYTDLLRIALM 573
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 48.3 bits (114), Expect = 9e-06
Identities = 68/492 (13%), Positives = 147/492 (29%), Gaps = 135/492 (27%)
Query: 13 FGKSLEESQKLLNQTSAALAMMQSQPLDLSTIEDIAGI--LNSAVSGQLLSPSEICAVRR 70
GK+ AL + S + ++ I LN SP +
Sbjct: 161 SGKT-----------WVALDVCLSYKV-QCKMDF--KIFWLNL---KNCNSPETV----- 198
Query: 71 TLRAVNNVWKKLTEAAELDGDSLQRY--------SPLLELLKNCNFLTEL-------EEK 115
L + + ++ D + L LLK+ + L K
Sbjct: 199 -LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAK 257
Query: 116 I--GFCIDCKLLII-LDRA-SEDLELIRAERKRNMENLDSLLKKVAAQIF---------- 161
F + CK+L+ + ++ L + +L +
Sbjct: 258 AWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD 317
Query: 162 ---QAGGIDKPLITKRRSRMCVGIKASHK--------YLLPDGIALNVSSSGATYFMEPK 210
+ + P I S + + + L + +EP
Sbjct: 318 LPREVLTTN-PRR-------LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA 369
Query: 211 GAVEFNNMEVRLS----NSEIAEETAILSLLTAEIAKSEREIKYLMDRVLEIDLAFARAG 266
E+ M RLS ++ I LSL+ ++ + ++ +++++ + L +
Sbjct: 370 ---EYRKMFDRLSVFPPSAHIPTIL--LSLIWFDV--IKSDVMVVVNKLHKYSLV-EK-- 419
Query: 267 FAQWMDGVCPILSSQSHVSFDSSINIEGIK--HPLLLGSSLRSLSAASSNSNPLKSD--- 321
Q + I + + + +E H ++ + S + P D
Sbjct: 420 --QPKESTISIP----SIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF 473
Query: 322 ----------VENSEMTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTL 371
+E+ E + DF ++ K+ + TA +
Sbjct: 474 YSHIGHHLKNIEHPER-MTLFRMVFLDFRF-LEQKIR-----------HDS--TAWNASG 518
Query: 372 GLASLMSKAGLYLP--AKNHPRLPWFDLILADIGDH-QSLEQNLSTFSGHISRIVDILEL 428
+ + + + Y P N P+ ++ ++ I D +E+NL S+ D+L +
Sbjct: 519 SILNTLQQLKFYKPYICDNDPK---YERLVNAILDFLPKIEENL-----ICSKYTDLLRI 570
Query: 429 -VSRESLVLIDE 439
+ E + +E
Sbjct: 571 ALMAEDEAIFEE 582
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* Length = 1022 | Back alignment and structure |
|---|
Score = 84.0 bits (208), Expect = 8e-17
Identities = 71/369 (19%), Positives = 135/369 (36%), Gaps = 57/369 (15%)
Query: 230 ETAILSLLTAEIAKSEREIKYLMDRVLEID--LAFARAGFAQWMDGVCPILSSQSHVSFD 287
+ L K+ ++ + ++ + +D L A P++
Sbjct: 691 LKDCMRRLFYNFDKNYKDWQSAVECIAVLDVLLCLANYSRGGDGPMCRPVILLPE--DTP 748
Query: 288 SSINIEGIKHPLLLGSSLRSLSAASSNSNPLKSDVENSEMTVGSLSKGISDFPVPIDIKV 347
+ ++G +HP + ++ N + E E G
Sbjct: 749 PFLELKGSRHPCIT----KTFFGDDFIPNDILIGCEEEEQENGK---------------- 788
Query: 348 ECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIG--DH 405
V++TGPN GGK+ M+ GL ++M++ G Y+PA+ RL D + +G D
Sbjct: 789 ---AYCVLVTGPNMGGKSTLMRQAGLLAVMAQMGCYVPAE-VCRLTPIDRVFTRLGASDR 844
Query: 406 QSLEQNLSTFSGHISRIV------DILELVSRESLVLIDEIGSGTDPSEGVALATSILQY 459
+ STF V IL + SLVL+DE+G GT +G A+A ++++
Sbjct: 845 --IMSGESTF------FVELSETASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKE 896
Query: 460 LRDRVG-LAVVTTHYADLSCLKDKDTRFEN---AATEFSLETLRPT------YRILWGST 509
L + + + +THY L ++ A + Y+ + G+
Sbjct: 897 LAETIKCRTLFSTHYHSLVEDYSQNVAVRLGHMACMVENECEDPSQETITFLYKFIKGAC 956
Query: 510 GDSNALNIAKSIGFDRKIIQRAQKLVERLRPERQQHRKSELYQSLMEERRKLESQARTAA 569
S N A+ ++IQ+ + E + ++ L++ + + A
Sbjct: 957 PKSYGFNAARLANLPEEVIQKGHRKAREF--E-KMNQSLRLFREVCLASERSTVDAEAVH 1013
Query: 570 SLHAEIMDL 578
L I +L
Sbjct: 1014 KLLTLIKEL 1022
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* Length = 918 | Back alignment and structure |
|---|
Score = 81.9 bits (203), Expect = 4e-16
Identities = 62/263 (23%), Positives = 113/263 (42%), Gaps = 32/263 (12%)
Query: 341 VPIDIKVECET-RVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLIL 399
VP + + ++ RV++ITGPN GGK++ +K + L ++M++ G Y+PA+ + D I
Sbjct: 662 VPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAE-EATIGIVDGIF 720
Query: 400 ADIGDHQSLEQNLSTFSGHISRIV------DILELVSRESLVLIDEIGSGTDPSEGVALA 453
+G ++ + STF + +I+ + +SLV++DE+G GT +G+A+A
Sbjct: 721 TRMGAADNIYKGRSTF------MEELTDTAEIIRKATSQSLVILDELGRGTSTHDGIAIA 774
Query: 454 TSILQYLRDRVG-LAVVTTHYADLSCLKDK-DTRFEN---AATEFSLETLRPT------- 501
+ L+Y V L + THY + L+ + N E+
Sbjct: 775 YATLEYFIRDVKSLTLFVTHYPPVCELEKNYSHQVGNYHMGFLVSEDESKLDPGAAEQVP 834
Query: 502 ------YRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVERLRPERQQHRKSELYQSLM 555
Y+I G S LN+AK +I+++A + L RK Y + +
Sbjct: 835 DFVTFLYQITRGIAARSYGLNVAKLADVPGEILKKAAHKSKELEGLINTKRKRLKYFAKL 894
Query: 556 EERRKLESQARTAASLHAEIMDL 578
+ + + E
Sbjct: 895 WTMHNAQDLQKWTEEFNMEETQT 917
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* Length = 800 | Back alignment and structure |
|---|
Score = 80.2 bits (199), Expect = 1e-15
Identities = 61/214 (28%), Positives = 103/214 (48%), Gaps = 30/214 (14%)
Query: 341 VPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILA 400
+ + + + R+++ITGPN GGK+ M+ L +LM+ G Y+PA+ + D I
Sbjct: 597 IANPLNLSPQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQ-KVEIGPIDRIFT 655
Query: 401 DIGDHQSLEQNLSTFSGHISRIV------DILELVSRESLVLIDEIGSGTDPSEGVALAT 454
+G L STF +V +IL + SLVL+DEIG GT +G++LA
Sbjct: 656 RVGAADDLASGRSTF------MVEMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAW 709
Query: 455 SILQYLRDRVG-LAVVTTHYADLSCLKDKDTRFEN---AATE------FSLETLRPTYRI 504
+ + L +++ L + THY +L+ L +K N A E F + +
Sbjct: 710 ACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDALEHGDTIAF----MH---SV 762
Query: 505 LWGSTGDSNALNIAKSIGFDRKIIQRAQKLVERL 538
G+ S L +A G +++I+RA++ + L
Sbjct: 763 QDGAASKSYGLAVAALAGVPKEVIKRARQKLREL 796
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* Length = 765 | Back alignment and structure |
|---|
Score = 74.4 bits (184), Expect = 7e-14
Identities = 80/329 (24%), Positives = 135/329 (41%), Gaps = 77/329 (23%)
Query: 230 ETAILSLLTAEIAKSEREIKYLMDRVLEIDLAFARAGFAQWMDGVCPILSSQSHVSFDSS 289
E + + + ++ + E+D+ A A A V P F
Sbjct: 499 EEEVFLEVRERAKRQAEALREAARILAELDVYAALAEVAVRYGYVRP--------RFGDR 550
Query: 290 INIEGIKHPLLLGSSLRSLSAASSNSNPLKSDVENSEMTVGSLSKGISDFPVPIDIKVEC 349
+ I +HP+ VE +F VP D+++
Sbjct: 551 LQIRAGRHPV----------------------VERRT-----------EF-VPNDLEMA- 575
Query: 350 ETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLE 409
+V+ITGPN GK+ ++ L +L+++ G ++PA+ LP FD I IG L
Sbjct: 576 -HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPAE-EAHLPLFDGIYTRIGASDDLA 633
Query: 410 QNLSTFSGHISRIV------DILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDR 463
STF +V IL+ + SLVL+DE+G GT +GVA+AT++ + L +R
Sbjct: 634 GGKSTF------MVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHER 687
Query: 464 VGLAVVTTHYADLSCLKDKDTRFEN---AATE------FSLETLRPTYRILWGSTGDSNA 514
+ THY +L+ L R +N AA E F ++L G S
Sbjct: 688 RAYTLFATHYFELTALGLP--RLKNLHVAAREEAGGLVF----YH---QVLPGPASKSYG 738
Query: 515 LNIAKSIGFDRKIIQRAQKLVERLRPERQ 543
+ +A G ++++ RA+ L++ + +
Sbjct: 739 VEVAAMAGLPKEVVARARALLQAM--AAR 765
|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
Score = 50.2 bits (120), Expect = 2e-06
Identities = 24/130 (18%), Positives = 57/130 (43%), Gaps = 4/130 (3%)
Query: 525 RKIIQRAQKLVERLRPERQ-QHRKSELYQSLMEERRKLESQARTAASLHAEIMDLYREIE 583
++ + L E+L+ E + E+ L ++++LE + E + ++++
Sbjct: 888 TQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQ 947
Query: 584 DEAKDLDRRAAHLKAK--ETQQVQQELNFAKVQIDTVVQDFENQLRDASADEINSLIKES 641
E K + ++ L+ + E + +Q+L KV D ++ E+ + D+ N L KE
Sbjct: 948 AEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIME-DQNNKLTKER 1006
Query: 642 ESAIAAIVEA 651
+ + +
Sbjct: 1007 KLLEERVSDL 1016
|
| >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 | Back alignment and structure |
|---|
Score = 42.6 bits (99), Expect = 8e-05
Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 11/40 (27%)
Query: 7 QKAQIPFGKSLEESQKLLNQTSA-ALAMMQSQPLDLSTIE 45
+K + K L+ S KL SA ALA+ +T+E
Sbjct: 18 EKQAL---KKLQASLKLYADDSAPALAIK-------ATME 47
|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 4e-04
Identities = 27/140 (19%), Positives = 69/140 (49%), Gaps = 4/140 (2%)
Query: 518 AKSIGFDRKIIQRAQKLVERLRPERQQHRKSELYQSLMEERRKLESQARTAASLHAEIMD 577
A+S+ +K+ + + +L +R+ +++ Y+SL+E+ LE T ++
Sbjct: 913 ARSVERYKKLHIGLENKIMQL--QRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVE 970
Query: 578 LYREIEDEAKDLDRRAAHLKAKETQQVQQELNFAKVQIDTVVQDFENQLRDASADEINSL 637
R E+EAK+ R L+ +E ++++EL+ + + T ++++ ++ + + ++ L
Sbjct: 971 RLRMSEEEAKNATNRVLSLQ-EEIAKLRKELHQTQTEKKT-IEEWADKYKHETEQLVSEL 1028
Query: 638 IKESESAIAAIVEAHRPDDD 657
+++ E +R D
Sbjct: 1029 KEQNTLLKTEKEELNRRIHD 1048
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 742 | ||||
| d1wb9a2 | 234 | c.37.1.12 (A:567-800) DNA repair protein MutS, the | 5e-38 | |
| d1ewqa2 | 224 | c.37.1.12 (A:542-765) DNA repair protein MutS, the | 1e-35 |
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} Length = 234 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Score = 139 bits (351), Expect = 5e-38
Identities = 64/268 (23%), Positives = 116/268 (43%), Gaps = 42/268 (15%)
Query: 274 VCPILSSQSHVSFDSSINIEGIKHPLLLGSSLRSLSAASSNSNPLKSDVENSEMTVGSLS 333
CP I I +HP++
Sbjct: 2 TCPTFID------KPGIRITEGRHPVV--------------------------------E 23
Query: 334 KGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLP 393
+ +++ + + + + R+++ITGPN GGK+ M+ L +LM+ G Y+PA+ P
Sbjct: 24 QVLNEPFIANPLNLSPQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQKVEIGP 83
Query: 394 WFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALA 453
I +G L STF ++ +IL + SLVL+DEIG GT +G++LA
Sbjct: 84 IDR-IFTRVGAADDLASGRSTFMVEMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLA 142
Query: 454 TSILQYLRDRVG-LAVVTTHYADLSCLKDKDTRFENAATEFS--LETLRPTYRILWGSTG 510
+ + L +++ L + THY +L+ L +K N + +T+ + + G+
Sbjct: 143 WACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDALEHGDTIAFMHSVQDGAAS 202
Query: 511 DSNALNIAKSIGFDRKIIQRAQKLVERL 538
S L +A G +++I+RA++ + L
Sbjct: 203 KSYGLAVAALAGVPKEVIKRARQKLREL 230
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} Length = 224 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Score = 132 bits (332), Expect = 1e-35
Identities = 66/253 (26%), Positives = 114/253 (45%), Gaps = 37/253 (14%)
Query: 286 FDSSINIEGIKHPLLLGSSLRSLSAASSNSNPLKSDVENSEMTVGSLSKGISDFPVPIDI 345
F + I +HP++ E VP D+
Sbjct: 6 FGDRLQIRAGRHPVV----------------------ERRTE------------FVPNDL 31
Query: 346 KVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDH 405
++ E +V+ITGPN GK+ ++ L +L+++ G ++PA LP FD I IG
Sbjct: 32 EMAHE--LVLITGPNMAGKSTFLRQTALIALLAQVGSFVPA-EEAHLPLFDGIYTRIGAS 88
Query: 406 QSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVG 465
L STF + + IL+ + SLVL+DE+G GT +GVA+AT++ + L +R
Sbjct: 89 DDLAGGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRA 148
Query: 466 LAVVTTHYADLSCLKDKDTRFENAATEFSLETLRPTYRILWGSTGDSNALNIAKSIGFDR 525
+ THY +L+ L + + A L +++L G S + +A G +
Sbjct: 149 YTLFATHYFELTALGLPRLKNLHVAAREEAGGLVFYHQVLPGPASKSYGVEVAAMAGLPK 208
Query: 526 KIIQRAQKLVERL 538
+++ RA+ L++ +
Sbjct: 209 EVVARARALLQAM 221
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 742 | |||
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 100.0 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 99.97 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 99.97 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 99.96 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 99.96 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 99.96 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 99.96 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 99.96 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 99.96 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 99.96 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 99.96 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 99.96 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 99.94 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 99.94 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 99.94 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 99.93 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 99.93 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 99.93 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 99.93 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 99.91 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 99.9 | |
| d1ewqa1 | 275 | DNA repair protein MutS, domain III {Thermus aquat | 99.88 | |
| d1wb9a1 | 297 | DNA repair protein MutS, domain III {Escherichia c | 99.86 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.62 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.43 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.17 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 98.84 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.82 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.32 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 97.89 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 97.51 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 97.29 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 97.27 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 97.08 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.99 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 96.88 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 96.81 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 96.8 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 96.77 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 96.7 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 96.69 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 96.62 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 96.54 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 96.53 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 96.41 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 96.34 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 96.3 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.29 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 96.03 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 95.31 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.3 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 95.27 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 95.27 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 95.27 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 95.05 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 94.89 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 94.85 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 94.69 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 94.66 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 94.66 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 94.45 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 94.39 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 94.32 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 94.19 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 94.13 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 94.11 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 94.05 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 93.92 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 93.78 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 93.74 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 93.69 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 93.63 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 93.6 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 93.45 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 93.28 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 93.16 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 93.16 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 92.89 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 92.88 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 92.87 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 92.58 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 92.53 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 92.53 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 92.3 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 92.11 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 91.79 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 91.24 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 91.15 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 91.04 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 90.95 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 90.59 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 90.31 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 90.27 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 90.17 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 90.1 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 89.83 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 89.81 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 89.81 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 89.59 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 89.59 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 89.57 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 89.53 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 89.46 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 89.38 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 88.91 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 88.87 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 88.6 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 88.57 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 88.37 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 88.15 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 88.09 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 87.75 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 87.62 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 87.6 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 87.49 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 87.37 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 87.18 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 86.98 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 86.97 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 86.96 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 86.46 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 86.41 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 86.25 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 85.93 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 85.89 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 85.65 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 85.63 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 85.58 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 85.42 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 85.41 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 84.83 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 84.68 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 84.28 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 84.12 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 84.09 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 83.88 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 83.85 | |
| d1fx0a3 | 276 | Central domain of alpha subunit of F1 ATP synthase | 83.82 | |
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 83.56 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 83.48 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 83.24 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 83.2 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 83.07 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 83.01 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 82.66 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 82.16 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 81.98 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 81.95 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 81.84 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 81.68 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 81.6 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 81.53 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 81.07 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 80.86 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 80.73 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 80.37 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 80.33 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 80.28 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 80.14 |
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=333.36 Aligned_cols=227 Identities=29% Similarity=0.453 Sum_probs=204.1
Q ss_pred CCCEEECCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCEECCCCCCCCCCE
Q ss_conf 34001247998887622788064134212310000112468999887778988089800022119920015530027823
Q 004609 273 GVCPILSSQSHVSFDSSINIEGIKHPLLLGSSLRSLSAASSNSNPLKSDVENSEMTVGSLSKGISDFPVPIDIKVECETR 352 (742)
Q Consensus 273 ~~~P~~~~~~~~~~~~~i~l~~~rHPll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~y~~~~v~vsl~l~~g~~ 352 (742)
||+|.+++++ .+.++++||||++.. .. ..+||+|+.+.++.+
T Consensus 1 y~~P~~~~~~------~l~i~~~rHPlle~~-~~-------------------------------~~~VpNdi~l~~~~~ 42 (234)
T d1wb9a2 1 YTCPTFIDKP------GIRITEGRHPVVEQV-LN-------------------------------EPFIANPLNLSPQRR 42 (234)
T ss_dssp CBCCEECSSS------CEEEEEECCTTHHHH-CS-------------------------------SCCCCEEEEECSSSC
T ss_pred CCCCEECCCC------CEEEEEEECCEEECC-CC-------------------------------CCCCCEEEEECCCCE
T ss_conf 9787781899------689997378779744-69-------------------------------982640579889953
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHHCEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 99999079998104984487656544406233379999924999999982993000166254219999999999836999
Q 004609 353 VVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRE 432 (742)
Q Consensus 353 ~~~ItGpNg~GKSTlLK~iGLl~~la~~G~~vpa~~~~~i~~~d~il~~ig~~~~i~~~lStlSgg~krl~~i~~~~~~~ 432 (742)
+++|||||+|||||+||++|++++|||+|+|||+.. +.+++||+|++++++.|++..+.|+|+.++++++.++..++++
T Consensus 43 ~~iiTGpN~~GKSt~lk~i~l~~~laq~G~~VpA~~-a~~~~~d~I~~~~~~~d~~~~~~S~F~~E~~~~~~il~~~~~~ 121 (234)
T d1wb9a2 43 MLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQK-VEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEY 121 (234)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHTTTCCBSSSE-EEECCCCEEEEEEC-----------CHHHHHHHHHHHHHCCTT
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEECCC-EECCCCHHHEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf 999954673136899998799999987297674176-6613442023487467534365318999999999999745466
Q ss_pred CEEEECCCCCCCCHHHHHHHHHHHHHHHHCC-CCEEEEEECCHHHHHHCCCCCCEECCEEE--EECCCCCCCHHHHCCCC
Q ss_conf 3999807999999898999999999998338-94899992582365102545311064599--83485321012102788
Q 004609 433 SLVLIDEIGSGTDPSEGVALATSILQYLRDR-VGLAVVTTHYADLSCLKDKDTRFENAATE--FSLETLRPTYRILWGST 509 (742)
Q Consensus 433 ~LiLLDEp~~glDp~~g~aL~~all~~l~~~-~~~viitTH~~~l~~~a~~~~~i~~~~~~--~~~~~l~~~Y~l~~g~~ 509 (742)
+|||+||+++||+|.+|.+++.|+++++..+ ++.++++||++++..+......+.+.++. .+.+.+.++|++..|.+
T Consensus 122 sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l~~~~~~~~~v~~~~~~~~~~~~~i~f~YkL~~G~~ 201 (234)
T d1wb9a2 122 SLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDALEHGDTIAFMHSVQDGAA 201 (234)
T ss_dssp EEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHSTTEEEEEEEEEEETTEEEEEEEEEESCC
T ss_pred CEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHCCCCEEEEEEEEEECCCCCEEEEEECCCCC
T ss_conf 08853222358774566678987645432045442898524687764331245547899887603684017877467999
Q ss_pred CCCHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 99548899997799989999999999973
Q 004609 510 GDSNALNIAKSIGFDRKIIQRAQKLVERL 538 (742)
Q Consensus 510 ~~s~a~~ia~~~gl~~~vi~~A~~~~~~~ 538 (742)
+.|||+.+|+.+|+|++++++|+++...+
T Consensus 202 ~~s~ai~iA~~~Glp~~ii~~A~~i~~~l 230 (234)
T d1wb9a2 202 SKSYGLAVAALAGVPKEVIKRARQKLREL 230 (234)
T ss_dssp SSCCHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 97299999999196999999999999987
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=100.00 E-value=1.4e-45 Score=331.20 Aligned_cols=219 Identities=30% Similarity=0.492 Sum_probs=197.7
Q ss_pred CCCEEECCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCEECCCCCCCCCCE
Q ss_conf 34001247998887622788064134212310000112468999887778988089800022119920015530027823
Q 004609 273 GVCPILSSQSHVSFDSSINIEGIKHPLLLGSSLRSLSAASSNSNPLKSDVENSEMTVGSLSKGISDFPVPIDIKVECETR 352 (742)
Q Consensus 273 ~~~P~~~~~~~~~~~~~i~l~~~rHPll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~y~~~~v~vsl~l~~g~~ 352 (742)
||+|.+++. +.++++|||||+.. ..+||||+.+.. +
T Consensus 1 y~~P~~~~~--------~~i~~~rHPlle~~----------------------------------~~~VpNdi~~~~--~ 36 (224)
T d1ewqa2 1 YVRPRFGDR--------LQIRAGRHPVVERR----------------------------------TEFVPNDLEMAH--E 36 (224)
T ss_dssp CBCCEESSS--------EEEEEECCTTGGGT----------------------------------SCCCCEEEEESS--C
T ss_pred CCCCCCCCC--------EEEEECCCCEECCC----------------------------------CCEECCEEEECC--C
T ss_conf 978811782--------78985718879489----------------------------------975455588478--6
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHHCEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 99999079998104984487656544406233379999924999999982993000166254219999999999836999
Q 004609 353 VVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRE 432 (742)
Q Consensus 353 ~~~ItGpNg~GKSTlLK~iGLl~~la~~G~~vpa~~~~~i~~~d~il~~ig~~~~i~~~lStlSgg~krl~~i~~~~~~~ 432 (742)
+++|||||+|||||+||++|++++|||+|+|||++. +.+++||.|++++++.|++..+.|+|+.+++++..++..++++
T Consensus 37 ~~iiTGpN~~GKSt~lk~i~l~~ilAq~G~~vpA~~-~~i~~~d~I~~~~~~~d~~~~~~StF~~el~~~~~il~~~~~~ 115 (224)
T d1ewqa2 37 LVLITGPNMAGKSTFLRQTALIALLAQVGSFVPAEE-AHLPLFDGIYTRIGASDDLAGGKSTFMVEMEEVALILKEATEN 115 (224)
T ss_dssp EEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSSSE-EEECCCSEEEEECCC------CCSHHHHHHHHHHHHHHHCCTT
T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEECCC-EEEEECCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCC
T ss_conf 799978873453234556589999985250461375-1994011699998777602378307898678898775028977
Q ss_pred CEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCCCCCEECCEEE--EECCCCCCCHHHHCCCCC
Q ss_conf 399980799999989899999999999833894899992582365102545311064599--834853210121027889
Q 004609 433 SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATE--FSLETLRPTYRILWGSTG 510 (742)
Q Consensus 433 ~LiLLDEp~~glDp~~g~aL~~all~~l~~~~~~viitTH~~~l~~~a~~~~~i~~~~~~--~~~~~l~~~Y~l~~g~~~ 510 (742)
+|||+||+++||+|.+|.+++++++++|.+.+..++++||+.++..+.... +.+.++. .+.+.+.++|++..|.++
T Consensus 116 sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~eL~~l~~~~--~~~~~~~~~~~~~~~~f~Ykl~~G~~~ 193 (224)
T d1ewqa2 116 SLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTALGLPR--LKNLHVAAREEAGGLVFYHQVLPGPAS 193 (224)
T ss_dssp EEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHTCCCTT--EEEEEEEEECCSSSCEEEEEEEESCCS
T ss_pred CEEEECCCCCCCCHHHHCCHHHHHHHHHHHCCCCEEEEEECHHHHHHHHCC--CCEEEEEEEEECCCEEEEEEEEECCCC
T ss_conf 278554545686233200258888888862376137865202333221021--106999999817975898897237998
Q ss_pred CCHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 9548899997799989999999999973
Q 004609 511 DSNALNIAKSIGFDRKIIQRAQKLVERL 538 (742)
Q Consensus 511 ~s~a~~ia~~~gl~~~vi~~A~~~~~~~ 538 (742)
.|||+.+|+..|+|++++++|+++.+.+
T Consensus 194 ~s~ai~iA~~~Glp~~II~rA~~i~~~l 221 (224)
T d1ewqa2 194 KSYGVEVAAMAGLPKEVVARARALLQAM 221 (224)
T ss_dssp SCCHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 6399999999196999999999999998
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=99.97 E-value=1.4e-29 Score=218.83 Aligned_cols=169 Identities=21% Similarity=0.258 Sum_probs=142.3
Q ss_pred CCEEEEEEEEECCCCEE--CCCCCCCCCCEEEEEEECCCCCCCHHHHHH-HHHHH------------------HHHHCEE
Q ss_conf 80898000221199200--155300278239999907999810498448-76565------------------4440623
Q 004609 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL------------------MSKAGLY 383 (742)
Q Consensus 325 ~~l~~~~i~~~y~~~~v--~vsl~l~~g~~~~~ItGpNg~GKSTlLK~i-GLl~~------------------la~~G~~ 383 (742)
|.+.++|++++||++.+ ++||++.+| ++++|+||||+|||||||++ |++.+ +.+...|
T Consensus 1 gaI~v~nl~k~yg~~~vl~~vs~~v~~G-ei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~~i~~ 79 (238)
T d1vpla_ 1 GAVVVKDLRKRIGKKEILKGISFEIEEG-EIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISY 79 (238)
T ss_dssp CCEEEEEEEEEETTEEEEEEEEEEECTT-CEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEE
T ss_pred CCEEEEEEEEEECCEEEECCCEEEECCC-CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCHHHHHHHEEE
T ss_conf 9789995899999999980625688489-799999999999999999996698878887999867244683988721867
Q ss_pred ECCCCCC--CCHH---------------------HHHHHHHCCCCCCCCCCCCCCHHHHH-HHHHHHHHCCCCCEEEECC
Q ss_conf 3379999--9249---------------------99999982993000166254219999-9999998369993999807
Q 004609 384 LPAKNHP--RLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDE 439 (742)
Q Consensus 384 vpa~~~~--~i~~---------------------~d~il~~ig~~~~i~~~lStlSgg~k-rl~~i~~~~~~~~LiLLDE 439 (742)
+|+.... .+.. ++.++..++..+..++.+++||||++ |+.++++++++|+++||||
T Consensus 80 vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lSgG~~qrv~iA~al~~~p~illLDE 159 (238)
T d1vpla_ 80 LPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDE 159 (238)
T ss_dssp ECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEES
T ss_pred EEECCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEECC
T ss_conf 50015468786677888989986179989999999999986797888850453379989899999999865999887337
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHH-HHHHCCCCCCEECCEEEEEC
Q ss_conf 999999898999999999998338948999925823-65102545311064599834
Q 004609 440 IGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFSL 495 (742)
Q Consensus 440 p~~glDp~~g~aL~~all~~l~~~~~~viitTH~~~-l~~~a~~~~~i~~~~~~~~~ 495 (742)
||+|+||.....+.. ++..+.+.|.++|++||+.+ +..+|++...+.+|++.++.
T Consensus 160 Pt~gLD~~~~~~i~~-~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g 215 (238)
T d1vpla_ 160 PTSGLDVLNAREVRK-ILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETG 215 (238)
T ss_dssp TTTTCCHHHHHHHHH-HHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEE
T ss_pred CCCCCCHHHHHHHHH-HHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEC
T ss_conf 988979899999999-99999965998999959899999969999999899999992
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=9.6e-30 Score=219.98 Aligned_cols=167 Identities=19% Similarity=0.215 Sum_probs=142.6
Q ss_pred EEEEEEEEECCCCEE--CCCCCCCCCCEEEEEEECCCCCCCHHHHHH-HHHHH-----------------HHHHCEEECC
Q ss_conf 898000221199200--155300278239999907999810498448-76565-----------------4440623337
Q 004609 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-----------------MSKAGLYLPA 386 (742)
Q Consensus 327 l~~~~i~~~y~~~~v--~vsl~l~~g~~~~~ItGpNg~GKSTlLK~i-GLl~~-----------------la~~G~~vpa 386 (742)
++++||+++|++..+ ++||++++| ++++|+||||||||||||++ |+..+ ..+...|+||
T Consensus 1 Iev~nv~k~yg~~~~l~~isl~i~~G-ei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v~Q 79 (232)
T d2awna2 1 VQLQNVTKAWGEVVVSKDINLDIHEG-EFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQ 79 (232)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTT-CEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGGGTCEEEECS
T ss_pred CEEEEEEEEECCEEEEEEEEEEECCC-CEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHCEEEEECC
T ss_conf 99999999989999981117788699-89999989998299999999658788888899999977888644432223433
Q ss_pred CCCCCCHH------------------------HHHHHHHCCCCCCCCCCCCCCHHHHH-HHHHHHHHCCCCCEEEECCCC
Q ss_conf 99999249------------------------99999982993000166254219999-999999836999399980799
Q 004609 387 KNHPRLPW------------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIG 441 (742)
Q Consensus 387 ~~~~~i~~------------------------~d~il~~ig~~~~i~~~lStlSgg~k-rl~~i~~~~~~~~LiLLDEp~ 441 (742)
.. .-++. ++.++..++..+..++.+++|||||+ |++++++++.+|.++||||||
T Consensus 80 ~~-~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSGGqkQRvaiAraL~~~P~illlDEPt 158 (232)
T d2awna2 80 SY-ALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPL 158 (232)
T ss_dssp SC-CC---------------------CHHHHHHHHHHHHC---------------------CHHHHHHTCCSEEEEESTT
T ss_pred CC-CCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf 42-02643337889789998759988999999999997578865664896569999999999999970399889975888
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHH-HHHHCCCCCCEECCEEEEEC
Q ss_conf 9999898999999999998338948999925823-65102545311064599834
Q 004609 442 SGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFSL 495 (742)
Q Consensus 442 ~glDp~~g~aL~~all~~l~~~~~~viitTH~~~-l~~~a~~~~~i~~~~~~~~~ 495 (742)
+|+||.....+...+.+...+.+.|+|++||+.+ ...+++++..+.+|.+..+.
T Consensus 159 s~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G 213 (232)
T d2awna2 159 SNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVG 213 (232)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEE
T ss_conf 7889889989999999998742987999948999999969999999799999980
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=99.96 E-value=3.7e-29 Score=215.91 Aligned_cols=169 Identities=15% Similarity=0.163 Sum_probs=141.7
Q ss_pred CEEEEEEEEECCCCEE--CCCCCCCCCCEEEEEEECCCCCCCHHHHHH-HHHHHH-----------------------HH
Q ss_conf 0898000221199200--155300278239999907999810498448-765654-----------------------44
Q 004609 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------------SK 379 (742)
Q Consensus 326 ~l~~~~i~~~y~~~~v--~vsl~l~~g~~~~~ItGpNg~GKSTlLK~i-GLl~~l-----------------------a~ 379 (742)
.++++||++.||+..+ ++||++++| ++++|+|||||||||+||++ |++.+- .+
T Consensus 3 ~i~v~nl~k~yg~~~al~~vsl~i~~G-e~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~~r 81 (240)
T d1g2912 3 GVRLVDVWKVFGEVTAVREMSLEVKDG-EFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDR 81 (240)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETT-CEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGS
T ss_pred CEEEEEEEEEECCEEEECCEEEEECCC-CEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEECCCCHHHHCCCCCC
T ss_conf 189986999989999985606688699-8999999999809999999964878898989999998035664442453225
Q ss_pred HCEEECCCCCC--CCHH---------------------HHHHHHHCCCCCCCCCCCCCCHHHHH-HHHHHHHHCCCCCEE
Q ss_conf 06233379999--9249---------------------99999982993000166254219999-999999836999399
Q 004609 380 AGLYLPAKNHP--RLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLV 435 (742)
Q Consensus 380 ~G~~vpa~~~~--~i~~---------------------~d~il~~ig~~~~i~~~lStlSgg~k-rl~~i~~~~~~~~Li 435 (742)
...++||.... .+.+ +..++..++..+..++.+++|||||+ |++.+++++.+|+++
T Consensus 82 ~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~~~p~~LSGGqkQRv~IAraL~~~P~iL 161 (240)
T d1g2912 82 DIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVF 161 (240)
T ss_dssp SEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEE
T ss_pred CCEECCCCHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHCCCHHHCCHHHHHHHHHHHHHHCCCCEE
T ss_conf 51200221222310116676330687729998999999999998759966762993349999999999999982699889
Q ss_pred EECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHH-HHHHCCCCCCEECCEEEEEC
Q ss_conf 9807999999898999999999998338948999925823-65102545311064599834
Q 004609 436 LIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFSL 495 (742)
Q Consensus 436 LLDEp~~glDp~~g~aL~~all~~l~~~~~~viitTH~~~-l~~~a~~~~~i~~~~~~~~~ 495 (742)
|+||||+|+||.....+...+.+...+.|.|+|++|||.+ ...+++++..+.+|.+....
