Citrus Sinensis ID: 004619

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-
MANKSASPSSLPKSGAVSRGYNFASTWEQNAPLSEQQQAAIGSLFHVVAERPFPVNLAQEHVPGQDNGLSVATKDHSFGESDAIEAVLVNTNQFYNWFTDLELAMKSETEEKYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFAEAVQSKLKYFDELENIAASFYSPNMNVGNGNFFHLLKRLDECILYVEGNPQYAESSVYLLKFRQLQSRALGMIRSHVLSVLKSASSQVQAAIRSSGGSKTSVSEGVEASLIYVRFKAAASELKPVLEEIESRSSKKEYVQILEECHKLYCEQRLSLVKGIVQQRISEFSKKETLPSLTRSGCAYLMQVCQLEHQLFDHFFPSSSEDISSLAPLIDPLSTFLYDILRPKLIHETNVDLLCELVDILKVEVLGEQLSRRSESLAGLRPTLERILADVHERLTFRARTHIRDEIANYIPSDEDLNYPSKLEQSAGTKLETTPADENPDVYKTWYPPLEKTVSCLSKLYQCLEQAVFTGLAQEAVEVCSESIQKASKLIAKRSTPMDGQLFLIKYLLILREQIAPFDIEFSVTHKELDFSHLLEHLRRILRGQASLFDWSRSTSLARTLSPRVLESQIDAKKELEKSLKATCEEFIMAVTKLVVDPMLSFVAKVTAVKVALSSGNQNQNVDSLMAKPLKDQAFATPDKVAELVHKVNAAIQQELPPVMAKMKLYLQNPSTRTILFKPVK
cccccccccccccccccccccccHHHHHccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHccccccccccccccHHccccHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHcccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHcccHHHHHHcccccc
cccccccccccccccccccccccHHHHHccccccHHHHHHHHHHHHHHHcccccccccHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHcHHHHccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHcccHHHHHHHHcccccccccccccHHHccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccEEEEEcccEEcHHHHHHHHHHHHHcccccccccccHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHEEEEcccc
manksaspsslpksgavsrgynfastweqnaplseQQQAAIGSLFHVvaerpfpvnlaqehvpgqdnglsvatkdhsfgesDAIEAVLVNTNQFYNWFTDLELAMKSETEEKYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFAEAVQSKLKYFDELENIAasfyspnmnvgngnFFHLLKRLDECIlyvegnpqyaESSVYLLKFRQLQSRALGMIRSHVLSVLKSASSQVQAAIRSsggsktsvseGVEASLIYVRFKAAASELKPVLEEIESRSSKKEYVQILEECHKLYCEQRLSLVKGIVQQRISefskketlpsltrsGCAYLMQVCQLEHqlfdhffpsssedisslaplidplstflydilrpklihETNVDLLCELVDILKVEVLGEQLSRRSESLAGLRPTLERILADVHERLTFRARTHIRDEianyipsdedlnypskleqsagtklettpadenpdvyktwypplekTVSCLSKLYQCLEQAVFTGLAQEAVEVCSESIQKASKLIAkrstpmdgQLFLIKYLLILREqiapfdiefsvthkeldFSHLLEHLRRILRGQaslfdwsrstslartlsprvLESQIDAKKELEKSLKATCEEFIMAVTKLVVDPMLSFVAKVTAVKVALSsgnqnqnvdslmakplkdqafatPDKVAELVHKVNAAIQQELPPVMAKMKLYlqnpstrtilfkpvk
manksaspsslpksgaVSRGYNFASTWEQNAPLSEQQQAAIGSLFHVVAERPFPVNLAQEHVPGQDNGLSVATKDHSFGESDAIEAVLVNTNQFYNWFTDLELAMKSETEEKYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFAEAVQSKLKYFDELENIAASFYSPNMNVGNGNFFHLLKRLDECILYVEGNPQYAESSVYLLKFRQLQSRALGMIRSHVLSVLKSASSQVQAAIrssggsktsvseGVEASLIYVRFKAAASELKpvleeiesrsskKEYVQILEECHKLYCEQRLSLVKGIVQQRisefskketlpslTRSGCAYLMQVCQLEHQLFDHFFPSSSEDISSLAPLIDPLSTFLYDILRPKLIHETNVDLLCELVDILKVEVLgeqlsrrseslaglrptlERILADVHERLTFRARTHIRDEIanyipsdedlnypSKLEQSAGtklettpadenpdvYKTWYPPLEKTVSCLSKLYQCLEQAVFTGLAQEAVEVCSESIQKASKLiakrstpmdGQLFLIKYLLILREQIAPFDIEFSVTHKELDFSHLLEHLRRILRGQaslfdwsrstslartlsprvlesQIDAKKELEKSLKATCEEFIMAVTKLVVDPMLSFVAKVTAVKVALSSGNQNQNVDSLMAKPLKDQAFATPDKVAELVHKVNAAIQQELPPVMAKMKLYlqnpstrtilfkpvk
MANKSASPSSLPKSGAVSRGYNFASTWEQNAPLSEQQQAAIGSLFHVVAERPFPVNLAQEHVPGQDNGLSVATKDHSFGESDAIEAVLVNTNQFYNWFTDLELAMKSETEEKYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFAEAVQSKLKYFDELENIAASFYSPNMNVGNGNFFHLLKRLDECILYVEGNPQYAESSVYLLKFRQLQSRALGMIRSHVLSVLKSASSQVQAAIRSSGGSKTSVSEGVEASLIYVRFKAAASELKPVLEEIESRSSKKEYVQILEECHKLYCEQRLSLVKGIVQQRISEFSKKETLPSLTRSGCAYLMQVCQLEHQLFDHFFPSSSEDISSLAPLIDPLSTFLYDILRPKLIHETNVDLLCELVDILKVEVLGEQLSRRSESLAGLRPTLERILADVHERLTFRARTHIRDEIANYIPSDEDLNYPSKLEQSAGTKLETTPADENPDVYKTWYPPLEKTVSCLSKLYQCLEQAVFTGLAQEAVEVCSESIQKASKLIAKRSTPMDGQLFLIKYLLILREQIAPFDIEFSVTHKELDFSHLLEHLRRILRGQASLFDWSRSTSLARTLSPRVLESQIDAKKELEKSLKATCEEFIMAVTKLVVDPMLSFVAKVTAVKVALSSGNQNQNVDSLMAKPLKDQAFATPDKVAELVHKVNAAIQQELPPVMAKMKLYLQNPSTRTILFKPVK
