Citrus Sinensis ID: 004648

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740
MASKKKLSFEESWALMEQGIAKLKKILKGLPEPPFASEECMTLYTIVYDLCSIELPSAQDCSYSQRLYVKYGEVFEEHMQSDVLPSFEDKRGEFMLREFVKQWENINVMGRWLLRFFEYLDRFYVRSQAGLASLIEVPVVVFRDRVYKDLKRDVRDTVIALIDEEREGEKIDRALVKKAVDIFVGIGILDMDFYRQDFEEQMIDDAGCYYLRKASSWILNDSCPEYMIKAEECLKKERDRAVYYFHTRSESKLIEKVQHELLVVHRNQLLENEKSGCRALISQEKFDDLSRIFRLYDETRTGLEPVAGIFKQYFIDQGKALVHQAEEDVRNKTANMEQNLVGKILELHDKFMAYVSICFGDHKLFLMALKEAFEVFCNESIVEISSAEILATFCDNLFKNSDAEKLSDETVERTMDKVIVLLGYFKYKDLFAEFYRKKLARRLLFDKGGNKDYDKTFLSKLKQHSGGHFTTKMEGMITDVVLARENQTALDDWFSSNLNEKPQFDLSVMVLTTGSWPSYKFFGLNLPSEMVKGVESFKKFYGTKTKARKLTWIYSLGNCHVNGKFELKAIELIVSTYQAACLMLFNDADRLSFSEILTQLNLNKGDLIRVLHSLSCSKHKILNKEPNTKTISQSDSFEFNAKFTDRMRRIRIPLPPVDDRREINEDVGKDRRHNIDAALVRIMKSRKVLGYQQLISECVEMLSHSFKPEIKAIKSRIDDLINREFIERDSKDPTMFNYSA
ccccccccHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHccHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEccccccccccccccccHHHHHHHHHHHHHHHccccccEEEEccccccEEEEEEEcccEEEEEEcHHHHHHHHHHcccccccHHHHHHHHcccHHHHHHHHHHHHHcccccccccccccccccccEEEEcccccccccEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccccccccccEEcc
ccccccccHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHcHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccHHHccHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEEEcccccccccccccccHHHHHHHHHHHHHHHHcccccEEEEEEccccEEEEEEcccccEEEEEEHHHHHHHHHHcccccccHHHHHHHccccHHHHHHHHHHHHHcHHHHHcccccccccccccEEEEcccccccEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccccccEEEcc
maskkklsFEESWALMEQGIAKLKKILkglpeppfaseecMTLYTIVYDLCsielpsaqdcsysqrLYVKYGEVFEEhmqsdvlpsfedkrGEFMLREFVKQWENINVMGRWLLRFFEYLDRFYVRSQAGlaslievpvvVFRDRVYKDLKRDVRDTVIALIDEEREGEKIDRALVKKAVDIFVGIGILDMDFYRQDFEEQMIDDAGCYYlrkasswilndscpEYMIKAEECLKKERDRAVYYFHTRSESKLIEKVQHELLVVHRNQLLENEKSGCRALISQEKFDDLSRIFRLYdetrtglepvaGIFKQYFIDQGKALVHQAEEDVRNKTANMEQNLVGKILELHDKFMAYVSICFGDHKLFLMALKEAFEVFCNESIVEISSAEILATFCDnlfknsdaeklsdetVERTMDKVIVLLGYFKYKDLFAEFYRKKLARRLLfdkggnkdydKTFLSKlkqhsgghfttkmEGMITDVVLARENQtalddwfssnlnekpqfDLSVMVLttgswpsykffglnlpsEMVKGVESFKKFygtktkarKLTWIYSlgnchvngkFELKAIELIVSTYQAACLMLFNDADRLSFSEILTQLNLNKGDLIRVLHSLScskhkilnkepntktisqsdsfefnaKFTDrmrririplppvddrreinedvgkdrRHNIDAALVRIMKSRKVLGYQQLISECVEMLSHSFKPEIKAIKSRIDDLINrefierdskdptmfnysa
maskkklsfeeSWALMEQGIAKLKKILKGLPEPPFASEECMTLYTIVYDLCSIELPSAQDCSYSQRLYVKYGEVFEEHMQSDVLPSFEDKRGEFMLREFVKQWENINVMGRWLLRFFEYLDRFYVRSQAglaslievpvvvfrdrvykdlkrdvrDTVIalideeregekidralvkKAVDIFVGIGILDMDFYRQDFEEQMIDDAGCYYLRKASSWILNDSCPEYMIKAEECLKKERDRAVYYFHTRSESKLIEKVQHELLVVHRNQLLENEKSGCRALisqekfddLSRIFRLYDETRTGLEPVAGIFKQYFIDQGKALVHQAEEDVRNKTANMEQNLVGKILELHDKFMAYVSICFGDHKLFLMALKEAFEVFCNESIVEISSAEILATFCDNLFKNsdaeklsdetvertMDKVIVLLGYFKYKDLFAEFYRKKLARRllfdkggnkdYDKTFLSKLkqhsgghfttkMEGMITDVVLARENQTALDDWFSSNLNEKPQFDLSVMVLTTGSWPSYKFFGLNLPSEMVKGVESFKKFYGTKTKARKLTWIYSLGNCHVNGKFELKAIELIVSTYQAACLMLFNDADRLSFSEILTQLNLNKGDLIRVLHSLSCSkhkilnkepntktisqsdsfefnakftdrmrririplppvddrreinedvgkdrrhnIDAALVRIMKSRKVLGYQQLISECVEMLSHSFKPEIKAIKSRIDDLINrefierdskdptmfnysa
MASKKKLSFEESWALMEQgiaklkkilkglPEPPFASEECMTLYTIVYDLCSIELPSAQDCSYSQRLYVKYGEVFEEHMQSDVLPSFEDKRGEFMLREFVKQWENINVMGRWLLRFFEYLDRFYVRSQAGLASLIEVPVVVFRDRVYKDLKRDVRDTVIALIDEEREGEKIDRALVKKAVDIFVGIGILDMDFYRQDFEEQMIDDAGCYYLRKASSWILNDSCPEYMIKAEECLKKERDRAVYYFHTRSESKLIEKVQHELLVVHRNQLLENEKSGCRALISQEKFDDLSRIFRLYDETRTGLEPVAGIFKQYFIDQGKALVHQAEEDVRNKTANMEQNLVGKILELHDKFMAYVSICFGDHKLFLMALKEAFEVFCNESIVEISSAEILATFCDNLFKNSDAEKLSDETVERTMDKVIVLLGYFKYKDLFAEFYRKKLARRLLFDKGGNKDYDKTFLSKLKQHSGGHFTTKMEGMITDVVLARENQTALDDWFSSNLNEKPQFDLSVMVLTTGSWPSYKFFGLNLPSEMVKGVESFKKFYGTKTKARKLTWIYSLGNCHVNGKFELKAIELIVSTYQAACLMLFNDADRLSFSEILTQLNLNKGDLIRVLHSLSCSKHKILNKEPNTKTISQSDSFEFNAKFTDRMRRIRIPLPPVDDRREINEDVGKDRRHNIDAALVRIMKSRKVLGYQQLISECVEMLSHSFKPEIKAIKSRIDDLINREFIERDSKDPTMFNYSA
************WALMEQGIAKLKKILKGLPEPPFASEECMTLYTIVYDLCSIELPSAQDCSYSQRLYVKYGEVFEEHMQSDVLPSFEDKRGEFMLREFVKQWENINVMGRWLLRFFEYLDRFYVRSQAGLASLIEVPVVVFRDRVYKDLKRDVRDTVIALIDEEREGEKIDRALVKKAVDIFVGIGILDMDFYRQDFEEQMIDDAGCYYLRKASSWILNDSCPEYMIKAEECLKKERDRAVYYFHTRSESKLIEKVQHELLVVHRNQLLENEKSGCRALISQEKFDDLSRIFRLYDETRTGLEPVAGIFKQYFIDQGKALVHQAEEDVRNKTANMEQNLVGKILELHDKFMAYVSICFGDHKLFLMALKEAFEVFCNESIVEISSAEILATFCDNLFKNSD******ETVERTMDKVIVLLGYFKYKDLFAEFYRKKLARRLLFDKGGNKDYDKTFLSKLKQHSGGHFTTKMEGMITDVVLARENQTALDDWFSSNLNEKPQFDLSVMVLTTGSWPSYKFFGLNLPSEMVKGVESFKKFYGTKTKARKLTWIYSLGNCHVNGKFELKAIELIVSTYQAACLMLFNDADRLSFSEILTQLNLNKGDLIRVLHSLSCSKHKIL***************************I**********************HNIDAALVRIMKSRKVLGYQQLISECVEMLSHSFKPEIKAIKSRIDDLINREFI**************
****KKL*FEESWALMEQGIAKLKKILKG*PE*PFASEECMTLYTIVYDLCSIELPSAQDCSYSQRLYVKYGEVFEEHMQSDVLPSFEDKRGEFMLREFVKQWENINVMGRWLLRFFEYLDRFYVRSQAGLASLIEVPVVVFRDRVYKDLKRDVRDTVIALIDEEREGEKIDRALVKKAVDIFVGIGILDMDFYRQDFEEQMIDDAGCYYLRKASSWILNDSCPEYMIKAEECLKKERDRAVYYFHTRSESKLIEKVQHELLVVHRNQLLENEKSGCRALISQEKFDDLSRIFRLYDETRTGLEPVAGIFKQYFIDQGKALVHQ*********ANMEQNLVGKILELHDKFMAYVSICFGDHKLFLMALKEAFEVFCNESIVEISSAEILATFCDNLFKNSDAEKLSDETVERTMDKVIVLLGYFKYKDLFAEFYRKKLARRLLFDK**NKDYDKTFLSKLKQHSGGHFTTKMEGMITDVVLARENQTALDDWFSSNLNEKPQFDLSVMVLTTGSWPSYKFFGLNLPSEMVKGVESFKKFYGTKTKARKLTWIYSLGNCHVNGKFELKAIELIVSTYQAACLMLFNDADRLSFSEILTQLNLNKGDLIRVLHSLSCSKHKILN*******ISQSDSFEFNAKFTDRMRRIRI*****************DRRHNIDAALVRIMKSRKVLGYQQLISECVEMLSHSFKPEIKAIKSRIDDLINREFIERDSKDPTMFNYSA
********FEESWALMEQGIAKLKKILKGLPEPPFASEECMTLYTIVYDLCSIELPSAQDCSYSQRLYVKYGEVFEEHMQSDVLPSFEDKRGEFMLREFVKQWENINVMGRWLLRFFEYLDRFYVRSQAGLASLIEVPVVVFRDRVYKDLKRDVRDTVIALIDEEREGEKIDRALVKKAVDIFVGIGILDMDFYRQDFEEQMIDDAGCYYLRKASSWILNDSCPEYMIKAEECLKKERDRAVYYFHTRSESKLIEKVQHELLVVHRNQLLENEKSGCRALISQEKFDDLSRIFRLYDETRTGLEPVAGIFKQYFIDQGKALVHQAEEDVRNKTANMEQNLVGKILELHDKFMAYVSICFGDHKLFLMALKEAFEVFCNESIVEISSAEILATFCDNLFKNSDAEKLSDETVERTMDKVIVLLGYFKYKDLFAEFYRKKLARRLLFDKGGNKDYDKTFLSKLKQHSGGHFTTKMEGMITDVVLARENQTALDDWFSSNLNEKPQFDLSVMVLTTGSWPSYKFFGLNLPSEMVKGVESFKKFYGTKTKARKLTWIYSLGNCHVNGKFELKAIELIVSTYQAACLMLFNDADRLSFSEILTQLNLNKGDLIRVLHSLSCSKHKILNKEPNTKTISQSDSFEFNAKFTDRMRRIRIPLPPVDDRREINEDVGKDRRHNIDAALVRIMKSRKVLGYQQLISECVEMLSHSFKPEIKAIKSRIDDLINREFIERDSKDPTMFNYSA
****KKLSFEESWALMEQGIAKLKKILKGLPEPPFASEECMTLYTIVYDLCSIELPSAQDCSYSQRLYVKYGEVFEEHMQSDVLPSFEDKRGEFMLREFVKQWENINVMGRWLLRFFEYLDRFYVRSQAGLASLIEVPVVVFRDRVYKDLKRDVRDTVIALIDEEREGEKIDRALVKKAVDIFVGIGILDMDFYRQDFEEQMIDDAGCYYLRKASSWILNDSCPEYMIKAEECLKKERDRAVYYFHTRSESKLIEKVQHELLVVHRNQLLENEKSGCRALISQEKFDDLSRIFRLYDETRTGLEPVAGIFKQYFIDQGKALVHQAEEDVRNKTANMEQNLVGKILELHDKFMAYVSICFGDHKLFLMALKEAFEVFCNESIVEISSAEILATFCDNLFKNSDAEKLSDETVERTMDKVIVLLGYFKYKDLFAEFYRKKLARRLLFDKGGNKDYDKTFLSKLKQHSGGHFTTKMEGMITDVVLARENQTALDDWFSSNLNEKPQFDLSVMVLTTGSWPSYKFFGLNLPSEMVKGVESFKKFYGTKTKARKLTWIYSLGNCHVNGKFELKAIELIVSTYQAACLMLFNDADRLSFSEILTQLNLNKGDLIRVLHSLSCSKHKILNKEPNTKTISQSDSFEFNAKFTDRMRRIRIPLPPVDDRREINEDVGKDRRHNIDAALVRIMKSRKVLGYQQLISECVEMLSHSFKPEIKAIKSRIDDLINREFIERDSKDPTMFNYSA
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MASKKKLSFEESWALMEQGIAKLKKILKGLPEPPFASEECMTLYTIVYDLCSIELPSAQDCSYSQRLYVKYGEVFEEHMQSDVLPSFEDKRGEFMLREFVKQWENINVMGRWLLRFFEYLDRFYVRSQAGLASLIEVPVVVFRDRVYKDLKRDVRDTVIALIDEEREGEKIDRALVKKAVDIFVGIGILDMDFYRQDFEEQMIDDAGCYYLRKASSWILNDSCPEYMIKAEECLKKERDRAVYYFHTRSESKLIEKVQHELLVVHRNQLLENEKSGCRALISQEKFDDLSRIFRLYDETRTGLEPVAGIFKQYFIDQGKALVHQAEEDVRNKTANMEQNLVGKILELHDKFMAYVSICFGDHKLFLMALKEAFEVFCNESIVEISSAEILATFCDNLFKNSDAEKLSDETVERTMDKVIVLLGYFKYKDLFAEFYRKKLARRLLFDKGGNKDYDKTFLSKLKQHSGGHFTTKMEGMITDVVLARENQTALDDWFSSNLNEKPQFDLSVMVLTTGSWPSYKFFGLNLPSEMVKGVESFKKFYGTKTKARKLTWIYSLGNCHVNGKFELKAIELIVSTYQAACLMLFNDADRLSFSEILTQLNLNKGDLIRVLHSLSCSKHKILNKEPNTKTISQSDSFEFNAKFTDRMRRIRIPLPPVDDRREINEDVGKDRRHNIDAALVRIMKSRKVLGYQQLISECVEMLSHSFKPEIKAIKSRIDDLINREFIERDSKDPTMFNYSA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query740 2.2.26 [Sep-21-2011]
Q94AH6738 Cullin-1 OS=Arabidopsis t yes no 0.989 0.991 0.609 0.0
Q9SRZ0742 Cullin-2 OS=Arabidopsis t no no 0.990 0.987 0.540 0.0
P0CH31721 Putative cullin-like prot no no 0.958 0.983 0.540 0.0
Q54NZ5769 Cullin-3 OS=Dictyostelium yes no 0.891 0.858 0.307 1e-97
Q13619759 Cullin-4A OS=Homo sapiens yes no 0.9 0.877 0.315 2e-97
A2A432970 Cullin-4B OS=Mus musculus yes no 0.901 0.687 0.316 9e-93
Q3TCH7759 Cullin-4A OS=Mus musculus no no 0.901 0.878 0.313 1e-92
Q13620913 Cullin-4B OS=Homo sapiens no no 0.901 0.730 0.316 2e-92
Q9ZVH4732 Cullin-3A OS=Arabidopsis no no 0.887 0.897 0.320 2e-92
Q9C9L0732 Cullin-3B OS=Arabidopsis no no 0.887 0.897 0.318 6e-91
>sp|Q94AH6|CUL1_ARATH Cullin-1 OS=Arabidopsis thaliana GN=CUL1 PE=1 SV=1 Back     alignment and function desciption
 Score =  943 bits (2438), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 452/741 (60%), Positives = 569/741 (76%), Gaps = 9/741 (1%)