T Consensus 162 llDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G 222 (240)
T d1g2912 162 LMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVG 222 (240)
T ss_dssp EEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEE
T ss_pred EECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEEC
T ss_conf 8258876569899989999999998636988999959999999969999999899999985
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=99.96 E-value=5.5e-29 Score=214.72 Aligned_cols=168 Identities=20% Similarity=0.194 Sum_probs=140.9
Q ss_pred EEEEEEEEECCCCEE-CCCCCCCCCCEEEEEEECCCCCCCHHHHHH-HHHHH-----------------HHHHCEEECCC
Q ss_conf 898000221199200-155300278239999907999810498448-76565-----------------44406233379
Q 004609 327 MTVGSLSKGISDFPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-----------------MSKAGLYLPAK 387 (742)
Q Consensus 327 l~~~~i~~~y~~~~v-~vsl~l~~g~~~~~ItGpNg~GKSTlLK~i-GLl~~-----------------la~~G~~vpa~ 387 (742)
++++|++++|++..+ ++||++++| ++++|+|||||||||++|++ |+..+ ..+...|+|+.
T Consensus 2 i~v~nlsk~y~~~aL~~vs~~i~~G-e~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~~r~ig~v~Q~ 80 (229)
T d3d31a2 2 IEIESLSRKWKNFSLDNLSLKVESG-EYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQN 80 (229)
T ss_dssp EEEEEEEEECSSCEEEEEEEEECTT-CEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTT
T ss_pred EEEEEEEEEECCEEEEEEEEEECCC-CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHCCEEECCC
T ss_conf 8999899994997884337898799-899999899982999999996476888788999567346521657405615121
Q ss_pred CCC--CCHH------------------HHHHHHHCCCCCCCCCCCCCCHHHHH-HHHHHHHHCCCCCEEEECCCCCCCCH
Q ss_conf 999--9249------------------99999982993000166254219999-99999983699939998079999998
Q 004609 388 NHP--RLPW------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDP 446 (742)
Q Consensus 388 ~~~--~i~~------------------~d~il~~ig~~~~i~~~lStlSgg~k-rl~~i~~~~~~~~LiLLDEp~~glDp 446 (742)
... .+.+ .++++..++..+..++.+++||||++ |++.+++++++|.++||||||+|+||
T Consensus 81 ~~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGG~~QRvaiAraL~~~P~iLllDEPts~LD~ 160 (229)
T d3d31a2 81 YSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDP 160 (229)
T ss_dssp CCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCH
T ss_pred CCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHCCHHHCCHHHHCCHHHHHHHHCCCCCEEECCCCCCCCH
T ss_conf 11174665778888877640553899999999982565557589554799984014030434436771443478767998
Q ss_pred HHHHHHHHHHHHHHHCCCCEEEEEECCHH-HHHHCCCCCCEECCEEEEEC
Q ss_conf 98999999999998338948999925823-65102545311064599834
Q 004609 447 SEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFSL 495 (742)
Q Consensus 447 ~~g~aL~~all~~l~~~~~~viitTH~~~-l~~~a~~~~~i~~~~~~~~~ 495 (742)
.....+...+.+...+.+.|+|++||+.+ ...++++...+.+|.+.++.
T Consensus 161 ~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g 210 (229)
T d3d31a2 161 RTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVG 210 (229)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEE
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEEC
T ss_conf 99999999999998647968999749999999969999999799999986
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.96 E-value=1.4e-29 Score=218.91 Aligned_cols=169 Identities=17% Similarity=0.193 Sum_probs=141.5
Q ss_pred CEEEEEEEEECCCCEE--CCCCCCCCCCEEEEEEECCCCCCCHHHHHH-HHHHH-----------------HHHHCEEEC
Q ss_conf 0898000221199200--155300278239999907999810498448-76565-----------------444062333
Q 004609 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-----------------MSKAGLYLP 385 (742)
Q Consensus 326 ~l~~~~i~~~y~~~~v--~vsl~l~~g~~~~~ItGpNg~GKSTlLK~i-GLl~~-----------------la~~G~~vp 385 (742)
.++++|++++||+..+ ++||++++| ++++|+||||||||||+|++ |++.+ -.+...|+|
T Consensus 6 ~I~v~nlsk~yg~~~al~~vsl~v~~G-e~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v~ 84 (239)
T d1v43a3 6 EVKLENLTKRFGNFTAVNKLNLTIKDG-EFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVF 84 (239)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTT-CEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEE
T ss_pred EEEEEEEEEEECCEEEECCEEEEECCC-CEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCCCCCEEEEEE
T ss_conf 499987999999999981306788799-8999999999829999999975899987879991641354770001589980
Q ss_pred CCCCC--CCHH---------------------HHHHHHHCCCCCCCCCCCCCCHHHHH-HHHHHHHHCCCCCEEEECCCC
Q ss_conf 79999--9249---------------------99999982993000166254219999-999999836999399980799
Q 004609 386 AKNHP--RLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIG 441 (742)
Q Consensus 386 a~~~~--~i~~---------------------~d~il~~ig~~~~i~~~lStlSgg~k-rl~~i~~~~~~~~LiLLDEp~ 441 (742)
|.... .+.+ ++.++..+|..+..++.+++||||++ |++++++++.+|+++||||||
T Consensus 85 Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRvaiAraL~~~P~iLllDEPt 164 (239)
T d1v43a3 85 QSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPL 164 (239)
T ss_dssp C------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTT
T ss_pred ECHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHCCCHHHCCHHHHHHHHHHHHHCCCCCCEEECCCC
T ss_conf 03353422209999999998739999999999999998759855660995469999988999976640499824306886
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHH-HHHHCCCCCCEECCEEEEEC
Q ss_conf 9999898999999999998338948999925823-65102545311064599834
Q 004609 442 SGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFSL 495 (742)
Q Consensus 442 ~glDp~~g~aL~~all~~l~~~~~~viitTH~~~-l~~~a~~~~~i~~~~~~~~~ 495 (742)
+|+||..+..+...+.+...+.+.|+|++|||.+ ...+++++..+.+|.+..+.
T Consensus 165 s~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G 219 (239)
T d1v43a3 165 SNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIG 219 (239)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEC
T ss_conf 6689899989999999998731980799948999999869999999899999985
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=99.96 E-value=3e-29 Score=216.54 Aligned_cols=168 Identities=21% Similarity=0.258 Sum_probs=139.2
Q ss_pred CEEEEEEEEECCCCEE--CCCCCCCCCCEEEEEEECCCCCCCHHHHHH-HHHHH-------------------HHHHC-E
Q ss_conf 0898000221199200--155300278239999907999810498448-76565-------------------44406-2
Q 004609 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKAG-L 382 (742)
Q Consensus 326 ~l~~~~i~~~y~~~~v--~vsl~l~~g~~~~~ItGpNg~GKSTlLK~i-GLl~~-------------------la~~G-~ 382 (742)
.++++|++++||+..+ ++||++++| ++++|+||||+||||++|++ |++.+ .++.| .
T Consensus 6 ~Lev~~l~k~yg~~~al~~vs~~i~~G-ei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~gi~ 84 (240)
T d1ji0a_ 6 VLEVQSLHVYYGAIHAIKGIDLKVPRG-QIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIA 84 (240)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETT-CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEE
T ss_pred EEEEEEEEEEECCEEEEEEEEEEECCC-CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHHCCC
T ss_conf 799961899989988883025788899-7999999999859999999967888880389842443446608888874235
Q ss_pred EECCCCC--CCCHHHHHH--------------------HHHC-CCCCCCCCCCCCCHHHHH-HHHHHHHHCCCCCEEEEC
Q ss_conf 3337999--992499999--------------------9982-993000166254219999-999999836999399980
Q 004609 383 YLPAKNH--PRLPWFDLI--------------------LADI-GDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLID 438 (742)
Q Consensus 383 ~vpa~~~--~~i~~~d~i--------------------l~~i-g~~~~i~~~lStlSgg~k-rl~~i~~~~~~~~LiLLD 438 (742)
|+|+... ..+.+++++ +..+ +..+..++..++||||++ |+..+++++.+|.++|||
T Consensus 85 ~~~q~~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSGG~~Qrv~iAraL~~~P~lLllD 164 (240)
T d1ji0a_ 85 LVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMD 164 (240)
T ss_dssp EECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCHHHHHHCCHHHCCHHHHHHHHHHHHHHHCCCEEEEC
T ss_conf 56765545776369999998887327888999999999987417688875854338999999999999998299874003
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHH-HHHHCCCCCCEECCEEEEEC
Q ss_conf 7999999898999999999998338948999925823-65102545311064599834
Q 004609 439 EIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFSL 495 (742)
Q Consensus 439 Ep~~glDp~~g~aL~~all~~l~~~~~~viitTH~~~-l~~~a~~~~~i~~~~~~~~~ 495 (742)
|||+|+||.....+.. ++..+++.|.+++++||+.+ +..++++...+.+|.+.++.
T Consensus 165 EPt~gLD~~~~~~i~~-~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv~~g 221 (240)
T d1ji0a_ 165 EPSLGLAPILVSEVFE-VIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEG 221 (240)
T ss_dssp CTTTTCCHHHHHHHHH-HHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEE
T ss_pred CCCCCCCHHHHHHHHH-HHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEC
T ss_conf 9886799999999999-99999968998999958899999969999999899999984
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.96 E-value=8.6e-29 Score=213.38 Aligned_cols=167 Identities=17% Similarity=0.205 Sum_probs=139.0
Q ss_pred CEEEEEEEEECCCCEE--CCCCCCCCCCEEEEEEECCCCCCCHHHHHH-HHHHH-------------------HHHHC-E
Q ss_conf 0898000221199200--155300278239999907999810498448-76565-------------------44406-2
Q 004609 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKAG-L 382 (742)
Q Consensus 326 ~l~~~~i~~~y~~~~v--~vsl~l~~g~~~~~ItGpNg~GKSTlLK~i-GLl~~-------------------la~~G-~ 382 (742)
.++++|++++||+..+ ++||++.+| ++++|+||||+|||||+|++ |++.+ .++.| .
T Consensus 4 iL~v~nlsk~yg~~~aL~~vs~~v~~G-ei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~gi~ 82 (254)
T d1g6ha_ 4 ILRTENIVKYFGEFKALDGVSISVNKG-DVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIV 82 (254)
T ss_dssp EEEEEEEEEEETTEEEEEEECCEEETT-CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEE
T ss_pred EEEEEEEEEEECCEEEECCEEEEECCC-CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCHHHHHHHHHCCC
T ss_conf 699977899979968871217998899-7999999999849999999977976887379999996640569999983387
Q ss_pred EECCCCCC--CCHHHH----------------------------------HHHHHCCCCCCCCCCCCCCHHHHH-HHHHH
Q ss_conf 33379999--924999----------------------------------999982993000166254219999-99999
Q 004609 383 YLPAKNHP--RLPWFD----------------------------------LILADIGDHQSLEQNLSTFSGHIS-RIVDI 425 (742)
Q Consensus 383 ~vpa~~~~--~i~~~d----------------------------------~il~~ig~~~~i~~~lStlSgg~k-rl~~i 425 (742)
++|+.... .+++++ .++..++..+..++.+++||||++ |+..+
T Consensus 83 ~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~Qrv~iA 162 (254)
T d1g6ha_ 83 RTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIG 162 (254)
T ss_dssp ECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHH
T ss_pred CCCCCCCCCCCCEEEEEEEEHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHCCCCHHHCCCHHHHHHHHH
T ss_conf 25776424788742321430133303450456654213532899999999998761963020595356991888899999
Q ss_pred HHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHH-HHHHCCCCCCEECCEEEEE
Q ss_conf 98369993999807999999898999999999998338948999925823-6510254531106459983
Q 004609 426 LELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 426 ~~~~~~~~LiLLDEp~~glDp~~g~aL~~all~~l~~~~~~viitTH~~~-l~~~a~~~~~i~~~~~~~~ 494 (742)
++++.+|.++||||||+|+||.....+.. ++..+++.|.+++++||+.+ +..+++++..+.+|.+..+
T Consensus 163 raL~~~P~llilDEPt~gLD~~~~~~i~~-~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~G~iv~~ 231 (254)
T d1g6ha_ 163 RALMTNPKMIVMDEPIAGVAPGLAHDIFN-HVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAE 231 (254)
T ss_dssp HHHHTCCSEEEEESTTTTCCHHHHHHHHH-HHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEE
T ss_pred HHHHHCCCCHHHCCCCCCCCHHHHHHHHH-HHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEE
T ss_conf 99975927232439765699999999999-9999997899899994769999986999999969989999
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=99.96 E-value=3.2e-28 Score=209.50 Aligned_cols=168 Identities=18% Similarity=0.181 Sum_probs=137.9
Q ss_pred CEEEEEEEEECCCCEE--CCCCCCCCCCEEEEEEECCCCCCCHHHHHH-HHHHH--------------------------
Q ss_conf 0898000221199200--155300278239999907999810498448-76565--------------------------
Q 004609 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------------- 376 (742)
Q Consensus 326 ~l~~~~i~~~y~~~~v--~vsl~l~~g~~~~~ItGpNg~GKSTlLK~i-GLl~~-------------------------- 376 (742)
.++++|++++||+..+ ++||++.+| ++++|+||||||||||+|++ |+..+
T Consensus 2 ~Lev~nl~k~yg~~~al~~vs~~i~~G-Ei~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~~ 80 (258)
T d1b0ua_ 2 KLHVIDLHKRYGGHEVLKGVSLQARAG-DVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVAD 80 (258)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTT-CEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESC
T ss_pred EEEEEEEEEEECCEEEECCEEEEECCC-CEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEECCEEECCCCCCCHHCCCCC
T ss_conf 699997899989999881506688699-7999998999829999999974766789977999999336775200002351
Q ss_pred ------HHHHCEEECCCCCC--CCHHHH----------------------HHHHHCCCCCCC-CCCCCCCHHHHH-HHHH
Q ss_conf ------44406233379999--924999----------------------999982993000-166254219999-9999
Q 004609 377 ------MSKAGLYLPAKNHP--RLPWFD----------------------LILADIGDHQSL-EQNLSTFSGHIS-RIVD 424 (742)
Q Consensus 377 ------la~~G~~vpa~~~~--~i~~~d----------------------~il~~ig~~~~i-~~~lStlSgg~k-rl~~ 424 (742)
+.+...+|||.... .+.+++ .++..++..+.. ++.+++||||++ |++.
T Consensus 81 ~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p~~LSGG~~QRv~i 160 (258)
T d1b0ua_ 81 KNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSI 160 (258)
T ss_dssp HHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHH
T ss_pred HHHHHHHHCCEEEEEECHHHCCCHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCHHHHHHHHH
T ss_conf 76799974544899833231411010213656578762999899999999999982995244306822056778889899
Q ss_pred HHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHH-HHHHCCCCCCEECCEEEEEC
Q ss_conf 998369993999807999999898999999999998338948999925823-65102545311064599834
Q 004609 425 ILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFSL 495 (742)
Q Consensus 425 i~~~~~~~~LiLLDEp~~glDp~~g~aL~~all~~l~~~~~~viitTH~~~-l~~~a~~~~~i~~~~~~~~~ 495 (742)
+++++.+|.++|+||||+|+||.....+.. ++..+++.|.++|++|||.+ +..+|+++..+.+|.+..+.
T Consensus 161 AraL~~~P~llilDEPT~gLD~~~~~~i~~-ll~~l~~~g~til~vtHdl~~~~~~adri~vm~~G~iv~~g 231 (258)
T d1b0ua_ 161 ARALAMEPDVLLFDEPTSALDPELVGEVLR-IMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEG 231 (258)
T ss_dssp HHHHHTCCSEEEEESTTTTSCHHHHHHHHH-HHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEEE
T ss_pred HHHHHCCCCEEEECCCCCCCCHHHHHHHHH-HHHHHCCCCCCEEEEECCHHHHHHHCCEEEEEECCEEEEEC
T ss_conf 999843998788524555688788889987-65541036883389948999999869999999799999984
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=99.96 E-value=2e-28 Score=210.86 Aligned_cols=168 Identities=15% Similarity=0.129 Sum_probs=139.0
Q ss_pred EEEEEEEEECCCC-----EE-CCCCCCCCCCEEEEEEECCCCCCCHHHHHH-HHHHH----------------------H
Q ss_conf 8980002211992-----00-155300278239999907999810498448-76565----------------------4
Q 004609 327 MTVGSLSKGISDF-----PV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL----------------------M 377 (742)
Q Consensus 327 l~~~~i~~~y~~~-----~v-~vsl~l~~g~~~~~ItGpNg~GKSTlLK~i-GLl~~----------------------l 377 (742)
++++|+++.|+.. .+ ++||++.+| ++++|+|||||||||+||++ |+..+ +
T Consensus 2 i~v~nlsk~y~~~~~~~~al~~vsl~i~~G-e~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~ 80 (240)
T d3dhwc1 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAG-QIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 80 (240)
T ss_dssp EEEEEEEEEEECSSCEEEEEEEEEEEECSS-CEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHH
T ss_pred EEEEEEEEEECCCCEEEEEEECEEEEECCC-CEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEECCEEEEECCHHHHHHH
T ss_conf 799827999699981489861505788699-7999989998988899998758863667732886768520875551155
Q ss_pred HHHCEEECCCCCC--CCHH---------------------HHHHHHHCCCCCCCCCCCCCCHHHHH-HHHHHHHHCCCCC
Q ss_conf 4406233379999--9249---------------------99999982993000166254219999-9999998369993
Q 004609 378 SKAGLYLPAKNHP--RLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRES 433 (742)
Q Consensus 378 a~~G~~vpa~~~~--~i~~---------------------~d~il~~ig~~~~i~~~lStlSgg~k-rl~~i~~~~~~~~ 433 (742)
.+...+|||+... .+.+ +..++..+|..+..++.+..|||||+ |++.+++++.+|.
T Consensus 81 rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~~~~~~~LSGG~~QRvaiAraL~~~P~ 160 (240)
T d3dhwc1 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPK 160 (240)
T ss_dssp HHHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTTSSCBSCCCHHHHHHHHHHHHHHTCCS
T ss_pred HCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHCCHHHCCHHHHHHHHHHHHHCCCCC
T ss_conf 41664302252227996499999999998499989999999999997699035548943499999989998640105898
Q ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHH-HHHHCCCCCCEECCEEEEEC
Q ss_conf 999807999999898999999999998338948999925823-65102545311064599834
Q 004609 434 LVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFSL 495 (742)
Q Consensus 434 LiLLDEp~~glDp~~g~aL~~all~~l~~~~~~viitTH~~~-l~~~a~~~~~i~~~~~~~~~ 495 (742)
++|+||||+|+||.....+...+.+...+.+.|+|++|||.+ ...+++++..+.+|.+..+.
T Consensus 161 lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G 223 (240)
T d3dhwc1 161 VLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQD 223 (240)
T ss_dssp EEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEE
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEEC
T ss_conf 687446556589888567999999998646978999838999999869999999799999987
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.96 E-value=2e-28 Score=210.82 Aligned_cols=168 Identities=14% Similarity=0.191 Sum_probs=135.8
Q ss_pred EEEEEEEEECCCC-----EE-CCCCCCCCCCEEEEEEECCCCCCCHHHHHH-HHHHH-------------------H---
Q ss_conf 8980002211992-----00-155300278239999907999810498448-76565-------------------4---
Q 004609 327 MTVGSLSKGISDF-----PV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------M--- 377 (742)
Q Consensus 327 l~~~~i~~~y~~~-----~v-~vsl~l~~g~~~~~ItGpNg~GKSTlLK~i-GLl~~-------------------l--- 377 (742)
++++||++.|+.. .+ ++||++++| ++++|+|||||||||||+++ |+..+ +
T Consensus 2 I~i~nlsk~y~~~~~~~~al~~isl~i~~G-e~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~ 80 (230)
T d1l2ta_ 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEG-EFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80 (230)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTT-CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred EEEEEEEEEECCCCEEEEEEECEEEEECCC-CEEEEECCCCCCCCHHHHHCCCCCCCCCCEEEECCEECCCCCHHHCCHH
T ss_conf 899907999489982089871337788499-7999988999982165575068877776626999998576885551231
Q ss_pred -HHHCEEECCCCC--CCCHHHH------------------------HHHHHCCCCC-CCCCCCCCCHHHHH-HHHHHHHH
Q ss_conf -440623337999--9924999------------------------9999829930-00166254219999-99999983
Q 004609 378 -SKAGLYLPAKNH--PRLPWFD------------------------LILADIGDHQ-SLEQNLSTFSGHIS-RIVDILEL 428 (742)
Q Consensus 378 -a~~G~~vpa~~~--~~i~~~d------------------------~il~~ig~~~-~i~~~lStlSgg~k-rl~~i~~~ 428 (742)
.+...++||... ..+.+++ .++..++..+ ..++.++.|||||+ |++.++++
T Consensus 81 r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p~~LSGGqkQRvaIAraL 160 (230)
T d1l2ta_ 81 RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARAL 160 (230)
T ss_dssp HHHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHH
T ss_pred HCCEEEEEECCHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCHHHHHHCCCHHHCCHHHHHHHHHHHHH
T ss_conf 25557788041241768668887757888722478999999999999887624234553488023899999999987565
Q ss_pred CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCCCCCEECCEEEEEC
Q ss_conf 6999399980799999989899999999999833894899992582365102545311064599834
Q 004609 429 VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFSL 495 (742)
Q Consensus 429 ~~~~~LiLLDEp~~glDp~~g~aL~~all~~l~~~~~~viitTH~~~l~~~a~~~~~i~~~~~~~~~ 495 (742)
+.+|.++|+||||+++||..+..+...+.+...+.+.|+|++||+.++..+++++..+.+|.+..+.
T Consensus 161 ~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~drv~~m~~G~Iv~~g 227 (230)
T d1l2ta_ 161 ANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREE 227 (230)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHHTTSSEEEEEETTEEEEEE
T ss_pred HCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHCCEEEEEECCEEEEEC
T ss_conf 2278889946876546989999999999999984399999987888999869989999899999952
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=99.96 E-value=1.6e-28 Score=211.58 Aligned_cols=169 Identities=20% Similarity=0.154 Sum_probs=140.1
Q ss_pred CEEEEEEEEEC--CCCEE--CCCCCCCCCCEEEEEEECCCCCCCHHHHHH-HHHHH----------------------HH
Q ss_conf 08980002211--99200--155300278239999907999810498448-76565----------------------44
Q 004609 326 EMTVGSLSKGI--SDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL----------------------MS 378 (742)
Q Consensus 326 ~l~~~~i~~~y--~~~~v--~vsl~l~~g~~~~~ItGpNg~GKSTlLK~i-GLl~~----------------------la 378 (742)
.++++|+++.| |+..+ ++||++.+| ++++|+|||||||||+|+++ |+..+ ..
T Consensus 3 ~i~v~nlsk~y~~g~~~aL~~vsl~i~~G-e~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~r 81 (242)
T d1oxxk2 3 RIIVKNVSKVFKKGKVVALDNVNINIENG-ERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPED 81 (242)
T ss_dssp CEEEEEEEEEEGGGTEEEEEEEEEEECTT-CEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGG
T ss_pred EEEEEEEEEEECCCCEEEEECEEEEECCC-CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEECCCHHHCCHHH
T ss_conf 89997579998899989980407898799-89999989998099999999758688874599999995137311153120
Q ss_pred HHCEEECCCCCC--CCHHH---------------------HHHHHHCCCCCCCCCCCCCCHHHHH-HHHHHHHHCCCCCE
Q ss_conf 406233379999--92499---------------------9999982993000166254219999-99999983699939
Q 004609 379 KAGLYLPAKNHP--RLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESL 434 (742)
Q Consensus 379 ~~G~~vpa~~~~--~i~~~---------------------d~il~~ig~~~~i~~~lStlSgg~k-rl~~i~~~~~~~~L 434 (742)
+...+|||.... .+.++ ..++..+|..+..++.++.||||++ |++.+++++.+|.+
T Consensus 82 r~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~p~~LSGGqkQRvaiARaL~~~P~l 161 (242)
T d1oxxk2 82 RKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSL 161 (242)
T ss_dssp SCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSE
T ss_pred CCCEEEECCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHCCHHHCCHHHHHHHHHHHHHHHCCCC
T ss_conf 45147730433466665777766556761379999999999998665917666489545999998589987577604661
Q ss_pred EEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHH-HHHHCCCCCCEECCEEEEEC
Q ss_conf 99807999999898999999999998338948999925823-65102545311064599834
Q 004609 435 VLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFSL 495 (742)
Q Consensus 435 iLLDEp~~glDp~~g~aL~~all~~l~~~~~~viitTH~~~-l~~~a~~~~~i~~~~~~~~~ 495 (742)
+|+||||+|+||.....+...+.+...+.+.|+|++|||.+ ...+++++..+.+|.+....
T Consensus 162 lllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g 223 (242)
T d1oxxk2 162 LLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVG 223 (242)
T ss_dssp EEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEE
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEC
T ss_conf 45447866799899889989999998635987999979999999969999999899999986
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=4.3e-27 Score=201.66 Aligned_cols=169 Identities=14% Similarity=0.149 Sum_probs=132.2
Q ss_pred CCEEEEEEEEECCCC---EE--CCCCCCCCCCEEEEEEECCCCCCCHHHHHH-HHHHH-------------------HHH
Q ss_conf 808980002211992---00--155300278239999907999810498448-76565-------------------444
Q 004609 325 SEMTVGSLSKGISDF---PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSK 379 (742)
Q Consensus 325 ~~l~~~~i~~~y~~~---~v--~vsl~l~~g~~~~~ItGpNg~GKSTlLK~i-GLl~~-------------------la~ 379 (742)
|.++++||+++|++. .+ ++||++++| ++++|+||||||||||+|++ |++.+ +.+
T Consensus 10 g~I~~~nvsf~Y~~~~~~~vL~~isl~i~~G-e~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~r~ 88 (251)
T d1jj7a_ 10 GLVQFQDVSFAYPNRPDVLVLQGLTFTLRPG-EVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLHR 88 (251)
T ss_dssp CCEEEEEEEECCTTSTTCCSEEEEEEEECTT-CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHH
T ss_pred CEEEEEEEEEECCCCCCCEEEECEEEEECCC-CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCHHHHHHHHH
T ss_conf 3699999899889999997674438998499-899999999984999999986143787689988998531101378887
Q ss_pred HCEEECCCCCCC-CHHHHHHH-------------------------HHC--CCCCCCCCCCCCCHHHHH-HHHHHHHHCC
Q ss_conf 062333799999-24999999-------------------------982--993000166254219999-9999998369
Q 004609 380 AGLYLPAKNHPR-LPWFDLIL-------------------------ADI--GDHQSLEQNLSTFSGHIS-RIVDILELVS 430 (742)
Q Consensus 380 ~G~~vpa~~~~~-i~~~d~il-------------------------~~i--g~~~~i~~~lStlSgg~k-rl~~i~~~~~ 430 (742)
...+||+.+... .++.+++. ..+ |....+....+.||||++ |++++++++.
T Consensus 89 ~i~~v~Q~~~lf~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal~~ 168 (251)
T d1jj7a_ 89 QVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIR 168 (251)
T ss_dssp HEEEECSSCCCCSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHHTT
T ss_pred HHHHCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHHCEEEEEEECCCC
T ss_conf 76540456500276346554542101302788999999998999998561211136751676689547048998604456
Q ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCCCCCEECCEEEEE
Q ss_conf 9939998079999998989999999999983389489999258236510254531106459983
Q 004609 431 RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 431 ~~~LiLLDEp~~glDp~~g~aL~~all~~l~~~~~~viitTH~~~l~~~a~~~~~i~~~~~~~~ 494 (742)
+|+++||||||+++|+.....+...+.+...+.+.|+|++||+.+....++++..+.+|.+..+
T Consensus 169 ~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~~aDrI~vl~~G~iv~~ 232 (251)
T d1jj7a_ 169 KPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREG 232 (251)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHHHTCSEEEEEETTEEEEE
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEE
T ss_conf 8707871675765685368999999999765069899999597999985999999989999998
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.94 E-value=8.5e-27 Score=199.59 Aligned_cols=164 Identities=20% Similarity=0.244 Sum_probs=134.5
Q ss_pred EEEEEEEECCCCEECCCCCCCCCCEEEEEEECCCCCCCHHHHHH-HHHHHH-----------------HHHCEEECCCCC
Q ss_conf 98000221199200155300278239999907999810498448-765654-----------------440623337999
Q 004609 328 TVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------SKAGLYLPAKNH 389 (742)
Q Consensus 328 ~~~~i~~~y~~~~v~vsl~l~~g~~~~~ItGpNg~GKSTlLK~i-GLl~~l-----------------a~~G~~vpa~~~ 389 (742)
++ ++.+.||+..+++||+++ + ++++|+|||||||||+||++ |++.+- .+...|+||...
T Consensus 4 ~v-~~~k~~g~~~~~vs~~~~-~-e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~ 80 (240)
T d2onka1 4 KV-RAEKRLGNFRLNVDFEMG-R-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYA 80 (240)
T ss_dssp EE-EEEEEETTEEEEEEEEEC-S-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCC
T ss_pred EE-EEEEEECCEEEEEEEEEC-C-EEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHCCCEEECCCHH
T ss_conf 99-999998999999999749-9-79999979998099999999739998962899999998869989928522523144
Q ss_pred --CCCHHH-------------------HHHHHHCCCCCCCCCCCCCCHHHHH-HHHHHHHHCCCCCEEEECCCCCCCCHH
Q ss_conf --992499-------------------9999982993000166254219999-999999836999399980799999989
Q 004609 390 --PRLPWF-------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPS 447 (742)
Q Consensus 390 --~~i~~~-------------------d~il~~ig~~~~i~~~lStlSgg~k-rl~~i~~~~~~~~LiLLDEp~~glDp~ 447 (742)
..++++ .+++..+|..+..++.+++||||++ |++.+++++.+|.++||||||+|+||.
T Consensus 81 l~~~ltV~enl~~~l~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~ 160 (240)
T d2onka1 81 LFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLK 160 (240)
T ss_dssp CCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHH
T ss_pred HCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCHHHCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCCHH
T ss_conf 35220155766653233677889999999998638375665794448999989999987775167706752865558879
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEEECCHH-HHHHCCCCCCEECCEEEEE
Q ss_conf 8999999999998338948999925823-6510254531106459983
Q 004609 448 EGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 448 ~g~aL~~all~~l~~~~~~viitTH~~~-l~~~a~~~~~i~~~~~~~~ 494 (742)
....+...+.+...+.+.++|++||+.+ ...+++++..+.+|.+...
T Consensus 161 ~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~ 208 (240)
T d2onka1 161 TKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEK 208 (240)
T ss_dssp HHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEE
T ss_conf 999999999999874397699981899999996999999989999999
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.94 E-value=2.5e-26 Score=196.36 Aligned_cols=168 Identities=15% Similarity=0.174 Sum_probs=129.9
Q ss_pred CCCEEEEEEEEECCCC--EE--CCCCCCCCCCEEEEEEECCCCCCCHHHHHH-HHHHH-------------------HHH
Q ss_conf 8808980002211992--00--155300278239999907999810498448-76565-------------------444
Q 004609 324 NSEMTVGSLSKGISDF--PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSK 379 (742)
Q Consensus 324 ~~~l~~~~i~~~y~~~--~v--~vsl~l~~g~~~~~ItGpNg~GKSTlLK~i-GLl~~-------------------la~ 379 (742)
.|.++++||+++|++. ++ ++||++++| ++++|+||||||||||++++ |++.+ +.+
T Consensus 11 ~g~I~~~nvsf~Y~~~~~~~L~~isl~i~~G-e~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~ 89 (253)
T d3b60a1 11 TGDLEFRNVTFTYPGREVPALRNINLKIPAG-KTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRN 89 (253)
T ss_dssp CCCEEEEEEEECSSSSSCCSEEEEEEEECTT-CEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHH
T ss_pred CEEEEEEEEEEEECCCCCCEEECEEEEECCC-CEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHH
T ss_conf 3079999889992999976353328998599-999999999985999999986216888468987880121110665420
Q ss_pred HCEEECCCCCCC-CHHHHHH----------------HHHC-----------CCCCCCCCCCCCCHHHHH-HHHHHHHHCC
Q ss_conf 062333799999-2499999----------------9982-----------993000166254219999-9999998369
Q 004609 380 AGLYLPAKNHPR-LPWFDLI----------------LADI-----------GDHQSLEQNLSTFSGHIS-RIVDILELVS 430 (742)
Q Consensus 380 ~G~~vpa~~~~~-i~~~d~i----------------l~~i-----------g~~~~i~~~lStlSgg~k-rl~~i~~~~~ 430 (742)
...|+|+..... -.+.+++ +... |....+....+.||||++ |++++++++.
T Consensus 90 ~i~~v~Q~~~l~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal~~ 169 (253)
T d3b60a1 90 QVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLR 169 (253)
T ss_dssp TEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHH
T ss_pred EEEEEEECCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 68799502544786202433205722089999999999981799997355441014348889849999999999999954
Q ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCCCCCEECCEEEEE
Q ss_conf 9939998079999998989999999999983389489999258236510254531106459983
Q 004609 431 RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 431 ~~~LiLLDEp~~glDp~~g~aL~~all~~l~~~~~~viitTH~~~l~~~a~~~~~i~~~~~~~~ 494 (742)
+|.++||||||+++|+.....+...+.+ +.+ +.|+|++||+.+...+++++..+.+|.+...
T Consensus 170 ~p~ililDEpts~LD~~~~~~i~~~l~~-l~~-~~Tvi~itH~l~~~~~~D~v~vl~~G~Iv~~ 231 (253)
T d3b60a1 170 DSPILILDEATSALDTESERAIQAALDE-LQK-NRTSLVIAHRLSTIEQADEIVVVEDGIIVER 231 (253)
T ss_dssp CCSEEEEETTTSSCCHHHHHHHHHHHHH-HHT-TSEEEEECSCGGGTTTCSEEEEEETTEEEEE
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHH-HCC-CCEEEEEECCHHHHHHCCEEEEEECCEEEEE
T ss_conf 9988995164445898899999999987-522-7889999887999985999999989999998
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=99.93 E-value=4.2e-25 Score=187.86 Aligned_cols=165 Identities=15% Similarity=0.123 Sum_probs=128.9
Q ss_pred EEEEEEEEECC--CCEE--CCCCCCCCCCEEEEEEECCCCCCCHHHHHH-HHHHH-------------------HHHHCE
Q ss_conf 89800022119--9200--155300278239999907999810498448-76565-------------------444062
Q 004609 327 MTVGSLSKGIS--DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKAGL 382 (742)
Q Consensus 327 l~~~~i~~~y~--~~~v--~vsl~l~~g~~~~~ItGpNg~GKSTlLK~i-GLl~~-------------------la~~G~ 382 (742)
++++||+++|+ ++++ ++||++++| +.++|+||||+|||||+|++ |++.+ +.+...