**************************************AAIGSLFHVVAERPFPVNLAQ******************FGESDAIEAVLVNTNQFYNWFTDLELAMKSETEEKYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFAEAVQSKLKYFDELENIAASFYSPNMNVGNGNFFHLLKRLDECILYVEGNPQYAESSVYLLKFRQLQSRALGMIRSHV******************************ASLIYVRFKAAASELKPVL**********EYVQILEECHKLYCEQRLSLVKGIVQQRISEFSKKETLPSLTRSGCAYLMQVCQLEHQLFDHFFPSSSEDISSLAPLIDPLSTFLYDILRPKLIHETNVDLLCELVDILKVEVLGEQLSR***SLAGLRPTLERILADVHERLTFRARTHIRDEIANYIP****************************DVYKTWYPPLEKTVSCLSKLYQCLEQAVFTGLAQEAVEVCSESIQKASKLIAKRSTPMDGQLFLIKYLLILREQIAPFDIEFSVTHKELDFSHLLEHLRRILRGQASLFDWSRSTSLART******************SLKATCEEFIMAVTKLVVDPMLSFVAKVTAVKVAL*************************DKVAELVHKVNAAIQQELPPVMAKMKLYLQN*****I******
*************************TWEQNAPLSEQQQAAIGSLFHVVAER**************************************NTNQFYNWFTDLELAM**ETEEKYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFAEAVQSKLKYFDELENIAASFYS****VGNGNFFHLLKRLDECILYVEGNPQYAESSVYLLKFRQLQSRALGMIRSHVLSVLKSAS********************VEASLIYVRFKAAASELKPVLEEIESRSSKKEYVQILEECHKLYCEQRLSLVKGIVQQRISEFSKKETLPSLTRSGCAYLMQVCQLEHQLFDHFFPSSSEDISSLAPLIDPLSTFLYDILRPKLIHETNVDLLCELVDILKVEV*************GLRPTLERILADVHERLTFRARTHIRDEIANYIPSDEDLN***********************VYKTWYPPLEKTVSCLSKLYQCLEQAVFTGLAQEAVEVCSESIQK***********MDGQLFLIKYLLILREQIAPFDIEFSVTHKELDFSHLLEHLRRILRGQASLFD**RSTSLA***********IDAKKELEKSLKATCEEFIMAVTKLVVDPMLSFVAKVTA*************************AFATPDKVAELVHKVNAAIQQELPPVMAKMKLYLQNPSTRTILFKPVK
*****************SRGYNFASTWEQNAPLSEQQQAAIGSLFHVVAERPFPVNLAQEHVPGQDNGLSVATKDHSFGESDAIEAVLVNTNQFYNWFTDLELAMKSETEEKYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFAEAVQSKLKYFDELENIAASFYSPNMNVGNGNFFHLLKRLDECILYVEGNPQYAESSVYLLKFRQLQSRALGMIRSHVLSVL***********************GVEASLIYVRFKAAASELKPVLEEIESRSSKKEYVQILEECHKLYCEQRLSLVKGIVQQRISEFSKKETLPSLTRSGCAYLMQVCQLEHQLFDHFFPSSSEDISSLAPLIDPLSTFLYDILRPKLIHETNVDLLCELVDILKVEVLGEQLSRRSESLAGLRPTLERILADVHERLTFRARTHIRDEIANYIPSDEDLNYPSKLEQSAGTKLETTPADENPDVYKTWYPPLEKTVSCLSKLYQCLEQAVFTGLAQEAVEVCSESIQKASKLIAKRSTPMDGQLFLIKYLLILREQIAPFDIEFSVTHKELDFSHLLEHLRRILRGQASLFDWSRSTSLARTLSPRVLESQIDAKKELEKSLKATCEEFIMAVTKLVVDPMLSFVAKVTAVKVALSSGNQNQNVDSLMAKPLKDQAFATPDKVAELVHKVNAAIQQELPPVMAKMKLYLQNPSTRTILFKPVK
**********************FASTWEQNAPLSEQQQAAIGSLFHVVAERPFPVNLA****************************VLVNTNQFYNWFTDLELAMKSETEEKYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFAEAVQSKLKYFDELENIAASFYSPNMNVGNGNFFHLLKRLDECILYVEGNPQYAESSVYLLKFRQLQSRALGMIRSHVLSVLKSASSQVQAAIRSSGGSKTSVSEGVEASLIYVRFKAAASELKPVLEEIESRSSKKEYVQILEECHKLYCEQRLSLVKGIVQQRISEFSKKETLPSLTRSGCAYLMQVCQLEHQLFDHFFPSSSEDISSLAPLIDPLSTFLYDILRPKLIHETNVDLLCELVDILKVEVLGEQLSRRSESLAGLRPTLERILADVHERLTFRARTHIRDEIANYIPSDEDLNYPSKLEQSAG*********ENPDVYKTWYPPLEKTVSCLSKLYQCLEQAVFTGLAQEAVEVCSESIQKASKLIAKRSTPMDGQLFLIKYLLILREQIAPFDIEFSVTHKELDFSHLLEHLRRILRGQASLFDWSRSTSLARTLSPRVLESQIDAKKELEKSLKATCEEFIMAVTKLVVDPMLSFVAKVTAVKVALSSGNQNQNVDSLMAKPLKDQAFATPDKVAELVHKVNAAIQQELPPVMAKMKLYLQNPSTRTILFKPVK
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MANKSASPSSLPKSGAVSRGYNFASTWEQNAPLSEQQQAAIGSLFHVVAERPFPVNLAQEHVPGQDNGLSVATKDHSFGESDAIEAVLVNTNQFYNWFTDLELAMKSETEEKYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFAEAVQSKLKYFDELENIAASFYSPNMNVGNGNFFHLLKRLDECILYVEGNPQYAESSVYLLKFRQLQSRALGMIRSHVLSVLKSASSQVQAAIRSSGGSKTSVSEGVEASLIYVRFKAAASELKPVLEEIESRSSKKEYVQILEECHKLYCEQRLSLVKGIVQQRISEFSKKETLPSLTRSGCAYLMQVCQLEHQLFDHFFPSSSEDISSLAPLIDPLSTFLYDILRPKLIHETNVDLLCELVDILKVEVLGEQLSRRSESLAGLRPTLERILADVHERLTFRARTHIRDEIANYIPSDEDLNYPSKLEQSAGTKLETTPADENPDVYKTWYPPLEKTVSCLSKLYQCLEQAVFTGLAQEAVEVCSESIQKASKLIAKRSTPMDGQLFLIKYLLILREQIAPFDIEFSVTHKELDFSHLLEHLRRILRGQASLFDWSRSTSLARTLSPRVxxxxxxxxxxxxxxxxxxxxxFIMAVTKLVVDPMLSFVAKVTAVKVALSSGNQNQNVDSLMAKPLKDQAFATPDKVAELVHKVNAAIQQELPPVMAKMKLYLQNPSTRTILFKPVK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query741 2.2.26 [Sep-21-2011]
Q96JB2828 Conserved oligomeric Golg yes no 0.854 0.764 0.354 1e-118
Q8CI04820 Conserved oligomeric Golg yes no 0.937 0.847 0.336 1e-117
Q16ZN9 899 Conserved oligomeric Golg N/A no 0.943 0.777 0.314 1e-108
Q961G1 905 Conserved oligomeric Golg yes no 0.871 0.713 0.311 1e-104
Q29N70 914 Conserved oligomeric Golg yes no 0.873 0.707 0.305 1e-102
Q54TT4 925 Conserved oligomeric Golg yes no 0.952 0.763 0.297 6e-98
P40094801 Conserved oligomeric Golg yes no 0.696 0.644 0.249 4e-40
Q9Y7Z4735 Conserved oligomeric Golg yes no 0.688 0.693 0.237 7e-37
>sp|Q96JB2|COG3_HUMAN Conserved oligomeric Golgi complex subunit 3 OS=Homo sapiens GN=COG3 PE=1 SV=3 Back     alignment and function desciption
 Score =  426 bits (1096), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 247/696 (35%), Positives = 386/696 (55%), Gaps = 63/696 (9%)