Query: 4   KKKLSFEESWALMEQGIAKLKKILKGLPEPPFASEECMTLYTIVYDLCSIELPSAQDCSY 63
           +K +  E+ W  M+ GI KLK+IL+GL EP F SE+ M LYT +Y++C+ + P      Y
Sbjct: 3   RKTIDLEQGWDYMQTGITKLKRILEGLNEPAFDSEQYMMLYTTIYNMCTQKPPH----DY 58

Query: 64  SQRLYVKYGEVFEEHMQSDVLPSFEDKRGEFMLREFVKQWENINVMGRWLLRFFEYLDRF 123
           SQ+LY KY E FEE++ S VLP+  +K  EFMLRE  K+W N  VM RWL RFF YLDR+
Sbjct: 59  SQQLYDKYREAFEEYINSTVLPALREKHDEFMLRELFKRWSNHKVMVRWLSRFFYYLDRY 118

Query: 124 YVRSQAGLASLIEVPVVVFRDRVYKDLKRDVRDTVIALIDEEREGEKIDRALVKKAVDIF 183
           ++ ++  L  L EV +  FRD VY +L   V+  VIAL+D+EREGE+IDRAL+K  +DI+
Sbjct: 119 FI-ARRSLPPLNEVGLTCFRDLVYNELHSKVKQAVIALVDKEREGEQIDRALLKNVLDIY 177

Query: 184 VGIGILDMDFYRQDFEEQMIDDAGCYYLRKASSWILNDSCPEYMIKAEECLKKERDRAVY 243
           V IG+  M+ Y +DFE  M+ D   YY RKASSWI  DSCP+YM+K+EECLKKER+R  +
Sbjct: 178 VEIGMGQMERYEEDFESFMLQDTSSYYSRKASSWIQEDSCPDYMLKSEECLKKERERVAH 237

Query: 244 YFHTRSESKLIEKVQHELLVVHRNQLLENEKSGCRALISQEKFDDLSRIFRLYDETRTGL 303
           Y H+ SE KL+EKVQHELLVV  +QLLE E SGCRAL+  +K DDLSR++RLY +   GL
Sbjct: 238 YLHSSSEPKLVEKVQHELLVVFASQLLEKEHSGCRALLRDDKVDDLSRMYRLYHKILRGL 297

Query: 304 EPVAGIFKQYFIDQGKALVHQAEEDVRNKTAN----MEQNLVGKILELHDKFMAYVSICF 359
           EPVA IFKQ+   +G ALV QAE+   N+ AN     EQ L+ K++ELHDK+M YV+ CF
Sbjct: 298 EPVANIFKQHVTAEGNALVQQAEDTATNQVANTASVQEQVLIRKVIELHDKYMVYVTECF 357

Query: 360 GDHKLFLMALKEAFEVFCNESIVEISSAEILATFCDNLFKNSDAEKLSDETVERTMDKVI 419
            +H LF  ALKEAFE+FCN+++   SSAE+LATFCDN+ K   +EKLSDE +E T++KV+
Sbjct: 358 QNHTLFHKALKEAFEIFCNKTVAGSSSAELLATFCDNILKKGGSEKLSDEAIEDTLEKVV 417

Query: 420 VLLGYFKYKDLFAEFYRKKLARRLLFDKGGNKDYDKTFLSKLKQHSGGHFTTKMEGMITD 479
            LL Y   KDLFAEFYRKKLARRLLFD+  N D++++ L+KLKQ  GG FT+KMEGM+TD
Sbjct: 418 KLLAYISDKDLFAEFYRKKLARRLLFDRSANDDHERSILTKLKQQCGGQFTSKMEGMVTD 477

Query: 480 VVLARENQTALDDWFSSNLNEKPQFDLSVMVLTTGSWPSYKFFGLNLPSEMVKGVESFKK 539
           + LARENQ + +D+  SN    P  DL+V VLTTG WPSYK F +NLPSEM+K VE FK 
Sbjct: 478 LTLARENQNSFEDYLGSNPAANPGIDLTVTVLTTGFWPSYKSFDINLPSEMIKCVEVFKG 537

Query: 540 FYGTKTKARKLTWIYSLGNCHVNGKFELKAIELIVSTYQAACLMLFNDADRLSFSEILTQ 599
           FY TKTK RKLTWIYSLG CH+NGKF+ KAIELIVSTYQAA L+LFN  D+LS++EIL Q
Sbjct: 538 FYETKTKHRKLTWIYSLGTCHINGKFDQKAIELIVSTYQAAVLLLFNTTDKLSYTEILAQ 597

Query: 600 LNLNKGDLIRVLHSLSCSKHKILNKEPNTKTISQSDSFEFNAKFTDRMRRIRIPLPPVDD 659
           LNL+  DL+R+LHSLSC+K+KIL KEPNTKT+SQ+D+FEFN+KFTDRMRRI+IPLPPVD+
Sbjct: 598 LNLSHEDLVRLLHSLSCAKYKILLKEPNTKTVSQNDAFEFNSKFTDRMRRIKIPLPPVDE 657

Query: 660 RREINEDVGKDRRHNIDAALVRIMKSRKVLGYQQLISECVEMLSHSFKPEIKAIKSRIDD 719
           R+++ EDV KDRR+ IDAA+VRIMKSRKVLG+QQL+SECVE LS  FKP+IKAIK R++D
Sbjct: 658 RKKVVEDVDKDRRYAIDAAIVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMED 717

Query: 720 LINREFIERDSKDPTMFNYSA 740
           LI R+++ERD ++P MF Y A
Sbjct: 718 LITRDYLERDKENPNMFRYLA 738
Involved in ubiquitination and subsequent proteasomal degradation of target proteins. Regulator of mitotic processes which plays a role during gametogenesis and embryogenesis. Together with SKP1, RBX1 and a F-box protein, it forms a SCF complex. The functional specificity of this complex depends of the type of F-box protein. SCF(UFO) is implicated in floral organ development. SCF(TIR1) is involved in auxin signaling pathway. SCF(COI1) regulates responses to jasmonates. SCF(EID1) and SCF(AFR) are implicated in phytochrome A light signaling. SCF(ADO1/ZTL), SCF(ADO2/LKP2), SCF(ADO3/FKF1) are related to the circadian clock. SCF(ORE9) seems to be involved in senescence. SCF(EBF1/EBF2) may regulate ethylene signaling.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9SRZ0|CUL2_ARATH Cullin-2 OS=Arabidopsis thaliana GN=CUL2 PE=1 SV=1 Back     alignment and function description
>sp|P0CH31|CLL1_ARATH Putative cullin-like protein 1 OS=Arabidopsis thaliana GN=At1g43140 PE=3 SV=1 Back     alignment and function description
>sp|Q54NZ5|CUL3_DICDI Cullin-3 OS=Dictyostelium discoideum GN=culC PE=3 SV=1 Back     alignment and function description
>sp|Q13619|CUL4A_HUMAN Cullin-4A OS=Homo sapiens GN=CUL4A PE=1 SV=3 Back     alignment and function description
>sp|A2A432|CUL4B_MOUSE Cullin-4B OS=Mus musculus GN=Cul4b PE=1 SV=1 Back     alignment and function description
>sp|Q3TCH7|CUL4A_MOUSE Cullin-4A OS=Mus musculus GN=Cul4a PE=1 SV=1 Back     alignment and function description
>sp|Q13620|CUL4B_HUMAN Cullin-4B OS=Homo sapiens GN=CUL4B PE=1 SV=4 Back     alignment and function description
>sp|Q9ZVH4|CUL3A_ARATH Cullin-3A OS=Arabidopsis thaliana GN=CUL3A PE=1 SV=1 Back     alignment and function description
>sp|Q9C9L0|CUL3B_ARATH Cullin-3B OS=Arabidopsis thaliana GN=CUL3B PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query740
18411983738 cullin 1 [Arabidopsis thaliana] gi|79324 0.989 0.991 0.609 0.0
297814051738 ATCUL1 [Arabidopsis lyrata subsp. lyrata 0.989 0.991 0.604 0.0
386688468738 cullin 1-like protein A [Prunus avium] 0.989 0.991 0.612 0.0
225432272744 PREDICTED: cullin-1 isoform 1 [Vitis vin 0.993 0.987 0.601 0.0
356521881739 PREDICTED: cullin-1-like isoform 2 [Glyc 0.993 0.994 0.602 0.0
449450670744 PREDICTED: cullin-1-like [Cucumis sativu 0.993 0.987 0.599 0.0
356563944744 PREDICTED: cullin-1-like isoform 1 [Glyc 0.993 0.987 0.597 0.0
356521879744 PREDICTED: cullin-1-like isoform 1 [Glyc 0.993 0.987 0.598 0.0
224123204744 predicted protein [Populus trichocarpa] 0.989 0.983 0.599 0.0
255551707744 Cullin-1, putative [Ricinus communis] gi 0.993 0.987 0.599 0.0
>gi|18411983|ref|NP_567243.1| cullin 1 [Arabidopsis thaliana] gi|79324981|ref|NP_001031575.1| cullin 1 [Arabidopsis thaliana] gi|79324983|ref|NP_001031576.1| cullin 1 [Arabidopsis thaliana] gi|334186321|ref|NP_001190661.1| cullin 1 [Arabidopsis thaliana] gi|68052236|sp|Q94AH6.1|CUL1_ARATH RecName: Full=Cullin-1 gi|15028161|gb|AAK76704.1| putative cullin 1 protein [Arabidopsis thaliana] gi|22136936|gb|AAM91812.1| putative cullin 1 protein [Arabidopsis thaliana] gi|30524960|emb|CAC85264.1| cullin 1 [Arabidopsis thaliana] gi|222423687|dbj|BAH19810.1| AT4G02570 [Arabidopsis thaliana] gi|332656794|gb|AEE82194.1| cullin 1 [Arabidopsis thaliana] gi|332656795|gb|AEE82195.1| cullin 1 [Arabidopsis thaliana] gi|332656796|gb|AEE82196.1| cullin 1 [Arabidopsis thaliana] gi|332656797|gb|AEE82197.1| cullin 1 [Arabidopsis thaliana] Back     alignment and taxonomy information
 Score =  943 bits (2438), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 452/741 (60%), Positives = 569/741 (76%), Gaps = 9/741 (1%)