T Consensus 2 I~~~nvsf~Y~~~~~~vL~~isl~i~~G-e~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~ 80 (241)
T d2pmka1 2 ITFRNIRFRYKPDSPVILDNINLSIKQG-EVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVG 80 (241)
T ss_dssp EEEEEEEEESSTTSCEEEEEEEEEEETT-CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEE
T ss_pred EEEEEEEEEECCCCCCEEEEEEEEECCC-CEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEEECCCCHHHHHCEEE
T ss_conf 2999999990899960374248998499-999999999998999999997357888889999999944002465535288
Q ss_pred EECCCCCCC-CHHHHHH---------------HHHCC-----------CCCCCCCCCCCCHHHHH-HHHHHHHHCCCCCE
Q ss_conf 333799999-2499999---------------99829-----------93000166254219999-99999983699939
Q 004609 383 YLPAKNHPR-LPWFDLI---------------LADIG-----------DHQSLEQNLSTFSGHIS-RIVDILELVSRESL 434 (742)
Q Consensus 383 ~vpa~~~~~-i~~~d~i---------------l~~ig-----------~~~~i~~~lStlSgg~k-rl~~i~~~~~~~~L 434 (742)
||||++... -++.+++ ....+ ....+....+.||||++ |++++++++.+|.+
T Consensus 81 ~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p~i 160 (241)
T d2pmka1 81 VVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKI 160 (241)
T ss_dssp EECSSCCCTTSBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCCSE
T ss_pred EEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCH
T ss_conf 98244655784000352235755438889999999755788876320134432787886698898987544344416513
Q ss_pred EEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCCCCCEECCEEEEE
Q ss_conf 998079999998989999999999983389489999258236510254531106459983
Q 004609 435 VLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 435 iLLDEp~~glDp~~g~aL~~all~~l~~~~~~viitTH~~~l~~~a~~~~~i~~~~~~~~ 494 (742)
+||||||+++|+.....+...+.+ +.+ +.|+|++||+.+....++++..+.+|.+..+
T Consensus 161 lilDEpts~LD~~~~~~i~~~l~~-l~~-~~Tvi~itH~l~~~~~~D~i~vl~~G~Iv~~ 218 (241)
T d2pmka1 161 LIFDEATSALDYESEHVIMRNMHK-ICK-GRTVIIIAHRLSTVKNADRIIVMEKGKIVEQ 218 (241)
T ss_dssp EEECCCCSCCCHHHHHHHHHHHHH-HHT-TSEEEEECSSGGGGTTSSEEEEEETTEEEEE
T ss_pred HHHHCCCCCCCHHHHHHHHHHHHH-HHC-CCEEEEEECCHHHHHHCCEEEEEECCEEEEE
T ss_conf 556477655598999999999999-858-9989999788999984999999989999998
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=99.93 E-value=9.3e-26 Score=192.42 Aligned_cols=164 Identities=19% Similarity=0.265 Sum_probs=128.7
Q ss_pred CEEEEEEEEECCCCEE-CCCCCCCCCCEEEEEEECCCCCCCHHHHHH-HHHHH------------------HHHHCEEEC
Q ss_conf 0898000221199200-155300278239999907999810498448-76565------------------444062333
Q 004609 326 EMTVGSLSKGISDFPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL------------------MSKAGLYLP 385 (742)
Q Consensus 326 ~l~~~~i~~~y~~~~v-~vsl~l~~g~~~~~ItGpNg~GKSTlLK~i-GLl~~------------------la~~G~~vp 385 (742)
.++++|++++| .+ |+||++.+| ++++|+||||+|||||||++ |+... ++..+.+++
T Consensus 3 il~~~dv~~~~---~l~~isl~I~~G-ei~~iiG~nGaGKSTLl~~l~Gl~~~~G~I~~~g~~i~~~~~~~~~~~~~~~~ 78 (231)
T d1l7vc_ 3 VMQLQDVAEST---RLGPLSGEVRAG-EILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKLALHRAYLS 78 (231)
T ss_dssp EEEEEEECCTT---TSCSEEEEEETT-CEEECBCCTTSSHHHHHHHHHTSCCCSSEEEESSSBGGGSCHHHHHHHEEEEC
T ss_pred EEEEECCCCCC---EECCEEEEECCC-CEEEEECCCCCCHHHHHHHHHCCCCCCEEEEECCEECCCCCHHHHHHHCEEEE
T ss_conf 99998741571---555888899489-89999989998099999999488799559999999998699899986402451
Q ss_pred CCCCCC--CH----------------HHHHHHHHCCCCCCCCCCCCCCHHHHH-HHHHHHHHCC-------CCCEEEECC
Q ss_conf 799999--24----------------999999982993000166254219999-9999998369-------993999807
Q 004609 386 AKNHPR--LP----------------WFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVS-------RESLVLIDE 439 (742)
Q Consensus 386 a~~~~~--i~----------------~~d~il~~ig~~~~i~~~lStlSgg~k-rl~~i~~~~~-------~~~LiLLDE 439 (742)
+..... .. .++++...++..+.+++..++||||++ |+..+++++. +|.++||||
T Consensus 79 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSgG~~Qrv~iA~al~~~~p~~~p~p~llllDE 158 (231)
T d1l7vc_ 79 QQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDE 158 (231)
T ss_dssp SCCCCCSSCBHHHHHHHHCSCTTCHHHHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESS
T ss_pred CCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHCCCHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEECC
T ss_conf 21357744209887641001466899999999865987676768445699889999999999851713389988999718
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHH-HHHHCCCCCCEECCEEEEE
Q ss_conf 999999898999999999998338948999925823-6510254531106459983
Q 004609 440 IGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 440 p~~glDp~~g~aL~~all~~l~~~~~~viitTH~~~-l~~~a~~~~~i~~~~~~~~ 494 (742)
|++|+||.....+.. ++..+.+.|.++|++||+.+ +..++++...+.+|.+..+
T Consensus 159 Pt~gLD~~~~~~i~~-~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~ 213 (231)
T d1l7vc_ 159 PMNSLDVAQQSALDK-ILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLAS 213 (231)
T ss_dssp CSTTCCHHHHHHHHH-HHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTEECCC
T ss_pred CCCCCCHHHHHHHHH-HHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEE
T ss_conf 777789899999999-9999986799999996779999997999999979989998
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=99.93 E-value=6.9e-26 Score=193.33 Aligned_cols=166 Identities=14% Similarity=0.130 Sum_probs=126.0
Q ss_pred CEEEEEEEEECCC-CEE--CCCCCCCCCCEEEEEEECCCCCCCHHHHHH-HHHHH-------------------HHHHCE
Q ss_conf 0898000221199-200--155300278239999907999810498448-76565-------------------444062
Q 004609 326 EMTVGSLSKGISD-FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKAGL 382 (742)
Q Consensus 326 ~l~~~~i~~~y~~-~~v--~vsl~l~~g~~~~~ItGpNg~GKSTlLK~i-GLl~~-------------------la~~G~ 382 (742)
.++++||+|+|++ +.+ ++||++++| ++++|+||||||||||+|++ |++.+ +.+...
T Consensus 1 mle~knvsf~Y~~~~~vL~~isl~i~~G-e~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 79 (242)
T d1mv5a_ 1 MLSARHVDFAYDDSEQILRDISFEAQPN-SIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIG 79 (242)
T ss_dssp CEEEEEEEECSSSSSCSEEEEEEEECTT-EEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred CEEEEEEEEECCCCCCEEEEEEEEECCC-CEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCEEECCCCHHHHHHHEE
T ss_conf 9799988998799984142258998599-999999999997999999999960989877988998844246788874367
Q ss_pred EECCCCCCC-CHHHHHH----------------HHHCCCC-----------CCCCCCCCCCHHHHH-HHHHHHHHCCCCC
Q ss_conf 333799999-2499999----------------9982993-----------000166254219999-9999998369993
Q 004609 383 YLPAKNHPR-LPWFDLI----------------LADIGDH-----------QSLEQNLSTFSGHIS-RIVDILELVSRES 433 (742)
Q Consensus 383 ~vpa~~~~~-i~~~d~i----------------l~~ig~~-----------~~i~~~lStlSgg~k-rl~~i~~~~~~~~ 433 (742)
||||.+... -++.+++ ....+.. ..+....+.||||++ |++++++++.+|+
T Consensus 80 ~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p~ 159 (242)
T d1mv5a_ 80 FVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPK 159 (242)
T ss_dssp EECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EECCCCCCCCCCHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 97566545785345430124455542356778999997555420374210152368789879999999999999852998
Q ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCCCCCEECCEEEEE
Q ss_conf 9998079999998989999999999983389489999258236510254531106459983
Q 004609 434 LVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 434 LiLLDEp~~glDp~~g~aL~~all~~l~~~~~~viitTH~~~l~~~a~~~~~i~~~~~~~~ 494 (742)
++||||||+++|+.....+... +..+.+ +.|+|++||+.+....++++..+.+|.+...
T Consensus 160 ililDEpts~LD~~~~~~i~~~-l~~l~~-~~Tvi~itH~l~~~~~~D~i~vl~~G~iv~~ 218 (242)
T d1mv5a_ 160 ILMLDEATASLDSESESMVQKA-LDSLMK-GRTTLVIAHRLSTIVDADKIYFIEKGQITGS 218 (242)
T ss_dssp EEEEECCSCSSCSSSCCHHHHH-HHHHHT-TSEEEEECCSHHHHHHCSEEEEEETTEECCC
T ss_pred EEEECCCCCCCCHHHHHHHHHH-HHHHCC-CCEEEEEECCHHHHHHCCEEEEEECCEEEEE
T ss_conf 9996588655698899999887-888717-9989999787999984999999989999999
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.93 E-value=1.7e-25 Score=190.68 Aligned_cols=173 Identities=16% Similarity=0.200 Sum_probs=132.0
Q ss_pred CCCCCCCCCCEEEEEEEEECCC--CEE--CCCCCCCCCCEEEEEEECCCCCCCHHHHHH-HHHHH---------------
Q ss_conf 8877789880898000221199--200--155300278239999907999810498448-76565---------------
Q 004609 317 PLKSDVENSEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL--------------- 376 (742)
Q Consensus 317 ~~~~~~~~~~l~~~~i~~~y~~--~~v--~vsl~l~~g~~~~~ItGpNg~GKSTlLK~i-GLl~~--------------- 376 (742)
|+... +|.++++||++.|++ .++ ++||++++| ++++|+||||||||||+|++ |+..+
T Consensus 9 pl~~~--~g~I~~~nvsf~Y~~~~~~vL~~isl~i~~G-e~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~ 85 (255)
T d2hyda1 9 PIEIK--QGRIDIDHVSFQYNDNEAPILKDINLSIEKG-ETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDF 85 (255)
T ss_dssp CCCCC--SCCEEEEEEEECSCSSSCCSEEEEEEEECTT-CEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGS
T ss_pred CCCCC--CCEEEEEEEEEEECCCCCCCEECEEEEECCC-CEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCEECCCC
T ss_conf 77777--8879999889995999976064438998399-89999889998099999999712786300015399875307
Q ss_pred ----HHHHCEEECCCCCC-CCHHHHHH---------------HHHCCCC-----------CCCCCCCCCCHHHHH-HHHH
Q ss_conf ----44406233379999-92499999---------------9982993-----------000166254219999-9999
Q 004609 377 ----MSKAGLYLPAKNHP-RLPWFDLI---------------LADIGDH-----------QSLEQNLSTFSGHIS-RIVD 424 (742)
Q Consensus 377 ----la~~G~~vpa~~~~-~i~~~d~i---------------l~~ig~~-----------~~i~~~lStlSgg~k-rl~~ 424 (742)
+.+...|||+.... .-++.+++ +...+.. ..+....+.||||++ |+++
T Consensus 86 ~~~~lr~~i~~v~Q~~~lf~~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~i 165 (255)
T d2hyda1 86 LTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSI 165 (255)
T ss_dssp CHHHHHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHH
T ss_pred CHHHHHHEEEEEECCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCHHCCCCCCCCHHHHHHHHH
T ss_conf 88886341456510156899879999851586799999999999969799997362420103338889849999999999
Q ss_pred HHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCCCCCEECCEEEEE
Q ss_conf 9983699939998079999998989999999999983389489999258236510254531106459983
Q 004609 425 ILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (742)
Q Consensus 425 i~~~~~~~~LiLLDEp~~glDp~~g~aL~~all~~l~~~~~~viitTH~~~l~~~a~~~~~i~~~~~~~~ 494 (742)
+++++.+|+++||||||+++|+.....+...+ ..+.+ +.|+|++||+.+....++++..+.+|.+...
T Consensus 166 ARal~~~p~ililDEpts~LD~~t~~~i~~~l-~~l~~-~~TvI~itH~~~~~~~~D~ii~l~~G~iv~~ 233 (255)
T d2hyda1 166 ARIFLNNPPILILDEATSALDLESESIIQEAL-DVLSK-DRTTLIVAHRLSTITHADKIVVIENGHIVET 233 (255)
T ss_dssp HHHHHHCCSEEEEESTTTTCCHHHHHHHHHHH-HHHTT-TSEEEEECSSGGGTTTCSEEEEEETTEEEEE
T ss_pred HHHHHCCCCEEEEECCCCCCCHHHHHHHHHHH-HHHHC-CCEEEEEECCHHHHHHCCEEEEEECCEEEEE
T ss_conf 99985599899983765447977999999999-98753-8889999689999985999999989999998
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.91 E-value=6.6e-25 Score=186.55 Aligned_cols=155 Identities=19% Similarity=0.231 Sum_probs=113.3
Q ss_pred CEEEEEEEEECCCCEE-CCCCCCCCCCEEEEEEECCCCCCCHHHHHH-HHHHH--------------HHHHCEEECCCCC
Q ss_conf 0898000221199200-155300278239999907999810498448-76565--------------4440623337999
Q 004609 326 EMTVGSLSKGISDFPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL--------------MSKAGLYLPAKNH 389 (742)
Q Consensus 326 ~l~~~~i~~~y~~~~v-~vsl~l~~g~~~~~ItGpNg~GKSTlLK~i-GLl~~--------------la~~G~~vpa~~~ 389 (742)
.++++|++++|+...+ ++||++.+| ++++|+||||+|||||||++ |++.+ +.....|+|+...
T Consensus 2 ~lev~~ls~~y~~~vl~~is~~i~~G-ei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~~~~~i~~~~~~~~ 80 (200)
T d1sgwa_ 2 KLEIRDLSVGYDKPVLERITMTIEKG-NVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEII 80 (200)
T ss_dssp EEEEEEEEEESSSEEEEEEEEEEETT-CCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSCC
T ss_pred EEEEEEEEEEECCEEEECEEEEECCC-CEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEHHHHCCCEEEEEECCC
T ss_conf 59999899993992884208898599-89999999997199999999662056778899998962673670899950135
Q ss_pred --CCCHHH-------------------HHHHHHCCCCCCCCCCCCCCHHHHH-HHHHHHHHCCCCCEEEECCCCCCCCHH
Q ss_conf --992499-------------------9999982993000166254219999-999999836999399980799999989
Q 004609 390 --PRLPWF-------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPS 447 (742)
Q Consensus 390 --~~i~~~-------------------d~il~~ig~~~~i~~~lStlSgg~k-rl~~i~~~~~~~~LiLLDEp~~glDp~ 447 (742)
..+.+. ...+..++..+ +.+.+++||||++ |+.++++++.+|.++||||||+|+|+.
T Consensus 81 ~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~LSgG~~qrv~ia~al~~~~~llllDEPt~gLD~~ 159 (200)
T d1sgwa_ 81 VPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLD-LKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDED 159 (200)
T ss_dssp CCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCC-TTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTT
T ss_pred CCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCC-CCCCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCHH
T ss_conf 78882899999999975488637999999998748856-30126868971888899999886499899986862016999
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCCCCC
Q ss_conf 89999999999983389489999258236510254531
Q 004609 448 EGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTR 485 (742)
Q Consensus 448 ~g~aL~~all~~l~~~~~~viitTH~~~l~~~a~~~~~ 485 (742)
....+...+.+...+.+.++++++|+. .+||....
T Consensus 160 ~~~~i~~~l~~~~~~~~~~ii~~~~~l---~~~D~~~~ 194 (200)
T d1sgwa_ 160 SKHKVLKSILEILKEKGIVIISSREEL---SYCDVNEN 194 (200)
T ss_dssp THHHHHHHHHHHHHHHSEEEEEESSCC---TTSSEEEE
T ss_pred HHHHHHHHHHHHHHCCCEEEEEEECHH---HHCCHHHH
T ss_conf 999999999999867999999991625---44161234
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.90 E-value=8.6e-24 Score=178.83 Aligned_cols=157 Identities=18% Similarity=0.081 Sum_probs=116.3
Q ss_pred CCCEE--CCCCCCCCCCEEEEEEECCCCCCCHHHHHH-HHHHHHH------HHCEEECCCCCCC-CHHHHHH--------
Q ss_conf 99200--155300278239999907999810498448-7656544------4062333799999-2499999--------
Q 004609 337 SDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS------KAGLYLPAKNHPR-LPWFDLI-------- 398 (742)
Q Consensus 337 ~~~~v--~vsl~l~~g~~~~~ItGpNg~GKSTlLK~i-GLl~~la------~~G~~vpa~~~~~-i~~~d~i-------- 398 (742)
++.+| ++||++.+| ++++|+||||+|||||||+| |++.+-. ....|+|+..... -.+.+++
T Consensus 47 ~g~pvL~~isl~i~~G-e~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~i~~v~Q~~~l~~~tv~eni~~~~~~~~ 125 (281)
T d1r0wa_ 47 VGNPVLKNINLNIEKG-EMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWIMPGTIKENIIFGVSYDE 125 (281)
T ss_dssp TTCEEEEEEEEEECTT-CEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCSCEEEECSSCCCCSEEHHHHHTTTSCCCH
T ss_pred CCCEEEECEEEEECCC-CEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEEEEECCCCCCCCEEECCCCCCCCCCC
T ss_conf 9976773759998599-999999899982999999995797478828999999999816430267603214203334560
Q ss_pred ------HHHCCC-----------CCCCCCCCCCCHHHHH-HHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf ------998299-----------3000166254219999-9999998369993999807999999898999999999998
Q 004609 399 ------LADIGD-----------HQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYL 460 (742)
Q Consensus 399 ------l~~ig~-----------~~~i~~~lStlSgg~k-rl~~i~~~~~~~~LiLLDEp~~glDp~~g~aL~~all~~l 460 (742)
...... ...+.....+||||++ |++++++++.+|.++||||||+++|+.....+...++..+
T Consensus 126 ~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~illLDEPts~LD~~~~~~i~~~~~~~~ 205 (281)
T d1r0wa_ 126 YRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKL 205 (281)
T ss_dssp HHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESCCCSSCHHHHHHHHHHCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 57999999977699998461233235555423779999999999999986963513338554489899999999999886
Q ss_pred HCCCCEEEEEECCHHHHHHCCCCCCEECCEEEEEC
Q ss_conf 33894899992582365102545311064599834
Q 004609 461 RDRVGLAVVTTHYADLSCLKDKDTRFENAATEFSL 495 (742)
Q Consensus 461 ~~~~~~viitTH~~~l~~~a~~~~~i~~~~~~~~~ 495 (742)
. .+.|+|++||+.+...+++++..+.+|.+.++.
T Consensus 206 ~-~~~tvi~itH~~~~l~~aDrI~vl~~G~i~~~G 239 (281)
T d1r0wa_ 206 M-ANKTRILVTSKMEHLRKADKILILHQGSSYFYG 239 (281)
T ss_dssp T-TTSEEEEECSCHHHHHTCSEEEEEETTEEEEEE
T ss_pred H-CCCEEEEEECHHHHHHHCCEEEEEECCEEEEEC
T ss_conf 2-899999992528999859999999899999987
|
| >d1ewqa1 a.113.1.1 (A:267-541) DNA repair protein MutS, domain III {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA repair protein MutS, domain III superfamily: DNA repair protein MutS, domain III family: DNA repair protein MutS, domain III domain: DNA repair protein MutS, domain III species: Thermus aquaticus [TaxId: 271]
Probab=99.88 E-value=4.9e-20 Score=152.89 Aligned_cols=248 Identities=15% Similarity=0.110 Sum_probs=192.8
Q ss_pred CCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH---HCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 9267773049999999999999999999999998---7299999997377999999861999999999999999999999
Q 004609 1 MGHAVVQKAQIPFGKSLEESQKLLNQTSAALAMM---QSQPLDLSTIEDIAGILNSAVSGQLLSPSEICAVRRTLRAVNN 77 (742)
Q Consensus 1 mG~~~~~~~~l~~~~~~~~i~~~l~~~~e~~~~~---~~~~~~l~~~~Di~~~l~~~~~g~~l~~~el~~i~~~l~~~~~ 77 (742)
||+|.+++|++.|+.|.+.|..|++.|+++..-. ....-.|.+++|+.+++.++..|.. ++.++..+..++.....
T Consensus 17 ~GkRlLr~wl~~Pl~d~~~I~~R~d~Ve~l~~~~~~~~~l~~~L~~i~Dler~l~~~~~~~~-~~~~~~~~~~~~~~~~~ 95 (275)
T d1ewqa1 17 PGRRLLQSWLRHPLLDRGPLEARLDRVEGFVREGALREGVRRLLYRLADLERLATRLELGRA-SPKDLGALRRSLQILPE 95 (275)
T ss_dssp HHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTCCCHHHHHHHHHTTCC-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHHH
T ss_conf 89999999986725899999999999999983936678899998544126789999981788-83379999999999889
Q ss_pred HHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCC-------CCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 999998732004774224004999881499916899999511116-------8881258959888999999997799999
Q 004609 78 VWKKLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEKIGFCIDC-------KLLIILDRASEDLELIRAERKRNMENLD 150 (742)
Q Consensus 78 l~~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~l~~~I~~~id~-------~~~~v~d~aS~~L~~iR~~~~~~~~~l~ 150 (742)
+...+..... .+. +..+.+.|...|.. +++.|++++|++|+.+|.........+.
T Consensus 96 i~~~l~~~~~--------~~~----------l~~l~~~i~~~i~~~~~~~~~~~~~i~~g~~~~ld~~~~~~~~~~~~l~ 157 (275)
T d1ewqa1 96 LRALLGEEVG--------LPD----------LSPLKEELEAALVEDPPLKVSEGGLIREGYDPDLDALRAAHREGVAYFL 157 (275)
T ss_dssp HHHHHCTTSC--------CCC----------CHHHHHHHHHHBCSSCCSCTTSSCCBCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCC--------CCH----------HHHHHHHHHHHHHHCCHHHCCCCCEECCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 9999874013--------527----------9999999999984176855646697589999788999999876899999
Q ss_pred HHHHHHHHHHHHHCCCCCCCCC-CCCCCEEEEECCCCCCCCCCCEEEEECCCCCEEEECCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999993699986600-016817998705445679995899870588389933311321225999996999999
Q 004609 151 SLLKKVAAQIFQAGGIDKPLIT-KRRSRMCVGIKASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAE 229 (742)
Q Consensus 151 ~~l~~~~~~~~~~~~~~~~~i~-~r~~r~~i~vk~~~~~~~~~g~v~~~S~sg~t~~~ep~~~~~l~n~~~~l~~~e~~e 229 (742)
..+... ....+.....+. ....+|++.+.......+|.+|.+-.+.++..+|..| ++.++++++.++...+...
T Consensus 158 ~~~~~~----~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~-~~~~l~~~l~~~~~~~~~~ 232 (275)
T d1ewqa1 158 ELEERE----RERTGIPTLKVGYNAVFGYYLEVTRPYYERVPKEYRPVQTLKDRQRYTLP-EMKEKEREVYRLEALIRRR 232 (275)
T ss_dssp HHHHHH----HHHHCCTTCEEEEETTTEEEEEEEGGGGGGSCTTCEEEEECSSEEEEECH-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH----HHHCCCCCEEEEECCCCCEEEEEHHHHHHHHHHHHHHHCCCCCEEEEECH-HHHHHHHHHHHHHHHHHHH
T ss_conf 999999----98628760222422666546652044554420113430123440256268-8889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9999999999999509999999999999999999997837279
Q 004609 230 ETAILSLLTAEIAKSEREIKYLMDRVLEIDLAFARAGFAQWMD 272 (742)
Q Consensus 230 e~~Il~~L~~~i~~~~~~l~~~~~~l~~lD~~~A~a~~a~~~~ 272 (742)
+.+|+.+|...+..+.+.+..+.+.+++|||++|+|.+|..+|
T Consensus 233 ~~~i~~~l~~~~~~~~~~l~~~~~~ia~LD~l~SlA~vA~~~G 275 (275)
T d1ewqa1 233 EEEVFLEVRERAKRQAEALREAARILAELDVYAALAEVAVRYG 275 (275)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9999999999999999999999999999999999999998659
|
| >d1wb9a1 a.113.1.1 (A:270-566) DNA repair protein MutS, domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA repair protein MutS, domain III superfamily: DNA repair protein MutS, domain III family: DNA repair protein MutS, domain III domain: DNA repair protein MutS, domain III species: Escherichia coli [TaxId: 562]
Probab=99.86 E-value=8.7e-20 Score=151.14 Aligned_cols=257 Identities=14% Similarity=0.113 Sum_probs=198.5
Q ss_pred CCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 92677730499999999999999999999999987299999997377999999861999999999999999999999999
Q 004609 1 MGHAVVQKAQIPFGKSLEESQKLLNQTSAALAMMQSQPLDLSTIEDIAGILNSAVSGQLLSPSEICAVRRTLRAVNNVWK 80 (742)
Q Consensus 1 mG~~~~~~~~l~~~~~~~~i~~~l~~~~e~~~~~~~~~~~l~~~~Di~~~l~~~~~g~~l~~~el~~i~~~l~~~~~l~~ 80 (742)
||+|.+++|++.|..|.++|..|++.|+++..+...-..-|..++|+.+++.++..|.. ++.++..+...+..+..+..
T Consensus 33 ~GkRlLr~wLl~Pl~d~~~I~~R~d~Ve~l~~~~~~l~~~L~~l~Dierl~~k~~~~~~-~~~~~~~~~~~~~~~~~~~~ 111 (297)
T d1wb9a1 33 MGSRMLKRWLHMPVRDTRVLLERQQTIGALQDFTAGLQPVLRQVGDLERILARLALRTA-RPRDLARMRHAFQQLPELRA 111 (297)
T ss_dssp HHHHHHHHHHHSCBCCHHHHHHHHHHHHHTGGGHHHHHHHHHTTCSHHHHHHHHHHTCC-CHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHH
T ss_conf 89999999986714899999999999999997687799999622208888989998760-20278888889996425888
Q ss_pred HHHHHHHCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCC-------CCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9987320047742240049998814999168999995111168-------881258959888999999997799999999
Q 004609 81 KLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEKIGFCIDCK-------LLIILDRASEDLELIRAERKRNMENLDSLL 153 (742)
Q Consensus 81 ~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~l~~~I~~~id~~-------~~~v~d~aS~~L~~iR~~~~~~~~~l~~~l 153 (742)
.+..... ............+..+...|..+|++. ++.|+++++++|+.+|.........+.++.
T Consensus 112 ~~~~~~~---------~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~i~~g~~~~ld~l~~~~~~~~~~l~~l~ 182 (297)
T d1wb9a1 112 QLETVDS---------APVQALREKMGEFAELRDLLERAIIDTPPVLVRDGGVIASGYNEELDEWRALADGATDYLERLE 182 (297)
T ss_dssp HHHSCCC---------HHHHHHHHHHCCCHHHHHHHHHHBCSSCCSCSTTCCCBCTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCC---------HHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 7663022---------5666421033200349999999984467655016995378878068999999887778999999
Q ss_pred HHHHHHHHHHCCCCCCCCC-CCCCCEEEEECCCCCCCCCCCEEEEECCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999993699986600-016817998705445679995899870588389933311321225999996999999999
Q 004609 154 KKVAAQIFQAGGIDKPLIT-KRRSRMCVGIKASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEETA 232 (742)
Q Consensus 154 ~~~~~~~~~~~~~~~~~i~-~r~~r~~i~vk~~~~~~~~~g~v~~~S~sg~t~~~ep~~~~~l~n~~~~l~~~e~~ee~~ 232 (742)
.... ...++....+. ....+|++.++.......|.+|++-....+ ++++.+..+.++++++..+..+....+..
T Consensus 183 ~~~~----~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~t~~l~~l~~~l~~~~~~i~~~~~~ 257 (297)
T d1wb9a1 183 VRER----ERTGLDTLKVGFNAVHGYYIQISRGQSHLAPINYMRRQTLKN-AERYIIPELKEYEDKVLTSKGKALALEKQ 257 (297)
T ss_dssp HHHH----HHHTCTTCEEEEETTTEEEEEEEHHHHTTSCTTCEEEEECSS-EEEEECHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH----HHCCCCCCEEEEEECCCEEEEECCCCCCCCCCHHHHHHHCCC-CEEECCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999----971877514877521544664022111112201456320246-31110277999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9999999999509999999999999999999997837279
Q 004609 233 ILSLLTAEIAKSEREIKYLMDRVLEIDLAFARAGFAQWMD 272 (742)
Q Consensus 233 Il~~L~~~i~~~~~~l~~~~~~l~~lD~~~A~a~~a~~~~ 272 (742)
++.+|...+.++.+.+..+.+.+++|||++|+|.+|..+|
T Consensus 258 ~~~~l~~~~~~~~~~l~~~~~~iaeLD~l~S~A~~A~~~N 297 (297)
T d1wb9a1 258 LYEELFDLLLPHLEALQQSASALAELDVLVNLAERAYTLN 297 (297)
T ss_dssp HHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9999999999999999999999999999999999998649
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.17 E-value=4e-12 Score=98.16 Aligned_cols=136 Identities=18% Similarity=0.088 Sum_probs=84.0
Q ss_pred EEEEEECCCCCCCHHHHHH-HHHHHHHHHCEEECCCCCC-----CCHH----HH---HHHH--HCCC-----CCCCCCCC
Q ss_conf 9999907999810498448-7656544406233379999-----9249----99---9999--8299-----30001662
Q 004609 353 VVVITGPNTGGKTASMKTL-GLASLMSKAGLYLPAKNHP-----RLPW----FD---LILA--DIGD-----HQSLEQNL 412 (742)
Q Consensus 353 ~~~ItGpNg~GKSTlLK~i-GLl~~la~~G~~vpa~~~~-----~i~~----~d---~il~--~ig~-----~~~i~~~l 412 (742)
.++|+||||+|||||+|++ |.+.+- .|.+....... +.++ +. ..+. .... .-......
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGKR--AIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNVQY 79 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGG--EEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETTEEECHHH
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCC--CCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
T ss_conf 89999899938999999998148888--6469987713288887653112336677788754113455443023037625
Q ss_pred CCCHHHHH-HHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCCCCCEECCEE
Q ss_conf 54219999-99999983699939998079999998989999999999983389489999258236510254531106459
Q 004609 413 STFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAAT 491 (742)
Q Consensus 413 StlSgg~k-rl~~i~~~~~~~~LiLLDEp~~glDp~~g~aL~~all~~l~~~~~~viitTH~~~l~~~a~~~~~i~~~~~ 491 (742)
..+++++. +..++......|.++++|||+.. +........++.+.+.+.+.++++++|...+..+++....+.++.+
T Consensus 80 ~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~--~~~~~~~~~~l~~~l~~~~~~il~~~h~~~~~~~~~~i~~~~~~~i 157 (178)
T d1ye8a1 80 FEELAIPILERAYREAKKDRRKVIIIDEIGKM--ELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRLPGAVL 157 (178)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCEEEECCCSTT--GGGCHHHHHHHHHHHTCTTSEEEEECCSSCCSHHHHHHHTCTTCEE
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCEEECCCCCC--CHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHCEEEEEECCEE
T ss_conf 66532013789999997409974230277731--0045799999998750579789999744778986365998719999
Q ss_pred E
Q ss_conf 9
Q 004609 492 E 492 (742)
Q Consensus 492 ~ 492 (742)
.
T Consensus 158 ~ 158 (178)
T d1ye8a1 158 I 158 (178)
T ss_dssp E
T ss_pred E
T ss_conf 9
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.84 E-value=5.4e-08 Score=69.65 Aligned_cols=74 Identities=22% Similarity=0.192 Sum_probs=55.4
Q ss_pred CCCCCCHHHHHHHHHH-H----HHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCCCC
Q ss_conf 6625421999999999-9----8369993999807999999898999999999998338948999925823651025453
Q 004609 410 QNLSTFSGHISRIVDI-L----ELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDT 484 (742)
Q Consensus 410 ~~lStlSgg~krl~~i-~----~~~~~~~LiLLDEp~~glDp~~g~aL~~all~~l~~~~~~viitTH~~~l~~~a~~~~ 484 (742)
..++.+|+|++.+..+ . .....++++++|||-+|++|.....|.. +++.... ..-+|+|||...+...++...
T Consensus 215 ~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~-~l~~~~~-~~QviitTHsp~~~~~~d~~~ 292 (308)
T d1e69a_ 215 QKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKR-LLKENSK-HTQFIVITHNKIVMEAADLLH 292 (308)
T ss_dssp CBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHH-HHHHHTT-TSEEEEECCCTTGGGGCSEEE
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHH-HHHHHCC-CCEEEEEECCHHHHHHCCCEE
T ss_conf 10110257776677777665565422674455432033579789999999-9998554-887999989889997324289
Q ss_pred C
Q ss_conf 1
Q 004609 485 R 485 (742)
Q Consensus 485 ~ 485 (742)
.
T Consensus 293 ~ 293 (308)
T d1e69a_ 293 G 293 (308)
T ss_dssp E
T ss_pred E
T ss_conf 9
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.32 E-value=2.5e-06 Score=58.15 Aligned_cols=77 Identities=13% Similarity=0.078 Sum_probs=59.4
Q ss_pred CCCCCCCHHHHH-HHHHHH----HHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCCC
Q ss_conf 166254219999-999999----836999399980799999989899999999999833894899992582365102545
Q 004609 409 EQNLSTFSGHIS-RIVDIL----ELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKD 483 (742)
Q Consensus 409 ~~~lStlSgg~k-rl~~i~----~~~~~~~LiLLDEp~~glDp~~g~aL~~all~~l~~~~~~viitTH~~~l~~~a~~~ 483 (742)
...++.+|||++ .+++++ ....+.++++||||.+|+|+.....++. ++..+...+.-+|++||...+...++..