Query: 93  QFYNWFTDLELAMKSETEEKYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVA 152
           QF++WF  L+  M  +   KYR   + L G  + CD IL  V+  L     LQ Q+  V+
Sbjct: 107 QFFSWFAKLQTQMDQDEGTKYRQMRDYLSGFQEQCDAILNDVNSALQHLESLQKQYLFVS 166

Query: 153 TKTKTLHDACDRLVIEKQRLIEFAEAVQSKLKYFDELENIAASFYSPNMNVGNGNFFHLL 212
            KT TLH+AC++L+ E+  L++ AE +Q KL YF+ELE I     SP ++V +  F  +L
Sbjct: 167 NKTGTLHEACEQLLKEQSELVDLAENIQQKLSYFNELETINTKLNSPTLSVNSDGFIPML 226

Query: 213 KRLDECILYVEGNPQYAESSVYLLKFRQLQSRALGMIRSHVLSVLKSASSQVQAAIRSSG 272
            +LD+CI Y+  +P + +  +YLLKF+Q  S+AL +++++ ++ L++ +SQ+   ++   
Sbjct: 227 AKLDDCITYISSHPNFKDYPIYLLKFKQCLSKALHLMKTYTVNTLQTLTSQL---LKRDP 283

Query: 273 GSKTSVSEGVEASLIYVRFKAAASELKPVLEEIESRSSK-KEYVQILEECHKLYCEQRLS 331
            S  +       +L YV+F+AAA +++ ++E+IE RS K  EY Q+L + H+ Y +QR  
Sbjct: 284 SSVPNADNAF--TLFYVKFRAAAPKVRTLIEQIELRSEKIPEYQQLLNDIHQCYLDQREL 341

Query: 332 LVKGIVQQRISEFSKKETLP--SLTRSGCAYLMQVCQLEHQLFDHFFPSSSEDISSLAPL 389
           L+   +   ++E + +      +L RSGCA+++ VCQ EHQL++ FF   ++  S L  L
Sbjct: 342 LLGPSIACTVAELTSQNNRDHCALVRSGCAFMVHVCQDEHQLYNEFF---TKPTSKLDEL 398

Query: 390 IDPLSTFLYDILRPKLIHETNVDLLCELVDILKVEVLGEQLSRRSESLAGLRPTLERILA 449
           ++ L   LYD+ RP +IH  +++ L EL  ILK EVL + +   +E L      ++++L 
Sbjct: 399 LEKLCVSLYDVFRPLIIHVIHLETLSELCGILKNEVLEDHVQNNAEQLGAFAAGVKQMLE 458

Query: 450 DVHERLTFRARTHIRDEIANYIPSDEDLNYPSKL-------------------------- 483
           DV ERL +R   +I+ +I  Y P+  DL YP KL                          
Sbjct: 459 DVQERLVYRTHIYIQTDITGYKPAPGDLAYPDKLVMMEQIAQSLKDEQKKVPSEASFSDV 518

Query: 484 --EQSAGTKLETTPADE--NP---------DVYKTWYPPLEKTVSCLSKLYQCLEQAVFT 530
             E+     L  + + E  NP         D++  WYP + +T+ CLSKLY+C+++AVF 
Sbjct: 519 HLEEGESNSLTKSGSTESLNPRPQTTISPADLHGMWYPTVRRTLVCLSKLYRCIDRAVFQ 578

Query: 531 GLAQEAVEVCSESIQKASKLIAKRSTPMDGQLFLIKYLLILREQIAPFDIEFSVTHKELD 590
           GL+QEA+  C +S+  AS+ I+K  T +DGQLFLIK+LLILREQIAPF  EF++    LD
Sbjct: 579 GLSQEALSACIQSLLGASESISKNKTQIDGQLFLIKHLLILREQIAPFHTEFTIKEISLD 638

Query: 591 FSHLLEHLRRILRGQA--SLFDWSRSTSLARTL---SPRVLESQIDAKKELEKSLKATCE 645
                +   +IL        F  + + +L   L   +P + E  +D+KK++++ LK+ CE
Sbjct: 639 LKKTRDAAFKILNPMTVPRFFRLNSNNALIEFLLEGTPEIREHYLDSKKDVDRHLKSACE 698

Query: 646 EFIMAVTKLVVDPMLSFVAKVTAVKVALSSGNQNQNVDSLMAKPLKDQAFATPDKVAELV 705
           +FI   TKL V+ +  F+ KV+A+K   S G             L  Q +A P KV +L 
Sbjct: 699 QFIQQQTKLFVEQLEEFMTKVSALKTMASQGGPKYT--------LSQQPWAQPAKVNDLA 750

Query: 706 HKVNAAIQQELPPVMAKMKLYLQNPSTRTILFKPVK 741
                 I+ +LP  +  M LYL N  T  ILFKPV+
Sbjct: 751 ATAYKTIKTKLPVTLRSMSLYLSNKDTEFILFKPVR 786
Involved in ER-Golgi transport.
Homo sapiens (taxid: 9606)
>sp|Q8CI04|COG3_MOUSE Conserved oligomeric Golgi complex subunit 3 OS=Mus musculus GN=Cog3 PE=1 SV=3 Back     alignment and function description
>sp|Q16ZN9|COG3_AEDAE Conserved oligomeric Golgi complex subunit 3 OS=Aedes aegypti GN=Cog3 PE=3 SV=1 Back     alignment and function description
>sp|Q961G1|COG3_DROME Conserved oligomeric Golgi complex subunit 3 OS=Drosophila melanogaster GN=Cog3 PE=1 SV=1 Back     alignment and function description
>sp|Q29N70|COG3_DROPS Conserved oligomeric Golgi complex subunit 3 OS=Drosophila pseudoobscura pseudoobscura GN=Cog3 PE=3 SV=1 Back     alignment and function description
>sp|Q54TT4|COG3_DICDI Conserved oligomeric Golgi complex subunit 3 OS=Dictyostelium discoideum GN=cog3 PE=3 SV=1 Back     alignment and function description
>sp|P40094|COG3_YEAST Conserved oligomeric Golgi complex subunit 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=COG3 PE=1 SV=1 Back     alignment and function description
>sp|Q9Y7Z4|COG3_SCHPO Conserved oligomeric Golgi complex subunit 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cog3 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query741
359484460783 PREDICTED: conserved oligomeric Golgi co 0.998 0.945 0.856 0.0
297839205784 hypothetical protein ARALYDRAFT_895203 [ 1.0 0.945 0.827 0.0
30698937784 sec34-like protein [Arabidopsis thaliana 1.0 0.945 0.823 0.0
22654989784 At1g73430/T9L24_16 [Arabidopsis thaliana 1.0 0.945 0.822 0.0
356547986783 PREDICTED: conserved oligomeric Golgi co 0.990 0.937 0.820 0.0
356565620782 PREDICTED: LOW QUALITY PROTEIN: conserve 0.990 0.938 0.817 0.0
357479305783 Conserved oligomeric Golgi complex subun 0.990 0.937 0.804 0.0
357479307781 Conserved oligomeric Golgi complex subun 0.987 0.937 0.802 0.0
449449220779 PREDICTED: conserved oligomeric Golgi co 0.998 0.949 0.784 0.0
242079365740 hypothetical protein SORBIDRAFT_07g02213 0.985 0.986 0.766 0.0
>gi|359484460|ref|XP_002273836.2| PREDICTED: conserved oligomeric Golgi complex subunit 3-like [Vitis vinifera] gi|297738499|emb|CBI27744.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1328 bits (3436), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 635/741 (85%), Positives = 690/741 (93%), Gaps = 1/741 (0%)

Query: 1   MANKSASPSSLPKSGAVSRGYNFASTWEQNAPLSEQQQAAIGSLFHVVAERPFPVNLAQE 60
           MA K AS ++LPKS A+S+GYNFASTWEQNAPL+EQQQAAI +L H VAERPFP NL+ E
Sbjct: 1   MATKPAS-ATLPKSAAISKGYNFASTWEQNAPLTEQQQAAIATLSHAVAERPFPANLSHE 59

Query: 61  HVPGQDNGLSVATKDHSFGESDAIEAVLVNTNQFYNWFTDLELAMKSETEEKYRHYVNTL 120
           H+ G++NGLSV TKD+++ +S AIE VLVNTNQFY WFTDLE AMKSETEEKYRHYVNTL
Sbjct: 60  HISGRENGLSVNTKDNTWEDSGAIETVLVNTNQFYKWFTDLESAMKSETEEKYRHYVNTL 119