Query: 4   KKKLSFEESWALMEQGIAKLKKILKGLPEPPFASEECMTLYTIVYDLCSIELPSAQDCSY 63
           +K +  E+ W  M+ GI KLK+IL+GL EP F SE+ M LYT +Y++C+ + P      Y
Sbjct: 3   RKTIDLEQGWDYMQTGITKLKRILEGLNEPAFDSEQYMMLYTTIYNMCTQKPPH----DY 58

Query: 64  SQRLYVKYGEVFEEHMQSDVLPSFEDKRGEFMLREFVKQWENINVMGRWLLRFFEYLDRF 123
           SQ+LY KY E FEE++ S VLP+  +K  EFMLRE  K+W N  VM RWL RFF YLDR+
Sbjct: 59  SQQLYDKYREAFEEYINSTVLPALREKHDEFMLRELFKRWSNHKVMVRWLSRFFYYLDRY 118

Query: 124 YVRSQAGLASLIEVPVVVFRDRVYKDLKRDVRDTVIALIDEEREGEKIDRALVKKAVDIF 183
           ++ ++  L  L EV +  FRD VY +L   V+  VIAL+D+EREGE+IDRAL+K  +DI+
Sbjct: 119 FI-ARRSLPPLNEVGLTCFRDLVYNELHSKVKQAVIALVDKEREGEQIDRALLKNVLDIY 177

Query: 184 VGIGILDMDFYRQDFEEQMIDDAGCYYLRKASSWILNDSCPEYMIKAEECLKKERDRAVY 243
           V IG+  M+ Y +DFE  M+ D   YY RKASSWI  DSCP+YM+K+EECLKKER+R  +
Sbjct: 178 VEIGMGQMERYEEDFESFMLQDTSSYYSRKASSWIQEDSCPDYMLKSEECLKKERERVAH 237

Query: 244 YFHTRSESKLIEKVQHELLVVHRNQLLENEKSGCRALISQEKFDDLSRIFRLYDETRTGL 303
           Y H+ SE KL+EKVQHELLVV  +QLLE E SGCRAL+  +K DDLSR++RLY +   GL
Sbjct: 238 YLHSSSEPKLVEKVQHELLVVFASQLLEKEHSGCRALLRDDKVDDLSRMYRLYHKILRGL 297

Query: 304 EPVAGIFKQYFIDQGKALVHQAEEDVRNKTAN----MEQNLVGKILELHDKFMAYVSICF 359
           EPVA IFKQ+   +G ALV QAE+   N+ AN     EQ L+ K++ELHDK+M YV+ CF
Sbjct: 298 EPVANIFKQHVTAEGNALVQQAEDTATNQVANTASVQEQVLIRKVIELHDKYMVYVTECF 357

Query: 360 GDHKLFLMALKEAFEVFCNESIVEISSAEILATFCDNLFKNSDAEKLSDETVERTMDKVI 419
            +H LF  ALKEAFE+FCN+++   SSAE+LATFCDN+ K   +EKLSDE +E T++KV+
Sbjct: 358 QNHTLFHKALKEAFEIFCNKTVAGSSSAELLATFCDNILKKGGSEKLSDEAIEDTLEKVV 417

Query: 420 VLLGYFKYKDLFAEFYRKKLARRLLFDKGGNKDYDKTFLSKLKQHSGGHFTTKMEGMITD 479
            LL Y   KDLFAEFYRKKLARRLLFD+  N D++++ L+KLKQ  GG FT+KMEGM+TD
Sbjct: 418 KLLAYISDKDLFAEFYRKKLARRLLFDRSANDDHERSILTKLKQQCGGQFTSKMEGMVTD 477

Query: 480 VVLARENQTALDDWFSSNLNEKPQFDLSVMVLTTGSWPSYKFFGLNLPSEMVKGVESFKK 539
           + LARENQ + +D+  SN    P  DL+V VLTTG WPSYK F +NLPSEM+K VE FK 
Sbjct: 478 LTLARENQNSFEDYLGSNPAANPGIDLTVTVLTTGFWPSYKSFDINLPSEMIKCVEVFKG 537

Query: 540 FYGTKTKARKLTWIYSLGNCHVNGKFELKAIELIVSTYQAACLMLFNDADRLSFSEILTQ 599
           FY TKTK RKLTWIYSLG CH+NGKF+ KAIELIVSTYQAA L+LFN  D+LS++EIL Q
Sbjct: 538 FYETKTKHRKLTWIYSLGTCHINGKFDQKAIELIVSTYQAAVLLLFNTTDKLSYTEILAQ 597

Query: 600 LNLNKGDLIRVLHSLSCSKHKILNKEPNTKTISQSDSFEFNAKFTDRMRRIRIPLPPVDD 659
           LNL+  DL+R+LHSLSC+K+KIL KEPNTKT+SQ+D+FEFN+KFTDRMRRI+IPLPPVD+
Sbjct: 598 LNLSHEDLVRLLHSLSCAKYKILLKEPNTKTVSQNDAFEFNSKFTDRMRRIKIPLPPVDE 657

Query: 660 RREINEDVGKDRRHNIDAALVRIMKSRKVLGYQQLISECVEMLSHSFKPEIKAIKSRIDD 719
           R+++ EDV KDRR+ IDAA+VRIMKSRKVLG+QQL+SECVE LS  FKP+IKAIK R++D
Sbjct: 658 RKKVVEDVDKDRRYAIDAAIVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMED 717

Query: 720 LINREFIERDSKDPTMFNYSA 740
           LI R+++ERD ++P MF Y A
Sbjct: 718 LITRDYLERDKENPNMFRYLA 738

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297814051|ref|XP_002874909.1| ATCUL1 [Arabidopsis lyrata subsp. lyrata] gi|297320746|gb|EFH51168.1| ATCUL1 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|386688468|gb|AFJ21664.1| cullin 1-like protein A [Prunus avium] Back     alignment and taxonomy information
>gi|225432272|ref|XP_002272195.1| PREDICTED: cullin-1 isoform 1 [Vitis vinifera] gi|297736859|emb|CBI26060.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356521881|ref|XP_003529579.1| PREDICTED: cullin-1-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|449450670|ref|XP_004143085.1| PREDICTED: cullin-1-like [Cucumis sativus] gi|449517495|ref|XP_004165781.1| PREDICTED: cullin-1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356563944|ref|XP_003550217.1| PREDICTED: cullin-1-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|356521879|ref|XP_003529578.1| PREDICTED: cullin-1-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|224123204|ref|XP_002330364.1| predicted protein [Populus trichocarpa] gi|222871568|gb|EEF08699.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255551707|ref|XP_002516899.1| Cullin-1, putative [Ricinus communis] gi|223543987|gb|EEF45513.1| Cullin-1, putative [Ricinus communis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query740
TAIR|locus:2132377738 CUL1 "cullin 1" [Arabidopsis t 0.989 0.991 0.597 2.8e-240
TAIR|locus:2024755742 CUL2 "cullin 2" [Arabidopsis t 0.990 0.987 0.530 3.5e-210
TAIR|locus:2018645721 AT1G43140 [Arabidopsis thalian 0.640 0.657 0.479 5e-115
DICTYBASE|DDB_G0284903769 culC "cullin C" [Dictyostelium 0.741 0.713 0.313 8.6e-100
TAIR|locus:2200670732 CUL3 "AT1G26830" [Arabidopsis 0.887 0.897 0.323 1e-91
TAIR|locus:2205020732 CUL3B "AT1G69670" [Arabidopsis 0.889 0.898 0.323 4e-90
FB|FBgn0261268934 Cul-3 "Cullin-3" [Drosophila m 0.674 0.534 0.276 2.2e-85
FB|FBgn0033260821 Cul-4 "Cullin-4" [Drosophila m 0.724 0.652 0.337 4.4e-84
UNIPROTKB|E1BQK9884 CUL4B "Uncharacterized protein 0.721 0.604 0.331 1.2e-81
ZFIN|ZDB-GENE-040426-2887775 cul1b "cullin 1b" [Danio rerio 0.883 0.843 0.295 2.5e-81
TAIR|locus:2132377 CUL1 "cullin 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2316 (820.3 bits), Expect = 2.8e-240, P = 2.8e-240
 Identities = 443/741 (59%), Positives = 558/741 (75%)

Query:     4 KKKLSFEESWALMEQXXXXXXXXXXXXPEPPFASEECMTLYTIVYDLCSIELPSAQDCSY 63
             +K +  E+ W  M+              EP F SE+ M LYT +Y++C+ + P      Y
Sbjct:     3 RKTIDLEQGWDYMQTGITKLKRILEGLNEPAFDSEQYMMLYTTIYNMCTQKPPH----DY 58

Query:    64 SQRLYVKYGEVFEEHMQSDVLPSFEDKRGEFMLREFVKQWENINVMGRWLLRFFEYLDRF 123
             SQ+LY KY E FEE++ S VLP+  +K  EFMLRE  K+W N  VM RWL RFF YLDR+
Sbjct:    59 SQQLYDKYREAFEEYINSTVLPALREKHDEFMLRELFKRWSNHKVMVRWLSRFFYYLDRY 118

Query:   124 YVRSQAGLASLIEVPVVVFRDRVYKDLKRDVRDTVIALIDEEREGEKIDRALVKKAVDIF 183
             ++ ++  L  L EV +  FRD VY +L   V+  VIAL+D+EREGE+IDRAL+K  +DI+
Sbjct:   119 FI-ARRSLPPLNEVGLTCFRDLVYNELHSKVKQAVIALVDKEREGEQIDRALLKNVLDIY 177

Query:   184 VGIGILDMDFYRQDFEEQMIDDAGCYYLRKASSWILNDSCPEYMIKAEECLKKERDRAVY 243
             V IG+  M+ Y +DFE  M+ D   YY RKASSWI  DSCP+YM+K+EECLKKER+R  +
Sbjct:   178 VEIGMGQMERYEEDFESFMLQDTSSYYSRKASSWIQEDSCPDYMLKSEECLKKERERVAH 237

Query:   244 YFHTRSESKLIEKVQHELLVVHRNQLLENEKSGCRALISQEKFDDLSRIFRLYDETRTGL 303
             Y H+ SE KL+EKVQHELLVV  +QLLE E SGCRAL+  +K DDLSR++RLY +   GL
Sbjct:   238 YLHSSSEPKLVEKVQHELLVVFASQLLEKEHSGCRALLRDDKVDDLSRMYRLYHKILRGL 297