T Consensus 327 ~~~~~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~-~l~~~~~~~~Q~I~iTH~~~~~~~ad~~ 405 (427)
T d1w1wa_ 327 FKDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAA-YIRRHRNPDLQFIVISLKNTMFEKSDAL 405 (427)
T ss_dssp CCCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHH-HHHHHCBTTBEEEEECSCHHHHTTCSEE
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHCCCCEEEEEECCHHHHHHCCCE
T ss_conf 434333223047999999999995479997799968877789999999999-9999728998899995878999736617
Q ss_pred CCE
Q ss_conf 311
Q 004609 484 TRF 486 (742)
Q Consensus 484 ~~i 486 (742)
..+
T Consensus 406 ~~V 408 (427)
T d1w1wa_ 406 VGV 408 (427)
T ss_dssp EEE
T ss_pred EEE
T ss_conf 999
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=97.89 E-value=0.00035 Score=43.27 Aligned_cols=128 Identities=18% Similarity=0.166 Sum_probs=65.0
Q ss_pred CCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCEEECCCC-CCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 27823999990799981049844876565444062333799-99924999999982993000166254219999999999
Q 004609 348 ECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKN-HPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDIL 426 (742)
Q Consensus 348 ~~g~~~~~ItGpNg~GKSTlLK~iGLl~~la~~G~~vpa~~-~~~i~~~d~il~~ig~~~~i~~~lStlSgg~krl~~i~ 426 (742)
.++..-.+|+||-|.|||+++.-++ .-+. .| -||..- ...+-. +... .+-.+.+....-+.|+..++
T Consensus 40 r~~k~n~llvG~~GvGKtaiv~~la--~~i~-~~-~vp~~l~~~~i~~-------ld~~-~l~ag~~~~g~~e~r~~~i~ 107 (387)
T d1qvra2 40 RRTKNNPVLIGEPGVGKTAIVEGLA--QRIV-KG-DVPEGLKGKRIVS-------LQMG-SLLAGAKYRGEFEERLKAVI 107 (387)
T ss_dssp CSSCCCCEEEECTTSCHHHHHHHHH--HHHH-HT-CSCTTSTTCEEEE-------ECC------------CHHHHHHHHH
T ss_pred CCCCCCCEEECCCCCCHHHHHHHHH--HHHH-HC-CCCHHHCCCEEEE-------EEHH-HHHCCCCCCHHHHHHHHHHH
T ss_conf 4889997687999988999999999--9998-08-9997886966899-------5576-66526674136899999999
Q ss_pred HH---CCCCCEEEECCCCCCCCH---HHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCCCCCEEC
Q ss_conf 83---699939998079999998---989999999999983389489999258236510254531106
Q 004609 427 EL---VSRESLVLIDEIGSGTDP---SEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFEN 488 (742)
Q Consensus 427 ~~---~~~~~LiLLDEp~~glDp---~~g~aL~~all~~l~~~~~~viitTH~~~l~~~a~~~~~i~~ 488 (742)
.. ..++-++.+||+-.-... ..+..++..+.-+|......+|.+|...+...+ .....+..
T Consensus 108 ~~~~~~~~~~ilfide~h~l~~~g~~~g~~d~a~~Lkp~L~rg~~~~I~~tT~~ey~~~-e~d~al~r 174 (387)
T d1qvra2 108 QEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARGELRLIGATTLDEYREI-EKDPALER 174 (387)
T ss_dssp HHHHTTCSSEEEEECCC-------------------HHHHHTTCCCEEEEECHHHHHHH-TTCTTTCS
T ss_pred HHHCCCCCCEEEEECCHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCHHHHHHH-CCCHHHHH
T ss_conf 98505899669872408888427778774138999999973788516663689999876-33679998
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=97.51 E-value=0.0028 Score=37.06 Aligned_cols=116 Identities=13% Similarity=0.156 Sum_probs=66.0
Q ss_pred CCCCCCCCCCEEEEEEECCCCCCCHHHHHHH-HHHHHHHHCEEECCCCCCCCHHHHHH--HH-HCCCCCCCCCCCCCCHH
Q ss_conf 1553002782399999079998104984487-65654440623337999992499999--99-82993000166254219
Q 004609 342 PIDIKVECETRVVVITGPNTGGKTASMKTLG-LASLMSKAGLYLPAKNHPRLPWFDLI--LA-DIGDHQSLEQNLSTFSG 417 (742)
Q Consensus 342 ~vsl~l~~g~~~~~ItGpNg~GKSTlLK~iG-Ll~~la~~G~~vpa~~~~~i~~~d~i--l~-~ig~~~~i~~~lStlSg 417 (742)
|+++.-.. ..+++++||||+||||.+-=++ .+.-..+....+.++. .+++-++++ |+ .+|..-........+..
T Consensus 1 Pl~~~~~~-p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt-~R~gA~eQL~~~a~~l~v~~~~~~~~~d~~~ 78 (211)
T d2qy9a2 1 PLNVEGKA-PFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDT-FRAAAVEQLQVWGQRNNIPVIAQHTGADSAS 78 (211)
T ss_dssp CCCCCSCT-TEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEECCCT-TCHHHHHHHHHHHHHTTCCEECCSTTCCHHH
T ss_pred CCCCCCCC-CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC-CCCCCHHHHHHHHHHCCCCCCCCCCCCCHHH
T ss_conf 98778999-979999899999989999999999997799479982321-3666120455543433886211356877999
Q ss_pred HHHHHHHHHHHCCCCCEEEECCCCC-CCCHHHHHHHHHHHHHHHH
Q ss_conf 9999999998369993999807999-9998989999999999983
Q 004609 418 HISRIVDILELVSRESLVLIDEIGS-GTDPSEGVALATSILQYLR 461 (742)
Q Consensus 418 g~krl~~i~~~~~~~~LiLLDEp~~-glDp~~g~aL~~all~~l~ 461 (742)
-.++.... +...+-.+||+|-+|. +.|...-..|.. +.+...
T Consensus 79 ~l~~~~~~-a~~~~~d~ilIDTaGr~~~d~~~~~el~~-l~~~~~ 121 (211)
T d2qy9a2 79 VIFDAIQA-AKARNIDVLIADTAGRLQNKSHLMEELKK-IVRVMK 121 (211)
T ss_dssp HHHHHHHH-HHHTTCSEEEECCCCCGGGHHHHHHHHHH-HHHHHT
T ss_pred HHHHHHHH-HHHCCCCEEEECCCCCCCCCHHHHHHHHH-HHHHHH
T ss_conf 99999999-98769988996568876320778999999-999985
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=97.29 E-value=0.0041 Score=35.90 Aligned_cols=108 Identities=19% Similarity=0.167 Sum_probs=62.8
Q ss_pred EEEEEEECCCCCCCHHHHHHH-HHHHHHHHCEEECCCCCCCCHHHHHH--HH-HCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 399999079998104984487-65654440623337999992499999--99-829930001662542199999999998
Q 004609 352 RVVVITGPNTGGKTASMKTLG-LASLMSKAGLYLPAKNHPRLPWFDLI--LA-DIGDHQSLEQNLSTFSGHISRIVDILE 427 (742)
Q Consensus 352 ~~~~ItGpNg~GKSTlLK~iG-Ll~~la~~G~~vpa~~~~~i~~~d~i--l~-~ig~~~~i~~~lStlSgg~krl~~i~~ 427 (742)
.+++++||||+||||.+-=++ .+.-..+....+.++. .+.+-++++ ++ .++..-......+.+... .+......
T Consensus 11 ~vi~lvGp~GvGKTTTiaKLA~~~~~~g~kV~lit~Dt-~R~gA~eQL~~~a~~l~v~~~~~~~~~~~~~~-~~~~~~~~ 88 (207)
T d1ls1a2 11 NLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADT-QRPAAREQLRLLGEKVGVPVLEVMDGESPESI-RRRVEEKA 88 (207)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCS-SCHHHHHHHHHHHHHHTCCEEECCTTCCHHHH-HHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC-CCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHH-HHHHHHHH
T ss_conf 68999899999889999999999997799279995443-46408888999998628863111244203678-88898887
Q ss_pred HCCCCCEEEECCCCC-CCCHHHHHHHHHHHHHHHHC
Q ss_conf 369993999807999-99989899999999999833
Q 004609 428 LVSRESLVLIDEIGS-GTDPSEGVALATSILQYLRD 462 (742)
Q Consensus 428 ~~~~~~LiLLDEp~~-glDp~~g~aL~~all~~l~~ 462 (742)
...+..+||+|=+|. +.|...-..|.. +.+....
T Consensus 89 ~~~~~d~vlIDTaGr~~~d~~~~~el~~-~~~~~~~ 123 (207)
T d1ls1a2 89 RLEARDLILVDTAGRLQIDEPLMGELAR-LKEVLGP 123 (207)
T ss_dssp HHHTCCEEEEECCCCSSCCHHHHHHHHH-HHHHHCC
T ss_pred HHCCCCCEEECCCCCCHHHHHHHHHHHH-HHHHCCC
T ss_conf 6336764033454420000366889999-9863187
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=97.27 E-value=0.0053 Score=35.15 Aligned_cols=126 Identities=16% Similarity=0.211 Sum_probs=73.3
Q ss_pred CCCCCEEEEEEECCCCCCCHHHHHHHHH-HHHHHHCEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH-HHHH
Q ss_conf 0278239999907999810498448765-6544406233379999924999999982993000166254219999-9999
Q 004609 347 VECETRVVVITGPNTGGKTASMKTLGLA-SLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHIS-RIVD 424 (742)
Q Consensus 347 l~~g~~~~~ItGpNg~GKSTlLK~iGLl-~~la~~G~~vpa~~~~~i~~~d~il~~ig~~~~i~~~lStlSgg~k-rl~~ 424 (742)
++.| .++.|.||.++|||++.-.+... +-......|+-.++.... .++..+|..-+----....+.++. ++..
T Consensus 54 ip~g-~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE~~~~~----~~a~~~Gvd~d~i~~~~~~~~E~~~~~~~ 128 (268)
T d1xp8a1 54 IPRG-RITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDP----VYARALGVNTDELLVSQPDNGEQALEIME 128 (268)
T ss_dssp EETT-SEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCH----HHHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCCC-EEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCH----HHHHHHCCCCHHEEEECCCCHHHHHHHHH
T ss_conf 6675-478980587652279999999999707998999988765899----99998289812379974899999999999
Q ss_pred HHHHCCCCCEEEECCCCCCC-------CHHH-----HHHH----HHHHHHHHHCCCCEEEEEECCHH-HH
Q ss_conf 99836999399980799999-------9898-----9999----99999998338948999925823-65
Q 004609 425 ILELVSRESLVLIDEIGSGT-------DPSE-----GVAL----ATSILQYLRDRVGLAVVTTHYAD-LS 477 (742)
Q Consensus 425 i~~~~~~~~LiLLDEp~~gl-------Dp~~-----g~aL----~~all~~l~~~~~~viitTH~~~-l~ 477 (742)
.+....+..|+++|=.++-. +..+ ++.+ ...+...+...+..++++.|... ..
T Consensus 129 ~l~~~~~~~liIiDSi~al~~r~e~~~~~~~~~~~~~a~~l~~~lr~l~~~~~~~~~~vi~tNQv~~~~g 198 (268)
T d1xp8a1 129 LLVRSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQVREKIG 198 (268)
T ss_dssp HHHTTTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEEC-----
T ss_pred HHHHCCCCCEEEEECCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCC
T ss_conf 9986589719999454545538887165341057799999999999977666432976999967860265
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=97.08 E-value=0.0082 Score=33.83 Aligned_cols=108 Identities=16% Similarity=0.085 Sum_probs=58.8
Q ss_pred CCCEEEEEEECCCCCCCHHHHHHHH-HHHHHHHCEEECCCCCCCCHHHHHHH--HH-CCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 7823999990799981049844876-56544406233379999924999999--98-29930001662542199999999
Q 004609 349 CETRVVVITGPNTGGKTASMKTLGL-ASLMSKAGLYLPAKNHPRLPWFDLIL--AD-IGDHQSLEQNLSTFSGHISRIVD 424 (742)
Q Consensus 349 ~g~~~~~ItGpNg~GKSTlLK~iGL-l~~la~~G~~vpa~~~~~i~~~d~il--~~-ig~~~~i~~~lStlSgg~krl~~ 424 (742)
++ .+++++||||+||||.+==++. +.-..+...++.++. .+.+-++++- ++ +|..-......+.+..-... ..
T Consensus 5 ~~-~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit~Dt-~R~gA~eQL~~~a~~l~i~~~~~~~~~d~~~~~~~-~~ 81 (207)
T d1okkd2 5 KG-RVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDT-FRAAGGTQLSEWGKRLSIPVIQGPEGTDPAALAYD-AV 81 (207)
T ss_dssp SS-SEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCC-SSTTHHHHHHHHHHHHTCCEECCCTTCCHHHHHHH-HH
T ss_pred CC-EEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECC-CCCCCHHHHHHCCCCCCCEEEECCCCCCHHHHHHH-HH
T ss_conf 97-79999899999889999999999997799079998136-66540266764054568238961677427889999-89
Q ss_pred HHHHCCCCCEEEECCCCCC-CCHHHHHHHHHHHHHHH
Q ss_conf 9983699939998079999-99898999999999998
Q 004609 425 ILELVSRESLVLIDEIGSG-TDPSEGVALATSILQYL 460 (742)
Q Consensus 425 i~~~~~~~~LiLLDEp~~g-lDp~~g~aL~~all~~l 460 (742)
......+..+||+|=+|.+ .|...-..+.. +.+..
T Consensus 82 ~~~~~~~~d~ilIDTaGr~~~d~~l~~el~~-~~~~~ 117 (207)
T d1okkd2 82 QAMKARGYDLLFVDTAGRLHTKHNLMEELKK-VKRAI 117 (207)
T ss_dssp HHHHHHTCSEEEECCCCCCTTCHHHHHHHHH-HHHHH
T ss_pred HHHHHCCCCEEECCCCCCCHHHHHHHHHHHH-HHHHH
T ss_conf 9999879999971752223112778888777-77776
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.99 E-value=0.0098 Score=33.29 Aligned_cols=125 Identities=10% Similarity=0.070 Sum_probs=67.0
Q ss_pred CCCCCEEEEEEECCCCCCCHHHHHHHHHHHH-HHHCEEECCCCCCCCHHHHHHHHHCCCC----------CCCCCCCCCC
Q ss_conf 0278239999907999810498448765654-4406233379999924999999982993----------0001662542
Q 004609 347 VECETRVVVITGPNTGGKTASMKTLGLASLM-SKAGLYLPAKNHPRLPWFDLILADIGDH----------QSLEQNLSTF 415 (742)
Q Consensus 347 l~~g~~~~~ItGpNg~GKSTlLK~iGLl~~l-a~~G~~vpa~~~~~i~~~d~il~~ig~~----------~~i~~~lStl 415 (742)
+++| .+++|.||.|+|||+++..+.....- ....+|+.... ..-.+. +.+..++.. ..........
T Consensus 23 i~~g-sl~li~G~pGsGKT~l~~qia~~~~~~~~~~~~is~e~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (242)
T d1tf7a2 23 FFKD-SIILATGATGTGKTLLVSRFVENACANKERAILFAYEE-SRAQLL-RNAYSWGMDFEEMERQNLLKIVCAYPESA 99 (242)
T ss_dssp EESS-CEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSS-CHHHHH-HHHHTTSCCHHHHHHTTSEEECCCCGGGS
T ss_pred CCCC-EEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCEEECCC-CHHHHH-HHHHHCCCCHHHHHHCCCEEEEEEECCHH
T ss_conf 8698-49999918999999999999999987232441121267-999999-99998299869985458617997300010
Q ss_pred HHHHHHHHHH--HHHCCCCCEEEECCCCC---CCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHH
Q ss_conf 1999999999--98369993999807999---999898999999999998338948999925823
Q 004609 416 SGHISRIVDI--LELVSRESLVLIDEIGS---GTDPSEGVALATSILQYLRDRVGLAVVTTHYAD 475 (742)
Q Consensus 416 Sgg~krl~~i--~~~~~~~~LiLLDEp~~---glDp~~g~aL~~all~~l~~~~~~viitTH~~~ 475 (742)
... ..+..+ ......+.++++|-.+. +.+...-......+...+.+.+.+++++.|-..
T Consensus 100 ~~~-~~~~~i~~~i~~~~~~~vviDs~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~ 163 (242)
T d1tf7a2 100 GLE-DHLQIIKSEINDFKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQ 163 (242)
T ss_dssp CHH-HHHHHHHHHHHTTCCSEEEEECHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSS
T ss_pred HHH-HHHHHHHHHHHHCCCCEEEEECCHHHHCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEEE
T ss_conf 179-9999999999840885332204314304899999999999999999986983999985675
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=96.88 E-value=0.012 Score=32.71 Aligned_cols=124 Identities=16% Similarity=0.191 Sum_probs=68.8
Q ss_pred CCCCCEEEEEEECCCCCCCHHHHHHHHHH-HHHHHCEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH-HHHH
Q ss_conf 02782399999079998104984487656-544406233379999924999999982993000166254219999-9999
Q 004609 347 VECETRVVVITGPNTGGKTASMKTLGLAS-LMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHIS-RIVD 424 (742)
Q Consensus 347 l~~g~~~~~ItGpNg~GKSTlLK~iGLl~-~la~~G~~vpa~~~~~i~~~d~il~~ig~~~~i~~~lStlSgg~k-rl~~ 424 (742)
++.| .++.|.||.|+||||++-.+...+ -......|+-.++.... ..+..+|..-+---....-+.++. .+..
T Consensus 51 i~~g-~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~~~~~----~~a~~~Gvd~d~v~~~~~~~~E~~~~~i~ 125 (263)
T d1u94a1 51 LPMG-RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDP----IYARKLGVDIDNLLCSQPDTGEQALEICD 125 (263)
T ss_dssp EETT-SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCH----HHHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCCC-EEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCH----HHHHHHCCCHHHEEEECCCCHHHHHHHHH
T ss_conf 6673-589980577747899999999998708987999865445489----99998399879979962898999999999
Q ss_pred HHHHCCCCCEEEECCCCCCCC-------HHH-----HHH-H---HHHHHHHHHCCCCEEEEEECCHH
Q ss_conf 998369993999807999999-------898-----999-9---99999998338948999925823
Q 004609 425 ILELVSRESLVLIDEIGSGTD-------PSE-----GVA-L---ATSILQYLRDRVGLAVVTTHYAD 475 (742)
Q Consensus 425 i~~~~~~~~LiLLDEp~~glD-------p~~-----g~a-L---~~all~~l~~~~~~viitTH~~~ 475 (742)
.+....+..|+++|=.++-.- ..+ ++. + ...+...+...+..+|++.|-..
T Consensus 126 ~l~~~~~~~liViDSi~al~~~~e~~~~~~~~~~~~~a~~l~~~~~~l~~~~~~~~~~vi~~NQv~~ 192 (263)
T d1u94a1 126 ALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRM 192 (263)
T ss_dssp HHHHHTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCEEEEEEC---
T ss_pred HHHHCCCCCEEEEECCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEE
T ss_conf 9985499989999886556660210265231047899999999999998766205816999878996
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=96.81 E-value=0.013 Score=32.34 Aligned_cols=96 Identities=22% Similarity=0.323 Sum_probs=52.2
Q ss_pred EEEEEEECCCCCCCHHHHHHHHHHHHHHHCEE---ECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHH-HHHHHHH--
Q ss_conf 39999907999810498448765654440623---33799999249999999829930001662542199-9999999--
Q 004609 352 RVVVITGPNTGGKTASMKTLGLASLMSKAGLY---LPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGH-ISRIVDI-- 425 (742)
Q Consensus 352 ~~~~ItGpNg~GKSTlLK~iGLl~~la~~G~~---vpa~~~~~i~~~d~il~~ig~~~~i~~~lStlSgg-~krl~~i-- 425 (742)
..+++.||-|+|||++.+.++-. .|.+ +..+ .+ . +.+.|. ++++..+
T Consensus 46 ~~iLL~GppGtGKT~la~~iA~~-----~~~~~~~i~~~---~l---------------~----~~~~g~~~~~l~~~f~ 98 (256)
T d1lv7a_ 46 KGVLMVGPPGTGKTLLAKAIAGE-----AKVPFFTISGS---DF---------------V----EMFVGVGASRVRDMFE 98 (256)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH-----HTCCEEEECSC---SS---------------T----TSCCCCCHHHHHHHHH
T ss_pred CEEEEECCCCCCCCHHHHHHHHH-----CCCCEEEEEHH---HH---------------H----HCCHHHHHHHHHHHHH
T ss_conf 86786689988822899999998-----29987998869---94---------------2----6001078999999999
Q ss_pred HHHCCCCCEEEECCCCC----------CCCHHHHHHHHHHHHHHHH---CC-CCEEEEEECCHH
Q ss_conf 98369993999807999----------9998989999999999983---38-948999925823
Q 004609 426 LELVSRESLVLIDEIGS----------GTDPSEGVALATSILQYLR---DR-VGLAVVTTHYAD 475 (742)
Q Consensus 426 ~~~~~~~~LiLLDEp~~----------glDp~~g~aL~~all~~l~---~~-~~~viitTH~~~ 475 (742)
.+....|++|++||.=. +.++. ...+...++..+. .. +..+|.||++.+
T Consensus 99 ~A~~~~P~il~iDeiD~l~~~r~~~~~~~~~~-~~~~~~~ll~~~d~~~~~~~v~vIatTn~~~ 161 (256)
T d1lv7a_ 99 QAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDE-REQTLNQMLVEMDGFEGNEGIIVIAATNRPD 161 (256)
T ss_dssp HHHTTCSEEEEETTHHHHTCCCSTTSCCTTCH-HHHHHHHHHHHHHTCCSSSCEEEEEEESCTT
T ss_pred HHHHCCCEEEEEECHHHHCCCCCCCCCCCCHH-HHHHHHHHHHHHHCCCCCCCEEEEEECCCCC
T ss_conf 99975998999977566575678988887489-9999999999953877779989998079931
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=96.80 E-value=0.0052 Score=35.21 Aligned_cols=124 Identities=13% Similarity=0.096 Sum_probs=63.0
Q ss_pred CCCCEEEEEEECCCCCCCHHHHHHHHHHHHHH-----------HCEEECCCCCCCCH-HHHHHH---HHCCCC-------
Q ss_conf 27823999990799981049844876565444-----------06233379999924-999999---982993-------
Q 004609 348 ECETRVVVITGPNTGGKTASMKTLGLASLMSK-----------AGLYLPAKNHPRLP-WFDLIL---ADIGDH------- 405 (742)
Q Consensus 348 ~~g~~~~~ItGpNg~GKSTlLK~iGLl~~la~-----------~G~~vpa~~~~~i~-~~d~il---~~ig~~------- 405 (742)
.+| .+.+|.|+.|+|||||+-.++....... ..+|+..+. ... +..++. ..++..
T Consensus 27 ~pg-~~~~i~G~~G~GKS~l~l~la~~ia~g~~~~~~~~~~~~~vl~~~~E~--~~~~~~~Rl~~~~~~~~~~~~~~~~~ 103 (274)
T d1nlfa_ 27 VAG-TVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAED--PPTAIHHRLHALGAHLSAEERQAVAD 103 (274)
T ss_dssp ETT-SEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSS--CHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred CCC-CEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCC--HHHHHHHHHHHHHHCCCHHHHHCCCC
T ss_conf 589-589999289998999999999999769972111235787368985123--49999999999862368666531233
Q ss_pred -CCCCCCC-CCCHH-HHHHHHHHHHHCCCCCEEEECCCCC-----CCCHHHHHHHHHHHHHHHHCCCCEEEEEECCH
Q ss_conf -0001662-54219-9999999998369993999807999-----99989899999999999833894899992582
Q 004609 406 -QSLEQNL-STFSG-HISRIVDILELVSRESLVLIDEIGS-----GTDPSEGVALATSILQYLRDRVGLAVVTTHYA 474 (742)
Q Consensus 406 -~~i~~~l-StlSg-g~krl~~i~~~~~~~~LiLLDEp~~-----glDp~~g~aL~~all~~l~~~~~~viitTH~~ 474 (742)
..+.... +.... ....+..+.....++.+|++|-+.+ -.|......+...+.......+++++++.|..
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~vi~v~H~~ 180 (274)
T d1nlfa_ 104 GLLIQPLIGSLPNIMAPEWFDGLKRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHAS 180 (274)
T ss_dssp HEEECCCTTSCCCTTSHHHHHHHHHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC-
T ss_pred CCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEECCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEHHHHCC
T ss_conf 32321456742035789999998875267658962813542266523225689999887777644797540131005
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=96.77 E-value=0.015 Score=32.11 Aligned_cols=110 Identities=17% Similarity=0.123 Sum_probs=62.0
Q ss_pred CCCCEEEEEEECCCCCCCHHHHHHH-HHHHHHHHCEEECCCCCCCCHHHHHHHH---HCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 2782399999079998104984487-6565444062333799999249999999---82993000166254219999999
Q 004609 348 ECETRVVVITGPNTGGKTASMKTLG-LASLMSKAGLYLPAKNHPRLPWFDLILA---DIGDHQSLEQNLSTFSGHISRIV 423 (742)
Q Consensus 348 ~~g~~~~~ItGpNg~GKSTlLK~iG-Ll~~la~~G~~vpa~~~~~i~~~d~il~---~ig~~~~i~~~lStlSgg~krl~ 423 (742)
.+. .+++++||||+||||.+==++ .+.-..+....+.++. .+++-++++-. .++..-......+.+..-.. ..
T Consensus 9 ~~p-~vi~lvGptGvGKTTTiAKLAa~~~~~~~kV~lit~Dt-~R~gA~eQL~~~a~~l~i~~~~~~~~~d~~~~~~-~~ 85 (213)
T d1vmaa2 9 EPP-FVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADT-FRAAAIEQLKIWGERVGATVISHSEGADPAAVAF-DA 85 (213)
T ss_dssp SSC-EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECT-TCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHH-HH
T ss_pred CCC-EEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECC-CCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH-HH
T ss_conf 999-89999899999889999999999997799069996013-3420467888776432764103677776899878-87
Q ss_pred HHHHHCCCCCEEEECCCCCCC-CHHHHHHHHHHHHHHHH
Q ss_conf 999836999399980799999-98989999999999983
Q 004609 424 DILELVSRESLVLIDEIGSGT-DPSEGVALATSILQYLR 461 (742)
Q Consensus 424 ~i~~~~~~~~LiLLDEp~~gl-Dp~~g~aL~~all~~l~ 461 (742)
.......+..+||+|=+|.+- |...-..+.. +.+...
T Consensus 86 ~~~~~~~~~d~ilIDTaGr~~~d~~~~~el~~-~~~~~~ 123 (213)
T d1vmaa2 86 VAHALARNKDVVIIDTAGRLHTKKNLMEELRK-VHRVVK 123 (213)
T ss_dssp HHHHHHTTCSEEEEEECCCCSCHHHHHHHHHH-HHHHGG
T ss_pred HHHHHHCCCCEEEEECCCCCCCHHHHHHHHHH-HHHHHH
T ss_conf 89998769998998245533016888899888-876642
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=96.70 E-value=0.016 Score=31.77 Aligned_cols=29 Identities=17% Similarity=0.216 Sum_probs=24.6
Q ss_pred CCCCCCEEEEEEECCCCCCCHHHHHHHHHH
Q ss_conf 002782399999079998104984487656
Q 004609 346 KVECETRVVVITGPNTGGKTASMKTLGLAS 375 (742)
Q Consensus 346 ~l~~g~~~~~ItGpNg~GKSTlLK~iGLl~ 375 (742)
-+.+| ++++|.|+.|+|||+++-.++...
T Consensus 31 G~~~G-~l~vi~G~~G~GKT~~~~~la~~~ 59 (277)
T d1cr2a_ 31 GARGG-EVIMVTSGSGMGKSTFVRQQALQW 59 (277)
T ss_dssp SBCTT-CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCC-EEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 97898-089999479997999999999726
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.69 E-value=0.016 Score=31.73 Aligned_cols=125 Identities=19% Similarity=0.212 Sum_probs=69.5
Q ss_pred CCCCCCEEEEEEECCCCCCCHHHHHH-HHHHHHHHHCEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH-HHH
Q ss_conf 00278239999907999810498448-7656544406233379999924999999982993000166254219999-999
Q 004609 346 KVECETRVVVITGPNTGGKTASMKTL-GLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHIS-RIV 423 (742)
Q Consensus 346 ~l~~g~~~~~ItGpNg~GKSTlLK~i-GLl~~la~~G~~vpa~~~~~i~~~d~il~~ig~~~~i~~~lStlSgg~k-rl~ 423 (742)
-++.| .++.|.||+|+|||+++-.+ ...+-......|+-.++..... .+..+|...+---.....+.++. .+.
T Consensus 56 G~~~g-~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~~~~~e----~a~~~GvD~d~il~~~~~~~E~~~~~~ 130 (269)
T d1mo6a1 56 GLPRG-RVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPD----YAKKLGVDTDSLLVSQPDTGEQALEIA 130 (269)
T ss_dssp SBCSS-SEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSCCCCHH----HHHHHTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCCCC-EEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHH----HHHHHCCCHHHEEEECCCCHHHHHHHH
T ss_conf 86663-3699964887488999999999875489889999897667999----999809988995896699899999999
Q ss_pred HHHHHCCCCCEEEECCCCCCCCHHH------------HHHHHHHHHH----HHHCCCCEEEEEECCHH
Q ss_conf 9998369993999807999999898------------9999999999----98338948999925823
Q 004609 424 DILELVSRESLVLIDEIGSGTDPSE------------GVALATSILQ----YLRDRVGLAVVTTHYAD 475 (742)
Q Consensus 424 ~i~~~~~~~~LiLLDEp~~glDp~~------------g~aL~~all~----~l~~~~~~viitTH~~~ 475 (742)
..+....+..|+++|=.++-.-..+ ++.+....+. .+...+..++++.|-..
T Consensus 131 ~~l~~~~~~~liIiDSi~al~~~~E~e~~~~~~~~~~~a~~l~~~l~~l~~~~~~~~~~vi~~NQv~~ 198 (269)
T d1mo6a1 131 DMLIRSGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINQLRD 198 (269)
T ss_dssp HHHHHTTCEEEEEEECSTTCCCHHHHC-------CCHHHHHHHHHHHHHHHHHHHHTCEEEEEECC--
T ss_pred HHHHHCCCCCEEEEECCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHEEEC
T ss_conf 99985599878999330245608886054032328899999999999999987623716553320001
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=96.62 E-value=0.0077 Score=34.02 Aligned_cols=99 Identities=20% Similarity=0.284 Sum_probs=53.0
Q ss_pred EEEEEEECCCCCCCHHHHHHHHHHHHHHHCEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHH-HHHHHHHH--HH
Q ss_conf 3999990799981049844876565444062333799999249999999829930001662542199-99999999--83
Q 004609 352 RVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGH-ISRIVDIL--EL 428 (742)
Q Consensus 352 ~~~~ItGpNg~GKSTlLK~iGLl~~la~~G~~vpa~~~~~i~~~d~il~~ig~~~~i~~~lStlSgg-~krl~~i~--~~ 428 (742)
..+++.||-|+|||++.|.++-. .|..+. .+.. ..+. +.+.|+ ++++..+. +.
T Consensus 43 ~giLl~GppGtGKT~la~aia~~-----~~~~~~-----~i~~-~~l~-------------~~~~g~~~~~l~~~f~~a~ 98 (247)
T d1ixza_ 43 KGVLLVGPPGVGKTHLARAVAGE-----ARVPFI-----TASG-SDFV-------------EMFVGVGAARVRDLFETAK 98 (247)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH-----TTCCEE-----EEEH-HHHH-------------HSCTTHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHH-----CCCCEE-----EEEH-HHHH-------------HCCCCHHHHHHHHHHHHHH
T ss_conf 64887668988835999999987-----399779-----9786-9964-------------6245389999999999999
Q ss_pred CCCCCEEEECCC----------CCCCCHHHHHHHHHHHHHHHH---CCCC-EEEEEECCHH
Q ss_conf 699939998079----------999998989999999999983---3894-8999925823
Q 004609 429 VSRESLVLIDEI----------GSGTDPSEGVALATSILQYLR---DRVG-LAVVTTHYAD 475 (742)
Q Consensus 429 ~~~~~LiLLDEp----------~~glDp~~g~aL~~all~~l~---~~~~-~viitTH~~~ 475 (742)
...|++|++||. ..+.+.... .+...++..+. .... .+|.+|.+.+
T Consensus 99 ~~~p~Ii~iDeid~l~~~r~~~~~~~~~~~~-~~~~~ll~~~d~~~~~~~vivi~tTn~~~ 158 (247)
T d1ixza_ 99 RHAPCIVFIDEIDAVGRKRGSGVGGGNDERE-QTLNQLLVEMDGFEKDTAIVVMAATNRPD 158 (247)
T ss_dssp TSSSEEEEEETHHHHHC---------CHHHH-HHHHHHHHHHHTCCTTCCEEEEEEESCGG
T ss_pred HCCCEEEEEECHHHHCCCCCCCCCCCCHHHH-HHHHHHHHHHHCCCCCCCEEEEEECCCCC
T ss_conf 7699799997736647467899888758999-99999999963877789989998079940
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.54 E-value=0.0077 Score=34.02 Aligned_cols=104 Identities=15% Similarity=0.144 Sum_probs=56.8
Q ss_pred CCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHH-HHHHHH--
Q ss_conf 02782399999079998104984487656544406233379999924999999982993000166254219-999999--
Q 004609 347 VECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSG-HISRIV-- 423 (742)
Q Consensus 347 l~~g~~~~~ItGpNg~GKSTlLK~iGLl~~la~~G~~vpa~~~~~i~~~d~il~~ig~~~~i~~~lStlSg-g~krl~-- 423 (742)
+... ..+++.||.|+|||++.+.++-. .|.+... +.. ..+. +.+.| .+..+.