Query: 121 MGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFAEAVQ 180
             RIQTCDDIL QVD TLDLFNELQLQH AVATKTKTLHDACDRL++EKQRLIEFAEA++
Sbjct: 120 TERIQTCDDILHQVDATLDLFNELQLQHQAVATKTKTLHDACDRLLVEKQRLIEFAEALR 179

Query: 181 SKLKYFDELENIAASFYSPNMNVGNGNFFHLLKRLDECILYVEGNPQYAESSVYLLKFRQ 240
           SKL YFDELEN+A SFYSPNMNVGN NF  LLKRLDECI YVE NPQYAESSVYL+KFRQ
Sbjct: 180 SKLNYFDELENVATSFYSPNMNVGNENFLPLLKRLDECISYVESNPQYAESSVYLVKFRQ 239

Query: 241 LQSRALGMIRSHVLSVLKSASSQVQAAIRSSGGSKTSVSEGVEASLIYVRFKAAASELKP 300
           LQSRALGMIRSHV+SVLKSASSQVQAAIRSSGGSK +VSE VEAS+IYVRFKAAASELKP
Sbjct: 240 LQSRALGMIRSHVVSVLKSASSQVQAAIRSSGGSKAAVSESVEASVIYVRFKAAASELKP 299

Query: 301 VLEEIESRSSKKEYVQILEECHKLYCEQRLSLVKGIVQQRISEFSKKETLPSLTRSGCAY 360
           +LE+IESRSS+KEYVQIL ECH+LYCEQR SL++GIV QRISEF+KKE LPSLTRSGCAY
Sbjct: 300 LLEDIESRSSRKEYVQILSECHRLYCEQRFSLIRGIVHQRISEFAKKEALPSLTRSGCAY 359

Query: 361 LMQVCQLEHQLFDHFFPSSSEDISSLAPLIDPLSTFLYDILRPKLIHETNVDLLCELVDI 420
           LMQVCQLEHQLFDHFFPSSSEDIS+LAPLIDPL T+LYD LRPKLIHETN+D LCEL+DI
Sbjct: 360 LMQVCQLEHQLFDHFFPSSSEDISNLAPLIDPLCTYLYDTLRPKLIHETNLDFLCELIDI 419

Query: 421 LKVEVLGEQLSRRSESLAGLRPTLERILADVHERLTFRARTHIRDEIANYIPSDEDLNYP 480
           LKVEVLGEQ+SRR ESLAGLRPTL RILADVHERLTFRARTHIRDEIANY+PS++DL+YP
Sbjct: 420 LKVEVLGEQISRRGESLAGLRPTLHRILADVHERLTFRARTHIRDEIANYLPSEDDLDYP 479

Query: 481 SKLEQSAGTKLETTPADENPDVYKTWYPPLEKTVSCLSKLYQCLEQAVFTGLAQEAVEVC 540
           +KLEQSA +K  TT ADENPDV+KTWYPPLEKT+SCLSKLY+CLE AVFTGLAQEAVEVC
Sbjct: 480 AKLEQSAESKSGTTSADENPDVFKTWYPPLEKTLSCLSKLYRCLEPAVFTGLAQEAVEVC 539

Query: 541 SESIQKASKLIAKRSTPMDGQLFLIKYLLILREQIAPFDIEFSVTHKELDFSHLLEHLRR 600
           S SIQKASKL+ KRS+PMDGQLFLIK+LLILREQIAPFDIEFSVTHKELDFSHLLEHLRR
Sbjct: 540 SLSIQKASKLVVKRSSPMDGQLFLIKHLLILREQIAPFDIEFSVTHKELDFSHLLEHLRR 599

Query: 601 ILRGQASLFDWSRSTSLARTLSPRVLESQIDAKKELEKSLKATCEEFIMAVTKLVVDPML 660
           ILRGQASLFDWSRSTSLARTLSPRVLESQIDAKKELEKSLKATCEEFIM+VTKLVVDPML
Sbjct: 600 ILRGQASLFDWSRSTSLARTLSPRVLESQIDAKKELEKSLKATCEEFIMSVTKLVVDPML 659

Query: 661 SFVAKVTAVKVALSSGNQNQNVDSLMAKPLKDQAFATPDKVAELVHKVNAAIQQELPPVM 720
           SFV KVTAVKVALSSG+QNQ +DS+MAKPLKDQAFATPDKVAELV KV+A++QQELP VM
Sbjct: 660 SFVTKVTAVKVALSSGSQNQKLDSVMAKPLKDQAFATPDKVAELVQKVSASLQQELPKVM 719

Query: 721 AKMKLYLQNPSTRTILFKPVK 741
            KMKLYLQNPSTRTILFKP+K
Sbjct: 720 EKMKLYLQNPSTRTILFKPIK 740

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297839205|ref|XP_002887484.1| hypothetical protein ARALYDRAFT_895203 [Arabidopsis lyrata subsp. lyrata] gi|297333325|gb|EFH63743.1| hypothetical protein ARALYDRAFT_895203 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|30698937|ref|NP_177485.2| sec34-like protein [Arabidopsis thaliana] gi|186495067|ref|NP_001117595.1| sec34-like protein [Arabidopsis thaliana] gi|332197338|gb|AEE35459.1| sec34-like protein [Arabidopsis thaliana] gi|332197339|gb|AEE35460.1| sec34-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|22654989|gb|AAM98086.1| At1g73430/T9L24_16 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356547986|ref|XP_003542385.1| PREDICTED: conserved oligomeric Golgi complex subunit 3-like [Glycine max] Back     alignment and taxonomy information
>gi|356565620|ref|XP_003551037.1| PREDICTED: LOW QUALITY PROTEIN: conserved oligomeric Golgi complex subunit 3-like [Glycine max] Back     alignment and taxonomy information
>gi|357479305|ref|XP_003609938.1| Conserved oligomeric Golgi complex subunit [Medicago truncatula] gi|355510993|gb|AES92135.1| Conserved oligomeric Golgi complex subunit [Medicago truncatula] Back     alignment and taxonomy information
>gi|357479307|ref|XP_003609939.1| Conserved oligomeric Golgi complex subunit [Medicago truncatula] gi|355510994|gb|AES92136.1| Conserved oligomeric Golgi complex subunit [Medicago truncatula] Back     alignment and taxonomy information
>gi|449449220|ref|XP_004142363.1| PREDICTED: conserved oligomeric Golgi complex subunit 3-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|242079365|ref|XP_002444451.1| hypothetical protein SORBIDRAFT_07g022130 [Sorghum bicolor] gi|241940801|gb|EES13946.1| hypothetical protein SORBIDRAFT_07g022130 [Sorghum bicolor] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query741
TAIR|locus:2206890784 AT1G73430 "AT1G73430" [Arabido 1.0 0.945 0.823 0.0
UNIPROTKB|J9P4I0830 COG3 "Uncharacterized protein" 0.604 0.539 0.337 6.8e-117
RGD|1304555828 Cog3 "component of oligomeric 0.634 0.567 0.331 4.7e-116
UNIPROTKB|F1LLY2802 Cog3 "Protein Cog3" [Rattus no 0.634 0.586 0.331 4.7e-116
UNIPROTKB|E2RN33833 COG3 "Uncharacterized protein" 0.604 0.537 0.337 6e-116
ZFIN|ZDB-GENE-050913-26824 cog3 "component of oligomeric 0.518 0.466 0.387 5.4e-115
UNIPROTKB|Q96JB2828 COG3 "Conserved oligomeric Gol 0.627 0.561 0.327 1.8e-114
MGI|MGI:2450151820 Cog3 "component of oligomeric 0.600 0.542 0.337 4.3e-113
UNIPROTKB|E1BGA6832 COG3 "Uncharacterized protein" 0.628 0.560 0.334 3.8e-112
UNIPROTKB|Q16ZN9 899 Cog3 "Conserved oligomeric Gol 0.601 0.496 0.327 2.7e-107
TAIR|locus:2206890 AT1G73430 "AT1G73430" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 3126 (1105.5 bits), Expect = 0., P = 0.
 Identities = 611/742 (82%), Positives = 675/742 (90%)