Query:   304 EPVAGIFKQYFIDQGKALVHQAEEDVRNKTAN----MEQNLVGKILELHDKFMAYVSICF 359
             EPVA IFKQ+   +G ALV QAE+   N+ AN     EQ L+ K++ELHDK+M YV+ CF
Sbjct:   298 EPVANIFKQHVTAEGNALVQQAEDTATNQVANTASVQEQVLIRKVIELHDKYMVYVTECF 357

Query:   360 GDHKLFLMALKEAFEVFCNESIVEISSAEILATFCDNLFKNSDAEKLSDETVERTMDKVI 419
              +H LF  ALKEAFE+FCN+++   SSAE+LATFCDN+ K   +EKLSDE +E T++KV+
Sbjct:   358 QNHTLFHKALKEAFEIFCNKTVAGSSSAELLATFCDNILKKGGSEKLSDEAIEDTLEKVV 417

Query:   420 VLLGYFKYKDLFAEFYRKKLARRLLFDKGGNKDYDKTFLSKLKQHSGGHFTTKMEGMITD 479
              LL Y   KDLFAEFYRKKLARRLLFD+  N D++++ L+KLKQ  GG FT+KMEGM+TD
Sbjct:   418 KLLAYISDKDLFAEFYRKKLARRLLFDRSANDDHERSILTKLKQQCGGQFTSKMEGMVTD 477

Query:   480 VVLARENQTALDDWFSSNLNEKPQFDLSVMVLTTGSWPSYKFFGLNLPSEMVKGVESFKK 539
             + LARENQ + +D+  SN    P  DL+V VLTTG WPSYK F +NLPSEM+K VE FK 
Sbjct:   478 LTLARENQNSFEDYLGSNPAANPGIDLTVTVLTTGFWPSYKSFDINLPSEMIKCVEVFKG 537

Query:   540 FYGTKTKARKLTWIYSLGNCHVNGKFELKAIELIVSTYQAACLMLFNDADRLSFSEILTQ 599
             FY TKTK RKLTWIYSLG CH+NGKF+ KAIELIVSTYQAA L+LFN  D+LS++EIL Q
Sbjct:   538 FYETKTKHRKLTWIYSLGTCHINGKFDQKAIELIVSTYQAAVLLLFNTTDKLSYTEILAQ 597

Query:   600 LNLNKGDLIRVLHSLSCSKHKILNKEPNTKTISQSDSFEFNAKFTDRMRRIRIPLPPVDD 659
             LNL+  DL+R+LHSLSC+K+KIL KEPNTKT+SQ+D+FEFN+KFTDRMRRI+IPLPPVD+
Sbjct:   598 LNLSHEDLVRLLHSLSCAKYKILLKEPNTKTVSQNDAFEFNSKFTDRMRRIKIPLPPVDE 657

Query:   660 RREINEDVGKDRRHNIDAALVRIMKSRKVLGYQQLISECVEMLSHSFKPEIKAIKSRIDD 719
             R+++ EDV KDRR+ IDAA+VRIMKSRKVLG+QQL+SECVE LS  FKP+IKAIK R++D
Sbjct:   658 RKKVVEDVDKDRRYAIDAAIVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMED 717

Query:   720 LINREFIERDSKDPTMFNYSA 740
             LI R+++ERD ++P MF Y A
Sbjct:   718 LITRDYLERDKENPNMFRYLA 738
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0031625 "ubiquitin protein ligase binding" evidence=IEA
GO:0000151 "ubiquitin ligase complex" evidence=IPI
GO:0009733 "response to auxin stimulus" evidence=IMP
GO:0009793 "embryo development ending in seed dormancy" evidence=IMP
GO:0005819 "spindle" evidence=IDA
GO:0009524 "phragmoplast" evidence=IDA
GO:0005515 "protein binding" evidence=IPI
GO:0000794 "condensed nuclear chromosome" evidence=IDA
GO:0005737 "cytoplasm" evidence=IDA
GO:0009753 "response to jasmonic acid stimulus" evidence=IMP
GO:0009867 "jasmonic acid mediated signaling pathway" evidence=TAS
GO:0010265 "SCF complex assembly" evidence=IPI
GO:0042752 "regulation of circadian rhythm" evidence=RCA;IMP
GO:0005829 "cytosol" evidence=IDA
GO:0000278 "mitotic cell cycle" evidence=RCA
GO:0006396 "RNA processing" evidence=RCA
GO:0006486 "protein glycosylation" evidence=RCA
GO:0006499 "N-terminal protein myristoylation" evidence=RCA
GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA
GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA
GO:0007062 "sister chromatid cohesion" evidence=RCA
GO:0009790 "embryo development" evidence=RCA
GO:0009880 "embryonic pattern specification" evidence=RCA
GO:0010072 "primary shoot apical meristem specification" evidence=RCA
GO:0010162 "seed dormancy process" evidence=RCA
GO:0010431 "seed maturation" evidence=RCA
GO:0010564 "regulation of cell cycle process" evidence=RCA
GO:0043090 "amino acid import" evidence=RCA
GO:0045595 "regulation of cell differentiation" evidence=RCA
GO:0048316 "seed development" evidence=RCA
GO:0048366 "leaf development" evidence=IMP;RCA
GO:0048825 "cotyledon development" evidence=RCA
GO:0051301 "cell division" evidence=RCA
GO:0010087 "phloem or xylem histogenesis" evidence=IMP
TAIR|locus:2024755 CUL2 "cullin 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2018645 AT1G43140 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0284903 culC "cullin C" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
TAIR|locus:2200670 CUL3 "AT1G26830" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2205020 CUL3B "AT1G69670" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
FB|FBgn0261268 Cul-3 "Cullin-3" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0033260 Cul-4 "Cullin-4" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|E1BQK9 CUL4B "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-2887 cul1b "cullin 1b" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q13619CUL4A_HUMANNo assigned EC number0.31580.90.8774yesno
Q94AH6CUL1_ARATHNo assigned EC number0.60990.98910.9918yesno
Q54NZ5CUL3_DICDINo assigned EC number0.30760.89180.8582yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query740
pfam00888603 pfam00888, Cullin, Cullin family 1e-154
COG5647773 COG5647, COG5647, Cullin, a subunit of E3 ubiquiti 4e-90
smart00182143 smart00182, CULLIN, Cullin 1e-38
pfam1055768 pfam10557, Cullin_Nedd8, Cullin protein neddylatio 4e-24
smart0088468 smart00884, Cullin_Nedd8, Cullin protein neddylati 3e-22
>gnl|CDD|216175 pfam00888, Cullin, Cullin family Back     alignment and domain information 
 Score =  460 bits (1186), Expect = e-154
 Identities = 217/633 (34%), Positives = 349/633 (55%), Gaps = 31/633 (4%)

Query: 13  WALMEQGIAKLKKILKGLPEPPFASEECMTLYTIVYDLCSIELPSAQDCSYSQRLYVKYG 72
           W  +   I ++           F+S + M LYT VY+               ++LY +  
Sbjct: 1   WEKLLDAIDQILL-------KSFSSLDYMELYTAVYNYV--------PHKLGEKLYNRLK 45

Query: 73  EVFEEHMQSDVLPSFEDKRGEFMLREFVKQWENINVMGRWLLRFFEYLDRFYVRSQAGLA 132
           E  EE++ + +L S  +   E +L+ + K+W   +   + L   F YL+R+YV+ +  L 
Sbjct: 46  EYLEEYVAA-LLKSILENDDEVLLKTYYKEWNKFSTSMKILNNIFMYLNRYYVK-RKNLD 103

Query: 133 SLIEVPVVVFRDRVYKDLKRDVRDTVIALIDEEREGEKIDRALVKKAVDIFVGIGILDMD 192
            + E+ + ++R+ ++  +K  + D ++ LI++ER GE IDR+L+K  +D+FV +G+  ++
Sbjct: 104 GVYELGLDIWRESLFDPIKDKLIDALLRLIEKERLGEIIDRSLIKNVLDMFVELGLDKLE 163

Query: 193 FYRQDFEEQMIDDAGCYYLRKASSWILNDSCPEYMIKAEECLKKERDRAVYYFHTRSESK 252
            Y++DFE+  ++    +Y +++S ++  +S  EYM K EE L++E +R   Y H+ +E K
Sbjct: 164 VYKEDFEKPFLEATSEFYKKESSKFLQENSVSEYMKKVEERLEEEEERVRLYLHSSTEKK 223

Query: 253 LIEKVQHELLVVHRNQLLENEKSGCRALISQEKFDDLSRIFRLYDETRTGLEPVAGIFKQ 312
           LIE  +  L+  H   L     S  + L+  EK +DL R++RL      GLEP+   F++
Sbjct: 224 LIEVCEKVLIEKHLEFLH----SEFQRLLDNEKIEDLRRMYRLLSRVPNGLEPLRKYFEK 279

Query: 313 YFIDQGKALVHQAEEDVRNKTANMEQNLVGKILELHDKFMAYVSICFGDHKLFLMALKEA 372
           +   +G A V               ++ V  +LELHDK+ + V+  F +  LFL AL +A
Sbjct: 280 HIKKEGLAAVS------DLAVETDPKDYVQTLLELHDKYDSLVNEAFNNDALFLNALDKA 333

Query: 373 FEVFCNESIVEISSAEILATFCDNLFKNSDAEKLSDETVERTMDKVIVLLGYFKYKDLFA 432
           FE F N +     SAE+LA +CD+L K S  + L++E +E  +DK+IVL  Y + KD+F 
Sbjct: 334 FEEFINSN--SSKSAELLAKYCDSLLKKS-LKGLNEEELEEKLDKIIVLFKYIEDKDVFE 390

Query: 433 EFYRKKLARRLLFDKGGNKDYDKTFLSKLKQHSGGHFTTKMEGMITDVVLARENQTALDD 492
           +FYRK LA+RLL     + D +K  + KLKQ  G  FT+K+E M  D+ L++E   +  +
Sbjct: 391 KFYRKMLAKRLLNGTSASDDAEKKMIEKLKQECGYQFTSKLERMFKDISLSKELNNSFKN 450

Query: 493 WFSSNLNEKPQ-FDLSVMVLTTGSWPSYKFFGLNLPSEMVKGVESFKKFYGTKTKARKLT 551
              +NL+   +  DLSV+VL+TG WP+      +LP E+ K +E F++FY  K   RKLT
Sbjct: 451 HLENNLDLLSEGIDLSVLVLSTGFWPTLPTEPFSLPEELEKALEKFEEFYSKKHSGRKLT 510

Query: 552 WIYSLGNCHVNGKFELKAIELIVSTYQAACLMLFNDADRLSFSEILTQLNLNKGDLIRVL 611
           W++SLG   +  +F  K  EL VSTYQ A L+LFND + L+  E+     L+   L R L
Sbjct: 511 WLHSLGRGELKAEFNDKTYELTVSTYQMAVLLLFNDQEELTVEELSEATGLSDDLLRRTL 570

Query: 612 HSLSCSKHKILNKEPNTKTISQSDSFEFNAKFT 644
            SL  +K  +L K P  +  S +  F  N+ FT
Sbjct: 571 QSLLKAKVLLLTKIPKGEEFSPNTVFSLNSDFT 603