T Consensus 38 ~~~~-~giLL~Gp~GtGKT~l~~ala~~-----~~~~~~~-----~~~-~~l~-------------~~~~~~~~~~l~~~ 92 (265)
T d1r7ra3 38 MTPS-KGVLFYGPPGCGKTLLAKAIANE-----CQANFIS-----IKG-PELL-------------TMWFGESEANVREI 92 (265)
T ss_dssp CCCC-CEEEEBCCTTSSHHHHHHHHHHH-----TTCEEEE-----ECH-HHHH-------------TSCTTTHHHHHHHH
T ss_pred CCCC-CEEEEECCCCCCCHHHHHHHHHH-----HCCCEEE-----EEH-HHHH-------------HCCCCCHHHHHHHH
T ss_conf 9988-75788789987630477887877-----1894799-----887-9952-------------53165158999999
Q ss_pred HHHHHCCCCCEEEECCCCCC---------CCHHHHHHHHHHHHHHHH---C-CCCEEEEEECCHH
Q ss_conf 99983699939998079999---------998989999999999983---3-8948999925823
Q 004609 424 DILELVSRESLVLIDEIGSG---------TDPSEGVALATSILQYLR---D-RVGLAVVTTHYAD 475 (742)
Q Consensus 424 ~i~~~~~~~~LiLLDEp~~g---------lDp~~g~aL~~all~~l~---~-~~~~viitTH~~~ 475 (742)
+..+....|++|++||.-.- -...+...+...++.++. . .+..+|.||++.+
T Consensus 93 f~~A~~~~p~il~ideid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~ 157 (265)
T d1r7ra3 93 FDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPD 157 (265)
T ss_dssp HHHHHHTCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCC------CCEEEECCBSCT
T ss_pred HHHHHHCCCCCEEHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCH
T ss_conf 99998639843568754632455787678873799999999999962867779989999179922
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=96.53 E-value=0.021 Score=31.03 Aligned_cols=92 Identities=16% Similarity=0.115 Sum_probs=54.2
Q ss_pred CEEEEEEECCCCCCCHHHHHHH-HHHHHHHHCEEECCCCCCCCHHHHHHHH---HCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 2399999079998104984487-6565444062333799999249999999---82993000166254219999999999
Q 004609 351 TRVVVITGPNTGGKTASMKTLG-LASLMSKAGLYLPAKNHPRLPWFDLILA---DIGDHQSLEQNLSTFSGHISRIVDIL 426 (742)
Q Consensus 351 ~~~~~ItGpNg~GKSTlLK~iG-Ll~~la~~G~~vpa~~~~~i~~~d~il~---~ig~~~~i~~~lStlSgg~krl~~i~ 426 (742)
..+++++||+|+||||++==++ .+.-......++.++. .+++-++++-. .+|..-........+..-+++ +...
T Consensus 12 p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt-~R~ga~eQL~~~a~~l~v~~~~~~~~~~~~~~~~~-a~~~ 89 (211)
T d1j8yf2 12 PYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADV-YRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKR-GVEK 89 (211)
T ss_dssp SEEEEEECSCCC----HHHHHHHHHHHTTCCEEEEECCC-SSHHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHH-HHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEC-CCCCHHHHHHHHCCCCCCCEEECCCCHHHHHHHHH-HHHH
T ss_conf 989999899999989999999999997799369997202-35515678987401468422302441024478999-9987
Q ss_pred HHCCCCCEEEECCCCCCC
Q ss_conf 836999399980799999
Q 004609 427 ELVSRESLVLIDEIGSGT 444 (742)
Q Consensus 427 ~~~~~~~LiLLDEp~~gl 444 (742)
....+..+||+|=+|.+-
T Consensus 90 ~~~~~~d~IlIDTaGr~~ 107 (211)
T d1j8yf2 90 FLSEKMEIIIVDTAGRHG 107 (211)
T ss_dssp HHHTTCSEEEEECCCSCC
T ss_pred HHCCCCCEEEEECCCCCC
T ss_conf 402677369985377676
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=96.41 E-value=0.0096 Score=33.36 Aligned_cols=100 Identities=23% Similarity=0.236 Sum_probs=52.8
Q ss_pred EEEEEEECCCCCCCHHHHHHHHHHHHHHHCEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHH--HHHHHH--HH
Q ss_conf 39999907999810498448765654440623337999992499999998299300016625421999--999999--98
Q 004609 352 RVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHI--SRIVDI--LE 427 (742)
Q Consensus 352 ~~~~ItGpNg~GKSTlLK~iGLl~~la~~G~~vpa~~~~~i~~~d~il~~ig~~~~i~~~lStlSgg~--krl~~i--~~ 427 (742)
..+++.||-|+|||++.+.++-. .+.++-. +...+ .++.++++. +.+..+ .+
T Consensus 41 ~~vLL~GppGtGKT~la~alA~~-----~~~~~~~---------------i~~~~----~~~g~~~~~~~~~i~~if~~A 96 (246)
T d1d2na_ 41 VSVLLEGPPHSGKTALAAKIAEE-----SNFPFIK---------------ICSPD----KMIGFSETAKCQAMKKIFDDA 96 (246)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH-----HTCSEEE---------------EECGG----GCTTCCHHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHC-----CCCCCCC---------------CCCCC----CCCCCCCCCHHHHHHHHHHHH
T ss_conf 07998896999889999998620-----1002333---------------45652----235654211224444456555
Q ss_pred HCCCCCEEEECCC-----CCCCCHHHHHHHHHHHHHHHHCC---C--CEEEEEECCHH
Q ss_conf 3699939998079-----99999898999999999998338---9--48999925823
Q 004609 428 LVSRESLVLIDEI-----GSGTDPSEGVALATSILQYLRDR---V--GLAVVTTHYAD 475 (742)
Q Consensus 428 ~~~~~~LiLLDEp-----~~glDp~~g~aL~~all~~l~~~---~--~~viitTH~~~ 475 (742)
....|++|++||. .....+.....+..+++..+... + ..+|.||.+.+
T Consensus 97 ~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~tTn~~~ 154 (246)
T d1d2na_ 97 YKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKD 154 (246)
T ss_dssp HTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHH
T ss_pred HHCCCCEEEHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHH
T ss_conf 5324222331025667651345441247899999998607776545014553248832
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.34 E-value=0.025 Score=30.49 Aligned_cols=103 Identities=18% Similarity=0.275 Sum_probs=52.5
Q ss_pred EEEEEEECCCCCCCHHHHHHHHHHHHHHHCEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHH-HHHHHHHH--HHH
Q ss_conf 399999079998104984487656544406233379999924999999982993000166254219-99999999--983
Q 004609 352 RVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSG-HISRIVDI--LEL 428 (742)
Q Consensus 352 ~~~~ItGpNg~GKSTlLK~iGLl~~la~~G~~vpa~~~~~i~~~d~il~~ig~~~~i~~~lStlSg-g~krl~~i--~~~ 428 (742)
+.+++.||-|+|||++.+.++-. .+.++-.- ..+ .+ .+.+.| ....+..+ .+.
T Consensus 39 ~giLL~GppGtGKT~l~~ala~~-----~~~~~~~i---~~~---~l-------------~~~~~g~~~~~l~~~f~~A~ 94 (258)
T d1e32a2 39 RGILLYGPPGTGKTLIARAVANE-----TGAFFFLI---NGP---EI-------------MSKLAGESESNLRKAFEEAE 94 (258)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH-----TTCEEEEE---CHH---HH-------------TTSCTTHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCCHHHHHHHHHH-----HCCEEEEE---ECH---HH-------------CCCCCCCHHHHHHHHHHHHH
T ss_conf 64687669988830899999987-----48837999---730---43-------------02545617888899999998
Q ss_pred CCCCCEEEECCCCCCCCHHH------HHHHHHHHHHHHH---CC-CCEEEEEECCHHHHH
Q ss_conf 69993999807999999898------9999999999983---38-948999925823651
Q 004609 429 VSRESLVLIDEIGSGTDPSE------GVALATSILQYLR---DR-VGLAVVTTHYADLSC 478 (742)
Q Consensus 429 ~~~~~LiLLDEp~~glDp~~------g~aL~~all~~l~---~~-~~~viitTH~~~l~~ 478 (742)
...|++|++||.=.=....+ ...+...++..+. .. +..+|.+|++.+...
T Consensus 95 ~~~p~il~iDeid~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvi~tTn~~~~ld 154 (258)
T d1e32a2 95 KNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSID 154 (258)
T ss_dssp HTCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCCCSSCEEEEEEESCGGGSC
T ss_pred HCCCEEEEEHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCC
T ss_conf 649949985211132257887777068999877500110123468811797579931025
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.30 E-value=0.0011 Score=39.88 Aligned_cols=27 Identities=26% Similarity=0.442 Sum_probs=21.7
Q ss_pred CCCCCCEEEEEEECCCCCCCHHHHHHHH
Q ss_conf 0027823999990799981049844876
Q 004609 346 KVECETRVVVITGPNTGGKTASMKTLGL 373 (742)
Q Consensus 346 ~l~~g~~~~~ItGpNg~GKSTlLK~iGL 373 (742)
.+..+ .+.+|+||||+|||++|..|.+
T Consensus 21 ~f~~~-~l~~i~G~NGsGKS~ileAi~~ 47 (427)
T d1w1wa_ 21 GFGES-NFTSIIGPNGSGKSNMMDAISF 47 (427)
T ss_dssp ECTTC-SEEEEECSTTSSHHHHHHHHHH
T ss_pred ECCCC-CEEEEECCCCCCHHHHHHHHHH
T ss_conf 58999-9899999999988999999999
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.29 E-value=0.028 Score=30.10 Aligned_cols=125 Identities=16% Similarity=0.132 Sum_probs=66.4
Q ss_pred CCCCCEEEEEEECCCCCCCHHHHHHHHHHHH--HHHCEEECCCCCCCCHHHHHHHHHCCCC---------------CCCC
Q ss_conf 0278239999907999810498448765654--4406233379999924999999982993---------------0001
Q 004609 347 VECETRVVVITGPNTGGKTASMKTLGLASLM--SKAGLYLPAKNHPRLPWFDLILADIGDH---------------QSLE 409 (742)
Q Consensus 347 l~~g~~~~~ItGpNg~GKSTlLK~iGLl~~l--a~~G~~vpa~~~~~i~~~d~il~~ig~~---------------~~i~ 409 (742)
+++| .++.|.|+.|+|||++.-.+...... ...++|+.... . ...+...+...+.. ....
T Consensus 23 i~~G-~~~~I~G~~G~GKT~la~~~~~~~~~~~~~~~~~~s~e~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (242)
T d1tf7a1 23 LPIG-RSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEE-T-PQDIIKNARSFGWDLAKLVDEGKLFILDASPDP 99 (242)
T ss_dssp EETT-SEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS-C-HHHHHHHHGGGTCCHHHHHHTTSEEEEECCCCS
T ss_pred CCCC-EEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCC-C-HHHHHHHHHHCCCCHHHHHHHCCHHHHHHCCCH
T ss_conf 9698-399999479999999999999999985688742012667-9-999999999849984898871430244421033
Q ss_pred CCCCCCHHH----HH-HHHHHHHHCCCCCEEEECCCCCCC----CHHHHHHHHHHHHHHHHCCCCEEEEEECCHH
Q ss_conf 662542199----99-999999836999399980799999----9898999999999998338948999925823
Q 004609 410 QNLSTFSGH----IS-RIVDILELVSRESLVLIDEIGSGT----DPSEGVALATSILQYLRDRVGLAVVTTHYAD 475 (742)
Q Consensus 410 ~~lStlSgg----~k-rl~~i~~~~~~~~LiLLDEp~~gl----Dp~~g~aL~~all~~l~~~~~~viitTH~~~ 475 (742)
.....++.. .. ++..... -.++.++++|-...-. +..........+.....+.+.++++++|...
T Consensus 100 ~~~~~~~~~~~~~l~~~l~~~i~-~~~~~~viiD~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (242)
T d1tf7a1 100 EGQEVVGGFDLSALIERINYAIQ-KYRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIE 173 (242)
T ss_dssp SCCSCCSSHHHHHHHHHHHHHHH-HHTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSS
T ss_pred HHHHHHCCCCHHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 54444302458999999999988-631222002078899876057267899999999999863971688421025
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.03 E-value=0.033 Score=29.63 Aligned_cols=43 Identities=16% Similarity=0.126 Sum_probs=26.2
Q ss_pred CCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHH
Q ss_conf 9993999807999999898999999999998338948999925823
Q 004609 430 SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD 475 (742)
Q Consensus 430 ~~~~LiLLDEp~~glDp~~g~aL~~all~~l~~~~~~viitTH~~~ 475 (742)
....++++||.-. +.......+.. +++.... ...+|++|++.+
T Consensus 130 ~~~~iiiide~d~-l~~~~~~~l~~-~~e~~~~-~~~~Il~tn~~~ 172 (252)
T d1sxje2 130 HRYKCVIINEANS-LTKDAQAALRR-TMEKYSK-NIRLIMVCDSMS 172 (252)
T ss_dssp -CCEEEEEECTTS-SCHHHHHHHHH-HHHHSTT-TEEEEEEESCSC
T ss_pred CCCEEEEECCCCC-CCCCCCHHHHC-CCCCCCC-CCCCEEEECCCC
T ss_conf 8724999424333-45431112210-0221356-643000102111
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=95.31 E-value=0.0042 Score=35.85 Aligned_cols=102 Identities=20% Similarity=0.220 Sum_probs=55.8
Q ss_pred EEEEEEECCCCCCCHHHHHH-H-HHHHHHHHCEEECCCCCCCCHHHHHHHHHCCCCCC-C-CCCCCCCHHHHHHHHHHHH
Q ss_conf 39999907999810498448-7-65654440623337999992499999998299300-0-1662542199999999998
Q 004609 352 RVVVITGPNTGGKTASMKTL-G-LASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQS-L-EQNLSTFSGHISRIVDILE 427 (742)
Q Consensus 352 ~~~~ItGpNg~GKSTlLK~i-G-Ll~~la~~G~~vpa~~~~~i~~~d~il~~ig~~~~-i-~~~lStlSgg~krl~~i~~ 427 (742)
..++|+||-|+||||+|..+ . +.... +. .+--+..+...+ -|..|. + ...-.+|...++ ..
T Consensus 159 GliLvtGpTGSGKSTTl~~~l~~~~~~~-~~--i~tiEdPiE~~~-------~~~~q~~v~~~~~~~~~~~l~-----~~ 223 (401)
T d1p9ra_ 159 GIILVTGPTGSGKSTTLYAGLQELNSSE-RN--ILTVEDPIEFDI-------DGIGQTQVNPRVDMTFARGLR-----AI 223 (401)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHCCTT-SC--EEEEESSCCSCC-------SSSEEEECBGGGTBCHHHHHH-----HH
T ss_pred CEEEEECCCCCCCCHHHHHHHHHHCCCC-CE--EEEECCCCCCCC-------CCCCEEEECCCCCCCHHHHHH-----HH
T ss_conf 5489876787774477999866625787-46--999626743456-------788702655876779999999-----99
Q ss_pred HCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHHH
Q ss_conf 3699939998079999998989999999999983389489999258236
Q 004609 428 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL 476 (742)
Q Consensus 428 ~~~~~~LiLLDEp~~glDp~~g~aL~~all~~l~~~~~~viitTH~~~l 476 (742)
+-.+|+++++.|.- |+....+...| ...|..|+.|-|-.+.
T Consensus 224 lR~dPDvi~igEiR---d~~ta~~a~~a-----a~tGhlV~tTlHa~~a 264 (401)
T d1p9ra_ 224 LRQDPDVVMVGEIR---DLETAQIAVQA-----SLTGHLVMSTLHTNTA 264 (401)
T ss_dssp GGGCCSEEEESCCC---SHHHHHHHHHH-----HHTTCEEEEEECCSSS
T ss_pred HHHCCCEEEECCCC---CHHHHHHHHHH-----HHCCCEEEEEECCCCH
T ss_conf 84138889845768---75999999999-----7249858998336766
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=95.30 E-value=0.0041 Score=35.94 Aligned_cols=20 Identities=25% Similarity=0.326 Sum_probs=18.8
Q ss_pred EEEEEEECCCCCCCHHHHHH
Q ss_conf 39999907999810498448
Q 004609 352 RVVVITGPNTGGKTASMKTL 371 (742)
Q Consensus 352 ~~~~ItGpNg~GKSTlLK~i 371 (742)
.+++|+|++|+|||||++.+
T Consensus 3 Pvi~itG~~GSGKTTL~~~L 22 (170)
T d1np6a_ 3 PLLAFAAWSGTGKTTLLKKL 22 (170)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
T ss_conf 88999918999899999999
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=95.27 E-value=0.015 Score=32.03 Aligned_cols=21 Identities=29% Similarity=0.438 Sum_probs=18.7
Q ss_pred EEEEEEECCCCCCCHHHHHHH
Q ss_conf 399999079998104984487
Q 004609 352 RVVVITGPNTGGKTASMKTLG 372 (742)
Q Consensus 352 ~~~~ItGpNg~GKSTlLK~iG 372 (742)
..++|+||+|+||||+.+.++
T Consensus 46 ~~lll~Gp~G~GKTtla~~ia 66 (231)
T d1iqpa2 46 PHLLFAGPPGVGKTTAALALA 66 (231)
T ss_dssp CEEEEESCTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
T ss_conf 769997899974879999999
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.27 E-value=0.0045 Score=35.62 Aligned_cols=21 Identities=43% Similarity=0.786 Sum_probs=19.6
Q ss_pred CCEEEEEEECCCCCCCHHHHHH
Q ss_conf 8239999907999810498448
Q 004609 350 ETRVVVITGPNTGGKTASMKTL 371 (742)
Q Consensus 350 g~~~~~ItGpNg~GKSTlLK~i 371 (742)
| .+++|+||+|+||||+++.+
T Consensus 2 G-~iivl~GpsG~GK~tl~~~L 22 (182)
T d1znwa1 2 G-RVVVLSGPSAVGKSTVVRCL 22 (182)
T ss_dssp C-CEEEEECSTTSSHHHHHHHH
T ss_pred C-EEEEEECCCCCCHHHHHHHH
T ss_conf 7-49999899999999999999
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.27 E-value=0.0032 Score=36.68 Aligned_cols=21 Identities=38% Similarity=0.534 Sum_probs=18.9
Q ss_pred EEEEEEECCCCCCCHHHHHHH
Q ss_conf 399999079998104984487
Q 004609 352 RVVVITGPNTGGKTASMKTLG 372 (742)
Q Consensus 352 ~~~~ItGpNg~GKSTlLK~iG 372 (742)
+.+.|+||+|+||||+++.+.
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~ 22 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKAS 22 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
T ss_conf 699998899971999999999
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=95.05 E-value=0.00023 Score=44.58 Aligned_cols=31 Identities=23% Similarity=0.342 Sum_probs=24.7
Q ss_pred CCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHH
Q ss_conf 155300278239999907999810498448765
Q 004609 342 PIDIKVECETRVVVITGPNTGGKTASMKTLGLA 374 (742)
Q Consensus 342 ~vsl~l~~g~~~~~ItGpNg~GKSTlLK~iGLl 374 (742)
+.++.+.++ +.+|+||||+||||+|..|.++
T Consensus 17 ~~~i~f~~~--~tvi~G~NGsGKStil~Ai~~~ 47 (222)
T d1qhla_ 17 ARTFDLDEL--VTTLSGGNGAGKSTTMAAFVTA 47 (222)
T ss_dssp EEEECHHHH--HHHHHSCCSHHHHHHHHHHHHH
T ss_pred EEEEECCCC--EEEEECCCCCCHHHHHHHHHHH
T ss_conf 279974998--0899889999879999999999
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.89 E-value=0.0096 Score=33.35 Aligned_cols=24 Identities=29% Similarity=0.328 Sum_probs=19.6
Q ss_pred EEEEEEECCCCCCCHHHHHH-HHHH
Q ss_conf 39999907999810498448-7656
Q 004609 352 RVVVITGPNTGGKTASMKTL-GLAS 375 (742)
Q Consensus 352 ~~~~ItGpNg~GKSTlLK~i-GLl~ 375 (742)
++++|+|++|+|||||+.-+ ..+.
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~ 26 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAV 26 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 0999980999989999999999998
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=94.85 E-value=0.09 Score=26.61 Aligned_cols=128 Identities=15% Similarity=0.116 Sum_probs=58.8
Q ss_pred CCCCCEEEEEEECCCCCCCHHHHHHHHHHHHH-------HHCEEECCCCCCCCHHHHHHHHHCCCCCC-C---CCCCCCC
Q ss_conf 02782399999079998104984487656544-------40623337999992499999998299300-0---1662542
Q 004609 347 VECETRVVVITGPNTGGKTASMKTLGLASLMS-------KAGLYLPAKNHPRLPWFDLILADIGDHQS-L---EQNLSTF 415 (742)
Q Consensus 347 l~~g~~~~~ItGpNg~GKSTlLK~iGLl~~la-------~~G~~vpa~~~~~i~~~d~il~~ig~~~~-i---~~~lStl 415 (742)
+++| +++.|.||.|+||||+.-.+.....+. ....++..........+......++...+ . ......+
T Consensus 33 lp~G-~~~li~G~pGsGKT~~~lq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (254)
T d1pzna2 33 IETQ-AITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAF 111 (254)
T ss_dssp EESS-EEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHHTTTCCHHHHGGGEEEEECC
T ss_pred CCCC-EEEEEECCCCCCHHHHHHHHHHHHHCHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC
T ss_conf 5588-799998589898899999999986344876388962899831012589999999986588857766443432210
Q ss_pred HHHH------HHHHHHHH---HCCCCCEEEECCCCCCCCH---------HHH---HHHHHHHHHHHHCCCCEEEEEECCH
Q ss_conf 1999------99999998---3699939998079999998---------989---9999999999833894899992582
Q 004609 416 SGHI------SRIVDILE---LVSRESLVLIDEIGSGTDP---------SEG---VALATSILQYLRDRVGLAVVTTHYA 474 (742)
Q Consensus 416 Sgg~------krl~~i~~---~~~~~~LiLLDEp~~glDp---------~~g---~aL~~all~~l~~~~~~viitTH~~ 474 (742)
.... ........ ....+.++++|-.+.-... ... ......+.........++++++|..
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viDs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 191 (254)
T d1pzna2 112 NSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQ 191 (254)
T ss_dssp SHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHEEEHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCEEE
T ss_conf 21168899876666658998642584268603112101023306630334678999999998887530206999622676
Q ss_pred H
Q ss_conf 3
Q 004609 475 D 475 (742)
Q Consensus 475 ~ 475 (742)
.
T Consensus 192 ~ 192 (254)
T d1pzna2 192 A 192 (254)
T ss_dssp -
T ss_pred E
T ss_conf 0
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.69 E-value=0.038 Score=29.25 Aligned_cols=20 Identities=30% Similarity=0.507 Sum_probs=18.3
Q ss_pred EEEEEECCCCCCCHHHHHHH
Q ss_conf 99999079998104984487
Q 004609 353 VVVITGPNTGGKTASMKTLG 372 (742)
Q Consensus 353 ~~~ItGpNg~GKSTlLK~iG 372 (742)
.++++||.|+||||+.+.++
T Consensus 35 ~lll~Gp~G~GKTtl~~~i~ 54 (237)
T d1sxjd2 35 HMLFYGPPGTGKTSTILALT 54 (237)
T ss_dssp CEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 59998999998499999999
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.66 E-value=0.1 Score=26.24 Aligned_cols=97 Identities=21% Similarity=0.248 Sum_probs=48.3
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHH---HHHHCEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHH--
Q ss_conf 999990799981049844876565---444062333799999249999999829930001662542199999999998--
Q 004609 353 VVVITGPNTGGKTASMKTLGLASL---MSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILE-- 427 (742)
Q Consensus 353 ~~~ItGpNg~GKSTlLK~iGLl~~---la~~G~~vpa~~~~~i~~~d~il~~ig~~~~i~~~lStlSgg~krl~~i~~-- 427 (742)
.+++.||.|+||||+.+.++--.. ...............+..... .......
T Consensus 37 ~lLl~Gp~G~GKttl~~~la~~l~~~~~~~~~~e~~~~~~~~~~~~~~-----------------------~~~~~~~~~ 93 (227)
T d1sxjc2 37 HLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVRN-----------------------QIKDFASTR 93 (227)
T ss_dssp CEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSHHHHHT-----------------------HHHHHHHBC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCEEEEEC-----------------------CHHHCCCCC
T ss_conf 599988998775589999999851677764157731555687543210-----------------------001011100
Q ss_pred --HCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHH
Q ss_conf --369993999807999999898999999999998338948999925823
Q 004609 428 --LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD 475 (742)
Q Consensus 428 --~~~~~~LiLLDEp~~glDp~~g~aL~~all~~l~~~~~~viitTH~~~ 475 (742)
...+..++++||.- .+.+....+|.. +++.... ...++++|+...
T Consensus 94 ~~~~~~~kiiiiDe~d-~~~~~~~~~Ll~-~le~~~~-~~~~~~~~~~~~ 140 (227)
T d1sxjc2 94 QIFSKGFKLIILDEAD-AMTNAAQNALRR-VIERYTK-NTRFCVLANYAH 140 (227)
T ss_dssp CSSSCSCEEEEETTGG-GSCHHHHHHHHH-HHHHTTT-TEEEEEEESCGG
T ss_pred CCCCCCEEEEEEECCC-CCHHHHHHHHHH-HHHHCCC-CEEECCCCCCHH
T ss_conf 0257771899996632-000237899998-8631120-023201267087
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=94.66 E-value=0.016 Score=31.80 Aligned_cols=101 Identities=20% Similarity=0.208 Sum_probs=52.0
Q ss_pred EEEEEEECCCCCCCHHHHHHHHHHHHHHHCEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 39999907999810498448765654440623337999992499999998299300016625421999999999983699
Q 004609 352 RVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSR 431 (742)
Q Consensus 352 ~~~~ItGpNg~GKSTlLK~iGLl~~la~~G~~vpa~~~~~i~~~d~il~~ig~~~~i~~~lStlSgg~krl~~i~~~~~~ 431 (742)
.+++++||-|+|||.+-+.++-- +|.-+| .+. +...+.+.+....| ++++..+...+..
T Consensus 124 g~~l~~G~pG~GKT~la~ala~~-----~~~~~~-----~~~--------~~~~~~~~~~~G~~---e~~~~~~f~~a~~ 182 (321)
T d1w44a_ 124 GMVIVTGKGNSGKTPLVHALGEA-----LGGKDK-----YAT--------VRFGEPLSGYNTDF---NVFVDDIARAMLQ 182 (321)
T ss_dssp EEEEEECSSSSCHHHHHHHHHHH-----HHTTSC-----CEE--------EEBSCSSTTCBCCH---HHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH-----HCCCCC-----EEE--------EEHHHHHHCCCCHH---HHHHHHHHHHHHH
T ss_conf 63888779985088999999998-----637998-----089--------78268544244457---8999999999862
Q ss_pred CCEEEECCCCC-------CCCHHHHHHHHHHHHHHH---H-CCCCEEEEEECC
Q ss_conf 93999807999-------999898999999999998---3-389489999258
Q 004609 432 ESLVLIDEIGS-------GTDPSEGVALATSILQYL---R-DRVGLAVVTTHY 473 (742)
Q Consensus 432 ~~LiLLDEp~~-------glDp~~g~aL~~all~~l---~-~~~~~viitTH~ 473 (742)
+++|++||.-+ +.+..........++..+ . ..+..+|.+|.-
T Consensus 183 ~~ilf~DEid~~~~~r~~~~~~~~~~r~v~~lL~e~dg~~~~~~v~viaatN~ 235 (321)
T d1w44a_ 183 HRVIVIDSLKNVIGAAGGNTTSGGISRGAFDLLSDIGAMAASRGCVVIASLNP 235 (321)
T ss_dssp CSEEEEECCTTTC-----------CCHHHHHHHHHHHHHHHHHTCEEEEECCC
T ss_pred CCEEEEEHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEECCC
T ss_conf 65897410122212345678987413345156652035566788499983797
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=94.45 E-value=0.092 Score=26.55 Aligned_cols=99 Identities=14% Similarity=0.191 Sum_probs=46.7
Q ss_pred CCCEEEEEEECCCCCCCHHHHHHHHH-HHHHHHCEEECCCCCCCCH---H-HHHHH-HHCCCCCCCC-CCCC--CCHHHH
Q ss_conf 78239999907999810498448765-6544406233379999924---9-99999-9829930001-6625--421999
Q 004609 349 CETRVVVITGPNTGGKTASMKTLGLA-SLMSKAGLYLPAKNHPRLP---W-FDLIL-ADIGDHQSLE-QNLS--TFSGHI 419 (742)
Q Consensus 349 ~g~~~~~ItGpNg~GKSTlLK~iGLl-~~la~~G~~vpa~~~~~i~---~-~d~il-~~ig~~~~i~-~~lS--tlSgg~ 419 (742)
+. .+++||||.|+|||||+..++.. .-..+....+.-++.+.+. + -|++- ...+....+. ++.. ...||.
T Consensus 53 ~~-~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vavlavDpss~~~ggailgdr~rm~~~~~~~~~~ir~~~~~g~lgg~ 131 (327)
T d2p67a1 53 NT-LRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGA 131 (327)
T ss_dssp CS-EEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----CH
T ss_pred CC-EEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf 83-28974389999899999999999975698332203777610006515541367887405654101565553444420
Q ss_pred -HHHHHH--HHHCCCCCEEEECCCCCCCCHHH
Q ss_conf -999999--98369993999807999999898
Q 004609 420 -SRIVDI--LELVSRESLVLIDEIGSGTDPSE 448 (742)
Q Consensus 420 -krl~~i--~~~~~~~~LiLLDEp~~glDp~~ 448 (742)
.....+ +.-+.+..++|+.-.|.|..+.+
T Consensus 132 ~~~~~~~~~~~~~~g~d~iliEtvG~gq~e~~ 163 (327)
T d2p67a1 132 SQRARELMLLCEAAGYDVVIVETVGVGQSETE 163 (327)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEEECCTTHHHH
T ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCCCCHH
T ss_conf 33205789998864998278750321121023
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=94.39 E-value=0.025 Score=30.48 Aligned_cols=128 Identities=21% Similarity=0.256 Sum_probs=67.3
Q ss_pred CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCEEECCCC-CCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 7823999990799981049844876565444062333799-999249999999829930001662542199999999998
Q 004609 349 CETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKN-HPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILE 427 (742)
Q Consensus 349 ~g~~~~~ItGpNg~GKSTlLK~iGLl~~la~~G~~vpa~~-~~~i~~~d~il~~ig~~~~i~~~lStlSgg~krl~~i~~ 427 (742)
+...-.+|+||-|.|||+++.-++.- +.. | -+|... ...+ +. +. -.++-.+.+....-+.++..++.
T Consensus 37 ~~k~n~lLVG~~GvGKTalv~~la~r--i~~-~-~vp~~l~~~~i--~~-----l~-~~~liag~~~~g~~e~r~~~i~~ 104 (268)
T d1r6bx2 37 RRKNNPLLVGESGVGKTAIAEGLAWR--IVQ-G-DVPEVMADCTI--YS-----LD-IGSLLAGTKYRGDFEKRFKALLK 104 (268)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHHH--HHH-T-CSCGGGTTCEE--EE-----CC-CC---CCCCCSSCHHHHHHHHHH
T ss_pred CCCCCCEEECCCCCCHHHHHHHHHHH--HHH-C-CCCCCCCCCEE--EE-----EE-ECHHHCCCCCCHHHHHHHHHHHH
T ss_conf 76689679888988677999999999--981-7-84500035412--78-----64-05675067630058999999999
Q ss_pred H-C-CCCCEEEECCCCC----CCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCCCCCEEC
Q ss_conf 3-6-9993999807999----9998989999999999983389489999258236510254531106
Q 004609 428 L-V-SRESLVLIDEIGS----GTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFEN 488 (742)
Q Consensus 428 ~-~-~~~~LiLLDEp~~----glDp~~g~aL~~all~~l~~~~~~viitTH~~~l~~~a~~~~~i~~ 488 (742)
. . .++.++.+||+-. |-...+...++..+.-+|....-.+|.+|...+...+......+..
T Consensus 105 ~~~~~~~iIlfiDeih~l~~~g~~~g~~~d~a~~Lkp~L~rg~i~vIgatT~eey~~~~e~d~al~r 171 (268)
T d1r6bx2 105 QLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALAR 171 (268)
T ss_dssp HHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSSCCCEEEEEECHHHHHCCCCCTTSSGG
T ss_pred HHHCCCCCEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCHHHHH
T ss_conf 8612678468843369886277778864117987648874798759995799999999861678886
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=94.32 E-value=0.012 Score=32.58 Aligned_cols=108 Identities=15% Similarity=0.166 Sum_probs=51.7
Q ss_pred CCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCEEECCCCCCCCHHHHHHHH-HCCCCCCCC--CCCCCCHHHHHHHHH
Q ss_conf 27823999990799981049844876565444062333799999249999999-829930001--662542199999999
Q 004609 348 ECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILA-DIGDHQSLE--QNLSTFSGHISRIVD 424 (742)
Q Consensus 348 ~~g~~~~~ItGpNg~GKSTlLK~iGLl~~la~~G~~vpa~~~~~i~~~d~il~-~ig~~~~i~--~~lStlSgg~krl~~ 424 (742)
..+ ..++|+||-|+||||+|+.+ .+. +|... ++-.++.... .+.....+- ..-..++ +..+..
T Consensus 164 ~~~-~nili~G~tgSGKTT~l~al--------~~~-i~~~~--rivtiEd~~El~l~~~~~~~~~~~~~~~~--~~~ll~ 229 (323)
T d1g6oa_ 164 AIG-KNVIVCGGTGSGKTTYIKSI--------MEF-IPKEE--RIISIEDTEEIVFKHHKNYTQLFFGGNIT--SADCLK 229 (323)
T ss_dssp HHT-CCEEEEESTTSSHHHHHHHH--------GGG-SCTTC--CEEEEESSCCCCCSSCSSEEEEECBTTBC--HHHHHH
T ss_pred HHC-CCEEEEEECCCCCHHHHHHH--------HHH-CCCCC--CEEECCCHHHHHCCCCCCCCEECCCCCHH--HHHHHH
T ss_conf 837-88899940356625789998--------653-01456--23311322655111124541001465424--999999
Q ss_pred HHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHH
Q ss_conf 998369993999807999999898999999999998338948999925823651
Q 004609 425 ILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSC 478 (742)
Q Consensus 425 i~~~~~~~~LiLLDEp~~glDp~~g~aL~~all~~l~~~~~~viitTH~~~l~~ 478 (742)
..+-.+|+.+++.|.-. +.. ..+.. .+...+..++.|.|-.....