Query:     1 MANKSASPSSLPKSGAVSRGYNFASTWEQNAPLSEQQQAAIGSLFHVVAERPFPVNLAQE 60
             MA K+AS SSLPKSGA+S+GYNFASTWEQ+APL+EQQQAAI SL H VAERPFP NL  E
Sbjct:     1 MATKAASSSSLPKSGAISKGYNFASTWEQSAPLTEQQQAAIVSLSHAVAERPFPANLVHE 60

Query:    61 HVPGQDNGLSVATKDHSFGESDAIEAVLVNTNQFYNWFTDLELAMKSETEEKYRHYVNTL 120
             HV   +NGLSV+ +D   G+S AIEAVLVNTNQFY WFTDLE AMKSETEEKYRHYV+TL
Sbjct:    61 HVHRPENGLSVSVEDTHLGDSGAIEAVLVNTNQFYKWFTDLESAMKSETEEKYRHYVSTL 120

Query:   121 MGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFAEAVQ 180
               RIQTCD+IL QVD TLDLFNELQLQH  V TKTKTLHDACDRL++EKQ+L+EFAEA++
Sbjct:   121 TERIQTCDNILHQVDETLDLFNELQLQHQGVTTKTKTLHDACDRLLMEKQKLMEFAEALR 180

Query:   181 SKLKYFDELENIAASFYSPNMNVGNGNFFHLLKRLDECILYVEGNPQYAESSVYLLKFRQ 240
             SKL YFDELEN++++FYSPNMNV N NF  LLKRLDECI Y+E NPQYAESSVYLLKFRQ
Sbjct:   181 SKLNYFDELENVSSNFYSPNMNVSNSNFLPLLKRLDECISYIEDNPQYAESSVYLLKFRQ 240

Query:   241 LQSRALGMIRSHVLSVLKSASSQVQAAIRSSGGSKTSVSEGVEASLIYVRFKAAASELKP 300
             LQSRALGMIR+++L+VLK+A+SQVQAA R +GG+KTSVSEGVEAS+IYVRFKAAA+ELKP
Sbjct:   241 LQSRALGMIRTYILAVLKTAASQVQAAFRGTGGNKTSVSEGVEASVIYVRFKAAANELKP 300

Query:   301 VLEEIESRSSKKEYVQILEECHKLYCEQRLSLVKGIVQQRISEFSKKETLPSLTRSGCAY 360
             VLEEIESRS++KEYVQIL ECH+LYCEQRLSLVKGIV QR+S+F+KKE LPSLTRSGCAY
Sbjct:   301 VLEEIESRSARKEYVQILAECHRLYCEQRLSLVKGIVHQRVSDFAKKEALPSLTRSGCAY 360

Query:   361 LMQVCQLEHQLFDHFFPSSSEDISSLAPLIDPLSTFLYDILRPKLIHETNVDLLCELVDI 420
             LMQVC +EHQLF HFFP+SSE++SSLAPL+DPLST+LYDILRPKLIHE N+DLLCELV I
Sbjct:   361 LMQVCHMEHQLFTHFFPASSEEVSSLAPLVDPLSTYLYDILRPKLIHEANIDLLCELVHI 420

Query:   421 LKVEVLGEQLSRRSESLAGLRPTLERILADVHERLTFRARTHIRDEIANYIPSDEDLNYP 480
             LKVEVLG+Q +R+SE LAGLRPTL+RILADV+ERLTFRART+IRDEIANY PSDEDL+YP
Sbjct:   421 LKVEVLGDQSARQSEPLAGLRPTLQRILADVNERLTFRARTYIRDEIANYTPSDEDLDYP 480

Query:   481 SKLEQSAGTKLETTPAD-ENPDVYKTWYPPLEKTVSCLSKLYQCLEQAVFTGLAQEAVEV 539
             +KLE S  T  ET   D EN DV+KTWYPPLEKT+SCLSKLY+CLEQAVFTGLAQEAVEV
Sbjct:   481 AKLEGSPNTTSETDLRDDENADVFKTWYPPLEKTLSCLSKLYRCLEQAVFTGLAQEAVEV 540

Query:   540 CSESIQKASKLIAKRSTPMDGQLFLIKYLLILREQIAPFDIEFSVTHKELDFSHLLEHLR 599
             CS SIQKASKLI KRST MDGQLFLIK+LLILREQIAPFDIEFSVTHKELDFSHLLEHLR
Sbjct:   541 CSLSIQKASKLIIKRSTTMDGQLFLIKHLLILREQIAPFDIEFSVTHKELDFSHLLEHLR 600

Query:   600 RILRGQASLFDWSRSTSLARTLSPRVLESQIDAKKELEKSLKATCEEFIMAVTKLVVDPM 659
             RILRGQASLFDWSRSTSLARTLSPRVLESQIDAKKELEK LK TCEEFIM+VTKLVVDPM
Sbjct:   601 RILRGQASLFDWSRSTSLARTLSPRVLESQIDAKKELEKCLKTTCEEFIMSVTKLVVDPM 660

Query:   660 LSFVAKVTAVKVALSSGNQNQNVDSLMAKPLKDQAFATPDKVAELVHKVNAAIQQELPPV 719
             LSFV KVTA+KVALSSG QN  VDS+MAKPLK+QAFATPDKV ELV KV AAIQQEL P+
Sbjct:   661 LSFVTKVTAIKVALSSGTQNHKVDSVMAKPLKEQAFATPDKVVELVQKVYAAIQQELLPI 720

Query:   720 MAKMKLYLQNPSTRTILFKPVK 741
             +AKMKLYLQNPSTRTILFKP+K
Sbjct:   721 LAKMKLYLQNPSTRTILFKPIK 742
GO:0003674 "molecular_function" evidence=ND
GO:0005794 "Golgi apparatus" evidence=ISM
GO:0005801 "cis-Golgi network" evidence=IEA
GO:0006886 "intracellular protein transport" evidence=IEA
GO:0016020 "membrane" evidence=IEA
GO:0005829 "cytosol" evidence=IDA
UNIPROTKB|J9P4I0 COG3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
RGD|1304555 Cog3 "component of oligomeric golgi complex 3" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1LLY2 Cog3 "Protein Cog3" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E2RN33 COG3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050913-26 cog3 "component of oligomeric golgi complex 3" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q96JB2 COG3 "Conserved oligomeric Golgi complex subunit 3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:2450151 Cog3 "component of oligomeric golgi complex 3" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E1BGA6 COG3 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q16ZN9 Cog3 "Conserved oligomeric Golgi complex subunit 3" [Aedes aegypti (taxid:7159)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8CI04COG3_MOUSENo assigned EC number0.33630.93790.8475yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query741
pfam04136157 pfam04136, Sec34, Sec34-like family 3e-32
>gnl|CDD|112929 pfam04136, Sec34, Sec34-like family Back     alignment and domain information 
 Score =  122 bits (307), Expect = 3e-32
 Identities = 49/153 (32%), Positives = 82/153 (53%)

Query: 112 KYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQR 171
                +N L      CD IL Q +        L+ ++  V+ KT  L +AC++L  E+ R
Sbjct: 1   DAEKKINYLQTFTNICDQILGQTNNAESTLLSLKEKYEFVSKKTSELSEACEQLSTEQMR 60

Query: 172 LIEFAEAVQSKLKYFDELENIAASFYSPNMNVGNGNFFHLLKRLDECILYVEGNPQYAES 231
           L E A+ +Q  L YF  LE +     SP ++V + +F   L +LD CI+Y+E NP + +S
Sbjct: 61  LSELADGIQKGLTYFAPLEELNRVLRSPTLSVASVSFKEHLTKLDTCIMYIEENPDFKDS 120

Query: 232 SVYLLKFRQLQSRALGMIRSHVLSVLKSASSQV 264
             YL K++Q  S+A+ + + + + ++K  + QV
Sbjct: 121 PHYLGKYKQCLSKAMDLFKPYFIRIIKQTTDQV 153

Sec34 and Sec35 form a sub-complex, in a seven protein complex that includes Dor1 (pfam04124). This complex is thought to be important for tether vesicles to the Golgi. Length = 157

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 741
KOG2604733 consensus Subunit of cis-Golgi transport vesicle t 100.0
PF04136157 Sec34: Sec34-like family ; InterPro: IPR007265 Sec 100.0
PF06419618 COG6: Conserved oligomeric complex COG6; InterPro: 98.88
KOG3758655 consensus Uncharacterized conserved protein [Funct 97.57
PF09763701 Sec3_C: Exocyst complex component Sec3; InterPro: 97.45
PF04129508 Vps52: Vps52 / Sac2 family ; InterPro: IPR007258 V 96.8
KOG2604733 consensus Subunit of cis-Golgi transport vesicle t 96.62
KOG1961683 consensus Vacuolar sorting protein VPS52/suppresso 91.04
PF06008264 Laminin_I: Laminin Domain I; InterPro: IPR009254 L 82.5
COG3883265 Uncharacterized protein conserved in bacteria [Fun 81.42
>KOG2604 consensus Subunit of cis-Golgi transport vesicle tethering complex - Sec34p [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=1.7e-143  Score=1191.15  Aligned_cols=707  Identities=41%  Similarity=0.664  Sum_probs=641.9

Q ss_pred             CCCcccccccchHhhhhhhCCCCHHHHHHHHHHHHhhccCCCCccccccCCCCCCCCCcccccCCCCCCCcchhhhhcCh
Q 004619           12 PKSGAVSRGYNFASTWEQNAPLSEQQQAAIGSLFHVVAERPFPVNLAQEHVPGQDNGLSVATKDHSFGESDAIEAVLVNT   91 (741)
Q Consensus        12 ~~~~~~~~~~~~~~~We~~apLs~~q~~~i~~l~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~   91 (741)
                      +..+|.++.+.....|+..|||+|.|+..+..+.++..++|-|+.++.++.+.+...      |-.+     +..++.++
T Consensus         3 ~~~~ar~~~~~~~~~~~~~a~l~e~q~~~~l~~~~~~~~~~~p~~l~~e~~~s~~~~------d~~l-----~~~~~~~~   71 (733)
T KOG2604|consen    3 DQREARSRLNYWDRETDNDAPLPEQQTLENLELVHALSKEPRPSLLPIENSSSLTSQ------DISL-----GEENLTNT   71 (733)
T ss_pred             chhHHHHHhhhhhcccccCCCCcHHHHHHHHHHHHHHHhCCCcccccccccccCCCC------CccC-----Ccccccch
Confidence            455677788888888888999999999999999999999999999888754221111      2222     24678899


Q ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 004619           92 NQFYNWFTDLELAMKSETEEKYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQR  171 (741)
Q Consensus        92 ~~F~~w~~~~e~~~~~~~~~~y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~~  171 (741)
                      .+|+.||+++...|...++.+|+.|+++|+...++|+.+|+|++++++.|.+|..+|++|+.||++||++||+|+.||.+
T Consensus        72 ~~f~~wf~~~~~~~~~~~~~~y~~y~d~l~~~~~~c~~il~q~~~~~~~l~sl~~k~~~vs~kt~~l~eace~l~~eq~k  151 (733)
T KOG2604|consen   72 NQFLSWFTDLMNPIKQISRPKYRIYLDQLKKRIEECDAILDQTNNALDTLLSLQKKFEFVSQKTSALHEACEQLLEEQSK  151 (733)
T ss_pred             hhhhHHHHhhhhHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcccchhhHHHHHHhhCCCCCccCCccHHHHHHHHHHHHHHhhhCCCCcChHHHHHHHHHHHHHHHHHHHH
Q 004619          172 LIEFAEAVQSKLKYFDELENIAASFYSPNMNVGNGNFFHLLKRLDECILYVEGNPQYAESSVYLLKFRQLQSRALGMIRS  251 (741)
Q Consensus       172 L~~~ae~I~~~L~yF~~Ld~itr~l~sp~~~V~~~~F~~~L~~LD~ci~Fl~~hp~fkda~~Y~~rfkq~ltRAl~LIr~  251 (741)
                      |.++|+.|+.+|+||++||+++|+||+|+.+|++.+|.+||.+||+||.|+++||+|||++.|+.||||||+|||+|||+
T Consensus       152 l~elae~I~k~L~yF~~le~l~~~l~~pt~~v~~~sF~~~l~~ld~ci~~l~en~~fkd~~~Y~~k~kqcL~kA~~lik~  231 (733)
T KOG2604|consen  152 LSELAEGIRKKLHYFAELEELNRRLNHPTLSVGKVSFKEMLAKLDECIMFLEENPDFKDAPAYLGKYKQCLSKALGLIKT  231 (733)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHhhcCcchhhhhhhHHHHHHHHHHHHHHHHhCCchhhhHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCCCCCcchhhhhhHHHHHHHHHhHHHHHHHHHhhhChhHHhHHHHHHHHHHHHHHhh
Q 004619          252 HVLSVLKSASSQVQAAIRSSGGSKTSVSEGVEASLIYVRFKAAASELKPVLEEIESRSSKKEYVQILEECHKLYCEQRLS  331 (741)
Q Consensus       252 ~~~~~L~~~~~~v~~~l~~~~~~~~~~s~~~~~aLlY~kF~~~a~~l~~Li~eie~R~~~~Ey~slL~dc~~~Yf~~R~~  331 (741)
                      |++|+|++++++|.++-++     .....+..++++|+||.++|+++|+++++||+|+.++||.++|.+||+.||++|.+
T Consensus       232 y~~~vlkq~t~q~l~~~~~-----~~~~~~~~~sl~Y~kf~aaa~~~k~~i~eie~rs~~~e~~qlL~~~~~~Y~~qRl~  306 (733)
T KOG2604|consen  232 YFTNVLKQTTSQVLKRSKN-----MNPHADLAFSLFYVKFSAAAHKLKPVIEEIEKRSEKEEYDQILAECHQHYFQQRLR  306 (733)
T ss_pred             HHHHHHHHHHHHHhccCCC-----CCCccchhhhhhhhHHHHHHhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999998765221     12233677899999999999999999999999998899999999999999999999


Q ss_pred             hhhHHHHHHHHHHhccCCchhhHHhHHHHHHHHHHHHHHhhccccCCCccChhchhhhHHHHHHHHHHhhcccccccCCH
Q 004619          332 LVKGIVQQRISEFSKKETLPSLTRSGCAYLMQVCQLEHQLFDHFFPSSSEDISSLAPLIDPLSTFLYDILRPKLIHETNV  411 (741)
Q Consensus       332 LL~p~i~~~l~~~~~~~~l~~l~r~~~~~l~~~C~~E~~Lf~~FF~~~~~~~~~l~~~le~Lc~~LYd~lRp~Ii~~~~L  411 (741)
                      |++|+|+.+|.+++..+++|+++|+||+||+++|.||++||.+||+.+   ...+..|+++||.++||..||+|+|+.|+
T Consensus       307 ll~pvi~~~i~~~~~~~~~~s~~rsg~afl~~~c~dE~kLf~Eff~~~---~f~~~~~~~~lc~~lyd~~r~~ilh~~~l  383 (733)
T KOG2604|consen  307 LLKPVIDYHIKEFFVKKDLCSLIRSGCAYLQQTCADENKLFREFFIMG---DFKLMHYLENLCQSLYDNSRPLILHEKHL  383 (733)
T ss_pred             ccCcchHHHHHHHHHhcchHHHHHHHHHHHHHHHhhHHHHHHhhcCCC---chHHHHHHHHhchHhhcchhhHHHHHHHH
Confidence            999999999999998889999999999999999999999999999887   36799999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhhhhcchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccCCCchhhhhccCCCC
Q 004619          412 DLLCELVDILKVEVLGEQLSRRSESLAGLRPTLERILADVHERLTFRARTHIRDEIANYIPSDEDLNYPSKLEQSAGTKL  491 (741)
Q Consensus       412 ~~Lcel~~iL~~e~l~e~~~~~~~~~~~~~~~~~~lLqD~QeRLiFRaq~yi~~~I~~Y~P~~~DL~yP~kL~~~~~~~~  491 (741)
                      ++||+.|++++.++++++.+   ....+++..++||++|+||||+||+|+||+++|.+|+|++|||+||+|+++......
T Consensus       384 ~tL~e~~si~~~~~le~~~~---~~~~~~~~~~~~il~dvqeRL~fr~~~yiq~dI~~y~Pt~~dL~~~~k~~~~~~~~~  460 (733)
T KOG2604|consen  384 ETLCEVCSILQSEQLEEHVQ---ERLDAFAEFLNPILQDVQERLVFRVQTYIQTDIQNYSPTEEDLAYPAKLEMSEFILQ  460 (733)
T ss_pred             HHHHHHHHhhccHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhcCCCChhhccchHHHHhhHHHHh
Confidence            99999999999999988765   333378999999999999999999999999999999999999999999998532111


Q ss_pred             C---CCCC------CCCccccccCCchHHHHHHHHHhhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchh
Q 004619          492 E---TTPA------DENPDVYKTWYPPLEKTVSCLSKLYQCLEQAVFTGLAQEAVEVCSESIQKASKLIAKRSTPMDGQL  562 (741)
Q Consensus       492 ~---~~~~------~~~~~~~~~wYPpl~ktL~lLSkly~~v~~~VF~~LA~eaV~~Ci~SL~~A~~~I~~~~~~~Dg~L  562 (741)
                      +   .++.      ......-.+| |||+|||.||||||||||+.||+|+||+++|.||+||.+|++.|+++++++||+|
T Consensus       461 ~l~~~D~e~~~~~~~~~~~~~~s~-p~v~kTL~~LSklYrcids~vf~~lA~~~~~~CI~Sl~~A~~~i~knk~~lDa~L  539 (733)
T KOG2604|consen  461 SLRLSDEEKLDSDVPQKSAMTESW-PPVRKTLVCLSKLYRCIDSPVFDGLAQEALEDCIQSLSGAYKDISKNKTKLDAEL  539 (733)
T ss_pred             hccCCchhhhcchhhhhhccccCC-chHHHHHHHHHHHHHHhccHhhhhHHHHHHHHHHHHHHhHHHHhhhccccccchh
Confidence            0   0100      1122334567 9999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhHHHHhhhccccccccccccccccchhhHHHHHHHHhccCccccccchhhhhh---hcccchhchhhhhHHHHHHH
Q 004619          563 FLIKYLLILREQIAPFDIEFSVTHKELDFSHLLEHLRRILRGQASLFDWSRSTSLAR---TLSPRVLESQIDAKKELEKS  639 (741)
Q Consensus       563 FlIKhLLiLReQi~~Fdi~f~~~e~~lDFs~~~~~~~~ll~~~~~lf~~ss~~~l~~---~~~P~v~e~~~Dsk~eld~~  639 (741)
                      |+|||||||||||+||+|+|+++|+++|||++++++++++.+...+|+++++|++++   .++|+|+++++|+|+|||.+
T Consensus       540 fliKhLLiLReQiapFriq~tv~e~~lDfs~v~~a~~~vl~~~~~~f~ls~~nallell~E~tp~v~e~~lDsrkeld~q  619 (733)
T KOG2604|consen  540 FLIKHLLILREQIAPFRIQFTVKETSLDFSKVREAFRSVLSNTSKWFSLSSNNALLELLRELTPKVRESQLDSRKELDQQ  619 (733)
T ss_pred             hHHHHHHHHHHhccccceeeeeccccccHHHHHHHHHHHHhcccchhhcccchHHHHHHHHcChHHHHhhhhHHHHHHHH
Confidence            999999999999999999999999999999999999999999888999999988766   55999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhcCCCCcccchhcccccccccccChhHHHHHHHHHHHHHHhhcHHH
Q 004619          640 LKATCEEFIMAVTKLVVDPMLSFVAKVTAVKVALSSGNQNQNVDSLMAKPLKDQAFATPDKVAELVHKVNAAIQQELPPV  719 (741)
Q Consensus       640 Lk~~ce~fI~~~t~~i~~pl~~f~~k~~~~~~~~~~~~~~~~l~~~~~~~l~~q~fa~p~~i~~~~~~~~~~i~~~lp~~  719 (741)
                      ||.+|+.||+.++..+++|+.+|+.++.+...+...+.++-+........+.+++||.|..|..++.+++..+...++.+
T Consensus       620 Lr~a~~~fi~~asll~v~~l~~~i~~s~de~~~~~~~~p~~k~~~~~i~~~~q~~~a~~~~V~~lv~~v~~~~~~~~~~~  699 (733)
T KOG2604|consen  620 LRSACEKFIESASLLVVGDLLDFILKSIDELLKYSQATPEHKESLAAIYLLEQSAWAAPTKVTVLVEAVQELIKNKLYVI  699 (733)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHhHHHHH
Confidence            99999999999999999999999999998877654333322222233467899999999999999999999999999999


Q ss_pred             HHHHHhhcCChhhhhhccccCC
Q 004619          720 MAKMKLYLQNPSTRTILFKPVK  741 (741)
Q Consensus       720 ~~~m~lYL~~~~t~~iL~~pik  741 (741)
                      +..|.+|+.|.++.++.++||+
T Consensus       700 ~~~~~~~~sn~~~~f~~f~~~~  721 (733)
T KOG2604|consen  700 QASMELLLSNDDENFIYFQPVR  721 (733)
T ss_pred             HHHHHHHhhcCcccchhhhHHH
Confidence            9999999999999999999974

>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1 Back     alignment and domain information
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation Back     alignment and domain information
>KOG3758 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8 Back     alignment and domain information
>PF04129 Vps52: Vps52 / Sac2 family ; InterPro: IPR007258 Vps52 complexes with Vps53 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [] Back     alignment and domain information
>KOG2604 consensus Subunit of cis-Golgi transport vesicle tethering complex - Sec34p [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1961 consensus Vacuolar sorting protein VPS52/suppressor of actin Sac2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton] Back     alignment and domain information
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells Back     alignment and domain information
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query741
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 74.1 bits (181), Expect = 1e-13
 Identities = 100/660 (15%), Positives = 225/660 (34%), Gaps = 179/660 (27%)

Query: 113 YRHYVNTLMGRIQ-TCDDILR--QVDGTLDL-FNELQLQHHAVATKTKTLHDACDRLVIE 168
           + H+++   G  Q    DIL   +     +    ++Q    ++ +K +      D +++ 
Sbjct: 3   HHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEE-----IDHIIMS 57

Query: 169 KQRLIEFAEAVQSKLKYFDEL----ENIAASFYSPNMNVGNGNFFHLLKRL-DECI---- 219
           K         V   L+ F  L    E +   F    + +   N+  L+  +  E      
Sbjct: 58  KDA-------VSGTLRLFWTLLSKQEEMVQKFVEEVLRI---NYKFLMSPIKTEQRQPSM 107

Query: 220 ---LYVE-------GNPQYAESSVYLLK-FRQLQSRALGMIRSHVLSVLKSASSQVQAAI 268
              +Y+E        N  +A+ +V  L+ + +L+ +AL  +R     ++           
Sbjct: 108 MTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLR-QALLELRPAKNVLIDGV-------- 158

Query: 269 RSSGGS-KTS-VSEGVEASLIYVRFKAAASELKPVLEEIESRSSKKEYVQILEE-CHKL- 324
               GS KT    +   +  +  +       L      +++ +S +  +++L++  +++ 
Sbjct: 159 ---LGSGKTWVALDVCLSYKVQCKMDFKIFWLN-----LKNCNSPETVLEMLQKLLYQID 210

Query: 325 --YCEQ-----RLSLVKGIVQQRISEFSKKETLPSLTRSGCAYLM--QVCQLEHQLFDHF 375
             +  +      + L    +Q  +    K +   +        L+   V   +   ++ F
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN------CLLVLLNVQNAKA--WNAF 262

Query: 376 FPSS-----SEDISSLAPLIDPLSTFLYDILRPKLIHETNVDLLCELVDILKVEVLGEQL 430
             S      +        + D LS          L H +      E+  +L ++ L  + 
Sbjct: 263 NLSCKILLTTRFKQ----VTDFLSAATTT--HISLDHHSMTLTPDEVKSLL-LKYLDCRP 315

Query: 431 SRRSESLAGLRPTLERILADVHERLTFRARTHIRDEIA---NYIPSDEDLNYPSKLEQSA 487
                 +    P    I+A+            IRD +A   N+    + +N   KL    
Sbjct: 316 QDLPREVLTTNPRRLSIIAES-----------IRDGLATWDNW----KHVNC-DKLT--- 356

Query: 488 GTKLETTPADENPDVYKTWYPPL---EKTVSCLSKLYQCLEQAVFTGLAQEAVEVCSESI 544
            T +E++     P  Y+  +  L     +    + L   +    +  + +  V V    +
Sbjct: 357 -TIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI----WFDVIKSDVMVVVNKL 411

Query: 545 QKASKLIAKRSTPMDGQLFLIKYLLILREQIAPFDIEFSVTHKEL--------------- 589
            K S L+ K+  P +  + +    + L  +    + E+++ H+ +               
Sbjct: 412 HKYS-LVEKQ--PKESTISI--PSIYLELK-VKLENEYAL-HRSIVDHYNIPKTFDSDDL 464

Query: 590 -----D---FSHLLEHLRRILRGQ-ASLF-----D--------------WSRSTSLARTL 621
                D   +SH+  HL+ I   +  +LF     D              W+ S S+  TL
Sbjct: 465 IPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTL 524

Query: 622 SP-RVLESQI-DAKKELEKSLKATCEEFIMAV-TKLVVDPMLSFVAKVTAVKVALSSGNQ 678
              +  +  I D   + E+ + A   +F+  +   L+             +++AL + ++
Sbjct: 525 QQLKFYKPYICDNDPKYERLVNAI-LDFLPKIEENLICSKYTDL------LRIALMAEDE 577
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query741
d2b7ma1551 Exocyst complex component EXO70 {Baker's yeast (Sa 89.88
>d2b7ma1 a.118.17.2 (A:73-623) Exocyst complex component EXO70 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cullin repeat-like
family: Exocyst complex component
domain: Exocyst complex component EXO70
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.88  E-value=0.45  Score=22.29  Aligned_cols=164  Identities=18%  Similarity=0.198  Sum_probs=99.2

Q ss_pred             HCCCCCCCCCCCHHHHHHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q ss_conf             079987657840899899999998985619----7886708999999999999999999999999999899-99999983
Q 004619          196 FYSPNMNVGNGNFFHLLKRLDECILYVEGN----PQYAESSVYLLKFRQLQSRALGMIRSHVLSVLKSASS-QVQAAIRS  270 (741)
Q Consensus       196 L~sp~~~V~~~~F~~~L~~lD~cl~Fl~~h----p~fkda~~Y~~rfkqlltRAl~LIr~~~~~~L~~~~~-~v~~~l~~  270 (741)
                      ++.+...++-+.|...+.++++.++||+.|    +++++....+..++.++.+|+.-+..+|.+.|+.... +...-+..
T Consensus        16 i~~g~~~~~L~~Yl~al~rl~~al~~l~~~~~~~~~~~~~~gil~~l~~L~~~g~~~Le~~F~~lL~~~~p~~p~~~~~k   95 (551)
T d2b7ma1          16 LQKGINQVGLKQYTQVVHKLDDMLEDIQSGQANREENSEFHGILTHLEQLIKRSEAQLRVYFISILNSIKPFDPQINITK   95 (551)
T ss_dssp             HTSCGGGSTHHHHHHHHHHHHHHHHTTTSTTTSCTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCCCTHHHHHT
T ss_pred             HHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCC
T ss_conf             98096503699999999999999999984676737678777999999999999999999999998566898881566605


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---
Q ss_conf             38998877753146666999999898587999999951172588689999999999999554569899999978602---
Q 004619          271 SGGSKTSVSEGVEASLIYVRFKAAASELKPVLEEIESRSSKKEYVQILEECHKLYCEQRLSLVKGIVQQRISEFSKK---  347 (741)
Q Consensus       271 ~~~~~~~~s~~~~~aLlY~kF~~~a~~lk~Li~eie~R~~~~Ey~slL~dc~~~Yf~~R~~LL~p~i~~~l~e~~~~---  347 (741)
                                ...+..+.   ....+.++.+...+.....       ..+|.+.|...|...+...+.. +....+.   
T Consensus        96 ----------~~~~p~~~---~~~~~~L~~Ia~~l~~~~~-------~~~~~~iY~~~R~~~l~~sL~~-L~~~~~s~~~  154 (551)
T d2b7ma1          96 ----------KMPFPYYE---DQQLGALSWILDYFHGNSE-------GSIIQDILVGERSKLILKCMAF-LEPFAKEIST  154 (551)
T ss_dssp             ----------CCCCCCCC---HHHHHHHHHHHHHHHTTTC-------HHHHHHHHHHHHHHHHHHHHTT-TGGGGCC---
T ss_pred             ----------CCCCCCCC---HHHHHHHHHHHHHHHHCCC-------CCHHHHHHHHHHHHHHHHHHHH-HHHHHCCHHH
T ss_conf             ----------78999999---8999999999999986799-------7289999999999999999997-3235415535


Q ss_pred             ------CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             ------870466886889999999999972100068985
Q 004619          348 ------ETLPSLTRSGCAYLMQVCQLEHQLFDHFFPSSS  380 (741)
Q Consensus       348 ------~~l~~l~r~~~~~l~~~C~~E~~Lf~~FF~~~~  380 (741)
                            +....-+..-..-+..+.+.|+.|-.+.|+..+
T Consensus       155 ~~~~~y~~~~~~i~~~~~av~~l~~~E~~l~~~if~~~~  193 (551)
T d2b7ma1         155 AKNAPYEKGSSGMNSYTEALLGFIANEKSLVDDLYSQYT  193 (551)
T ss_dssp             ---------CCHHHHHHHHHHHHHHHHHHHHHHHCSSCT
T ss_pred             HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             413753566589999999999999999999999808860