Length = 603
>gnl|CDD|227934 COG5647, COG5647, Cullin, a subunit of E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|214545 smart00182, CULLIN, Cullin Back     alignment and domain information
>gnl|CDD|204512 pfam10557, Cullin_Nedd8, Cullin protein neddylation domain Back     alignment and domain information
>gnl|CDD|214883 smart00884, Cullin_Nedd8, Cullin protein neddylation domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 740
KOG2166725 consensus Cullins [Cell cycle control, cell divisi 100.0
COG5647773 Cullin, a subunit of E3 ubiquitin ligase [Posttran 100.0
KOG2167661 consensus Cullins [Cell cycle control, cell divisi 100.0
KOG2284728 consensus E3 ubiquitin ligase, Cullin 2 component 100.0
PF00888588 Cullin: Cullin family; InterPro: IPR001373 Cullins 100.0
KOG2285777 consensus E3 ubiquitin ligase, Cullin 1 component 100.0
smart00182142 CULLIN Cullin. 100.0
KOG2165765 consensus Anaphase-promoting complex (APC), subuni 99.96
PF1055768 Cullin_Nedd8: Cullin protein neddylation domain; I 99.78
PF08539158 HbrB: HbrB-like; InterPro: IPR013745 HbrB is invol 97.31
KOG2167661 consensus Cullins [Cell cycle control, cell divisi 94.64
TIGR0161095 phage_O_Nterm phage replication protein O, N-termi 92.84
PF0933952 HTH_IclR: IclR helix-turn-helix domain; InterPro: 91.84
PF1341248 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 90.67
PF0208283 Rrf2: Transcriptional regulator; InterPro: IPR0009 90.49
PF1280262 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP 89.97
PF0104759 MarR: MarR family; InterPro: IPR000835 The MarR-ty 86.81
PF1346368 HTH_27: Winged helix DNA-binding domain; PDB: 3GFL 86.73
PF0822057 HTH_DeoR: DeoR-like helix-turn-helix domain; Inter 86.38
TIGR02337118 HpaR homoprotocatechuate degradation operon regula 85.6
PF1284061 HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_ 85.29
PF0102247 HTH_5: Bacterial regulatory protein, arsR family; 84.09
PRK11512144 DNA-binding transcriptional repressor MarR; Provis 83.08
PF0901269 FeoC: FeoC like transcriptional regulator; InterPr 81.13
TIGR02698130 CopY_TcrY copper transport repressor, CopY/TcrY fa 81.01
>KOG2166 consensus Cullins [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information 
Probab=100.00  E-value=1.8e-125  Score=1069.18  Aligned_cols=719  Identities=50%  Similarity=0.880  Sum_probs=672.8

Q ss_pred             CccCCHHHHHHHHHHHHHHHHHHhcCCCCCCCChHhHHHHHHHHhHhhhcCCCCCcCcccHHHHHHHHHHHHHHHHHhcc
Q 004648            4 KKKLSFEESWALMEQGIAKLKKILKGLPEPPFASEECMTLYTIVYDLCSIELPSAQDCSYSQRLYVKYGEVFEEHMQSDV   83 (740)
Q Consensus         4 ~~~~~f~~~W~~l~~~i~~i~~il~~~~~~~~s~~~y~~lY~~vY~lc~~~~~~~~~~~~~e~LY~~l~~~l~~~l~~~v   83 (740)
                      +.+.+|+.+|..++++++++.+..++-+...++.-+|+.+|+++|++|+++.+.    +.+++||+++++++.+|+.+.+
T Consensus         5 ~~~~~~~~~w~~~~~~~~~l~~~~~~~s~~~~~~~~~~~ly~t~~~~~~~k~~~----~~~~~lY~~l~~~~~~yl~~~~   80 (725)
T KOG2166|consen    5 PKEIDLEVGWSYIETGITKLKRIIEGLSEPAFEQYQFMYLYTTIYNMCLQKPPH----DYSQQLYDKYREVIEEYLIQTV   80 (725)
T ss_pred             ccccchhccHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHhhccCCC----cchHHHHHHHHHHHHHHHHHHH
Confidence            467899999999999999999888654444577888999999999999999654    4459999999999999999988


Q ss_pred             cchhhccchhhHHHHHHHHHHHHHHHHHHHHHHhchhhhhHHhhcCCCccHHHHH-HHHHHHHHHH-HhHHHHHHHHHHH
Q 004648           84 LPSFEDKRGEFMLREFVKQWENINVMGRWLLRFFEYLDRFYVRSQAGLASLIEVP-VVVFRDRVYK-DLKRDVRDTVIAL  161 (740)
Q Consensus        84 ~~~l~~~~~~~~L~~~~~~W~~~~~~~~~l~~vf~YLDr~yv~~~~~~~~i~~l~-l~~f~~~i~~-~~~~~l~~~ll~~  161 (740)
                      .+......++.+|..+++.|.+|+.++.+++++|+||||+||++.++..++++++ +.+|+..++. ++++.+.++++.+
T Consensus        81 ~~~~~~~~~~~~l~~~~~~W~~~~~~~~~~~~i~~YldR~~v~~~~~~~~v~~~~~l~l~r~~v~~~~~~~~~~~all~l  160 (725)
T KOG2166|consen   81 LPALREKHDEYMLRELAKRWNNHKVLVRWLSDFFMYLDRYYVAQSRRKLPTLNEVGLTCFRDLVYKFEMQSEAIDALLAL  160 (725)
T ss_pred             HHHHHhcCcHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhcCCCCcccceeeEEeehHHHHHHHHHHHHHHHHHH
Confidence            7777777888999999999999999999999999999999999443666676666 9999988877 5999999999999


Q ss_pred             HHHHhcCCccCHHHHHHHHHHHHHhCCcchhchHHHHHHHHHHHHHHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHH
Q 004648          162 IDEEREGEKIDRALVKKAVDIFVGIGILDMDFYRQDFEEQMIDDAGCYYLRKASSWILNDSCPEYMIKAEECLKKERDRA  241 (740)
Q Consensus       162 I~~~R~g~~id~~~lk~vi~~l~~l~~~~~~~Y~~~FE~~~l~~t~~yY~~~s~~~l~~~s~~eYl~~ve~~l~~E~~r~  241 (740)
                      |..+|.|+.||+..|+++++|++.+|.+..++|..+||++|++.|+.||..+++.|+...++++|+.+|+.++.+|..|+
T Consensus       161 I~~eR~ge~in~~~i~~~~~~~~~lg~~~~s~Y~~~Fe~~fl~~t~~~y~~~~~~~l~~~~~~~yl~k~e~~l~~e~~r~  240 (725)
T KOG2166|consen  161 IHKEREGEQIDRELIRNVIDVYVELGMGELSFYEEDFERKFLQDTASYYSEEASEWLEENSCLDYLKKIEECLKEERERV  240 (725)
T ss_pred             HHhhcccccccHHHHhhHHHHHHhccccchhHHHHHhHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999998899999999999999999999


Q ss_pred             ccccCcccHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcCchhhHHHHHHhhhhhcCCcHHHHHHHHHHHHHHHHHH
Q 004648          242 VYYFHTRSESKLIEKVQHELLVVHRNQLLENEKSGCRALISQEKFDDLSRIFRLYDETRTGLEPVAGIFKQYFIDQGKAL  321 (740)
Q Consensus       242 ~~yL~~~t~~kl~~~l~~~LI~~~~~~ll~~~~~~~~~ll~~~~~~~L~~ly~L~~~~~~~l~~l~~~~~~~i~~~g~~~  321 (740)
                      ..||+..+.+++.+.++.+++..+.+.+++..++||..|+.+++.++|.+||+|+++++.|++++++.|+.|++.+|..+
T Consensus       241 ~~yl~~~~e~~~~~~le~~~~~~~~~~~~e~~~sgf~~~l~~~~~edl~~my~l~~r~~~gl~~l~~~~~~~~~~eg~~l  320 (725)
T KOG2166|consen  241 THYLHSSTEPKLVEVVEDELIVVFADDLEEMEHSGFRALLNDDKLEDLSRMYRLFRRILPGLEPLASVFKQHVREEGNAL  320 (725)
T ss_pred             HhhhhhcccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHhccchhHHHHHHHHhhcccccchhHHHHHHHHHHhhHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             HHhhHHhhhhhcccchHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHhccCCCccCcHHHHHHHHHHHhccC
Q 004648          322 VHQAEEDVRNKTANMEQNLVGKILELHDKFMAYVSICFGDHKLFLMALKEAFEVFCNESIVEISSAEILATFCDNLFKNS  401 (740)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~v~~ll~l~~~~~~l~~~~F~~~~~f~~~l~~af~~~~n~~~~~~~~~e~La~y~D~~lk~~  401 (740)
                      +........    ..|..+|+.+++++++|..++..||+++..|..+++.||..|+|.+..  ..+|+||+|||.+||++
T Consensus       321 ~~r~~~~~~----~~~~~~v~~~l~~~~~~~~~~~~~f~~d~~f~~~ld~a~~~fin~n~~--~~~E~la~y~D~~lkk~  394 (725)
T KOG2166|consen  321 VARPAETAA----TNPVEYVQGLLELHDKYKVLVKECFANDTLFKKALDAAFEEFINKNVA--TSAELLATYCDDILKKG  394 (725)
T ss_pred             hhhhhhhcc----cchHHHHhccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHcccCC--CcHHHHHHHhHHHhccc
Confidence            876654321    468999999999999999999999999999999999999999999863  23699999999999995


Q ss_pred             CCCCCChHHHHHHHHHHhHHhccccchHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHhhCCchHHhHHHHHHHHH
Q 004648          402 DAEKLSDETVERTMDKVIVLLGYFKYKDLFAEFYRKKLARRLLFDKGGNKDYDKTFLSKLKQHSGGHFTTKMEGMITDVV  481 (740)
Q Consensus       402 ~~~~~~~~e~~~~l~~i~~lf~~l~~KD~F~~~Y~~~LakRLL~~~s~s~~~E~~~i~~Lk~~~G~~~t~kl~~M~~D~~  481 (740)
                      . .+.++++++..+++++.+|+|+.+||+|+.+|+++||||||+++|.|+++|+.||++|+++||.+||+||++|++|+.
T Consensus       395 ~-k~~~e~~ie~~l~~v~~l~~yisdKdvF~~~Ykk~lakRLl~~~S~sdd~E~~mIsklk~~~g~~~T~kL~~Mf~D~~  473 (725)
T KOG2166|consen  395 S-KKLSDEAIEDTLEKVVKLLKYISDKDVFAEFYKKVLARRLLFDRSASDDHEKSLITKLKNLCGEQFTSKLEGMFTDLT  473 (725)
T ss_pred             c-cCCchhHHHhHhhcceeeeeeccHHHHHHHHHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHhHHHHHHHhhcccHH
Confidence            4 678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhcCCCCCCCCceEEEEeecCCCCCCCCCCccCCHhHHHHHHHHHHHHhhcCCCceeEeccCccceEE
Q 004648          482 LARENQTALDDWFSSNLNEKPQFDLSVMVLTTGSWPSYKFFGLNLPSEMVKGVESFKKFYGTKTKARKLTWIYSLGNCHV  561 (740)
Q Consensus       482 ~S~~~~~~f~~~~~~~~~~~~~~~~~~~VLt~~~WP~~~~~~~~lP~~l~~~~~~f~~~Y~~k~~~R~L~w~~~l~~~~i  561 (740)
                      .|++++..|+++  .+.....+++|.|.|||+|+||.+++.++.||++|.++++.|..||..+|+||+|.|+|++|+|+|
T Consensus       474 ~s~~l~~~F~~~--~~~~~~~~~df~v~VLt~g~WP~~~~~~~~LP~el~~~~e~F~~~Y~~kh~gR~L~w~~~l~~~ei  551 (725)
T KOG2166|consen  474 LSRELQTAFADY--ANYSANLGIDFTVTVLTTGFWPSYKSTDINLPSEMSDCVEMFKGFYATKHNGRRLTWIYSLGTGEI  551 (725)
T ss_pred             HHHHHHHHHHhh--hchhccCCCceeEEEeecCCcCCccCCCCCCChhHHHHHHHHHHHHhhccCCCeeeeeeccCceEE
Confidence            999999999987  122224579999999999999998888899999999999999999999999999999999999999


Q ss_pred             EEEecCeeEEEEecHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHHHhhcccccccccCCCCCCCCCCCceeecc
Q 004648          562 NGKFELKAIELIVSTYQAACLMLFNDADRLSFSEILTQLNLNKGDLIRVLHSLSCSKHKILNKEPNTKTISQSDSFEFNA  641 (740)
Q Consensus       562 ~~~~~~~~~~l~~s~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~~~~~~~~~~N~  641 (740)
                      .++|.+++++|+|||+|||||++||+.+.+|+++|.++|+++.+++.++|+||++.|.+++.+ |.++. ++++.|.+|.
T Consensus       552 ~~~~~~~~~~l~vst~Qm~VLlLFN~~d~lt~~eI~~~t~i~~~~l~~~L~Sl~~~K~~v~~~-~~s~~-~~~~~~~~N~  629 (725)
T KOG2166|consen  552 NGKFDKKTVELQVSTYQMAVLLLFNNTEKLTYEEILEQTNLGHEDLARLLQSLSCLKYKILLK-PMSRT-SPNDEFAFNS  629 (725)
T ss_pred             EEEecCceEEEEEEhHHHHHHHHccchhhccHHHHHHHhCCCHHHHHHHHHHHHHHhHhhccC-ccccC-CCCcEEEeec
Confidence            999999999999999999999999999999999999999999999999999999888777766 77777 8899999999