T Consensus 230 -~~lR~~pd~iivgEiR~---~ea-~~~l~----a~~tGh~g~~tT~Ha~s~~~ 274 (323)
T d1g6oa_ 230 -SCLRMRPDRIILGELRS---SEA-YDFYN----VLCSGHKGTLTTLHAGSSEE 274 (323)
T ss_dssp -HHTTSCCSEEEESCCCS---THH-HHHHH----HHHTTCSCEEEEECCSSHHH
T ss_pred -HHHCCCCCCCCCCCCCC---HHH-HHHHH----HHHHCCCCEEEEECCCCHHH
T ss_conf -97434998545786674---659-99999----99816985799878799999
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.19 E-value=0.085 Score=26.80 Aligned_cols=109 Identities=14% Similarity=0.179 Sum_probs=49.5
Q ss_pred EEEEEEECCCCCCCHHHHHHHHHHHHHHHCE---EECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 3999990799981049844876565444062---3337999992499999998299300016625421999999999983
Q 004609 352 RVVVITGPNTGGKTASMKTLGLASLMSKAGL---YLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILEL 428 (742)
Q Consensus 352 ~~~~ItGpNg~GKSTlLK~iGLl~~la~~G~---~vpa~~~~~i~~~d~il~~ig~~~~i~~~lStlSgg~krl~~i~~~ 428 (742)
..++|.||.|+||||+.+.++-. +++ .+..........++......-.. ......+.. .......
T Consensus 53 ~~lll~GPpG~GKTt~a~~la~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~----~~~~~~~ 120 (253)
T d1sxja2 53 RAAMLYGPPGIGKTTAAHLVAQE-----LGYDILEQNASDVRSKTLLNAGVKNALDN---MSVVGYFKH----NEEAQNL 120 (253)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH-----TTCEEEEECTTSCCCHHHHHHTGGGGTTB---CCSTTTTTC--------CCS
T ss_pred CEEEEECCCCCCHHHHHHHHHHH-----HHHHHHCCCCCCCHHHHHHHHHHHHHHHC---CHHHHHHHH----HHHCCCC
T ss_conf 44999879999888999999999-----87512013443221168899999887631---212101334----3201455
Q ss_pred CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCH
Q ss_conf 6999399980799999989899999999999833894899992582
Q 004609 429 VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYA 474 (742)
Q Consensus 429 ~~~~~LiLLDEp~~glDp~~g~aL~~all~~l~~~~~~viitTH~~ 474 (742)
-....++++||.-.-+.-. ...+.. +.+........+++++.+.
T Consensus 121 ~~~~~vi~ide~~~~~~~~-~~~~~~-~~~~~~~~~~~ii~i~~~~ 164 (253)
T d1sxja2 121 NGKHFVIIMDEVDGMSGGD-RGGVGQ-LAQFCRKTSTPLILICNER 164 (253)
T ss_dssp STTSEEEEECSGGGCCTTS-TTHHHH-HHHHHHHCSSCEEEEESCT
T ss_pred CCCCEEEEEEECCCCCCCH-HHHHHH-HHHHHCCCCCCCCCCCCCC
T ss_conf 6651377763011111000-134677-7654012342221113555
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=94.13 E-value=0.13 Score=25.45 Aligned_cols=90 Identities=18% Similarity=0.222 Sum_probs=48.2
Q ss_pred EEEEEEECCCCCCCHHHHHHHHHHHHHHHCEEECCCCCCCCHHHHHHHHHCCCCCCCC---CCCCCCHHHHH-H-HHHHH
Q ss_conf 3999990799981049844876565444062333799999249999999829930001---66254219999-9-99999
Q 004609 352 RVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLE---QNLSTFSGHIS-R-IVDIL 426 (742)
Q Consensus 352 ~~~~ItGpNg~GKSTlLK~iGLl~~la~~G~~vpa~~~~~i~~~d~il~~ig~~~~i~---~~lStlSgg~k-r-l~~i~ 426 (742)
..++++||.|.|||.+.|+++-+.. .-++-.+ ++ .+...+++. .....+.|... . +.. .
T Consensus 53 ~~~lf~Gp~GvGKT~lak~la~~l~----~~~i~~d----~s-------~~~~~~~~~~l~g~~~gy~g~~~~~~l~~-~ 116 (315)
T d1r6bx3 53 GSFLFAGPTGVGKTEVTVQLSKALG----IELLRFD----MS-------EYMERHTVSRLIGAPPGYVGFDQGGLLTD-A 116 (315)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHT----CEEEEEE----GG-------GCSSSSCCSSSCCCCSCSHHHHHTTHHHH-H
T ss_pred EEEEEECCCCCHHHHHHHHHHHHCC----CCEEEEC----CC-------CCCCHHHHHHHCCCCCCCCCCCCCCHHHH-H
T ss_conf 5899977875006999999986336----7706741----54-------44554466652146787501146870337-7
Q ss_pred HHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 836999399980799999989899999999999
Q 004609 427 ELVSRESLVLIDEIGSGTDPSEGVALATSILQY 459 (742)
Q Consensus 427 ~~~~~~~LiLLDEp~~glDp~~g~aL~~all~~ 459 (742)
....+.+++++||.-.. +|.-...+.. +++.
T Consensus 117 ~~~~~~~vvl~DeieKa-~~~V~~~lLq-ild~ 147 (315)
T d1r6bx3 117 VIKHPHAVLLLDEIEKA-HPDVFNILLQ-VMDN 147 (315)
T ss_dssp HHHCSSEEEEEETGGGS-CHHHHHHHHH-HHHH
T ss_pred HHHCCCCHHHHCCCCCC-CCHHHHHHHH-HHCC
T ss_conf 77385430221222301-6337665677-6214
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=94.11 E-value=0.13 Score=25.43 Aligned_cols=116 Identities=17% Similarity=0.088 Sum_probs=56.1
Q ss_pred CCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCEEECCCCCCCCHHHHHHHHHC----CC--------CCCCCCCCCCC
Q ss_conf 2782399999079998104984487656544406233379999924999999982----99--------30001662542
Q 004609 348 ECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADI----GD--------HQSLEQNLSTF 415 (742)
Q Consensus 348 ~~g~~~~~ItGpNg~GKSTlLK~iGLl~~la~~G~~vpa~~~~~i~~~d~il~~i----g~--------~~~i~~~lStl 415 (742)
..++++.+|.+|-|+|||+.+-.+ +.-.....++++- .....+++...+ +. ..........+
T Consensus 5 ~~~~~~~ll~apTGsGKT~~~~~~--~~~~~~~vli~~P----~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (136)
T d1a1va1 5 PQSFQVAHLHAPTGSGKSTKVPAA--YAAQGYKVLVLNP----SVAATLGFGAYMSKAHGVDPNIRTGVRTITTGSPITY 78 (136)
T ss_dssp CSSCEEEEEECCTTSCTTTHHHHH--HHTTTCCEEEEES----CHHHHHHHHHHHHHHHSCCCEEECSSCEECCCCSEEE
T ss_pred CCCCCEEEEEECCCCCHHHHHHHH--HHHCCCCEEEECC----HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEE
T ss_conf 667888999968877999999999--9986993999767----6999999999999985202464300122113442278
Q ss_pred HHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCC-EEEEEE
Q ss_conf 19999999999836999399980799999989899999999999833894-899992
Q 004609 416 SGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVG-LAVVTT 471 (742)
Q Consensus 416 Sgg~krl~~i~~~~~~~~LiLLDEp~~glDp~~g~aL~~all~~l~~~~~-~viitT 471 (742)
+..............+-++|++||.= .++......+.. +++.+...+. .++..|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~vIiDE~H-~~~~~~~~~~~~-~l~~~~~~~~~~~l~~T 133 (136)
T d1a1va1 79 STYGKFLADGGCSGGAYDIIICDECH-STDATSILGIGT-VLDQAETAGARLVVLAT 133 (136)
T ss_dssp EEHHHHHHTTGGGGCCCSEEEEETTT-CCSHHHHHHHHH-HHHHTTTTTCSEEEEEE
T ss_pred EEEEEECCCCCHHHHCCCEEEEECCC-CCCHHHHHHHHH-HHHHHHHCCCCCEEEEE
T ss_conf 86410002353024159999982555-358878999999-99999877997299992
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.05 E-value=0.014 Score=32.23 Aligned_cols=22 Identities=18% Similarity=0.490 Sum_probs=20.1
Q ss_pred CCCEEEEEEECCCCCCCHHHHHH
Q ss_conf 78239999907999810498448
Q 004609 349 CETRVVVITGPNTGGKTASMKTL 371 (742)
Q Consensus 349 ~g~~~~~ItGpNg~GKSTlLK~i 371 (742)
.| .+++|+||.|+||||+++.+
T Consensus 1 ~G-~livi~GPSG~GK~tl~~~L 22 (205)
T d1s96a_ 1 QG-TLYIVSAPSGAGKSSLIQAL 22 (205)
T ss_dssp CC-CEEEEECCTTSCHHHHHHHH
T ss_pred CC-EEEEEECCCCCCHHHHHHHH
T ss_conf 98-09999999999999999999
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.92 E-value=0.026 Score=30.39 Aligned_cols=22 Identities=23% Similarity=0.489 Sum_probs=20.1
Q ss_pred CCCEEEEEEECCCCCCCHHHHHH
Q ss_conf 78239999907999810498448
Q 004609 349 CETRVVVITGPNTGGKTASMKTL 371 (742)
Q Consensus 349 ~g~~~~~ItGpNg~GKSTlLK~i 371 (742)
+| .+++|.|+.|+||||+.+.+
T Consensus 2 rG-~lI~ieG~dGsGKsT~~~~L 23 (209)
T d1nn5a_ 2 RG-ALIVLEGVDRAGKSTQSRKL 23 (209)
T ss_dssp CC-CEEEEEESTTSSHHHHHHHH
T ss_pred CE-EEEEEECCCCCCHHHHHHHH
T ss_conf 80-59999899888999999999
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=93.78 E-value=0.15 Score=25.02 Aligned_cols=117 Identities=16% Similarity=0.073 Sum_probs=54.2
Q ss_pred EEEEEEECCCCCCCHHHHHHHHHHHHHHHCEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCC-HHH-HHHHHHHHHH-
Q ss_conf 3999990799981049844876565444062333799999249999999829930001662542-199-9999999983-
Q 004609 352 RVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTF-SGH-ISRIVDILEL- 428 (742)
Q Consensus 352 ~~~~ItGpNg~GKSTlLK~iGLl~~la~~G~~vpa~~~~~i~~~d~il~~ig~~~~i~~~lStl-Sgg-~krl~~i~~~- 428 (742)
..++|.||+|.||||+.+.+.-... ...+ ...........+..+...- ..+.++-+.+.. +.+ .+++..-...
T Consensus 35 ~~~Ll~Gp~G~GKtt~a~~~~~~l~-~~~~--~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~i~~ir~~~~~~~~~ 110 (239)
T d1njfa_ 35 HAYLFSGTRGVGKTSIARLLAKGLN-CETG--ITATPCGVCDNCREIEQGR-FVDLIEIDAASRTKVEDTRDLLDNVQYA 110 (239)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHH-CTTC--SCSSCCSCSHHHHHHHHTC-CTTEEEEETTCSSSHHHHHHHHHSCCCS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHC-CCCC--CCCCCCCCCHHHHHHHCCC-CCEEEEECCHHCCCHHHHHHHHHHHHHC
T ss_conf 0598888998758999999999846-8556--6667555424799997479-8707996112007899999999999746
Q ss_pred --CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHH
Q ss_conf --69993999807999999898999999999998338948999925823
Q 004609 429 --VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD 475 (742)
Q Consensus 429 --~~~~~LiLLDEp~~glDp~~g~aL~~all~~l~~~~~~viitTH~~~ 475 (742)
-.+..++++||.-. +++....+|.. +++.. .....+|++|++..
T Consensus 111 ~~~~~~kviiIde~d~-l~~~~q~~Llk-~lE~~-~~~~~~il~tn~~~ 156 (239)
T d1njfa_ 111 PARGRFKVYLIDEVHM-LSRHSFNALLK-TLEEP-PEHVKFLLATTDPQ 156 (239)
T ss_dssp CSSSSSEEEEEETGGG-SCHHHHHHHHH-HHHSC-CTTEEEEEEESCGG
T ss_pred CCCCCCEEEEEECCCC-CCHHHHHHHHH-HHHCC-CCCEEEEEECCCCC
T ss_conf 5259987999978110-89999999999-98568-98869999738856
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=93.74 E-value=0.016 Score=31.82 Aligned_cols=19 Identities=32% Similarity=0.485 Sum_probs=18.1
Q ss_pred EEEEEECCCCCCCHHHHHH
Q ss_conf 9999907999810498448
Q 004609 353 VVVITGPNTGGKTASMKTL 371 (742)
Q Consensus 353 ~~~ItGpNg~GKSTlLK~i 371 (742)
+++|+||-|+|||||++.+
T Consensus 2 vi~v~G~~GsGKTTLl~~l 20 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEF 20 (244)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
T ss_conf 8999918998399999999
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=93.69 E-value=0.16 Score=24.92 Aligned_cols=118 Identities=13% Similarity=0.111 Sum_probs=61.5
Q ss_pred CEEEEEEECCCCCCCHHHHHHHH-----HHHHHHHCEEECCCCCCCCHH----HHHHHHHCCCCCCCCC--CCCCCHHHH
Q ss_conf 23999990799981049844876-----565444062333799999249----9999998299300016--625421999
Q 004609 351 TRVVVITGPNTGGKTASMKTLGL-----ASLMSKAGLYLPAKNHPRLPW----FDLILADIGDHQSLEQ--NLSTFSGHI 419 (742)
Q Consensus 351 ~~~~~ItGpNg~GKSTlLK~iGL-----l~~la~~G~~vpa~~~~~i~~----~d~il~~ig~~~~i~~--~lStlSgg~ 419 (742)
..+++|.|+-|.||||+.+.+-- ......+..++...+...... ...+....+..+.... .......-.
T Consensus 44 ~~~v~I~GmgGiGKTtLA~~v~~~~~~~~~~~f~~~~Wv~vs~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (277)
T d2a5yb3 44 SFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTSVVL 123 (277)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHHHTTTSCCTTCCCCTTCCHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCHHHCCCCCCHHHHHHHH
T ss_conf 40899977997888999999998556554012764899993687777789999999998722022027863212336999
Q ss_pred HHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHH
Q ss_conf 999999983699939998079999998989999999999983389489999258236510
Q 004609 420 SRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCL 479 (742)
Q Consensus 420 krl~~i~~~~~~~~LiLLDEp~~glDp~~g~aL~~all~~l~~~~~~viitTH~~~l~~~ 479 (742)
.+......+...+.|++||..- ++ ..+ +++...++.+|+||-+..+...
T Consensus 124 ~~~~~~~~L~~kr~LlVLDDv~---~~---~~~-----~~~~~~~srilvTTR~~~v~~~ 172 (277)
T d2a5yb3 124 KRMICNALIDRPNTLFVFDDVV---QE---ETI-----RWAQELRLRCLVTTRDVEISNA 172 (277)
T ss_dssp HHHHHHHHTTSTTEEEEEEEEC---CH---HHH-----HHHHHTTCEEEEEESBGGGGGG
T ss_pred HHHHHHHHHCCCCEEEECCHHH---HH---HHH-----HHHCCCCCEEEEEEEHHHHHHH
T ss_conf 9999999844688167525066---77---665-----5520457559999644899986
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=93.63 E-value=0.021 Score=31.01 Aligned_cols=22 Identities=23% Similarity=0.413 Sum_probs=20.1
Q ss_pred CEEEEEEECCCCCCCHHHHHHH
Q ss_conf 2399999079998104984487
Q 004609 351 TRVVVITGPNTGGKTASMKTLG 372 (742)
Q Consensus 351 ~~~~~ItGpNg~GKSTlLK~iG 372 (742)
..+++|+||.|+||||+.+.++
T Consensus 6 ~~iivl~G~~GsGKsT~a~~La 27 (171)
T d1knqa_ 6 HHIYVLMGVSGSGKSAVASEVA 27 (171)
T ss_dssp SEEEEEECSTTSCHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
T ss_conf 7189998999989899999999
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=93.60 E-value=0.021 Score=30.95 Aligned_cols=22 Identities=18% Similarity=0.419 Sum_probs=20.0
Q ss_pred CCCEEEEEEECCCCCCCHHHHHH
Q ss_conf 78239999907999810498448
Q 004609 349 CETRVVVITGPNTGGKTASMKTL 371 (742)
Q Consensus 349 ~g~~~~~ItGpNg~GKSTlLK~i 371 (742)
.| ++++|+||.|+||||+.+.+
T Consensus 3 ~g-~iI~l~G~~GsGKSTia~~L 24 (176)
T d1zp6a1 3 GG-NILLLSGHPGSGKSTIAEAL 24 (176)
T ss_dssp TT-EEEEEEECTTSCHHHHHHHH
T ss_pred CC-EEEEEECCCCCCHHHHHHHH
T ss_conf 98-59999889999889999999
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.45 E-value=0.17 Score=24.64 Aligned_cols=127 Identities=14% Similarity=0.123 Sum_probs=61.0
Q ss_pred CCCCCEEEEEEECCCCCCCHHHHHHHHHHHHH-H------HCEEECCCCCCCCHHHHHHHHHCCCCCCC----CCCCCCC
Q ss_conf 02782399999079998104984487656544-4------06233379999924999999982993000----1662542
Q 004609 347 VECETRVVVITGPNTGGKTASMKTLGLASLMS-K------AGLYLPAKNHPRLPWFDLILADIGDHQSL----EQNLSTF 415 (742)
Q Consensus 347 l~~g~~~~~ItGpNg~GKSTlLK~iGLl~~la-~------~G~~vpa~~~~~i~~~d~il~~ig~~~~i----~~~lStl 415 (742)
+++| .++.|.||.|+|||++.-++...+... . ...+..............+....+..... ......+
T Consensus 34 ip~G-~~~~i~G~~GsGKT~lalq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (258)
T d1v5wa_ 34 IESM-AITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAY 112 (258)
T ss_dssp BCSS-EEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCC-EEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCC
T ss_conf 7689-799998899887889999999999744431666624887401777789999998755163301223113433458
Q ss_pred HH----HHH-HHHHHH-HHCCCCCEEEECCCCCCCC--------HHHH----HHHHHHHHHHHHCCCCEEEEEECCH
Q ss_conf 19----999-999999-8369993999807999999--------8989----9999999999833894899992582
Q 004609 416 SG----HIS-RIVDIL-ELVSRESLVLIDEIGSGTD--------PSEG----VALATSILQYLRDRVGLAVVTTHYA 474 (742)
Q Consensus 416 Sg----g~k-rl~~i~-~~~~~~~LiLLDEp~~glD--------p~~g----~aL~~all~~l~~~~~~viitTH~~ 474 (742)
+. ... .+.... .......++.+|-...-.. .... ..+...+.......+.+++++.|..
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~vid~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~ 189 (258)
T d1v5wa_ 113 TSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMT 189 (258)
T ss_dssp STTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC-
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEE
T ss_conf 68889998999998866412574189853023332024567762057899999999999998986297799951475
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=93.28 E-value=0.021 Score=30.98 Aligned_cols=20 Identities=40% Similarity=0.461 Sum_probs=19.1
Q ss_pred EEEEEEECCCCCCCHHHHHH
Q ss_conf 39999907999810498448
Q 004609 352 RVVVITGPNTGGKTASMKTL 371 (742)
Q Consensus 352 ~~~~ItGpNg~GKSTlLK~i 371 (742)
++++|+||.|+||||+.+.+
T Consensus 2 kiI~i~G~~GsGKsT~~~~L 21 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLA 21 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
T ss_conf 88999899998989999999
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=93.16 E-value=0.025 Score=30.49 Aligned_cols=20 Identities=15% Similarity=0.399 Sum_probs=18.3
Q ss_pred EEEEEEECCCCCCCHHHHHH
Q ss_conf 39999907999810498448
Q 004609 352 RVVVITGPNTGGKTASMKTL 371 (742)
Q Consensus 352 ~~~~ItGpNg~GKSTlLK~i 371 (742)
++++|+||.|+||||+.+.+
T Consensus 3 klIii~G~pGsGKTTla~~L 22 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREF 22 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHH
T ss_conf 79999899999999999999
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=93.16 E-value=0.063 Score=27.69 Aligned_cols=102 Identities=14% Similarity=0.194 Sum_probs=59.7
Q ss_pred EEEEEEECCCCCCCHHHHHHHHHHHH-HHHCEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 39999907999810498448765654-44062333799999249999999829930001662542199999999998369
Q 004609 352 RVVVITGPNTGGKTASMKTLGLASLM-SKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVS 430 (742)
Q Consensus 352 ~~~~ItGpNg~GKSTlLK~iGLl~~l-a~~G~~vpa~~~~~i~~~d~il~~ig~~~~i~~~lStlSgg~krl~~i~~~~~ 430 (742)
..+.|.||-|+|||-|+..++--..- .....|+++.. ....+...+. .. ..........
T Consensus 37 n~l~l~G~~G~GKTHLl~A~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~-----~~----------~~~~~~~~~~ 96 (213)
T d1l8qa2 37 NPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADD-----FAQAMVEHLK-----KG----------TINEFRNMYK 96 (213)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHH-----HHHHHHHHHH-----HT----------CHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEECHHH-----HHHHHHHHHH-----CC----------CHHHHHHHHH
T ss_conf 85799888998399999999987446765048844378-----7999999987-----16----------6266789876
Q ss_pred CCCEEEECCCCCCC-CHHHHHHHHHHHHHHHHCCCCEEEEEECCH
Q ss_conf 99399980799999-989899999999999833894899992582
Q 004609 431 RESLVLIDEIGSGT-DPSEGVALATSILQYLRDRVGLAVVTTHYA 474 (742)
Q Consensus 431 ~~~LiLLDEp~~gl-Dp~~g~aL~~all~~l~~~~~~viitTH~~ 474 (742)
...++++|+...-. ++.....|.. ++..+.+.++.+|+++...
T Consensus 97 ~~dll~iDDi~~i~~~~~~~~~lf~-lin~~~~~~~~iiits~~~ 140 (213)
T d1l8qa2 97 SVDLLLLDDVQFLSGKERTQIEFFH-IFNTLYLLEKQIILASDRH 140 (213)
T ss_dssp TCSEEEEECGGGGTTCHHHHHHHHH-HHHHHHHTTCEEEEEESSC
T ss_pred HCCCHHHHHHHHHCCCHHHHHHHHH-HHHHHHHCCCEEEEECCCC
T ss_conf 2130101126550586577889999-9998763166389954875
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=92.89 E-value=0.022 Score=30.88 Aligned_cols=21 Identities=29% Similarity=0.525 Sum_probs=19.5
Q ss_pred EEEEEEECCCCCCCHHHHHHH
Q ss_conf 399999079998104984487
Q 004609 352 RVVVITGPNTGGKTASMKTLG 372 (742)
Q Consensus 352 ~~~~ItGpNg~GKSTlLK~iG 372 (742)
+.++|+||.|+||||+.+.|+
T Consensus 8 K~I~i~G~~GsGKTTla~~La 28 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLA 28 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
T ss_conf 289998999998999999999
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.88 E-value=0.02 Score=31.08 Aligned_cols=20 Identities=45% Similarity=0.795 Sum_probs=18.1
Q ss_pred EEEEEEECCCCCCCHHHHHH
Q ss_conf 39999907999810498448
Q 004609 352 RVVVITGPNTGGKTASMKTL 371 (742)
Q Consensus 352 ~~~~ItGpNg~GKSTlLK~i 371 (742)
+-++|+||+|+||||+++.+
T Consensus 2 rpIvl~GpsG~GK~tl~~~L 21 (186)
T d1gkya_ 2 RPIVISGPSGTGKSTLLKKL 21 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
T ss_conf 76999899999989999999
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.87 E-value=0.023 Score=30.66 Aligned_cols=19 Identities=42% Similarity=0.767 Sum_probs=17.4
Q ss_pred EEEEEECCCCCCCHHHHHH
Q ss_conf 9999907999810498448
Q 004609 353 VVVITGPNTGGKTASMKTL 371 (742)
Q Consensus 353 ~~~ItGpNg~GKSTlLK~i 371 (742)
-++|+||+|+||||+++.+
T Consensus 2 pIvl~GPsGsGK~tl~~~L 20 (190)
T d1lvga_ 2 PVVLSGPSGAGKSTLLKKL 20 (190)
T ss_dssp CEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
T ss_conf 1999999999999999999
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.58 E-value=0.03 Score=29.91 Aligned_cols=20 Identities=25% Similarity=0.426 Sum_probs=18.6
Q ss_pred EEEEEEECCCCCCCHHHHHH
Q ss_conf 39999907999810498448
Q 004609 352 RVVVITGPNTGGKTASMKTL 371 (742)
Q Consensus 352 ~~~~ItGpNg~GKSTlLK~i 371 (742)
+.++|+||.|+||||+++.+
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L 23 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTL 23 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHH
T ss_conf 71999998999999999999
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=92.53 E-value=0.036 Score=29.37 Aligned_cols=24 Identities=25% Similarity=0.300 Sum_probs=20.5
Q ss_pred CCCCEEEEEEECCCCCCCHHHHHHH
Q ss_conf 2782399999079998104984487
Q 004609 348 ECETRVVVITGPNTGGKTASMKTLG 372 (742)
Q Consensus 348 ~~g~~~~~ItGpNg~GKSTlLK~iG 372 (742)
+++ -.++|+||.|+||||+.+.++
T Consensus 3 pk~-~~I~i~G~~GsGKTT~~~~La 26 (174)
T d1y63a_ 3 PKG-INILITGTPGTGKTSMAEMIA 26 (174)
T ss_dssp CSS-CEEEEECSTTSSHHHHHHHHH
T ss_pred CCC-CEEEEEECCCCCHHHHHHHHH
T ss_conf 998-889998289998899999999
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=92.53 E-value=0.034 Score=29.57 Aligned_cols=20 Identities=40% Similarity=0.700 Sum_probs=18.7
Q ss_pred EEEEEEECCCCCCCHHHHHH
Q ss_conf 39999907999810498448
Q 004609 352 RVVVITGPNTGGKTASMKTL 371 (742)
Q Consensus 352 ~~~~ItGpNg~GKSTlLK~i 371 (742)
.+++|+||.|+||||+.+.+
T Consensus 3 klI~i~G~~GsGKTTva~~L 22 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRL 22 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHH
T ss_conf 08999899999989999999
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=92.30 E-value=0.039 Score=29.18 Aligned_cols=21 Identities=19% Similarity=0.382 Sum_probs=19.0
Q ss_pred EEEEEEECCCCCCCHHHHHHH
Q ss_conf 399999079998104984487
Q 004609 352 RVVVITGPNTGGKTASMKTLG 372 (742)
Q Consensus 352 ~~~~ItGpNg~GKSTlLK~iG 372 (742)
++++|+|+.|+||||+.+.+.
T Consensus 2 kiivi~G~~GsGKTT~~~~La 22 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVK 22 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
T ss_conf 199998989989899999999
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=92.11 E-value=0.038 Score=29.19 Aligned_cols=20 Identities=25% Similarity=0.692 Sum_probs=19.1
Q ss_pred EEEEEEECCCCCCCHHHHHH
Q ss_conf 39999907999810498448
Q 004609 352 RVVVITGPNTGGKTASMKTL 371 (742)
Q Consensus 352 ~~~~ItGpNg~GKSTlLK~i 371 (742)
++++|+||.|+||||+-+.+
T Consensus 4 kiI~l~G~~GsGKsTva~~L 23 (178)
T d1qhxa_ 4 RMIILNGGSSAGKSGIVRCL 23 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHH
T ss_conf 59999899999989999999
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=91.79 E-value=0.057 Score=27.97 Aligned_cols=22 Identities=32% Similarity=0.350 Sum_probs=19.3
Q ss_pred CCEEEEEEECCCCCCCHHHHHH
Q ss_conf 8239999907999810498448
Q 004609 350 ETRVVVITGPNTGGKTASMKTL 371 (742)
Q Consensus 350 g~~~~~ItGpNg~GKSTlLK~i 371 (742)
|.-+++|+||-||||||+.+.+
T Consensus 21 ~~~iIgI~G~~GSGKSTla~~L 42 (198)
T d1rz3a_ 21 GRLVLGIDGLSRSGKTTLANQL 42 (198)
T ss_dssp SSEEEEEEECTTSSHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHH
T ss_conf 9889997898878999999999
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.24 E-value=0.072 Score=27.31 Aligned_cols=22 Identities=27% Similarity=0.353 Sum_probs=19.7
Q ss_pred CCEEEEEEECCCCCCCHHHHHH
Q ss_conf 8239999907999810498448
Q 004609 350 ETRVVVITGPNTGGKTASMKTL 371 (742)
Q Consensus 350 g~~~~~ItGpNg~GKSTlLK~i 371 (742)
...+++++|+.||||||+.+.+
T Consensus 13 ~p~liil~G~pGsGKST~a~~l 34 (172)
T d1yj5a2 13 NPEVVVAVGFPGAGKSTFIQEH 34 (172)
T ss_dssp SCCEEEEECCTTSSHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHH
T ss_conf 9989999899999899999999
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=91.15 E-value=0.044 Score=28.76 Aligned_cols=21 Identities=29% Similarity=0.536 Sum_probs=18.6
Q ss_pred EEEEEEECCCCCCCHHHHHHH
Q ss_conf 399999079998104984487
Q 004609 352 RVVVITGPNTGGKTASMKTLG 372 (742)
Q Consensus 352 ~~~~ItGpNg~GKSTlLK~iG 372 (742)
+.++|+||.|+||||+-|.++
T Consensus 3 k~I~l~G~~GsGKSTvak~La 23 (169)
T d1kaga_ 3 RNIFLVGPMGAGKSTIGRQLA 23 (169)
T ss_dssp CCEEEECCTTSCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
T ss_conf 749998999999999999999
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=91.04 E-value=0.3 Score=23.05 Aligned_cols=88 Identities=18% Similarity=0.256 Sum_probs=43.1
Q ss_pred EEEEEEECCCCCCCHHHHHHHHHHHHHHHCEE-ECCCCCCCCHHHHHHHHHCCCCCCCCCC---CCCCHHHHH--HHHHH
Q ss_conf 39999907999810498448765654440623-3379999924999999982993000166---254219999--99999
Q 004609 352 RVVVITGPNTGGKTASMKTLGLASLMSKAGLY-LPAKNHPRLPWFDLILADIGDHQSLEQN---LSTFSGHIS--RIVDI 425 (742)
Q Consensus 352 ~~~~ItGpNg~GKSTlLK~iGLl~~la~~G~~-vpa~~~~~i~~~d~il~~ig~~~~i~~~---lStlSgg~k--rl~~i 425 (742)
.++.++||.|.|||.+.|.++-..+-....+. +..+. + .+..++.+- .-.+.|... .+...
T Consensus 54 ~~~lf~Gp~G~GKt~lak~la~~l~~~~~~~~~~~~~~---~----------~~~~~~~~L~g~~~gyvG~~~~~~l~~~ 120 (315)
T d1qvra3 54 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTE---Y----------MEKHAVSRLIGAPPGYVGYEEGGQLTEA 120 (315)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTT---C----------CSSGGGGGC--------------CHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEECCC---C----------CCCHHHHHHCCCCCCCCCCCCCCHHHHH
T ss_conf 69999788862489999999998358875348873155---4----------5421566514899987674667848999
Q ss_pred HHHCCCCCEEEECCCCCCCCHHHHHHHHH
Q ss_conf 98369993999807999999898999999
Q 004609 426 LELVSRESLVLIDEIGSGTDPSEGVALAT 454 (742)
Q Consensus 426 ~~~~~~~~LiLLDEp~~glDp~~g~aL~~ 454 (742)
.. ..+.+++++||.-.- +|.-...|..
T Consensus 121 ~~-~~p~~Vvl~DEieK~-~~~v~~~ll~ 147 (315)
T d1qvra3 121 VR-RRPYSVILFDEIEKA-HPDVFNILLQ 147 (315)
T ss_dssp HH-HCSSEEEEESSGGGS-CHHHHHHHHH
T ss_pred HH-HCCCCEEEEEHHHHC-CHHHHHHHHH
T ss_conf 98-499837997147540-7899989999
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.95 E-value=0.059 Score=27.89 Aligned_cols=21 Identities=14% Similarity=0.306 Sum_probs=18.6
Q ss_pred EEEEEEECCCCCCCHHHHHHH
Q ss_conf 399999079998104984487
Q 004609 352 RVVVITGPNTGGKTASMKTLG 372 (742)
Q Consensus 352 ~~~~ItGpNg~GKSTlLK~iG 372 (742)
=+++|+||-||||||+-+.+.
T Consensus 3 ~iIgI~G~~gSGKSTla~~L~ 23 (213)
T d1uj2a_ 3 FLIGVSGGTASGKSSVCAKIV 23 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
T ss_conf 899998999787999999999
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=90.59 E-value=0.089 Score=26.66 Aligned_cols=19 Identities=26% Similarity=0.475 Sum_probs=17.8
Q ss_pred EEEEEECCCCCCCHHHHHH
Q ss_conf 9999907999810498448
Q 004609 353 VVVITGPNTGGKTASMKTL 371 (742)
Q Consensus 353 ~~~ItGpNg~GKSTlLK~i 371 (742)
+++|||+-||||||..+.+
T Consensus 5 iIgitG~igSGKStv~~~l 23 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAF 23 (208)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
T ss_conf 9997898868899999999
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.31 E-value=0.086 Score=26.75 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=21.3
Q ss_pred CCCCEEEEEEECCCCCCCHHHHHHH
Q ss_conf 2782399999079998104984487
Q 004609 348 ECETRVVVITGPNTGGKTASMKTLG 372 (742)
Q Consensus 348 ~~g~~~~~ItGpNg~GKSTlLK~iG 372 (742)
++| ..++|-|+.|+||||+.+.+.
T Consensus 1 ~kG-k~I~iEG~DGsGKST~~~~L~ 24 (214)
T d1tmka_ 1 GRG-KLILIEGLDRTGKTTQCNILY 24 (214)
T ss_dssp CCC-CEEEEEESTTSSHHHHHHHHH
T ss_pred CCE-EEEEEECCCCCCHHHHHHHHH
T ss_conf 976-899998998886999999999
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=90.27 E-value=0.084 Score=26.85 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=20.1
Q ss_pred CCCEEEEEEECCCCCCCHHHHHH
Q ss_conf 78239999907999810498448
Q 004609 349 CETRVVVITGPNTGGKTASMKTL 371 (742)
Q Consensus 349 ~g~~~~~ItGpNg~GKSTlLK~i 371 (742)
+| ..++|-|+.|+||||+++.+
T Consensus 1 rg-kfIviEG~dGsGKsT~~~~L 22 (210)
T d4tmka_ 1 RS-KYIVIEGLEGAGKTTARNVV 22 (210)
T ss_dssp CC-CEEEEEECTTSCHHHHHHHH
T ss_pred CC-CEEEEECCCCCCHHHHHHHH
T ss_conf 98-78999899888799999999
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=90.17 E-value=0.094 Score=26.49 Aligned_cols=21 Identities=19% Similarity=0.259 Sum_probs=19.0
Q ss_pred EEEEEEECCCCCCCHHHHHHH
Q ss_conf 399999079998104984487
Q 004609 352 RVVVITGPNTGGKTASMKTLG 372 (742)
Q Consensus 352 ~~~~ItGpNg~GKSTlLK~iG 372 (742)
..+++.||.|+||||+.+.++
T Consensus 33 ~~ilL~GpPGtGKT~la~~la 53 (273)
T d1gvnb_ 33 TAFLLGGQPGSGKTSLRSAIF 53 (273)
T ss_dssp EEEEEECCTTSCTHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
T ss_conf 799988979988999999999
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=90.10 E-value=0.096 Score=26.45 Aligned_cols=24 Identities=25% Similarity=0.282 Sum_probs=20.9
Q ss_pred CCCCEEEEEEECCCCCCCHHHHHHH
Q ss_conf 2782399999079998104984487
Q 004609 348 ECETRVVVITGPNTGGKTASMKTLG 372 (742)
Q Consensus 348 ~~g~~~~~ItGpNg~GKSTlLK~iG 372 (742)
.+| -++.|+|+-|+||||+-+.++
T Consensus 4 ~~g-~~I~l~G~~GsGKTTia~~La 27 (183)
T d1m8pa3 4 TQG-FTIFLTGYMNSGKDAIARALQ 27 (183)
T ss_dssp TCC-EEEEEECSTTSSHHHHHHHHH
T ss_pred CCC-EEEEEECCCCCCHHHHHHHHH
T ss_conf 997-699988999999999999999
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.83 E-value=0.42 Score=21.99 Aligned_cols=127 Identities=16% Similarity=0.116 Sum_probs=57.1
Q ss_pred CCCCCEEEEEEECCCCCCCHHHHHHHHHHHH----HHH---CEEECCCCCCCCHHHHHHHHHCCCCCC------CCCCCC
Q ss_conf 0278239999907999810498448765654----440---623337999992499999998299300------016625
Q 004609 347 VECETRVVVITGPNTGGKTASMKTLGLASLM----SKA---GLYLPAKNHPRLPWFDLILADIGDHQS------LEQNLS 413 (742)
Q Consensus 347 l~~g~~~~~ItGpNg~GKSTlLK~iGLl~~l----a~~---G~~vpa~~~~~i~~~d~il~~ig~~~~------i~~~lS 413 (742)
+++| +++.|+||-|+||||+.-++...+.+ +.. ..|+........-.+......++.... ......
T Consensus 31 i~~G-~~~li~G~pGsGKT~l~lq~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (251)
T d1szpa2 31 VETG-SITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAY 109 (251)
T ss_dssp EESS-SEEEEEESTTSSHHHHHHHHTTTTTSCTTTTCCSCEEEEEESSSCCCGGGGHHHHHHTCCCHHHHGGGEEEEECC
T ss_pred CCCC-EEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHHHHCCCCHHHHHCCEEEEECC
T ss_conf 8699-699998389998899999999986312431268963999940230789999888976487645530415787222
Q ss_pred CCHHHHH--HHHHHHHHCCCCCEEEECCCCCC---------CCHHH---HHHHHHHHHHHHHCCCCEEEEEECCH
Q ss_conf 4219999--99999983699939998079999---------99898---99999999999833894899992582
Q 004609 414 TFSGHIS--RIVDILELVSRESLVLIDEIGSG---------TDPSE---GVALATSILQYLRDRVGLAVVTTHYA 474 (742)
Q Consensus 414 tlSgg~k--rl~~i~~~~~~~~LiLLDEp~~g---------lDp~~---g~aL~~all~~l~~~~~~viitTH~~ 474 (742)
.+...+. .............++++|-...- ..... ...+...+.......+.+++++.|..
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 184 (251)
T d1szpa2 110 NADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVV 184 (251)
T ss_dssp STTTHHHHHHHTHHHHHHSCEEEEEEETGGGGGSCC-----CTHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECC
T ss_pred CHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEE
T ss_conf 056788878789887520465324420356655444226530456788999999999721222346999988887
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=89.81 E-value=0.092 Score=26.55 Aligned_cols=22 Identities=14% Similarity=0.341 Sum_probs=20.4
Q ss_pred CCCEEEEEEECCCCCCCHHHHHH
Q ss_conf 78239999907999810498448
Q 004609 349 CETRVVVITGPNTGGKTASMKTL 371 (742)
Q Consensus 349 ~g~~~~~ItGpNg~GKSTlLK~i 371 (742)
+| +..+++|+.|.|||||++.+
T Consensus 94 ~~-kt~~~~G~SGVGKSTLiN~L 115 (225)
T d1u0la2 94 KG-KISTMAGLSGVGKSSLLNAI 115 (225)
T ss_dssp SS-SEEEEECSTTSSHHHHHHHH
T ss_pred CC-CEEEEECCCCCCHHHHHHHH
T ss_conf 69-80899788987788887730
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=89.81 E-value=0.076 Score=27.12 Aligned_cols=19 Identities=37% Similarity=0.419 Sum_probs=17.3
Q ss_pred EEEEEECCCCCCCHHHHHH
Q ss_conf 9999907999810498448
Q 004609 353 VVVITGPNTGGKTASMKTL 371 (742)
Q Consensus 353 ~~~ItGpNg~GKSTlLK~i 371 (742)
.++|+||-|+||||+.+.+
T Consensus 6 ~I~i~G~pGsGKTTia~~L 24 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKEL 24 (173)
T ss_dssp CEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
T ss_conf 7989899999989999999
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=89.59 E-value=0.2 Score=24.30 Aligned_cols=20 Identities=40% Similarity=0.622 Sum_probs=18.0
Q ss_pred EEEEEEECCCCCCCHHHHHH
Q ss_conf 39999907999810498448
Q 004609 352 RVVVITGPNTGGKTASMKTL 371 (742)
Q Consensus 352 ~~~~ItGpNg~GKSTlLK~i 371 (742)
.+.+|+||-|+||||++..+
T Consensus 164 ~~~vI~G~pGTGKTt~i~~~ 183 (359)
T d1w36d1 164 RISVISGGPGTGKTTTVAKL 183 (359)
T ss_dssp SEEEEECCTTSTHHHHHHHH
T ss_pred CEEEEECCCCCCCEEHHHHH
T ss_conf 85999768988752169999
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.59 E-value=0.088 Score=26.68 Aligned_cols=20 Identities=25% Similarity=0.433 Sum_probs=19.2
Q ss_pred EEEEEEECCCCCCCHHHHHH
Q ss_conf 39999907999810498448
Q 004609 352 RVVVITGPNTGGKTASMKTL 371 (742)
Q Consensus 352 ~~~~ItGpNg~GKSTlLK~i 371 (742)
+.++|-|+-|+||||+++.+
T Consensus 3 k~I~ieG~dGsGKST~~~~L 22 (241)
T d1p5zb_ 3 KKISIEGNIAAGKSTFVNIL 22 (241)
T ss_dssp EEEEEECSTTSSHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHH
T ss_conf 88999878887799999999
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=89.57 E-value=0.082 Score=26.90 Aligned_cols=20 Identities=20% Similarity=0.479 Sum_probs=18.2
Q ss_pred EEEEEEECCCCCCCHHHHHH
Q ss_conf 39999907999810498448
Q 004609 352 RVVVITGPNTGGKTASMKTL 371 (742)
Q Consensus 352 ~~~~ItGpNg~GKSTlLK~i 371 (742)
-+++|+|+.||||||+.+.+
T Consensus 5 pIIgIaG~SGSGKTTva~~l 24 (288)
T d1a7ja_ 5 PIISVTGSSGAGTSTVKHTF 24 (288)
T ss_dssp CEEEEESCC---CCTHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
T ss_conf 89999899978099999999
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=89.53 E-value=0.091 Score=26.59 Aligned_cols=20 Identities=30% Similarity=0.336 Sum_probs=18.0
Q ss_pred EEEEEEECCCCCCCHHHHHH
Q ss_conf 39999907999810498448
Q 004609 352 RVVVITGPNTGGKTASMKTL 371 (742)
Q Consensus 352 ~~~~ItGpNg~GKSTlLK~i 371 (742)
-+++|||+-||||||..+.+
T Consensus 3 ~iIgITG~igSGKStv~~~l 22 (205)
T d1jjva_ 3 YIVGLTGGIGSGKTTIANLF 22 (205)
T ss_dssp EEEEEECSTTSCHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHH
T ss_conf 89998888878899999999
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=89.46 E-value=0.45 Score=21.80 Aligned_cols=126 Identities=18% Similarity=0.220 Sum_probs=66.4
Q ss_pred CCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCEEECCCC-CCCCHHHHHHHHHCCCCCCCCCCCCCCHHHH-HHHHHHHH
Q ss_conf 823999990799981049844876565444062333799-9992499999998299300016625421999-99999998
Q 004609 350 ETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKN-HPRLPWFDLILADIGDHQSLEQNLSTFSGHI-SRIVDILE 427 (742)
Q Consensus 350 g~~~~~ItGpNg~GKSTlLK~iGLl~~la~~G~~vpa~~-~~~i~~~d~il~~ig~~~~i~~~lStlSgg~-krl~~i~~ 427 (742)
+..-.+++||-|.|||++..-++.- +.. | -+|..- ...+-. +. -.++-.+.+ +-|+. .|+..++.
T Consensus 42 ~k~n~lLvG~pGVGKTalv~~LA~r--i~~-~-~vp~~L~~~~i~~-------ld-~~~LiAg~~-~rG~~E~rl~~il~ 108 (195)
T d1jbka_ 42 TKNNPVLIGEPGVGKTAIVEGLAQR--IIN-G-EVPEGLKGRRVLA-------LD-MGALVAGAK-YRGEFEERLKGVLN 108 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHH--HHH-T-CSCGGGTTCEEEE-------EC-HHHHHTTTC-SHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHH--HHH-C-CCCHHHCCCEEEE-------EE-HHHHHCCCC-CCHHHHHHHHHHHH
T ss_conf 8887399835875447999999999--980-8-9997881856999-------66-999864587-40779999999999
Q ss_pred H---CCCCCEEEECCCCCCCCHHH---HHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCCCCCEEC
Q ss_conf 3---69993999807999999898---9999999999983389489999258236510254531106
Q 004609 428 L---VSRESLVLIDEIGSGTDPSE---GVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFEN 488 (742)
Q Consensus 428 ~---~~~~~LiLLDEp~~glDp~~---g~aL~~all~~l~~~~~~viitTH~~~l~~~a~~~~~i~~ 488 (742)
. ..++-++.+||+-.-.+... +..++..+.-++....-.+|.+|...+...+......+..
T Consensus 109 e~~~~~~~iILfIDeih~l~~~g~~~g~~d~~~~Lkp~L~rg~l~~IgatT~eey~~~~e~d~aL~r 175 (195)
T d1jbka_ 109 DLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYRQYIEKDAALER 175 (195)
T ss_dssp HHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHTTSCCEEEEECHHHHHHHTTTCHHHHT
T ss_pred HHHCCCCCEEEECCHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCHHHHH
T ss_conf 8731798089972608998437877775238999999985799549851899999999873889996
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=89.38 E-value=0.098 Score=26.37 Aligned_cols=20 Identities=30% Similarity=0.363 Sum_probs=18.1
Q ss_pred EEEEEEECCCCCCCHHHHHH
Q ss_conf 39999907999810498448
Q 004609 352 RVVVITGPNTGGKTASMKTL 371 (742)
Q Consensus 352 ~~~~ItGpNg~GKSTlLK~i 371 (742)
=+++|||+-||||||+.+.+
T Consensus 4 ~IIgitG~~gSGKstva~~l 23 (191)
T d1uf9a_ 4 IIIGITGNIGSGKSTVAALL 23 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHH
T ss_conf 89999898877899999999
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.91 E-value=0.11 Score=25.92 Aligned_cols=26 Identities=27% Similarity=0.350 Sum_probs=22.6
Q ss_pred CCCCCEEEEEEECCCCCCCHHHHHHHH
Q ss_conf 027823999990799981049844876
Q 004609 347 VECETRVVVITGPNTGGKTASMKTLGL 373 (742)
Q Consensus 347 l~~g~~~~~ItGpNg~GKSTlLK~iGL 373 (742)
+++| +++.|+||.|+|||++.-.++.
T Consensus 20 i~~G-~v~~i~G~~GsGKT~l~l~la~ 45 (242)
T d1n0wa_ 20 IETG-SITEMFGEFRTGKTQICHTLAV 45 (242)
T ss_dssp EETT-SEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCC-EEEEEEECCCCCHHHHHHHHHH
T ss_conf 8599-7999995899999999999999
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=88.87 E-value=0.12 Score=25.68 Aligned_cols=20 Identities=30% Similarity=0.456 Sum_probs=18.8
Q ss_pred EEEEEEECCCCCCCHHHHHH
Q ss_conf 39999907999810498448
Q 004609 352 RVVVITGPNTGGKTASMKTL 371 (742)
Q Consensus 352 ~~~~ItGpNg~GKSTlLK~i 371 (742)
-.++|+|+.|+|||||+..+
T Consensus 14 ~kI~lvG~~~vGKTsLl~~l 33 (186)
T d1f6ba_ 14 GKLVFLGLDNAGKTTLLHML 33 (186)
T ss_dssp EEEEEEEETTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
T ss_conf 78999999998989999999
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.60 E-value=0.14 Score=25.27 Aligned_cols=23 Identities=30% Similarity=0.326 Sum_probs=20.5
Q ss_pred CCEEEEEEECCCCCCCHHHHHHH
Q ss_conf 82399999079998104984487
Q 004609 350 ETRVVVITGPNTGGKTASMKTLG 372 (742)
Q Consensus 350 g~~~~~ItGpNg~GKSTlLK~iG 372 (742)
|.++++|-|+-|+||||+++.+.
T Consensus 1 ~pk~IviEG~~GsGKST~~~~L~ 23 (241)
T d2ocpa1 1 GPRRLSIEGNIAVGKSTFVKLLT 23 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
T ss_conf 98199998998885999999999
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=88.57 E-value=0.098 Score=26.37 Aligned_cols=20 Identities=30% Similarity=0.408 Sum_probs=19.0
Q ss_pred EEEEEEECCCCCCCHHHHHH
Q ss_conf 39999907999810498448
Q 004609 352 RVVVITGPNTGGKTASMKTL 371 (742)
Q Consensus 352 ~~~~ItGpNg~GKSTlLK~i 371 (742)
-+++|.|+-|+||||+++.+
T Consensus 10 ~~I~ieG~~GsGKTTl~~~L 29 (197)
T d2vp4a1 10 FTVLIEGNIGSGKTTYLNHF 29 (197)
T ss_dssp EEEEEECSTTSCHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHH
T ss_conf 19998899998889999999
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=88.37 E-value=0.53 Score=21.30 Aligned_cols=27 Identities=19% Similarity=0.495 Sum_probs=22.0
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHHCEEE-CCC
Q ss_conf 99999079998104984487656544406233-379
Q 004609 353 VVVITGPNTGGKTASMKTLGLASLMSKAGLYL-PAK 387 (742)
Q Consensus 353 ~~~ItGpNg~GKSTlLK~iGLl~~la~~G~~v-pa~ 387 (742)
.++++|.=.+||||+++.+ .|..+ |.+
T Consensus 28 ~ivvvG~~SsGKSsliNaL--------lg~~~lP~~ 55 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENF--------VGRDFLPRG 55 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHH--------HTSCCSCCC
T ss_pred EEEEECCCCCCHHHHHHHH--------HCCCCCCCC
T ss_conf 6999768989799999999--------689868878
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=88.15 E-value=0.11 Score=26.13 Aligned_cols=21 Identities=19% Similarity=0.308 Sum_probs=18.1
Q ss_pred EEEEEEECCCCCCCHHHHHHH
Q ss_conf 399999079998104984487
Q 004609 352 RVVVITGPNTGGKTASMKTLG 372 (742)
Q Consensus 352 ~~~~ItGpNg~GKSTlLK~iG 372 (742)
+.++|+||.|+||||+-|.++
T Consensus 3 ~~Iil~G~~GsGKSTia~~LA 23 (170)
T d1e6ca_ 3 EPIFMVGARGCGMTTVGRELA 23 (170)
T ss_dssp CCEEEESCTTSSHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHH
T ss_conf 988998899998899999999
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=88.09 E-value=0.55 Score=21.18 Aligned_cols=121 Identities=12% Similarity=0.004 Sum_probs=55.7
Q ss_pred EEEEEEECCCCCCCHHHHHHHHHHH-HHH-HCEEECCCCCCCC-HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 3999990799981049844876565-444-0623337999992-499999998299300016625421999999999983
Q 004609 352 RVVVITGPNTGGKTASMKTLGLASL-MSK-AGLYLPAKNHPRL-PWFDLILADIGDHQSLEQNLSTFSGHISRIVDILEL 428 (742)
Q Consensus 352 ~~~~ItGpNg~GKSTlLK~iGLl~~-la~-~G~~vpa~~~~~i-~~~d~il~~ig~~~~i~~~lStlSgg~krl~~i~~~ 428 (742)
..++|+||-|.|||++++.+.-... ... ...++.+...... ..+......++... .........-...+......
T Consensus 44 ~~lll~GppGtGKT~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 121 (276)
T d1fnna2 44 PRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPF--PRRGLSRDEFLALLVEHLRE 121 (276)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCC--CSSCCCHHHHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHH--HHHCCCHHHHHHHHHHHHHH
T ss_conf 8168889899989999999999975446885787323001124666545677643345--55325435789999998752
Q ss_pred CCCCCEEEECCCCCCCCHHHHHHHHHHHHHH---HHCCCCEEEEEECCHHH
Q ss_conf 6999399980799999989899999999999---83389489999258236
Q 004609 429 VSRESLVLIDEIGSGTDPSEGVALATSILQY---LRDRVGLAVVTTHYADL 476 (742)
Q Consensus 429 ~~~~~LiLLDEp~~glDp~~g~aL~~all~~---l~~~~~~viitTH~~~l 476 (742)
.....++++|+.-.-.+...... .. +... .......+++++.....
T Consensus 122 ~~~~~~~~~~~~d~~~~~~~~~~-~~-~~~~~~~~~~~~~~~i~~~~~~~~ 170 (276)
T d1fnna2 122 RDLYMFLVLDDAFNLAPDILSTF-IR-LGQEADKLGAFRIALVIVGHNDAV 170 (276)
T ss_dssp TTCCEEEEEETGGGSCHHHHHHH-HH-HTTCHHHHSSCCEEEEEEESSTHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHH-HH-HHHCCCCCCCCCEEEEECCCCHHH
T ss_conf 06543320368887535431068-88-874044335652488625876454
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=87.75 E-value=0.58 Score=21.05 Aligned_cols=29 Identities=24% Similarity=0.232 Sum_probs=24.6
Q ss_pred CCCCCEEEEEEECCCCCCCHHHHHHHHHHH
Q ss_conf 027823999990799981049844876565
Q 004609 347 VECETRVVVITGPNTGGKTASMKTLGLASL 376 (742)
Q Consensus 347 l~~g~~~~~ItGpNg~GKSTlLK~iGLl~~ 376 (742)
+++| +++.|.|+.|+|||++.-.++....
T Consensus 31 l~~G-~l~~i~G~~G~GKT~~~l~~a~~~~ 59 (258)
T d2i1qa2 31 LESQ-SVTEFAGVFGSGKTQIMHQSCVNLQ 59 (258)
T ss_dssp EETT-EEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCCC-EEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 6288-5999991799998999999999998
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=87.62 E-value=0.59 Score=20.99 Aligned_cols=115 Identities=15% Similarity=0.110 Sum_probs=55.3
Q ss_pred EEEEEEECCCCCCCHHHHHHHHHHHHHHHC-EEECCCCCCCCHHHHHHHHHCCCCC-CC--CCCCCCCHHHHH-HHHHHH
Q ss_conf 399999079998104984487656544406-2333799999249999999829930-00--166254219999-999999
Q 004609 352 RVVVITGPNTGGKTASMKTLGLASLMSKAG-LYLPAKNHPRLPWFDLILADIGDHQ-SL--EQNLSTFSGHIS-RIVDIL 426 (742)
Q Consensus 352 ~~~~ItGpNg~GKSTlLK~iGLl~~la~~G-~~vpa~~~~~i~~~d~il~~ig~~~-~i--~~~lStlSgg~k-rl~~i~ 426 (742)
..+++.||.|.||||+.+.++-... +..+ ...+. ....-+..+.......- .+ ...-+++.-+.- .+..-+
T Consensus 25 h~lLl~Gp~G~GKtt~a~~~a~~l~-~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~ir~l~~~~ 100 (207)
T d1a5ta2 25 HALLIQALPGMGDDALIYALSRYLL-CQQPQGHKSC---GHCRGCQLMQAGTHPDYYTLAPEKGKNTLGVDAVREVTEKL 100 (207)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHT-CSSCBTTBCC---SCSHHHHHHHHTCCTTEEEECCCTTCSSBCHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCC-CCCCCCCCCC---CCCCHHHHHHHCCCCCCCHHHHHHCCCCCCCCHHHHHHHHH
T ss_conf 3798889998759999999998210-1012321223---34201556543034311012343134533321146776532
Q ss_pred H---HCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCC--CCEEEEEECCHH
Q ss_conf 8---369993999807999999898999999999998338--948999925823
Q 004609 427 E---LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDR--VGLAVVTTHYAD 475 (742)
Q Consensus 427 ~---~~~~~~LiLLDEp~~glDp~~g~aL~~all~~l~~~--~~~viitTH~~~ 475 (742)
. ......++++||.-.-+ +....+ ++..+-+. +..+|++|++..
T Consensus 101 ~~~~~~~~~kviIide~d~l~-~~a~n~----Llk~lEep~~~~~fIl~t~~~~ 149 (207)
T d1a5ta2 101 NEHARLGGAKVVWVTDAALLT-DAAANA----LLKTLEEPPAETWFFLATREPE 149 (207)
T ss_dssp TSCCTTSSCEEEEESCGGGBC-HHHHHH----HHHHHTSCCTTEEEEEEESCGG
T ss_pred HHCCCCCCCCEEEECHHHHHH-HHHHHH----HHHHHHHHCCCCEEEEEECCHH
T ss_conf 110035764047731344200-001499----9999985011110455306865
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=87.60 E-value=0.15 Score=25.11 Aligned_cols=25 Identities=16% Similarity=0.425 Sum_probs=21.5
Q ss_pred CCCCCCEEEEEEECCCCCCCHHHHHH
Q ss_conf 00278239999907999810498448
Q 004609 346 KVECETRVVVITGPNTGGKTASMKTL 371 (742)
Q Consensus 346 ~l~~g~~~~~ItGpNg~GKSTlLK~i 371 (742)
.+.++ .+++|+||-||||||.-+.|
T Consensus 4 ~~~~~-~iI~l~G~pGSGKsT~a~~L 28 (194)
T d3adka_ 4 KLKKS-KIIFVVGGPGSGKGTQCEKI 28 (194)
T ss_dssp HHHTS-CEEEEEECTTSSHHHHHHHH
T ss_pred CCCCC-CEEEEECCCCCCHHHHHHHH
T ss_conf 24678-28999899999879999999
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=87.49 E-value=0.14 Score=25.27 Aligned_cols=74 Identities=20% Similarity=0.231 Sum_probs=40.7
Q ss_pred EEEEEEECCCCCCCHHHHHHHHHHHHHHHCEE-ECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 39999907999810498448765654440623-33799999249999999829930001662542199999999998369
Q 004609 352 RVVVITGPNTGGKTASMKTLGLASLMSKAGLY-LPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVS 430 (742)
Q Consensus 352 ~~~~ItGpNg~GKSTlLK~iGLl~~la~~G~~-vpa~~~~~i~~~d~il~~ig~~~~i~~~lStlSgg~krl~~i~~~~~ 430 (742)
..+++.||.|+||||+.+.++-. .+.. ....+.... ..+ .+..++....
T Consensus 36 ~~~L~~GPpGtGKT~lA~~la~~-----~~~~~~~~~~~~~~-----------------------~~~--~~~~~~~~~~ 85 (238)
T d1in4a2 36 DHVLLAGPPGLGKTTLAHIIASE-----LQTNIHVTSGPVLV-----------------------KQG--DMAAILTSLE 85 (238)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH-----HTCCEEEEETTTCC-----------------------SHH--HHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHC-----CCCCCCCCCCCCCC-----------------------CHH--HHHHHHHHHC
T ss_conf 74898799997388999999850-----38885332574422-----------------------488--8999987543
Q ss_pred CCCEEEECCCCCCCCHHHHHHHHHHH
Q ss_conf 99399980799999989899999999
Q 004609 431 RESLVLIDEIGSGTDPSEGVALATSI 456 (742)
Q Consensus 431 ~~~LiLLDEp~~glDp~~g~aL~~al 456 (742)
....+++||.-. +++.....+...+
T Consensus 86 ~~~~~~ide~~~-~~~~~~~~l~~~~ 110 (238)
T d1in4a2 86 RGDVLFIDEIHR-LNKAVEELLYSAI 110 (238)
T ss_dssp TTCEEEEETGGG-CCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHH-HHHHHHHHCCCCE
T ss_conf 588247778988-4067776421402
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=87.37 E-value=0.17 Score=24.72 Aligned_cols=20 Identities=30% Similarity=0.466 Sum_probs=18.4
Q ss_pred EEEEEEECCCCCCCHHHHHH
Q ss_conf 39999907999810498448
Q 004609 352 RVVVITGPNTGGKTASMKTL 371 (742)
Q Consensus 352 ~~~~ItGpNg~GKSTlLK~i 371 (742)
-+++|+|.=|+||||||+-+
T Consensus 4 Pv~iitGFLGaGKTTll~~l 23 (222)
T d1nija1 4 AVTLLTGFLGAGKTTLLRHI 23 (222)
T ss_dssp EEEEEEESSSSSCHHHHHHH
T ss_pred CEEEEEECCCCCHHHHHHHH
T ss_conf 88998648889999999999
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=87.18 E-value=0.16 Score=24.87 Aligned_cols=19 Identities=26% Similarity=0.532 Sum_probs=17.7
Q ss_pred EEEEEECCCCCCCHHHHHH
Q ss_conf 9999907999810498448
Q 004609 353 VVVITGPNTGGKTASMKTL 371 (742)
Q Consensus 353 ~~~ItGpNg~GKSTlLK~i 371 (742)
+++|.|+-|+||||+++.+
T Consensus 2 lI~ieG~dGsGKST~~~~L 20 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKL 20 (208)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
T ss_conf 8999899878999999999
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=86.98 E-value=0.34 Score=22.66 Aligned_cols=36 Identities=14% Similarity=0.211 Sum_probs=29.3
Q ss_pred EECCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHH
Q ss_conf 0015530027823999990799981049844876565
Q 004609 340 PVPIDIKVECETRVVVITGPNTGGKTASMKTLGLASL 376 (742)
Q Consensus 340 ~v~vsl~l~~g~~~~~ItGpNg~GKSTlLK~iGLl~~ 376 (742)
.++.=+.+.+| +..+|.|+.|+||||++..+...+.
T Consensus 33 ~ID~l~PigrG-Qr~~I~g~~g~GKT~l~~~i~~~~~ 68 (289)
T d1xpua3 33 VLDLASPIGRG-QRGLIVAPPKAGKTMLLQNIAQSIA 68 (289)
T ss_dssp HHHHHSCCBTT-CEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCC-CEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 56412564578-7556867999887899999999775
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=86.97 E-value=0.15 Score=25.13 Aligned_cols=18 Identities=28% Similarity=0.431 Sum_probs=16.9
Q ss_pred EEEEECCCCCCCHHHHHH
Q ss_conf 999907999810498448
Q 004609 354 VVITGPNTGGKTASMKTL 371 (742)
Q Consensus 354 ~~ItGpNg~GKSTlLK~i 371 (742)
++|+|+.|+||||+-|.+
T Consensus 3 I~liG~~GsGKsTi~k~L 20 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARAL 20 (161)
T ss_dssp EEEECCTTSCHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
T ss_conf 999899999889999999
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=86.96 E-value=0.18 Score=24.61 Aligned_cols=99 Identities=18% Similarity=0.181 Sum_probs=46.4
Q ss_pred CCCEEEEEEECCCCCCCHHHHHHHHHHHH-HHHCEEE---CCCC---CCCCHHHHHHH-HHC--CCCCCCCCC-CCCCHH
Q ss_conf 78239999907999810498448765654-4406233---3799---99924999999-982--993000166-254219
Q 004609 349 CETRVVVITGPNTGGKTASMKTLGLASLM-SKAGLYL---PAKN---HPRLPWFDLIL-ADI--GDHQSLEQN-LSTFSG 417 (742)
Q Consensus 349 ~g~~~~~ItGpNg~GKSTlLK~iGLl~~l-a~~G~~v---pa~~---~~~i~~~d~il-~~i--g~~~~i~~~-lStlSg 417 (742)
+. .+++||||-|+|||||+..++..... .+....+ |.+. .+-++- ++. ... +..-.+... .+...|
T Consensus 50 ~~-~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavDpss~~~gg~llgd--r~rm~~~~~~~~~~ir~~~~~~~~g 126 (323)
T d2qm8a1 50 RA-IRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGD--KTRMARLAIDRNAFIRPSPSSGTLG 126 (323)
T ss_dssp CS-EEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCC--GGGSTTGGGCTTEEEECCCCCSSHH
T ss_pred CC-EEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHCCCCC--HHHHHHHHCCCCEEECCCCCCCCCC
T ss_conf 81-59861179988899999999998763687513443465547877506410--1337887503440112665345331
Q ss_pred HHH-HHHHH--HHHCCCCCEEEECCCCCCCCHHHHH
Q ss_conf 999-99999--9836999399980799999989899
Q 004609 418 HIS-RIVDI--LELVSRESLVLIDEIGSGTDPSEGV 450 (742)
Q Consensus 418 g~k-rl~~i--~~~~~~~~LiLLDEp~~glDp~~g~ 450 (742)
|.- ....+ +.-+.+-.++++--.|.|..+.+-.
T Consensus 127 g~~~~~~~~i~~~~~~g~d~iiiETVG~gq~e~~~~ 162 (323)
T d2qm8a1 127 GVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVA 162 (323)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHH
T ss_pred CHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHH
T ss_conf 106778999976414899858986323332146653
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=86.46 E-value=0.21 Score=24.10 Aligned_cols=22 Identities=18% Similarity=0.277 Sum_probs=19.6
Q ss_pred CCCEEEEEEECCCCCCCHHHHHH
Q ss_conf 78239999907999810498448
Q 004609 349 CETRVVVITGPNTGGKTASMKTL 371 (742)
Q Consensus 349 ~g~~~~~ItGpNg~GKSTlLK~i 371 (742)
.+ .+++|+||-|+|||++++.+
T Consensus 28 ~~-~~i~i~G~~G~GKTsLl~~~ 49 (283)
T d2fnaa2 28 RA-PITLVLGLRRTGKSSIIKIG 49 (283)
T ss_dssp CS-SEEEEEESTTSSHHHHHHHH
T ss_pred CC-CEEEEECCCCCCHHHHHHHH
T ss_conf 59-87999869998299999999
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=86.41 E-value=0.23 Score=23.77 Aligned_cols=23 Identities=22% Similarity=0.289 Sum_probs=20.9
Q ss_pred CCCCEEEEEEECCCCCCCHHHHHH
Q ss_conf 278239999907999810498448
Q 004609 348 ECETRVVVITGPNTGGKTASMKTL 371 (742)
Q Consensus 348 ~~g~~~~~ItGpNg~GKSTlLK~i 371 (742)
.+| .++.+||..|+||||+-+.+
T Consensus 22 ~kg-~vIwltGlsGsGKTTia~~L 44 (208)
T d1m7ga_ 22 QRG-LTIWLTGLSASGKSTLAVEL 44 (208)
T ss_dssp SSC-EEEEEECSTTSSHHHHHHHH
T ss_pred CCC-EEEEEECCCCCCHHHHHHHH
T ss_conf 998-69999899999989999999
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.25 E-value=0.17 Score=24.64 Aligned_cols=102 Identities=16% Similarity=0.165 Sum_probs=46.8
Q ss_pred EEEEEECCCCCCCHHHHHHHH--HHHHHHH-CEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 999990799981049844876--5654440-6233379999924999999982993000166254219999999999836
Q 004609 353 VVVITGPNTGGKTASMKTLGL--ASLMSKA-GLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELV 429 (742)
Q Consensus 353 ~~~ItGpNg~GKSTlLK~iGL--l~~la~~-G~~vpa~~~~~i~~~d~il~~ig~~~~i~~~lStlSgg~krl~~i~~~~ 429 (742)
.++++||.|+||||+.+.++- ..--... ....-+........+...+..+ .... +.. ..
T Consensus 38 ~~ll~Gp~G~GKTt~a~~la~~l~~~~~~~~~~~~n~~~~~~~~~i~~~~~~~-----~~~~-~~~------------~~ 99 (224)
T d1sxjb2 38 HMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVVRNQIKHF-----AQKK-LHL------------PP 99 (224)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHHHHTHHHHH-----HHBC-CCC------------CT
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEHHHHHHHH-----HHHH-CCC------------CC
T ss_conf 49998899987054699999997256643221111134557852116678878-----8762-247------------77
Q ss_pred CCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHH
Q ss_conf 9993999807999999898999999999998338948999925823
Q 004609 430 SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD 475 (742)
Q Consensus 430 ~~~~LiLLDEp~~glDp~~g~aL~~all~~l~~~~~~viitTH~~~ 475 (742)
....++++||.-. +......+|.. .++.... ....+++|+...
T Consensus 100 ~~~kviiiDe~d~-~~~~~~~~ll~-~~e~~~~-~~~~i~~~~~~~ 142 (224)
T d1sxjb2 100 GKHKIVILDEADS-MTAGAQQALRR-TMELYSN-STRFAFACNQSN 142 (224)
T ss_dssp TCCEEEEEESGGG-SCHHHHHTTHH-HHHHTTT-TEEEEEEESCGG
T ss_pred CCEEEEEEECCCC-CCHHHHHHHHH-HCCCCCC-CEEEEECCCCHH
T ss_conf 6359999824432-32157787752-0112333-336653147430
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=85.93 E-value=0.26 Score=23.39 Aligned_cols=20 Identities=25% Similarity=0.399 Sum_probs=18.8
Q ss_pred EEEEEEECCCCCCCHHHHHH
Q ss_conf 39999907999810498448
Q 004609 352 RVVVITGPNTGGKTASMKTL 371 (742)
Q Consensus 352 ~~~~ItGpNg~GKSTlLK~i 371 (742)
.+++|+||-|+||||+-+.|
T Consensus 7 ~iI~i~G~pGSGKsT~a~~L 26 (194)
T d1qf9a_ 7 NVVFVLGGPGSGKGTQCANI 26 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
T ss_conf 48999899999889999999
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=85.89 E-value=0.31 Score=22.91 Aligned_cols=26 Identities=23% Similarity=0.410 Sum_probs=21.2
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHHCEEECC
Q ss_conf 9999907999810498448765654440623337
Q 004609 353 VVVITGPNTGGKTASMKTLGLASLMSKAGLYLPA 386 (742)
Q Consensus 353 ~~~ItGpNg~GKSTlLK~iGLl~~la~~G~~vpa 386 (742)
.++|+|+.++|||||++.+ .+...+.
T Consensus 4 ki~ivG~~~~GKTsLi~~l--------~~~~~~~ 29 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKF--------NGEDVDT 29 (165)
T ss_dssp EEEEECSTTSSHHHHHHHH--------TTCCCSS
T ss_pred EEEEECCCCCCHHHHHHHH--------CCCCCCC
T ss_conf 9999999998999999998--------0899873
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=85.65 E-value=0.74 Score=20.30 Aligned_cols=41 Identities=17% Similarity=0.037 Sum_probs=30.6
Q ss_pred EECCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 001553002782399999079998104984487656544406
Q 004609 340 PVPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAG 381 (742)
Q Consensus 340 ~v~vsl~l~~g~~~~~ItGpNg~GKSTlLK~iGLl~~la~~G 381 (742)
.++.=+.+.+| +.++|.|+-|.||||++..+.....-++.+
T Consensus 58 aID~l~pigkG-Qr~~If~~~g~GKt~l~~~i~~~~~~~~~~ 98 (276)
T d2jdid3 58 VVDLLAPYAKG-GKIGLFGGAGVGKTVLIMELINNVAKAHGG 98 (276)
T ss_dssp HHHHHSCEETT-CEEEEEECTTSSHHHHHHHHHHHHTTTCSS
T ss_pred EEEEECCCCCC-CEEEEECCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 03102563678-877766799989899999999988761799
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.63 E-value=0.11 Score=26.15 Aligned_cols=23 Identities=30% Similarity=0.268 Sum_probs=20.3
Q ss_pred CCCEEEEEEECCCCCCCHHHHHHH
Q ss_conf 782399999079998104984487
Q 004609 349 CETRVVVITGPNTGGKTASMKTLG 372 (742)
Q Consensus 349 ~g~~~~~ItGpNg~GKSTlLK~iG 372 (742)
+| -++.|+|+-|+||||+-+.++
T Consensus 18 ~g-~vI~L~G~pGSGKTTiAk~La 40 (195)
T d1x6va3 18 RG-CTVWLTGLSGAGKTTVSMALE 40 (195)
T ss_dssp CC-EEEEEESSCHHHHHHHHHHHH
T ss_pred CC-EEEEEECCCCCCHHHHHHHHH
T ss_conf 99-699988999999999999999
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=85.58 E-value=0.21 Score=24.09 Aligned_cols=20 Identities=25% Similarity=0.350 Sum_probs=17.3
Q ss_pred EEEEEECCCCCCCHHHHHHH
Q ss_conf 99999079998104984487
Q 004609 353 VVVITGPNTGGKTASMKTLG 372 (742)
Q Consensus 353 ~~~ItGpNg~GKSTlLK~iG 372 (742)
.++++|+-|+||||+-|.++
T Consensus 3 ~IvliG~~G~GKSTig~~La 22 (165)
T d2iyva1 3 KAVLVGLPGSGKSTIGRRLA 22 (165)
T ss_dssp SEEEECSTTSSHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHH
T ss_conf 48998899998899999999
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.42 E-value=0.29 Score=23.11 Aligned_cols=21 Identities=24% Similarity=0.407 Sum_probs=19.5
Q ss_pred CEEEEEEECCCCCCCHHHHHH
Q ss_conf 239999907999810498448
Q 004609 351 TRVVVITGPNTGGKTASMKTL 371 (742)
Q Consensus 351 ~~~~~ItGpNg~GKSTlLK~i 371 (742)
..+++|+||-||||||.-+.|
T Consensus 8 ~~iI~i~GppGSGKsT~a~~L 28 (196)
T d1ukza_ 8 VSVIFVLGGPGAGKGTQCEKL 28 (196)
T ss_dssp CEEEEEECSTTSSHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHH
T ss_conf 728999899999989999999
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.41 E-value=0.2 Score=24.22 Aligned_cols=19 Identities=26% Similarity=0.469 Sum_probs=17.9
Q ss_pred EEEEEECCCCCCCHHHHHH
Q ss_conf 9999907999810498448
Q 004609 353 VVVITGPNTGGKTASMKTL 371 (742)
Q Consensus 353 ~~~ItGpNg~GKSTlLK~i 371 (742)
.++|+|+.++|||||++.+
T Consensus 2 KI~liG~~nvGKSSLln~l 20 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHML 20 (166)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
T ss_conf 8999999999999999999
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=84.83 E-value=0.26 Score=23.46 Aligned_cols=20 Identities=25% Similarity=0.493 Sum_probs=18.7
Q ss_pred EEEEEEECCCCCCCHHHHHH
Q ss_conf 39999907999810498448
Q 004609 352 RVVVITGPNTGGKTASMKTL 371 (742)
Q Consensus 352 ~~~~ItGpNg~GKSTlLK~i 371 (742)
-+++|.|+-|+||||+-+.+
T Consensus 81 ~iIGIaG~sgSGKSTla~~L 100 (308)
T d1sq5a_ 81 YIISIAGSVAVGKSTTARVL 100 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHH
T ss_pred EEEEEECCCCCCCCHHHHHH
T ss_conf 89999689999876899999
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=84.68 E-value=0.27 Score=23.30 Aligned_cols=20 Identities=20% Similarity=0.434 Sum_probs=18.6
Q ss_pred EEEEEEECCCCCCCHHHHHH
Q ss_conf 39999907999810498448
Q 004609 352 RVVVITGPNTGGKTASMKTL 371 (742)
Q Consensus 352 ~~~~ItGpNg~GKSTlLK~i 371 (742)
..++|+|+-++|||||++++
T Consensus 24 ~~I~lvG~~n~GKSTLin~L 43 (195)
T d1svia_ 24 PEIALAGRSNVGKSSFINSL 43 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
T ss_conf 89999899998799999985
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=84.28 E-value=0.6 Score=20.91 Aligned_cols=122 Identities=17% Similarity=0.063 Sum_probs=54.5
Q ss_pred EEEEEECCCCCCCHHHHHHHHH-HHHHH------HCEEECCCC-CCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 9999907999810498448765-65444------062333799-999249999999829930001662542199999999
Q 004609 353 VVVITGPNTGGKTASMKTLGLA-SLMSK------AGLYLPAKN-HPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVD 424 (742)
Q Consensus 353 ~~~ItGpNg~GKSTlLK~iGLl-~~la~------~G~~vpa~~-~~~i~~~d~il~~ig~~~~i~~~lStlSgg~krl~~ 424 (742)
++.++||-|.|||++++.++-. .-.+. ...++.+.. ......+.......+... .......+.-.+.+..
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~ 125 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPI--QVRGAPALDILKALVD 125 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHHHHHHHHHHHHTCCC--CCTTCCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCC--CCCCCHHHHHHHHHHH
T ss_conf 89967899989999999999998754155567841663033334650467888765304323--3345127889999999
Q ss_pred HHHHCCCCCEEEECCCCC-----CCCHHHHHHHHHHHHHHHHC----CCCEEEEEECCHHHH
Q ss_conf 998369993999807999-----99989899999999999833----894899992582365
Q 004609 425 ILELVSRESLVLIDEIGS-----GTDPSEGVALATSILQYLRD----RVGLAVVTTHYADLS 477 (742)
Q Consensus 425 i~~~~~~~~LiLLDEp~~-----glDp~~g~aL~~all~~l~~----~~~~viitTH~~~l~ 477 (742)
.......+.++++||... +.....-..+.. +.+.+.. ....+++++.+.+..
T Consensus 126 ~~~~~~~~~~~iide~d~l~~~~~~~~~~~~~l~~-l~~~l~~~~~~~~~~~i~i~~~~~~~ 186 (287)
T d1w5sa2 126 NLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLR-VHEEIPSRDGVNRIGFLLVASDVRAL 186 (287)
T ss_dssp HHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHT-HHHHSCCTTSCCBEEEEEEEEETHHH
T ss_pred HHHHCCCCCCCCEEEEEEECCCCCCCHHHHHHHHH-HHHHCCHHHCCCCEEEEEECCCHHHH
T ss_conf 99854676654125788851566554267898899-98743201045651477624308999
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=84.12 E-value=0.26 Score=23.41 Aligned_cols=20 Identities=25% Similarity=0.416 Sum_probs=17.8
Q ss_pred EEEEEEECCCCCCCHHHHHH
Q ss_conf 39999907999810498448
Q 004609 352 RVVVITGPNTGGKTASMKTL 371 (742)
Q Consensus 352 ~~~~ItGpNg~GKSTlLK~i 371 (742)
-.++|.||-||||||..+.+
T Consensus 4 m~I~i~GppGsGKsT~a~~L 23 (189)
T d1zaka1 4 LKVMISGAPASGKGTQCELI 23 (189)
T ss_dssp CCEEEEESTTSSHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHH
T ss_conf 29999889999989999999
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=84.09 E-value=0.35 Score=22.52 Aligned_cols=19 Identities=21% Similarity=0.378 Sum_probs=17.5
Q ss_pred EEEEEECCCCCCCHHHHHH
Q ss_conf 9999907999810498448
Q 004609 353 VVVITGPNTGGKTASMKTL 371 (742)
Q Consensus 353 ~~~ItGpNg~GKSTlLK~i 371 (742)
.++++|+.++|||||++.+
T Consensus 4 ki~i~G~~~~GKTsLl~~l 22 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVI 22 (164)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
T ss_conf 9999999998989999999
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=83.88 E-value=0.29 Score=23.12 Aligned_cols=20 Identities=35% Similarity=0.444 Sum_probs=18.2
Q ss_pred EEEEEEECCCCCCCHHHHHH
Q ss_conf 39999907999810498448
Q 004609 352 RVVVITGPNTGGKTASMKTL 371 (742)
Q Consensus 352 ~~~~ItGpNg~GKSTlLK~i 371 (742)
+.++|+|+.++|||||++.+
T Consensus 1 k~V~ivG~~~~GKTsLl~~l 20 (207)
T d2fh5b1 1 RAVLFVGLCDSGKTLLFVRL 20 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
T ss_conf 98999999998989999999
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=83.85 E-value=0.096 Score=26.43 Aligned_cols=22 Identities=18% Similarity=0.428 Sum_probs=19.8
Q ss_pred CCCEEEEEEECCCCCCCHHHHHH
Q ss_conf 78239999907999810498448
Q 004609 349 CETRVVVITGPNTGGKTASMKTL 371 (742)
Q Consensus 349 ~g~~~~~ItGpNg~GKSTlLK~i 371 (742)
+| ...+++|+.|.|||||++.+
T Consensus 96 ~~-~~~vl~G~SGVGKSSLiN~L 117 (231)
T d1t9ha2 96 QD-KTTVFAGQSGVGKSSLLNAI 117 (231)
T ss_dssp TT-SEEEEEESHHHHHHHHHHHH
T ss_pred CC-CEEEEECCCCCCHHHHHHHH
T ss_conf 35-64999877873487898751
|
| >d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
Probab=83.82 E-value=0.89 Score=19.76 Aligned_cols=31 Identities=26% Similarity=0.234 Sum_probs=26.5
Q ss_pred EECCCCCCCCCCEEEEEEECCCCCCCHHHHHH
Q ss_conf 00155300278239999907999810498448
Q 004609 340 PVPIDIKVECETRVVVITGPNTGGKTASMKTL 371 (742)
Q Consensus 340 ~v~vsl~l~~g~~~~~ItGpNg~GKSTlLK~i 371 (742)
.++.=+.+.+| ..++|.|+.|.|||+++..+
T Consensus 57 ~ID~l~pig~G-Qr~~Ifg~~g~GKt~l~~~~ 87 (276)
T d1fx0a3 57 AIDAMIPVGRG-QRELIIGDRQTGKTAVATDT 87 (276)
T ss_dssp TTTTTSCCBTT-CBCBEEESSSSSHHHHHHHH
T ss_pred EEECCCCCCCC-CEEEECCCCCCCHHHHHHHH
T ss_conf 77501454677-66760067788857999997
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Probab=83.56 E-value=0.91 Score=19.69 Aligned_cols=21 Identities=19% Similarity=0.248 Sum_probs=16.9
Q ss_pred CCCCCEEEEEEECCCCCCCHHH
Q ss_conf 0278239999907999810498
Q 004609 347 VECETRVVVITGPNTGGKTASM 368 (742)
Q Consensus 347 l~~g~~~~~ItGpNg~GKSTlL 368 (742)
+.+| +..+|.+|.|+|||+..
T Consensus 6 ~~~~-~~~lv~~~TGsGKT~~~ 26 (305)
T d2bmfa2 6 FRKK-RLTIMDLHPGAGKTKRY 26 (305)
T ss_dssp SSTT-CEEEECCCTTSSTTTTH
T ss_pred HHCC-CCEEEEECCCCCHHHHH
T ss_conf 6469-94999979999787999
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=83.48 E-value=0.32 Score=22.79 Aligned_cols=23 Identities=30% Similarity=0.469 Sum_probs=19.6
Q ss_pred CCCCEEEEEEECCCCCCCHHHHHH
Q ss_conf 278239999907999810498448
Q 004609 348 ECETRVVVITGPNTGGKTASMKTL 371 (742)
Q Consensus 348 ~~g~~~~~ItGpNg~GKSTlLK~i 371 (742)
.+. -.++|+|..++|||||++.+
T Consensus 13 ~k~-~kI~vvG~~~~GKSsLi~rl 35 (177)
T d1zj6a1 13 HQE-HKVIIVGLDNAGKTTILYQF 35 (177)
T ss_dssp TSC-EEEEEEESTTSSHHHHHHHH
T ss_pred CCE-EEEEEECCCCCCHHHHHHHH
T ss_conf 985-79999999998989999999
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.24 E-value=0.32 Score=22.85 Aligned_cols=20 Identities=25% Similarity=0.348 Sum_probs=18.5
Q ss_pred EEEEEEECCCCCCCHHHHHH
Q ss_conf 39999907999810498448
Q 004609 352 RVVVITGPNTGGKTASMKTL 371 (742)
Q Consensus 352 ~~~~ItGpNg~GKSTlLK~i 371 (742)
-+++|+||-||||||.-+.|
T Consensus 2 ~iI~i~GppGSGKsT~a~~L 21 (194)
T d1teva_ 2 LVVFVLGGPGAGKGTQCARI 21 (194)
T ss_dssp EEEEEECCTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
T ss_conf 39999799999989999999
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=83.20 E-value=0.94 Score=19.59 Aligned_cols=118 Identities=12% Similarity=0.006 Sum_probs=55.0
Q ss_pred CCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCE-EECCCCCCCCHHHHHHHHHCCCC------------CCCCCCCC
Q ss_conf 027823999990799981049844876565444062-33379999924999999982993------------00016625
Q 004609 347 VECETRVVVITGPNTGGKTASMKTLGLASLMSKAGL-YLPAKNHPRLPWFDLILADIGDH------------QSLEQNLS 413 (742)
Q Consensus 347 l~~g~~~~~ItGpNg~GKSTlLK~iGLl~~la~~G~-~vpa~~~~~i~~~d~il~~ig~~------------~~i~~~lS 413 (742)
+.+| +..+|.+|-|+|||+..-.. ++......+. .+...+ .-...++....+... .......-
T Consensus 4 l~~~-~~~il~~~tGsGKT~~~~~~-~~~~~~~~~~~vli~~p--~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (140)
T d1yksa1 4 LKKG-MTTVLDFHPGAGKTRRFLPQ-ILAECARRRLRTLVLAP--TRVVLSEMKEAFHGLDVKFHTQAFSAHGSGREVID 79 (140)
T ss_dssp TSTT-CEEEECCCTTSSTTTTHHHH-HHHHHHHTTCCEEEEES--SHHHHHHHHHHTTTSCEEEESSCCCCCCCSSCCEE
T ss_pred HHCC-CCEEEECCCCCCHHHHHHHH-HHHHHHHCCCEEEEEEC--CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHH
T ss_conf 8759-96799817998855999999-99975313851565312--10688999987532432201120001223333002
Q ss_pred CCHHHH-HHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHH-CCCCEEEEEE
Q ss_conf 421999-999999983699939998079999998989999999999983-3894899992
Q 004609 414 TFSGHI-SRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLR-DRVGLAVVTT 471 (742)
Q Consensus 414 tlSgg~-krl~~i~~~~~~~~LiLLDEp~~glDp~~g~aL~~all~~l~-~~~~~viitT 471 (742)
...... .+...-.....+-++|++||-= .+++....+.. +++.+. ..+..++.-|
T Consensus 80 ~~~~~~l~~~~~~~~~~~~~~lvIiDEaH-~~~~~~~~~~~--~~~~~~~~~~~~~l~lT 136 (140)
T d1yksa1 80 AMCHATLTYRMLEPTRVVNWEVIIMDEAH-FLDPASIAARG--WAAHRARANESATILMT 136 (140)
T ss_dssp EEEHHHHHHHHTSSSCCCCCSEEEETTTT-CCSHHHHHHHH--HHHHHHHTTSCEEEEEC
T ss_pred HHHHHHHHHHHHCCCCCCCEEEEEECCCC-CCCHHHHHHHH--HHHHHHHCCCCCEEEEE
T ss_conf 42699999998416654642089975433-46754399999--99998257999989998
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=83.07 E-value=0.37 Score=22.40 Aligned_cols=23 Identities=26% Similarity=0.319 Sum_probs=19.1
Q ss_pred CCCCEEEEEEECCCCCCCHHHHHH
Q ss_conf 278239999907999810498448
Q 004609 348 ECETRVVVITGPNTGGKTASMKTL 371 (742)
Q Consensus 348 ~~g~~~~~ItGpNg~GKSTlLK~i 371 (742)
++| -.++|+||-|+||||.-+.|
T Consensus 1 p~~-~riil~G~pGSGKsT~a~~L 23 (190)
T d1ak2a1 1 PKG-VRAVLLGPPGAGKGTQAPKL 23 (190)
T ss_dssp CCC-CEEEEECCTTSSHHHHHHHH
T ss_pred CCC-CEEEEECCCCCCHHHHHHHH
T ss_conf 996-38999899999889999999
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=83.01 E-value=0.33 Score=22.72 Aligned_cols=20 Identities=20% Similarity=0.484 Sum_probs=18.5
Q ss_pred EEEEEEECCCCCCCHHHHHH
Q ss_conf 39999907999810498448
Q 004609 352 RVVVITGPNTGGKTASMKTL 371 (742)
Q Consensus 352 ~~~~ItGpNg~GKSTlLK~i 371 (742)
-.++|+|+.|+||||+++.+
T Consensus 7 ~KilllG~~~vGKTsll~~~ 26 (221)
T d1azta2 7 HRLLLLGAGESGKSTIVKQM 26 (221)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
T ss_conf 77999989999889999989
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=82.66 E-value=0.33 Score=22.77 Aligned_cols=77 Identities=16% Similarity=0.192 Sum_probs=41.2
Q ss_pred EEEEEEECCCCCCCHHHHHHHHHHHHHHHCEE-ECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 39999907999810498448765654440623-33799999249999999829930001662542199999999998369
Q 004609 352 RVVVITGPNTGGKTASMKTLGLASLMSKAGLY-LPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVS 430 (742)
Q Consensus 352 ~~~~ItGpNg~GKSTlLK~iGLl~~la~~G~~-vpa~~~~~i~~~d~il~~ig~~~~i~~~lStlSgg~krl~~i~~~~~ 430 (742)
..+++.||-|.||||+.++++-. ++.. ...++ ..+. ..+.. ...+.....
T Consensus 36 ~~~Ll~GPpG~GKTtla~~la~~-----~~~~~~~~~~-~~~~----------------------~~~~~-~~~~~~~~~ 86 (239)
T d1ixsb2 36 EHLLLFGPPGLGKTTLAHVIAHE-----LGVNLRVTSG-PAIE----------------------KPGDL-AAILANSLE 86 (239)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH-----HTCCEEEEET-TTCC----------------------SHHHH-HHHHHTTCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHH-----HCCCEEECCC-CCCC----------------------CCHHH-HHHHHHHCC
T ss_conf 73898897998788899999998-----4987475468-7534----------------------32146-899885103
Q ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHH
Q ss_conf 9939998079999998989999999999
Q 004609 431 RESLVLIDEIGSGTDPSEGVALATSILQ 458 (742)
Q Consensus 431 ~~~LiLLDEp~~glDp~~g~aL~~all~ 458 (742)
..+++++||.-. ..+.....+..++.+
T Consensus 87 ~~~i~~iDe~~~-~~~~~~~~l~~~~e~ 113 (239)
T d1ixsb2 87 EGDILFIDEIHR-LSRQAEEHLYPAMED 113 (239)
T ss_dssp TTCEEEEETGGG-CCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCC-CCHHHHHHHHHHHHH
T ss_conf 887344311001-104478750012433
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=82.16 E-value=0.4 Score=22.15 Aligned_cols=20 Identities=15% Similarity=0.503 Sum_probs=18.3
Q ss_pred EEEEEEECCCCCCCHHHHHH
Q ss_conf 39999907999810498448
Q 004609 352 RVVVITGPNTGGKTASMKTL 371 (742)
Q Consensus 352 ~~~~ItGpNg~GKSTlLK~i 371 (742)
.+++|||+-||||||..+.+
T Consensus 2 ~iIgiTG~igSGKsTva~~l 21 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFI 21 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHH
T ss_conf 89999799998899999999
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.98 E-value=0.38 Score=22.32 Aligned_cols=20 Identities=20% Similarity=0.461 Sum_probs=18.0
Q ss_pred EEEEEEECCCCCCCHHHHHH
Q ss_conf 39999907999810498448
Q 004609 352 RVVVITGPNTGGKTASMKTL 371 (742)
Q Consensus 352 ~~~~ItGpNg~GKSTlLK~i 371 (742)
=+++|.|+-|+||||+-+.|
T Consensus 28 ~iIGi~G~qGSGKSTl~~~l 47 (286)
T d1odfa_ 28 LFIFFSGPQGSGKSFTSIQI 47 (286)
T ss_dssp EEEEEECCTTSSHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHH
T ss_conf 89983799878899999999
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=81.95 E-value=0.38 Score=22.32 Aligned_cols=112 Identities=14% Similarity=0.111 Sum_probs=50.3
Q ss_pred EEEEEEECCCCCCCHHHHHHHHHHHHHHHCEEECCC----CCCCC---HH--HHH-HHHHCCCCCCCCCCCCCCHHHHH-
Q ss_conf 399999079998104984487656544406233379----99992---49--999-99982993000166254219999-
Q 004609 352 RVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAK----NHPRL---PW--FDL-ILADIGDHQSLEQNLSTFSGHIS- 420 (742)
Q Consensus 352 ~~~~ItGpNg~GKSTlLK~iGLl~~la~~G~~vpa~----~~~~i---~~--~d~-il~~ig~~~~i~~~lStlSgg~k- 420 (742)
-.++|+|..|+||||++++| .|..+... +..+- .. .+. -+..++.....+. ........
T Consensus 33 l~I~LvG~tg~GKSSliN~i--------lg~~~~~vs~~~~~T~~~~~~~~~~~g~~i~viDTPGl~~~--~~~~~~~~~ 102 (257)
T d1h65a_ 33 LTILVMGKGGVGKSSTVNSI--------IGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEG--GYINDMALN 102 (257)
T ss_dssp EEEEEEESTTSSHHHHHHHH--------HTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEET--TEECHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH--------HCCCCEEECCCCCCCEEEEEEEEEECCEEEEEEEEECCCCC--CCHHHHHHH
T ss_conf 48999899998699999998--------58984133588976046789889863388999752134677--524899999
Q ss_pred HHHHHHHHCCCCCEEEECCCCC-CCCHHHHHHHHHHHHHHHHCC--CCEEEEEECCH
Q ss_conf 9999998369993999807999-999898999999999998338--94899992582
Q 004609 421 RIVDILELVSRESLVLIDEIGS-GTDPSEGVALATSILQYLRDR--VGLAVVTTHYA 474 (742)
Q Consensus 421 rl~~i~~~~~~~~LiLLDEp~~-glDp~~g~aL~~all~~l~~~--~~~viitTH~~ 474 (742)
.+...........++++..+.. ..+..+...+.. +.+.+-+. ..++++.||-.
T Consensus 103 ~i~~~~~~~~~~~il~v~~~~~~r~~~~~~~~l~~-l~~~fg~~~~~~~ivv~t~~D 158 (257)
T d1h65a_ 103 IIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKA-ITDSFGKGIWNKAIVALTHAQ 158 (257)
T ss_dssp HHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHH-HHHHHCGGGGGGEEEEEECCS
T ss_pred HHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHH-HHHHCCHHHHHCEEEEEECCC
T ss_conf 99999856898769999978887789999999999-998732656638899998864
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=81.84 E-value=0.39 Score=22.26 Aligned_cols=20 Identities=35% Similarity=0.617 Sum_probs=18.5
Q ss_pred EEEEEEECCCCCCCHHHHHH
Q ss_conf 39999907999810498448
Q 004609 352 RVVVITGPNTGGKTASMKTL 371 (742)
Q Consensus 352 ~~~~ItGpNg~GKSTlLK~i 371 (742)
-+++|.||-|+||||.-+.|
T Consensus 4 piI~I~GppGSGKgT~ak~L 23 (225)
T d1ckea_ 4 PVITIDGPSGAGKGTLCKAM 23 (225)
T ss_dssp CEEEEECCTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
T ss_conf 88997799988989999999
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=81.68 E-value=0.4 Score=22.17 Aligned_cols=20 Identities=30% Similarity=0.424 Sum_probs=18.1
Q ss_pred EEEEEEECCCCCCCHHHHHH
Q ss_conf 39999907999810498448
Q 004609 352 RVVVITGPNTGGKTASMKTL 371 (742)
Q Consensus 352 ~~~~ItGpNg~GKSTlLK~i 371 (742)
=.++|+|+.++|||||++.+
T Consensus 6 ~kI~ivG~~~vGKSSLi~~~ 25 (169)
T d1upta_ 6 MRILILGLDGAGKTTILYRL 25 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHH
T ss_conf 29999999998999999999
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=81.60 E-value=0.4 Score=22.13 Aligned_cols=19 Identities=21% Similarity=0.368 Sum_probs=17.2
Q ss_pred EEEEEECCCCCCCHHHHHH
Q ss_conf 9999907999810498448
Q 004609 353 VVVITGPNTGGKTASMKTL 371 (742)
Q Consensus 353 ~~~ItGpNg~GKSTlLK~i 371 (742)
.++|+||-||||||.-+.|
T Consensus 2 ~I~i~G~pGSGKsT~a~~L 20 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKI 20 (182)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
T ss_conf 8999889999989999999
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=81.53 E-value=0.41 Score=22.11 Aligned_cols=19 Identities=26% Similarity=0.508 Sum_probs=17.5
Q ss_pred EEEEEECCCCCCCHHHHHH
Q ss_conf 9999907999810498448
Q 004609 353 VVVITGPNTGGKTASMKTL 371 (742)
Q Consensus 353 ~~~ItGpNg~GKSTlLK~i 371 (742)
.++|+|+-++|||||++.+
T Consensus 2 kivlvG~~~vGKSsLi~~l 20 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKL 20 (160)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
T ss_conf 8999999998989999999
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=81.07 E-value=0.45 Score=21.78 Aligned_cols=24 Identities=25% Similarity=0.314 Sum_probs=21.6
Q ss_pred CCCCCEEEEEEECCCCCCCHHHHHH
Q ss_conf 0278239999907999810498448
Q 004609 347 VECETRVVVITGPNTGGKTASMKTL 371 (742)
Q Consensus 347 l~~g~~~~~ItGpNg~GKSTlLK~i 371 (742)
..+| .++.+.|+=|+||||+.|.+
T Consensus 30 ~~~g-~ii~L~G~LGaGKTtfvr~~ 53 (158)
T d1htwa_ 30 TEKA-IMVYLNGDLGAGKTTLTRGM 53 (158)
T ss_dssp CSSC-EEEEEECSTTSSHHHHHHHH
T ss_pred CCCC-EEEEEECCCCCCHHHHHHHH
T ss_conf 7998-29999668776588999998
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=80.86 E-value=0.44 Score=21.85 Aligned_cols=19 Identities=32% Similarity=0.651 Sum_probs=17.5
Q ss_pred EEEEEECCCCCCCHHHHHH
Q ss_conf 9999907999810498448
Q 004609 353 VVVITGPNTGGKTASMKTL 371 (742)
Q Consensus 353 ~~~ItGpNg~GKSTlLK~i 371 (742)
+++|.||-|+||||.-+.|
T Consensus 5 ~IaIdGp~GsGKgT~ak~L 23 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKII 23 (223)
T ss_dssp EEEEECSSCSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
T ss_conf 9997899987989999999
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=80.73 E-value=0.45 Score=21.83 Aligned_cols=21 Identities=33% Similarity=0.425 Sum_probs=18.9
Q ss_pred EEEEEEECCCCCCCHHHHHHH
Q ss_conf 399999079998104984487
Q 004609 352 RVVVITGPNTGGKTASMKTLG 372 (742)
Q Consensus 352 ~~~~ItGpNg~GKSTlLK~iG 372 (742)
-+++++|+.|+||||+-+.|+
T Consensus 3 ~li~l~GlpgsGKSTla~~L~ 23 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLT 23 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
T ss_conf 899998999999999999999
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=80.37 E-value=0.49 Score=21.53 Aligned_cols=19 Identities=32% Similarity=0.483 Sum_probs=17.9
Q ss_pred EEEEEECCCCCCCHHHHHH
Q ss_conf 9999907999810498448
Q 004609 353 VVVITGPNTGGKTASMKTL 371 (742)
Q Consensus 353 ~~~ItGpNg~GKSTlLK~i 371 (742)
.++|+|+-++|||||++.+
T Consensus 2 ~V~liG~~n~GKSsLi~~L 20 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKL 20 (171)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
T ss_conf 8999999999899999999
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=80.33 E-value=0.47 Score=21.65 Aligned_cols=20 Identities=35% Similarity=0.694 Sum_probs=18.5
Q ss_pred EEEEEEECCCCCCCHHHHHH
Q ss_conf 39999907999810498448
Q 004609 352 RVVVITGPNTGGKTASMKTL 371 (742)
Q Consensus 352 ~~~~ItGpNg~GKSTlLK~i 371 (742)
-.++|+|+-++|||||++.+
T Consensus 4 p~V~lvG~~n~GKTSLln~l 23 (209)
T d1nrjb_ 4 PSIIIAGPQNSGKTSLLTLL 23 (209)
T ss_dssp CEEEEECSTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
T ss_conf 89999999998899999999
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=80.28 E-value=1.2 Score=18.89 Aligned_cols=103 Identities=13% Similarity=0.064 Sum_probs=50.9
Q ss_pred CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH-HHHHHHH
Q ss_conf 782399999079998104984487656544406233379999924999999982993000166254219999-9999998
Q 004609 349 CETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILE 427 (742)
Q Consensus 349 ~g~~~~~ItGpNg~GKSTlLK~iGLl~~la~~G~~vpa~~~~~i~~~d~il~~ig~~~~i~~~lStlSgg~k-rl~~i~~ 427 (742)
.+ ..+++.||||+|||++.+.+.-.. .. +-... ..+-. +..+ -...+-++- .+...+.
T Consensus 14 ~~-~~~l~~G~~g~gk~~~a~~l~~~i----~~-~~~~h--~D~~~-------i~~~------~~~I~Id~IR~i~~~~~ 72 (198)
T d2gnoa2 14 EG-ISILINGEDLSYPREVSLELPEYV----EK-FPPKA--SDVLE-------IDPE------GENIGIDDIRTIKDFLN 72 (198)
T ss_dssp SS-EEEEEECSSSSHHHHHHHHHHHHH----HT-SCCCT--TTEEE-------ECCS------SSCBCHHHHHHHHHHHT
T ss_pred CC-CEEEEECCCCCCHHHHHHHHHHHH----HC-CCCCC--CCEEE-------EECC------CCCCCHHHHHHHHHHHH
T ss_conf 98-559988989988899999999998----43-45679--98899-------8077------67899899999999996
Q ss_pred H---CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHH
Q ss_conf 3---69993999807999999898999999999998338948999925823
Q 004609 428 L---VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD 475 (742)
Q Consensus 428 ~---~~~~~LiLLDEp~~glDp~~g~aL~~all~~l~~~~~~viitTH~~~ 475 (742)
. ..+..++++||.- .+......+|.. ++|.-. .+...+++|++.+
T Consensus 73 ~~~~~~~~KviIId~ad-~l~~~aqNaLLK-~LEEPp-~~t~fiLit~~~~ 120 (198)
T d2gnoa2 73 YSPELYTRKYVIVHDCE-RMTQQAANAFLK-ALEEPP-EYAVIVLNTRRWH 120 (198)
T ss_dssp SCCSSSSSEEEEETTGG-GBCHHHHHHTHH-HHHSCC-TTEEEEEEESCGG
T ss_pred HCCCCCCCEEEEEECCC-CCCHHHHHHHHH-HHHCCC-CCCEEEECCCCHH
T ss_conf 17545898799994731-036666647888-773789-8852222069956
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=80.14 E-value=0.43 Score=21.91 Aligned_cols=22 Identities=27% Similarity=0.490 Sum_probs=18.5
Q ss_pred EEEEEEECCCCCCCHHHHHHHH
Q ss_conf 3999990799981049844876
Q 004609 352 RVVVITGPNTGGKTASMKTLGL 373 (742)
Q Consensus 352 ~~~~ItGpNg~GKSTlLK~iGL 373 (742)
..+++.||-|+|||.+-|+++-
T Consensus 50 ~~iLl~GPpG~GKT~lAkalA~ 71 (309)
T d1ofha_ 50 KNILMIGPTGVGKTEIARRLAK 71 (309)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
T ss_conf 6699989999888899999862
|