Q ss_pred             cCCCCCcceeccCCCcchhhhhHHhHHhhhhhchhhheeecccCCCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHhhh
Q 004648          642 KFTDRMRRIRIPLPPVDDRREINEDVGKDRRHNIDAALVRIMKSRKVLGYQQLISECVEMLSHSFKPEIKAIKSRIDDLI  721 (740)
Q Consensus       642 ~F~~~~~~i~i~~~~~~e~~~~~~~v~~~R~~~i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LI  721 (740)
                      +|+++.+|+++|.++..+.+++.+.+++||+..|+||||||||+||.|.|++|+.||++|+++||.|++.+||+|||.||
T Consensus       630 ~f~sk~~Rv~i~~~~~~e~~~~~~~ve~dRk~~i~AaIVRIMK~rK~l~h~~Lv~Ev~~ql~~RF~p~v~~IKk~Ie~LI  709 (725)
T KOG2166|consen  630 KFTSKMRRVKIPLPPMDERKKVVEDVDKDRKYAIDAAIVRIMKSRKVLGHQQLVSEVVEQLSERFKPDIKMIKKRIEDLI  709 (725)
T ss_pred             cccCcceeeccCCCCchhHHHHHhhhhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHH
Confidence            99999999999988888888899999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhccccCCCCCCccee
Q 004648          722 NREFIERDSKDPTMFNY  738 (740)
Q Consensus       722 ereyi~r~~~d~~~y~Y  738 (740)
                      |||||+|| +|+++|+|
T Consensus       710 EkeYleR~-~~~~~Y~Y  725 (725)
T KOG2166|consen  710 EREYLERD-ENPNIYRY  725 (725)
T ss_pred             HHHHHhcc-CCCCcccC
Confidence            99999999 89999998

>COG5647 Cullin, a subunit of E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2167 consensus Cullins [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG2284 consensus E3 ubiquitin ligase, Cullin 2 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00888 Cullin: Cullin family; InterPro: IPR001373 Cullins are a family of hydrophobic proteins that act as scaffolds for ubiquitin ligases (E3) Back     alignment and domain information
>KOG2285 consensus E3 ubiquitin ligase, Cullin 1 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>smart00182 CULLIN Cullin Back     alignment and domain information
>KOG2165 consensus Anaphase-promoting complex (APC), subunit 2 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF10557 Cullin_Nedd8: Cullin protein neddylation domain; InterPro: IPR019559 This is the neddylation site of cullin proteins, which are a family of structurally related proteins containing an evolutionarily conserved cullin domain Back     alignment and domain information
>PF08539 HbrB: HbrB-like; InterPro: IPR013745 HbrB is involved in hyphal growth and polarity [] Back     alignment and domain information
>KOG2167 consensus Cullins [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>TIGR01610 phage_O_Nterm phage replication protein O, N-terminal domain Back     alignment and domain information
>PF09339 HTH_IclR: IclR helix-turn-helix domain; InterPro: IPR005471 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities Back     alignment and domain information
>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A Back     alignment and domain information
>PF02082 Rrf2: Transcriptional regulator; InterPro: IPR000944 The following uncharacterised bacterial proteins have been shown to be evolutionary related, Desulfovibrio vulgaris protein Rrf2; Escherichia coli hypothetical proteins yfhP and yjeB; Bacillus subtilis hypothetical proteins yhdE, yrzC and ywgB; Mycobacterium tuberculosis hypothetical protein Rv1287; and Synechocystis sp Back     alignment and domain information
>PF12802 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP4_B 3KP2_A 3KP5_A 3KP3_B 3KP7_A 3NQO_B 3K0L_B Back     alignment and domain information
>PF01047 MarR: MarR family; InterPro: IPR000835 The MarR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 135 amino acids present in transcription regulators of the MarR/SlyA family, involved in the development of antibiotic resistance Back     alignment and domain information
>PF13463 HTH_27: Winged helix DNA-binding domain; PDB: 3GFL_A 2YR2_B 3GFM_A 3GFJ_A 3GF2_A 3GEZ_A 2GXG_A 3GFI_A 2EB7_A Back     alignment and domain information
>PF08220 HTH_DeoR: DeoR-like helix-turn-helix domain; InterPro: IPR001034 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism Back     alignment and domain information
>TIGR02337 HpaR homoprotocatechuate degradation operon regulator, HpaR Back     alignment and domain information
>PF12840 HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_A 1Y0U_B 2QUF_B 2QLZ_C 2OQG_B 2ZKZ_C 3PQK_A 3PQJ_D 3F6O_B Back     alignment and domain information
>PF01022 HTH_5: Bacterial regulatory protein, arsR family; InterPro: IPR001845 Bacterial transcription regulatory proteins that bind DNA via a helix-turn-helix (HTH) motif can be grouped into families on the basis of sequence similarities Back     alignment and domain information
>PRK11512 DNA-binding transcriptional repressor MarR; Provisional Back     alignment and domain information
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif Back     alignment and domain information
>TIGR02698 CopY_TcrY copper transport repressor, CopY/TcrY family Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query740
2hye_C759 Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Compl 1e-98
4a0k_A742 Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp 2e-98
4a0c_C741 Structure Of The Cand1-Cul4b-Rbx1 Complex Length = 1e-93
4a0l_E726 Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp 2e-93
1ldj_A760 Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiqu 9e-81
1u6g_A776 Crystal Structure Of The Cand1-Cul1-Roc1 Complex Le 1e-80
1ldk_B366 Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiqu 8e-48
3rtr_A368 A Ring E3-Substrate Complex Poised For Ubiquitin-Li 9e-45
3dpl_C382 Structural Insights Into Nedd8 Activation Of Cullin 3e-29
4f52_A282 Structure Of A Glomulin-Rbx1-Cul1 Complex Length = 8e-28
1ldk_A396 Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiqu 1e-27
3dqv_C382 Structural Insights Into Nedd8 Activation Of Cullin 2e-25
4ap2_B410 Crystal Structure Of The Human Klhl11-cul3 Complex 3e-25
4apf_B388 Crystal Structure Of The Human Klhl11-cul3 Complex 6e-25
4eoz_B364 Crystal Structure Of The Spop Btb Domain Complexed 2e-23
4a64_A354 Crystal Structure Of The N-Terminal Domain Of Human 6e-22
2wzk_A391 Structure Of The Cul5 N-Terminal Domain At 2.05a Re 8e-16
2do7_A101 Solution Structure Of The Winged Helix-Turn-Helix M 4e-12
1iuy_A92 Solution Structure Of The Cullin-3 Homologue Length 4e-12
3tdu_C77 N-Terminal Acetylation Acts As An Avidity Enhancer 6e-11
3o2p_E88 A Dual E3 Mechanism For Rub1 Ligation To Cdc53: Dcn 2e-04
3o6b_B76 A Dual E3 Mechanism For Rub1 Ligation To Cdc53: Dcn 3e-04
>pdb|2HYE|C Chain C, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex Length = 759 Back     alignment and structure 
Iteration: 1

 Score =  357 bits (917), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 223/706 (31%), Positives = 373/706 (52%), Gaps = 40/706 (5%)
Query: 43  LYTIVYDLCSIELPSAQDCSYSQRLYVKYGEVFEEHMQSDVLPSFEDKRGEFM-LREFVK 101
           LY  V +LCS ++        S  LY +  +  E+H+Q+ +LP  ED     + L++   
Sbjct: 86  LYQAVENLCSHKV--------SPMLYKQLRQACEDHVQAQILPFREDSLDSVLFLKKINT 137
Query: 102 QWENINVMGRWLLRFFEYLDRFYVRSQAGLASLIEVPVVVFRDRVYKD--LKRDVRDTVI 159
            W++       +   F +LDR YV   + L S+ ++ + +FR  +  D  ++    D ++
Sbjct: 138 CWQDHCRQMIMIRSIFLFLDRTYVLQNSTLPSIWDMGLELFRTHIISDKMVQSKTIDGIL 197
Query: 160 ALIDEEREGEKIDRALVKKAVDIFVGIGIL-DMDFYRQDFEEQMIDDAGCYYLRKASSWI 218
            LI+ ER GE +DR+L++        +G+L D+  Y+  FE + +++  C Y  +    +
Sbjct: 198 LLIERERSGEAVDRSLLRSL------LGMLSDLQVYKDSFELKFLEETNCLYAAEGQRLM 251
Query: 219 LNDSCPEYMIKAEECLKKERDRAVYYFHTRSESKLIEKVQHELLVVHRNQLLENEKSGCR 278
                PEY+    + L++E DR + Y    ++  LI  V+ +LL  H   +L+    G  
Sbjct: 252 QEREVPEYLNHVSKRLEEEGDRVITYLDHSTQKPLIACVEKQLLGEHLTAILQK---GLD 308
Query: 279 ALISQEKFDDLSRIFRLYDETRTGLEPVAGIFKQYFIDQGKALVHQAEEDVRNKTANMEQ 338
            L+ + +  DL+++++L+   R G + +   + +Y    G A+V   E+D         +
Sbjct: 309 HLLDENRVPDLAQMYQLFSRVRGGQQALLQHWSEYIKTFGTAIVINPEKD---------K 359
Query: 339 NLVGKILELHDKFMAYVSICFGDHKLFLMALKEAFEVFCNESIVEISSAEILATFCDNLF 398
           ++V  +L+  DK    + +CF  ++ F+  +KE+FE F N+       AE++A   D+  
Sbjct: 360 DMVQDLLDFKDKVDHVIEVCFQKNERFVNLMKESFETFINKR--PNKPAELIAKHVDSKL 417
Query: 399 KNSDAEKLSDETVERTMDKVIVLLGYFKYKDLFAEFYRKKLARRLLFDKGGNKDYDKTFL 458
           +  + E  +DE +ERT+DK+++L  +   KD+F  FY+K LA+RLL  K  + D +K+ L
Sbjct: 418 RAGNKEA-TDEELERTLDKIMILFRFIHGKDVFEAFYKKDLAKRLLVGKSASVDAEKSML 476
Query: 459 SKLKQHSGGHFTTKMEGMITDVVLARENQTALDDWFSSNLNEKPQFDLSVMVLTTGSWPS 518
           SKLK   G  FT+K+EGM  D+ L+++          +  +  P  DL+V +LT G WP+
Sbjct: 477 SKLKHECGAAFTSKLEGMFKDMELSKDIMVHFKQHMQNQSDSGP-IDLTVNILTMGYWPT 535
Query: 519 YKFFGLNLPSEMVKGVESFKKFYGTKTKARKLTWIYSLGNCHVNGKFELKAIELIVSTYQ 578
           Y    ++L  EM+K  E FK FY  K   RKL W  +LG+  +  +F+    E  VS +Q
Sbjct: 536 YTPMEVHLTPEMIKLQEVFKAFYLGKHSGRKLQWQTTLGHAVLKAEFKEGKKEFQVSLFQ 595
Query: 579 AACLMLFNDADRLSFSEILTQLNLNKGDLIRVLHSLSCSKHKILNKEPNTKTISQSDSFE 638
              L++FN+ D  SF EI     +   +L R L SL+C K ++L K P  K +   D F 
Sbjct: 596 TLVLLMFNEGDGFSFEEIKMATGIEDSELRRTLQSLACGKARVLIKSPKGKEVEDGDKFI 655
Query: 639 FNAKFTDRMRRIRIPL----PPVDDRREINEDVGKDRRHNIDAALVRIMKSRKVLGYQQL 694
           FN +F  ++ RI+I        V+++    E V +DR++ IDAA+VRIMK RK LG+  L
Sbjct: 656 FNGEFKHKLFRIKINQIQMKETVEEQVSTTERVFQDRQYQIDAAIVRIMKMRKTLGHNLL 715
Query: 695 ISECVEMLSHSFKPEIKAIKSRIDDLINREFIERDSKDPTMFNYSA 740
           +SE    L    KP    +K RI+ LI+R+++ERD  +P  ++Y A
Sbjct: 716 VSELYNQLKFPVKP--GDLKKRIESLIDRDYMERDKDNPNQYHYVA 759
>pdb|4A0K|A Chain A, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic Site Containing Dna-Duplex Length = 742 Back     alignment and structure
>pdb|4A0C|C Chain C, Structure Of The Cand1-Cul4b-Rbx1 Complex Length = 741 Back     alignment and structure
>pdb|4A0L|E Chain E, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic Site Containing Dna-Duplex Length = 726 Back     alignment and structure
>pdb|1LDJ|A Chain A, Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiquitin Ligase Complex Length = 760 Back     alignment and structure
>pdb|1U6G|A Chain A, Crystal Structure Of The Cand1-Cul1-Roc1 Complex Length = 776 Back     alignment and structure
>pdb|1LDK|B Chain B, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin Ligase Complex Length = 366 Back     alignment and structure
>pdb|3RTR|A Chain A, A Ring E3-Substrate Complex Poised For Ubiquitin-Like Protein Transfer: Structural Insights Into Cullin-Ring Ligases Length = 368 Back     alignment and structure
>pdb|3DPL|C Chain C, Structural Insights Into Nedd8 Activation Of Cullin-Ring Ligases: Conformational Control Of Conjugation Length = 382 Back     alignment and structure
>pdb|4F52|A Chain A, Structure Of A Glomulin-Rbx1-Cul1 Complex Length = 282 Back     alignment and structure
>pdb|1LDK|A Chain A, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin Ligase Complex Length = 396 Back     alignment and structure
>pdb|3DQV|C Chain C, Structural Insights Into Nedd8 Activation Of Cullin-Ring Ligases: Conformational Control Of Conjugation Length = 382 Back     alignment and structure
>pdb|4AP2|B Chain B, Crystal Structure Of The Human Klhl11-cul3 Complex At 2.8a Resolution Length = 410 Back     alignment and structure
>pdb|4APF|B Chain B, Crystal Structure Of The Human Klhl11-cul3 Complex At 3.1a Resolution Length = 388 Back     alignment and structure
>pdb|4EOZ|B Chain B, Crystal Structure Of The Spop Btb Domain Complexed With The Cul3 N- Terminal Domain Length = 364 Back     alignment and structure
>pdb|4A64|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Cul4b At 2.57a Resolution Length = 354 Back     alignment and structure
>pdb|2WZK|A Chain A, Structure Of The Cul5 N-Terminal Domain At 2.05a Resolution Length = 391 Back     alignment and structure
>pdb|2DO7|A Chain A, Solution Structure Of The Winged Helix-Turn-Helix Motif Of Human Cul-4b Length = 101 Back     alignment and structure
>pdb|1IUY|A Chain A, Solution Structure Of The Cullin-3 Homologue Length = 92 Back     alignment and structure
>pdb|3TDU|C Chain C, N-Terminal Acetylation Acts As An Avidity Enhancer Within An Interconnected Multiprotein Complex: Structure Of A Human Cul1whb- Dcn1p-Acetylated Ubc12n Complex Length = 77 Back     alignment and structure
>pdb|3O2P|E Chain E, A Dual E3 Mechanism For Rub1 Ligation To Cdc53: Dcn1(P)-Cdc53(Whb) Length = 88 Back     alignment and structure
>pdb|3O6B|B Chain B, A Dual E3 Mechanism For Rub1 Ligation To Cdc53: Dcn1(P)-Cdc53(Whb) Low Resolution Length = 76 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query740
1ldj_A760 Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc 0.0
2hye_C759 Cullin-4A, CUL-4A; beta propeller, ring finger, zi 1e-178
3dpl_C382 Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus int 2e-94
2wzk_A391 Cullin-5, CUL-5; UBL conjugation pathway, HIV, pho 6e-72
4ap2_B410 Cullin-3, CUL-3; ubiquitination, E3 ligase, cell c 5e-70
4eoz_B364 Cullin-3, CUL-3; E3 ubiquitin ligase, nucleus, pro 7e-70
4a64_A354 Cullin-4B, CUL4B, CUL-4B; cell cycle; 2.57A {Homo 1e-61
1iuy_A92 Cullin-3 homologue; winged helix, structural genom 4e-25
3tdu_C77 Cullin-1, CUL-1; E2:E3, ligase-protein binding com 2e-24
2do7_A101 Cullin-4B, CUL-4B; helix-turn-helix motif, structu 2e-23
3o2p_E88 Cell division control protein 53; ligase, cell cyc 2e-22
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-16
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-06
>1ldj_A Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc ring finger, ligase, ubiquitin, ubiquitination, SCF; 3.00A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 1u6g_A 1ldk_A 1ldk_B 3rtr_A Length = 760 Back     alignment and structure
 Score =  540 bits (1391), Expect = 0.0
 Identities = 207/778 (26%), Positives = 366/778 (47%), Gaps = 64/778 (8%)

Query: 9   FEESWALMEQGIAKLKKILKGLPEPPFASEECMTLYTIVYDLCS---------------- 52
            ++ W  +  GI ++            A    M LYT VY+ C+                
Sbjct: 1   LDQIWDDLRAGIQQV------YTRQSMAKSRYMELYTHVYNYCTSVHQSNQARGAGVPPS 54

Query: 53  ---IELPSAQDCSYSQRLYVKYGEVFEEHMQSDVLPSFEDKRGEFMLREFVKQWENINVM 109
                            LY +  E  + ++ + +L   ED   E +L+ + +QWE+    
Sbjct: 55  KSKKGQTPGGAQFVGLELYKRLKEFLKNYLTN-LLKDGEDLMDESVLKFYTQQWEDYRFS 113

Query: 110 GRWLLRFFEYLDRFYVRSQA-----GLASLIEVPVVVFRDRVYKDLKRDVRDTVIALIDE 164
            + L     YL+R +VR +      G+  +  + +V +RD +++ L + V + V+ LI++
Sbjct: 114 SKVLNGICAYLNRHWVRRECDEGRKGIYEIYSLALVTWRDCLFRPLNKQVTNAVLKLIEK 173

Query: 165 EREGEKIDRALVKKAVDIFVGIGILDMD---------FYRQDFEEQMIDDAGCYYLRKAS 215
           ER GE I+  L+   V  +V +G+ + D          Y++ FE Q + D   +Y R+++
Sbjct: 174 ERNGETINTRLISGVVQSYVELGLNEDDAFAKGPTLTVYKESFESQFLADTERFYTREST 233

Query: 216 SWILNDSCPEYMIKAEECLKKERDRAVYYFHTRSESKLIEKVQHELLVVHRNQLLENEKS 275
            ++  +   EYM KAE  L +E+ R   Y H  ++ +L  K +  L+  H         +
Sbjct: 234 EFLQQNPVTEYMKKAEARLLEEQRRVQVYLHESTQDELARKCEQVLIEKHLEIF----HT 289

Query: 276 GCRALISQEKFDDLSRIFRLYDETRTGLEPVAGIFKQYFIDQGKALVHQAEEDVRNKTAN 335
             + L+  +K +DL R++ L    + GL  +  + + +  +QG A +    E       N
Sbjct: 290 EFQNLLDADKNEDLGRMYNLVSRIQDGLGELKKLLETHIHNQGLAAI----EKCGEAALN 345

Query: 336 MEQNLVGKILELHDKFMAYVSICFGDHKLFLMALKEAFEVFCNESIV------EISSAEI 389
             +  V  +L++H K+ A V   F +   F+ AL +A   F N + V         S E+
Sbjct: 346 DPKMYVQTVLDVHKKYNALVMSAFNNDAGFVAALDKACGRFINNNAVTKMAQSSSKSPEL 405

Query: 390 LATFCDNLFKNSDAEKLSDETVERTMDKVIVLLGYFKYKDLFAEFYRKKLARRLLFDKGG 449
           LA +CD+L K S  +   +  +E T+++V+V+  Y + KD+F +FY K LA+RL+     
Sbjct: 406 LARYCDSLLKKSS-KNPEEAELEDTLNQVMVVFKYIEDKDVFQKFYAKMLAKRLVHQNSA 464

Query: 450 NKDYDKTFLSKLKQHSGGHFTTKMEGMITDVVLARENQTALDDWFSSNLNEKPQFDLSVM 509
           + D + + +SKLKQ  G  +T+K++ M  D+ ++++         +++  E    D S+ 
Sbjct: 465 SDDAEASMISKLKQACGFEYTSKLQRMFQDIGVSKDLNEQFKKHLTNS--EPLDLDFSIQ 522

Query: 510 VLTTGSWPSYKFFGLNLPSEMVKGVESFKKFYGTKTKARKLTWIYSLGNCHVNGKFELKA 569
           VL++GSWP  +     LPSE+ +  + F  FY ++   RKLTW+Y L    +        
Sbjct: 523 VLSSGSWPFQQSCTFALPSELERSYQRFTAFYASRHSGRKLTWLYQLSKGELVTNCFKNR 582

Query: 570 IELIVSTYQAACLMLFNDADRLSFSEILTQLNLNKGDLIRVLHSLSCSKHKILNKEPNTK 629
             L  ST+Q A L+ +N  D  +  ++     +    L +VL  L  SK  +L  E    
Sbjct: 583 YTLQASTFQMAILLQYNTEDAYTVQQLTDSTQIKMDILAQVLQILLKSKLLVLEDENANV 642

Query: 630 T---ISQSDSFEFNAKFTDRMRRIRIPLP----PVDDRREINEDVGKDRRHNIDAALVRI 682
               +      +    + ++  R+ I +P       ++   ++++ +DR+  I AA+VRI
Sbjct: 643 DEVELKPDTLIKLYLGYKNKKLRVNINVPMKTEQKQEQETTHKNIEEDRKLLIQAAIVRI 702

Query: 683 MKSRKVLGYQQLISECVEMLSHSFKPEIKAIKSRIDDLINREFIERDSKDPTMFNYSA 740
           MK RKVL +QQL+ E +  LS  FKP +  IK  ID LI +E++ER   +   ++Y A
Sbjct: 703 MKMRKVLKHQQLLGEVLTQLSSRFKPRVPVIKKCIDILIEKEYLERVDGEKDTYSYLA 760
>2hye_C Cullin-4A, CUL-4A; beta propeller, ring finger, zinc finger, propeller cluster, helical repeats, cullin repeats, protein binding; HET: DNA; 3.10A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 4a0k_A* 4a0c_C 4a0l_E* Length = 759 Back     alignment and structure
>3dpl_C Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} PDB: 3dqv_C Length = 382 Back     alignment and structure
>2wzk_A Cullin-5, CUL-5; UBL conjugation pathway, HIV, phosphoprotein, isopeptide bond, protein binding; 2.05A {Mus musculus} Length = 391 Back     alignment and structure
>4ap2_B Cullin-3, CUL-3; ubiquitination, E3 ligase, cell cycle; HET: EDO; 2.80A {Homo sapiens} PDB: 4apf_B Length = 410 Back     alignment and structure
>4eoz_B Cullin-3, CUL-3; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} PDB: 4apf_B Length = 364 Back     alignment and structure
>4a64_A Cullin-4B, CUL4B, CUL-4B; cell cycle; 2.57A {Homo sapiens} Length = 354 Back     alignment and structure
>1iuy_A Cullin-3 homologue; winged helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.34 Length = 92 Back     alignment and structure
>3tdu_C Cullin-1, CUL-1; E2:E3, ligase-protein binding complex; 1.50A {Homo sapiens} PDB: 3tdz_C Length = 77 Back     alignment and structure
>2do7_A Cullin-4B, CUL-4B; helix-turn-helix motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 101 Back     alignment and structure
>3o2p_E Cell division control protein 53; ligase, cell cycle; 2.23A {Saccharomyces cerevisiae} PDB: 3o6b_B Length = 88 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 740
d2hyec3273 e.40.1.1 (C:403-675) Cullin-4A {Human (Homo sapien 4e-75
d2hyec2347 a.118.17.1 (C:55-401) Cullin-4A {Human (Homo sapie 2e-71
d1ldja3276 e.40.1.1 (A:411-686) Cullin homolog 1, cul-1 {Huma 3e-69
d1ldja2394 a.118.17.1 (A:17-410) Cullin homolog 1, Cul-1 {Hum 2e-68
d1iuya_92 a.4.5.34 (A:) Cullin-3 homologue {Mouse (Mus muscu 4e-26
d1ldja190 a.4.5.34 (A:687-776) Anaphase promoting complex (A 1e-25
d2hyec184 a.4.5.34 (C:676-759) Cullin-4A {Human (Homo sapien 1e-23
>d2hyec3 e.40.1.1 (C:403-675) Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} Length = 273 Back     information, alignment and structure

class: Multi-domain proteins (alpha and beta)
fold: Cullin homology domain
superfamily: Cullin homology domain
family: Cullin homology domain
domain: Cullin-4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  241 bits (617), Expect = 4e-75
 Identities = 98/272 (36%), Positives = 151/272 (55%), Gaps = 2/272 (0%)

Query: 386 SAEILATFCDNLFKNSDAEKLSDETVERTMDKVIVLLGYFKYKDLFAEFYRKKLARRLLF 445
            AE++A   D+  +    ++ +DE +ERT+DK+++L  +   KD+F  FY+K LA+RLL 
Sbjct: 3   PAELIAKHVDSKLRAG-NKEATDEELERTLDKIMILFRFIHGKDVFEAFYKKDLAKRLLV 61

Query: 446 DKGGNKDYDKTFLSKLKQHSGGHFTTKMEGMITDVVLARENQTALDDWFSSNLNEKPQFD 505
            K  + D +K+ LSKLK   G  FT+K+EGM  D+ L+++          +  +  P  D
Sbjct: 62  GKSASVDAEKSMLSKLKHECGAAFTSKLEGMFKDMELSKDIMVHFKQHMQNQSDSGP-ID 120

Query: 506 LSVMVLTTGSWPSYKFFGLNLPSEMVKGVESFKKFYGTKTKARKLTWIYSLGNCHVNGKF 565
           L+V +LT G WP+Y    ++L  EM+K  E FK FY  K   RKL W  +LG+  +  +F
Sbjct: 121 LTVNILTMGYWPTYTPMEVHLTPEMIKLQEVFKAFYLGKHSGRKLQWQTTLGHAVLKAEF 180

Query: 566 ELKAIELIVSTYQAACLMLFNDADRLSFSEILTQLNLNKGDLIRVLHSLSCSKHKILNKE 625
           +    E  VS +Q   L++FN+ D  SF EI     +   +L R L SL+C K ++L K 
Sbjct: 181 KEGKKEFQVSLFQTLVLLMFNEGDGFSFEEIKMATGIEDSELRRTLQSLACGKARVLIKS 240

Query: 626 PNTKTISQSDSFEFNAKFTDRMRRIRIPLPPV 657
           P  K +   D F FN +F  ++ RI+I    +
Sbjct: 241 PKGKEVEDGDKFIFNGEFKHKLFRIKINQIQM 272
>d2hyec2 a.118.17.1 (C:55-401) Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} Length = 347 Back     information, alignment and structure
>d1ldja3 e.40.1.1 (A:411-686) Cullin homolog 1, cul-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 276 Back     information, alignment and structure
>d1ldja2 a.118.17.1 (A:17-410) Cullin homolog 1, Cul-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 394 Back     information, alignment and structure
>d1iuya_ a.4.5.34 (A:) Cullin-3 homologue {Mouse (Mus musculus) [TaxId: 10090]} Length = 92 Back     information, alignment and structure
>d1ldja1 a.4.5.34 (A:687-776) Anaphase promoting complex (APC) {Human (Homo sapiens) [TaxId: 9606]} Length = 90 Back     information, alignment and structure
>d2hyec1 a.4.5.34 (C:676-759) Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} Length = 84 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query740
d1ldja2394 Cullin homolog 1, Cul-1 {Human (Homo sapiens) [Tax 100.0
d2hyec2347 Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} 100.0
d2hyec3273 Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1ldja3276 Cullin homolog 1, cul-1 {Human (Homo sapiens) [Tax 100.0
d1ldja190 Anaphase promoting complex (APC) {Human (Homo sapi 99.84
d2hyec184 Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} 99.82
d1iuya_92 Cullin-3 homologue {Mouse (Mus musculus) [TaxId: 1 99.81
d1lnwa_141 MexR repressor {Pseudomonas aeruginosa [TaxId: 287 85.13
d1lj9a_144 Transcriptional regulator SlyA {Enterococcus faeca 83.64
d2a61a1139 Transcriptional regulator TM0710 {Thermotoga marit 82.01
d1ylfa1138 Hypothetical protein BC1842 {Bacillus cereus [TaxI 80.14
>d1ldja2 a.118.17.1 (A:17-410) Cullin homolog 1, Cul-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cullin repeat-like
family: Cullin repeat
domain: Cullin homolog 1, Cul-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=0  Score=459.71  Aligned_cols=357  Identities=27%  Similarity=0.494  Sum_probs=323.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCC-------------------CCCCCHHHHHH
Q ss_conf             89899999999999999851899999995768899999967420578888-------------------67530899999
Q 004648            9 FEESWALMEQGIAKLKKILKGLPEPPFASEECMTLYTIVYDLCSIELPSA-------------------QDCSYSQRLYV   69 (740)
Q Consensus         9 f~~~W~~l~~ai~~i~~~l~~~~~~~~s~~~y~~lY~~vy~lc~~~~~~~-------------------~~~~~~e~LY~   69 (740)
                      .|++|+.|++||++|   ++++   +++..+||++|++||++|+++.+..                   .....|+.||+
T Consensus         1 ~d~~W~~L~~ai~~I---~~~~---~~~~~~~~~lY~~vy~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~LY~   74 (394)
T d1ldja2           1 LDQIWDDLRAGIQQV---YTRQ---SMAKSRYMELYTHVYNYCTSVHQSNQARGAGVPPSKSKKGQTPGGAQFVGLELYK   74 (394)
T ss_dssp             CHHHHHHHHHHHHHH---TTCC---CCCHHHHHHHHHHHHHHTCCC----------------------------TTHHHH
T ss_pred             CCCHHHHHHHHHHHH---HHCC---CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHH
T ss_conf             963499999999999---8669---9997999999999999994487432000111101121000121025457999999


Q ss_pred             HHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHC-----CCCCCHHHHHHHHHHH
Q ss_conf             99999999887311200001120569999999999999999999998404445677620-----7985177789999999
Q 004648           70 KYGEVFEEHMQSDVLPSFEDKRGEFMLREFVKQWENINVMGRWLLRFFEYLDRFYVRSQ-----AGLASLIEVPVVVFRD  144 (740)
Q Consensus        70 ~l~~~l~~~l~~~v~~~l~~~~~~~~L~~~~~~W~~~~~~~~~l~~if~YLdr~yv~~~-----~~~~~i~~~~l~~f~~  144 (740)
                      ++++.++.|+.+. .+.+....++.+|..+...|.+|+.++.+|+++|+||||+|+.++     ...++|+++|+.+|++
T Consensus        75 ~l~~~l~~~l~~i-~~~~~~~~~~~~L~~~~~~W~~~~~~~~~l~~if~YLdr~yv~~~~~~~~~~~~~I~~~~l~~fr~  153 (394)
T d1ldja2          75 RLKEFLKNYLTNL-LKDGEDLMDESVLKFYTQQWEDYRFSSKVLNGICAYLNRHWVRRECDEGRKGIYEIYSLALVTWRD  153 (394)
T ss_dssp             HHHHHHHHHHHHH-HHTTCSCTTTTHHHHHHHHHHHHHHHHHHHHHHTHHHHHHSSSCCC-------CCHHHHHHHTTHH
T ss_pred             HHHHHHHHHHHHH-HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             9999999999999-987743787999999999999999999999999988668998860444566654199999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCC---------CHHCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999976999999999999999469926989899999999870876---------51303897799999999999999988
Q 004648          145 RVYKDLKRDVRDTVIALIDEEREGEKIDRALVKKAVDIFVGIGIL---------DMDFYRQDFEEQMIDDAGCYYLRKAS  215 (740)
Q Consensus       145 ~i~~~l~~~l~~~ll~~I~~~R~g~~id~~~i~~~i~~~~~l~~~---------~~~~Y~~~FE~~~l~~t~~yY~~~s~  215 (740)
                      .+|.++.+++.++++++|.++|+|+.+|+.++++++.|++.+|..         .+.+|.+.||++||++|..||+.++.
T Consensus       154 ~v~~~~~~~l~~~il~~I~~~R~g~~i~~~li~~~i~~l~~l~~~~~~~~~~~~~~~~Y~~~FE~~~L~~t~~~Y~~~~~  233 (394)
T d1ldja2         154 CLFRPLNKQVTNAVLKLIEKERNGETINTRLISGVVQSYVELGLNEDDAFAKGPTLTVYKESFESQFLADTERFYTREST  233 (394)
T ss_dssp             HHTTTTTTHHHHHHHHHHTTTSCCTTCCTHHHHHHHHHHHHTSCCSSSSSCSSCCCHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999867896669999999999999483232333013227887899899999999999999999


Q ss_pred             HHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf             67624991289999999999999888020591429999999999999998999998213347898601846459999995
Q 004648          216 SWILNDSCPEYMIKAEECLKKERDRAVYYFHTRSESKLIEKVQHELLVVHRNQLLENEKSGCRALISQEKFDDLSRIFRL  295 (740)
Q Consensus       216 ~~l~~~s~~eYl~~v~~~l~eE~~r~~~~L~~~t~~kl~~~l~~~LI~~~~~~ll~~~~~~~~~ll~~~~~~~L~~ly~L  295 (740)
                      .|++++++++|+.+|+.++++|.+||..||+++|.+++.++++++||.+|.+.|.    +||..||++++.++|++||+|
T Consensus       234 ~~l~~~~~~eYl~~v~~~l~eE~~r~~~yl~~~t~~~l~~~l~~~LI~~~~~~l~----~~~~~ll~~~~~~~L~~lY~L  309 (394)
T d1ldja2         234 EFLQQNPVTEYMKKAEARLLEEQRRVQVYLHESTQDELARKCEQVLIEKHLEIFH----TEFQNLLDADKNEDLGRMYNL  309 (394)
T ss_dssp             HHHHHSCTTSSHHHHHHHHHHHHHTTTTTTCSSSSHHHHHHHHHHHSSSSSHHHH----HHHHHHHHSCCTTHHHHHHHH
T ss_pred             HHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHCCCHHHHHHHHHH
T ss_conf             9998498358999999999999999997468646999999999999999999999----999999871658899999999


Q ss_pred             HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf             21202991779999999999999999985688664213443599999999999999999998608998899999999999
Q 004648          296 YDETRTGLEPVAGIFKQYFIDQGKALVHQAEEDVRNKTANMEQNLVGKILELHDKFMAYVSICFGDHKLFLMALKEAFEV  375 (740)
Q Consensus       296 ~~~~~~~l~~l~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~v~~ll~l~~~~~~l~~~~F~~~~~f~~~l~~af~~  375 (740)
                      |+++++|++.++..|++||.+.|.+++.......    .+.+..||+.|++++++++.++..||++|+.|..++++||+.
T Consensus       310 ~~rv~~~~~~l~~~~~~~I~~~G~~~i~~~~~~~----~~~~~~~V~~ll~l~~~~~~ii~~~F~~d~~f~~~l~~af~~  385 (394)
T d1ldja2         310 VSRIQDGLGELKKLLETHIHNQGLAAIEKCGEAA----LNDPKMYVQTVLDVHKKYNALVMSAFNNDAGFVAALDKACGR  385 (394)
T ss_dssp             HHHSTTCHHHHHHHHHHHHHHHHHHHHHHHTTSG----GGCHHHHHHHHHHHHHHHHHHHHTTTTTCHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC----CCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf             8655351899999999999999999997233114----578689999999999999999999859988999999999999


Q ss_pred             HHCCC
Q ss_conf             96167
Q 004648          376 FCNES  380 (740)
Q Consensus       376 ~~N~~  380 (740)
                      |+|++
T Consensus       386 fiN~n  390 (394)
T d1ldja2         386 FINNN  390 (394)
T ss_dssp             HHHSS
T ss_pred             HHCCC
T ss_conf             83766
>d2hyec2 a.118.17.1 (C:55-401) Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2hyec3 e.40.1.1 (C:403-675) Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ldja3 e.40.1.1 (A:411-686) Cullin homolog 1, cul-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ldja1 a.4.5.34 (A:687-776) Anaphase promoting complex (APC) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2hyec1 a.4.5.34 (C:676-759) Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1iuya_ a.4.5.34 (A:) Cullin-3 homologue {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1lnwa_ a.4.5.28 (A:) MexR repressor {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1lj9a_ a.4.5.28 (A:) Transcriptional regulator SlyA {Enterococcus faecalis [TaxId: 1351]} Back     information, alignment and structure
>d2a61a1 a.4.5.28 (A:5-143) Transcriptional regulator TM0710 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1ylfa1 a.4.5.55 (A:5-142) Hypothetical protein BC1842 {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure