Citrus Sinensis ID: 004661

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------74
Protein Sequence
MASAQVLPTSRKQEHLEAGKRKLEEFRKKKAAERAKKASSVSQPQASDFSLHDQHHLEADRVRVTDLDGAGTSDGPDKAVVSLPLVMHNDDNKALKLAQQSQQVSLSDKRINSNCFENDLNSSSAYLAQTYSNNQETSGSAGPVNVSNSQETKDVNNDFVIYSSGQGRLRDGIMSNQFLSLLPEASQDYDSSNSSKSGFQGIEESQSKGNDSFPKVPTLVNSGPSHDFVTKISPQNSVSTLFQSKPSNAIALGNGHSFHSSSEGTAHLTTSTGGSASEVGLNTPSTTNFSDPVSFNTGEGKPSNSASGLASLQSTPFKRSEYSGYNFDAGNSFNHVPVSSATNKFTLGKSRASFLDSLNVPRASSGTLFEQTEPERDSFMSSSSLNSMDVLGSSPAQNPSMEKETTGAFSKTTTSNIPSAFDYLGNPTVSTSDRGDIRRLGSNESSIENQHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKSIDFGKTAASTVNASTSTEDLAITDTTLDNSNQDTHDDASLPRIDASGSTLLPESGRLALEGLAVNIPHDQMRMIHNINALISELALEKEELVQALSSELAQSSKLKV
Secondary Structure (PSIPRED)
cccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
ccccEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccEEEEcccccccccccccccEccccccEcccccccccccccccccccccccccccccccccccccccHEcccccccccccccccccccccccccccccccEEccccccccccEEccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccHHHHccccccccHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
masaqvlptsrkqEHLEAGKRKLEEFRKKKAAERAkkassvsqpqasdfslhdqhhleadrvrvtdldgagtsdgpdkavvslplvmhnddnKALKLAQQSQqvslsdkrinsncfendlnssSAYLAQTYsnnqetsgsagpvnvsnsqetkdvnndFVIYssgqgrlrdgimsnqflsllpeasqdydssnssksgfqgieesqskgndsfpkvptlvnsgpshdfvtkispqnsvstlfqskpsnaialgnghsfhsssegtahlttstggsasevglntpsttnfsdpvsfntgegkpsnsasglaslqstpfkrseysgynfdagnsfnhvpvssatnkftlgkSRASfldslnvprassgtlfeqteperdsfmsssslnsmdvlgsspaqnpsmekettgafsktttsnipsafdylgnptvstsdrgdirrlgsnessienqhgfystkhnEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAenssltdsynQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRkasgsgksidfgktaastvnaststedlaitdttldnsnqdthddaslpridasgstllpesgrLALEGlavniphdqmRMIHNINALISELALEKEELVQALSSELAQSSKLKV
Flexible Loop (DISEMBL)
masaqvlptsrkqehleagkrKLEEFRKKKAAerakkassvsqpqasdfslHDQHHLEADRVRVTDLDGAGTSDGPDKAVVSLPLVMHNDDNKALKLAQQSQQVSLSDKRINSNCFENDLNSSSAYLAQTYSNNQETSGSAGPVNVSnsqetkdvnnDFVIYSSGQGRLRDGIMSNQFLSLLPEASQDYDSSNSSKSGFQGIEESqskgndsfpkVPTLVNSGPSHDFVTKISPQNSVSTLFQSKPSNAIALGNGHSFHSSSEGTAHLTTSTGGSASEVGLNTPSTTNFSDPVSFNTGEGKPSNSASGLASLQSTPFKRSEYSGYNFDAGNSFNHVPVSSATNKFTLGKSRASFldslnvprassgtlfeqteperDSFMSSSSLNSMDVLGSSPAQNPSMEKETTGAFSKTTTSNIPSAFDYLGNPTVSTSDRGDIRRLGSNESSIENQHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAaenssltdsynqQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASevigleekalrlrsnelklerqlensqseisSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRkasgsgksidfgktaastvnaststedLAITDTTLDNSNQDTHDDASLPRIDASGSTLLPESGRLALEGLAVNIPHDQMRMIHNINALISELALEKEELVQALSselaqssklkv
Low Complexity Region (SEG)
MASAQVLPTSRKQEHLEAGkrkleefrkkkaaerakkaSSVSQPQASDFSLHDQHHLEADRVRVTDLDGAGTSDGPDKAVVSLPLVMHNDDNKALKLAQQSQQVSLSDKRINSNCFENDLNSSSAYLAQTYSNNQETSGSAGPVNVSNSQETKDVNNDFVIYSSGQGRLRDGIMSNQFLSLLPEAsqdydssnssksGFQGIEESQSKGNDSFPKVPTLVNSGPSHDFVTKISPQNSVSTLFQSKPSNAIALGNGHSFHSSSEGTAHLTTSTGGSASEVGLNTPSTTNFSDPVSFNTGEGKPSNSASGLASLQSTPFKRSEYSGYNFDAGNSFNHVPVSSATNKFTLGKSRASFLDSLNVPRASSGTLFEQTEPERdsfmsssslnsmdvlgssPAQNPSMEKETTGAFSKTTTSNIPSAFDYLGNPTVSTSDRGDIRRLGSNESSIENQHGFYSTKHNEDFAALEQHIEDLTQEKFALQrsleasralseslaaensslTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENsqseissykkkisslekeRQDFQSTIEALQEEKKMMQSKLRKASGSGKSIDFGKtaastvnaststEDLAITDTTLDNSNQDTHDDASLPRIDASGSTLLPESGRLALEGLAVNIPHDQMRMIHNINALISELALEKEELVQALSSELAQSSKLKV
Disordered region (IsUnstruct)
*************************************************************************************************************************************************************DFVIYSS************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************IKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEE***************************************************************************************************************************LALEGLAVNIPHDQMRMIHNINALISELALE********************
Disordered Region (DISOPRED)
*********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************IHNINALISELALE********************
Disordered Region (DISEMBL)
******************GKRKLEEF*************************HDQHHLEADRVRVTDLDGAGTSDGPDKAVVSLPLVMHNDDNKALKL***********KRINSNCFENDLNSSSAYLAQTYS**************SNSQETKDVNNDFVIYSSGQGRLRDGIMSNQFLSLLPEA**************************SFPKVPTLVNSGPSHDFVTKISPQNSVSTLFQSKPSNAIALGNGHSFHSSSEGTAHLTTSTGGSASEVGLNTPSTTNFSDPVSFN*****************STPFKRSEYSGYNFDAGNSFNHVPVSSATNKFTLGKSRASFLDSLNVPRASSGTLFE**************LNSM**********************KTTTSNIPSAFDYLGNPTVSTSDRGDIRRLGSNESSIENQHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLE****************************STIEALQEE****************SIDFGKTAASTVNASTSTEDLAITDTTLDNSNQDTHDDASLPRIDASGSTLLPESGRLALEGLAVNIPHDQMRMIHNINALISELALEKEELVQALS***********
Disordered Region (DISPRO)
*************EHLEAGKRKLEEFRKKKAAER***********************************AGTSDGPDKAVVSLPLVMHNDDNKALKLAQ******LSDKRINSNCFEN*LNSSS*Y****************************VNNDFVIYSSGQGRLRDGIMSNQFLSL**********************************V*T**NSGPSHDFVTKI**************SNAIAL*N***F*********LT**TG*SASE********TNFSDP*SFNT******************************************************AS****LNVP**********************************************************************SDRGDIRRLGSNESSIENQHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKSIDFGKTAASTVNASTSTEDLAITDTTLDNSNQDTHDDASLPRIDASGSTLLPESGRLALEGLAVNIPHDQMRMIHNINALISELALEKEELVQALSSEL********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASAQVLPTSRKQEHxxxxxxxxxxxxxxxxxxxxxKASSVSQPQASDFSLHDQHHLEADRVRVTDLDGAGTSDGPDKAVVSLPLVMHNDDNKALKLAQQSQQVSLSDKRINSNCFENDLNSSSAYLAQTYSNNQETSGSAGPVNVSNSQETKDVNNDFVIYSSGQGRLRDGIMSNQFLSLLPEASQDYDSSNSSKSGFQGIEESQSKGNDSFPKVPTLVNSGPSHDFVTKISPQNSVSTLFQSKPSNAIALGNGHSFHSSSEGTAHLTTSTGGSASEVGLNTPSTTNFSDPVSFNTGEGKPSNSASGLASLQSTPFKRSEYSGYNFDAGNSFNHVPVSSATNKFTLGKSRASFLDSLNVPRASSGTLFEQTEPERDSFMSSSSLNSMDVLGSSPAQNPSMEKETTGAFSKTTTSNIPSAFDYLGNPTVSTSDRGDIRRLGSNESSIENQHGFYxxxxxxxxxxxxxxxxxxxxxxxxxxxxLEASRALSESLAAENSSLTDSxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAKILASEVIGLEEKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGKSIDFGKTAASTVNASTSTEDLAITDTTLDNSNQDTHDDASLPRIDASGSTLLPESGRLALEGLAVNIPHDQMRMIHNINALISELALEKEELVQALSSELAQSSKLKV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	739
225433351	804	PREDICTED: uncharacterized protein LOC10	0.964	0.886	0.519	1e-163
356533381	784	PREDICTED: uncharacterized protein LOC10	0.937	0.883	0.475	1e-151
255554298	713	conserved hypothetical protein [Ricinus	0.851	0.882	0.440	1e-115
297831252	728	hypothetical protein ARALYDRAFT_898989 [	0.566	0.575	0.528	1e-109
145338880	714	protein BLISTER [Arabidopsis thaliana] g	0.852	0.882	0.408	1e-108
449458920	607	PREDICTED: uncharacterized protein LOC10	0.771	0.939	0.429	1e-104
356577582	684	PREDICTED: uncharacterized protein LOC10	0.715	0.773	0.404	4e-92
125528809	760	hypothetical protein OsI_04881 [Oryza sa	0.549	0.534	0.448	1e-76
115441767	760	Os01g0911800 [Oryza sativa Japonica Grou	0.549	0.534	0.448	1e-76
414879058	748	TPA: hypothetical protein ZEAMMB73_30879	0.512	0.506	0.445	2e-76

>gi|225433351|ref|XP_002282738.1| PREDICTED: uncharacterized protein LOC100251145 [Vitis vinifera] gi|297741880|emb|CBI33315.3| unnamed protein product [Vitis vinifera]

 Score =  582 bits (1499), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 390/751 (51%), Positives = 497/751 (66%), Gaps = 38/751 (5%)

Query: 1   MASAQVLPTSRKQEHLEAGKRKLEEFRKKKAAERAKKASSVSQPQASDFSLHDQHHLEAD 60
           MASAQVL   RKQEHLEAGKR+LEEFRKKKAA+RAKK +S+SQ Q++D SL  Q  LE +
Sbjct: 1   MASAQVL---RKQEHLEAGKRRLEEFRKKKAADRAKKVASISQLQSADVSLCVQP-LENE 56

Query: 61  RVRVTDLDGAGTSDGPDKAVVSLPLVMHNDDNKALKLAQQSQQVSLSDKRINSNCFENDL 120
           +VRV D DGAG SDG  +AV  +     N+DNK +++ Q S+  S SD          D 
Sbjct: 57  QVRVMDSDGAGISDGVGEAVTKVI----NNDNKKIEIFQNSEPCS-SDIYAKPPFSTKDY 111

Query: 121 NSSSAYLAQTYSNNQ-----ETSGSAGPVNVSNSQETKDVNNDFVIYSSGQGRLRDGIMS 175
            + SA   QT  N+Q     + SG  G V     Q  K+ N+D  I++  +G   + I+S
Sbjct: 112 KAFSADSVQTQVNDQGFNRYDASGFLGLVG----QLAKEKNDDGGIHAGAEGSAYE-IVS 166

Query: 176 NQFLSLLPEASQDYDSSNSSKSGFQGIEESQSKGNDSFPKVPTLVNSGPSHDFVTKISPQ 235
           +Q ++  P+A +D DSS SS+S F  +EE+Q K + S  K  T+++ G S   +   S +
Sbjct: 167 DQSIAF-PQAIRDTDSS-SSQSNFHRMEETQQKDHKSSLKSFTVIDPGISQVPLANASSE 224

Query: 236 NSVSTLFQSKPSNAIALGN-GHSFHSSSEGTAHLTTSTGGSASEVGLNTPSTTNFSDPVS 294
           NS          NAI   N G++   SS  + H  T+   SA  VG + P + +F+  + 
Sbjct: 225 NS---------GNAILPNNYGYANMKSSADSVHPITTAKQSAFGVGQDVPGSVDFNVHML 275

Query: 295 FNTGEGKPSNSASGLASLQ-STPFK-RSEYSGYNFDAGNSFNHVPVSSATNKFTLGKSRA 352
            N  + K S+S   L S   ++P    S  + + FD   S NH+P+ S T +    +SR 
Sbjct: 276 SNKEDKKLSSSFGYLPSTHGASPLASESSSTSFAFDVRGSSNHLPLYSVTPETNARRSRP 335

Query: 353 SFLDSLNVPRASSGTLFEQTEPERDS--FMSSSSLNSMDVLGSSPAQNPSMEKETTGAFS 410
           SFLDS+NVPR  S +    TEP +    F SSS +NSMDVLGSS +     E E    FS
Sbjct: 336 SFLDSINVPRVPSASHLPLTEPGKAEPFFSSSSKVNSMDVLGSSASTKSLAESENFEPFS 395

Query: 411 KTTTSNIPSAFDYLGNPTVSTSDRGDIRRLGSNESSIENQHGFYSTKHNEDFAALEQHIE 470
           K   SN PS FD+  N +VS  +R ++ R G +++S+E +  F+S K NEDFAALEQHIE
Sbjct: 396 KAGNSNGPSLFDHSINSSVSVGNRVEMLRHGLDQNSLERKFEFHSQKQNEDFAALEQHIE 455

Query: 471 DLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLV 530
           DLTQEKF+LQR+LEASRAL+ESLAAENSSLTDSYNQQ SVVNQLKS+MEKLQEEIK QLV
Sbjct: 456 DLTQEKFSLQRALEASRALAESLAAENSSLTDSYNQQGSVVNQLKSDMEKLQEEIKAQLV 515

Query: 531 ELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISS 590
           +LESF+ EYAN +LECNAADERAK+LASEVIGLEEKALRLRS+ELKLERQLENS +EISS
Sbjct: 516 DLESFKIEYANAQLECNAADERAKLLASEVIGLEEKALRLRSSELKLERQLENSNAEISS 575

Query: 591 YKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKSIDFGKTAASTVNASTSTE 650
           +KKK+SSLEKERQD Q TI+ALQEEKK++Q K+RKAS +GKSID  K+     + STST+
Sbjct: 576 FKKKVSSLEKERQDLQLTIDALQEEKKLLQKKVRKASANGKSIDASKSPTDRKDVSTSTD 635

Query: 651 DLAITDTTL---DNSNQDTHDDASLPRIDASGSTLLPESGRLALEGLAVNIPHDQMRMIH 707
           DL   D      + S+ +  + AS+   + S   LLP+ G++  E  +VNIP DQMRMI 
Sbjct: 636 DLVNEDNACMIPETSSLEMLNSASVQANELSSFPLLPDGGQMNFEVSSVNIPADQMRMIQ 695

Query: 708 NINALISELALEKEELVQALSSELAQSSKLK 738
           NINALISELALEKEEL+QAL +E +QSSKLK
Sbjct: 696 NINALISELALEKEELMQALVTESSQSSKLK 726

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356533381|ref|XP_003535243.1| PREDICTED: uncharacterized protein LOC100817279 [Glycine max]

 Score =  543 bits (1400), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 357/751 (47%), Positives = 474/751 (63%), Gaps = 58/751 (7%)

Query: 1   MASAQVLP----TSRKQEHLEAGKRKLEEFRKKKAAERAKKASSVSQPQASDFSLHDQHH 56
           MASAQVLP    +SRKQEHLEAGKR+LEEFRKKKAAER KKA+S  Q   SD SL+ +  
Sbjct: 1   MASAQVLPNSTASSRKQEHLEAGKRRLEEFRKKKAAERTKKAASSGQVHNSDDSLNKKQS 60

Query: 57  LEADRVRVTDLDGAGTSDGPDKAVVSL-PLVMHNDDNKALKLAQQSQQVSLSDKRINSNC 115
            E + VRV + DG  TSD    +V     L M ND N  L  +Q S Q SL+        
Sbjct: 61  SEVENVRVNESDGVTTSDAVGGSVTDTSTLGMRNDKNLNL-FSQSSNQGSLAGSTF---L 116

Query: 116 FENDLNSSSAYLAQTYSNNQE-----TSGSAGPVNVSNSQETKDVNNDFVIYSSGQGRLR 170
             NDLN SS  L + +SN  E      S      + S + E   VN+ + I++ G   + 
Sbjct: 117 TRNDLNMSSTSLGEAHSNIDEGKRYNASSVTASADFSQNNERNKVNDIYGIHAVGVDGIP 176

Query: 171 DGIMSNQFLSLLPEASQDYDSSNSSKSGFQGIEESQSKGNDSFPKVPTLVNSGPSHDFVT 230
               ++Q + L  + SQ++D  N + S   G+ ++QS  ++S  K   + ++  S+ F +
Sbjct: 177 YVTTNHQSVPLCSQESQEFD--NHATSSLHGVNDNQSNKSNSSLKDYAVTDNFSSY-FPS 233

Query: 231 KISPQNSVSTLFQSKPSNAIALGNGHSFHSSSEGTAHLTTSTGGSASEVGLNTPSTTNFS 290
           KI+PQNSV T  Q KP+N+    +G+S                 S    G +   ++ F 
Sbjct: 234 KITPQNSVDTPLQIKPTNSSTFDSGYSH----------------SLLSGGFSDSFSSKFR 277

Query: 291 DPVSFNTGEGKPSNSASGLASLQSTPFKRSEYSGYNFDAGNSFNHVPVSSATNKFTLGKS 350
           + V+         +S + L SL      + + +GY  +A NS NH P+ S   + +  +S
Sbjct: 278 ETVT---------SSDNNLPSLHGATMPKYDSTGY--EARNSSNHTPIHSLPTESSSRRS 326

Query: 351 RASFLDSLNVPRASSGTLFEQTEPERDSFMSS---SSLNSMDVLGSSPAQNPSMEKETTG 407
           R SFLDSLNV R S G+ F Q+E  +DS MS+   SS N  D+ GS+    PS E +   
Sbjct: 327 RPSFLDSLNVTRPSLGSPFHQSE--QDSLMSNYLESSSN--DISGSAYFHKPSEETKIMP 382

Query: 408 AFSKTTTSNIPSAFDYLGNPTVSTSDRGDIRRLGSNESSIENQHGFYSTKHNEDFAALEQ 467
            FS  TT+N+ S+ + L  P+V  +D        + ES +E +H +YS+  NEDF ALEQ
Sbjct: 383 LFSNFTTANVHSSLEPLTTPSVVDNDNQGALITSTRESGMEKKHDYYSSSQNEDFTALEQ 442

Query: 468 HIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKV 527
           HIEDLT+EKF+LQR+LEASR L+ESLA ENS+LTD+YNQQRSVVNQLKS+ME L E+IK 
Sbjct: 443 HIEDLTKEKFSLQRALEASRTLAESLATENSTLTDNYNQQRSVVNQLKSDMENLHEDIKA 502

Query: 528 QLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSE 587
           +LVELE+ ++EY N +LECNAADERAK+LASEVIGLEEKALRLRS+ELKLE+QLEN++ E
Sbjct: 503 RLVELEAIKSEYTNAQLECNAADERAKLLASEVIGLEEKALRLRSSELKLEKQLENAKEE 562

Query: 588 ISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKSIDFGKTAASTVNAST 647
           ISSY+KK+SSL+K+R D QSTIEALQEEKKM+ SKLRKASG GKSI+      S  + ST
Sbjct: 563 ISSYRKKMSSLDKDRHDLQSTIEALQEEKKMLLSKLRKASGIGKSIE---NQTSKRDVST 619

Query: 648 STEDLAITDTTLDNSNQDTHDDASLPRIDASGSTLLPESGRLALEGLAVNIPHDQMRMIH 707
           STEDLA  D   ++SN + +D+A+    +AS  + + E+   +     VNIPHDQMRMI 
Sbjct: 620 STEDLASEDPASNSSNPEINDNAA----EASSLSSVTETRHSSFGVSPVNIPHDQMRMIE 675

Query: 708 NINALISELALEKEELVQALSSELAQSSKLK 738
           NINALISELALEKEEL++AL+SE ++ S++K
Sbjct: 676 NINALISELALEKEELIKALTSESSECSRMK 706

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255554298|ref|XP_002518189.1| conserved hypothetical protein [Ricinus communis] gi|223542785|gb|EEF44322.1| conserved hypothetical protein [Ricinus communis]

 Score =  424 bits (1089), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 328/744 (44%), Positives = 421/744 (56%), Gaps = 115/744 (15%)

Query: 1   MASAQVLPTSRKQEHLEAGKRKLEEFRKKKAAERAKKASSVSQPQASDF-SLHDQHHLEA 59
           MASAQVLP+SRKQEHLEAGKR+LEEFRKKKAA+RA+KA++ SQP AS   S++++  LE+
Sbjct: 1   MASAQVLPSSRKQEHLEAGKRRLEEFRKKKAADRARKAAATSQPLASSVVSVNEKQALES 60

Query: 60  DRVRVTDLDGAGTSDGPDKAVVSLPLVMHNDDNKALKLAQQSQQVSLSDKRINSNCFEND 119
           + VR+TD DGAGTSDGP +  VS   +    D  A+  +    +  L+D  +NS+ F   
Sbjct: 61  EIVRLTDSDGAGTSDGPIEVTVSGTTL---KDADAIPPSMSHYKAPLADIHVNSHDFTRP 117

Query: 120 LNSSSAYLAQTYSNNQETSGSAGPVNVSNSQETKDVNNDFVIYSSGQGRLRDGIMSNQFL 179
            N+S A                   +     ET  +NND   YS  Q    DG++    L
Sbjct: 118 -NASVA------------------ADAKYDIETDQMNNDTDTYSGSQ----DGVVPYVIL 154

Query: 180 SL----LPEASQDYDSSNSSKSGFQGIEESQSKGNDSFPKVPTLVNSGPSHDFVTKISPQ 235
           S     +P  SQ+   S S    FQ +E + S  + +F        + PS    TKIS  
Sbjct: 155 SSRHSSIPPPSQE---SFSQSIPFQSMEYNTSLKDYAF--------TAPS-PLQTKIS-- 200

Query: 236 NSVSTLFQSKPSNAIALGNGHSFHSSSEGTAHLTTSTGGSASEVGLNTPSTTNFSDPVSF 295
                      SNA  L     F        H     G S     L      +F+  +  
Sbjct: 201 -----------SNASTLVTDVDF------IQHNNNLRGSS-----LEVEQDKHFNGSLRN 238

Query: 296 NTGEGKPSNSASGLASLQSTPFKRSEYSGYNFDAGNSFNHVPVSSATNKFTLGKSRASFL 355
           + GE   S S  G  S      + S+  GY+ D+ +S NH  + S T++    +SR SFL
Sbjct: 239 DFGEANFSISLGGFPSAYGKSMQTSDTIGYDSDSKSSSNHTQLLSGTSEPNSRRSRPSFL 298

Query: 356 DSLNVPRASSGTLFEQTEPERDSFMSSSSLNSMDVLGSSPAQNPSMEKETTGAFSKTTTS 415
           DSLNV RASSGT F+ TE +++SFM   S N M  L SS  QN S+E +T G        
Sbjct: 299 DSLNVTRASSGTSFQPTELQKESFMPGKS-NGMGALDSSTFQNLSVEAQTLG-------- 349

Query: 416 NIPSAFDYLGNPTVSTSDRGDIRRLGSNESSIENQHGFYSTKHNEDFAALEQHIEDLTQE 475
                     +P   ++    +     +E+S   +H FYS+KHNEDFAALEQHIEDLTQE
Sbjct: 350 ---------HHPMTFSASSNSVEMSNIDENSWGRKHEFYSSKHNEDFAALEQHIEDLTQE 400

Query: 476 KFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESF 535
           KF+LQR+LE+SRAL+ESLAAENSSLTD+YNQQRS VNQLKS+MEKLQEEIKV LVELES 
Sbjct: 401 KFSLQRALESSRALAESLAAENSSLTDNYNQQRSAVNQLKSDMEKLQEEIKVHLVELESV 460

Query: 536 RNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKI 595
           + EY N +LEC+A+DERAKILASEVIGLEEK        + L           S++  ++
Sbjct: 461 KMEYGNAKLECDASDERAKILASEVIGLEEKVFNFF---VML----------FSTFTTQV 507

Query: 596 S-SLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKSIDFGKTAASTVNASTSTEDLAI 654
           S  L      F  T      EKK++QSKLRKAS SGKS+D  + + +  + STSTED   
Sbjct: 508 SLVLCFNNCQFYDT------EKKLLQSKLRKASASGKSLDISQNSGNKKDMSTSTED--- 558

Query: 655 TDTTLDNSNQDTHDDASLPRIDASGSTLLPESGRLALEGLAVNIPHDQMRMIHNINALIS 714
               LD  N++T D  +L   D     + PE+G+  LE   V+IP DQMR+I NIN LIS
Sbjct: 559 ----LDPCNEETVDTTALIGNDIP---IHPENGQSNLEVSTVHIPADQMRLIENINTLIS 611

Query: 715 ELALEKEELVQALSSELAQSSKLK 738
           ELALEKEEL+QALSSE +Q S+LK
Sbjct: 612 ELALEKEELMQALSSESSQCSRLK 635

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297831252|ref|XP_002883508.1| hypothetical protein ARALYDRAFT_898989 [Arabidopsis lyrata subsp. lyrata] gi|297329348|gb|EFH59767.1| hypothetical protein ARALYDRAFT_898989 [Arabidopsis lyrata subsp. lyrata]

 Score =  404 bits (1037), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 232/439 (52%), Positives = 313/439 (71%), Gaps = 20/439 (4%)

Query: 301 KPSNSASGLASLQSTPFKRSEYSGYNFDAGNSFNHVPVSSATNKFTLGKSRASFLDSLNV 360
           KP+ S+S L     T  + SE S ++    N  +  P++SA ++  + +SR SFLDSLN+
Sbjct: 229 KPTLSSSYLFRSPDTSSRPSESSDFSV---NFTSSSPLNSAKSEAIVKRSRPSFLDSLNI 285

Query: 361 PRASSGTLFEQTEPERDSFMSSSS-LNSMDVLGSSPAQNPSMEKETTGAFSKTTTSNIPS 419
            RA   T ++  E + D   SS S L   D  G S     S  +++ G    +  S+ P+
Sbjct: 286 SRAPE-TQYQHPEIKADLVTSSGSQLTGSDGFGPSYI---SGRRDSNGPSLTSGASDSPN 341

Query: 420 AFDYLGNPTVSTSDRGDIRRLGSNESSIENQHGFYSTKHNEDFAALEQHIEDLTQEKFAL 479
            F+   +P    ++             +     F   K N+DF ALEQHIEDLTQEKF+L
Sbjct: 342 PFEKFRSPLYPAAN-----------GVMPGFTDFSMPKQNDDFTALEQHIEDLTQEKFSL 390

Query: 480 QRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEY 539
           QR L+ASRAL+ESLA+ENSS+TD+YNQQR +VNQLK +ME+L ++I+VQ+ ELES R EY
Sbjct: 391 QRDLDASRALAESLASENSSMTDTYNQQRGLVNQLKDDMERLYQQIQVQMGELESVRIEY 450

Query: 540 ANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLE 599
           AN +LECNAADER++ILASEVI LE+KALRLRSNELKLER+LEN+Q+E+ SYKKK+ SLE
Sbjct: 451 ANAQLECNAADERSQILASEVISLEDKALRLRSNELKLERELENAQAEMLSYKKKLQSLE 510

Query: 600 KERQDFQSTIEALQEEKKMMQSKLRKASGSGKSIDFGKTAASTVNASTSTEDLAITDTTL 659
           K+RQD QSTI+ALQEEKK++Q+ ++KAS  GKS D  KT+ S  NASTSTE LAI+DTT 
Sbjct: 511 KDRQDLQSTIKALQEEKKVLQTMVQKASSGGKSTDLSKTSTSRKNASTSTEGLAISDTTP 570

Query: 660 DNSNQDTHDDASLPRIDASGSTLLPESGRLALEGLAVNIPHDQMRMIHNINALISELALE 719
            +SNQ+T D A+L   D+S + ++PE+G+L LEG ++++P DQMR+IHNIN LI+ELA+E
Sbjct: 571 KSSNQET-DSATLLESDSSNTAIIPETGQLTLEGFSLSVPADQMRVIHNINTLIAELAIE 629

Query: 720 KEELVQALSSELAQSSKLK 738
           KEELVQALSSEL++S++++
Sbjct: 630 KEELVQALSSELSRSAQVQ 648

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145338880|ref|NP_189040.3| protein BLISTER [Arabidopsis thaliana] gi|9294667|dbj|BAB03016.1| unnamed protein product [Arabidopsis thaliana] gi|332643320|gb|AEE76841.1| protein BLISTER [Arabidopsis thaliana]

 Score =  400 bits (1029), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 303/742 (40%), Positives = 421/742 (56%), Gaps = 112/742 (15%)

Query: 1   MASAQVLPTSRKQEHLEAGKRKLEEFRKKKAAERAKKASSVSQPQASDFSLHDQHHLEAD 60
           MASA    +SR+QE +EAG+RKLE+FRK+KAAE+AKKAS  +QP            ++  
Sbjct: 1   MASAT---SSRRQEDVEAGRRKLEQFRKRKAAEKAKKASQNTQP------------VDNS 45

Query: 61  RVRVTDLDGAGTS--DGPDKAVVSLPLVMHNDDNKALKLAQQSQQVSLSDKRINSNCFEN 118
           +  V D DGAG S  +GP                  LK + +S       K + +  F N
Sbjct: 46  QQSVIDSDGAGASISNGP------------------LKQSAESTSNETHTKDVYNLSFSN 87

Query: 119 DLNSSSAYLAQTYSNNQETSGSAGPVNVSNSQETKDVNNDFVIYSSGQGRLRDGIMSNQF 178
                 +       + QE   S G V+ SNS E    + D  +              N  
Sbjct: 88  TAMDDGSKERSRQDDGQE---SVGKVDFSNSLELIGSSKDLTV--------------NTR 130

Query: 179 LSLLPEASQDYDSSNSSKSGFQGIEESQSKGNDSFPKVPTLVNSGPSHDFVTKISPQNSV 238
             ++P ++ D  SS                  +SF +  TL                   
Sbjct: 131 PEVVPYSNIDKQSS------------------ESFDRASTL----------------RET 156

Query: 239 STLFQSKPSNAIALGNGHSFHSSSEGTAHLTTSTGGSASEVGLNTPSTTNFSDPVSFNTG 298
           ++LF           +G    SS + +   TT   GS  EV  N   +      +     
Sbjct: 157 ASLFSGTSMQMDGFIHGSGLTSSRKDSLQPTTRMAGSFDEVAKNQQGSGELGGSIV---- 212

Query: 299 EGKPSNSASGLASLQSTPFKRSEYSGYNFDAGNSFNHVPVSSATNKFTLGKSRASFLDSL 358
             KP+ S+S L +   T  + SE S ++ +  +S    P++SA ++ T+ +SR SFLDSL
Sbjct: 213 -QKPTLSSSYLFNSPDTSSRPSEPSDFSVNITSS---SPLNSAKSEATVKRSRPSFLDSL 268

Query: 359 NVPRASSGTLFEQTEPERDSFMSSSS-LNSMDVLGSSPAQNPSMEKETTGAFSKTT-TSN 416
           N+ RA   T ++  E + D   SS S L+  D  G S     S  +++ G  S T+  S+
Sbjct: 269 NISRAPE-TQYQHPEIQADLVTSSGSQLSGSDGFGPSYI---SGRRDSNGPSSLTSGASD 324

Query: 417 IPSAFDYLGNPTVSTSDRGDIRRLGSNESSIENQHGFYSTKHNEDFAALEQHIEDLTQEK 476
            P+ F+   +     ++             +     F   K N+DF ALEQHIEDLTQEK
Sbjct: 325 YPNPFEKFRSSLYPAAN-----------GVMPGFTDFSMPKQNDDFTALEQHIEDLTQEK 373

Query: 477 FALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFR 536
           F+LQR L+ASRAL+ESLA+ENSS+TD+YNQQR +VNQLK +ME+L ++I+ Q+ ELES R
Sbjct: 374 FSLQRDLDASRALAESLASENSSMTDTYNQQRGLVNQLKDDMERLYQQIQAQMGELESVR 433

Query: 537 NEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKIS 596
            EYAN +LECNAADER++ILASEVI LE+KALRLRSNELKLER+LE +Q+E+ SYKKK+ 
Sbjct: 434 VEYANAQLECNAADERSQILASEVISLEDKALRLRSNELKLERELEKAQTEMLSYKKKLQ 493

Query: 597 SLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKSIDFGKTAASTVNASTSTEDLAITD 656
           SLEK+RQD QSTI+ALQEEKK++Q+ ++KAS  GKS D  K + S  N STSTE LAI+D
Sbjct: 494 SLEKDRQDLQSTIKALQEEKKVLQTMVQKASSGGKSTDLSKNSTSRKNVSTSTEGLAISD 553

Query: 657 TTLDNSNQDTHDDASLPRIDASGSTLLPESGRLALEGLAVNIPHDQMRMIHNINALISEL 716
           TT ++SNQ+T D  +L   D+S + ++PE+ +L LEG ++++P DQMR+IHNIN LI+EL
Sbjct: 554 TTPESSNQET-DSTTLLESDSSNTAIIPETRQLTLEGFSLSVPADQMRVIHNINTLIAEL 612

Query: 717 ALEKEELVQALSSELAQSSKLK 738
           A+EKEELVQALSSEL++S+ ++
Sbjct: 613 AIEKEELVQALSSELSRSAHVQ 634

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458920|ref|XP_004147194.1| PREDICTED: uncharacterized protein LOC101216257 [Cucumis sativus]

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 269/626 (42%), Positives = 367/626 (58%), Gaps = 56/626 (8%)

Query: 1   MASAQVLPTS----RKQEHLEAGKRKLEEFRKKKAAERAKKASSVSQPQASDFSLHDQHH 56
           MASAQVLP S    RK EHLEAGKR+LEEFRKKKAAER KKA+  SQ   SD    ++  
Sbjct: 1   MASAQVLPNSMASTRKLEHLEAGKRRLEEFRKKKAAERVKKAAPPSQNHVSDAGSEEKKP 60

Query: 57  LEADRV-RVTDLDGAGTSDGPDKAVVSLPLVMHNDDNKALKLAQQSQQVSLSDKRINSNC 115
           LE++   R+TD DGA T++G  ++ +     +  DD  A   +Q   Q +L++K  +   
Sbjct: 61  LESEHAQRITDSDGATTTNGAGRSAIESSSALVKDDRHADDFSQNINQNALNEKHASYPF 120

Query: 116 FENDLNSSSAYLAQTYSNNQETS---GSA--GPVNVSNSQETKDVNNDFVIYSSGQGRLR 170
             N     S    +  SN QE +   GS   GP +V++  E  ++N D  + +  Q R  
Sbjct: 121 SRNTDGVFSTDPVKQPSNGQEINTFNGSRLFGPTDVNSRNEILEINKDSELINGPQAR-- 178

Query: 171 DGIMSNQFLSLLPEASQDYDS--SNSSKSGFQGIEESQSKGNDSFPKVPTLVNSGPSHDF 228
             I       + P+AS+  DS  S S+  G  G+   +    +S      L +SG  H F
Sbjct: 179 --ISFQSAFGINPQASEGTDSIISQSAHHGVDGLLFRRDSQENSM-----LKSSGSLHKF 231

Query: 229 VTKISPQNSVSTLFQSKPSNAIALGNGHSFHSSSEGTAHLTTSTGGSASEVGLNTPSTTN 288
              IS QN+V+ L  +  S+   L +G+SF SS +G  + +T  G ++ EVG        
Sbjct: 232 SANISLQNTVANLQDTDSSSNNNLASGNSFQSSYDGLFNNSTRKGYNSHEVG-------- 283

Query: 289 FSDPVSFNTGEGKPSNSASGLASLQSTPFKRSEYSGYNFDAGNSFNHVPVSSATNKFTLG 348
             + +  N  +GKP +  +    ++    + SE +G + D     N+ P  +A+++ +  
Sbjct: 284 --ESMHRNFEQGKPID-VTDFTRIKPESVQSSEPTGLDADIRLPSNYEPPYTASSENSFR 340

Query: 349 KSRASFLDSLNVPRASSGTLFEQTEPERD---------------SFMSSSSLNS------ 387
           +SR SFLDSL+VP+ASSG+     E +++               SF   +S+ S      
Sbjct: 341 RSRPSFLDSLSVPKASSGSFLGHGERDKEPGLSDGFKFNKDGPASFSFQNSIKSDGFRTD 400

Query: 388 -MDVLGSSPAQNPSMEKETTGAFSKTTTSNIPSAFDYLGNPTVSTSDRGDIRRLGSNESS 446
             D   S   Q P M+ +T G  S  T+ N P ++     P+V       I  +G  +++
Sbjct: 401 ERDGSESLTLQKPLMDVKTLGTPSHFTSQNTPVSYSNSFPPSVFPVKDQPI--IGIEDNT 458

Query: 447 IENQHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQ 506
           +E +H  YS+K NEDFAALEQHIEDLTQEKF+LQR+L+ASR L+ESLAAENSSLTDSYN+
Sbjct: 459 MERKHELYSSKQNEDFAALEQHIEDLTQEKFSLQRALDASRTLAESLAAENSSLTDSYNK 518

Query: 507 QRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEK 566
           QRSVVNQLKS+ME LQEE+K Q+VELES + EYAN +LECNAADERAK++ASEVIGLEEK
Sbjct: 519 QRSVVNQLKSDMEMLQEEMKTQMVELESIKLEYANAQLECNAADERAKLIASEVIGLEEK 578

Query: 567 ALRLRSNELKLERQLENSQSEISSYK 592
           ALRLRSNELKLERQLEN ++EISSYK
Sbjct: 579 ALRLRSNELKLERQLENKEAEISSYK 604

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356577582|ref|XP_003556903.1| PREDICTED: uncharacterized protein LOC100811137 [Glycine max]

 Score =  345 bits (886), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 253/626 (40%), Positives = 345/626 (55%), Gaps = 97/626 (15%)

Query: 1   MASAQVLP----TSRKQEHLEAGKRK---------------------------------- 22
           MASAQVLP    +SRKQEHLEAGKR+                                  
Sbjct: 1   MASAQVLPNTAASSRKQEHLEAGKRRGGKWKEIVKMIGGELKGRGLCNLQLRIACQSVVT 60

Query: 23  -------------LEEFRKKKAAERAKKASSVSQPQASDFSLHDQHHLEADRVRVTDLDG 69
                        LEEFRKKKAAER KKA+S  Q   SD SL+ +   E + VRV + DG
Sbjct: 61  VEGLGLIGGSCSQLEEFRKKKAAERTKKAASSGQVHNSDASLNKKQSSEVENVRVNESDG 120

Query: 70  AGTSDGPDKAVVSL-PLVMHNDDNKALKLAQQSQQVSLSDKRINSNCFENDLNSSSAYLA 128
             TSDG   +V     L M ND N  L ++Q S Q SL+          NDLN  S  L 
Sbjct: 121 VSTSDGVGGSVTGTSTLGMRNDKNLNL-ISQSSNQGSLAGSTF---LARNDLNMLSTSLG 176

Query: 129 QTYSNNQET-----SGSAGPVNVSNSQETKDVNNDFVIYSSGQGRLRDGIMSNQFLSLLP 183
           + +SN  E      S      + S + ET  VN+   I++ G   +     ++Q + L  
Sbjct: 177 EAHSNIDECKRYNASSVTTSADFSQNNETNKVNDIHGIHAVGVDGIPYATTNHQSVPLRS 236

Query: 184 EASQDYDSSNSSKSGFQGIEESQSKGNDSFPKVPTLVNSGPSHDFVTKISPQNSVSTLFQ 243
           + SQ++DS N S+S   G+ ++QS  ++S  K   + ++  S+ F +KI+PQNSV T  Q
Sbjct: 237 QESQEFDS-NPSQSSLHGVNDNQSNKSNSSLKDYAVTDNFSSY-FPSKITPQNSVDTPLQ 294

Query: 244 SKPSNAIALGNGHSFHSSSEGTAHLTTSTGGSASEVGLNTPSTTNFSDPVSFNTGEGKPS 303
            KP N+    +G+S                 S    G +   ++ F + ++         
Sbjct: 295 IKPMNSSTFDSGYSH----------------SLLSGGFSDSFSSKFRETIT--------- 329

Query: 304 NSASGLASLQSTPFKRSEYSGYNFDAGNSFNHVPVSSATNKFTLGKSRASFLDSLNVPRA 363
           +S + L SL      + + +GY  +A NS NH P+ S   + +  +SR SFLDSLNV R 
Sbjct: 330 SSDNNLPSLHGATMLKYDSTGY--EARNSSNHTPIHSLPTESSSQRSRPSFLDSLNVTRP 387

Query: 364 SSGTLFEQTEPERDSFMSS---SSLNSMDVLGSSPAQNPSMEKETTGAFSKTTTSNIPSA 420
           S G+ F Q+E  +DS MS+   SS N +   GS+    PS E ++   FS  TT+N+ S+
Sbjct: 388 SLGSPFHQSE--QDSSMSNHLESSSNGIS--GSTYFHKPSEETKSMPLFSNFTTANVHSS 443

Query: 421 FDYLGNPTVSTSDRGDIRRLGSNESSIENQHGFYSTKHNEDFAALEQHIEDLTQEKFALQ 480
            + L  P+V  +D        + E+ +E QH +YS+  NEDF+ALEQHIEDLT+EKF+L+
Sbjct: 444 LEQLTTPSVVDNDNQGALMTSTRENGMEKQHDYYSSSQNEDFSALEQHIEDLTKEKFSLR 503

Query: 481 RSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYA 540
           R+LEASR L+ESLA ENS+LTD+YNQQRSVV+QLKS+ME LQE+IK +LVE E+ ++EY 
Sbjct: 504 RALEASRTLAESLATENSTLTDNYNQQRSVVDQLKSDMENLQEDIKARLVEFEAIKSEYT 563

Query: 541 NVRLECNAADERAKILASEVIGLEEK 566
           N +LECNAADERAK+LASEVIGLEEK
Sbjct: 564 NAQLECNAADERAKLLASEVIGLEEK 589

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125528809|gb|EAY76923.1| hypothetical protein OsI_04881 [Oryza sativa Indica Group]

 Score =  294 bits (753), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 209/466 (44%), Positives = 280/466 (60%), Gaps = 60/466 (12%)

Query: 301 KPSNSASGLASLQSTPFKRSEYSGYNFDAGNSFNHVPVS--------SATNKFTLGKSRA 352
           K S+ A GLA   S    R   S +N ++ N+ N  PV         S+    T  +SR 
Sbjct: 250 KDSSQADGLAYASS----REYGSAFN-NSWNTSNSTPVCFDKQDPFMSSGYPTTYNRSRP 304

Query: 353 SFLDSLNVPRASSGTLFEQTEPERDS--FMSSSSLNSM------------DVLGS--SPA 396
           SFLDS+ V RA + T     EP + S  F +S+S +S             DV GS  S  
Sbjct: 305 SFLDSIGVQRAPT-TEVPYVEPAKASKPFGNSNSESSFFQPPNQQSAGSNDVDGSLKSGR 363

Query: 397 QNPSMEKETTGAFSKTTTSNIPSAFDYLGNPTVSTSDRGDIRRLGSNESSIENQHGFYST 456
           Q  + EK + G  +   T + PS                D R L  +    +N   F   
Sbjct: 364 QEYNNEKGSYG--NSIRTDSFPSK---------------DERNLHHSTQMFQN---FTIP 403

Query: 457 KHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKS 516
             ++DFAALEQ IEDLT+EKFALQR+LE S+ L+++LA +NS+LTD +NQQ  V++ L S
Sbjct: 404 GKDDDFAALEQLIEDLTKEKFALQRTLEKSQELAQTLATDNSALTDKFNQQAQVISNLTS 463

Query: 517 EMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELK 576
           +ME+LQ EI+ QL+ LES R EYAN +LECNAADERAK+LA+EVI LE+KALRLRS+ELK
Sbjct: 464 DMERLQNEIQAQLLALESVRTEYANAQLECNAADERAKVLAAEVILLEDKALRLRSSELK 523

Query: 577 LERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKSIDFG 636
           LE+++E   SEISSY++K+SSLEKERQ  QST+EALQEEKK++ SKLR  S + K     
Sbjct: 524 LEKEIEGLSSEISSYRRKVSSLEKERQHLQSTVEALQEEKKLLHSKLRNTSVTEKVNIIE 583

Query: 637 KTAASTVNASTSTEDLAITDTTLDNSNQDTHDDASLPRIDASGSTLLPESGRLA----LE 692
           K +A   +AST+TEDL   +++   +     D          G T +  S  +A    LE
Sbjct: 584 KPSADKRDASTATEDLDTGESSSSETLTSAIDTVE------DGETSVSRSNNVADFTYLE 637

Query: 693 GLAVNIPHDQMRMIHNINALISELALEKEELVQALSSELAQSSKLK 738
            ++ +IPHDQ+RMI NIN+L+SELA+E+EEL++AL  E +  SKLK
Sbjct: 638 EVSSSIPHDQLRMIDNINSLMSELAVEREELLRALRIESSNCSKLK 683

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115441767|ref|NP_001045163.1| Os01g0911800 [Oryza sativa Japonica Group] gi|20161363|dbj|BAB90287.1| heavy meromyosin-like [Oryza sativa Japonica Group] gi|113534694|dbj|BAF07077.1| Os01g0911800 [Oryza sativa Japonica Group] gi|125573067|gb|EAZ14582.1| hypothetical protein OsJ_04505 [Oryza sativa Japonica Group]

 Score =  294 bits (752), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 209/466 (44%), Positives = 280/466 (60%), Gaps = 60/466 (12%)

Query: 301 KPSNSASGLASLQSTPFKRSEYSGYNFDAGNSFNHVPVS--------SATNKFTLGKSRA 352
           K S+ A GLA   S    R   S +N ++ N+ N  PV         S+    T  +SR 
Sbjct: 250 KDSSQADGLAYASS----REYGSAFN-NSWNTSNSTPVCFDKQDPFMSSGYPTTYNRSRP 304

Query: 353 SFLDSLNVPRASSGTLFEQTEPERDS--FMSSSSLNSM------------DVLGS--SPA 396
           SFLDS+ V RA + T     EP + S  F +S+S +S             DV GS  S  
Sbjct: 305 SFLDSIGVQRAPT-TEVPYVEPAKASKPFGNSNSESSFFQPPNQQSAGSNDVDGSLKSGR 363

Query: 397 QNPSMEKETTGAFSKTTTSNIPSAFDYLGNPTVSTSDRGDIRRLGSNESSIENQHGFYST 456
           Q  + EK + G  +   T + PS                D R L  +    +N   F   
Sbjct: 364 QEYNNEKGSYG--NSIRTDSFPSK---------------DERNLHHSTQMFQN---FTIP 403

Query: 457 KHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKS 516
             ++DFAALEQ IEDLT+EKFALQR+LE S+ L+++LA +NS+LTD +NQQ  V++ L S
Sbjct: 404 GKDDDFAALEQLIEDLTKEKFALQRTLEKSQELAQTLATDNSALTDKFNQQAQVISNLTS 463

Query: 517 EMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELK 576
           +ME+LQ EI+ QL+ LES R EYAN +LECNAADERAK+LA+EVI LE+KALRLRS+ELK
Sbjct: 464 DMERLQNEIQAQLLALESVRTEYANAQLECNAADERAKVLAAEVILLEDKALRLRSSELK 523

Query: 577 LERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKSIDFG 636
           LE+++E   SEISSY++K+SSLEKERQ  QST+EALQEEKK++ SKLR  S + K     
Sbjct: 524 LEKEIEGLSSEISSYRRKVSSLEKERQHLQSTVEALQEEKKLLHSKLRNTSVTEKVNIIE 583

Query: 637 KTAASTVNASTSTEDLAITDTTLDNSNQDTHDDASLPRIDASGSTLLPESGRLA----LE 692
           K +A   +AST+TEDL   +++   +     D          G T +  S  +A    LE
Sbjct: 584 KPSADKRDASTATEDLDTGESSSSETLTSAIDTVE------DGETSVSRSNNVADFTYLE 637

Query: 693 GLAVNIPHDQMRMIHNINALISELALEKEELVQALSSELAQSSKLK 738
            ++ +IPHDQ+RMI NIN+L+SELA+E+EEL++AL  E +  SKLK
Sbjct: 638 EVSSSIPHDQLRMIDNINSLMSELAVEREELLRALRIESSNCSKLK 683

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|414879058|tpg|DAA56189.1| TPA: hypothetical protein ZEAMMB73_308793 [Zea mays] gi|414879059|tpg|DAA56190.1| TPA: hypothetical protein ZEAMMB73_308793 [Zea mays] gi|414879060|tpg|DAA56191.1| TPA: hypothetical protein ZEAMMB73_308793 [Zea mays]

 Score =  293 bits (750), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 196/440 (44%), Positives = 267/440 (60%), Gaps = 61/440 (13%)

Query: 324 GYNFDAGNSFNHVPVSSATNKFTLGKSRASFLDSLNVPRASSGTLFEQTEPER------- 376
           G NF+  +     P  S+    T  +SR SFLDS+ V R    T     EP +       
Sbjct: 268 GVNFERQD-----PFLSSGYPTTYTRSRPSFLDSIGVQRVPPTTQASYREPAKANQLSHN 322

Query: 377 ----DSFMSSS-----SLNSMDVLGSSPAQNPSMEKETTGAFSKTTTSNIPSAFDYLGNP 427
                SF+  S     S N+ D+  +S +Q  S EK + G      +SN P   D+    
Sbjct: 323 SNYQSSFVKQSNQQPTSSNAADISFASESQEYSHEKGSYG------SSNHP---DF---- 369

Query: 428 TVSTSDRGDIRRLGSNESSIENQHG------FYSTKHNEDFAALEQHIEDLTQEKFALQR 481
                       L   E SI  QHG      F +   ++DFA LEQ IEDLT+EKF+LQR
Sbjct: 370 -----------SLPKEERSI--QHGKQTFQNFATHGKDDDFATLEQLIEDLTKEKFSLQR 416

Query: 482 SLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYAN 541
           SL+ S+ L+E+LA +NS+LTD +NQQ  V++QL S+ME+LQEEI+ QL+ LES R EYAN
Sbjct: 417 SLQKSQELAETLATDNSALTDKFNQQAHVISQLTSDMERLQEEIQAQLLALESVRTEYAN 476

Query: 542 VRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKE 601
            +LEC+AADERAK+LA+EVI LE+KALRLRS+ELKLE+++E   SEIS+Y++K+SSLEKE
Sbjct: 477 AQLECSAADERAKVLAAEVILLEDKALRLRSSELKLEKEVEGLHSEISAYRRKVSSLEKE 536

Query: 602 RQDFQSTIEALQEEKKMMQSKLRKASGSGKSIDFGKTAASTVNASTSTEDL---AITDTT 658
           RQ  QST+EALQEEKK++ SKLR    + ++    K +    +AST TEDL    I+ + 
Sbjct: 537 RQHLQSTVEALQEEKKLLYSKLRNIPVNERATTVEKPSVDKKDASTVTEDLDTGEISSSE 596

Query: 659 LDNSNQDTHDDASLPRIDASGSTLLPESGRLALEGLAVNIPHDQMRMIHNINALISELAL 718
              S  D  +DA    + ++  +  P S     E ++ +IP DQ+RMI NIN+L+SELA+
Sbjct: 597 TLTSTVDILEDAGTSVLRSNIVSDFPSS-----EQVSSSIPDDQLRMIDNINSLMSELAV 651

Query: 719 EKEELVQALSSELAQSSKLK 738
           E+EEL++AL  E +  SKLK
Sbjct: 652 EREELLRALRIESSNCSKLK 671

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	739
TAIR|locus:2076071	714	BLI "BLISTER" [Arabidopsis tha	0.675	0.698	0.395	9.3e-84
DICTYBASE|DDB_G0271670	374	DDB_G0271670 [Dictyostelium di	0.437	0.863	0.172	5.7e-06
ZFIN|ZDB-GENE-080618-2	538	prdm1b "PR domain containing 1	0.457	0.628	0.212	0.00022
POMBASE|SPBC215.13	534	SPBC215.13 "sequence orphan" [	0.369	0.511	0.226	0.00028
CGD|CAL0006203	768	orf19.4906 [Candida albicans (	0.327	0.315	0.247	0.00073
UNIPROTKB|Q5APQ2	768	CaO19.4906 "Putative uncharact	0.327	0.315	0.247	0.00073

TAIR|locus:2076071 BLI "BLISTER" [Arabidopsis thaliana (taxid:3702)]

 Score = 809 (289.8 bits), Expect = 9.3e-84, Sum P(2) = 9.3e-84
 Identities = 209/528 (39%), Positives = 293/528 (55%)

Query:   220 VNSGPSHDFVTKISPQNSVSTLFQSKPSNAIALGNGHSFHSSSEGTAHLTTSTGGSASEV 279
             VN+ P     + I  Q+S S    S      +L +G S     +G  H +  T      +
Sbjct:   127 VNTRPEVVPYSNIDKQSSESFDRASTLRETASLFSGTSMQM--DGFIHGSGLTSSRKDSL 184

Query:   280 GLNTPSTTNFSDPVSFNTGEG--------KPSNSASGLASLQSTPFKRSEYSGYNFDAGN 331
                T    +F +      G G        KP+ S+S L +   T  + SE S ++ +  +
Sbjct:   185 QPTTRMAGSFDEVAKNQQGSGELGGSIVQKPTLSSSYLFNSPDTSSRPSEPSDFSVNITS 244

Query:   332 SFNHVPVSSATNKFTLGKSRASFLDSLNVPRASSGTLFEQTEPERXXXXXXXXXXXXXXX 391
             S    P++SA ++ T+ +SR SFLDSLN+ RA   T ++   PE                
Sbjct:   245 SS---PLNSAKSEATVKRSRPSFLDSLNISRAPE-TQYQH--PEIQADLVTSSGSQLSGS 298

Query:   392 XXXPAQNPSMEKETTGAFSKTT-TSNIPSAFDYLGNPTVSTSDRGDIRRLGSNESSIENQ 450
                     S  +++ G  S T+  S+ P+ F+   +     ++ G +   G  + S+  Q
Sbjct:   299 DGFGPSYISGRRDSNGPSSLTSGASDYPNPFEKFRSSLYPAAN-GVMP--GFTDFSMPKQ 355

Query:   451 HGFYSTKHNEDFAALEQHIEDLTQEKFALQXXXXXXXXXXXXXXXXXXXXTDSYNQQRSV 510
                     N+DF ALEQHIEDLTQEKF+LQ                    TD+YNQQR +
Sbjct:   356 --------NDDFTALEQHIEDLTQEKFSLQRDLDASRALAESLASENSSMTDTYNQQRGL 407

Query:   511 VNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRL 570
             VNQLK +ME+L ++I+ Q+ ELES R EYAN +LECNAADER++ILASEVI LE+KALRL
Sbjct:   408 VNQLKDDMERLYQQIQAQMGELESVRVEYANAQLECNAADERSQILASEVISLEDKALRL 467

Query:   571 RSNELKLERQLENXXXXXXXXXXXXXXXXXXRQDFQSTIEALQEEKKMMQSKLRKASGSG 630
             RSNELKLER+LE                   RQD QSTI+ALQEEKK++Q+ ++KAS  G
Sbjct:   468 RSNELKLERELEKAQTEMLSYKKKLQSLEKDRQDLQSTIKALQEEKKVLQTMVQKASSGG 527

Query:   631 KSIDFGKXXXXXXXXXXXXEDLAITDTTLDNSNQDTHDDASLPRIDASGSTLLPESGRLA 690
             KS D  K            E LAI+DTT ++SNQ+T D  +L   D+S + ++PE+ +L 
Sbjct:   528 KSTDLSKNSTSRKNVSTSTEGLAISDTTPESSNQET-DSTTLLESDSSNTAIIPETRQLT 586

Query:   691 LEGLAVNIPHDQMRMIHNINALISELALEKEELVQALSSELAQSSKLK 738
             LEG ++++P DQMR+IHNIN LI+ELA+EKEELVQALSSEL++S+ ++
Sbjct:   587 LEGFSLSVPADQMRVIHNINTLIAELAIEKEELVQALSSELSRSAHVQ 634

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0005634 "nucleus" evidence=IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IMP

GO:0009908 "flower development" evidence=IMP

GO:0009965 "leaf morphogenesis" evidence=IGI

GO:0010091 "trichome branching" evidence=IMP

GO:0048316 "seed development" evidence=IMP

GO:0048826 "cotyledon morphogenesis" evidence=IMP

GO:0051781 "positive regulation of cell division" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

DICTYBASE|DDB_G0271670 DDB_G0271670 [Dictyostelium discoideum (taxid:44689)]

 Score = 137 (53.3 bits), Expect = 5.7e-06, P = 5.7e-06
 Identities = 56/325 (17%), Positives = 128/325 (39%)

Query:    96 KLAQQSQQVSLSDKRINSNCFENDLNSSSAYLAQTYSNNQETSGSAGPVNVSNSQETKDV 155
             +L + ++   + D  + S  F N L++SS+  + + S++  +S S+   + S+S  +   
Sbjct:    41 QLEKTNKMAEVGDLGVAS--FLNILDTSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 98

Query:   156 NNDFVIYSSGQGRLRDGIMSNQFLSLLPEAXXXXXXXXXXXXGFQGIEESQSKGNDSFPK 215
             ++     SS          S+   S    +                   S S  + S   
Sbjct:    99 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 158

Query:   216 VPTLVNSGPSHDFVTKISPQNSVSTLFQSKPSNAIALGNGHSFHSSSEGTAHLTTSTGGS 275
               +  +S  S    +  S  +S S+   S  S++ +  +  S  SSS  ++  ++S+  S
Sbjct:   159 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 218

Query:   276 ASEVGLNTPSTTNFSDPVSFNTGEGKPSNSASGLASLQSTPFKRSEYSGYNFDAGNSFNH 335
             +S    ++ S+++ S   S ++     S+S+S  +S  S+    S  S  +  + +S + 
Sbjct:   219 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 278

Query:   336 VPVSSATNKFTLGKSRASFLDSLNVPRASSGTLFEQTEPERXXXXXXXXXXXXXXXXXXP 395
                SS+++  +   S +S   S +   +SS +    +                       
Sbjct:   279 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 338

Query:   396 AQNPSMEKETTGAFSKTTTSNIPSA 420
             + + S    ++ + S +++S+  S+
Sbjct:   339 SSSSSSSSSSSSSSSSSSSSSSSSS 363

GO:0005576 "extracellular region" evidence=IEA

ZFIN|ZDB-GENE-080618-2 prdm1b "PR domain containing 1b, with ZNF domain" [Danio rerio (taxid:7955)]

 Score = 125 (49.1 bits), Expect = 0.00022, P = 0.00022
 Identities = 78/367 (21%), Positives = 140/367 (38%)

Query:    10 SRKQEHLEAGXXXXXXXXXXXXXXXXXXXSSVSQPQASDFSLHDQHHLEADRVRVTDLDG 69
             S+K+ HLE G                   S +S+P+++D S+H+   L   +  V  +  
Sbjct:     2 SQKRSHLEHGEYSNAASLTQE--------SYISRPESTDSSIHESSSLFIPKSPVFSIPE 53

Query:    70 AGTSDGPDKAVVSLPLVMHNDDNKALKLAQQSQQVSLSDKRINSNCFENDLNSSSAYLAQ 129
             +  S  P     S+P V  + D + L  +   +    S  +I+++      ++S   ++ 
Sbjct:    54 SSFSSDPQNPTASIPQVSSSSDPQ-LSTSSIPESSFSSGPQISTSSIPQSTSTSVPQIS- 111

Query:   130 TYSNNQETSGSAGPVNVSNSQETKDVNNDFVIYSS--GQGRLRDGIMSNQFLSLLPEAXX 187
             T S  Q  S S   ++ S+  ++  V+   +  SS        D  +S    SL+PE   
Sbjct:   112 TSSIPQSASTSVSQISTSSVPDSSSVSVPQIFISSVPQSSSSSDPQIST---SLIPEFSS 168

Query:   188 XXXXXXXXXXGFQGIEESQSK-GNDSFPK-----VPTLVNSGPSHDFVTKISPQNSVSTL 241
                         Q    S  +    S P+     VP +  S       T + PQ S S++
Sbjct:   169 SSDPQIFTSSILQSTSTSVPQISTSSIPQSSSSSVPQISTSSIHQSSPTSV-PQMSTSSI 227

Query:   242 FQSKPSNAIALGNGHSFHSSSEGTAHLTTSTGGSASEVGLNTPSTTNFSDPVSFNTGEGK 301
              Q   S+   +       SSS     ++TS+   +S   +   ST++     S +  +  
Sbjct:   228 PQGSSSSVPQISTSSIPQSSSSSVPQISTSSIPQSSPTSVPQISTSSIPQGSSSSVPQIS 287

Query:   302 PSN---SASGLASLQSTPFKRSEYSGYNFDAGNSFNHVPVSSATNKFTLGKSRASFLDS- 357
              S+   S++      STP      S Y   +  S  H    S  +  T+ +S ++  +S 
Sbjct:   288 ISSIPQSSTNSVPHSSTPLVHESSSSYIPQSSTSTMH---DSFNSDSTMTQSFSTNTNSA 344

Query:   358 LNVPRAS 364
              N+P  S
Sbjct:   345 FNLPEDS 351

GO:0005737 "cytoplasm" evidence=IEA

GO:0018149 "peptide cross-linking" evidence=IEA

POMBASE|SPBC215.13 SPBC215.13 "sequence orphan" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 124 (48.7 bits), Expect = 0.00028, P = 0.00028
 Identities = 64/283 (22%), Positives = 119/283 (42%)

Query:    94 ALKLAQQSQQVSLSDKRINSNCFENDLNSSSAYLAQT--YSNNQETSGSAGPVNVSNSQE 151
             +L  +  S Q S+S    ++       ++SS+YL+ +   S++   S S+     S+S  
Sbjct:   177 SLSSSTSSSQPSVSSTSSSTFSSAAPTSTSSSYLSSSSVVSSSSSPSSSSSSTLTSSSLS 236

Query:   152 TKDVNNDFVIYSSGQGRLRDGIMSNQFLSLLPEAXXXXXXXXXXXXGFQGIEE-SQSKGN 210
             T  + +     SS    L     S+   S    +                    S S  +
Sbjct:   237 TSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTISSSSSS 296

Query:   211 DSFPKVPTLV---NSGPSHDFVTKISPQN-SVSTLFQSKP-SNAIALGNGHSFHSSSEGT 265
              S P   +     +S  S  F + +S  + S S+ F S P S++  + +  S  SSS  +
Sbjct:   297 SSSPTSTSSTISSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSSSSTISSSSSSPSSSSFS 356

Query:   266 AHLTTSTGGSASEVGLNTPSTTNFSDPVSFNTGEGKPSNSASGLASLQSTPFKRSEYSGY 325
             +  ++S   S+    +++ S+T+ S   S ++   +P++S+S  +SL S     S  S  
Sbjct:   357 STTSSSKSSSSFSSTVSSSSSTSSSTLTSSSSSSSRPASSSSHSSSLSSHKSSSSSKSS- 415

Query:   326 NFDAGNSFNHVPVSSATNKFTLGKSRASFLDSLNVPRASSGTL 368
             +    ++F H   SS ++  +   S +S L S  +  ASS +L
Sbjct:   416 SAPVSSAFYHNSTSSRSSSHSSSHSLSS-LSSKPILTASSSSL 457

GO:0003674 "molecular_function" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005886 "plasma membrane" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0009986 "cell surface" evidence=NAS

GO:0031225 "anchored to membrane" evidence=IEA

CGD|CAL0006203 orf19.4906 [Candida albicans (taxid:5476)]

 Score = 130 (50.8 bits), Expect = 0.00073, Sum P(2) = 0.00073
 Identities = 64/259 (24%), Positives = 105/259 (40%)

Query:   200 QGIEESQ-SKGNDSFPKVPTLVNSGPSHDFVTKISPQNSVSTLFQSKPSNAIALGNGHSF 258
             Q  ++SQ S+   S  + P+   S  +  FV+      SVS    S  S +       S 
Sbjct:   134 QQSQQSQPSQSPTSTSQAPSSTMSDNNTSFVSPSDTSLSVSATTTSSSSTS------SSS 187

Query:   259 HSSSEGTAHLTTSTGGSASEVGL-NTPSTTNFSDPVSFNTGEGKPSNSASGLASLQSTPF 317
              SS+  T+ +TTS+  S+S     ++ S+T FS   +  T     S+S++  +S+ ST  
Sbjct:   188 SSSTPSTSDVTTSSSASSSPSSTTSSSSSTAFSSSTT-ETSSSATSSSSTTSSSISSTQS 246

Query:   318 KRSEYSGYNFDAGNSFNHVPVSSATNKFTLGKSRASFLDSLNVPRASSGTLFEQTEPERX 377
               S  S  +F +  + +    SS ++ F+   S +S   S ++   SS   F  T     
Sbjct:   247 NTSSSSNTSFSSSTTASSSFSSSTSSSFS--PSPSSTTSSSSISSTSSS--F--TTSSDT 300

Query:   378 XXXXXXXXXXXXXXXXXPAQNPSMEKETTGAFSKTTTSNIPSAFDYLGNPTVSTSDRGDI 437
                               + N S    ++   S +TTS+IPS+ +     T ++S   D 
Sbjct:   301 SASSSSSSSVSPSSTTSSSSNFSSSSSSSTITSSSTTSSIPSSSEVSSTSTSASSSSSDS 360

Query:   438 RRLGSNESSIENQHGFYST 456
                 S  SS E      ST
Sbjct:   361 ST--STSSSSETDQSSSST 377

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0000082 "G1/S transition of mitotic cell cycle" evidence=IEA

GO:0051726 "regulation of cell cycle" evidence=IEA

GO:0010628 "positive regulation of gene expression" evidence=IEA

UNIPROTKB|Q5APQ2 CaO19.4906 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)]

 Score = 130 (50.8 bits), Expect = 0.00073, Sum P(2) = 0.00073
 Identities = 64/259 (24%), Positives = 105/259 (40%)

Query:   200 QGIEESQ-SKGNDSFPKVPTLVNSGPSHDFVTKISPQNSVSTLFQSKPSNAIALGNGHSF 258
             Q  ++SQ S+   S  + P+   S  +  FV+      SVS    S  S +       S 
Sbjct:   134 QQSQQSQPSQSPTSTSQAPSSTMSDNNTSFVSPSDTSLSVSATTTSSSSTS------SSS 187

Query:   259 HSSSEGTAHLTTSTGGSASEVGL-NTPSTTNFSDPVSFNTGEGKPSNSASGLASLQSTPF 317
              SS+  T+ +TTS+  S+S     ++ S+T FS   +  T     S+S++  +S+ ST  
Sbjct:   188 SSSTPSTSDVTTSSSASSSPSSTTSSSSSTAFSSSTT-ETSSSATSSSSTTSSSISSTQS 246

Query:   318 KRSEYSGYNFDAGNSFNHVPVSSATNKFTLGKSRASFLDSLNVPRASSGTLFEQTEPERX 377
               S  S  +F +  + +    SS ++ F+   S +S   S ++   SS   F  T     
Sbjct:   247 NTSSSSNTSFSSSTTASSSFSSSTSSSFS--PSPSSTTSSSSISSTSSS--F--TTSSDT 300

Query:   378 XXXXXXXXXXXXXXXXXPAQNPSMEKETTGAFSKTTTSNIPSAFDYLGNPTVSTSDRGDI 437
                               + N S    ++   S +TTS+IPS+ +     T ++S   D 
Sbjct:   301 SASSSSSSSVSPSSTTSSSSNFSSSSSSSTITSSSTTSSIPSSSEVSSTSTSASSSSSDS 360

Query:   438 RRLGSNESSIENQHGFYST 456
                 S  SS E      ST
Sbjct:   361 ST--STSSSSETDQSSSST 377

GO:0003674 "molecular_function" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00020407001 SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (451 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	739
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	6e-11
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-10
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	8e-10
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-09
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	4e-09
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-08
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-08
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-08
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-08
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	3e-08
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	3e-08
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	4e-08
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	6e-08
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	7e-08
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	8e-08
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-07
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	4e-07
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	4e-07
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	4e-07
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	4e-07
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	4e-07
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	6e-07
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	8e-07
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-06
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	2e-06
pfam09726	680	pfam09726, Macoilin, Transmembrane protein	5e-06
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	7e-06
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	8e-06
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	9e-06
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-05
COG1579	239	COG1579, COG1579, Zn-ribbon protein, possibly nucl	2e-05
COG2433	652	COG2433, COG2433, Uncharacterized conserved protei	2e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-05
TIGR01843	423	TIGR01843, type_I_hlyD, type I secretion membrane	3e-05
pfam13863	126	pfam13863, DUF4200, Domain of unknown function (DU	5e-05
PRK04863	1486	PRK04863, mukB, cell division protein MukB; Provis	7e-05
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	8e-05
COG3096	1480	COG3096, MukB, Uncharacterized protein involved in	1e-04
pfam04156	186	pfam04156, IncA, IncA protein	1e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	3e-04
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	3e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	4e-04
pfam00769	244	pfam00769, ERM, Ezrin/radixin/moesin family	5e-04
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	8e-04
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	8e-04
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	0.001
pfam13166	713	pfam13166, AAA_13, AAA domain	0.001
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.002
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.002
COG4717	984	COG4717, COG4717, Uncharacterized conserved protei	0.002
PRK00409	782	PRK00409, PRK00409, recombination and DNA strand e	0.002
pfam03962	188	pfam03962, Mnd1, Mnd1 family	0.004

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 65.9 bits (161), Expect = 6e-11
 Identities = 48/196 (24%), Positives = 93/196 (47%), Gaps = 3/196 (1%)

Query: 434 RGDIRRLGSNESSIENQHGFYSTKHNEDFAALEQ---HIEDLTQEKFALQRSLEASRALS 490
              +  L      +E Q      +       LEQ    +E+L +E   L+  LE  +   
Sbjct: 701 EDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERL 760

Query: 491 ESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAAD 550
           E L  E  SL ++  + +  + +L+ + + LQEE++    ELE        +  E  + +
Sbjct: 761 EELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLE 820

Query: 551 ERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIE 610
           +R + L  E+  LEE+   L     +LE +LE  + E+   K+++  LE E+++ +  ++
Sbjct: 821 QRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELK 880

Query: 611 ALQEEKKMMQSKLRKA 626
            L+EEK+ ++ +LR+ 
Sbjct: 881 ELEEEKEELEEELREL 896

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 63.6 bits (155), Expect = 3e-10
 Identities = 45/166 (27%), Positives = 81/166 (48%)

Query: 459 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEM 518
                 LE+ ++ L  E  +L+  LE  R   E L  +   L          + QL+S +
Sbjct: 680 EAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRL 739

Query: 519 EKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLE 578
           E+L+EE++    ELE  +     +  E  + +E    L  E+  LEEK   L+    +LE
Sbjct: 740 EELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELE 799

Query: 579 RQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR 624
            +LE ++  + + ++++ SLE+ R+  +  IE L+EE + ++ KL 
Sbjct: 800 EELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLD 845

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 62.0 bits (151), Expect = 8e-10
 Identities = 42/167 (25%), Positives = 83/167 (49%)

Query: 462 FAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKL 521
             +LE  +E+L ++   L+R LE  +    +L  E   L     +    + +L+ E+E+L
Sbjct: 697 LRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEEL 756

Query: 522 QEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQL 581
           QE ++    ELES     A ++ E    +E+ + L  E+  LEE+          LER+L
Sbjct: 757 QERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALEREL 816

Query: 582 ENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASG 628
           E+ +      +++I  LE+E ++ +  ++ L+EE + ++ +L +   
Sbjct: 817 ESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKE 863

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 60.9 bits (148), Expect = 2e-09
 Identities = 42/169 (24%), Positives = 80/169 (47%), Gaps = 14/169 (8%)

Query: 457 KHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKS 516
              E  A L++ IE+L +++ ALQ  LE      E       +L            +L+ 
Sbjct: 769 SLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQ 828

Query: 517 EMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELK 576
           E+E+L+EEI+    ELE           + +  +E  + L  E+  L+E+   L + + +
Sbjct: 829 EIEELEEEIE----ELEE----------KLDELEEELEELEKELEELKEELEELEAEKEE 874

Query: 577 LERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRK 625
           LE +L+  + E    ++++  LE E  + +  IE L+E  + +++KL +
Sbjct: 875 LEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLER 923

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 59.7 bits (145), Expect = 4e-09
 Identities = 44/189 (23%), Positives = 87/189 (46%), Gaps = 18/189 (9%)

Query: 456 TKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYN-------QQR 508
           ++  E+   L++ +E+  +E   L+  LE  R   E L  E   L +            R
Sbjct: 249 SRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLR 308

Query: 509 SVVNQLKSEMEKLQEEIKVQLVELESFRN----------EYANVRLECNAADERAKILAS 558
             + +L++E+E+L+E ++    ++E+ +           E   +  E   A E  +   S
Sbjct: 309 ERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLS 368

Query: 559 EVI-GLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKK 617
            ++  LEE    LR    +LE +L   ++E+   K++I SLE+  +     +E L+EE K
Sbjct: 369 ALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELK 428

Query: 618 MMQSKLRKA 626
            ++++L + 
Sbjct: 429 ELEAELEEL 437

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 57.8 bits (140), Expect = 2e-08
 Identities = 37/161 (22%), Positives = 75/161 (46%), Gaps = 7/161 (4%)

Query: 480 QRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEY 539
           +RS  A +   + L  E + L     +    +  LK+E+  L++ ++    +LE    + 
Sbjct: 659 KRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQL 718

Query: 540 ANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLE 599
             ++ E  A +E  + L S +  LEE+   L     +L+ +LE  + E+ S ++ ++ L+
Sbjct: 719 EELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLK 778

Query: 600 KE-------RQDFQSTIEALQEEKKMMQSKLRKASGSGKSI 633
           +E       RQ  Q  +E L+EE +  + +L       +S+
Sbjct: 779 EEIEELEEKRQALQEELEELEEELEEAERRLDALERELESL 819

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 57.4 bits (139), Expect = 2e-08
 Identities = 39/193 (20%), Positives = 83/193 (43%)

Query: 436 DIRRLGSNESSIENQHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAA 495
           +I  L    S +  +      +  E    LE+  E +   K  L+        L + LA 
Sbjct: 296 EIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAE 355

Query: 496 ENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKI 555
              +  +   +  +++ +L+   E L+EE+     EL   RNE   ++ E  + +ER + 
Sbjct: 356 LEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLER 415

Query: 556 LASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEE 615
           L+  +  L+E+   L +   +L+ +LE    E+   ++++  L    ++ +  +  LQEE
Sbjct: 416 LSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAELQEE 475

Query: 616 KKMMQSKLRKASG 628
            + ++ +L     
Sbjct: 476 LQRLEKELSSLEA 488

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 57.8 bits (140), Expect = 2e-08
 Identities = 44/192 (22%), Positives = 83/192 (43%), Gaps = 10/192 (5%)

Query: 434 RGDIRRLGSNESSIENQHGFYSTKH---NEDFAALEQHIEDLTQEKFALQRSLEASRALS 490
              I  L    + +E        +     E+   L + +E+L+++  AL++ L    A  
Sbjct: 683 EEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEV 742

Query: 491 ESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAAD 550
           E L    + L+    +  + + +L+  +E+ +EE+     E+E    +   ++ E  A  
Sbjct: 743 EQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALR 802

Query: 551 ERAKILASEVIGLEEKALRLRSNELKLERQ-------LENSQSEISSYKKKISSLEKERQ 603
           E    L +E+  L E+A  LR     LER+       LE+ + +I    + I SL  E +
Sbjct: 803 EALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIE 862

Query: 604 DFQSTIEALQEE 615
           + +  IE L+ E
Sbjct: 863 ELEELIEELESE 874

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 57.8 bits (140), Expect = 2e-08
 Identities = 40/168 (23%), Positives = 72/168 (42%), Gaps = 7/168 (4%)

Query: 459 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEM 518
            +D A LE  +E L +    L + L    A  E L        +   +  + + +L++++
Sbjct: 732 RKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQI 791

Query: 519 EKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLE 578
           E+L+EE+K     L+  R E   +  E     ER + L   +   E +          LE
Sbjct: 792 EQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLED-------LE 844

Query: 579 RQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA 626
            Q+E    +I S   +I  LE+  ++ +S +EAL  E+  ++  L   
Sbjct: 845 EQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALL 892

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 57.4 bits (139), Expect = 3e-08
 Identities = 31/184 (16%), Positives = 77/184 (41%), Gaps = 14/184 (7%)

Query: 458 HNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSE 517
             E+   L++ +++  +E   L   L+      E L  E S L +   + +  +  L +E
Sbjct: 237 LREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANE 296

Query: 518 MEKLQEEIKVQLVELESFRNEYANV--------------RLECNAADERAKILASEVIGL 563
           + +L+++ ++    L +   +   +                E    +E+ + L  E+  L
Sbjct: 297 ISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESL 356

Query: 564 EEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKL 623
           E +   L +   +LE +LE  + ++ + + K++ LE +     + IE L+   + ++ + 
Sbjct: 357 EAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRR 416

Query: 624 RKAS 627
            +  
Sbjct: 417 ERLQ 420

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 57.0 bits (138), Expect = 3e-08
 Identities = 37/165 (22%), Positives = 74/165 (44%)

Query: 463 AALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQ 522
           A LE  I+ L  E   L+R +E  R   + L  E + L +     R+ + ++  E  + +
Sbjct: 325 AKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETR 384

Query: 523 EEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLE 582
           +E+K    +LE  + E   ++ E +   E  + L+ E+  L      + +   +LE + E
Sbjct: 385 DELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKE 444

Query: 583 NSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKAS 627
           +   EI   + K+  L  +   ++  +  L+EE   ++ +L K  
Sbjct: 445 DKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQ 489

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 56.6 bits (137), Expect = 4e-08
 Identities = 36/177 (20%), Positives = 79/177 (44%)

Query: 457 KHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKS 516
           +  E    LE+ I +L +    L++ LE      E L  E   L+   +  R  + +L++
Sbjct: 681 ELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEA 740

Query: 517 EMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELK 576
           E+E+L+E I     EL     E   +      A+E      +E+  LE +  +L+     
Sbjct: 741 EVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKA 800

Query: 577 LERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKSI 633
           L   L+  ++E++   ++ ++L +  +  +  I A +   + ++ ++ + S   +S+
Sbjct: 801 LREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESL 857

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 56.2 bits (136), Expect = 6e-08
 Identities = 33/168 (19%), Positives = 72/168 (42%), Gaps = 2/168 (1%)

Query: 460 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEME 519
           ED ++LEQ IE++  E   L+  +E        L    + L    +  R  + ++++E+ 
Sbjct: 744 EDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSR--IPEIQAELS 801

Query: 520 KLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLER 579
           KL+EE+      L     +   + LE    ++  + L  + I L+E+   +      L  
Sbjct: 802 KLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNG 861

Query: 580 QLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKAS 627
           + E  + E+   +  +  LE    D +   + L+ + + ++ K+ +  
Sbjct: 862 KKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELE 909

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 55.9 bits (135), Expect = 7e-08
 Identities = 53/269 (19%), Positives = 111/269 (41%), Gaps = 8/269 (2%)

Query: 465 LEQHIEDLTQEKFALQRSLEASRALSE----SLAAENSSLTDSYNQQRSVVNQLKSEMEK 520
           LE+ +E L ++    +R  E    L E     L A+   L     +    +++L+ E+E+
Sbjct: 198 LEKQLEKLERQAEKAERYQELKAELRELELALLLAKLKELRKELEELEEELSRLEEELEE 257

Query: 521 LQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQ 580
           LQEE++    E+E  ++E   +R E     E    L  E+  LE +   LR    +LE +
Sbjct: 258 LQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENE 317

Query: 581 LENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKSIDFGKTAA 640
           LE  +  +   K+KI +L++E ++ ++ +E L++    ++    +     + +       
Sbjct: 318 LEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELE---EKLSALLEEL 374

Query: 641 STVNASTSTEDLAITDTTLDNSNQDTHDDASLPRIDASGSTLLPESGRLALEGLAVNIPH 700
             +  +   E   +     +  N+       +  ++     L      L  E   +    
Sbjct: 375 EELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAEL 434

Query: 701 DQMRM-IHNINALISELALEKEELVQALS 728
           ++++  +  +N  + EL  + EEL   L 
Sbjct: 435 EELQTELEELNEELEELEEQLEELRDRLK 463

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 55.8 bits (135), Expect = 8e-08
 Identities = 42/182 (23%), Positives = 82/182 (45%), Gaps = 21/182 (11%)

Query: 461 DFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLT-DSYNQQRSVVNQLKSEME 519
             A+LE+ +E LT+E   L++ LE    L E L  +   L  +   + +  + +L++E+ 
Sbjct: 245 QLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIA 304

Query: 520 KLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRS--NELK- 576
            L+  I  +  ELE      A +  E +      + L  E   +EE+  R      E   
Sbjct: 305 SLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELERE---IEEERKRRDKLTEEYAE 361

Query: 577 LERQLENSQSEI--------------SSYKKKISSLEKERQDFQSTIEALQEEKKMMQSK 622
           L+ +LE+ ++E+                Y++K+  L++E  + +  ++ LQEE + +  +
Sbjct: 362 LKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEE 421

Query: 623 LR 624
           L 
Sbjct: 422 LA 423

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 54.3 bits (131), Expect = 2e-07
 Identities = 43/170 (25%), Positives = 77/170 (45%), Gaps = 14/170 (8%)

Query: 460 EDFAALEQHIED-------LTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVN 512
            +   LE+ IE+       LT+E   L+  LE  RA  E +  E +   D     R  + 
Sbjct: 336 AEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLE 395

Query: 513 QLKSEME-------KLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEE 565
           +LK E+        +LQEE++    EL       A +  + N  +E  +  A E+   E 
Sbjct: 396 KLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEW 455

Query: 566 KALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEE 615
           K  +L ++  K E++L + + E    +K++S L++E  + ++   A +E 
Sbjct: 456 KLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEER 505

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 53.6 bits (129), Expect = 4e-07
 Identities = 43/173 (24%), Positives = 75/173 (43%), Gaps = 11/173 (6%)

Query: 456 TKHNEDFAALEQHIEDLTQEKFALQRSL----EASRALSESLAAENSSLTDSYNQQRSVV 511
            +       LEQ + +L + K  L+  L    E    L E+L  E + L     + R+ +
Sbjct: 340 EERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNEL 399

Query: 512 NQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLR 571
            +LK E+E L+E ++     LE  + E   +  E        + L  E+  LEE+   LR
Sbjct: 400 EELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELR 459

Query: 572 SNELKLER-------QLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKK 617
               +LER       +L+  + E+SS + ++  LE E++  Q     L+  + 
Sbjct: 460 DRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQRASQGVRAVLEALES 512

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 53.2 bits (128), Expect = 4e-07
 Identities = 45/216 (20%), Positives = 89/216 (41%), Gaps = 27/216 (12%)

Query: 434  RGDIRRLGSNESSIENQHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESL 493
              ++        ++E +      +       LEQ IE+L +E   L+  L+      E L
Sbjct: 799  EEELEEAERRLDALERELESLEQRRER----LEQEIEELEEEIEELEEKLDELEEELEEL 854

Query: 494  AAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKV---QLVELESFRNEY----ANVRLEC 546
              E   L +   +  +   +L+ E+++L+EE +    +L ELES   E       +R   
Sbjct: 855  EKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERL 914

Query: 547  NAADERAKILASEVIGLEEKALRLRSNEL--KLERQLENSQSEISSY------------- 591
               + + + L  E+  LEE+      + L  +LER++E  + EI +              
Sbjct: 915  EELEAKLERLEVELPELEEELEEEYEDTLETELEREIERLEEEIEALGPVNLRAIEEYEE 974

Query: 592  -KKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA 626
             +++   L+ +R+D +   E L E  + +  + R+ 
Sbjct: 975  VEERYEELKSQREDLEEAKEKLLEVIEELDKEKRER 1010

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 53.5 bits (129), Expect = 4e-07
 Identities = 42/185 (22%), Positives = 75/185 (40%), Gaps = 25/185 (13%)

Query: 435 GDIRRLGSNESSIENQHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLA 494
                L +   +++      +   NE+ A L + +E L +   A +R LE      E L+
Sbjct: 793 QLKEELKALREALDELRAELTL-LNEEAANLRERLESLERRIAATERRLEDLEEQIEELS 851

Query: 495 AENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAK 554
            +  SL               +E+E+L+E I+    ELE+  NE A++           +
Sbjct: 852 EDIESLA--------------AEIEELEELIEELESELEALLNERASLEEALALLRSELE 897

Query: 555 ILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQE 614
            L+ E+  LE K   LR       R+LE  + +++  + ++  LE       +  E L E
Sbjct: 898 ELSEELRELESKRSELR-------RELEELREKLAQLELRLEGLE---VRIDNLQERLSE 947

Query: 615 EKKMM 619
           E  + 
Sbjct: 948 EYSLT 952

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 53.5 bits (129), Expect = 4e-07
 Identities = 33/177 (18%), Positives = 72/177 (40%), Gaps = 7/177 (3%)

Query: 457 KHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKS 516
           +  E  A L + + +L  E   L+  LE +        AE   L     Q +  +  L+ 
Sbjct: 744 QLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALRE 803

Query: 517 EMEKLQEEIK-------VQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALR 569
            +++L+ E+             LES     A         +E+ + L+ ++  L  +   
Sbjct: 804 ALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEE 863

Query: 570 LRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA 626
           L     +LE +LE   +E +S ++ ++ L  E ++    +  L+ ++  ++ +L + 
Sbjct: 864 LEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEEL 920

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 53.1 bits (128), Expect = 4e-07
 Identities = 44/201 (21%), Positives = 87/201 (43%), Gaps = 22/201 (10%)

Query: 457 KHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKS 516
           K  E++  L++ +  L  E  +L++ LE    L + LA     L +   +   ++ +L+ 
Sbjct: 522 KKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEE 581

Query: 517 EMEKLQEEIKVQLVELESFRNEY---ANVRLECNAADERAKILASEV------IGLEEKA 567
              +  EE++ +L ELE F NEY    +   E    ++  K L  E+      +   EK 
Sbjct: 582 LGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKR 641

Query: 568 LRLRSNEL-------------KLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQE 614
           L     EL             +L  +      E++  + ++  LEK R++ + T+E L+E
Sbjct: 642 LEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKE 701

Query: 615 EKKMMQSKLRKASGSGKSIDF 635
           E +  +   ++     K+++ 
Sbjct: 702 ELEEREKAKKELEKLEKALER 722

Length = 880

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 52.8 bits (127), Expect = 6e-07
 Identities = 47/275 (17%), Positives = 109/275 (39%), Gaps = 24/275 (8%)

Query: 471 DLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLV 530
           +L  E   L+ +L         L      L +   + +  + + + E+E+L  E++    
Sbjct: 217 ELKAELRELELAL---------LVLRLEELREELEELQEELKEAEEELEELTAELQELEE 267

Query: 531 ELESFRNEYANVRLECNAADERAKILASEVIGLE-------EKALRLRSNELKLERQLEN 583
           +LE  R E + +  E     +    LA+E+  LE       E+   L     +LE QLE 
Sbjct: 268 KLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEE 327

Query: 584 SQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKSIDFGKTAASTV 643
            +S++    ++++ LE++ ++ +  +E+L+ E + ++++L +     + ++       + 
Sbjct: 328 LESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSK 387

Query: 644 NASTSTEDLAITDTTLDNSNQDTHDDASLPRIDASGSTLLPESGRLALEGLAVNIPHDQM 703
            A    +  ++ +       +    +    R+      LL +     L+ L   +     
Sbjct: 388 VAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELE---- 443

Query: 704 RMIHNINALISELALEKEELVQALSSELAQSSKLK 738
                +   + EL  E E L +AL     +  + +
Sbjct: 444 ----ELEEELEELQEELERLEEALEELREELEEAE 474

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 52.4 bits (126), Expect = 8e-07
 Identities = 42/163 (25%), Positives = 68/163 (41%), Gaps = 13/163 (7%)

Query: 460 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEME 519
           E+ A LE+ +E+L +E  +L+  LE   A  E L +    L +     RS V QL+ ++ 
Sbjct: 337 EELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIA 396

Query: 520 KLQEEIKVQLVELESF---------RNEYANVRLECNAADERAKILASEVIGLEEKALRL 570
            L  EI+     LE             E    +LE     E    L      LEE    L
Sbjct: 397 SLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEEL 456

Query: 571 RSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQ 613
                 LE  LE  + E+   ++ + + E+E    Q+ +++L+
Sbjct: 457 ER----LEEALEELREELEEAEQALDAAERELAQLQARLDSLE 495

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 51.2 bits (123), Expect = 2e-06
 Identities = 27/159 (16%), Positives = 63/159 (39%)

Query: 466 EQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEI 525
            + IE+L ++   L+  +         L  E   L +   Q R  + +L  ++  L++++
Sbjct: 676 RREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDL 735

Query: 526 KVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQ 585
                E+E      A +  E    +   + L   +   EE+     +   +LE Q+E  +
Sbjct: 736 ARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLK 795

Query: 586 SEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR 624
            E+ + ++ +  L  E          L+E  + ++ ++ 
Sbjct: 796 EELKALREALDELRAELTLLNEEAANLRERLESLERRIA 834

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 50.9 bits (122), Expect = 2e-06
 Identities = 35/177 (19%), Positives = 66/177 (37%), Gaps = 9/177 (5%)

Query: 456 TKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQL- 514
               E  A LE+  E L + K  L           +    E   L     +    + +L 
Sbjct: 235 EALEERLAELEEEKERLEELKARLLEIESLELEALKIREEELRELERLLEELEEKIERLE 294

Query: 515 -----KSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALR 569
                  E+E+  E ++  L ELE    +  ++       +E+ + L SE   LEE A  
Sbjct: 295 ELEREIEELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESE---LEELAEE 351

Query: 570 LRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA 626
                  LE +L+  +  +   +K++    +  +  +  I+ L+EE   + + L + 
Sbjct: 352 KNELAKLLEERLKELEERLEELEKELEKALERLKQLEEAIQELKEELAELSAALEEI 408

Length = 908

>gnl|CDD|220365 pfam09726, Macoilin, Transmembrane protein

 Score = 49.5 bits (118), Expect = 5e-06
 Identities = 84/435 (19%), Positives = 149/435 (34%), Gaps = 62/435 (14%)

Query: 200 QGIEESQSKGNDSFPKVPTLVNSGPSHDFVTKISPQNSVSTLFQSKPSNAIALGNGHSFH 259
           +   E+ SKG  S  ++  + NSG +H      S  +    L  S+        + H  H
Sbjct: 214 KEKSEASSKGLTSTKELVPVQNSGGNHS--LSKSSNSQTPELEYSEKGKDHHHSHNHQHH 271

Query: 260 SSSEGTAHLTTSTGGSASEVGLNTPSTTNFSDPVSFNTGEGKPSNSASGLASLQSTPFKR 319
           S      H   +       + +   + +N S P S +T   K + S S  A+  S   K 
Sbjct: 272 SIGINNHHSKHADSKL-QTIEVIE-NHSNKSRPSSSSTNGSKETTSNSSSAAAGSIGSKS 329

Query: 320 SEYSGYNFDAGNSFNHVPVSSATNKFTLGKSRASFLDSLNVPRASSGTLFEQTEPERDSF 379
           S+                 S+  +      S      S N    SS     +++ +R S 
Sbjct: 330 SK-----------------SAKHSNRNKSNSSPKSHSSANGSVPSSSVSDNESKQKRASK 372

Query: 380 MSSSSLNSMDVLGSSPAQNPSMEKETTGAFSKTTTSNIPSAFDYLGNPTVSTSDRGDIRR 439
            SS + +S        A             S       PSA + L           DI++
Sbjct: 373 SSSGARDSKKDASGMSANGTVENCIPENKIST------PSAIERL---------EQDIKK 417

Query: 440 LGSNESSIENQHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSS 499
           L +                 ++ + L   I  LT  + +L+  L   +  ++ L  + +S
Sbjct: 418 LQAELQQ-----------ARQNESELRNQISLLTSLERSLKSDLGQLKKENDMLQTKLNS 466

Query: 500 LTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASE 559
           +  +  + +    Q    MEK  +      V  E    E    + E      RA   A+ 
Sbjct: 467 MVSAKQKDK----QSMQSMEKRLKSEADSRVNAEKQLAEEKKRKKEEEETAARAAAQAAA 522

Query: 560 VIGLEEKALRLRSNEL-----KLERQLENSQSEISSYKKKISSL------EKERQDFQST 608
                 ++L+    +L     KLE  L+  + E    +K+   L      EKE +   S 
Sbjct: 523 SREECAESLKQAKQDLEMEIKKLEHDLKLKEEECRMLEKEAQELRKYQESEKETEVLMSA 582

Query: 609 IEALQEEKKMMQSKL 623
           ++A+Q++  M+++ L
Sbjct: 583 LQAMQDKNLMLENSL 597

This entry is a highly conserved protein present in eukaryotes. Length = 680

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 49.4 bits (118), Expect = 7e-06
 Identities = 41/156 (26%), Positives = 68/156 (43%), Gaps = 8/156 (5%)

Query: 460 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEME 519
           ++   LEQ IE L +    L+   E    L   L    S   ++   +   + +L+  +E
Sbjct: 225 QEEEELEQEIEALEERLAELEEEKERLEELKARLLEIESLELEALKIREEELRELERLLE 284

Query: 520 KLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLER 579
           +L+E+I+ +L ELE    E     LE        + L  E+  L EK   L     KLE 
Sbjct: 285 ELEEKIE-RLEELER-EIEELEEELE------GLRALLEELEELLEKLKSLEERLEKLEE 336

Query: 580 QLENSQSEISSYKKKISSLEKERQDFQSTIEALQEE 615
           +LE  +SE+    ++ + L K  ++    +E   EE
Sbjct: 337 KLEKLESELEELAEEKNELAKLLEERLKELEERLEE 372

Length = 908

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 48.9 bits (117), Expect = 8e-06
 Identities = 41/197 (20%), Positives = 88/197 (44%), Gaps = 29/197 (14%)

Query: 459 NEDFAALEQHIEDLTQ-EKFALQR---SLEASRALSE-SLAAENSSLTDSYNQQR---SV 510
            +    L + I+DL + E+  ++     LEA  A  E S+A +   L D+  +     + 
Sbjct: 271 EQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAE 330

Query: 511 VNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRL 570
           +++L +E+E+L+ EI+ +    +    EYA ++ E          L +E+  ++++    
Sbjct: 331 IDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELED-------LRAELEEVDKEFAET 383

Query: 571 RSNELKLERQLENSQSEISSYKKKISSLEKERQ--------------DFQSTIEALQEEK 616
           R        +LE  + EI+  K+++  L++E Q                ++ I  L+EEK
Sbjct: 384 RDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEK 443

Query: 617 KMMQSKLRKASGSGKSI 633
           +    +++K     + +
Sbjct: 444 EDKALEIKKQEWKLEQL 460

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 48.9 bits (117), Expect = 9e-06
 Identities = 40/177 (22%), Positives = 72/177 (40%), Gaps = 21/177 (11%)

Query: 457 KHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQL-- 514
           +  E+ A  E  IE+L  +   L+  L+A R   + L AE + L +     R  +  L  
Sbjct: 772 EAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLER 831

Query: 515 -----KSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALR 569
                +  +E L+E+I+    ++ES   E   +       +   + L +E   LEE    
Sbjct: 832 RIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALAL 891

Query: 570 LRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA 626
           LRS   +L  +L                LE +R + +  +E L+E+   ++ +L   
Sbjct: 892 LRSELEELSEELRE--------------LESKRSELRRELEELREKLAQLELRLEGL 934

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 47.8 bits (114), Expect = 2e-05
 Identities = 46/191 (24%), Positives = 88/191 (46%), Gaps = 3/191 (1%)

Query: 437 IRRLGSNESSIENQHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAE 496
           I+ LG  E  +  +      +   + A+LE+ I +  +E    +  L    A  + L AE
Sbjct: 281 IKDLGEEEQ-LRVKEKIGELE--AEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAE 337

Query: 497 NSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKIL 556
              L     ++R   ++L  E  +L+EE++    ELE    E+A  R E     E+ + L
Sbjct: 338 IEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKL 397

Query: 557 ASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEK 616
             E+  L+ +  RL+    +L  +L +  + I+  + KI+ LE+E++D    I+  + + 
Sbjct: 398 KREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKL 457

Query: 617 KMMQSKLRKAS 627
           + + + L K  
Sbjct: 458 EQLAADLSKYE 468

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|224495 COG1579, COG1579, Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

 Score = 46.6 bits (111), Expect = 2e-05
 Identities = 36/143 (25%), Positives = 69/143 (48%), Gaps = 13/143 (9%)

Query: 483 LEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANV 542
           L++  A+ + L  E   L     + R  + + K+E+E L + ++   +ELE   N+ +  
Sbjct: 6   LKSLLAIQK-LDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVS-- 62

Query: 543 RLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKER 602
           +LE    + R +I          K    + + +K ER+L     EI   K++I+SLE E 
Sbjct: 63  QLESEIQEIRERI----------KRAEEKLSAVKDERELRALNIEIQIAKERINSLEDEL 112

Query: 603 QDFQSTIEALQEEKKMMQSKLRK 625
            +    IE L++E + ++ +L +
Sbjct: 113 AELMEEIEKLEKEIEDLKERLER 135

Length = 239

>gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function unknown]

 Score = 47.4 bits (113), Expect = 2e-05
 Identities = 39/171 (22%), Positives = 70/171 (40%), Gaps = 20/171 (11%)

Query: 466 EQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEI 525
           E   E+  +E    ++ ++      E L  ENS L     + +  + +L+SE+E+ + E+
Sbjct: 407 EGTEEEERREITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREV 466

Query: 526 KVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQ 585
           + ++ +             E  A D R + L  E   LEEK  R+   E KL    +  +
Sbjct: 467 RDKVRK-----------DREIRARDRRIERLEKE---LEEKKKRVEELERKLAELRKMRK 512

Query: 586 SEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSK---LRKASGSGKSI 633
            E+S     +  +EK   +    IE  +EE  + +     +   SG G   
Sbjct: 513 LELSGKGTPVKVVEKLTLE---AIEEAEEEYGIKEGDVILVEDPSGGGART 560

Length = 652

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 47.0 bits (112), Expect = 3e-05
 Identities = 36/161 (22%), Positives = 71/161 (44%), Gaps = 14/161 (8%)

Query: 457 KHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKS 516
              E+   LE+ +E+  +   AL+R LE+     E L  E   L +   +       L+ 
Sbjct: 790 ALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEE-------LEE 842

Query: 517 EMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELK 576
           ++++L+EE+       E    E   ++ E    +   + L  E+  LEE+   L     +
Sbjct: 843 KLDELEEEL-------EELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRE 895

Query: 577 LERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKK 617
           LE +L   + EI   ++++  LE + +  +  +  L+EE +
Sbjct: 896 LESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELE 936

Length = 1163

>gnl|CDD|130902 TIGR01843, type_I_hlyD, type I secretion membrane fusion protein, HlyD family

 Score = 46.9 bits (112), Expect = 3e-05
 Identities = 37/209 (17%), Positives = 87/209 (41%), Gaps = 43/209 (20%)

Query: 430 STSDRGDIRRLGSNESSIENQHGFYSTKHNEDFAALEQHIED----LTQEKFALQRSLEA 485
           +T    D   L S    +E +            A  +  IE     L+ E  A+   ++ 
Sbjct: 76  ATDVEADAAELESQVLRLEAEVARLRA-----EADSQAAIEFPDDLLSAEDPAVPELIKG 130

Query: 486 SRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLE 545
            ++L     +  S+L       R+ +  + +++++L+ E+     +L++ R         
Sbjct: 131 QQSL---FESRKSTL-------RAQLELILAQIKQLEAELAGLQAQLQALR--------- 171

Query: 546 CNAADERAKILASEVIG---LEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKE- 601
                ++ ++++ E+     L+EK L  R   L+LER+   +Q E+   + ++  L+++ 
Sbjct: 172 -----QQLEVISEELEARRKLKEKGLVSRLELLELERERAEAQGELGRLEAELEVLKRQI 226

Query: 602 ---RQDFQSTIEALQEEKKMMQSKLRKAS 627
              + + Q   +  +EE   +  +L +A 
Sbjct: 227 DELQLERQQIEQTFREE---VLEELTEAQ 252

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins [Protein fate, Protein and peptide secretion and trafficking]. Length = 423

>gnl|CDD|206034 pfam13863, DUF4200, Domain of unknown function (DUF4200)

 Score = 43.0 bits (102), Expect = 5e-05
 Identities = 25/112 (22%), Positives = 57/112 (50%), Gaps = 12/112 (10%)

Query: 504 YNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGL 563
           + ++  ++ Q + E+EK +EE++  L++ + F  E    R     A+++A+         
Sbjct: 23  FERREELLKQREEELEKKEEELQESLIKFDKFLKENEAKR---RRAEKKAEE-------- 71

Query: 564 EEKALRLRSNELK-LERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQE 614
           E+K  + +  E+K L+ +LE  ++EI   ++K+   +   +  +S +E   E
Sbjct: 72  EKKLRKEKEEEIKELKAELEELKAEIEKLEEKLEEYQPYEEFLESVVERSPE 123

This family is found in eukaryotes. It is a coiled-coil domain of unknwon function. Length = 126

>gnl|CDD|235316 PRK04863, mukB, cell division protein MukB; Provisional

 Score = 46.1 bits (110), Expect = 7e-05
 Identities = 36/171 (21%), Positives = 74/171 (43%), Gaps = 24/171 (14%)

Query: 460  EDFAALEQHIEDLTQEKFAL----QRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLK 515
            +D+   +Q   D  Q+ FAL    QR    S   +  + A+NS L +   Q+      L+
Sbjct: 942  QDYQQAQQTQRDAKQQAFALTEVVQRRAHFSYEDAAEMLAKNSDLNEKLRQR------LE 995

Query: 516  SEMEKLQEEIKVQLVELESFRNEYANVRL----ECNAADERAKILASEV--IGL-----E 564
             + E+ +   + QL + ++   +Y  V        +A  +  + L  E+  +G+      
Sbjct: 996  -QAEQERTRAREQLRQAQAQLAQYNQVLASLKSSYDAKRQMLQELKQELQDLGVPADSGA 1054

Query: 565  EKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEE 615
            E+  R R +EL    +L  ++S  +  +K+++  E E  +    +  L+ +
Sbjct: 1055 EERARARRDEL--HARLSANRSRRNQLEKQLTFCEAEMDNLTKKLRKLERD 1103

Length = 1486

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 45.8 bits (109), Expect = 8e-05
 Identities = 30/169 (17%), Positives = 74/169 (43%), Gaps = 1/169 (0%)

Query: 457 KHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKS 516
           K  E+ + +E  + ++ Q+   L    E      + L  +   L +        +  L  
Sbjct: 802 KLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNG 861

Query: 517 EMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELK 576
           + E+L+EE++     L    +   +++ E +  + + + L  ++  LE +  + R    +
Sbjct: 862 KKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSE 921

Query: 577 LERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRK 625
           L+ +LE  + E+S  +      E+  ++  S +E +Q E + ++ ++R 
Sbjct: 922 LKAKLEALEEELSEIEDPKGEDEEIPEEELS-LEDVQAELQRVEEEIRA 969

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|225638 COG3096, MukB, Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]

 Score = 45.6 bits (108), Expect = 1e-04
 Identities = 42/182 (23%), Positives = 82/182 (45%), Gaps = 18/182 (9%)

Query: 460  EDFAALEQHIEDLTQEKFAL----QRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLK 515
            ED+A  +Q      Q+ FAL    QR    S + S  + +ENS L +   + R  + Q +
Sbjct: 941  EDYAQAQQMQRQARQQAFALTEVVQRRAHFSYSDSAEMLSENSDLNE---KLRQRLEQAE 997

Query: 516  SEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVI--------GLEEKA 567
            +E  + +E+++    +L  +    A+++   +   E    L  E+         G EE+A
Sbjct: 998  AERTRAREQLRQHQAQLSQYNQVLASLKSSYDTKKELLNELQQELQDIGVRADSGAEERA 1057

Query: 568  LRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKAS 627
             R+R +EL    QL  ++S  +  +K+++  E E  +    +  L+ +   M+ ++  A 
Sbjct: 1058 -RIRRDEL--HAQLSTNRSRRNQLEKQLTFCEAEMDNLTRKLRKLERDYFEMREQVVTAK 1114

Query: 628  GS 629
              
Sbjct: 1115 AG 1116

Length = 1480

>gnl|CDD|217933 pfam04156, IncA, IncA protein

 Score = 43.2 bits (102), Expect = 1e-04
 Identities = 28/132 (21%), Positives = 57/132 (43%), Gaps = 7/132 (5%)

Query: 479 LQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNE 538
           L           + L      L++   Q    +++L+ E+E L+E I     ELE  + +
Sbjct: 60  LLLKAPVQSVRPQKLEELQGELSELKQQ----LSELQEELEDLEERIAELESELEDLKED 115

Query: 539 YANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSL 598
              +R    + +ER + L   +  L ++   LR     L  ++E  + E+   ++ +  L
Sbjct: 116 LQLLRELLKSLEERLESLEESIKELAKELRELRQ---DLREEVEELREELERLQENLQRL 172

Query: 599 EKERQDFQSTIE 610
           ++  Q+ QS +E
Sbjct: 173 QEAIQELQSLLE 184

Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is non-fusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA, is functionally associated with the homotypic fusion of inclusions. This family probably includes members of the wider Inc family rather than just IncA. Length = 186

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 44.7 bits (106), Expect = 2e-04
 Identities = 40/173 (23%), Positives = 76/173 (43%), Gaps = 12/173 (6%)

Query: 455 STKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQL 514
           S     +   L + +E L +E  +LQ  L       + L+ E S  +    +    + QL
Sbjct: 669 SRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQL 728

Query: 515 KSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNE 574
           + E EKL+E ++    +L S   E  NV+ E        K L + +  LEE   +L    
Sbjct: 729 EQEEEKLKERLEELEEDLSSLEQEIENVKSE-------LKELEARIEELEEDLHKLEEAL 781

Query: 575 LKLER-----QLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSK 622
             LE      ++   Q+E+S  ++++S +E   ++ +  +  L  EK+ ++ +
Sbjct: 782 NDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKE 834

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 44.3 bits (105), Expect = 3e-04
 Identities = 35/168 (20%), Positives = 74/168 (44%), Gaps = 13/168 (7%)

Query: 463  AALEQHIEDLTQEKFALQRSLE----ASRALSES---LAAENSSLTDSYNQQRSVVNQLK 515
             ++E+ IE+L  +K  L+  LE    A R L      L  E   L     +    + +L+
Sbjct: 850  KSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELE 909

Query: 516  SEMEKLQEEIKVQLVELESFRNEYANVR------LECNAADERAKILASEVIGLEEKALR 569
            +++EK ++ +     +LE+   E + +        E    +   + + +E+  +EE+   
Sbjct: 910  AQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRA 969

Query: 570  LRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKK 617
            L    +   ++ E     +   K+K + LE+ER+     IE  +++K+
Sbjct: 970  LEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKKR 1017

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 43.9 bits (104), Expect = 3e-04
 Identities = 35/187 (18%), Positives = 71/187 (37%), Gaps = 21/187 (11%)

Query: 460 EDFAALEQHIEDLTQ-------EKFALQRSLEASRALSESLAAENSSLTDSY---NQQRS 509
           E+   LE  IEDL +       E+  L   +   R   E L  E   L       +    
Sbjct: 251 EELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAE 310

Query: 510 VVNQLKSEMEK----LQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEE 565
            V   + E+E     L++ ++   V  ++   E  ++R + +  +ERA+        L E
Sbjct: 311 AVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAE-------ELRE 363

Query: 566 KALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRK 625
           +A  L S   +    +E+ + EI   +++I  L +   D    +   ++  + ++ +  +
Sbjct: 364 EAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDE 423

Query: 626 ASGSGKS 632
                  
Sbjct: 424 LREREAE 430

Length = 880

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 43.9 bits (104), Expect = 4e-04
 Identities = 21/122 (17%), Positives = 58/122 (47%)

Query: 513 QLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRS 572
           +L+ ++E+L+E+I      L   R E   +  E     +  + L+ ++  L +   RL +
Sbjct: 681 ELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEA 740

Query: 573 NELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKS 632
              +LE ++     E++  + +I  LE+  ++ +  +   + E + +++++ +     K+
Sbjct: 741 EVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKA 800

Query: 633 ID 634
           + 
Sbjct: 801 LR 802

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|216108 pfam00769, ERM, Ezrin/radixin/moesin family

 Score = 42.0 bits (99), Expect = 5e-04
 Identities = 39/172 (22%), Positives = 68/172 (39%), Gaps = 14/172 (8%)

Query: 517 EMEKLQEEIKVQLVELESFRNEYANVRLE-----CNAADERAKILASEVIGLEEKALRLR 571
           E E+ Q+E++ ++ ++E      A   LE         +E+ K    E   LE+KA  L 
Sbjct: 2   EAEREQQELEERMEQMEE-DMRRAQKELEEYEETALELEEKLKQEEEEAQLLEKKADELE 60

Query: 572 SNELKLERQLENS-------QSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR 624
               +LE +   S       ++E+     +++ LE+ER+  ++    LQ+E +  Q    
Sbjct: 61  EENRRLEEEAAASEEERERLEAEVDEATAEVAKLEEEREKKEAETRQLQQELREAQEAHE 120

Query: 625 KASGSGKSIDFGKTAASTVNASTSTEDLAITDTTLDNSNQDTHDDASLPRID 676
           +A           TA   V A  + E L   D   + S  D   D  +    
Sbjct: 121 RARQELLEAAAAPTAPPHVAAPVNGEQLEPDDNGEEAS-ADLETDPDMKDRS 171

This family of proteins contain a band 4.1 domain (pfam00373), at their amino terminus. This family represents the rest of these proteins. Length = 244

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 42.4 bits (100), Expect = 8e-04
 Identities = 40/186 (21%), Positives = 77/186 (41%), Gaps = 15/186 (8%)

Query: 437 IRRLGSNESSIENQHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAE 496
            ++L   E  +            E    LE+ +++L  E F     LE   A  E    E
Sbjct: 562 EKKLDELEEELAELLKELEELGFESVEELEERLKEL--EPF-YNEYLELKDAEKELEREE 618

Query: 497 NS--SLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRN--EYANVRLECNAADER 552
                L +  ++    + + +  +E+L++E++    ELE   +  EY  +R E       
Sbjct: 619 KELKKLEEELDKAFEELAETEKRLEELRKELE----ELEKKYSEEEYEELREEYLELSRE 674

Query: 553 AKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEAL 612
              L +E+  LE++   ++    KL+ +LE    E    KK++  LEK  +  +   E +
Sbjct: 675 LAGLRAELEELEKRREEIKKTLEKLKEELE----EREKAKKELEKLEKALERVEELREKV 730

Query: 613 QEEKKM 618
           ++ K +
Sbjct: 731 KKYKAL 736

Length = 880

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 42.4 bits (100), Expect = 8e-04
 Identities = 35/188 (18%), Positives = 69/188 (36%), Gaps = 29/188 (15%)

Query: 458 HNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSE 517
             +      + +ED  QE   L+  LE  R L          L +   + +  + +L+  
Sbjct: 553 QLQQLKEELRQLEDRLQE---LKELLEELRLLRTRKEELEE-LRERLKELKKKLKELEER 608

Query: 518 MEKLQEEIKVQLV-----ELESFRNEYANVR--LECNAADERAKI------------LAS 558
           + +L+E ++   +     ELE    E  +    L   A  E                L +
Sbjct: 609 LSQLEELLQSLELSEAENELEEAEEELESELEKLNLQAELEELLQAALEELEEKVEELEA 668

Query: 559 EVIGLEEKALRL------RSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEAL 612
           E+    ++               +LE +LE  + E+    KK+  +E+  ++ +S    L
Sbjct: 669 EIRRELQRIENEEQLEEKLEELEQLEEELEQLREELEELLKKLGEIEQLIEELESRKAEL 728

Query: 613 QEEKKMMQ 620
           +E KK ++
Sbjct: 729 EELKKELE 736

Length = 908

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 42.1 bits (99), Expect = 0.001
 Identities = 43/185 (23%), Positives = 78/185 (42%), Gaps = 17/185 (9%)

Query: 434 RGDIRRLGSNESSIENQHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESL 493
              I RL   E  IE        +  E   AL + +E+L ++  +L+  LE      E L
Sbjct: 287 EEKIERLEELEREIEEL-----EEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKL 341

Query: 494 AAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERA 553
            +E   L +  N+   +   L+  +++L+E    +L ELE    +     LE     E A
Sbjct: 342 ESELEELAEEKNELAKL---LEERLKELEE----RLEELEKELEK----ALERLKQLEEA 390

Query: 554 -KILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEAL 612
            + L  E+  L      ++    +LE++LE  + E+   +++I  LE++    +S    +
Sbjct: 391 IQELKEELAELSAALEEIQEELEELEKELEELERELEELEEEIKKLEEQINQLESKELMI 450

Query: 613 QEEKK 617
            E   
Sbjct: 451 AELAG 455

Length = 908

>gnl|CDD|221952 pfam13166, AAA_13, AAA domain

 Score = 42.3 bits (100), Expect = 0.001
 Identities = 36/201 (17%), Positives = 86/201 (42%), Gaps = 27/201 (13%)

Query: 459 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEM 518
           +E++  L + +E+L  +    +  +E +    ES+       ++        V +LK+ +
Sbjct: 277 DEEYQELIEQLEELIDK---YESHIEKALEELESILDTEKENSEFKLD----VEELKALL 329

Query: 519 EKLQEEIKV-------------QLVELESFRNEYANVRLECNAADERAKILASEVIGLEE 565
           E L+E ++                +ELES  +   ++    +A +E  +    ++  L++
Sbjct: 330 EALEEILEKNLQKLEEKLKDPSTSIELESITDLIESINDIIDAINELIREHNEKIDNLKK 389

Query: 566 KALRLRSNELKLERQLENS-QSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR 624
           +  + +    KL   L    + +I +Y+K+   LEK     +  I+ L+ E K ++ +++
Sbjct: 390 EKNKAKK---KLWLHLVAELKEDIDAYQKEKKGLEKAINSLEKEIKQLEAEIKALEKEIK 446

Query: 625 KASGSGKSIDFGKTAASTVNA 645
           +      +I   +  A  +N 
Sbjct: 447 ELEKQLTNI---EPTADEINK 464

This family of domains contain a P-loop motif that is characteristic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins. This family includes the PrrC protein that is thought to be the active component of the anticodon nuclease. Length = 713

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 41.6 bits (98), Expect = 0.002
 Identities = 29/153 (18%), Positives = 64/153 (41%), Gaps = 9/153 (5%)

Query: 482 SLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYAN 541
            L+  R   E L  E SSL     +  + +++L  E+     +I            E   
Sbjct: 675 ELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKI-------GEIEKEIEQ 727

Query: 542 VRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKE 601
           +  E     ER + L  ++  LE++   ++S   +LE ++E  + ++   ++ ++ L  E
Sbjct: 728 LEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDL--E 785

Query: 602 RQDFQSTIEALQEEKKMMQSKLRKASGSGKSID 634
            +   S I  +Q E   ++ ++ +     + I+
Sbjct: 786 ARLSHSRIPEIQAELSKLEEEVSRIEARLREIE 818

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 41.2 bits (97), Expect = 0.002
 Identities = 23/111 (20%), Positives = 61/111 (54%)

Query: 513 QLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRS 572
              +E+++L+E ++    EL S ++E   +    +   +     + ++  +E++  +L  
Sbjct: 671 SEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQ 730

Query: 573 NELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKL 623
            E KL+ +LE  + ++SS +++I +++ E ++ ++ IE L+E+   ++  L
Sbjct: 731 EEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEAL 781

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|227061 COG4717, COG4717, Uncharacterized conserved protein [Function unknown]

 Score = 41.4 bits (97), Expect = 0.002
 Identities = 47/204 (23%), Positives = 77/204 (37%), Gaps = 30/204 (14%)

Query: 442 SNESSIENQHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAE----- 496
           S E S E Q    ST   +D   L Q   +LT +   L+    A     E L A      
Sbjct: 604 SRELSPEQQLDILSTM--KDLKKLMQKKAELTHQVARLREEQAAFEERVEGLLAVLEAQF 661

Query: 497 ------------NSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRL 544
                         +      + R  +       ++L +E++    ELE  R E  ++  
Sbjct: 662 IDLSTLFCVQRLRVAAELQKEEARLALEGNIERTKELNDELR---AELELHRKEILDL-F 717

Query: 545 ECNAADERAKILASEVIGLEEKALRLRSNELK-LERQLENSQS---EISSYKKKISSLEK 600
           +C  AD             EE+ L  R + L+ LE QLE   +   E+S+   +    E+
Sbjct: 718 DCGTADTEDAFRE---AAREEQQLTQRESRLESLEAQLEGVAAEAYELSASLDQRELKEE 774

Query: 601 ERQDFQSTIEALQEEKKMMQSKLR 624
           E    +  I+AL EE + + +++ 
Sbjct: 775 ELALLEEAIDALDEEVEELHAQVA 798

Length = 984

>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed

 Score = 41.4 bits (98), Expect = 0.002
 Identities = 37/178 (20%), Positives = 57/178 (32%), Gaps = 34/178 (19%)

Query: 438 RRLGSNESSIENQHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAEN 497
           +RLG  E+ IE           +    L + I  L      L+R LE             
Sbjct: 495 KRLGLPENIIEEAKKLIGEDKEK----LNELIASLE----ELERELE------------- 533

Query: 498 SSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELES-FRNEYANVRLECNAADERAKIL 556
                   Q+      L  E EKL+EE++ +  +L+            E   A + AK  
Sbjct: 534 --------QKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKE 585

Query: 557 ASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQE 614
           A E+I    K LR          +            K     EK+++  +   E L+ 
Sbjct: 586 ADEII----KELRQLQKGGYASVKAHELIEARKRLNKANEKKEKKKKKQKEKQEELKV 639

Length = 782

>gnl|CDD|202833 pfam03962, Mnd1, Mnd1 family

 Score = 38.8 bits (91), Expect = 0.004
 Identities = 17/69 (24%), Positives = 37/69 (53%), Gaps = 7/69 (10%)

Query: 566 KALRLRSNEL-KLERQLENSQSEISSYKKKISSLEKERQDFQST------IEALQEEKKM 618
           +AL      L KL+++LE  +  I+  + +I  L+K R++ +        ++ L++E K 
Sbjct: 62  QALNKLKTRLEKLKKELEELKQRIAELQAQIEKLKKGREETEERTELLEELKQLEKELKK 121

Query: 619 MQSKLRKAS 627
           ++++L K  
Sbjct: 122 LKAELEKYE 130

This family of proteins includes MND1 from S. cerevisiae. The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair. Length = 188

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	739
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	98.15
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	98.1
PRK02224	880	chromosome segregation protein; Provisional	97.66
PRK11637	428	AmiB activator; Provisional	97.63
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	97.5
PRK02224	880	chromosome segregation protein; Provisional	97.49
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	97.48
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	97.42
PRK11637	428	AmiB activator; Provisional	97.37
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	97.27
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	97.24
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	97.22
PHA02562	562	46 endonuclease subunit; Provisional	97.19
PHA02562	562	46 endonuclease subunit; Provisional	97.16
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	97.15
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	97.14
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	97.11
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	97.03
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	96.99
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	96.96
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	96.9
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	96.89
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	96.81
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	96.75
PRK09039	343	hypothetical protein; Validated	96.73
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	96.69
PRK03918	880	chromosome segregation protein; Provisional	96.69
PRK03918	880	chromosome segregation protein; Provisional	96.65
PF00038	312	Filament: Intermediate filament protein; InterPro:	96.61
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	96.58
PRK04778	569	septation ring formation regulator EzrA; Provision	96.58
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	96.58
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	96.53
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	96.51
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	96.32
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	96.27
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	96.27
PF14662	193	CCDC155: Coiled-coil region of CCDC155	96.26
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	96.26
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	96.23
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	96.19
PRK04778	569	septation ring formation regulator EzrA; Provision	96.15
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	96.13
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	96.03
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	95.99
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	95.96
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	95.96
PRK04863	1486	mukB cell division protein MukB; Provisional	95.95
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	95.91
PF00038	312	Filament: Intermediate filament protein; InterPro:	95.85
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	95.81
PRK10361	475	DNA recombination protein RmuC; Provisional	95.74
COG4372	499	Uncharacterized protein conserved in bacteria with	95.72
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	95.69
PRK04863	1486	mukB cell division protein MukB; Provisional	95.66
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	95.63
PRK09039	343	hypothetical protein; Validated	95.62
TIGR01000	457	bacteriocin_acc bacteriocin secretion accessory pr	95.56
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	95.56
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	95.5
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	95.49
TIGR01000	457	bacteriocin_acc bacteriocin secretion accessory pr	95.49
KOG0933	1174	consensus Structural maintenance of chromosome pro	95.49
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	95.44
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	95.34
PF10186	302	Atg14: UV radiation resistance protein and autopha	95.31
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	95.31
PF13166	712	AAA_13: AAA domain	95.3
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	95.2
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	95.17
KOG0933	1174	consensus Structural maintenance of chromosome pro	95.17
PF05700	221	BCAS2: Breast carcinoma amplified sequence 2 (BCAS	95.15
PRK09841	726	cryptic autophosphorylating protein tyrosine kinas	95.12
PF05911	769	DUF869: Plant protein of unknown function (DUF869)	95.07
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	95.06
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	94.95
KOG1103	561	consensus Predicted coiled-coil protein [Function	94.93
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	94.91
COG4942	420	Membrane-bound metallopeptidase [Cell division and	94.89
KOG0996	1293	consensus Structural maintenance of chromosome pro	94.85
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	94.84
PF07111	739	HCR: Alpha helical coiled-coil rod protein (HCR);	94.74
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	94.74
KOG0979	1072	consensus Structural maintenance of chromosome pro	94.73
KOG0971	1243	consensus Microtubule-associated protein dynactin	94.7
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	94.67
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	94.64
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	94.63
PF10186	302	Atg14: UV radiation resistance protein and autopha	94.54
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	94.53
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	94.45
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	94.44
KOG0971	1243	consensus Microtubule-associated protein dynactin	94.34
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	94.34
PF04012	221	PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T	94.32
PF13514	1111	AAA_27: AAA domain	94.29
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	94.27
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	94.25
PRK11281	1113	hypothetical protein; Provisional	94.23
KOG4673	961	consensus Transcription factor TMF, TATA element m	94.11
PF12795	240	MscS_porin: Mechanosensitive ion channel porin dom	93.99
KOG0243	1041	consensus Kinesin-like protein [Cytoskeleton]	93.97
cd07651	236	F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology	93.93
PF14197	69	Cep57_CLD_2: Centrosome localisation domain of PPC	93.85
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	93.8
PRK10476	346	multidrug resistance protein MdtN; Provisional	93.76
KOG0999	772	consensus Microtubule-associated protein Bicaudal-	93.74
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	93.67
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	93.63
KOG0982	502	consensus Centrosomal protein Nuf [Cell cycle cont	93.61
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	93.56
KOG4643	1195	consensus Uncharacterized coiled-coil protein [Fun	93.54
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	93.53
PF13514	1111	AAA_27: AAA domain	93.47
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	93.46
PF00769	246	ERM: Ezrin/radixin/moesin family; InterPro: IPR011	93.28
cd07655	258	F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/	93.27
PF02050	123	FliJ: Flagellar FliJ protein; InterPro: IPR012823	93.27
KOG4593	716	consensus Mitotic checkpoint protein MAD1 [Cell cy	93.19
PRK01156	895	chromosome segregation protein; Provisional	93.18
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	93.14
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	93.05
TIGR01010	362	BexC_CtrB_KpsE polysaccharide export inner-membran	93.0
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	92.95
cd07653	251	F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and B	92.92
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	92.9
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	92.74
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	92.63
PF00769	246	ERM: Ezrin/radixin/moesin family; InterPro: IPR011	92.55
cd07647	239	F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/	92.49
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	92.49
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	92.47
COG1842	225	PspA Phage shock protein A (IM30), suppresses sigm	92.46
PF09744	158	Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; Inte	92.36
KOG0996	1293	consensus Structural maintenance of chromosome pro	92.31
cd07653	251	F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and B	92.21
TIGR02977	219	phageshock_pspA phage shock protein A. Members of	92.16
PRK11519	719	tyrosine kinase; Provisional	92.14
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	92.0
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	91.94
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	91.81
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	91.8
PF05483	786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	91.75
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	91.73
TIGR03017	444	EpsF chain length determinant protein EpsF. Sequen	91.66
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	91.63
PRK10929	1109	putative mechanosensitive channel protein; Provisi	91.58
cd07680	258	F-BAR_PACSIN1 The F-BAR (FES-CIP4 Homology and Bin	91.56
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	91.48
PRK01156	895	chromosome segregation protein; Provisional	91.39
PRK10246	1047	exonuclease subunit SbcC; Provisional	91.31
PRK15422	79	septal ring assembly protein ZapB; Provisional	91.3
KOG0982	502	consensus Centrosomal protein Nuf [Cell cycle cont	91.2
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	91.19
PRK10361	475	DNA recombination protein RmuC; Provisional	91.18
COG4942	420	Membrane-bound metallopeptidase [Cell division and	91.16
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	90.92
TIGR03794	421	NHPM_micro_HlyD NHPM bacteriocin system secretion	90.78
TIGR02473	141	flagell_FliJ flagellar export protein FliJ. Member	90.57
cd07675	252	F-BAR_FNBP1L The F-BAR (FES-CIP4 Homology and Bin/	90.57
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	90.51
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	90.44
KOG0239	670	consensus Kinesin (KAR3 subfamily) [Cytoskeleton]	90.38
TIGR00998	334	8a0101 efflux pump membrane protein (multidrug res	90.29
PRK10246	1047	exonuclease subunit SbcC; Provisional	90.27
cd07671	242	F-BAR_PSTPIP1 The F-BAR (FES-CIP4 Homology and Bin	90.25
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	89.97
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	89.94
PRK10884	206	SH3 domain-containing protein; Provisional	89.91
KOG0964	1200	consensus Structural maintenance of chromosome pro	89.88
PF10234	267	Cluap1: Clusterin-associated protein-1; InterPro:	89.8
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	89.75
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	89.72
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	89.69
PF13166	712	AAA_13: AAA domain	89.67
KOG0288	459	consensus WD40 repeat protein TipD [General functi	89.55
PF14662	193	CCDC155: Coiled-coil region of CCDC155	89.19
COG3074	79	Uncharacterized protein conserved in bacteria [Fun	88.99
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	88.86
PLN03188	1320	kinesin-12 family protein; Provisional	88.63
PF07798	177	DUF1640: Protein of unknown function (DUF1640); In	88.49
PF05546	207	She9_MDM33: She9 / Mdm33 family; InterPro: IPR0088	88.48
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	88.43
cd07666	243	BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of S	88.41
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	88.39
PF09304	107	Cortex-I_coil: Cortexillin I, coiled coil; InterPr	88.15
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	88.12
PF15035	182	Rootletin: Ciliary rootlet component, centrosome c	88.09
KOG0249	916	consensus LAR-interacting protein and related prot	88.0
KOG0964	1200	consensus Structural maintenance of chromosome pro	87.98
PF15066	527	CAGE1: Cancer-associated gene protein 1 family	87.96
KOG1962	216	consensus B-cell receptor-associated protein and r	87.77
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	87.75
PF14915	305	CCDC144C: CCDC144C protein coiled-coil region	87.68
PRK10884	206	SH3 domain-containing protein; Provisional	87.5
PF06818	202	Fez1: Fez1; InterPro: IPR009638 This family repres	87.44
PF08647	96	BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR01395	87.24
PF05483	786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	87.2
PF04012	221	PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T	87.17
TIGR02971	327	heterocyst_DevB ABC exporter membrane fusion prote	87.13
cd07679	258	F-BAR_PACSIN2 The F-BAR (FES-CIP4 Homology and Bin	87.03
cd07672	240	F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin	86.9
cd07649	233	F-BAR_GAS7 The F-BAR (FES-CIP4 Homology and Bin/Am	86.88
PF10481	307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	86.86
KOG4643	1195	consensus Uncharacterized coiled-coil protein [Fun	86.6
cd07652	234	F-BAR_Rgd1 The F-BAR (FES-CIP4 Homology and Bin/Am	86.56
cd07658	239	F-BAR_NOSTRIN The F-BAR (FES-CIP4 Homology and Bin	86.24
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	86.2
KOG0243	1041	consensus Kinesin-like protein [Cytoskeleton]	86.15
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	86.15
COG2433	652	Uncharacterized conserved protein [Function unknow	85.96
PRK05689	147	fliJ flagellar biosynthesis chaperone; Validated	85.84
TIGR02231	525	conserved hypothetical protein. This family consis	85.71
PF05911	769	DUF869: Plant protein of unknown function (DUF869)	85.66
PRK10698	222	phage shock protein PspA; Provisional	85.59
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	85.59
PF14197	69	Cep57_CLD_2: Centrosome localisation domain of PPC	85.53
TIGR03752	472	conj_TIGR03752 integrating conjugative element pro	85.5
TIGR00998	334	8a0101 efflux pump membrane protein (multidrug res	85.43
TIGR03794	421	NHPM_micro_HlyD NHPM bacteriocin system secretion	85.39
cd07676	253	F-BAR_FBP17 The F-BAR (FES-CIP4 Homology and Bin/A	85.35
KOG0018	1141	consensus Structural maintenance of chromosome pro	85.17
PRK10929	1109	putative mechanosensitive channel protein; Provisi	85.14
PRK03598	331	putative efflux pump membrane fusion protein; Prov	85.02
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	84.89
TIGR02977	219	phageshock_pspA phage shock protein A. Members of	84.61
KOG0999	772	consensus Microtubule-associated protein Bicaudal-	84.33
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	84.23
PF07111	739	HCR: Alpha helical coiled-coil rod protein (HCR);	83.52
PF14992	280	TMCO5: TMCO5 family	83.4
PF13815	118	Dzip-like_N: Iguana/Dzip1-like DAZ-interacting pro	83.34
KOG4673	961	consensus Transcription factor TMF, TATA element m	83.04
TIGR02231	525	conserved hypothetical protein. This family consis	82.99
PF06008	264	Laminin_I: Laminin Domain I; InterPro: IPR009254 L	82.81
KOG0239	670	consensus Kinesin (KAR3 subfamily) [Cytoskeleton]	82.55
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	82.42
KOG4593	716	consensus Mitotic checkpoint protein MAD1 [Cell cy	81.97
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	81.88
PF12795	240	MscS_porin: Mechanosensitive ion channel porin dom	81.86
COG3096	1480	MukB Uncharacterized protein involved in chromosom	81.72
PRK12704	520	phosphodiesterase; Provisional	81.67
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	81.39
KOG0249	916	consensus LAR-interacting protein and related prot	81.35
cd00632	105	Prefoldin_beta Prefoldin beta; Prefoldin is a hexa	81.17
cd07622	201	BAR_SNX4 The Bin/Amphiphysin/Rvs (BAR) domain of S	81.15
TIGR01069	771	mutS2 MutS2 family protein. Function of MutS2 is u	81.06
KOG3096	225	consensus Spliceosome-associated coiled-coil prote	81.02
PF11180	192	DUF2968: Protein of unknown function (DUF2968); In	80.87
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	80.65
PRK09841	726	cryptic autophosphorylating protein tyrosine kinas	80.63
PRK00409	782	recombination and DNA strand exchange inhibitor pr	80.45
TIGR02338	110	gimC_beta prefoldin, beta subunit, archaeal. Chape	80.4
KOG0962	1294	consensus DNA repair protein RAD50, ABC-type ATPas	80.32

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=98.15  E-value=0.00052  Score=77.59  Aligned_cols=41  Identities=29%  Similarity=0.410  Sum_probs=19.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 004661          460 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSL  500 (739)
Q Consensus       460 ~~faaLqQhIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaL  500 (739)
                      .+...|++.++++..+--.+...+.....-.+++..+-..+
T Consensus       677 ~e~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~  717 (1179)
T TIGR02168       677 REIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQL  717 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555555555554444444444444444444433333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=98.10  E-value=0.00071  Score=76.53  Aligned_cols=6  Identities=0%  Similarity=0.396  Sum_probs=2.2

Q ss_pred             hhhHHH
Q 004661          706 IHNINA  711 (739)
Q Consensus       706 I~nIn~  711 (739)
                      |+.|..
T Consensus       974 i~~lg~  979 (1179)
T TIGR02168       974 LKRLEN  979 (1179)
T ss_pred             HHHHHH
Confidence            333333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>PRK02224 chromosome segregation protein; Provisional

Probab=97.66  E-value=0.0084  Score=68.29  Aligned_cols=133  Identities=20%  Similarity=0.278  Sum_probs=68.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 004661          461 DFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYA  540 (739)
Q Consensus       461 ~faaLqQhIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~Erd  540 (739)
                      +.+.|+..|+++..++-.+...+..+.++. .|...-+.+.+..+.....+....+..+.|++++..-...++....+++
T Consensus       483 ~~~~le~~l~~~~~~~e~l~~~~~~~~~l~-~l~~~~~~l~~~~~~~~e~le~~~~~~~~l~~e~~~l~~~~~~~~~~~~  561 (880)
T PRK02224        483 ELEDLEEEVEEVEERLERAEDLVEAEDRIE-RLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAA  561 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455555556655554444444444433332 3333333444444544555555555555556665555555555555566


Q ss_pred             HHHhhchhHHHHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHh
Q 004661          541 NVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKI  595 (739)
Q Consensus       541 aArle~~aA~ERak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqv  595 (739)
                      .++.+...+.++...+..++-.|+.++-+|. ..--++.+++++..++..++..+
T Consensus       562 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le-~~~~~~~~i~~~~~~~~~~~~~~  615 (880)
T PRK02224        562 EAEEEAEEAREEVAELNSKLAELKERIESLE-RIRTLLAAIADAEDEIERLREKR  615 (880)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666666666666666666666666665554 33333334444444444333333

>PRK11637 AmiB activator; Provisional

Probab=97.63  E-value=0.018  Score=61.56  Aligned_cols=79  Identities=13%  Similarity=0.149  Sum_probs=54.4

Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 004661          457 KHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESF  535 (739)
Q Consensus       457 ~~~~~faaLqQhIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~  535 (739)
                      ...++...|++-|+++-++.-.+++.+.....-.+.|..+-..+...+|+....+.+++.++++++.+|......++..
T Consensus        44 ~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~  122 (428)
T PRK11637         44 DNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQ  122 (428)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3556677777777777777777777776666666667777777777777777777777777776666666655555444

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=97.50  E-value=0.018  Score=68.85  Aligned_cols=25  Identities=28%  Similarity=0.510  Sum_probs=14.0

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHH
Q 004661          459 NEDFAALEQHIEDLTQEKFALQRSL  483 (739)
Q Consensus       459 ~~~faaLqQhIeDLT~EKfaLqR~L  483 (739)
                      ...+..|+.+|.+++..--.+.+.+
T Consensus       694 ~~~~~~~~~~~~~~~~~~~~~~~~~  718 (1163)
T COG1196         694 KNELRSLEDLLEELRRQLEELERQL  718 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456666666666665554444443

>PRK02224 chromosome segregation protein; Provisional

Probab=97.49  E-value=0.017  Score=65.89  Aligned_cols=9  Identities=33%  Similarity=0.232  Sum_probs=4.0

Q ss_pred             ccccCCCCc
Q 004661          249 AIALGNGHS  257 (739)
Q Consensus       249 ~i~~~~g~s  257 (739)
                      .|.-+||.|
T Consensus        27 ~i~G~Ng~G   35 (880)
T PRK02224         27 VIHGVNGSG   35 (880)
T ss_pred             EEECCCCCC
Confidence            444444444

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=97.48  E-value=0.019  Score=68.58  Aligned_cols=52  Identities=29%  Similarity=0.578  Sum_probs=31.2

Q ss_pred             hHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhC
Q 004661          577 LERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASG  628 (739)
Q Consensus       577 lErele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQEEKKlLqskLRka~a  628 (739)
                      ++..+..+..+++.+..++..+.+++..+...+..+++++..|...|+.+..
T Consensus       847 l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~  898 (1163)
T COG1196         847 LEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELES  898 (1163)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444444444444555556666666667777777777777777777654

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=97.42  E-value=0.029  Score=63.48  Aligned_cols=153  Identities=24%  Similarity=0.280  Sum_probs=94.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHh
Q 004661          465 LEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRL  544 (739)
Q Consensus       465 LqQhIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArl  544 (739)
                      ||..++++-+||-.|+.....-.+-+++|-.+++.|       ...+...++++++|+++.+.-....+.+..|++-...
T Consensus       141 lQ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l-------~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~  213 (546)
T PF07888_consen  141 LQNQLEECQKEKEELLKENEQLEEEVEQLREEVERL-------EAELEQEEEEMEQLKQQQKELTESSEELKEERESLKE  213 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            788899988999988877766555555555555555       4455555666666666666666667788899999888


Q ss_pred             hchhHHHHHHHHHHHHHhHHHHHHHHh-----hhHHHhHHHhh--hhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHH
Q 004661          545 ECNAADERAKILASEVIGLEEKALRLR-----SNELKLERQLE--NSQSEISSYKKKISSLEKERQDFQSTIEALQEEKK  617 (739)
Q Consensus       545 e~~aA~ERak~LAAEVV~LEEk~LqLR-----S~eLKlErele--~l~~E~~s~~rqvsslekeR~~lqs~i~ALQEEKK  617 (739)
                      ....+..|.+.|-.++..|..+....-     -.+++.+++..  .++.++..+..++.....++..++.-+++|.++-+
T Consensus       214 q~~e~~~ri~~LEedi~~l~qk~~E~e~~~~~lk~~~~elEq~~~eLk~rLk~~~~~~~~~~~~~~~~~~e~e~LkeqLr  293 (546)
T PF07888_consen  214 QLAEARQRIRELEEDIKTLTQKEKEQEKELDKLKELKAELEQLEAELKQRLKETVVQLKQEETQAQQLQQENEALKEQLR  293 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Confidence            888889999888888888877774321     11222222211  12233333333443333344445555555555555


Q ss_pred             HHHHHHH
Q 004661          618 MMQSKLR  624 (739)
Q Consensus       618 lLqskLR  624 (739)
                      .++.+|.
T Consensus       294 ~~qe~lq  300 (546)
T PF07888_consen  294 SAQEQLQ  300 (546)
T ss_pred             HHHHHHH
Confidence            5555443

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PRK11637 AmiB activator; Provisional

Probab=97.37  E-value=0.029  Score=59.95  Aligned_cols=76  Identities=18%  Similarity=0.245  Sum_probs=49.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 004661          460 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESF  535 (739)
Q Consensus       460 ~~faaLqQhIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~  535 (739)
                      .+...+++-|.++..++-.++..|....+=.+.+..+-..+....+.....+.+|+.++++++.+|..+...+...
T Consensus        54 ~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~r  129 (428)
T PRK11637         54 QDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQ  129 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566677777777777777777766666655566666666666666666667777777776666666665555443

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=97.27  E-value=0.64  Score=54.13  Aligned_cols=166  Identities=21%  Similarity=0.269  Sum_probs=89.6

Q ss_pred             CCchhhHHHHHHHHHHHHHHH---HHHHHHHHHH-----------HHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHH
Q 004661          456 TKHNEDFAALEQHIEDLTQEK---FALQRSLEAS-----------RALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKL  521 (739)
Q Consensus       456 ~~~~~~faaLqQhIeDLT~EK---faLqR~L~~q-----------~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqL  521 (739)
                      ....+....||+-|+-|-.|-   ..+...|..+           +--.++|-.||+.|-.+++.....-.+-|.-|.+|
T Consensus       414 ~~~~~a~~rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~L  493 (697)
T PF09726_consen  414 NSEPDAISRLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQL  493 (697)
T ss_pred             ccChHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445667778888887765441   1112222222           22245577788888888887766666666555555


Q ss_pred             HHHHHH---HHHHhh-hhHHHHHHHHhhc-hhHH----------HHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhH
Q 004661          522 QEEIKV---QLVELE-SFRNEYANVRLEC-NAAD----------ERAKILASEVIGLEEKALRLRSNELKLERQLENSQS  586 (739)
Q Consensus       522 q~Ei~a---Q~~~le-s~~~ErdaArle~-~aA~----------ERak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~  586 (739)
                      ++.++.   ++..+| .+.+||-+-+.+. .+|.          |-+..+-.-.=.||..+.+||.+.-..|.++..+..
T Consensus       494 EkrL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~  573 (697)
T PF09726_consen  494 EKRLAEERRQRASLEKQLQEERKARKEEEEKAARALAQAQATRQECAESCRQRRRQLESELKKLRRELKQKEEQIRELES  573 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            544433   333333 2344543322211 1111          112223333445666666666555555555555666


Q ss_pred             HHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHH
Q 004661          587 EISSYKKKISSLEKERQDFQSTIEALQEEKKMMQS  621 (739)
Q Consensus       587 E~~s~~rqvsslekeR~~lqs~i~ALQEEKKlLqs  621 (739)
                      |+..++.....-++|...|.+.|.+|||+.-+|..
T Consensus       574 ~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~  608 (697)
T PF09726_consen  574 ELQELRKYEKESEKDTEVLMSALSAMQDKNQHLEN  608 (697)
T ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            66555554222456777888888899987755543

; GO: 0016021 integral to membrane

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=97.24  E-value=0.19  Score=57.07  Aligned_cols=92  Identities=24%  Similarity=0.354  Sum_probs=66.7

Q ss_pred             hHHHHHHHHhhchhHHHHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHH
Q 004661          535 FRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQE  614 (739)
Q Consensus       535 ~~~ErdaArle~~aA~ERak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQE  614 (739)
                      ...|+.+.+.....-.+|...|..|+--+|+-...=|++.-||++++-..+   +.-+=|++-..+++++|++.+.-+|-
T Consensus       355 ~~qEk~~l~~~~e~~k~~ie~L~~el~~~e~~lqEer~E~qkL~~ql~ke~---D~n~vqlsE~~rel~Elks~lrv~qk  431 (546)
T PF07888_consen  355 WAQEKQALQHSAEADKDEIEKLSRELQMLEEHLQEERMERQKLEKQLGKEK---DCNRVQLSENRRELQELKSSLRVAQK  431 (546)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            355666666555555578899999999999999999999999999995433   22233777777777777777766665


Q ss_pred             HH--------------HHHHHHHHhhhCC
Q 004661          615 EK--------------KMMQSKLRKASGS  629 (739)
Q Consensus       615 EK--------------KlLqskLRka~a~  629 (739)
                      ||              +.|..||.+.+..
T Consensus       432 EKEql~~EkQeL~~yi~~Le~r~~~~~~~  460 (546)
T PF07888_consen  432 EKEQLQEEKQELLEYIERLEQRLDKVADE  460 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            55              6677777777653

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=97.22  E-value=0.047  Score=65.50  Aligned_cols=135  Identities=18%  Similarity=0.258  Sum_probs=90.1

Q ss_pred             HHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHH-------HHHHHHHhhhhHHHHHHHHhhchhHHHHHHHHH
Q 004661          485 ASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEE-------IKVQLVELESFRNEYANVRLECNAADERAKILA  557 (739)
Q Consensus       485 ~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~E-------i~aQ~~~les~~~ErdaArle~~aA~ERak~LA  557 (739)
                      ..++-.+..-..++++..+++.--.++++++++.+.--.|       ++..+.+...+..|+..+.....+...+-..|-
T Consensus       299 ~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~  378 (1074)
T KOG0250|consen  299 TLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLE  378 (1074)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444445556666666666555555555544444333       344444444445555555555666666666666


Q ss_pred             HHHHhHHHHH-HHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHH
Q 004661          558 SEVIGLEEKA-LRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMM  619 (739)
Q Consensus       558 AEVV~LEEk~-LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQEEKKlL  619 (739)
                      -.|..++++. ..+-+.-.+.|.+++.|..|++.++-++.+|..+++++..-+...+||+-.+
T Consensus       379 k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i  441 (1074)
T KOG0250|consen  379 KQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHI  441 (1074)
T ss_pred             HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            6666666666 6666677888899999999999999999999999999999998888888443

>PHA02562 46 endonuclease subunit; Provisional

Probab=97.19  E-value=0.071  Score=57.54  Aligned_cols=38  Identities=24%  Similarity=0.377  Sum_probs=22.1

Q ss_pred             hHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHH
Q 004661          577 LERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQE  614 (739)
Q Consensus       577 lErele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQE  614 (739)
                      +++.+.+++.++..++..+.++.+++..++..|+.|++
T Consensus       335 ~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~  372 (562)
T PHA02562        335 QSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQA  372 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34455555555666666666666666666666666553

>PHA02562 46 endonuclease subunit; Provisional

Probab=97.16  E-value=0.09  Score=56.77  Aligned_cols=67  Identities=9%  Similarity=0.162  Sum_probs=31.1

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHH
Q 004661          549 ADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEE  615 (739)
Q Consensus       549 A~ERak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQEE  615 (739)
                      ..++.+.+..++..|++++..+|..--.+.++...++.++++++.....++.+-..+..-++.++.+
T Consensus       328 ~~~~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~  394 (562)
T PHA02562        328 IMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKT  394 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHH
Confidence            3333444444444444444444444434444444455555555444444444444444444444443

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=97.15  E-value=0.071  Score=64.05  Aligned_cols=166  Identities=23%  Similarity=0.333  Sum_probs=104.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 004661          460 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAE-----NSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELES  534 (739)
Q Consensus       460 ~~faaLqQhIeDLT~EKfaLqR~L~~q~~l~EsLA~E-----NsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les  534 (739)
                      .+...|+.+|+|+ +||+.-.+.++--.+.-++|-++     .=...+.||.|...+.-.++.+..|++.+.-+...++.
T Consensus       235 e~i~~l~k~i~e~-~e~~~~~~~~e~~~~~l~~Lk~k~~W~~V~~~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~  313 (1074)
T KOG0250|consen  235 EEIKNLKKKIKEE-EEKLDNLEQLEDLKENLEQLKAKMAWAWVNEVERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEE  313 (1074)
T ss_pred             hhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455555566554 34444333333333333333322     23457889999988888888888887777766666555


Q ss_pred             h--------------HHHHHHHHhhchhHHHHHHHHHHHHHhHHHHHH-------HHhhhHHHhHHHhhhhhHHH-----
Q 004661          535 F--------------RNEYANVRLECNAADERAKILASEVIGLEEKAL-------RLRSNELKLERQLENSQSEI-----  588 (739)
Q Consensus       535 ~--------------~~ErdaArle~~aA~ERak~LAAEVV~LEEk~L-------qLRS~eLKlErele~l~~E~-----  588 (739)
                      +              +.|.++---+|..|.+..+.+..||..|++++.       ++|+..=.++|++..++.+.     
T Consensus       314 ~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~  393 (1074)
T KOG0250|consen  314 ARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELG  393 (1074)
T ss_pred             HhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            5              456666667888899999999999999987654       55555556666666665544     


Q ss_pred             ---HHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 004661          589 ---SSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA  626 (739)
Q Consensus       589 ---~s~~rqvsslekeR~~lqs~i~ALQEEKKlLqskLRka  626 (739)
                         ...+.++..|+++.-.|+..+..|.+|...++.+++..
T Consensus       394 ~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~  434 (1074)
T KOG0250|consen  394 SELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEE  434 (1074)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence               33344455566666666666666666666666666554

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=97.14  E-value=0.035  Score=57.98  Aligned_cols=10  Identities=10%  Similarity=0.461  Sum_probs=5.6

Q ss_pred             ccccccCCch
Q 004661          450 QHGFYSTKHN  459 (739)
Q Consensus       450 ~hdF~S~~~~  459 (739)
                      |.+||+.+.+
T Consensus       106 f~EY~~a~~d  115 (325)
T PF08317_consen  106 FREYYTADPD  115 (325)
T ss_pred             HHHHHcCCHH
Confidence            6666665443

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=97.11  E-value=0.12  Score=53.09  Aligned_cols=136  Identities=16%  Similarity=0.254  Sum_probs=62.9

Q ss_pred             HhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHHHH-------HHHHHhHHHHH
Q 004661          495 AENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKIL-------ASEVIGLEEKA  567 (739)
Q Consensus       495 ~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak~L-------AAEVV~LEEk~  567 (739)
                      .+...+..+.+.-...+.++..+++.++.+++.....++.+..+++.++....    |.+.|       ..++...+.++
T Consensus       130 ~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l~~~~~~~~----~~~~L~~~g~is~~~~~~~~~~~  205 (423)
T TIGR01843       130 GQQSLFESRKSTLRAQLELILAQIKQLEAELAGLQAQLQALRQQLEVISEELE----ARRKLKEKGLVSRLELLELERER  205 (423)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHcCCCCHHHHHHHHHHH
Confidence            33333444444444444555555555555555444444444444444443222    22222       22333444455


Q ss_pred             HHHhhhHHHhHHHhhhhhHHHHHHHHHhhhH--------HHhhhhHHHHHHHHHHHHHHHHHHHHh----hhCCCCccc
Q 004661          568 LRLRSNELKLERQLENSQSEISSYKKKISSL--------EKERQDFQSTIEALQEEKKMMQSKLRK----ASGSGKSID  634 (739)
Q Consensus       568 LqLRS~eLKlErele~l~~E~~s~~rqvssl--------ekeR~~lqs~i~ALQEEKKlLqskLRk----a~a~~k~~~  634 (739)
                      .+++.+...++.++..++.++..++.++..+        ..++..++..+..++.+...++.+|.+    |+..|....
T Consensus       206 ~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~~i~AP~dG~V~~  284 (423)
T TIGR01843       206 AEAQGELGRLEAELEVLKRQIDELQLERQQIEQTFREEVLEELTEAQARLAELRERLNKARDRLQRLIIRSPVDGTVQS  284 (423)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcEEECCCCcEEEE
Confidence            5555555555555555555555554444332        223344444455555444554444443    455666544

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>TIGR00606 rad50 rad50

Probab=97.03  E-value=0.064  Score=65.00  Aligned_cols=77  Identities=14%  Similarity=0.201  Sum_probs=40.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 004661          460 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEY  539 (739)
Q Consensus       460 ~~faaLqQhIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~Er  539 (739)
                      .++..||+-|.++..+|..+...+++.    .+|..+-..|...-++++..+..++.+++-|..++..-...++.++.+.
T Consensus       857 ~eI~~Lq~ki~el~~~klkl~~~l~~r----~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  932 (1311)
T TIGR00606       857 EQIQHLKSKTNELKSEKLQIGTNLQRR----QQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSK  932 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence            334444444444455555554433322    3334444455555566666666666666666666666555555554433


Q ss_pred             H
Q 004661          540 A  540 (739)
Q Consensus       540 d  540 (739)
                      .
T Consensus       933 ~  933 (1311)
T TIGR00606       933 E  933 (1311)
T ss_pred             H
Confidence            3

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=96.99  E-value=0.29  Score=57.23  Aligned_cols=168  Identities=22%  Similarity=0.295  Sum_probs=128.3

Q ss_pred             cccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHH-------------
Q 004661          451 HGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSE-------------  517 (739)
Q Consensus       451 hdF~S~~~~~~faaLqQhIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~d-------------  517 (739)
                      -|-+|--.-.++..|+|-+.-+-.||-+|...|+.+|.-.+.=..+-+..+++.|..+..|++|+..             
T Consensus       256 ~DLfSEl~~~EiqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~aL~~l~~~ke~~~~~d~~  335 (717)
T PF09730_consen  256 SDLFSELNLSEIQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQLDALRKLQEDKEQQSAEDSE  335 (717)
T ss_pred             chhhhhcchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhcc
Confidence            4667777788999999999999999999999999999988888888888888889888888888871             


Q ss_pred             ------------------HHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHHHHHHHHHhHHHHHHHHhhhHHHhHH
Q 004661          518 ------------------MEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLER  579 (739)
Q Consensus       518 ------------------mEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak~LAAEVV~LEEk~LqLRS~eLKlEr  579 (739)
                                        ++-|+....+-..++..++.|..+.+..+....++.+.   |--.++.++..|......+++
T Consensus       336 ~~~~s~~d~~~ye~Di~~~eiLe~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~~~~~---ek~~~~~e~q~L~ekl~~lek  412 (717)
T PF09730_consen  336 KERDSHEDGDYYEVDINGLEILECKYKVAVSEVIQLKAELKALKSKYNELEERYKQ---EKDRLESEVQNLKEKLMSLEK  412 (717)
T ss_pred             cccccccccchhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence                              34455666666666777777777777777776665544   223455555555555566677


Q ss_pred             HhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHH
Q 004661          580 QLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQS  621 (739)
Q Consensus       580 ele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQEEKKlLqs  621 (739)
                      ....-+..+..+++.+..+.+-.++.+..+.+.|+|-.-+-.
T Consensus       413 ~~re~qeri~~LE~ELr~l~~~A~E~q~~LnsAQDELvtfSE  454 (717)
T PF09730_consen  413 SSREDQERISELEKELRALSKLAGESQGSLNSAQDELVTFSE  454 (717)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            666667788888899999999899988888888888744433

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>TIGR00606 rad50 rad50

Probab=96.96  E-value=0.057  Score=65.39  Aligned_cols=162  Identities=12%  Similarity=0.181  Sum_probs=96.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH-------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 004661          464 ALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSL-------TDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFR  536 (739)
Q Consensus       464 aLqQhIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaL-------Td~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~  536 (739)
                      -|+..|+.+....-.+...+....+..+.|..-++..       ...+......+.++.++++.++.++......++.+.
T Consensus       699 ~L~~~~~~~p~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~l~~~eip~l~~~l~~le~~l~~~~~~le~~~~~l~~~~  778 (1311)
T TIGR00606       699 DLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIM  778 (1311)
T ss_pred             HHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5556666655556677777777777777766443322       233344444555555555555555555555555555


Q ss_pred             HHHHHHHhhchhHHHHHHHHHHHHHhHHHHHHHHhhhHHH--hHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHH
Q 004661          537 NEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELK--LERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQE  614 (739)
Q Consensus       537 ~ErdaArle~~aA~ERak~LAAEVV~LEEk~LqLRS~eLK--lErele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQE  614 (739)
                      .+.+.+.. +-.-..-.-.+..|+..|+.+|-+|....--  ..+.++.+..++..+++++..+.++...++...+.+++
T Consensus       779 ~~~~~~es-L~~~v~~i~r~~~ei~~l~~qie~l~~~l~~~~~~~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~  857 (1311)
T TIGR00606       779 PEEESAKV-CLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQE  857 (1311)
T ss_pred             HhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555543 2222333445578888888888877543221  12456677777777777777776666666666666666


Q ss_pred             HHHHHHHHHHhh
Q 004661          615 EKKMMQSKLRKA  626 (739)
Q Consensus       615 EKKlLqskLRka  626 (739)
                      +-+.||.++.++
T Consensus       858 eI~~Lq~ki~el  869 (1311)
T TIGR00606       858 QIQHLKSKTNEL  869 (1311)
T ss_pred             HHHHHHHHHHHH
Confidence            666666665553

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=96.90  E-value=0.11  Score=65.78  Aligned_cols=156  Identities=21%  Similarity=0.243  Sum_probs=106.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHH--------------HHHHHHHHH
Q 004661          466 EQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQ--------------EEIKVQLVE  531 (739)
Q Consensus       466 qQhIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq--------------~Ei~aQ~~~  531 (739)
                      .|+++++-++|--|+.-|+..++..+-+...+..|-...|+..+.+.-+..++++..              .-+.--.-.
T Consensus      1371 ~~~~eelee~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d~~~d~~~~~~~~~~le~k~k~f~k~l~e~k~~ 1450 (1930)
T KOG0161|consen 1371 LQRLEELEELKKKLQQRLQELEEQIEAANAKNASLEKAKNRLQQELEDLQLDLERSRAAVAALEKKQKRFEKLLAEWKKK 1450 (1930)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            367899999999999999999999999999999999999996666666665554442              222222233


Q ss_pred             hhhhHHHHHHHHhhchhHHHHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHH
Q 004661          532 LESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEA  611 (739)
Q Consensus       532 les~~~ErdaArle~~aA~ERak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i~A  611 (739)
                      .+.+..|+|+|+.+..+.....       ..|..++..+.-.-=-++|+-..+..++..+..++..+.|..++|+....+
T Consensus      1451 ~e~l~~Eld~aq~e~r~~~tel-------~kl~~~lee~~e~~e~l~renk~l~~ei~dl~~~~~e~~k~v~elek~~r~ 1523 (1930)
T KOG0161|consen 1451 LEKLQAELDAAQRELRQLSTEL-------QKLKNALEELLEQLEELRRENKNLSQEIEDLEEQKDEGGKRVHELEKEKRR 1523 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444566666666555544444       444444444433233345566667777777777777777777777777777


Q ss_pred             HHHHHHHHHHHHHhhhC
Q 004661          612 LQEEKKMMQSKLRKASG  628 (739)
Q Consensus       612 LQEEKKlLqskLRka~a  628 (739)
                      |..|+--||.+|-.+-+
T Consensus      1524 le~e~~elQ~aLeElE~ 1540 (1930)
T KOG0161|consen 1524 LEQEKEELQAALEELEA 1540 (1930)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            77777777777766655

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=96.89  E-value=0.26  Score=50.67  Aligned_cols=117  Identities=19%  Similarity=0.292  Sum_probs=57.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHHHHHHHHHhH----HHHHHHHhhhHHHhHHHhhhhhH
Q 004661          511 VNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGL----EEKALRLRSNELKLERQLENSQS  586 (739)
Q Consensus       511 v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak~LAAEVV~L----EEk~LqLRS~eLKlErele~l~~  586 (739)
                      ...++.+++++++++......++.+..+...++.....+.++-.. ....+.-    +.+.+..+.....++.++..++.
T Consensus       139 ~~~~~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l~~~~~~~~~-~~~L~~~g~is~~~~~~~~~~~~~~~~~l~~~~~  217 (423)
T TIGR01843       139 KSTLRAQLELILAQIKQLEAELAGLQAQLQALRQQLEVISEELEA-RRKLKEKGLVSRLELLELERERAEAQGELGRLEA  217 (423)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHcCCCCHHHHHHHHHHHHHHHhHHHHHHH
Confidence            334445555555555555555555555555554444444432111 1111111    34445555555666666666666


Q ss_pred             HHHHHHHHhhhHHHhhhhHH--------HHHHHHHHHHHHHHHHHHhhhC
Q 004661          587 EISSYKKKISSLEKERQDFQ--------STIEALQEEKKMMQSKLRKASG  628 (739)
Q Consensus       587 E~~s~~rqvsslekeR~~lq--------s~i~ALQEEKKlLqskLRka~a  628 (739)
                      ++..++.++..++.+...+.        .-+..++.+...++.+|..+-.
T Consensus       218 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~  267 (423)
T TIGR01843       218 ELEVLKRQIDELQLERQQIEQTFREEVLEELTEAQARLAELRERLNKARD  267 (423)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666666665555543322        2233444555555555555443

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=96.81  E-value=0.11  Score=63.16  Aligned_cols=161  Identities=23%  Similarity=0.272  Sum_probs=104.3

Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH----hHHHHHHHHHHHHHHHHHHHHHHH--
Q 004661          457 KHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQ----QRSVVNQLKSEMEKLQEEIKVQLV--  530 (739)
Q Consensus       457 ~~~~~faaLqQhIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNq----Q~~~v~qLk~dmEqLq~Ei~aQ~~--  530 (739)
                      ...+.-+-|++.|+.++.+...|+|   ++.+|++.=..|+......-++    .-..+.+++++|+-+++..+.-+.  
T Consensus       462 ~~~~~~keL~e~i~~lk~~~~el~~---~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~  538 (1317)
T KOG0612|consen  462 ELEEMDKELEETIEKLKSEESELQR---EQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSL  538 (1317)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455667899999999999999998   4444444433333322222222    233455566666666555544433  


Q ss_pred             -HhhhhHHHHHHHHhhchhHHH--------------HHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHh
Q 004661          531 -ELESFRNEYANVRLECNAADE--------------RAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKI  595 (739)
Q Consensus       531 -~les~~~ErdaArle~~aA~E--------------Rak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqv  595 (739)
                       .+..++.+.+.+.+++.+..|              +-+.+..++=.+|+++-.|-..+.|+-++..+++.+.+.++++-
T Consensus       539 ~kv~~~rk~le~~~~d~~~e~~~~~kl~~~~~e~~~~iq~~~e~~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~~  618 (1317)
T KOG0612|consen  539 EKVNSLRKQLEEAELDMRAESEDAGKLRKHSKELSKQIQQELEENRDLEDKLSLLEESKSKLSKENKKLRSELEKERRQR  618 (1317)
T ss_pred             hhHHHHHHHHHHhhhhhhhhHHHHhhHhhhhhhhhHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             334446666666666664444              23334456668999999999999999999999999999998887


Q ss_pred             hhHHHhhhhHHHHHHHHHHHHHHHH
Q 004661          596 SSLEKERQDFQSTIEALQEEKKMMQ  620 (739)
Q Consensus       596 sslekeR~~lqs~i~ALQEEKKlLq  620 (739)
                      -.+..++.+++..|.-||+.-+.+.
T Consensus       619 ~~~~e~~~~l~~~i~sL~~~~~~~~  643 (1317)
T KOG0612|consen  619 TEISEIIAELKEEISSLEETLKAGK  643 (1317)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHhhh
Confidence            7777777766666666664443333

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=96.75  E-value=0.67  Score=46.33  Aligned_cols=162  Identities=22%  Similarity=0.321  Sum_probs=93.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 004661          460 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEY  539 (739)
Q Consensus       460 ~~faaLqQhIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~Er  539 (739)
                      .+++.|+.+|+++..|--.|.+---++.+--.-.-+.+..|-+--..-...|-.|+..+.+.++...+---.+...-+|.
T Consensus        19 n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el   98 (194)
T PF15619_consen   19 NELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEEL   98 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46778888888888888777766666555445554444444444444444555555555554444333222222222222


Q ss_pred             HHHHhhchh---------HHHHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHH
Q 004661          540 ANVRLECNA---------ADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIE  610 (739)
Q Consensus       540 daArle~~a---------A~ERak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i~  610 (739)
                      -..+-.+.+         -.|| ..|..++-.|+.++..---.--.|++.++-..   ..+++++.+-.+--.+++..+.
T Consensus        99 ~k~~~~l~~L~~L~~dknL~eR-eeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~---k~~~rql~~e~kK~~~~~~~~~  174 (194)
T PF15619_consen   99 LKTKDELKHLKKLSEDKNLAER-EELQRKLSQLEQKLQEKEKKIQELEKQLELEN---KSFRRQLASEKKKHKEAQEEVK  174 (194)
T ss_pred             HHHHHHHHHHHHHHHcCCchhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHH
Confidence            222222211         1222 23344444444444443333344555554444   6777777777777889999999


Q ss_pred             HHHHHHHHHHHHHHh
Q 004661          611 ALQEEKKMMQSKLRK  625 (739)
Q Consensus       611 ALQEEKKlLqskLRk  625 (739)
                      .|++|-..|+++|..
T Consensus       175 ~l~~ei~~L~~klkE  189 (194)
T PF15619_consen  175 SLQEEIQRLNQKLKE  189 (194)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999999874

>PRK09039 hypothetical protein; Validated

Probab=96.73  E-value=0.21  Score=53.14  Aligned_cols=66  Identities=23%  Similarity=0.266  Sum_probs=33.5

Q ss_pred             hHHHHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHH
Q 004661          548 AADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQ  613 (739)
Q Consensus       548 aA~ERak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQ  613 (739)
                      .+..|+..|..+...+....-+.+....+|..|++.|+..+.+++.++.++++.-.+.+.-|+.|+
T Consensus       113 ~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~  178 (343)
T PRK09039        113 AAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLG  178 (343)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444455555555555555555555555555555555555555555555555554444444444443

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=96.69  E-value=0.25  Score=47.00  Aligned_cols=128  Identities=19%  Similarity=0.295  Sum_probs=65.0

Q ss_pred             HHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHHHHHHHHHhHH
Q 004661          485 ASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLE  564 (739)
Q Consensus       485 ~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak~LAAEVV~LE  564 (739)
                      .+.+-++.|...+-.|-+++-+....|..|+..+.+|+.+|..-...|..+..-.+.+-.....+.    .|---|-.||
T Consensus        11 ~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E----~l~rriq~LE   86 (143)
T PF12718_consen   11 NAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAE----QLNRRIQLLE   86 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHH----HHHhhHHHHH
Confidence            333444444444444444444444555555555555555444333333333222222211111111    4445566666


Q ss_pred             HHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHH
Q 004661          565 EKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEK  616 (739)
Q Consensus       565 Ek~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQEEK  616 (739)
                      +.+-+.-..---....+..+...+..+.|+|..|+.+|..+..-++.|...-
T Consensus        87 eele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~  138 (143)
T PF12718_consen   87 EELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEKY  138 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            6666554444444455555666777777777777777777777666665443

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>PRK03918 chromosome segregation protein; Provisional

Probab=96.69  E-value=0.44  Score=54.43  Aligned_cols=28  Identities=14%  Similarity=0.156  Sum_probs=12.9

Q ss_pred             HhhchhHHHHHHHHHHHHHhHHHHHHHH
Q 004661          543 RLECNAADERAKILASEVIGLEEKALRL  570 (739)
Q Consensus       543 rle~~aA~ERak~LAAEVV~LEEk~LqL  570 (739)
                      ...+..-.++.+.+-.|+..|++++-+|
T Consensus       251 ~~~~~~l~~~i~~l~~el~~l~~~l~~l  278 (880)
T PRK03918        251 EGSKRKLEEKIRELEERIEELKKEIEEL  278 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333344444555555555555444

>PRK03918 chromosome segregation protein; Provisional

Probab=96.65  E-value=0.38  Score=54.92  Aligned_cols=40  Identities=20%  Similarity=0.125  Sum_probs=16.9

Q ss_pred             hhhhHHHHHHHHhhchhHHHHHHHHHHHHHhHHHHHHHHh
Q 004661          532 LESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLR  571 (739)
Q Consensus       532 les~~~ErdaArle~~aA~ERak~LAAEVV~LEEk~LqLR  571 (739)
                      ++.+..++...+..+....+....|-.++-.|++++-.|+
T Consensus       614 l~~~~~~l~~~~~~l~~~~~~i~~l~~~i~~l~~~~~~l~  653 (880)
T PRK03918        614 LEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELE  653 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333334444444444444444444444444444444443

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=96.61  E-value=0.91  Score=46.11  Aligned_cols=34  Identities=29%  Similarity=0.489  Sum_probs=23.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004661          460 EDFAALEQHIEDLTQEKFALQRSLEASRALSESL  493 (739)
Q Consensus       460 ~~faaLqQhIeDLT~EKfaLqR~L~~q~~l~EsL  493 (739)
                      .+...|.+.|++++.||-.|+-.+...+.-++.+
T Consensus        54 ~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~   87 (312)
T PF00038_consen   54 EELRELRRQIDDLSKEKARLELEIDNLKEELEDL   87 (312)
T ss_dssp             HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHH
Confidence            4556677888888888877777666665555554

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=96.58  E-value=1.2  Score=51.34  Aligned_cols=217  Identities=23%  Similarity=0.303  Sum_probs=121.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH----------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 004661          467 QHIEDLTQEKFALQRSLEASRALSESLAAENSS----------LTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFR  536 (739)
Q Consensus       467 QhIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsa----------LTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~  536 (739)
                      +.++.|.-+|..+.|||.+=++|-++|+.=-.+          ||..-----++..+|...+.+|+.++..-...++.-.
T Consensus       143 kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~  222 (617)
T PF15070_consen  143 KLLEQLQSDKATASRALSQNRELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELKS  222 (617)
T ss_pred             HHHhhhcccchHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            445556667778889999988888888764332          3333322333344555555555544444333333332


Q ss_pred             HHHHHHHhh-------chhHHHHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHH
Q 004661          537 NEYANVRLE-------CNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTI  609 (739)
Q Consensus       537 ~ErdaArle-------~~aA~ERak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i  609 (739)
                      .|..+.+..       ......-.+-||+|-=.|-.+++.-       ...++.++.+-...+.++.-+-+|=+..+-.+
T Consensus       223 qE~~~Lq~q~dq~~~~Lqqy~a~~q~l~~e~e~L~~q~l~Q-------tql~d~lq~eE~q~~~~~E~~~~ELq~~qe~L  295 (617)
T PF15070_consen  223 QEAQSLQEQRDQYLGHLQQYVAAYQQLASEKEELHKQLLQQ-------TQLMDRLQHEESQGKVQLEMAHQELQEAQEHL  295 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence            232222221       1111111245565555554443321       11123344333344444455555556677788


Q ss_pred             HHHHHHHHHHHHHHHhhhCCCCccccCCCcccccCcccccccccccCCCCCCCCCCCcCCCCCCCCCCCCCCcCCccccc
Q 004661          610 EALQEEKKMMQSKLRKASGSGKSIDFGKTAASTVNASTSTEDLAITDTTLDNSNQDTHDDASLPRIDASGSTLLPESGRL  689 (739)
Q Consensus       610 ~ALQEEKKlLqskLRka~a~~k~~~~~~~s~~~~DaSTsTedL~~~~~~~~sS~~e~~~s~s~~~~~~~~~~~~pe~g~~  689 (739)
                      +++..+-..|+..|+.++..|-                        .+..++ +.+  ...                   
T Consensus       296 ea~~qqNqqL~~qls~~~~~~e------------------------g~~~~~-~~~--~ee-------------------  329 (617)
T PF15070_consen  296 EALSQQNQQLQAQLSLMALPGE------------------------GDGLES-ESE--EEE-------------------  329 (617)
T ss_pred             HHHHhhhHHHHHHHHhhcCCCC------------------------Cccccc-ccc--ccc-------------------
Confidence            8888999999999999888661                        011110 000  000                   


Q ss_pred             cccccccccchhh---HHHhhhHHHHHHHHHHhHHHHHHHHHHhhhhcccC
Q 004661          690 ALEGLAVNIPHDQ---MRMIHNINALISELALEKEELVQALSSELAQSSKL  737 (739)
Q Consensus       690 ~~~~~~~siP~Dq---mr~I~nIn~lisela~Ekeel~~aL~~Ess~~s~l  737 (739)
                       .+-...+||.|.   =.|...+|+.+..+..|+.+|-+.|...-..|-.|
T Consensus       330 -~~~~~~~ipEd~es~E~m~~f~~~a~~~~eeEr~~L~~qL~eqk~~~q~L  379 (617)
T PF15070_consen  330 -APQPMPSIPEDLESREAMVEFFNSALAQAEEERARLRRQLEEQKVQCQHL  379 (617)
T ss_pred             -ccCcCcccccccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHh
Confidence             011125677774   46788999999999999999999998887777544

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=96.58  E-value=0.19  Score=56.21  Aligned_cols=147  Identities=19%  Similarity=0.278  Sum_probs=118.4

Q ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHHH
Q 004661          479 LQRSLEASRALSESLAAENSSLTDSYN---QQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKI  555 (739)
Q Consensus       479 LqR~L~~q~~l~EsLA~ENsaLTd~yN---qQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak~  555 (739)
                      +.+.|...++..+.|..|-+.|..+|-   .-...+.+++.+++.++.++..-...+..-...|...+-++....++-..
T Consensus       315 l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~lee  394 (569)
T PRK04778        315 LPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEE  394 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence            556677788888888888888888863   34566778888888888888877777777778899999999999999999


Q ss_pred             HHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhh--HHHhhhhHHHHHHHHHHHHHHHHHHHHh
Q 004661          556 LASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISS--LEKERQDFQSTIEALQEEKKMMQSKLRK  625 (739)
Q Consensus       556 LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvss--lekeR~~lqs~i~ALQEEKKlLqskLRk  625 (739)
                      +-.+...+.+.+-.||..|..++..++.++..++.+++.+..  |-.--......+..++++-+.|..+|.+
T Consensus       395 ie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l~k~~lpgip~~y~~~~~~~~~~i~~l~~~L~~  466 (569)
T PRK04778        395 IEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYLEKSNLPGLPEDYLEMFFEVSDEIEALAEELEE  466 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHHHHhcc
Confidence            999999999999999999999999999999988888877762  1122245666777778888888887766

>smart00787 Spc7 Spc7 kinetochore protein

Probab=96.58  E-value=0.16  Score=53.79  Aligned_cols=44  Identities=23%  Similarity=0.269  Sum_probs=20.7

Q ss_pred             HhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHH
Q 004661          570 LRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQ  613 (739)
Q Consensus       570 LRS~eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQ  613 (739)
                      .|..---++.+++.+...|.....+...+..+=++++..++.++
T Consensus       223 ~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r  266 (312)
T smart00787      223 KVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCR  266 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            33333344444444555555555444444444445555444444

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=96.53  E-value=0.099  Score=49.75  Aligned_cols=65  Identities=26%  Similarity=0.393  Sum_probs=43.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHHHHHHHHHhHHHHHHHHh
Q 004661          507 QRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLR  571 (739)
Q Consensus       507 Q~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak~LAAEVV~LEEk~LqLR  571 (739)
                      ....+.++..++.++++.+......+..++.++...+.......+|-+.+-.++=.+++++..++
T Consensus        86 ~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~  150 (191)
T PF04156_consen   86 LQQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ  150 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455666677777777777777777777777777776666666666666666666666666666

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=96.51  E-value=0.49  Score=52.82  Aligned_cols=123  Identities=26%  Similarity=0.290  Sum_probs=91.5

Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHHHHHHHHHhHHHHHHHHhhhHH-------
Q 004661          503 SYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNEL-------  575 (739)
Q Consensus       503 ~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak~LAAEVV~LEEk~LqLRS~eL-------  575 (739)
                      ........+.+.+..|+....|+..=+..+++++.|..+.+.+.....+|-....++|..|+.++.++|+.-=       
T Consensus       282 ~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~  361 (522)
T PF05701_consen  282 SLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEE  361 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhc
Confidence            3566677777888888888888888889999999999999999999999999999999999999999987641       


Q ss_pred             -------HhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHh
Q 004661          576 -------KLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRK  625 (739)
Q Consensus       576 -------KlErele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQEEKKlLqskLRk  625 (739)
                             .+-..|+.+..|.+.+++.......|...+...++...-.-+-++.||+-
T Consensus       362 ~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~a  418 (522)
T PF05701_consen  362 KAKEAMSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEA  418 (522)
T ss_pred             chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                   23345555555666666666555555555555555555544555555543

Several sequences in this family are described as being myosin heavy chain-like.

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=96.32  E-value=0.5  Score=60.27  Aligned_cols=92  Identities=22%  Similarity=0.332  Sum_probs=62.6

Q ss_pred             HHHHHHHhhchhHHHHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHH
Q 004661          537 NEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEK  616 (739)
Q Consensus       537 ~ErdaArle~~aA~ERak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQEEK  616 (739)
                      .+......+.-...|+...|..+.=.+|++|..|+...=.+|..+..+..|......++..|+++=..+...+.-|..||
T Consensus       908 ~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~kek  987 (1930)
T KOG0161|consen  908 KELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDENISKLSKEK  987 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444555566666666666667777676666666666667777777777777777777777777788888888


Q ss_pred             HHHHHHHHhhhC
Q 004661          617 KMMQSKLRKASG  628 (739)
Q Consensus       617 KlLqskLRka~a  628 (739)
                      |+|+.++|+...
T Consensus       988 k~lEe~~~~l~~  999 (1930)
T KOG0161|consen  988 KELEERIRELQD  999 (1930)
T ss_pred             HHHHHHHHHHHH
Confidence            888877776543

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=96.27  E-value=1.5  Score=44.17  Aligned_cols=45  Identities=16%  Similarity=0.208  Sum_probs=33.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 004661          462 FAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQ  506 (739)
Q Consensus       462 faaLqQhIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNq  506 (739)
                      ++.|++-||++-..--.++..|..+..-++.+-.|..+|.++...
T Consensus         3 ~~~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~   47 (237)
T PF00261_consen    3 IQQLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQL   47 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            567777777777777777777888877777777777777776644

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=96.27  E-value=0.55  Score=54.76  Aligned_cols=53  Identities=23%  Similarity=0.399  Sum_probs=32.6

Q ss_pred             HHHHHhhhHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 004661          491 ESLAAENSSLTDSY-NQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVR  543 (739)
Q Consensus       491 EsLA~ENsaLTd~y-NqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaAr  543 (739)
                      +-|..--.-|.+.| -.|..+-.++++.+.+|+.+++.|+..+..+..|++..+
T Consensus       539 ~lL~~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~  592 (717)
T PF10168_consen  539 ELLSQATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLR  592 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333334444454 344455566777777777777777777777777766654

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=96.26  E-value=1.4  Score=44.91  Aligned_cols=158  Identities=22%  Similarity=0.320  Sum_probs=97.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 004661          462 FAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYN---QQRSVVNQLKSEMEKLQEEIKVQLVELESFRNE  538 (739)
Q Consensus       462 faaLqQhIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yN---qQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~E  538 (739)
                      ++-|+.-=..|+.|=-.|+|.++..-+.+..|+.|+..|-..+=   +--.....|++++|-|...       +..+-++
T Consensus        10 v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK~l~eEledLk~~-------~~~lEE~   82 (193)
T PF14662_consen   10 VEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKAKALEEELEDLKTL-------AKSLEEE   82 (193)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHH
Confidence            34455555667777788888888888888888888888766553   2222334455555555443       2334444


Q ss_pred             HHHHHhhchhHHHHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHh---------------------hh
Q 004661          539 YANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKI---------------------SS  597 (739)
Q Consensus       539 rdaArle~~aA~ERak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqv---------------------ss  597 (739)
                      +.-..-.|-....-.+.|.+||=.|.+.-.+|-.+.=++.+....|..+...+++||                     ..
T Consensus        83 ~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da~l~e~t~~i~e  162 (193)
T PF14662_consen   83 NRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFESLICQRDAILSERTQQIEE  162 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            444444444455556677777777777666666666666666666655555555554                     33


Q ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 004661          598 LEKERQDFQSTIEALQEEKKMMQSKLRKA  626 (739)
Q Consensus       598 lekeR~~lqs~i~ALQEEKKlLqskLRka  626 (739)
                      |.+-=.+..++.+.|+-||-+|...|+++
T Consensus       163 L~~~ieEy~~~teeLR~e~s~LEeql~q~  191 (193)
T PF14662_consen  163 LKKTIEEYRSITEELRLEKSRLEEQLSQM  191 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            33333455667777788888888888765

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=96.26  E-value=0.35  Score=56.24  Aligned_cols=57  Identities=32%  Similarity=0.392  Sum_probs=29.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 004661          468 HIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEE  524 (739)
Q Consensus       468 hIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~E  524 (739)
                      .|.-|-.|--.|...|+..|.+=+.|=..-..|+..=-.-...+.+|+.+.|+||..
T Consensus       419 a~~rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~K  475 (697)
T PF09726_consen  419 AISRLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNK  475 (697)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHH
Confidence            344455555555566666655555555554444443334455555555555555543

; GO: 0016021 integral to membrane

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=96.23  E-value=0.88  Score=47.28  Aligned_cols=164  Identities=21%  Similarity=0.304  Sum_probs=92.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-------HHHhhhh--HHHH
Q 004661          469 IEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQ-------LVELESF--RNEY  539 (739)
Q Consensus       469 IeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ-------~~~les~--~~Er  539 (739)
                      |..|..+++.|.+-..-.++..+.+-.|-+++-++|=..--.+..|+.++-+++.+|+.-       ...+.++  .-||
T Consensus        12 iq~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~   91 (239)
T COG1579          12 IQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDEREL   91 (239)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHH
Confidence            334555666665555555555555555555665555555555555555555555555433       3333333  5678


Q ss_pred             HHHHhhchhHHHHHHHHHHHHHhHHHHHHHH-------hhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHH
Q 004661          540 ANVRLECNAADERAKILASEVIGLEEKALRL-------RSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEAL  612 (739)
Q Consensus       540 daArle~~aA~ERak~LAAEVV~LEEk~LqL-------RS~eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i~AL  612 (739)
                      .+...+...|.+|...|-.|++.|.++.-.|       +....++|+.+..++   .+.+..+..+.++++.+.+-.+.|
T Consensus        92 ~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~---~~~e~e~~~i~e~~~~~~~~~~~L  168 (239)
T COG1579          92 RALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAE---ARLEEEVAEIREEGQELSSKREEL  168 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888889999999998888888776665544       333344444443333   334444555555555555555444


Q ss_pred             HHH----HHHHHHHHHhhhCCCCcccc
Q 004661          613 QEE----KKMMQSKLRKASGSGKSIDF  635 (739)
Q Consensus       613 QEE----KKlLqskLRka~a~~k~~~~  635 (739)
                      -++    -=-.+.|+|+..-+--.+++
T Consensus       169 ~~~l~~ell~~yeri~~~~kg~gvvpl  195 (239)
T COG1579         169 KEKLDPELLSEYERIRKNKKGVGVVPL  195 (239)
T ss_pred             HHhcCHHHHHHHHHHHhcCCCceEEee
Confidence            433    23456777776633233443

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=96.19  E-value=0.17  Score=52.30  Aligned_cols=122  Identities=27%  Similarity=0.385  Sum_probs=63.2

Q ss_pred             HHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHHHHHHHHHhHHHHHHHHh
Q 004661          492 SLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLR  571 (739)
Q Consensus       492 sLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak~LAAEVV~LEEk~LqLR  571 (739)
                      .|=.++..|..+-+.+...+..++.+++++...+.+-..+++.+..++-+-..+..++.+|-..+            +.+
T Consensus        14 ~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~------------e~k   81 (239)
T COG1579          14 KLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRA------------EEK   81 (239)
T ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHH
Confidence            34444444444444444555555555555555555555555555544444444444444432221            111


Q ss_pred             hhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHh
Q 004661          572 SNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRK  625 (739)
Q Consensus       572 S~eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQEEKKlLqskLRk  625 (739)
                      ....+-++++.-|..|+...+++..+|+.+=.+|...++.|+++...|+.++.+
T Consensus        82 l~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~  135 (239)
T COG1579          82 LSAVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLER  135 (239)
T ss_pred             HhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            244455566666666666666666666666666666666666666655555544

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=96.15  E-value=0.82  Score=51.33  Aligned_cols=156  Identities=14%  Similarity=0.226  Sum_probs=110.8

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 004661          458 HNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRN  537 (739)
Q Consensus       458 ~~~~faaLqQhIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~  537 (739)
                      -..++..|++.|.+.-.-=-.|  .|..+.+.++.+..+-+.|.+.+..-...-..+...+..+...+....-.+..+..
T Consensus       254 i~~~i~~l~~~i~~~~~~l~~l--~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~  331 (569)
T PRK04778        254 IEKEIQDLKEQIDENLALLEEL--DLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKE  331 (569)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            4677888887777732111111  35677788888888888888888888888888888888888888888888889999


Q ss_pred             HHHHHHhhch---hHHHHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHH
Q 004661          538 EYANVRLECN---AADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQE  614 (739)
Q Consensus       538 ErdaArle~~---aA~ERak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQE  614 (739)
                      |.+..++.+.   .-.++.+.+-.++-.|++++..+.-..-+.......+..+...+.+++..+++++.++...|+.|+.
T Consensus       332 Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk  411 (569)
T PRK04778        332 EIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRK  411 (569)
T ss_pred             HHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999998865   3467788888888888888886654444444445556666666666666666666666666666653


Q ss_pred             H
Q 004661          615 E  615 (739)
Q Consensus       615 E  615 (739)
                      +
T Consensus       412 ~  412 (569)
T PRK04778        412 D  412 (569)
T ss_pred             H
Confidence            3

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=96.13  E-value=1.2  Score=46.87  Aligned_cols=41  Identities=22%  Similarity=0.336  Sum_probs=16.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 004661          466 EQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQ  506 (739)
Q Consensus       466 qQhIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNq  506 (739)
                      +.|++.|-.++-.|...+++..++...|.....+|....+.
T Consensus       155 ~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~  195 (325)
T PF08317_consen  155 EENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELEN  195 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444444444444444444433333333

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=96.03  E-value=0.77  Score=43.79  Aligned_cols=131  Identities=18%  Similarity=0.283  Sum_probs=106.0

Q ss_pred             HHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHHHHHHHHH---hHHHH
Q 004661          490 SESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVI---GLEEK  566 (739)
Q Consensus       490 ~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak~LAAEVV---~LEEk  566 (739)
                      ++.|=.|.+.+.+++.+-...+.+|.....+++++|..=.-.+..+-.|.|.++.....+.+..-...--+.   .|..|
T Consensus         2 m~~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rr   81 (143)
T PF12718_consen    2 MQALKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRR   81 (143)
T ss_pred             hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhh
Confidence            356778889999999999999999999999999999999999999999999999888888777665554333   44444


Q ss_pred             HHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 004661          567 ALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKAS  627 (739)
Q Consensus       567 ~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQEEKKlLqskLRka~  627 (739)
                      +..       ||.+|+.+.........++..+.+.-.++.--+.+|..++.-+..|+-.+.
T Consensus        82 iq~-------LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~  135 (143)
T PF12718_consen   82 IQL-------LEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELE  135 (143)
T ss_pred             HHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            443       478888888888888888888888888888888888888777766665543

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=95.99  E-value=0.94  Score=54.19  Aligned_cols=65  Identities=22%  Similarity=0.244  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 004661          464 ALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQ  528 (739)
Q Consensus       464 aLqQhIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ  528 (739)
                      ..+|...+....|+.|-+.+..+|+..+++-..+.+|-=.+++|.-...+-..+-|||++|.+-+
T Consensus       334 ~~~~~~~e~~~~~~~l~~~~~ear~~~~q~~~ql~~le~~~~e~q~~~qe~~~e~eqLr~elaql  398 (980)
T KOG0980|consen  334 QIEQLSREVAQLKAQLENLKEEARRRIEQYENQLLALEGELQEQQREAQENREEQEQLRNELAQL  398 (980)
T ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            45677778888999999999999999999999999999999999999998888889888885443

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=95.96  E-value=2.3  Score=45.94  Aligned_cols=41  Identities=37%  Similarity=0.528  Sum_probs=33.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 004661          463 AALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDS  503 (739)
Q Consensus       463 aaLqQhIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~  503 (739)
                      -.|+--|..|.+|---|...|+.-+.-+..|..||.+|-..
T Consensus        23 ~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~   63 (310)
T PF09755_consen   23 EQLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREA   63 (310)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55777788888888888888888888888999999888653

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=95.96  E-value=1.3  Score=54.82  Aligned_cols=21  Identities=19%  Similarity=0.188  Sum_probs=16.0

Q ss_pred             chhhHHHHHHHHHHHHHHHHH
Q 004661          458 HNEDFAALEQHIEDLTQEKFA  478 (739)
Q Consensus       458 ~~~~faaLqQhIeDLT~EKfa  478 (739)
                      .++..++|++.++.|+.|.-+
T Consensus       761 l~~~l~~l~~r~~~L~~e~~~  781 (1353)
T TIGR02680       761 LARELRALGARQRALADELAG  781 (1353)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh
Confidence            457888888888888888543

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>PRK04863 mukB cell division protein MukB; Provisional

Probab=95.95  E-value=0.41  Score=59.73  Aligned_cols=142  Identities=19%  Similarity=0.252  Sum_probs=77.2

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004661          459 NEDFAALEQHIEDLTQEKFALQRSLEASRA------LSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVEL  532 (739)
Q Consensus       459 ~~~faaLqQhIeDLT~EKfaLqR~L~~q~~------l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~l  532 (739)
                      .+..+.|+.-++.|.+++-.+.+-++...+      -.+.+..+-+.|..+..++...+.+++.+++.++.++..-...+
T Consensus       313 ~diL~ELe~rL~kLEkQaEkA~kyleL~ee~lr~q~ei~~l~~~LeELee~Lee~eeeLeeleeeleeleeEleelEeeL  392 (1486)
T PRK04863        313 ARELAELNEAESDLEQDYQAASDHLNLVQTALRQQEKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEV  392 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455666666677776666555554443322      22344455555666666666666666666666666665555555


Q ss_pred             hhhHHHHHHHHhhchhHHHHHHHHHHHH------------------------HhHHHHHHHHhhhHHHhHHHhhhhhHHH
Q 004661          533 ESFRNEYANVRLECNAADERAKILASEV------------------------IGLEEKALRLRSNELKLERQLENSQSEI  588 (739)
Q Consensus       533 es~~~ErdaArle~~aA~ERak~LAAEV------------------------V~LEEk~LqLRS~eLKlErele~l~~E~  588 (739)
                      +.++.++...+.....+..+...+-..+                        -.+++++.++....+++++++..+..++
T Consensus       393 eeLqeqLaelqqel~elQ~el~q~qq~i~~Le~~~~~~~~~~~SdEeLe~~LenF~aklee~e~qL~elE~kL~~lea~l  472 (1486)
T PRK04863        393 DELKSQLADYQQALDVQQTRAIQYQQAVQALERAKQLCGLPDLTADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAH  472 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555555544444444444333333                        3344555555555555555555555555


Q ss_pred             HHHHHHhhhHHH
Q 004661          589 SSYKKKISSLEK  600 (739)
Q Consensus       589 ~s~~rqvsslek  600 (739)
                      +.++++...+-+
T Consensus       473 eql~~~~~~l~~  484 (1486)
T PRK04863        473 SQFEQAYQLVRK  484 (1486)
T ss_pred             HHHHHHHHHHHH
Confidence            555555544433

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=95.91  E-value=1.6  Score=53.98  Aligned_cols=111  Identities=16%  Similarity=0.263  Sum_probs=61.1

Q ss_pred             ccccccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH-----hHHHHHHHHHHHHHHH
Q 004661          448 ENQHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQ-----QRSVVNQLKSEMEKLQ  522 (739)
Q Consensus       448 e~~hdF~S~~~~~~faaLqQhIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNq-----Q~~~v~qLk~dmEqLq  522 (739)
                      +-..+|.-+.++.++..|.+-|++|.+-+-.|.+.-++-.+| +.+...    -+.||+     .+..+-..+.+++.++
T Consensus       208 ~~l~~~l~~l~~~~i~~l~e~~~~~~~~~~~le~l~~~~~~l-~~i~~~----y~~y~~~~~~~~~~~~~~~~~~~~~~~  282 (1353)
T TIGR02680       208 DALTEALPPLDDDELTDVADALEQLDEYRDELERLEALERAL-RNFLQR----YRRYARTMLRRRATRLRSAQTQYDQLS  282 (1353)
T ss_pred             HHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345677888899999999998888887776665544333333 233222    233333     2233333444455555


Q ss_pred             HHHHHHHHHhhhhHHHHHHHHhhchhHHHHHHHHHHHHHhH
Q 004661          523 EEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGL  563 (739)
Q Consensus       523 ~Ei~aQ~~~les~~~ErdaArle~~aA~ERak~LAAEVV~L  563 (739)
                      .++......++....+++.+........++-..+-.|...|
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~~~~~l  323 (1353)
T TIGR02680       283 RDLGRARDELETAREEERELDARTEALEREADALRTRLEAL  323 (1353)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            55554445555555555555555555555544444444444

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=95.85  E-value=2.5  Score=43.04  Aligned_cols=64  Identities=23%  Similarity=0.430  Sum_probs=27.7

Q ss_pred             HHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhH----HHhhhhHHHHHHHHHHHHHHHHHHH
Q 004661          560 VIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSL----EKERQDFQSTIEALQEEKKMMQSKL  623 (739)
Q Consensus       560 VV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvssl----ekeR~~lqs~i~ALQEEKKlLqskL  623 (739)
                      +-.+-+.+.++|...=.++.+++.++.....+++++..+    ..++..++..|..|..|...|+..+
T Consensus       211 ~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~  278 (312)
T PF00038_consen  211 LESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEM  278 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHH
Confidence            333333344444444444444444444444444444333    2344444555555555554444443

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=95.81  E-value=0.038  Score=53.76  Aligned_cols=52  Identities=23%  Similarity=0.260  Sum_probs=22.1

Q ss_pred             hchhHHHHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhh
Q 004661          545 ECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKIS  596 (739)
Q Consensus       545 e~~aA~ERak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvs  596 (739)
                      ...+-..+-..|-+|+..|+++|..|...--..++-++.+++|+..++-++.
T Consensus       110 ~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~  161 (194)
T PF08614_consen  110 ELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLN  161 (194)
T ss_dssp             ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333334444444444444444444444444444444444444444444444

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>PRK10361 DNA recombination protein RmuC; Provisional

Probab=95.74  E-value=0.98  Score=50.87  Aligned_cols=129  Identities=13%  Similarity=0.214  Sum_probs=70.5

Q ss_pred             HHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhch----hHHHHHHHHHHHHHh
Q 004661          487 RALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECN----AADERAKILASEVIG  562 (739)
Q Consensus       487 ~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~----aA~ERak~LAAEVV~  562 (739)
                      +.+.+.|+.....+. ++++......++..++.++++++..+...+..+.+..++.|....    .-.+--+.|..|.=.
T Consensus        39 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~le~~~~~~~ek~~~l~~~~~~L~~~F~~  117 (475)
T PRK10361         39 EEMVAELSAAKQQIT-QSEHWRAECELLNNEVRSLQSINTSLEADLREVTTRMEAAQQHADDKIRQMINSEQRLSEQFEN  117 (475)
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334445555555544 445555555555555555555555544444444333333222221    111122334455555


Q ss_pred             HHHHHHHHhhhHHHhH------HHhhhhhHHHHHHHHHhhhHHH----hhhhHHHHHHHHHHHH
Q 004661          563 LEEKALRLRSNELKLE------RQLENSQSEISSYKKKISSLEK----ERQDFQSTIEALQEEK  616 (739)
Q Consensus       563 LEEk~LqLRS~eLKlE------rele~l~~E~~s~~rqvsslek----eR~~lqs~i~ALQEEK  616 (739)
                      |=.++++-++..+.-.      .-+.=++..+..|+++|..+++    +|..|...|..|++--
T Consensus       118 LA~~ile~k~~~f~~~~~~~l~~ll~Pl~e~l~~f~~~v~~~~~~~~~~~~~L~~qi~~L~~~n  181 (475)
T PRK10361        118 LANRIFEHSNRRVDEQNRQSLNSLLSPLREQLDGFRRQVQDSFGKEAQERHTLAHEIRNLQQLN  181 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555666655555433      3356678889999999998874    5777777777776533

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=95.72  E-value=0.25  Score=54.81  Aligned_cols=104  Identities=16%  Similarity=0.293  Sum_probs=85.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHH
Q 004661          510 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEIS  589 (739)
Q Consensus       510 ~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~  589 (739)
                      ++..+..+++.++.|+..-.-+.+.+..||.++++|.+.+.+--       -..+++...+|-+-+|...++..+.....
T Consensus        75 qlddi~~qlr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~-------~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q  147 (499)
T COG4372          75 QLDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQER-------EAVRQELAAARQNLAKAQQELARLTKQAQ  147 (499)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677788888888888888888899999999999998886532       23467788888899999988888888888


Q ss_pred             HHHHHhhhHHHhhhhHHHHHHHHHHHHHHHH
Q 004661          590 SYKKKISSLEKERQDFQSTIEALQEEKKMMQ  620 (739)
Q Consensus       590 s~~rqvsslekeR~~lqs~i~ALQEEKKlLq  620 (739)
                      .++..+--|..+|..|.--.+.||-+.|-||
T Consensus       148 ~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ  178 (499)
T COG4372         148 DLQTRLKTLAEQRRQLEAQAQSLQASQKQLQ  178 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888888888888888888888888887

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=95.69  E-value=0.7  Score=54.57  Aligned_cols=155  Identities=22%  Similarity=0.261  Sum_probs=87.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH----HHHHHH----hHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 004661          465 LEQHIEDLTQEKFALQRSLEASRALSESLAAENSSL----TDSYNQ----QRSVVNQLKSEMEKLQEEIKVQLVELESFR  536 (739)
Q Consensus       465 LqQhIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaL----Td~yNq----Q~~~v~qLk~dmEqLq~Ei~aQ~~~les~~  536 (739)
                      |+.-+++|-.|.-.|.+.|+..+.-......+...+    ..+-.+    -+..+.-+++++..++.+.+.....+..+.
T Consensus         1 Lq~ql~~~q~E~e~L~~ele~~~~~l~~~~~~i~~fwspElkrer~~rkee~a~l~~~k~qlr~~q~e~q~~~~ei~~Lq   80 (775)
T PF10174_consen    1 LQAQLERLQRENERLRRELERKQSKLGSSMNSIKTFWSPELKRERALRKEEAAELSRLKEQLRVTQEENQKAQEEIQALQ   80 (775)
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHH
Confidence            455678888899999988888877666666554331    111111    122344455555555555555555555555


Q ss_pred             HHHHHHHhhch-------hHHHHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHH
Q 004661          537 NEYANVRLECN-------AADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTI  609 (739)
Q Consensus       537 ~ErdaArle~~-------aA~ERak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i  609 (739)
                      .|. .++-+.+       .+......+.. +=-.++.+.+|-.       |.+.+..|+..+++.+..++-.=..++-++
T Consensus        81 eEL-r~q~e~~rL~~~~e~~~~e~e~l~~-ld~~~~q~~rl~~-------E~er~~~El~~lr~~lE~~q~~~e~~q~~l  151 (775)
T PF10174_consen   81 EEL-RAQRELNRLQQELEKAQYEFESLQE-LDKAQEQFERLQA-------ERERLQRELERLRKTLEELQLRIETQQQTL  151 (775)
T ss_pred             HHH-HHhhHHHHHHHHhhhcccccchhhh-hhhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555 4433222       22333333433 2233444444443       444455555555555555555555677788


Q ss_pred             HHHHHHHHHHHHHHHhhhC
Q 004661          610 EALQEEKKMMQSKLRKASG  628 (739)
Q Consensus       610 ~ALQEEKKlLqskLRka~a  628 (739)
                      ++.+++.+.|+.+|...+.
T Consensus       152 ~~~~eei~kL~e~L~~~g~  170 (775)
T PF10174_consen  152 DKADEEIEKLQEMLQSKGL  170 (775)
T ss_pred             HHHHHHHHHHHHHHhhcCC
Confidence            8888888889998865544

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>PRK04863 mukB cell division protein MukB; Provisional

Probab=95.66  E-value=1.5  Score=54.93  Aligned_cols=44  Identities=9%  Similarity=0.205  Sum_probs=27.1

Q ss_pred             hhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHh
Q 004661          582 ENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRK  625 (739)
Q Consensus       582 e~l~~E~~s~~rqvsslekeR~~lqs~i~ALQEEKKlLqskLRk  625 (739)
                      ++|...+..|..++..++.++.+++.-++.++.+.+-+..++..
T Consensus       438 EeLe~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~~  481 (1486)
T PRK04863        438 DNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQL  481 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45556666666666666666666666666666666555555443

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=95.63  E-value=0.42  Score=51.35  Aligned_cols=136  Identities=20%  Similarity=0.263  Sum_probs=68.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHH
Q 004661          475 EKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAK  554 (739)
Q Consensus       475 EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak  554 (739)
                      ++-.|..-|..+++-+..|..|...|..++++-.+-+.-|+..+.+++-...  ......+..||.+.....-.+.++..
T Consensus        66 ~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~--~~~~~~~~~ere~lV~qLEk~~~q~~  143 (319)
T PF09789_consen   66 ENKNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDE--GIGARHFPHEREDLVEQLEKLREQIE  143 (319)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhc--cccccccchHHHHHHHHHHHHHHHHH
Confidence            4555666667777777777777777776666554444444444444333221  11122223455555555555555555


Q ss_pred             HHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHH-------HHHHHHHHHHHHHHHHHhh
Q 004661          555 ILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQS-------TIEALQEEKKMMQSKLRKA  626 (739)
Q Consensus       555 ~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~~lqs-------~i~ALQEEKKlLqskLRka  626 (739)
                      .|.-++..+-              -|.+++..|++-|+-++.-|-.|=..+..       -||+|=.|-|-|+.||.++
T Consensus       144 qLe~d~qs~l--------------DEkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~  208 (319)
T PF09789_consen  144 QLERDLQSLL--------------DEKEELVTERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKERLKQL  208 (319)
T ss_pred             HHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHH
Confidence            5544444433              33344444445555554444433333322       2556555555555555543

>PRK09039 hypothetical protein; Validated

Probab=95.62  E-value=2.6  Score=45.05  Aligned_cols=56  Identities=20%  Similarity=0.245  Sum_probs=27.8

Q ss_pred             HHHHHHHHhhchhHHHHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhH
Q 004661          536 RNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSL  598 (739)
Q Consensus       536 ~~ErdaArle~~aA~ERak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvssl  598 (739)
                      ..++++.+..++++.-....|-.||-.|+++       .-.++-+++.+..+....+.++..|
T Consensus       122 ~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Q-------la~le~~L~~ae~~~~~~~~~i~~L  177 (343)
T PRK09039        122 AQELDSEKQVSARALAQVELLNQQIAALRRQ-------LAALEAALDASEKRDRESQAKIADL  177 (343)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556666666655555444444444444444       3344444444444444444444433

>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein

Probab=95.56  E-value=3.1  Score=45.25  Aligned_cols=26  Identities=8%  Similarity=0.040  Sum_probs=14.4

Q ss_pred             HHHhHHHHHHHHhhhHHHhHHHhhhh
Q 004661          559 EVIGLEEKALRLRSNELKLERQLENS  584 (739)
Q Consensus       559 EVV~LEEk~LqLRS~eLKlErele~l  584 (739)
                      ++..|+.++-+++.+--+++.++.++
T Consensus       237 ~~~~~~~~i~~l~~~i~~~~~~~~~~  262 (457)
T TIGR01000       237 ILATIQQQIDQLQKSIASYQVQKAGL  262 (457)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            45555555555555555555555544

This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=95.56  E-value=0.14  Score=53.89  Aligned_cols=118  Identities=22%  Similarity=0.331  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 004661          462 FAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYAN  541 (739)
Q Consensus       462 faaLqQhIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~Erda  541 (739)
                      +..|+++++++..|+..+++-|.+-+               .=......+.++..+++.|++|...-+.+|+.+..|++.
T Consensus        11 ~~~l~~~~~~~~~E~~~Y~~fL~~l~---------------~~~~~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~   75 (314)
T PF04111_consen   11 LEQLDKQLEQAEKERDTYQEFLKKLE---------------EESDSEEDIEELEEELEKLEQEEEELLQELEELEKEREE   75 (314)
T ss_dssp             ----------------------------------------------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH---------------hcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35678889999999999998887766               001113345666667777777766666666666665544


Q ss_pred             HHhhchhHHHHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHH
Q 004661          542 VRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEE  615 (739)
Q Consensus       542 Arle~~aA~ERak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQEE  615 (739)
                      .              ..|...||++..+|...|.+.-++       ...+..++..+.++|+.+..-++.++++
T Consensus        76 l--------------~~el~~le~e~~~l~~eE~~~~~~-------~n~~~~~l~~~~~e~~sl~~q~~~~~~~  128 (314)
T PF04111_consen   76 L--------------DQELEELEEELEELDEEEEEYWRE-------YNELQLELIEFQEERDSLKNQYEYASNQ  128 (314)
T ss_dssp             H--------------HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             H--------------HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3              334444555555554444333333       3444455555555555555555444443

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>smart00787 Spc7 Spc7 kinetochore protein

Probab=95.50  E-value=2.6  Score=44.96  Aligned_cols=9  Identities=11%  Similarity=0.342  Sum_probs=6.2

Q ss_pred             ccccccCCc
Q 004661          450 QHGFYSTKH  458 (739)
Q Consensus       450 ~hdF~S~~~  458 (739)
                      |.+||+.+.
T Consensus       101 F~EY~~a~~  109 (312)
T smart00787      101 FKEYFSASP  109 (312)
T ss_pred             HHHHHcCCH
Confidence            778887653

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=95.49  E-value=0.14  Score=49.85  Aligned_cols=116  Identities=22%  Similarity=0.282  Sum_probs=70.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 004661          460 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEY  539 (739)
Q Consensus       460 ~~faaLqQhIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~Er  539 (739)
                      .-.+.|++-+.++-+.|-.++.-|-....-.+.|-.+......+-+.....+..|+..+..|..+|+.....++.+..|+
T Consensus        74 ~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~  153 (194)
T PF08614_consen   74 QKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDEL  153 (194)
T ss_dssp             ----------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555666666666777777777777777777777788888888888999999999999999999999999999999999


Q ss_pred             HHHHhhchhHHHHHHHHHHHHHhHHHHHHHHhhhHH
Q 004661          540 ANVRLECNAADERAKILASEVIGLEEKALRLRSNEL  575 (739)
Q Consensus       540 daArle~~aA~ERak~LAAEVV~LEEk~LqLRS~eL  575 (739)
                      .+.+++++.+.++.+.|=.|=-.|=+|.|+.+..+-
T Consensus       154 ~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~~k~~eA  189 (194)
T PF08614_consen  154 QALQLQLNMLEEKLRKLEEENRELVERWMQRKAQEA  189 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999988766543

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein

Probab=95.49  E-value=3.4  Score=44.93  Aligned_cols=22  Identities=18%  Similarity=0.345  Sum_probs=10.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHh
Q 004661          604 DFQSTIEALQEEKKMMQSKLRK  625 (739)
Q Consensus       604 ~lqs~i~ALQEEKKlLqskLRk  625 (739)
                      .+...++.++.+...++.+|.+
T Consensus       288 ~~~~~l~~~~~~l~~~~~~l~~  309 (457)
T TIGR01000       288 KVKQEITDLNQKLLELESKIKS  309 (457)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            4444555555555555554443

This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=95.49  E-value=0.71  Score=55.88  Aligned_cols=48  Identities=17%  Similarity=0.181  Sum_probs=30.4

Q ss_pred             hhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhC
Q 004661          581 LENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASG  628 (739)
Q Consensus       581 le~l~~E~~s~~rqvsslekeR~~lqs~i~ALQEEKKlLqskLRka~a  628 (739)
                      +.++-.+.+.|.++.+..+-+|+.|.-.+..++.|++....+++....
T Consensus       887 i~~~~~~~e~~~~e~~~~~l~~kkle~e~~~~~~e~~~~~k~v~~l~~  934 (1174)
T KOG0933|consen  887 ISGLLTSQEKCLSEKSDGELERKKLEHEVTKLESEKANARKEVEKLLK  934 (1174)
T ss_pred             HhhhhhHHHHHHHHhhcccchHHHHHhHHHHhhhhHHHHHHHHHHHHH
Confidence            333444445555556666667777777777777777776666666554

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=95.44  E-value=2.1  Score=46.09  Aligned_cols=63  Identities=21%  Similarity=0.385  Sum_probs=50.8

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 004661          459 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQ  528 (739)
Q Consensus       459 ~~~faaLqQhIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ  528 (739)
                      -.|+.|+-.++++       -.|.|+=+-+|-+.|-..|..|+.++......++...+.|.+|+-|+..-
T Consensus        61 y~Didavt~lLeE-------kerDLelaA~iGqsLl~~N~~L~~~~~~le~~L~~~~e~v~qLrHeL~~k  123 (306)
T PF04849_consen   61 YNDIDAVTRLLEE-------KERDLELAARIGQSLLEQNQDLSERNEALEEQLGAALEQVEQLRHELSMK  123 (306)
T ss_pred             hhhHHHHHHHHHH-------HhhhHHHHHHHhHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3466666666655       46889999999999999999999998888888888888888888886543

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=95.34  E-value=0.21  Score=52.65  Aligned_cols=118  Identities=19%  Similarity=0.283  Sum_probs=39.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhH------HHHHHHHhhchhHHHHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhh
Q 004661          509 SVVNQLKSEMEKLQEEIKVQLVELESFR------NEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLE  582 (739)
Q Consensus       509 ~~v~qLk~dmEqLq~Ei~aQ~~~les~~------~ErdaArle~~aA~ERak~LAAEVV~LEEk~LqLRS~eLKlErele  582 (739)
                      ..+.+|+.++++++.|.+.+..-|+.+.      .+++..+.+.....+--+.|..|+-.||...-+|..+--+++++++
T Consensus         9 ~l~~~l~~~~~~~~~E~~~Y~~fL~~l~~~~~~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~   88 (314)
T PF04111_consen    9 LLLEQLDKQLEQAEKERDTYQEFLKKLEEESDSEEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELE   88 (314)
T ss_dssp             ---------------------------------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3578899999999999999988888776      2333444444444444444444444444444444444444444444


Q ss_pred             hhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 004661          583 NSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA  626 (739)
Q Consensus       583 ~l~~E~~s~~rqvsslekeR~~lqs~i~ALQEEKKlLqskLRka  626 (739)
                      .+..+...+-+....+..+...++...+.+.......+.+|.+.
T Consensus        89 ~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L  132 (314)
T PF04111_consen   89 ELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRL  132 (314)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444444444444444444444444444444433

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=95.31  E-value=1.9  Score=42.61  Aligned_cols=26  Identities=23%  Similarity=0.409  Sum_probs=18.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004661          461 DFAALEQHIEDLTQEKFALQRSLEAS  486 (739)
Q Consensus       461 ~faaLqQhIeDLT~EKfaLqR~L~~q  486 (739)
                      .+..++..|.++-.++-.|++.++..
T Consensus        21 ~L~~~~~~l~~~~~~~~~l~~~i~~~   46 (302)
T PF10186_consen   21 RLLELRSELQQLKEENEELRRRIEEI   46 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            47777777777777777777665553

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=95.31  E-value=0.7  Score=44.08  Aligned_cols=38  Identities=18%  Similarity=0.311  Sum_probs=15.6

Q ss_pred             HHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHH
Q 004661          485 ASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQ  522 (739)
Q Consensus       485 ~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq  522 (739)
                      ..+..-..|..|-+.+-++.+.....+..++++...++
T Consensus        85 ~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~  122 (191)
T PF04156_consen   85 ELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELR  122 (191)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            33333333444444444444444444444444444333

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>PF13166 AAA_13: AAA domain

Probab=95.30  E-value=1.8  Score=48.55  Aligned_cols=114  Identities=22%  Similarity=0.335  Sum_probs=51.8

Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHH-------------HhhhhHHHHHHHHhhchhHHHHHHHHHHHHHhHHHHHHHH
Q 004661          504 YNQQRSVVNQLKSEMEKLQEEIKVQLV-------------ELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRL  570 (739)
Q Consensus       504 yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~-------------~les~~~ErdaArle~~aA~ERak~LAAEVV~LEEk~LqL  570 (739)
                      +.+-...+.+++..++.+.+.+..-..             .+..+....+.....+....+....+..|.-.|.+++...
T Consensus       324 ~~~~~~~~~~l~~~l~~l~~~L~~K~~~~~~~~~~~~~~~~~~~l~~~i~~~n~~i~~~n~~~~~~~~~~~~~~~~~~~~  403 (712)
T PF13166_consen  324 KEELKSAIEALKEELEELKKALEKKIKNPSSPIELEEINEDIDELNSIIDELNELIEEHNEKIDNLKKEQNELKDKLWLH  403 (712)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444445555555555554444331             1223344444455555555666666666666666665544


Q ss_pred             hhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHH
Q 004661          571 RSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMM  619 (739)
Q Consensus       571 RS~eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQEEKKlL  619 (739)
                      .-..  ....++.+..++..+++++..++++...+...+..++.+.+.|
T Consensus       404 ~~~~--~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~l  450 (712)
T PF13166_consen  404 LIAK--LKEDIEEYQKEIKELEKEINSLEKKLKKAKEEIKKIEKEIKEL  450 (712)
T ss_pred             HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2222  2222223333333444444444444444444444444433333

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=95.20  E-value=0.54  Score=50.55  Aligned_cols=87  Identities=17%  Similarity=0.275  Sum_probs=64.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhH-------------------HHHHHHHHHHHHH
Q 004661          461 DFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQR-------------------SVVNQLKSEMEKL  521 (739)
Q Consensus       461 ~faaLqQhIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~-------------------~~v~qLk~dmEqL  521 (739)
                      ++..|.+.+.|..++.-.|+..+..-+.--..|-.++-.|-.+.+.+.                   ..+..++.+.++|
T Consensus        66 ~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qL  145 (319)
T PF09789_consen   66 ENKNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQL  145 (319)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHH
Confidence            566666667776666666666666666555556666666665555543                   3457788999999


Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHhhch
Q 004661          522 QEEIKVQLVELESFRNEYANVRLECN  547 (739)
Q Consensus       522 q~Ei~aQ~~~les~~~ErdaArle~~  547 (739)
                      +.++++.+-+.+-+..|||+.+--|.
T Consensus       146 e~d~qs~lDEkeEl~~ERD~yk~K~~  171 (319)
T PF09789_consen  146 ERDLQSLLDEKEELVTERDAYKCKAH  171 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999986553

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=95.17  E-value=2.8  Score=46.98  Aligned_cols=137  Identities=23%  Similarity=0.272  Sum_probs=87.4

Q ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHHHHHHH
Q 004661          480 QRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASE  559 (739)
Q Consensus       480 qR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak~LAAE  559 (739)
                      ...|+.++..-+....|-..|.....-....+...|.++.++++....--..+.++..|....+.+..++.+.-...-.+
T Consensus       287 ~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~  366 (522)
T PF05701_consen  287 KKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKAKEA  366 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchhhh
Confidence            34566666666666677777777777777777777777777777777777777778888888777775554444333345


Q ss_pred             HHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHH
Q 004661          560 VIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEK  616 (739)
Q Consensus       560 VV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQEEK  616 (739)
                      +..|-..+.++.++-=.++++++..+.|+..++..+..+...=..++.-+.+.+.|.
T Consensus       367 ~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~  423 (522)
T PF05701_consen  367 MSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEA  423 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555666666666666666666666666666666666644444444444444444443

Several sequences in this family are described as being myosin heavy chain-like.

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=95.17  E-value=2.3  Score=51.74  Aligned_cols=190  Identities=21%  Similarity=0.273  Sum_probs=114.6

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 004661          459 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNE  538 (739)
Q Consensus       459 ~~~faaLqQhIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~E  538 (739)
                      .++...|..-|+++-++=-..+|++-..++-..+|.   ..+.+..+.++..+++|+.++..+.+.++++...++.-..|
T Consensus       740 ~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE---~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e  816 (1174)
T KOG0933|consen  740 LDDLKELLEEVEESEQQIKEKERALKKCEDKISTLE---KKMKDAKANRERRLKDLEKEIKTAKQRAEESSKELEKRENE  816 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444445555555554444443   35778888899999999999888888888888888888888


Q ss_pred             HHHHHhhchhHHHHHHHHHHHHHhHHHHHHHHhhhH-------HHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHH
Q 004661          539 YANVRLECNAADERAKILASEVIGLEEKALRLRSNE-------LKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEA  611 (739)
Q Consensus       539 rdaArle~~aA~ERak~LAAEVV~LEEk~LqLRS~e-------LKlErele~l~~E~~s~~rqvsslekeR~~lqs~i~A  611 (739)
                      |.+.+++|.+-.---+.+=....+||.+|..|.++.       -+.+.++..+..++.-+.+++....++-..+....++
T Consensus       817 ~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~e~  896 (1174)
T KOG0933|consen  817 YERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQEK  896 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHHHH
Confidence            888887776543333333344455555554444432       2333444444455555555555555555566666677


Q ss_pred             HHHHHHHHHHHHHhhhCCCCccccCCCcccccCcccccccccccC
Q 004661          612 LQEEKKMMQSKLRKASGSGKSIDFGKTAASTVNASTSTEDLAITD  656 (739)
Q Consensus       612 LQEEKKlLqskLRka~a~~k~~~~~~~s~~~~DaSTsTedL~~~~  656 (739)
                      |+.|+......+.+.-     -.+.+-+.+++++.+-.++|.-.-
T Consensus       897 ~~~e~~~~~l~~kkle-----~e~~~~~~e~~~~~k~v~~l~~k~  936 (1174)
T KOG0933|consen  897 CLSEKSDGELERKKLE-----HEVTKLESEKANARKEVEKLLKKH  936 (1174)
T ss_pred             HHHHhhcccchHHHHH-----hHHHHhhhhHHHHHHHHHHHHHhc
Confidence            7777655555544432     233445677788888888885443

>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function

Probab=95.15  E-value=0.92  Score=45.51  Aligned_cols=93  Identities=26%  Similarity=0.306  Sum_probs=68.2

Q ss_pred             HHhhhHHHHHHHHh--HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHHHHHHHHHhHHHHHHHHh
Q 004661          494 AAENSSLTDSYNQQ--RSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLR  571 (739)
Q Consensus       494 A~ENsaLTd~yNqQ--~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak~LAAEVV~LEEk~LqLR  571 (739)
                      --+|=+|+.+|-..  ..-..+|...+++|+.+++.+.-.++.+-.+|-..|+++.          .++-.||.+-..+-
T Consensus       119 R~~NLeLl~~~g~naW~~~n~~Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q~~~~----------~~L~~Le~~W~~~v  188 (221)
T PF05700_consen  119 RLENLELLSKYGENAWLIHNEQLEAMLKRLEKELAKLKKEIEEVNRERKRRQEEAG----------EELRYLEQRWKELV  188 (221)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH----------HHHHHHHHHHHHHH
Confidence            34555677776433  3455788999999999999999999999999999888753          45556777777776


Q ss_pred             hhHHHhHHHhhhhhHHHHHHHHHhh
Q 004661          572 SNELKLERQLENSQSEISSYKKKIS  596 (739)
Q Consensus       572 S~eLKlErele~l~~E~~s~~rqvs  596 (739)
                      +.-+.++....+|..||..++++..
T Consensus       189 ~kn~eie~a~~~Le~ei~~l~~~~~  213 (221)
T PF05700_consen  189 SKNLEIEVACEELEQEIEQLKRKAA  213 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6667667776666666666666655

The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].

>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional

Probab=95.12  E-value=0.87  Score=52.41  Aligned_cols=70  Identities=13%  Similarity=0.250  Sum_probs=39.3

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHHHHHHHHHhHHHHHHHHhhhH
Q 004661          500 LTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNE  574 (739)
Q Consensus       500 LTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak~LAAEVV~LEEk~LqLRS~e  574 (739)
                      +.++.-+....+.-|.++++++++++.....+++.|+.+..-     .+..+.++.+-.++..||.++..|+..+
T Consensus       258 l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~-----~d~~~ea~~~l~~~~~l~~ql~~l~~~~  327 (726)
T PRK09841        258 IARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQRDS-----VDLNLEAKAVLEQIVNVDNQLNELTFRE  327 (726)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-----CCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444445556666777777777777777777777665421     1222334444445555666665555433

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants

Probab=95.07  E-value=1.3  Score=52.26  Aligned_cols=120  Identities=22%  Similarity=0.256  Sum_probs=80.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHh
Q 004661          465 LEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRL  544 (739)
Q Consensus       465 LqQhIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArl  544 (739)
                      +.+-+..++-|-.+|-++|+.--.+...|-.+....-..++.....+..+.++.--|+-|+.+..-+|+--..||+--+.
T Consensus        97 ~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~keleir~~E~~~~~~  176 (769)
T PF05911_consen   97 LSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELEIRNEEREYSRR  176 (769)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            33344444555555555555555555555555555555667777777777777777777777777777777888888888


Q ss_pred             hchhHHHHHHHHHHHHHhHHHHHHHHhhhH----------HHhHHHhhhh
Q 004661          545 ECNAADERAKILASEVIGLEEKALRLRSNE----------LKLERQLENS  584 (739)
Q Consensus       545 e~~aA~ERak~LAAEVV~LEEk~LqLRS~e----------LKlErele~l  584 (739)
                      .+.+|.-+=.-=.--|--||..|.|||.-.          -|++.|++.+
T Consensus       177 ~ae~a~kqhle~vkkiakLEaEC~rLr~l~rk~lpgpaa~a~mk~ev~~~  226 (769)
T PF05911_consen  177 AAEAASKQHLESVKKIAKLEAECQRLRALVRKKLPGPAALAQMKNEVESL  226 (769)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHhHHHHHHh
Confidence            887776544433444567999999999865          4567777776

The function of this family is unknown.

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=95.06  E-value=2.6  Score=50.53  Aligned_cols=167  Identities=20%  Similarity=0.210  Sum_probs=112.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH----------HHHHhHHHHHHHHHHHHHHHHHHHHHHH----
Q 004661          465 LEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTD----------SYNQQRSVVNQLKSEMEKLQEEIKVQLV----  530 (739)
Q Consensus       465 LqQhIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd----------~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~----  530 (739)
                      |+-...+||++|.+++-+|--|+.-+|.+-+--..|-.          +.-+-.--+.+++.-+-.|+.+++.|.-    
T Consensus       321 lh~enmkltrqkadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQidelKn  400 (1265)
T KOG0976|consen  321 LHLENMKLTRQKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQIDELKN  400 (1265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44456688999999999999999888877654433321          2222222233333333334444444433    


Q ss_pred             ---HhhhhHHHHHHHHhhchhHHHHHHHHHHHHHhHHHHHHHHhh----hHHHhHHHhhhhhHHHHHHHHHhhhHHHhhh
Q 004661          531 ---ELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRS----NELKLERQLENSQSEISSYKKKISSLEKERQ  603 (739)
Q Consensus       531 ---~les~~~ErdaArle~~aA~ERak~LAAEVV~LEEk~LqLRS----~eLKlErele~l~~E~~s~~rqvsslekeR~  603 (739)
                         -++..+..-.+|.-+...|-||+-.|-.+.+-+|-+|-.+++    .+.+.++.++.-..=|.+++...-+++|.|.
T Consensus       401 ~if~~e~~~~dhe~~kneL~~a~ekld~mgthl~mad~Q~s~fk~Lke~aegsrrraIeQcnemv~rir~l~~sle~qrK  480 (1265)
T KOG0976|consen  401 HIFRLEQGKKDHEAAKNELQEALEKLDLMGTHLSMADYQLSNFKVLKEHAEGSRRRAIEQCNEMVDRIRALMDSLEKQRK  480 (1265)
T ss_pred             hhhhhhhccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHhhhhhHhhHHHHHHHHHHHHHHHhhChhhhcc
Confidence               344556777899999999999999999999999999988764    5778899998888888888888888887774


Q ss_pred             hHH-----------------HHHHHHHHHHHHHHHHHHhhhCCCC
Q 004661          604 DFQ-----------------STIEALQEEKKMMQSKLRKASGSGK  631 (739)
Q Consensus       604 ~lq-----------------s~i~ALQEEKKlLqskLRka~a~~k  631 (739)
                      -=|                 -.-+++||-.--+.+.|-+++-.++
T Consensus       481 Veqe~emlKaen~rqakkiefmkEeiQethldyR~els~lA~r~a  525 (1265)
T KOG0976|consen  481 VEQEYEMLKAENERQAKKIEFMKEEIQETHLDYRSELSELAHRKA  525 (1265)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence            211                 1223444444455666666666543

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=94.95  E-value=3.4  Score=41.65  Aligned_cols=32  Identities=31%  Similarity=0.376  Sum_probs=19.0

Q ss_pred             HHhhchhHHHHHHHHHHHHHhHHHHHHHHhhh
Q 004661          542 VRLECNAADERAKILASEVIGLEEKALRLRSN  573 (739)
Q Consensus       542 Arle~~aA~ERak~LAAEVV~LEEk~LqLRS~  573 (739)
                      ...++..|.+|+..+-..|..||+++..+..+
T Consensus       125 ~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~  156 (237)
T PF00261_consen  125 LEQELERAEERAEAAESKIKELEEELKSVGNN  156 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhchhHHHHHHHHHHHHHH
Confidence            34445556666666666666666666555433

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>KOG1103 consensus Predicted coiled-coil protein [Function unknown]

Probab=94.93  E-value=4.3  Score=45.16  Aligned_cols=69  Identities=19%  Similarity=0.278  Sum_probs=50.5

Q ss_pred             HHHHHHHH-HHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhh
Q 004661          477 FALQRSLE-ASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLE  545 (739)
Q Consensus       477 faLqR~L~-~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle  545 (739)
                      ..|+-+++ +.+++.-.|.++-++-.+..-+-.+++.-|..+.|||+++|.-...+...+..+.|...+.
T Consensus       106 ~s~LaAaE~khrKli~dLE~dRe~haqdaaeGDDlt~~LEKEReqL~QQiEFe~~e~kK~E~~k~Kl~~q  175 (561)
T KOG1103|consen  106 ASLLAAAEKKHRKLIKDLEADREAHAQDAAEGDDLTAHLEKEREQLQQQIEFEIEEKKKAEIAKDKLEMQ  175 (561)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444443 5788999999999888877777677888999999999999988777766555554443333

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=94.91  E-value=1.7  Score=46.84  Aligned_cols=71  Identities=18%  Similarity=0.350  Sum_probs=37.9

Q ss_pred             HHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHH
Q 004661          551 ERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQS  621 (739)
Q Consensus       551 ERak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQEEKKlLqs  621 (739)
                      |-.-.|-++||.|+.||.++=.+.=+|...+...+.--..+...+.-+..-=.+....++..|||-|-|.+
T Consensus       234 EEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQEElk~lR~  304 (306)
T PF04849_consen  234 EEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQEELKTLRK  304 (306)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            33334445555555555555444444444444444333444444444444444677788888888776654

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=94.89  E-value=4.5  Score=45.29  Aligned_cols=35  Identities=37%  Similarity=0.403  Sum_probs=18.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHh
Q 004661          462 FAALEQHIEDLTQEKFALQRSL-EASRALSESLAAE  496 (739)
Q Consensus       462 faaLqQhIeDLT~EKfaLqR~L-~~q~~l~EsLA~E  496 (739)
                      ...+++-|+|+...+-.|+-.. ++.+.|++.|++-
T Consensus        89 l~~~~~~I~~~~~~l~~l~~q~r~qr~~La~~L~A~  124 (420)
T COG4942          89 LKKLRKQIADLNARLNALEVQEREQRRRLAEQLAAL  124 (420)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444455555555444444444 5555666666554

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=94.85  E-value=3.5  Score=50.88  Aligned_cols=155  Identities=21%  Similarity=0.291  Sum_probs=92.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHH-----------HHHHHHHHHHHHHHHHHH
Q 004661          462 FAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVN-----------QLKSEMEKLQEEIKVQLV  530 (739)
Q Consensus       462 faaLqQhIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~-----------qLk~dmEqLq~Ei~aQ~~  530 (739)
                      ..-|+.-|+..-.+++.+.-+++.++..-+.+-.|++.|...-+.-...+.           .++.+++.++.++.--+.
T Consensus       414 ~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~~~  493 (1293)
T KOG0996|consen  414 IKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQETEGIREEIEKLEKELMPLLK  493 (1293)
T ss_pred             HHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH
Confidence            445566777777888888888888887777777777777666555443332           233444445555544444


Q ss_pred             HhhhhHHHHHHHHhhchhHHHHHHHHHHHHHhHHHHHHHHhh-------hHHHhHHHhhhhhHHHHHHHHHhhhHHHhhh
Q 004661          531 ELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRS-------NELKLERQLENSQSEISSYKKKISSLEKERQ  603 (739)
Q Consensus       531 ~les~~~ErdaArle~~aA~ERak~LAAEVV~LEEk~LqLRS-------~eLKlErele~l~~E~~s~~rqvsslekeR~  603 (739)
                      .+-..++|.|-|+.+...--.|.-.+---|..|..++++.+-       ...+++.++..++.|+....+.+..+-++-+
T Consensus       494 ~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~  573 (1293)
T KOG0996|consen  494 QVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEER  573 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHH
Confidence            555556666666666655555555555556666666655322       2233445555555566666666666666666


Q ss_pred             hHHHHHHHHHHHH
Q 004661          604 DFQSTIEALQEEK  616 (739)
Q Consensus       604 ~lqs~i~ALQEEK  616 (739)
                      .|...++++..+-
T Consensus       574 ~~~~~~~~~rqrv  586 (1293)
T KOG0996|consen  574 NLKSQLNKLRQRV  586 (1293)
T ss_pred             HHHHHHHHHHHHH
Confidence            6666665655433

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=94.84  E-value=3.8  Score=50.82  Aligned_cols=101  Identities=14%  Similarity=0.181  Sum_probs=65.7

Q ss_pred             HhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHHHHHHHHHhHHHHHHHHhhhH
Q 004661          495 AENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNE  574 (739)
Q Consensus       495 ~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak~LAAEVV~LEEk~LqLRS~e  574 (739)
                      .|-.+.-...+.-+.++.+|...||.|+.++..+-.+-+.+..+.+.|++++..|..-.+.|- +-..+=+++++-|++.
T Consensus      1605 ~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~~A~~a~~~a~sa~~~A~~a~q~~~~lq-~~~~~~~~l~~~r~~g 1683 (1758)
T KOG0994|consen 1605 EETAAAEKLATSATQQLGELETRMEELKHKAAQNSAEAKQAEKTAGSAKEQALSAEQGLEILQ-KYYELVDRLLEKRMEG 1683 (1758)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhc
Confidence            344444556677777889999999999999888888888888888888888888877666432 2333444444444443


Q ss_pred             -HHhHHHhhhhhHHHHHHHHHhh
Q 004661          575 -LKLERQLENSQSEISSYKKKIS  596 (739)
Q Consensus       575 -LKlErele~l~~E~~s~~rqvs  596 (739)
                       +-.++.+|.|+.|++.+--+..
T Consensus      1684 ~~~ar~rAe~L~~eA~~Ll~~a~ 1706 (1758)
T KOG0994|consen 1684 SQAARERAEQLRTEAEKLLGQAN 1706 (1758)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHH
Confidence             3334445555555555544443

>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins

Probab=94.74  E-value=2.4  Score=49.96  Aligned_cols=106  Identities=18%  Similarity=0.294  Sum_probs=61.5

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHH
Q 004661          515 KSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKK  594 (739)
Q Consensus       515 k~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rq  594 (739)
                      +.++|..++.-+.|+.-   +..++..   +.......+..|=-.+-.||.+.....+.--...++++.|+.+.+.....
T Consensus       139 q~ELee~q~~Hqeql~~---Lt~aHq~---~l~sL~~k~~~Le~~L~~le~~r~~e~~~La~~q~e~d~L~~qLsk~~~~  212 (739)
T PF07111_consen  139 QRELEEAQRLHQEQLSS---LTQAHQE---ALASLTSKAEELEKSLESLETRRAGEAKELAEAQREADLLREQLSKTQEE  212 (739)
T ss_pred             HHHHHHHHHHHHHHHHH---HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            44555555554444433   3333322   22333444555555555566655555544444555556565555444333


Q ss_pred             hhh------------------------HHHhhhhHHHHHHHHHHHH-------HHHHHHHHhh
Q 004661          595 ISS------------------------LEKERQDFQSTIEALQEEK-------KMMQSKLRKA  626 (739)
Q Consensus       595 vss------------------------lekeR~~lqs~i~ALQEEK-------KlLqskLRka  626 (739)
                      +.+                        -+-||++|..+|..|||||       -+||+|+.-.
T Consensus       213 le~q~tlv~~LR~YvGeq~p~~~~~~~we~Er~~L~~tVq~L~edR~~L~~T~ELLqVRvqSL  275 (739)
T PF07111_consen  213 LEAQVTLVEQLRKYVGEQVPPEVHSQAWEPEREELLETVQHLQEDRDALQATAELLQVRVQSL  275 (739)
T ss_pred             HHHHHHHHHHHHHHHhhhCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            332                        2689999999999999999       6788888764

The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=94.74  E-value=3.7  Score=47.32  Aligned_cols=103  Identities=29%  Similarity=0.297  Sum_probs=64.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhH-HHH--HHHHhhc
Q 004661          470 EDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFR-NEY--ANVRLEC  546 (739)
Q Consensus       470 eDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~-~Er--daArle~  546 (739)
                      ++-.+|--+|+..|+.-..-.+.+.++-..++..+-+....+.+.+...++|+++++...-.++=+. .|.  ...+.-|
T Consensus       324 ~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~~~v  403 (594)
T PF05667_consen  324 EEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKLQALV  403 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            3344455556666666677777777777777777777777788888888888888776655444332 122  2333446


Q ss_pred             hhHHHHHHHHHHHHH----hHHHHHHHHhh
Q 004661          547 NAADERAKILASEVI----GLEEKALRLRS  572 (739)
Q Consensus       547 ~aA~ERak~LAAEVV----~LEEk~LqLRS  572 (739)
                      .+..+|-..|+.++-    -|.++..+||.
T Consensus       404 ~~s~~rl~~L~~qWe~~R~pL~~e~r~lk~  433 (594)
T PF05667_consen  404 EASEQRLVELAQQWEKHRAPLIEEYRRLKE  433 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            667777777777663    34455555543

>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=94.73  E-value=3.9  Score=49.88  Aligned_cols=121  Identities=26%  Similarity=0.361  Sum_probs=73.0

Q ss_pred             cccccccCCchhhHHHH-------------------HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHh
Q 004661          449 NQHGFYSTKHNEDFAAL-------------------EQHIE--DLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQ  507 (739)
Q Consensus       449 ~~hdF~S~~~~~~faaL-------------------qQhIe--DLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ  507 (739)
                      +.--|...++-.+||.|                   ++|++  ||-++--+|++.+..-.+--+.|-+++++|....+.-
T Consensus       142 NLCqFLpQDkV~EFa~L~pi~LL~eTekAig~~~ll~~h~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~  221 (1072)
T KOG0979|consen  142 NLCQFLPQDKVKEFARLSPIELLVETEKAIGAEELLQYHIELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERV  221 (1072)
T ss_pred             chhhhccHHHHHHHHcCChHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            35568999999999865                   34543  5555666777777777777777777776666555543


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHHHHHHHHHhHHHHHHHHhh
Q 004661          508 RSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRS  572 (739)
Q Consensus       508 ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak~LAAEVV~LEEk~LqLRS  572 (739)
                      ... ...++.+|.|+.-  --.+..+....||.+.++...-|.+--|.|--|+..+|.+.-.|++
T Consensus       222 rer-~~~~~~Ie~l~~k--~~~v~y~~~~~ey~~~k~~~~r~k~~~r~l~k~~~pi~~~~eeLe~  283 (1072)
T KOG0979|consen  222 RER-ERKKSKIELLEKK--KKWVEYKKHDREYNAYKQAKDRAKKELRKLEKEIKPIEDKKEELES  283 (1072)
T ss_pred             HHH-HHHHHHHHHHHHh--ccccchHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHh
Confidence            322 2233344433221  1123344456666666666666666666666666666666666665

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=94.70  E-value=2.1  Score=51.82  Aligned_cols=100  Identities=27%  Similarity=0.417  Sum_probs=66.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHHHHHHHHHhHHHHHHHHhh--------------hHHH
Q 004661          511 VNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRS--------------NELK  576 (739)
Q Consensus       511 v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak~LAAEVV~LEEk~LqLRS--------------~eLK  576 (739)
                      +.-|+-++|.|++-+..-...||=+++|..+-=-..+.+.      +-|.-.||.+--+||-              +..|
T Consensus       327 aesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~s------s~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK  400 (1243)
T KOG0971|consen  327 AESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAAS------SYQFKQLEQQNARLKDALVRLRDLSASEKQDHQK  400 (1243)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccc------hHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence            4445556666666666666667777777665422222221      3355566666555554              4556


Q ss_pred             hHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHH
Q 004661          577 LERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEK  616 (739)
Q Consensus       577 lErele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQEEK  616 (739)
                      +.||+|..+.|+.-++++-+-|.++=..+.++|.-|||.-
T Consensus       401 ~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQV  440 (1243)
T KOG0971|consen  401 LQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQV  440 (1243)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7788999999999888888888888888888888888653

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=94.67  E-value=6.4  Score=42.70  Aligned_cols=34  Identities=18%  Similarity=0.273  Sum_probs=17.4

Q ss_pred             hhHHHHHHHHhhchhHHHHHHHHHHHHHhHHHHH
Q 004661          534 SFRNEYANVRLECNAADERAKILASEVIGLEEKA  567 (739)
Q Consensus       534 s~~~ErdaArle~~aA~ERak~LAAEVV~LEEk~  567 (739)
                      .+..|+...+..+++-.-..+.+-.++-.|+.++
T Consensus       258 ~l~~~l~~l~~~y~~~hP~v~~l~~qi~~l~~~l  291 (498)
T TIGR03007       258 ALEKQLDALRLRYTDKHPDVIATKREIAQLEEQK  291 (498)
T ss_pred             HHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHH
Confidence            3344555555555555555555555555555543

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=94.64  E-value=3.8  Score=38.15  Aligned_cols=36  Identities=28%  Similarity=0.542  Sum_probs=27.4

Q ss_pred             HHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 004661          591 YKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA  626 (739)
Q Consensus       591 ~~rqvsslekeR~~lqs~i~ALQEEKKlLqskLRka  626 (739)
                      ...+-..|+++..++..-++.|.+.-++|+.+|...
T Consensus        96 w~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~l  131 (132)
T PF07926_consen   96 WEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLESL  131 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            344445566777788888899999999999998643

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=94.63  E-value=0.0092  Score=67.82  Aligned_cols=162  Identities=29%  Similarity=0.377  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH--
Q 004661          464 ALEQHIEDLTQEKFALQRSLEASRALSES----LAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRN--  537 (739)
Q Consensus       464 aLqQhIeDLT~EKfaLqR~L~~q~~l~Es----LA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~--  537 (739)
                      -|++.|.+|.+||-.|+-.+...+.-..+    ..+.+..+..+++.-...+.+|++++++++..+.-+...++.+..  
T Consensus       197 el~~~i~~L~~e~~~L~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ql~~L~~el~~~e~~~~d~~~~~e~le~ei  276 (713)
T PF05622_consen  197 ELEKQISDLQEEKESLQSENEELQERLSQLEGSSEEPSQHLSVELADLRAQLRRLREELERLEEQRDDLKIELEELEKEI  276 (713)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHhHHHhhhhhhhhhcccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46677888888888887666544433222    224455566677777777777777776665444333333222222  


Q ss_pred             ---------------HHHHHHhhchhHH---HHHHHHHHH-----------------HHhHHHHHHHHhhhHHHhHHHhh
Q 004661          538 ---------------EYANVRLECNAAD---ERAKILASE-----------------VIGLEEKALRLRSNELKLERQLE  582 (739)
Q Consensus       538 ---------------ErdaArle~~aA~---ERak~LAAE-----------------VV~LEEk~LqLRS~eLKlErele  582 (739)
                                     |-.+.|=+.....   +|+..|.++                 |=.|||+...|.-..+.||.++.
T Consensus       277 ~~L~q~~~eL~~~A~~a~~LrDElD~lR~~a~r~~klE~~ve~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel~  356 (713)
T PF05622_consen  277 DELRQENEELQAEAREARALRDELDELREKADRADKLENEVEKYKKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEELK  356 (713)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                           2222222222222   233334443                 33444444444444455565555


Q ss_pred             h---hhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHh
Q 004661          583 N---SQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRK  625 (739)
Q Consensus       583 ~---l~~E~~s~~rqvsslekeR~~lqs~i~ALQEEKKlLqskLRk  625 (739)
                      .   ++..+..|++++..|+.++.+...-++.|+.|.+.|+.++..
T Consensus       357 ~~~~~~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~  402 (713)
T PF05622_consen  357 KARALKSQLEEYKKQIQELEQKLSEESRRADKLEFENKQLEEKLEA  402 (713)
T ss_dssp             ----------------------------------------------
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4   455677777888777777777766666666666666666543

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=94.54  E-value=3.4  Score=40.92  Aligned_cols=8  Identities=38%  Similarity=0.335  Sum_probs=3.4

Q ss_pred             hhHHHHHH
Q 004661          707 HNINALIS  714 (739)
Q Consensus       707 ~nIn~lis  714 (739)
                      .||--|+-
T Consensus       266 ~nI~~L~~  273 (302)
T PF10186_consen  266 KNIAQLCF  273 (302)
T ss_pred             HHHHHHHH
Confidence            34444443

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=94.53  E-value=4.9  Score=40.24  Aligned_cols=141  Identities=21%  Similarity=0.339  Sum_probs=66.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 004661          460 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEY  539 (739)
Q Consensus       460 ~~faaLqQhIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~Er  539 (739)
                      .-|.-+..---|.|..=+.|.+.|-...+-+..-...|..++...-+.   -..|.+-++++++|+..-.-.|..    |
T Consensus         9 ~af~~iK~YYndIT~~NL~lIksLKeei~emkk~e~~~~k~m~ei~~e---N~~L~epL~~a~~e~~eL~k~L~~----y   81 (201)
T PF13851_consen    9 KAFQEIKNYYNDITLNNLELIKSLKEEIAEMKKKEERNEKLMAEISQE---NKRLSEPLKKAEEEVEELRKQLKN----Y   81 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhHHHHHHHHHHHHHHHHHHH----H
Confidence            445555566666676666666666666555555555555444332221   222222333333322222222221    1


Q ss_pred             HHHHhhchhHHHHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHH----
Q 004661          540 ANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEE----  615 (739)
Q Consensus       540 daArle~~aA~ERak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQEE----  615 (739)
                      ..-++....                     +|..--.+++++..++-|-+-+.-+...+++||.+|...++.+-.|    
T Consensus        82 ~kdK~~L~~---------------------~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk  140 (201)
T PF13851_consen   82 EKDKQSLQN---------------------LKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQK  140 (201)
T ss_pred             HHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            111111111                     2222223355555566666666666666777777666555443322    


Q ss_pred             ----HHHHHHHHHhhhC
Q 004661          616 ----KKMMQSKLRKASG  628 (739)
Q Consensus       616 ----KKlLqskLRka~a  628 (739)
                          -.+|+.||..+..
T Consensus       141 ~~~kn~lLEkKl~~l~~  157 (201)
T PF13851_consen  141 TGLKNLLLEKKLQALSE  157 (201)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence                2556666665543

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=94.45  E-value=7.9  Score=41.98  Aligned_cols=50  Identities=18%  Similarity=0.420  Sum_probs=33.1

Q ss_pred             HhHHHhhhhhHHHHHHHHHhhhHHHhhhhH----HHHHHHHHHHHHHHHHHHHh
Q 004661          576 KLERQLENSQSEISSYKKKISSLEKERQDF----QSTIEALQEEKKMMQSKLRK  625 (739)
Q Consensus       576 KlErele~l~~E~~s~~rqvsslekeR~~l----qs~i~ALQEEKKlLqskLRk  625 (739)
                      ++...+..|+.|+.++++++...+++...-    ......+++|-++||-+|+.
T Consensus       226 ~~~shI~~Lr~EV~RLR~qL~~sq~e~~~k~~~~~~eek~ireEN~rLqr~L~~  279 (310)
T PF09755_consen  226 RLSSHIRSLRQEVSRLRQQLAASQQEHSEKMAQYLQEEKEIREENRRLQRKLQR  279 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344445577888888888888776665432    22235666777888888864

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=94.44  E-value=5.4  Score=48.78  Aligned_cols=45  Identities=16%  Similarity=0.312  Sum_probs=22.7

Q ss_pred             HHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 004661          579 RQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKL  623 (739)
Q Consensus       579 rele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQEEKKlLqskL  623 (739)
                      .++..+...+..++.+...+.++|......+..++.+...++.++
T Consensus       483 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~  527 (1201)
T PF12128_consen  483 EQQNQAQQAVEELQAEEQELRKERDQAEEELRQARRELEELRAQI  527 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444555555555555555555555555554444444443

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=94.34  E-value=3.7  Score=49.77  Aligned_cols=118  Identities=20%  Similarity=0.332  Sum_probs=75.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHHHHHHHHHhHHHHHHHHhhh-------------
Q 004661          507 QRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSN-------------  573 (739)
Q Consensus       507 Q~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak~LAAEVV~LEEk~LqLRS~-------------  573 (739)
                      -...+++|++.-|+|.+++..-.+.+..|++-.|||-    -|.|-.--|+.--.+|||||+.|+-.             
T Consensus       408 k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAl----GAE~MV~qLtdknlnlEekVklLeetv~dlEalee~~EQ  483 (1243)
T KOG0971|consen  408 KNSELEELRRQKERLSRELDQAESTIADLKEQVDAAL----GAEEMVEQLTDKNLNLEEKVKLLEETVGDLEALEEMNEQ  483 (1243)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----cHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456667777777777777777777777777777763    24444555666666777777777532             


Q ss_pred             --------HHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhC
Q 004661          574 --------ELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASG  628 (739)
Q Consensus       574 --------eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQEEKKlLqskLRka~a  628 (739)
                              |+-|++|++-++--+.-+.+++.++.+---+..-||-..+|=-.+||..||....
T Consensus       484 L~Esn~ele~DLreEld~~~g~~kel~~r~~aaqet~yDrdqTI~KfRelva~Lqdqlqe~~d  546 (1243)
T KOG0971|consen  484 LQESNRELELDLREELDMAKGARKELQKRVEAAQETVYDRDQTIKKFRELVAHLQDQLQELTD  546 (1243)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                    4445555555555555555555555555555556666666667888888887665

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=94.34  E-value=5.8  Score=47.24  Aligned_cols=174  Identities=20%  Similarity=0.251  Sum_probs=115.3

Q ss_pred             cccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH-------HHHhHHHHHHHHHHHHHHHHHH
Q 004661          453 FYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDS-------YNQQRSVVNQLKSEMEKLQEEI  525 (739)
Q Consensus       453 F~S~~~~~~faaLqQhIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~-------yNqQ~~~v~qLk~dmEqLq~Ei  525 (739)
                      |....++..-.+||..|+.=-..=-+|.|.|.....=.+.|-......+..       .=.-......+|.+|+++..|+
T Consensus       217 ~~~~~~~a~t~alq~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~~k~le~~~s~~~~mK~k~d~~~~eL  296 (775)
T PF10174_consen  217 LQMERDDAETEALQTVIEEKDTKIASLERMLRDLEDEIYRLRSRGELSEADRDRLDKQLEVYKSHSLAMKSKMDRLKLEL  296 (775)
T ss_pred             hhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            344555556668899988887777788888877555555453322222221       1122333445566677777776


Q ss_pred             HHHHHHhhhhHHHHHHHHhhchhHHHHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhH
Q 004661          526 KVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDF  605 (739)
Q Consensus       526 ~aQ~~~les~~~ErdaArle~~aA~ERak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~~l  605 (739)
                      .---.++.++.++...+--...+..++--.|=-++--.|.++-.|.++.=.|+-+++..+..+....+++..++.|+..+
T Consensus       297 ~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~  376 (775)
T PF10174_consen  297 SRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRL  376 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666666666666666666666667777777777778888888888888888888888888888888888888888887


Q ss_pred             HHHHHHHHHHHHHHHHHHHhh
Q 004661          606 QSTIEALQEEKKMMQSKLRKA  626 (739)
Q Consensus       606 qs~i~ALQEEKKlLqskLRka  626 (739)
                      ...|+-|.+.-..-..+++.+
T Consensus       377 ~~Ei~~l~d~~d~~e~ki~~L  397 (775)
T PF10174_consen  377 QGEIEDLRDMLDKKERKINVL  397 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            777777765544444444433

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription

Probab=94.32  E-value=5.7  Score=39.02  Aligned_cols=33  Identities=24%  Similarity=0.259  Sum_probs=25.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004661          463 AALEQHIEDLTQEKFALQRSLEASRALSESLAA  495 (739)
Q Consensus       463 aaLqQhIeDLT~EKfaLqR~L~~q~~l~EsLA~  495 (739)
                      .+|+|+|.||-..=-.+.++++++......|..
T Consensus        26 ~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~   58 (221)
T PF04012_consen   26 KMLEQAIRDMEEQLRKARQALARVMANQKRLER   58 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            899999999988877777777776666555543

The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].

>PF13514 AAA_27: AAA domain

Probab=94.29  E-value=6.7  Score=47.43  Aligned_cols=49  Identities=18%  Similarity=0.442  Sum_probs=41.9

Q ss_pred             HHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhCCCCccc
Q 004661          586 SEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKSID  634 (739)
Q Consensus       586 ~E~~s~~rqvsslekeR~~lqs~i~ALQEEKKlLqskLRka~a~~k~~~  634 (739)
                      ..|..+++....+++++..++.-++.+.++...+..+++.+..+|..++
T Consensus       452 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~t  500 (1111)
T PF13514_consen  452 ETVEAFRAEFEELERQLRRARDRLEELEEELARLEARLRRLAAAGDVPT  500 (1111)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            5678888888888888888888889999999999999999999887655

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=94.27  E-value=3.4  Score=50.46  Aligned_cols=60  Identities=27%  Similarity=0.427  Sum_probs=28.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHH-HHHHHHHhHHHHHHHH
Q 004661          511 VNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAK-ILASEVIGLEEKALRL  570 (739)
Q Consensus       511 v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak-~LAAEVV~LEEk~LqL  570 (739)
                      +++++.++.+.+.+++.....+..+..++.+.+.++..+.+..+ .+-.++-.|+.++.++
T Consensus       637 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~  697 (1201)
T PF12128_consen  637 IEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEAKEERKEQIEEQLNELEEELKQL  697 (1201)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444445555555555555555555443332 3333344444444333

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=94.25  E-value=1.5  Score=51.49  Aligned_cols=106  Identities=20%  Similarity=0.290  Sum_probs=76.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHHHHHHHHHhHHHH-------HHHHhhhHHHhHH
Q 004661          507 QRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEK-------ALRLRSNELKLER  579 (739)
Q Consensus       507 Q~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak~LAAEVV~LEEk-------~LqLRS~eLKlEr  579 (739)
                      -...+...+.+.+||...........+.+..||...|-+.-++-.|=.+|-.+.-.|||.       |--||++-+    
T Consensus        46 ~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~Lk~sQv----  121 (717)
T PF09730_consen   46 LRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQVSVLKQSQV----  121 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHH----
Confidence            445566667777778777778888888888999999999999999999998887777764       555666655    


Q ss_pred             HhhhhhHHHHHHH-------HHhhhHHHhh----hhHHHHHHHHHHHH
Q 004661          580 QLENSQSEISSYK-------KKISSLEKER----QDFQSTIEALQEEK  616 (739)
Q Consensus       580 ele~l~~E~~s~~-------rqvsslekeR----~~lqs~i~ALQEEK  616 (739)
                      |.|+++.||+++.       .|+.-+.+=|    ..|...+++||.|+
T Consensus       122 efE~~Khei~rl~Ee~~~l~~qlee~~rLk~iae~qleEALesl~~ER  169 (717)
T PF09730_consen  122 EFEGLKHEIKRLEEEIELLNSQLEEAARLKEIAEKQLEEALESLKSER  169 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556666666654       4555444333    24777888898665

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>PRK11281 hypothetical protein; Provisional

Probab=94.23  E-value=1.4  Score=53.81  Aligned_cols=41  Identities=15%  Similarity=0.179  Sum_probs=16.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHH
Q 004661          512 NQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADER  552 (739)
Q Consensus       512 ~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ER  552 (739)
                      .++..++++.|+++...-..+.+....-.+||..-.+|..|
T Consensus       131 ~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~R  171 (1113)
T PRK11281        131 AQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQR  171 (1113)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHH
Confidence            33333333444333333333333333333444444444444

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]

Probab=94.11  E-value=6.6  Score=46.67  Aligned_cols=45  Identities=27%  Similarity=0.293  Sum_probs=28.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHH
Q 004661          465 LEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRS  509 (739)
Q Consensus       465 LqQhIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~  509 (739)
                      ++..|+-|+-|+-.--..+..+|.+++.|...|-++-..||.-.+
T Consensus       521 ~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~  565 (961)
T KOG4673|consen  521 LQETIEKHQAELTRQKDYYSNSRALAAALEAQALAEQATNDEARS  565 (961)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhh
Confidence            334566666666666666666666676666666666666665554

>PF12795 MscS_porin: Mechanosensitive ion channel porin domain

Probab=93.99  E-value=4.4  Score=40.68  Aligned_cols=155  Identities=19%  Similarity=0.247  Sum_probs=92.4

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH-HhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004661          459 NEDFAALEQHIEDLTQEKFALQRSLEASRAL----SESLA-AENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELE  533 (739)
Q Consensus       459 ~~~faaLqQhIeDLT~EKfaLqR~L~~q~~l----~EsLA-~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le  533 (739)
                      ..+-+.|++.|++...+--.+++.|++-..-    .+.++ .--+.|..+.++.-..+.+++.++-.+..++..+....+
T Consensus        37 ~~~~~~~~~~i~~aP~~~~~l~~~l~~l~~~~~~~~~~~~~~s~~eLeq~l~~~~~~L~~~q~~l~~~~~~l~~~~~~p~  116 (240)
T PF12795_consen   37 KKRAAEYQKQIDQAPKEIRELQKELEALKSQDAPSKEILANLSLEELEQRLSQEQAQLQELQEQLQQENSQLIEIQTRPE  116 (240)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHhhhccccccccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHH
Confidence            3455677888888888888888877766432    11111 012456677777777777788888877777777777777


Q ss_pred             hhHHHHHHHHhhchhHHHHHH----------------HHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhh
Q 004661          534 SFRNEYANVRLECNAADERAK----------------ILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISS  597 (739)
Q Consensus       534 s~~~ErdaArle~~aA~ERak----------------~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvss  597 (739)
                      .+......++.....+..+-.                .|-+|+..|+.++..|+-.-+=.-.--+=++..++-+.+++.-
T Consensus       117 ~aq~~l~~~~~~l~ei~~~L~~~~~~~~~~l~~a~~~~l~ae~~~l~~~~~~le~el~s~~~rq~L~~~qrdl~~~~~~~  196 (240)
T PF12795_consen  117 RAQQQLSEARQRLQEIRNQLQNLPPNGESPLSEAQRWLLQAELAALEAQIEMLEQELLSNNNRQELLQLQRDLLKARIQR  196 (240)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHH
Confidence            777777777666666655533                3444555555444444332222211112233344445566666


Q ss_pred             HHHhhhhHHHHHHHHH
Q 004661          598 LEKERQDFQSTIEALQ  613 (739)
Q Consensus       598 lekeR~~lqs~i~ALQ  613 (739)
                      ++...+.|+..|+..+
T Consensus       197 l~~~l~~Lq~~ln~~R  212 (240)
T PF12795_consen  197 LQQQLQALQNLLNQKR  212 (240)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            6666667777766655

>KOG0243 consensus Kinesin-like protein [Cytoskeleton]

Probab=93.97  E-value=2.9  Score=51.00  Aligned_cols=138  Identities=28%  Similarity=0.324  Sum_probs=98.6

Q ss_pred             HHHHHHHHHHHHHhhhHHHHH-------HHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHHH
Q 004661          483 LEASRALSESLAAENSSLTDS-------YNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKI  555 (739)
Q Consensus       483 L~~q~~l~EsLA~ENsaLTd~-------yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak~  555 (739)
                      +....+..++|..|-+++-++       |+-|-..-..|+.+.++|+..++-...+++.+..|+.-++....        
T Consensus       443 ~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~--------  514 (1041)
T KOG0243|consen  443 KKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKATLK--------  514 (1041)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence            334444555555555555444       44444445599999999999999999999999999988765433        


Q ss_pred             HHHHHHh----HHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhCCCC
Q 004661          556 LASEVIG----LEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGK  631 (739)
Q Consensus       556 LAAEVV~----LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQEEKKlLqskLRka~a~~k  631 (739)
                      +.-|||.    +|+++.+.   ..++++.+++...+++.+-+++....+.=++=+..+.-++.+-..+.+-|-+.-+...
T Consensus       515 ~~e~ii~~~~~se~~l~~~---a~~l~~~~~~s~~d~s~l~~kld~~~~~~d~n~~~~~~~~~~l~~~~~~~~~~v~~~~  591 (1041)
T KOG0243|consen  515 EEEEIISQQEKSEEKLVDR---ATKLRRSLEESQDDLSSLFEKLDRKDRLDDDNQEVIDDFQSQLSENLSTLHGLVASSS  591 (1041)
T ss_pred             HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhhhccccccHHHHHHHhhhhhHHHHHHHHHHhhhh
Confidence            3334443    44454444   7889999999999999999999988888888888888888776555555555544443

>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins

Probab=93.93  E-value=7.2  Score=38.93  Aligned_cols=133  Identities=20%  Similarity=0.262  Sum_probs=74.8

Q ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHH------------hHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhc
Q 004661          479 LQRSLEASRALSESLAAENSSLTDSYNQ------------QRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLEC  546 (739)
Q Consensus       479 LqR~L~~q~~l~EsLA~ENsaLTd~yNq------------Q~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~  546 (739)
                      |.+++..-..-++.+|..+..+......            +......+...+++++...+.+...|+..+..|+++-.+.
T Consensus        58 l~~a~~~i~~e~e~~a~~H~~~a~~L~~~v~~~l~~~~~~~~~~rK~~~~~~~k~~k~~~~~~~~l~KaK~~Y~~~c~~~  137 (236)
T cd07651          58 LKNSLDTLRLETESMAKSHLKFAKQIRQDLEEKLAAFASSYTQKRKKIQSHMEKLLKKKQDQEKYLEKAREKYEADCSKI  137 (236)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            4444444444455555555555544442            2333445566667777777888888888888888877766


Q ss_pred             hhHHHHHHH-HHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHH--HHHH
Q 004661          547 NAADERAKI-LASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQ--EEKK  617 (739)
Q Consensus       547 ~aA~ERak~-LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQ--EEKK  617 (739)
                      ..+...... ...|+=-++.|+.+...+.-+.+++...+..+...++..-.      .++-.+.+.||  ||.|
T Consensus       138 e~~~~~~~~~~~ke~eK~~~k~~k~~~~~~~~~~~Y~~~v~~~~~~~~~~~------~~~~~~~~~~Q~lEe~R  205 (236)
T cd07651         138 NSYTLQSQLTWGKELEKNNAKLNKAQSSINSSRRDYQNAVKALRELNEIWN------REWKAALDDFQDLEEER  205 (236)
T ss_pred             HHHHHHHcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHH
Confidence            655544322 22455555555555555555555554444444444433222      45677888888  4543

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation

>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89

Probab=93.85  E-value=0.46  Score=40.93  Aligned_cols=63  Identities=17%  Similarity=0.213  Sum_probs=54.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHHHHHHHHHhHHHHHHH
Q 004661          507 QRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALR  569 (739)
Q Consensus       507 Q~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak~LAAEVV~LEEk~Lq  569 (739)
                      ....+..|+..+.++.+.+.++..++..+..|||.|......|-+...-|-+||-.|...+-.
T Consensus         3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~   65 (69)
T PF14197_consen    3 LEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEE   65 (69)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            346788999999999999999999999999999999999999998888888887777666433

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=93.80  E-value=8.9  Score=44.57  Aligned_cols=59  Identities=15%  Similarity=0.295  Sum_probs=25.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 004661          466 EQHIEDLTQEKFALQRSLEAS----RALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEE  524 (739)
Q Consensus       466 qQhIeDLT~EKfaLqR~L~~q----~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~E  524 (739)
                      .+-|+.|+-||..|---|..-    +.-+..|..++..|...=......|.+|.+.+..|+.+
T Consensus         3 ~e~l~qlq~Erd~ya~~lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q   65 (617)
T PF15070_consen    3 MESLKQLQAERDQYAQQLKEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQ   65 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            344455555554433333222    22233444444444444444444444444444444433

>PRK10476 multidrug resistance protein MdtN; Provisional

Probab=93.76  E-value=1.9  Score=44.67  Aligned_cols=11  Identities=18%  Similarity=0.434  Sum_probs=6.4

Q ss_pred             hhhCCCCcccc
Q 004661          625 KASGSGKSIDF  635 (739)
Q Consensus       625 ka~a~~k~~~~  635 (739)
                      +|+..|.....
T Consensus       212 ~AP~dG~V~~~  222 (346)
T PRK10476        212 RAPFDGRVVGL  222 (346)
T ss_pred             ECCCCcEEEee
Confidence            45666665544

>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.74  E-value=9.7  Score=44.48  Aligned_cols=153  Identities=17%  Similarity=0.229  Sum_probs=91.5

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH---hhhh
Q 004661          459 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVE---LESF  535 (739)
Q Consensus       459 ~~~faaLqQhIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~---les~  535 (739)
                      ......|++-|+-||+|=-.--++-.++-+--=.|-.|-+.|-.+|-+.-.....++.+|+++++-+.....-   ...-
T Consensus         7 eq~ve~lr~eierLT~el~q~t~e~~qaAeyGL~lLeeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hkk~~~~   86 (772)
T KOG0999|consen    7 EQEVEKLRQEIERLTEELEQTTEEKIQAAEYGLELLEEKEDLKQQLEELEAEYDLARTELDQTKEALGQYRSQHKKVARD   86 (772)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            4456778888888888877777776666666667778888888888777777777777777777655433322   1111


Q ss_pred             HHHHHHHHhhchhHHHHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHH
Q 004661          536 RNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQ  613 (739)
Q Consensus       536 ~~ErdaArle~~aA~ERak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQ  613 (739)
                      -.||.-+-+.--+|.|-.  +---|..||..+-++|-..-.-+.|.+.+-...+.+..--..++.+|..|.+.|..+.
T Consensus        87 g~e~EesLLqESaakE~~--yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~K  162 (772)
T KOG0999|consen   87 GEEREESLLQESAAKEEY--YLQKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYK  162 (772)
T ss_pred             chhhHHHHHHHHHHhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHH
Confidence            234444444444444432  2223555665555555444444444444444444444444566777777777776544

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=93.67  E-value=8.4  Score=49.58  Aligned_cols=161  Identities=24%  Similarity=0.347  Sum_probs=104.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------HHHHHhhhHH-------HHHHHH
Q 004661          461 DFAALEQHIEDLTQEKFALQRSLEASRALS---------------------------ESLAAENSSL-------TDSYNQ  506 (739)
Q Consensus       461 ~faaLqQhIeDLT~EKfaLqR~L~~q~~l~---------------------------EsLA~ENsaL-------Td~yNq  506 (739)
                      |-++|.|-++-+.++-..|+|.|-+.++-.                           -.|-.||.+.       .+.+|.
T Consensus      1175 e~~~L~qq~~~~~k~i~dL~~sL~~~r~~~q~~a~s~~e~~~i~~~v~~vNll~EsN~~LRee~~~~~~k~qEl~~~i~k 1254 (1822)
T KOG4674|consen 1175 ENARLKQQVASLNRTIDDLQRSLTAERASSQKSAVSDDEHKEILEKVEEVNLLRESNKVLREENEANLEKIQELRDKIEK 1254 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            556777888888888888888877666544                           1234445444       444444


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHH--------HHHHHHHHHhHHHHHHHHhhhHHHhH
Q 004661          507 QRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADER--------AKILASEVIGLEEKALRLRSNELKLE  578 (739)
Q Consensus       507 Q~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ER--------ak~LAAEVV~LEEk~LqLRS~eLKlE  578 (739)
                      ..-.+.-|+..+.+|..+|..-.+++.-++.|-+.-++++++--+.        -+.|.+|+=.|++.+-       -.+
T Consensus      1255 l~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~kL~~ei~~Lk~el~-------~ke 1327 (1822)
T KOG4674|consen 1255 LNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKNDYEKLKSEISRLKEELE-------EKE 1327 (1822)
T ss_pred             HHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHH-------HHH
Confidence            4455555555556666666677777888888888888888877665        5667777777776654       234


Q ss_pred             HHhhhhhHHHHHHH----HHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhC
Q 004661          579 RQLENSQSEISSYK----KKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASG  628 (739)
Q Consensus       579 rele~l~~E~~s~~----rqvsslekeR~~lqs~i~ALQEEKKlLqskLRka~a  628 (739)
                      +.++++..+..+++    .++-.+..+++.+...|+.+-+=+..|-..+...-+
T Consensus      1328 ~~~~el~~~~~~~q~~~k~qld~l~~e~~~lt~~~~ql~~~~~rL~~~~~e~~~ 1381 (1822)
T KOG4674|consen 1328 NLIAELKKELNRLQEKIKKQLDELNNEKANLTKELEQLEDLKTRLAAALSEKNA 1381 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555555555555    677777777777777777666655555555554443

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=93.63  E-value=8.5  Score=49.55  Aligned_cols=155  Identities=25%  Similarity=0.343  Sum_probs=85.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhh---HH
Q 004661          461 DFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESF---RN  537 (739)
Q Consensus       461 ~faaLqQhIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~---~~  537 (739)
                      +|.-|--|.+.++.++--|.+.+.+-....+.|-++++.+-..==+.--.+..++.++|.|+.++.-....|...   ..
T Consensus        81 e~s~l~~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~se~~~qkr~l~~~le~~~~ele~l~~~n~~l~~ql~ss~~~~~  160 (1822)
T KOG4674|consen   81 ELSDLRNELEQLSSERSNLSWEIDALKLENSQLRRAKSELQEQKRQLMELLERQKAELEALESENKDLNDQLKSSTKTLS  160 (1822)
T ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444555666666677777777777766666666666666652111111112222334444444443333333222   22


Q ss_pred             HHHHHHhhchhHH------------------HHHHHHHHHHHhHHHHHHHHhhh----HHHhHHHhhhhhHHHHHHHHHh
Q 004661          538 EYANVRLECNAAD------------------ERAKILASEVIGLEEKALRLRSN----ELKLERQLENSQSEISSYKKKI  595 (739)
Q Consensus       538 ErdaArle~~aA~------------------ERak~LAAEVV~LEEk~LqLRS~----eLKlErele~l~~E~~s~~rqv  595 (739)
                      |..+-.++|.+.+                  --+..|.-|.-.-=++.+.+|-.    .+.|+..|.++..+...|..++
T Consensus       161 e~e~r~~e~~s~~vs~q~k~~rl~QEksll~s~~~wL~~eL~~~~ekll~~~re~s~~~~~L~~~L~~~~~~~~~~q~~~  240 (1822)
T KOG4674|consen  161 ELEARLQETQSEDVSSQLKEERLEQEKSLLESENKWLSRELSKVNEKLLSLRREHSIEVEQLEEKLSDLKESLAELQEKN  240 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2222233332222                  22333444444444666667766    7777777888888888888888


Q ss_pred             hhHHHhhhhHHHHHHHHHHH
Q 004661          596 SSLEKERQDFQSTIEALQEE  615 (739)
Q Consensus       596 sslekeR~~lqs~i~ALQEE  615 (739)
                      ..+...+.+|...|.-+..+
T Consensus       241 ~~l~q~~~eLs~~ie~~~~~  260 (1822)
T KOG4674|consen  241 KSLKQQNEELSKKIESLNLE  260 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            88888888887766665544

>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=93.61  E-value=5  Score=45.39  Aligned_cols=115  Identities=24%  Similarity=0.254  Sum_probs=77.1

Q ss_pred             HHHhhhHHHHHHHHhHH-------HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHHHHHHHHHhHHH
Q 004661          493 LAAENSSLTDSYNQQRS-------VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEE  565 (739)
Q Consensus       493 LA~ENsaLTd~yNqQ~~-------~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak~LAAEVV~LEE  565 (739)
                      |-.||-.|.-|||..--       ...+--.+-++.++||-+-....+++..|--.         -|-+.|+-|+-.|-.
T Consensus       248 lkqEnlqLvhR~h~LEEq~reqElraeE~l~Ee~rrhrEil~k~eReasle~Enlq---------mr~qqleeentelRs  318 (502)
T KOG0982|consen  248 LKQENLQLVHRYHMLEEQRREQELRAEESLSEEERRHREILIKKEREASLEKENLQ---------MRDQQLEEENTELRS  318 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHH
Confidence            44466666666665333       33333334445555555444444444444322         366788889999999


Q ss_pred             HHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHH
Q 004661          566 KALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEK  616 (739)
Q Consensus       566 k~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQEEK  616 (739)
                      -+-+||+.+=|+..+.+...++++.++-|+.-..+.|-.+-..+-..|+||
T Consensus       319 ~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~Lrrfq~ek  369 (502)
T KOG0982|consen  319 LIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDILRRFQEEK  369 (502)
T ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            999999999999999888888888888888877777777766666666665

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=93.56  E-value=7.9  Score=43.85  Aligned_cols=143  Identities=16%  Similarity=0.308  Sum_probs=95.2

Q ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHHH
Q 004661          479 LQRSLEASRALSESLAAENSSLTDSYN---QQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKI  555 (739)
Q Consensus       479 LqR~L~~q~~l~EsLA~ENsaLTd~yN---qQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak~  555 (739)
                      +..-|...++.+..|..|-+.|..+|-   .-...+.++..+++.++..+..-...++.-..=|-..+-......++-..
T Consensus       311 l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~  390 (560)
T PF06160_consen  311 LYEYLEHAKEQNKELKEELERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEE  390 (560)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHH
Confidence            444555666666666666666666662   22334455555555555555544444444455555666666777778888


Q ss_pred             HHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhH-------HHHHHHHHHHHHHHHHHHHhh
Q 004661          556 LASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDF-------QSTIEALQEEKKMMQSKLRKA  626 (739)
Q Consensus       556 LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~~l-------qs~i~ALQEEKKlLqskLRka  626 (739)
                      +-.+...+-+.+..||.+|.+++..+..++..++..+|.++     |.+|       ...+....++-..|...|.+.
T Consensus       391 ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~le-----k~nLPGlp~~y~~~~~~~~~~i~~l~~~L~~~  463 (560)
T PF06160_consen  391 IEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLE-----KSNLPGLPEDYLDYFFDVSDEIEELSDELNQV  463 (560)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HcCCCCCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            88899999999999999999999999999999999999986     3333       344455555555555555443

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=93.54  E-value=2.5  Score=51.55  Aligned_cols=118  Identities=29%  Similarity=0.404  Sum_probs=71.5

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHhhhh---HHHHHHHHhhchhHH---------------------HHHHHHHHHHH
Q 004661          506 QQRSVVNQLKSEMEKLQEEIKVQLVELESF---RNEYANVRLECNAAD---------------------ERAKILASEVI  561 (739)
Q Consensus       506 qQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~---~~ErdaArle~~aA~---------------------ERak~LAAEVV  561 (739)
                      +-...+..|+.++++|++|+.--+-.--.+   +.|.|+.+..+..++                     |=-++|-+|--
T Consensus       202 ~lr~eLddleae~~klrqe~~e~l~ea~ra~~yrdeldalre~aer~d~~ykerlmDs~fykdRveelkedN~vLleeke  281 (1195)
T KOG4643|consen  202 RLRNELDDLEAEISKLRQEIEEFLDEAHRADRYRDELDALREQAERPDTTYKERLMDSDFYKDRVEELKEDNRVLLEEKE  281 (1195)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhhcCCCccchhhhhhHHHHHHHHHHHhhhHHHHHHHH
Confidence            344556666667777777665444433333   334445554444443                     33334444444


Q ss_pred             hHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhC
Q 004661          562 GLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASG  628 (739)
Q Consensus       562 ~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQEEKKlLqskLRka~a  628 (739)
                      -|||++.+||-     +.+-..+..+|-.|++++--++-+|.-.|.-++.|++|-.-||..=++.-+
T Consensus       282 MLeeQLq~lra-----rse~~tleseiiqlkqkl~dm~~erdtdr~kteeL~eEnstLq~q~eqL~~  343 (1195)
T KOG4643|consen  282 MLEEQLQKLRA-----RSEGATLESEIIQLKQKLDDMRSERDTDRHKTEELHEENSTLQVQKEQLDG  343 (1195)
T ss_pred             HHHHHHHHHHh-----ccccCChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            45555554432     222234455667888999999999999999999999999888876655444

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=93.53  E-value=3.7  Score=44.49  Aligned_cols=34  Identities=18%  Similarity=0.124  Sum_probs=21.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004661          461 DFAALEQHIEDLTQEKFALQRSLEASRALSESLA  494 (739)
Q Consensus       461 ~faaLqQhIeDLT~EKfaLqR~L~~q~~l~EsLA  494 (739)
                      ....+.+.|.++.++...++..+...++..+.|.
T Consensus       198 ~~~~~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~  231 (498)
T TIGR03007       198 QEGDYYSEISEAQEELEAARLELNEAIAQRDALK  231 (498)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445666777777777777766666665555443

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>PF13514 AAA_27: AAA domain

Probab=93.47  E-value=7.9  Score=46.83  Aligned_cols=35  Identities=29%  Similarity=0.581  Sum_probs=19.8

Q ss_pred             HHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHH
Q 004661          578 ERQLENSQSEISSYKKKISSLEKERQDFQSTIEAL  612 (739)
Q Consensus       578 Erele~l~~E~~s~~rqvsslekeR~~lqs~i~AL  612 (739)
                      +.+++.+..++..++.++..+..++..+...+++|
T Consensus       895 ~~~l~~l~~~l~~l~~~~~~l~~~~~~~~~~l~~l  929 (1111)
T PF13514_consen  895 EAELEELEEELEELEEELEELQEERAELEQELEAL  929 (1111)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33445555555555666666666666665555554

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=93.46  E-value=5.1  Score=45.98  Aligned_cols=26  Identities=15%  Similarity=0.158  Sum_probs=13.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhhCC
Q 004661          604 DFQSTIEALQEEKKMMQSKLRKASGS  629 (739)
Q Consensus       604 ~lqs~i~ALQEEKKlLqskLRka~a~  629 (739)
                      .|+...++.++--..|..|+.++...
T Consensus       380 ~L~Re~~~~~~~Y~~ll~r~~e~~~~  405 (754)
T TIGR01005       380 ALQRDAAAKRQLYESYLTNYRQAASR  405 (754)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34444444444445666666666543

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []

Probab=93.28  E-value=1.6  Score=44.78  Aligned_cols=108  Identities=24%  Similarity=0.283  Sum_probs=49.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHH
Q 004661          510 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEIS  589 (739)
Q Consensus       510 ~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~  589 (739)
                      .|.++++++++.++++..+.-...-+..++.       -|.+-+..|..+.-.+|+-..+|+..--+.+++-+.|..++.
T Consensus        13 rL~q~eee~~~a~~~L~e~e~~a~~Leek~k-------~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~   85 (246)
T PF00769_consen   13 RLRQMEEEMRRAQEALEESEETAEELEEKLK-------QAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELR   85 (246)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555555555554444433333333333       333445567777777777777777766666665555655555


Q ss_pred             HHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 004661          590 SYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR  624 (739)
Q Consensus       590 s~~rqvsslekeR~~lqs~i~ALQEEKKlLqskLR  624 (739)
                      .+...+..|..++..-......||++-..-+..++
T Consensus        86 e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~  120 (246)
T PF00769_consen   86 EAEAEIARLEEESERKEEEAEELQEELEEAREDEE  120 (246)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555555555444444444444444433333333

Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.

>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins

Probab=93.27  E-value=8.2  Score=39.53  Aligned_cols=137  Identities=17%  Similarity=0.224  Sum_probs=74.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHH--------------------HHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 004661          478 ALQRSLEASRALSESLAAENSSLTDSYNQQRS--------------------VVNQLKSEMEKLQEEIKVQLVELESFRN  537 (739)
Q Consensus       478 aLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~--------------------~v~qLk~dmEqLq~Ei~aQ~~~les~~~  537 (739)
                      .|..++..-..-++.+|..+..|.++...+-.                    ....+...++.+|+.+..+...|+..+.
T Consensus        61 sl~~aw~~~~~e~e~~a~~H~~l~~~L~~~v~~~i~~~~~e~~~k~~~~~~ke~K~~e~~~~kaqk~~~~~~~~l~kaKk  140 (258)
T cd07655          61 TLETAWKGLLSEAERLSELHLSIRDKLLNDVVEEVKTWQKENYHKSMMGGFKETKEAEDGFAKAQKPWAKLLKKVEKAKK  140 (258)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            45555555666666666666666666655422                    2334445555666666666777777777


Q ss_pred             HHHHHHhhchhHHHHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhh----hHHHHHHHHH
Q 004661          538 EYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQ----DFQSTIEALQ  613 (739)
Q Consensus       538 ErdaArle~~aA~ERak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~----~lqs~i~ALQ  613 (739)
                      -|..+=.+...|....+..-+..-.-..++-+++..--|.+.+++..+   ..|+.+|..+.+.+.    +|-.+++.||
T Consensus       141 ~Y~~~cke~e~a~~~~~~~~~d~~~~~~eleK~~~k~~k~~~~~~~~~---~~Y~~~l~~~n~~~~~y~~~m~~~~~~~Q  217 (258)
T cd07655         141 AYHAACKAEKSAQKQENNAKSDTSLSPDQVKKLQDKVEKCKQEVSKTK---DKYEKALEDLNKYNPRYMEDMEQVFDKCQ  217 (258)
T ss_pred             HHHHHHHHHHHHHHHHHhcccCccCCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            777776555555555443221111112333333333333333333333   566666666665554    5677888888


Q ss_pred             --HHHH
Q 004661          614 --EEKK  617 (739)
Q Consensus       614 --EEKK  617 (739)
                        ||.|
T Consensus       218 ~lEe~R  223 (258)
T cd07655         218 EFEEKR  223 (258)
T ss_pred             HHHHHH
Confidence              4543

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce

>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway

Probab=93.27  E-value=4.5  Score=34.15  Aligned_cols=92  Identities=16%  Similarity=0.286  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHH-----HHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHH
Q 004661          516 SEMEKLQEEIKVQLVELESFRNEYANVRLECNAAD-----ERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISS  590 (739)
Q Consensus       516 ~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~-----ERak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s  590 (739)
                      ..|.+.++++......|+.+..+++.+...+....     .....+..-+-.|+..+.++       +++++.+..++..
T Consensus         5 ~~l~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~i~~~-------~~~~~~~~~~~~~   77 (123)
T PF02050_consen    5 QELAEAQQELQEAEEQLEQLQQERQEYQEQLSESQQGVSVAQLRNYQRYISALEQAIQQQ-------QQELERLEQEVEQ   77 (123)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----SGGGHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence            33444444444444444444444444444444444     33344444444455544444       4455555555566


Q ss_pred             HHHHhhhHHHhhhhHHHHHHHHHH
Q 004661          591 YKKKISSLEKERQDFQSTIEALQE  614 (739)
Q Consensus       591 ~~rqvsslekeR~~lqs~i~ALQE  614 (739)
                      ++..+.....++.-+..+.+.-++
T Consensus        78 ~r~~l~~a~~~~k~~e~L~e~~~~  101 (123)
T PF02050_consen   78 AREELQEARRERKKLEKLKERRRE  101 (123)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666666666666555555554443

Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.

>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]

Probab=93.19  E-value=12  Score=44.23  Aligned_cols=116  Identities=25%  Similarity=0.322  Sum_probs=65.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHHHHHHHHHhHHHHHHHHhhhH---------HHhHHHhh
Q 004661          512 NQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNE---------LKLERQLE  582 (739)
Q Consensus       512 ~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak~LAAEVV~LEEk~LqLRS~e---------LKlErele  582 (739)
                      .++.+-+-.++.++..|-.++..++.+.++..-++..-..+.+..+-.|+.++++.+.+.-..         |.+--|++
T Consensus       161 ~k~dss~s~~q~e~~~~~~~~~~~~s~l~~~eke~~~~~~ql~~~~q~~~~~~~~l~e~~~~~qq~a~~~~ql~~~~ele  240 (716)
T KOG4593|consen  161 NKLDSSLSELQWEVMLQEMRAKRLHSELQNEEKELDRQHKQLQEENQKIQELQASLEERADHEQQNAELEQQLSLSEELE  240 (716)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHH
Confidence            334444555666666677777777777777777777666666666666666666554432110         01111122


Q ss_pred             hhh-------HHHHHHHHHhhhHHHhhh---hHHHHHHHHHHHHHHHHHHHHhhh
Q 004661          583 NSQ-------SEISSYKKKISSLEKERQ---DFQSTIEALQEEKKMMQSKLRKAS  627 (739)
Q Consensus       583 ~l~-------~E~~s~~rqvsslekeR~---~lqs~i~ALQEEKKlLqskLRka~  627 (739)
                      .+.       .|...++++.+...-+-.   +.+.++.-||||.+.||++|+++-
T Consensus       241 ~i~~~~~dqlqel~~l~~a~~q~~ee~~~~re~~~tv~~LqeE~e~Lqskl~~~~  295 (716)
T KOG4593|consen  241 AINKNMKDQLQELEELERALSQLREELATLRENRETVGLLQEELEGLQSKLGRLE  295 (716)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence            111       222233333333332322   445678889999999999998763

>PRK01156 chromosome segregation protein; Provisional

Probab=93.18  E-value=16  Score=42.72  Aligned_cols=71  Identities=11%  Similarity=0.168  Sum_probs=34.9

Q ss_pred             HHhhhhHHHHHHHHhhchhHHHHHHHHHHHHHhH----------HHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHH
Q 004661          530 VELESFRNEYANVRLECNAADERAKILASEVIGL----------EEKALRLRSNELKLERQLENSQSEISSYKKKISSLE  599 (739)
Q Consensus       530 ~~les~~~ErdaArle~~aA~ERak~LAAEVV~L----------EEk~LqLRS~eLKlErele~l~~E~~s~~rqvssle  599 (739)
                      ..++....+++..+..+....++...+..++-.|          ++++.+++..--+++++++.++.++..++.++..+.
T Consensus       629 ~~le~~~~~l~~~~~~i~~~~~~i~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~l~~~i~~l~  708 (895)
T PRK01156        629 NNLNNKYNEIQENKILIEKLRGKIDNYKKQIAEIDSIIPDLKEITSRINDIEDNLKKSRKALDDAKANRARLESTIEILR  708 (895)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344455555555555555555554444444333          334455555545555555555554444444444443


Q ss_pred             H
Q 004661          600 K  600 (739)
Q Consensus       600 k  600 (739)
                      .
T Consensus       709 ~  709 (895)
T PRK01156        709 T  709 (895)
T ss_pred             h
Confidence            3

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=93.14  E-value=4.8  Score=46.35  Aligned_cols=129  Identities=24%  Similarity=0.286  Sum_probs=64.4

Q ss_pred             HHHHHHHHhhhHHHHHHHHhHHH----------------------HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhh
Q 004661          488 ALSESLAAENSSLTDSYNQQRSV----------------------VNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLE  545 (739)
Q Consensus       488 ~l~EsLA~ENsaLTd~yNqQ~~~----------------------v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle  545 (739)
                      +=|-.|.+||..|.-++|-..+.                      |.+-.++..+++.+|..-..+++.++.=+.-+..+
T Consensus        56 ekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~  135 (546)
T KOG0977|consen   56 EKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKE  135 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            33455666676666666654432                      22233334444444444444444444333334344


Q ss_pred             chhHHHHHH-------HHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHH
Q 004661          546 CNAADERAK-------ILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEK  616 (739)
Q Consensus       546 ~~aA~ERak-------~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQEEK  616 (739)
                      +..+.|..+       .+=||+=.+=-++..|..+.-.|.+|...|..++.+.++++..-..-|.+++..+..|-||-
T Consensus       136 ~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel  213 (546)
T KOG0977|consen  136 RRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEEL  213 (546)
T ss_pred             HhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            444444433       33444444444444444455555555555555556666666555555666666655555443

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=93.05  E-value=22  Score=42.28  Aligned_cols=44  Identities=20%  Similarity=0.437  Sum_probs=26.3

Q ss_pred             hhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 004661          584 SQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKAS  627 (739)
Q Consensus       584 l~~E~~s~~rqvsslekeR~~lqs~i~ALQEEKKlLqskLRka~  627 (739)
                      +......+..++..+.+++.++...++.+.++.+.++.++..+-
T Consensus       401 ~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  444 (908)
T COG0419         401 LSAALEEIQEELEELEKELEELERELEELEEEIKKLEEQINQLE  444 (908)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344445555555666666666666666666666666666543

>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family

Probab=93.00  E-value=8.9  Score=40.28  Aligned_cols=62  Identities=15%  Similarity=0.215  Sum_probs=29.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHh--hchhHHHHHHHHHHHHHhHHHHHHHHh
Q 004661          510 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRL--ECNAADERAKILASEVIGLEEKALRLR  571 (739)
Q Consensus       510 ~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArl--e~~aA~ERak~LAAEVV~LEEk~LqLR  571 (739)
                      .+.-++++++++++++..-..+|..|+.+..-.-.  ......+-...|-++.+.+|.++-.+|
T Consensus       171 a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~  234 (362)
T TIGR01010       171 TIAFAENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIRVQAQLAQLR  234 (362)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555566666666666655666666554432211  122223333444444444444444443

This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=92.95  E-value=19  Score=42.81  Aligned_cols=24  Identities=13%  Similarity=0.346  Sum_probs=10.5

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHH
Q 004661          505 NQQRSVVNQLKSEMEKLQEEIKVQ  528 (739)
Q Consensus       505 NqQ~~~v~qLk~dmEqLq~Ei~aQ  528 (739)
                      ++-...++++...+.+++..+...
T Consensus       596 ~~~~~~~~~l~~~~~~l~~~~~~~  619 (908)
T COG0419         596 KELKKKLKELEERLSQLEELLQSL  619 (908)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhh
Confidence            333333444444444444444444

>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins

Probab=92.92  E-value=9.9  Score=37.81  Aligned_cols=148  Identities=17%  Similarity=0.257  Sum_probs=80.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHh------------HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhh
Q 004661          478 ALQRSLEASRALSESLAAENSSLTDSYNQQ------------RSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLE  545 (739)
Q Consensus       478 aLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ------------~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle  545 (739)
                      .+..+...-..-++.+|..+..+.+.++.+            ......+..++++++.++......++..+.-|+.+-.+
T Consensus        62 s~~~aw~~i~~e~~~~a~~H~~~a~~l~~~v~~~l~~~~~~~~~~rK~~~~~~~kl~~~~~~~~~~l~kskk~Y~~~~ke  141 (251)
T cd07653          62 SSVKAFRSILNEVNDIAGQHELIAENLNSNVCKELKTLISELRQERKKHLSEGSKLQQKLESSIKQLEKSKKAYEKAFKE  141 (251)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455555555555666666666666666533            23344456677777777777787888878777777777


Q ss_pred             chhHHHHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhh-----hHHHHHHHHH--HHH--
Q 004661          546 CNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQ-----DFQSTIEALQ--EEK--  616 (739)
Q Consensus       546 ~~aA~ERak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~-----~lqs~i~ALQ--EEK--  616 (739)
                      ...|...-....+.-..=..++.+++...-|...+++.++   ..|..+|..+.+...     +|-.+++.||  ||.  
T Consensus       142 ~~~a~~k~~~~~~~~~~s~~~~eK~~~k~~k~~~~~~~a~---~~Y~~~l~~~N~~~~~~y~~~~p~~~~~~q~le~~ri  218 (251)
T cd07653         142 AEKAKQKYEKADADMNLTKADVEKAKANANLKTQAAEEAK---NEYAAQLQKFNKEQRQHYSTDLPQIFDKLQELDEKRI  218 (251)
T ss_pred             HHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHH
Confidence            6666543322221100001122233333333333444443   666777777766533     6777777777  333  


Q ss_pred             HHHHHHHHhhhC
Q 004661          617 KMMQSKLRKASG  628 (739)
Q Consensus       617 KlLqskLRka~a  628 (739)
                      ..|..-|...+-
T Consensus       219 ~~~k~~l~~~~~  230 (251)
T cd07653         219 NRTVELLLQAAE  230 (251)
T ss_pred             HHHHHHHHHHHH
Confidence            234444444443

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=92.90  E-value=4.7  Score=46.41  Aligned_cols=110  Identities=25%  Similarity=0.296  Sum_probs=82.7

Q ss_pred             HHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHH-------HH
Q 004661          463 AALEQHIEDL--------TQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEI-------KV  527 (739)
Q Consensus       463 aaLqQhIeDL--------T~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei-------~a  527 (739)
                      .+|+.-|+.|        +.=|..+.-.|..++.+.+.-+.+-..+-..+......+++|+..++..++++       ..
T Consensus        66 ~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~  145 (546)
T KOG0977|consen   66 RKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDD  145 (546)
T ss_pred             HHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence            4566666655        34477788889999999999999999999999999999999999888875554       44


Q ss_pred             HHHHhhhhHHHHHHHHhhchhHHHHHHHHHHHHHhHHHHHHHHhh
Q 004661          528 QLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRS  572 (739)
Q Consensus       528 Q~~~les~~~ErdaArle~~aA~ERak~LAAEVV~LEEk~LqLRS  572 (739)
                      ++..+..+.+|+.-+.-....-.+-.+.|-.|...|.+.+.++|+
T Consensus       146 ~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~  190 (546)
T KOG0977|consen  146 YLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARK  190 (546)
T ss_pred             HhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            556666777777777766666666666666676666666666654

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=92.74  E-value=0.032  Score=63.57  Aligned_cols=24  Identities=33%  Similarity=0.494  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHhhhCCCC
Q 004661          608 TIEALQEEKKMMQSKLRKASGSGK  631 (739)
Q Consensus       608 ~i~ALQEEKKlLqskLRka~a~~k  631 (739)
                      .++-|.||++-|+.||+.+-.-..
T Consensus       282 n~elLeEe~~sLq~kl~~~E~~~~  305 (722)
T PF05557_consen  282 NVELLEEEKRSLQRKLERLEELEE  305 (722)
T ss_dssp             ------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455566888888888887765443

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=92.63  E-value=16  Score=43.45  Aligned_cols=151  Identities=20%  Similarity=0.208  Sum_probs=87.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHH--HHHHHHH----------HHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 004661          461 DFAALEQHIEDLTQEKFALQR--SLEASRA----------LSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQ  528 (739)
Q Consensus       461 ~faaLqQhIeDLT~EKfaLqR--~L~~q~~----------l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ  528 (739)
                      +.-.|.|++.+++++..+=.|  ++.-..+          --+.+-..+.+|-..-=--|+.....++..-+|-+|+.-.
T Consensus       401 E~e~l~q~l~~~~k~e~~e~~k~~~d~~~r~~~~~~~~~e~Lqk~~~~~k~ll~e~~t~gsA~ed~Qeqn~kL~~el~ek  480 (698)
T KOG0978|consen  401 ETESLLQRLKALDKEERSEIRKQALDDAERQIRQVEELSEELQKKEKNFKCLLSEMETIGSAFEDMQEQNQKLLQELREK  480 (698)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344556777777766555444  2222222          1112222233333333345677777888888888888887


Q ss_pred             HHHhhhhHHHHHHHHhhchhHHHHHH--------------HHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHH
Q 004661          529 LVELESFRNEYANVRLECNAADERAK--------------ILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKK  594 (739)
Q Consensus       529 ~~~les~~~ErdaArle~~aA~ERak--------------~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rq  594 (739)
                      .-+.=.++.|++.+.+......+-=.              .+-..+..|||+...|-+.+=++.+++.-+..-++.+++.
T Consensus       481 dd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~  560 (698)
T KOG0978|consen  481 DDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKK  560 (698)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHH
Confidence            77777888888888887776655322              2333456677777777666666666655555555555555


Q ss_pred             hhhHHHhhhhHHHHHHH
Q 004661          595 ISSLEKERQDFQSTIEA  611 (739)
Q Consensus       595 vsslekeR~~lqs~i~A  611 (739)
                      +--+.+.+.+|+.-++-
T Consensus       561 ~~e~~~~~~~Lq~~~ek  577 (698)
T KOG0978|consen  561 AQEAKQSLEDLQIELEK  577 (698)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            55555555555444433

>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []

Probab=92.55  E-value=4.8  Score=41.42  Aligned_cols=16  Identities=31%  Similarity=0.358  Sum_probs=6.8

Q ss_pred             HHHHHHhHHHHHHHHh
Q 004661          556 LASEVIGLEEKALRLR  571 (739)
Q Consensus       556 LAAEVV~LEEk~LqLR  571 (739)
                      |++++-.++.++.+|+
T Consensus        80 Le~e~~e~~~~i~~l~   95 (246)
T PF00769_consen   80 LEQELREAEAEIARLE   95 (246)
T ss_dssp             -HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            4444444444444443

Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.

>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins

Probab=92.49  E-value=13  Score=37.46  Aligned_cols=126  Identities=20%  Similarity=0.270  Sum_probs=65.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHH-----------HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhc
Q 004661          478 ALQRSLEASRALSESLAAENSSLTDSYNQQRSVV-----------NQLKSEMEKLQEEIKVQLVELESFRNEYANVRLEC  546 (739)
Q Consensus       478 aLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v-----------~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~  546 (739)
                      .|..++..-..-++.+|.-+..|.++.+.....+           ..+...|+.++...+.+...|+..+.-|.++-.+.
T Consensus        57 sl~~aw~~i~~e~e~~a~~H~~la~~L~~~v~~l~~~~~~~~~~~K~~~~~~~k~qk~~~~~~~~l~KaKk~Y~~~C~e~  136 (239)
T cd07647          57 TLKSSWDSLRKETENVANAHIQLAQSLREEAEKLEEFREKQKEERKKTEDIMKRSQKNKKELYKKTMKAKKSYEQKCREK  136 (239)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555555555556666666666666555543333           33445566666666666667777777776665555


Q ss_pred             hhHHHH---HHHH--HHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhh----hhHHHHHHHHH
Q 004661          547 NAADER---AKIL--ASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKER----QDFQSTIEALQ  613 (739)
Q Consensus       547 ~aA~ER---ak~L--AAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR----~~lqs~i~ALQ  613 (739)
                      ..|...   ++..  ..|+=-|+.|+.+.+.+.-+.+          ..|+..|..++.-|    .++..+.+.+|
T Consensus       137 e~a~~~~~~~~~~~~~ke~eK~~~K~~k~~~~~~~a~----------~~Y~~~v~~l~~~~~~~~~~~~~~~~~~Q  202 (239)
T cd07647         137 DKAEQAYEKSSSGAQPKEAEKLKKKAAQCKTSAEEAD----------SAYKSSIGCLEDARVEWESEHATACQVFQ  202 (239)
T ss_pred             HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444322   2221  1244444444444443333333          34444554444444    34555677777

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=92.49  E-value=0.036  Score=63.16  Aligned_cols=62  Identities=27%  Similarity=0.411  Sum_probs=0.0

Q ss_pred             HHHhHHHHHHH---HhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHH
Q 004661          559 EVIGLEEKALR---LRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQ  620 (739)
Q Consensus       559 EVV~LEEk~Lq---LRS~eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQEEKKlLq  620 (739)
                      -.+.||+.+.+   +|+..-.+++++..++.+.....+++..++.|...|+..+++|++|+..|.
T Consensus       347 ~~~~LEeel~~~~~~~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~l~~eke~l~  411 (713)
T PF05622_consen  347 TKAMLEEELKKARALKSQLEEYKKQIQELEQKLSEESRRADKLEFENKQLEEKLEALEEEKERLQ  411 (713)
T ss_dssp             -----------------------------------------------------------------
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444433   232333334444444444444444444444455555555555555554443

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=92.47  E-value=24  Score=40.44  Aligned_cols=53  Identities=15%  Similarity=0.170  Sum_probs=27.4

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHH
Q 004661          458 HNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSV  510 (739)
Q Consensus       458 ~~~~faaLqQhIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~  510 (739)
                      ...++..|++-|+++..+.-.+...++..+.-.+.+..+-..+.+.|...|+.
T Consensus       207 ~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~  259 (650)
T TIGR03185       207 ILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGD  259 (650)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence            33455555555555555555554444444444444555555555555555444

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]

Probab=92.46  E-value=13  Score=38.32  Aligned_cols=50  Identities=22%  Similarity=0.289  Sum_probs=30.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHH
Q 004661          461 DFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSE  517 (739)
Q Consensus       461 ~faaLqQhIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~d  517 (739)
                      -+..|+|+|.|+-.+       |.+++.-+.++-+.--.+-++||+....+..++..
T Consensus        25 p~~~l~Q~ird~~~~-------l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~   74 (225)
T COG1842          25 PEKMLEQAIRDMESE-------LAKARQALAQAIARQKQLERKLEEAQARAEKLEEK   74 (225)
T ss_pred             HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            348999999998655       44444444444444555666676665555544443

>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans

Probab=92.36  E-value=4.6  Score=39.69  Aligned_cols=32  Identities=38%  Similarity=0.614  Sum_probs=28.3

Q ss_pred             hHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhC
Q 004661          597 SLEKERQDFQSTIEALQEEKKMMQSKLRKASG  628 (739)
Q Consensus       597 slekeR~~lqs~i~ALQEEKKlLqskLRka~a  628 (739)
                      .++.++++|+.-|+.||+|-|.|+.+++..+.
T Consensus        86 ~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~  117 (158)
T PF09744_consen   86 QWRQERKDLQSQVEQLEEENRQLELKLKNLSD  117 (158)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            67788999999999999999999999987665

Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=92.31  E-value=16  Score=45.66  Aligned_cols=124  Identities=19%  Similarity=0.214  Sum_probs=69.1

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHHHHHHHHHhHHHHHHHHhh----hH
Q 004661          499 SLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRS----NE  574 (739)
Q Consensus       499 aLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak~LAAEVV~LEEk~LqLRS----~e  574 (739)
                      .+...|++-...=-+.++.|.++.+.+.--...++..+.++..+...--.++.--.-+-.|+=.|++...+++.    .-
T Consensus       388 ~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~  467 (1293)
T KOG0996|consen  388 SLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEIL  467 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444555444444455555555555555555555555555555554445555555555566666555554432    23


Q ss_pred             HHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHH
Q 004661          575 LKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSK  622 (739)
Q Consensus       575 LKlErele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQEEKKlLqsk  622 (739)
                      .+++++-++++.|+...++.+.-+.++=..+.+.++-.+.|-+.|.++
T Consensus       468 ~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~  515 (1293)
T KOG0996|consen  468 DSLKQETEGIREEIEKLEKELMPLLKQVNEARSELDVAESELDILLSR  515 (1293)
T ss_pred             HHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455666666677777777776666666666666666666666555544

>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins

Probab=92.21  E-value=13  Score=36.91  Aligned_cols=126  Identities=16%  Similarity=0.234  Sum_probs=67.2

Q ss_pred             hhHHHHHHHHH----------HHHHHHHHHHHHHHHH-HHHHHHHHH-------hhhHHHHHHHHhHHHHHHHHHHHHHH
Q 004661          460 EDFAALEQHIE----------DLTQEKFALQRSLEAS-RALSESLAA-------ENSSLTDSYNQQRSVVNQLKSEMEKL  521 (739)
Q Consensus       460 ~~faaLqQhIe----------DLT~EKfaLqR~L~~q-~~l~EsLA~-------ENsaLTd~yNqQ~~~v~qLk~dmEqL  521 (739)
                      |.|..|.+|++          ++=.|+-++.+.-++. ++|+.....       ...++..-|+.--..+..+-..-+++
T Consensus         5 d~~~~l~~~~~~g~~~~~~l~~f~keRa~iE~eYak~L~kLa~k~~~~~~~~~~~~~s~~~aw~~i~~e~~~~a~~H~~~   84 (251)
T cd07653           5 DQFDNLEKHTQKGIDFLERYGKFVKERAAIEQEYAKKLRKLVKKYLPKKKEEDEYSFSSVKAFRSILNEVNDIAGQHELI   84 (251)
T ss_pred             hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555555543          3445666666655543 234433321       12355666666666666655555555


Q ss_pred             HHHHHHHH-HHhhhhHHHHHHHHhhchhHHHHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHH
Q 004661          522 QEEIKVQL-VELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEI  588 (739)
Q Consensus       522 q~Ei~aQ~-~~les~~~ErdaArle~~aA~ERak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~  588 (739)
                      -+.|..+. -.+..+..+....+-.+....   ..+-.++..+..++.+.|..--++.++++.++...
T Consensus        85 a~~l~~~v~~~l~~~~~~~~~~rK~~~~~~---~kl~~~~~~~~~~l~kskk~Y~~~~ke~~~a~~k~  149 (251)
T cd07653          85 AENLNSNVCKELKTLISELRQERKKHLSEG---SKLQQKLESSIKQLEKSKKAYEKAFKEAEKAKQKY  149 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555444 445555555544444443333   33455666666666666666666666666665433

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l

>TIGR02977 phageshock_pspA phage shock protein A

Probab=92.16  E-value=14  Score=37.03  Aligned_cols=48  Identities=23%  Similarity=0.322  Sum_probs=25.2

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhh
Q 004661          549 ADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKIS  596 (739)
Q Consensus       549 A~ERak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvs  596 (739)
                      ..+.+..|-.++-.++..|-+|+...-+|+++++.++.....+..++.
T Consensus        97 ~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~  144 (219)
T TIGR02977        97 AQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQ  144 (219)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444555555555555555555555555555555555444444443

Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.

>PRK11519 tyrosine kinase; Provisional

Probab=92.14  E-value=6.6  Score=45.44  Aligned_cols=24  Identities=13%  Similarity=0.058  Sum_probs=11.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhC
Q 004661          605 FQSTIEALQEEKKMMQSKLRKASG  628 (739)
Q Consensus       605 lqs~i~ALQEEKKlLqskLRka~a  628 (739)
                      |+..++..++--..|.+|+.++..
T Consensus       375 L~Re~~~~~~lY~~lL~r~~e~~i  398 (719)
T PRK11519        375 LTRDVESGQQVYMQLLNKQQELKI  398 (719)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhH
Confidence            333344444433455556655543

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=92.00  E-value=33  Score=42.01  Aligned_cols=29  Identities=17%  Similarity=0.100  Sum_probs=16.2

Q ss_pred             ccccccceeeecCCCCCCCCCccccccccCee
Q 004661           55 HHLEADRVRVTDLDGAGTSDGPDKAVVSLPLV   86 (739)
Q Consensus        55 ~~le~~~~~v~d~dga~~sdg~~~~v~~~~~~   86 (739)
                      .|+..=+|-..|--|+++   ..-+|..+||.
T Consensus        25 KH~Rt~I~gTh~eksa~~---FWt~ik~~PL~   53 (980)
T KOG0980|consen   25 KHVRTIIVGTHDEKSSKI---FWTTIKRQPLE   53 (980)
T ss_pred             hhhhheeeeecccccchh---HHHHhhccccc
Confidence            345555666666666644   33455566663

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=91.94  E-value=4.1  Score=41.14  Aligned_cols=61  Identities=20%  Similarity=0.277  Sum_probs=43.0

Q ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 004661          481 RSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYAN  541 (739)
Q Consensus       481 R~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~Erda  541 (739)
                      +.=.++++..+.+++|-..|.+.|-+...++..|+...++|+..+..|..+++.+..+.+.
T Consensus        35 ~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~   95 (251)
T PF11932_consen   35 QAAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQ   95 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3345566677777777777777777777777777777777777777777777777554443

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=91.81  E-value=16  Score=36.88  Aligned_cols=118  Identities=18%  Similarity=0.262  Sum_probs=94.4

Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHHHHHHHHHh
Q 004661          483 LEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIG  562 (739)
Q Consensus       483 L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak~LAAEVV~  562 (739)
                      |.-.+.-.+.|.-||-.|-.-.-.|...++...+.=..|-+-|..+.-++-.++..+-+++..+.++.-+-+-.-+|+.-
T Consensus        21 l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k  100 (194)
T PF15619_consen   21 LAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLK  100 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334445678889999999888898889888888888888888888899999999999999999999999999999999


Q ss_pred             HHHHHHHHhh--------hHHHhHHHhhhhhHHHHHHHHHhhhHHH
Q 004661          563 LEEKALRLRS--------NELKLERQLENSQSEISSYKKKISSLEK  600 (739)
Q Consensus       563 LEEk~LqLRS--------~eLKlErele~l~~E~~s~~rqvsslek  600 (739)
                      +++.+..|+-        +.-+|.++++.+..++..-++++..|++
T Consensus       101 ~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki~~Lek  146 (194)
T PF15619_consen  101 TKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEKKIQELEK  146 (194)
T ss_pred             HHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999988864        2335666777777777777777776665

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=91.80  E-value=20  Score=43.63  Aligned_cols=71  Identities=24%  Similarity=0.348  Sum_probs=38.2

Q ss_pred             HHHHHHHHhhchhHHH----HHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHH
Q 004661          536 RNEYANVRLECNAADE----RAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEA  611 (739)
Q Consensus       536 ~~ErdaArle~~aA~E----Rak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i~A  611 (739)
                      ..|.|-.++.-+.|+-    -.|.|-.||..|-.+.+-+|-.-|..++.++       .+..++..|||+|..+.--+..
T Consensus       297 qeeLd~lkqt~t~a~gdseqatkylh~enmkltrqkadirc~LlEarrk~e-------gfddk~~eLEKkrd~al~dvr~  369 (1265)
T KOG0976|consen  297 QEELDTLKQTRTRADGDSEQATKYLHLENMKLTRQKADIRCALLEARRKAE-------GFDDKLNELEKKRDMALMDVRS  369 (1265)
T ss_pred             HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-------chhHHHHHHHHHHHHHHHhHHH
Confidence            3444444444444443    3456666666666666666666655555554       4455555555555554444444


Q ss_pred             HH
Q 004661          612 LQ  613 (739)
Q Consensus       612 LQ  613 (739)
                      +|
T Consensus       370 i~  371 (1265)
T KOG0976|consen  370 IQ  371 (1265)
T ss_pred             HH
Confidence            44

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex

Probab=91.75  E-value=23  Score=42.28  Aligned_cols=80  Identities=26%  Similarity=0.394  Sum_probs=54.1

Q ss_pred             HHHHHHHHHHHHHh-------HHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHH
Q 004661          549 ADERAKILASEVIG-------LEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQS  621 (739)
Q Consensus       549 A~ERak~LAAEVV~-------LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQEEKKlLqs  621 (739)
                      ..|-+|.+-.||..       ||.+|-.||...=--.+-+++++.+-.-+++|+.+-.|.-.-+.--|+.||+|-.-++.
T Consensus       571 sEen~r~~e~e~~~k~kq~k~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~aE~kq~~~~eikVn~L~~E~e~~kk  650 (786)
T PF05483_consen  571 SEENARSIECEILKKEKQMKILENKCNNLRKQVENKNKNIEELQQENKALKKKITAESKQSNVYEIKVNKLQEELENLKK  650 (786)
T ss_pred             HHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33444555555543       55666666654444455566677777888888887777777888889999999888877


Q ss_pred             HHHhhhC
Q 004661          622 KLRKASG  628 (739)
Q Consensus       622 kLRka~a  628 (739)
                      +.-.+-.
T Consensus       651 ~~eE~~~  657 (786)
T PF05483_consen  651 KHEEETD  657 (786)
T ss_pred             HHHHHHH
Confidence            7665544

Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=91.73  E-value=6.2  Score=37.33  Aligned_cols=65  Identities=26%  Similarity=0.314  Sum_probs=47.6

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHH---HHHHHHHHhHHHHHHHH
Q 004661          506 QQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERA---KILASEVIGLEEKALRL  570 (739)
Q Consensus       506 qQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERa---k~LAAEVV~LEEk~LqL  570 (739)
                      --...|+.|+..+.+++-|+.+-...++.+..+||.++.+.....++.   +..+.++-.|+.++..|
T Consensus        13 ~~~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l   80 (120)
T PF12325_consen   13 PSVQLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEEL   80 (120)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345688999999999999999999999999999998887777666555   33344444444444333

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>TIGR03017 EpsF chain length determinant protein EpsF

Probab=91.66  E-value=21  Score=38.09  Aligned_cols=17  Identities=24%  Similarity=0.333  Sum_probs=9.3

Q ss_pred             HHHHHHhHHHHHHHHhh
Q 004661          556 LASEVIGLEEKALRLRS  572 (739)
Q Consensus       556 LAAEVV~LEEk~LqLRS  572 (739)
                      |-.+...||.++-.|+.
T Consensus       259 l~~~l~~le~~l~~l~~  275 (444)
T TIGR03017       259 LKTDIARAESKLAELSQ  275 (444)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            44555566666555543

Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=91.63  E-value=23  Score=38.37  Aligned_cols=94  Identities=20%  Similarity=0.345  Sum_probs=76.0

Q ss_pred             hhHHHHHHHHhhchhHHHHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHH
Q 004661          534 SFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQ  613 (739)
Q Consensus       534 s~~~ErdaArle~~aA~ERak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQ  613 (739)
                      .+.+|.|.-+-.+.+-.++...||-|.=..=+++.++...-=++++++++++.++-.+.+++..+..+.-.++.-|.-++
T Consensus       162 el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~~  241 (294)
T COG1340         162 ELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELE  241 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            34577788888888888899999998888888888888888888999999999999888888888888888877777777


Q ss_pred             HHHHHHHHHHHhhh
Q 004661          614 EEKKMMQSKLRKAS  627 (739)
Q Consensus       614 EEKKlLqskLRka~  627 (739)
                      ..-+.|..+.+.+.
T Consensus       242 k~ik~l~~~~~~~~  255 (294)
T COG1340         242 KKIKALRAKEKAAK  255 (294)
T ss_pred             HHHHHHHHHHHHHH
Confidence            66666666655543

>PRK10929 putative mechanosensitive channel protein; Provisional

Probab=91.58  E-value=20  Score=44.54  Aligned_cols=62  Identities=16%  Similarity=0.157  Sum_probs=37.8

Q ss_pred             HHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHH
Q 004661          551 ERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEAL  612 (739)
Q Consensus       551 ERak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i~AL  612 (739)
                      .+-..|-+|...|+.++..++-+-+-..+-.+=++..++-+++++..++++-+.||..|+..
T Consensus       173 a~~~~lqae~~~l~~~~~~l~~~l~s~~~~~~L~~~q~dl~~~~~~~l~~~~~~Lq~~in~k  234 (1109)
T PRK10929        173 AQLTALQAESAALKALVDELELAQLSANNRQELARLRSELAKKRSQQLDAYLQALRNQLNSQ  234 (1109)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34456677777777777766655554444444445555556666666666666666666653

>cd07680 F-BAR_PACSIN1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 1 (PACSIN1)

Probab=91.56  E-value=18  Score=37.90  Aligned_cols=103  Identities=21%  Similarity=0.261  Sum_probs=64.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHH
Q 004661          512 NQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSY  591 (739)
Q Consensus       512 ~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~  591 (739)
                      .++...++++|.-.....-.++.-+..|..+-.+...|..|-...-+..-.=-+++.+++-   |+++-...+..-...|
T Consensus       115 K~~e~~~~KaQK~~~k~~k~v~~sKk~Ye~~Cke~~~A~~~~~~a~~d~~~s~~q~eK~~~---k~~k~~~~~~~sk~~Y  191 (258)
T cd07680         115 KEAEDGFRKAQKPWAKKMKELEAAKKAYHLACKEEKLAMTREANSKAEQSVTPEQQKKLQD---KVDKCKQDVQKTQEKY  191 (258)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence            3467788888888888888888888888877777777776533222221111122333333   3333333333444788


Q ss_pred             HHHhhhHHHhhh----hHHHHHHHHH--HHHH
Q 004661          592 KKKISSLEKERQ----DFQSTIEALQ--EEKK  617 (739)
Q Consensus       592 ~rqvsslekeR~----~lqs~i~ALQ--EEKK  617 (739)
                      +..|..|.+.+.    +|-.+++.+|  ||+|
T Consensus       192 ~~~l~~ln~~~~~y~~~m~~vfd~~Q~~Ee~R  223 (258)
T cd07680         192 EKVLDDVGKTTPQYMENMEQVFEQCQQFEEKR  223 (258)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            999999998886    4677889998  5554

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 1 or Syndapin I is expressed specifically in the brain and is localized in neurites and synaptic boutons. It binds the brain-specific proteins dynamin I, synaptojanin, synapsin I, and neural Wiskott-Aldrich syndrome protein (nWASP), and functions as a link between the cytoskeletal machinery and synaptic vesicle endocytosis. PACSIN 1 interacts with huntingtin and may be implicated in the neuropatholog

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=91.48  E-value=30  Score=41.24  Aligned_cols=95  Identities=24%  Similarity=0.348  Sum_probs=49.9

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH-------hhchhHHHHHH--------------HHHHHH
Q 004661          502 DSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVR-------LECNAADERAK--------------ILASEV  560 (739)
Q Consensus       502 d~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaAr-------le~~aA~ERak--------------~LAAEV  560 (739)
                      +..+.|...+..+.+.+..+.....+-+++++.+-..|...|       ++-..++-...              .|--|-
T Consensus       426 d~~~r~~~~~~~~~e~Lqk~~~~~k~ll~e~~t~gsA~ed~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek  505 (698)
T KOG0978|consen  426 DDAERQIRQVEELSEELQKKEKNFKCLLSEMETIGSAFEDMQEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREEK  505 (698)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455666667777777777766666666666666544443322       23333333332              333445


Q ss_pred             HhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhh
Q 004661          561 IGLEEKALRLRSNELKLERQLENSQSEISSYKKKIS  596 (739)
Q Consensus       561 V~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvs  596 (739)
                      ..|++++++|....=+++..+..+....+.|...++
T Consensus       506 ~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~  541 (698)
T KOG0978|consen  506 SKLEEQILTLKASVDKLELKIGKLEEQERGLTSNES  541 (698)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhh
Confidence            556666666665555554444444444444333333

>PRK01156 chromosome segregation protein; Provisional

Probab=91.39  E-value=32  Score=40.38  Aligned_cols=53  Identities=13%  Similarity=0.219  Sum_probs=24.2

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhh
Q 004661          550 DERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKER  602 (739)
Q Consensus       550 ~ERak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR  602 (739)
                      .++-..+-.+.-.|++++-.|+..-=+++.+++.+...+..++.++..+.+..
T Consensus       673 ~~~~~~~~~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~~~~l~eel~~~~~~~  725 (895)
T PRK01156        673 TSRINDIEDNLKKSRKALDDAKANRARLESTIEILRTRINELSDRINDINETL  725 (895)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            33334444444445555555544444444444444444444444444333333

>PRK10246 exonuclease subunit SbcC; Provisional

Probab=91.31  E-value=42  Score=40.89  Aligned_cols=13  Identities=31%  Similarity=0.539  Sum_probs=6.6

Q ss_pred             hHHHHHHHHHHHH
Q 004661          461 DFAALEQHIEDLT  473 (739)
Q Consensus       461 ~faaLqQhIeDLT  473 (739)
                      ++..+++.++++.
T Consensus       531 ~l~~~~~~~~~~~  543 (1047)
T PRK10246        531 RLDALEKEVKKLG  543 (1047)
T ss_pred             HHHHHHHHHHHHH
Confidence            4555555555443

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=91.30  E-value=1.6  Score=39.30  Aligned_cols=67  Identities=18%  Similarity=0.287  Sum_probs=53.6

Q ss_pred             hHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhC
Q 004661          562 GLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASG  628 (739)
Q Consensus       562 ~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQEEKKlLqskLRka~a  628 (739)
                      .||+||.+.=-.--=|+-|+++++..-..+...+..+..-|..|....+.|++|....|.|||..-.
T Consensus         8 qLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLG   74 (79)
T PRK15422          8 KLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLG   74 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4888887765444456667777777777777788888888999999999999999999999997643

>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=91.20  E-value=12  Score=42.52  Aligned_cols=144  Identities=22%  Similarity=0.210  Sum_probs=84.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHH
Q 004661          473 TQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADER  552 (739)
Q Consensus       473 T~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ER  552 (739)
                      -+++..+-|-+..-++=|+.|.+.--+.-|+--.....+-+|.-..-+|++.++.|.+--+..-.|+..-.-+.-.-.||
T Consensus       214 ee~r~di~~kv~flerkv~eledd~~~~gd~~SrlkqEnlqLvhR~h~LEEq~reqElraeE~l~Ee~rrhrEil~k~eR  293 (502)
T KOG0982|consen  214 EEERIDIERKVRFLERKVQELEDDQNIAGDRSSRLKQENLQLVHRYHMLEEQRREQELRAEESLSEEERRHREILIKKER  293 (502)
T ss_pred             hchhhhHHHHHHHHHHHHHHhhcchhccccchhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444545444445555544332222333333344444555555555566666555555556666666666677777


Q ss_pred             HHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHH-------HHHHHHHHHHHh
Q 004661          553 AKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQ-------EEKKMMQSKLRK  625 (739)
Q Consensus       553 ak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQ-------EEKKlLqskLRk  625 (739)
                      -+.|  |+-.|+-|+.+|       +-+..+++..+-+++..+..|+-|+|.+...|++|.       ++++.+-.+||+
T Consensus       294 easl--e~Enlqmr~qql-------eeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~Lrr  364 (502)
T KOG0982|consen  294 EASL--EKENLQMRDQQL-------EEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDILRR  364 (502)
T ss_pred             HHHH--HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7665  343455555544       556667777778888888888888888777777765       445555556665

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=91.19  E-value=34  Score=40.04  Aligned_cols=97  Identities=23%  Similarity=0.247  Sum_probs=68.6

Q ss_pred             HHHHHH-HHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-------HH---HHhhhhHHHHHH
Q 004661          473 TQEKFA-LQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKV-------QL---VELESFRNEYAN  541 (739)
Q Consensus       473 T~EKfa-LqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~a-------Q~---~~les~~~Erda  541 (739)
                      ++||.+ |++.+.+.++.+.++-.-+.++.-..++-...+.+..+++|.|+.++..       |.   ..++.+..||..
T Consensus       264 lre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~  343 (581)
T KOG0995|consen  264 LREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNK  343 (581)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence            445555 9999999999999999999998888888888777777777777665432       21   344555667777


Q ss_pred             HHhhchhHHHHHHHHHHHHHhHHHHHHH
Q 004661          542 VRLECNAADERAKILASEVIGLEEKALR  569 (739)
Q Consensus       542 Arle~~aA~ERak~LAAEVV~LEEk~Lq  569 (739)
                      ...+.+.+.----.|-.||-.|+-++..
T Consensus       344 l~r~l~~i~~~~d~l~k~vw~~~l~~~~  371 (581)
T KOG0995|consen  344 LKRELNKIQSELDRLSKEVWELKLEIED  371 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            7777776666666666777666654443

>PRK10361 DNA recombination protein RmuC; Provisional

Probab=91.18  E-value=20  Score=40.85  Aligned_cols=102  Identities=19%  Similarity=0.264  Sum_probs=49.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHH
Q 004661          512 NQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSY  591 (739)
Q Consensus       512 ~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~  591 (739)
                      .+++.+.+++++++...+..+..+..+....+..          |..|--..+||...|.-.+-+|..+-++|..+|-.-
T Consensus        56 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~----------le~~~~~~~ek~~~l~~~~~~L~~~F~~LA~~ile~  125 (475)
T PRK10361         56 EHWRAECELLNNEVRSLQSINTSLEADLREVTTR----------MEAAQQHADDKIRQMINSEQRLSEQFENLANRIFEH  125 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444444444333222          223333346666666666667777777776665432


Q ss_pred             HHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 004661          592 KKKISSLEKERQDFQSTIEALQEEKKMMQSKLR  624 (739)
Q Consensus       592 ~rqvsslekeR~~lqs~i~ALQEEKKlLqskLR  624 (739)
                      +.+- =.+.-+..|..++.=|+|.-+.++.++.
T Consensus       126 k~~~-f~~~~~~~l~~ll~Pl~e~l~~f~~~v~  157 (475)
T PRK10361        126 SNRR-VDEQNRQSLNSLLSPLREQLDGFRRQVQ  157 (475)
T ss_pred             HHHH-HHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            2211 1133444555555555555555555444

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=91.16  E-value=31  Score=38.99  Aligned_cols=25  Identities=28%  Similarity=0.486  Sum_probs=10.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 004661          462 FAALEQHIEDLTQEKFALQRSLEAS  486 (739)
Q Consensus       462 faaLqQhIeDLT~EKfaLqR~L~~q  486 (739)
                      ++++++-|.+--+++-.|+..|...
T Consensus        47 i~~~~~~i~~~~~~~~kL~~~lk~~   71 (420)
T COG4942          47 IAALEKKIREQQDQRAKLEKQLKSL   71 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444444333

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=90.92  E-value=0.068  Score=62.76  Aligned_cols=127  Identities=19%  Similarity=0.315  Sum_probs=0.0

Q ss_pred             HHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHHHHHHHHHhHHHHHHHHh
Q 004661          492 SLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLR  571 (739)
Q Consensus       492 sLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak~LAAEVV~LEEk~LqLR  571 (739)
                      .|..|.+.++-..-.+...+.+|.....+|..++......++.+..|+|+++.+|..       +.+|++.|...+-.++
T Consensus       353 rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~-------~~te~~~Lk~~lee~~  425 (859)
T PF01576_consen  353 RLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAERDAAQREARE-------LETELFKLKNELEELQ  425 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHH-------HHHHHHHHHhhhHHHH
Confidence            355555555555555566666666666666666666666777777888887777654       4555555555555555


Q ss_pred             hhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHh
Q 004661          572 SNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRK  625 (739)
Q Consensus       572 S~eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQEEKKlLqskLRk  625 (739)
                      ...-.++|+...|..|+.-+..++....+...+|.-....|..|+..|+..|..
T Consensus       426 e~~e~lere~k~L~~El~dl~~q~~~~~k~v~eLek~kr~LE~e~~El~~~leE  479 (859)
T PF01576_consen  426 EQLEELERENKQLQDELEDLTSQLDDAGKSVHELEKAKRRLEQEKEELQEQLEE  479 (859)
T ss_dssp             ------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHhhccchhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555555555555555555555544444444444444444444444444433

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein

Probab=90.78  E-value=21  Score=38.31  Aligned_cols=36  Identities=25%  Similarity=0.398  Sum_probs=23.1

Q ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHH-----hhhCCCCcccc
Q 004661          600 KERQDFQSTIEALQEEKKMMQSKLR-----KASGSGKSIDF  635 (739)
Q Consensus       600 keR~~lqs~i~ALQEEKKlLqskLR-----ka~a~~k~~~~  635 (739)
                      .+...++..+..++.+...++..|.     +|+-.|....+
T Consensus       227 ~~~~~~~~~l~~~~~~l~~~~~~l~~~~~i~AP~dG~V~~~  267 (421)
T TIGR03794       227 KELETVEARIKEARYEIEELENKLNLNTRIVSQHSGRVIEL  267 (421)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEcCCCeEEEEe
Confidence            4555666667777777777777774     25677766554

Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.

>TIGR02473 flagell_FliJ flagellar export protein FliJ

Probab=90.57  E-value=13  Score=33.56  Aligned_cols=36  Identities=14%  Similarity=0.262  Sum_probs=17.3

Q ss_pred             HhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHH
Q 004661          576 KLERQLENSQSEISSYKKKISSLEKERQDFQSTIEA  611 (739)
Q Consensus       576 KlErele~l~~E~~s~~rqvsslekeR~~lqs~i~A  611 (739)
                      ..+..+..+..+++.++..+..+.+++.-|..+.+.
T Consensus        79 ~q~~~l~~~~~~~e~~r~~l~~a~~~~k~lekL~ek  114 (141)
T TIGR02473        79 QQQQELALLQQEVEAKRERLLEARRELKALEKLKEK  114 (141)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444455555555555555555444443

Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.

>cd07675 F-BAR_FNBP1L The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 1-Like

Probab=90.57  E-value=8.5  Score=40.31  Aligned_cols=138  Identities=12%  Similarity=0.180  Sum_probs=83.2

Q ss_pred             HHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHHHHHHHHHhHHHHHH
Q 004661          489 LSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKAL  568 (739)
Q Consensus       489 l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak~LAAEVV~LEEk~L  568 (739)
                      |+-+++.+-..+...|..++   ...-.+-..+|+++..+...|+..+..|+.|-.+.-.|..+-...=++.=.=...+.
T Consensus        89 l~~~v~~~l~~~~~~l~~~r---k~~~~~~~klqk~l~~~~~~leksKk~Y~~acke~E~A~~k~~ka~~d~~~tk~~~e  165 (252)
T cd07675          89 MGHRVYGELMRYSHDLKGER---KMHLQEGRKAQQYLDMCWKQMDNSKKKFERECREAEKAQQSYERLDNDTNATKSDVE  165 (252)
T ss_pred             HHHHHhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccCHHHHH
Confidence            33334444444454444432   222255678899999999999999999999988888887773332222111122223


Q ss_pred             HHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhh-----hHHHHHHHHH--HHHH--HHHHHHHhhhCCCCc
Q 004661          569 RLRSNELKLERQLENSQSEISSYKKKISSLEKERQ-----DFQSTIEALQ--EEKK--MMQSKLRKASGSGKS  632 (739)
Q Consensus       569 qLRS~eLKlErele~l~~E~~s~~rqvsslekeR~-----~lqs~i~ALQ--EEKK--lLqskLRka~a~~k~  632 (739)
                      ++|..-=+-...++..+   ..|..+|..+-+.-.     +|-.+++.||  ||+|  .|..-+..++..++.
T Consensus       166 K~k~~~~~~~q~~e~aK---n~Y~~~L~~~N~~q~k~Y~e~mP~vfd~lQ~leE~Ri~~l~e~~~~~~~~E~~  235 (252)
T cd07675         166 KAKQQLNLRTHMADESK---NEYAAQLQNFNGEQHKHFYIVIPQIYKQLQEMDERRTVKLSECYRGFADSERK  235 (252)
T ss_pred             HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34333333334444443   567777777755444     4888999999  5664  456667777766654

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FormiN Binding Protein 1-Like (FNBP1L), also known as Toca-1 (Transducer of Cdc42-dependent actin assembly), forms a complex with neural Wiskott-Aldrich syndrome protein (N-WASP). The FNBP1L/N-WASP complex induces the formation of filopodia and endocytic vesicles. FNBP1L is required for Cdc42-induced actin assembly and is essential for autophagy of intracellular pathogens. It contains an N-terminal F-BAR domain, a central Cdc42-binding HR1 domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=90.51  E-value=39  Score=39.07  Aligned_cols=11  Identities=18%  Similarity=0.525  Sum_probs=4.0

Q ss_pred             HHHHHHHHHHH
Q 004661          512 NQLKSEMEKLQ  522 (739)
Q Consensus       512 ~qLk~dmEqLq  522 (739)
                      .+|..++...+
T Consensus       240 ~~l~~ql~~a~  250 (754)
T TIGR01005       240 AELNTELSRAR  250 (754)
T ss_pred             HHHHHHHHHHH
Confidence            33333333333

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=90.44  E-value=31  Score=39.30  Aligned_cols=190  Identities=17%  Similarity=0.258  Sum_probs=131.4

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 004661          458 HNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRN  537 (739)
Q Consensus       458 ~~~~faaLqQhIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~  537 (739)
                      =..++..|++.|+++..-=-.|  .|..+.+..+.+.++-+.|-+.+=.....-..++..+..+.+-|....-....+..
T Consensus       250 i~~~i~~i~~~l~~~~~~L~~l--~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~  327 (560)
T PF06160_consen  250 IEEEIEQIEEQLEEALALLKNL--ELDEVEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKE  327 (560)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            3455666665555543321111  45677777788888877777777777766677777777788888888888888999


Q ss_pred             HHHHHHhhchhH---HHHHHHHHHHHHhHHHHHHHHh--------------hhHHHhHHHhhhhhHHHHHHHHHhhhHHH
Q 004661          538 EYANVRLECNAA---DERAKILASEVIGLEEKALRLR--------------SNELKLERQLENSQSEISSYKKKISSLEK  600 (739)
Q Consensus       538 ErdaArle~~aA---~ERak~LAAEVV~LEEk~LqLR--------------S~eLKlErele~l~~E~~s~~rqvsslek  600 (739)
                      |+++.++.+.=.   .++.+.|..++=.|+.+...+.              ..--++.++++.+..+...+...+..|.+
T Consensus       328 e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~  407 (560)
T PF06160_consen  328 ELERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRK  407 (560)
T ss_pred             HHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999988644   4678888888888888776653              23345667777777777888888888888


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHhhhCCCCccccCCCcccccCcccccccc
Q 004661          601 ERQDFQSTIEALQEEKKMMQSKLRKASGSGKSIDFGKTAASTVNASTSTEDL  652 (739)
Q Consensus       601 eR~~lqs~i~ALQEEKKlLqskLRka~a~~k~~~~~~~s~~~~DaSTsTedL  652 (739)
                      +=...+..+..++.+-...+.+|.+.-.-|-.-+.   -..+.+++...+.|
T Consensus       408 dE~~Ar~~l~~~~~~l~~ikR~lek~nLPGlp~~y---~~~~~~~~~~i~~l  456 (560)
T PF06160_consen  408 DEKEAREKLQKLKQKLREIKRRLEKSNLPGLPEDY---LDYFFDVSDEIEEL  456 (560)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHH---HHHHHHHHHHHHHH
Confidence            88888888888888877788888777665543221   12334455555554

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]

Probab=90.38  E-value=15  Score=43.08  Aligned_cols=89  Identities=15%  Similarity=0.177  Sum_probs=70.8

Q ss_pred             HhhchhHHHHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHH
Q 004661          543 RLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSK  622 (739)
Q Consensus       543 rle~~aA~ERak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQEEKKlLqsk  622 (739)
                      ...|....++-+.|-.++..|+.++..|+-.+.++.+++++...++.-.   +..|+..+..|.... +-+++.|.|+-+
T Consensus       233 ~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~L~~~~~~l~~~~-~e~~~r~kL~N~  308 (670)
T KOG0239|consen  233 EGLESTIKKKIQALQQELEELKAELKELNDQVSLLTREVQEALKESNTL---QSDLESLEENLVEKK-KEKEERRKLHNE  308 (670)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence            3345555666788889999999999999999999999998888555444   666667777777777 777899999999


Q ss_pred             HHhhhCCCCcccc
Q 004661          623 LRKASGSGKSIDF  635 (739)
Q Consensus       623 LRka~a~~k~~~~  635 (739)
                      +...-++-+++-.
T Consensus       309 i~eLkGnIRV~CR  321 (670)
T KOG0239|consen  309 ILELKGNIRVFCR  321 (670)
T ss_pred             HHHhhcCceEEEE
Confidence            9999998887554

>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A)

Probab=90.29  E-value=13  Score=37.92  Aligned_cols=31  Identities=16%  Similarity=0.041  Sum_probs=15.1

Q ss_pred             HHHHHHHHHHHHHHHH----hhhCCCCccccCCCc
Q 004661          609 IEALQEEKKMMQSKLR----KASGSGKSIDFGKTA  639 (739)
Q Consensus       609 i~ALQEEKKlLqskLR----ka~a~~k~~~~~~~s  639 (739)
                      +..++.+-+..+.+|.    +|+..|....+.-..
T Consensus       188 i~~~~~~l~~a~~~l~~~~I~AP~~G~V~~~~~~~  222 (334)
T TIGR00998       188 VQEAKERLKTAWLALKRTVIRAPFDGYVARRFVQV  222 (334)
T ss_pred             HHHHHHHHHHHHHHhhCcEEEcCCCcEEEEEecCC
Confidence            3333444444444444    457777765553333

>PRK10246 exonuclease subunit SbcC; Provisional

Probab=90.27  E-value=33  Score=41.73  Aligned_cols=17  Identities=12%  Similarity=0.067  Sum_probs=6.3

Q ss_pred             HHHHHHHHHHHHHHHHH
Q 004661          508 RSVVNQLKSEMEKLQEE  524 (739)
Q Consensus       508 ~~~v~qLk~dmEqLq~E  524 (739)
                      ...+..+...+..++++
T Consensus       730 ~~~l~~~~~~~~~~~~~  746 (1047)
T PRK10246        730 HSQLQTLQQQDVLEAQR  746 (1047)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33333333333333333

>cd07671 F-BAR_PSTPIP1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 1

Probab=90.25  E-value=24  Score=36.42  Aligned_cols=121  Identities=19%  Similarity=0.201  Sum_probs=77.5

Q ss_pred             HHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHHHHHHHHHhHHHHH
Q 004661          488 ALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKA  567 (739)
Q Consensus       488 ~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak~LAAEVV~LEEk~  567 (739)
                      .|++.|-.+-..|..=.+.|......+...|+.+|.-...+...|+.-+..|.++-.+...|......+-+.+-  ...+
T Consensus        78 ~ia~~L~~~~~~l~~f~~~qke~rK~~e~~~eK~qk~~~~~~k~l~ksKk~Ye~~Cke~~~a~q~~~k~~~~~t--~kel  155 (242)
T cd07671          78 QLAGMLREELKSLEEFRERQKEQRKKYEAVMERVQKSKVSLYKKTMESKKTYEQRCREADEAEQTFERSSSTGN--PKQS  155 (242)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC--HHHH
Confidence            46666666666677777888889999999999999999999999999988888777776666432211221111  1111


Q ss_pred             HHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhh----hHHHHHHHHH
Q 004661          568 LRLRSNELKLERQLENSQSEISSYKKKISSLEKERQ----DFQSTIEALQ  613 (739)
Q Consensus       568 LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~----~lqs~i~ALQ  613 (739)
                      -++   .-|+++.-..+..-...|+..|..|.+-|.    ++..+.+.+|
T Consensus       156 eK~---~~K~~k~~~~~~~a~~~Y~~~v~~l~~~~~~w~~~~~~~~~~~Q  202 (242)
T cd07671         156 EKS---QNKAKQCRDAATEAERVYKQNIEQLDKARTEWETEHILTCEVFQ  202 (242)
T ss_pred             HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            222   223333333333334667777777766665    4556777777

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 1 (PSTPIP1), also known as CD2 Binding Protein 1 (CD2BP1), is mainly expressed in hematopoietic cells. It is a binding partner of the cell surface receptor CD2 and PTP-PEST, a tyrosine phosphatase which functions in cell motility and Rac1 regulation. It also plays a role in the activation of the Wiskott-Aldrich syndrome protein (WASP), which couples actin rearrangement and T cell activation. Mutations in the gene encoding PSTPIP1 cause the autoinflammatory disorder known as PAPA (pyogenic sterile arthritis, pyoderma gangrenosum, and acne) syndrome. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain. F-BAR

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=89.97  E-value=21  Score=41.42  Aligned_cols=42  Identities=24%  Similarity=0.377  Sum_probs=18.1

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 004661          499 SLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYA  540 (739)
Q Consensus       499 aLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~Erd  540 (739)
                      .|..+.-.-...+..|+..+.++..++......++.+..|+.
T Consensus       339 ~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~  380 (594)
T PF05667_consen  339 ELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELK  380 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333344444444444444444444444444444443

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=89.94  E-value=7.5  Score=45.74  Aligned_cols=17  Identities=12%  Similarity=0.247  Sum_probs=8.3

Q ss_pred             HHHHHHHhHHHHHHHHh
Q 004661          555 ILASEVIGLEEKALRLR  571 (739)
Q Consensus       555 ~LAAEVV~LEEk~LqLR  571 (739)
                      .++.|+..+++++..|+
T Consensus       636 ~~~~EL~~~~~~l~~l~  652 (717)
T PF10168_consen  636 EFKKELERMKDQLQDLK  652 (717)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            34455555555544443

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PRK10884 SH3 domain-containing protein; Provisional

Probab=89.91  E-value=3.5  Score=41.77  Aligned_cols=28  Identities=11%  Similarity=0.117  Sum_probs=13.4

Q ss_pred             HHHHHHhhhHHHhhhhHHHHHHHHHHHH
Q 004661          589 SSYKKKISSLEKERQDFQSTIEALQEEK  616 (739)
Q Consensus       589 ~s~~rqvsslekeR~~lqs~i~ALQEEK  616 (739)
                      ..+++++..+.+++..|...++++|+..
T Consensus       142 ~~L~~~l~~~~~~~~~l~~~~~~~~~~~  169 (206)
T PRK10884        142 QKLKNQLIVAQKKVDAANLQLDDKQRTI  169 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444445555555555443

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=89.88  E-value=32  Score=42.56  Aligned_cols=147  Identities=18%  Similarity=0.215  Sum_probs=93.7

Q ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHHHHHHHH
Q 004661          481 RSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEV  560 (739)
Q Consensus       481 R~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak~LAAEV  560 (739)
                      |.|--.+.-.+.|-..-.+....-++-.+++....++|+++..+|..--..|..++.|-.-+..+.+.+.+.--.|--++
T Consensus       230 rEl~E~~~~l~~le~~r~~~~e~s~~~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~  309 (1200)
T KOG0964|consen  230 RELNEINGELERLEEDRSSAPEESEQYIDALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKI  309 (1200)
T ss_pred             hHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence            44555555556666655555566666666677777777777777777777777777777777766666666554555555


Q ss_pred             HhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 004661          561 IGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKAS  627 (739)
Q Consensus       561 V~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQEEKKlLqskLRka~  627 (739)
                      -.|-+++-.=+-..-.+...++.+..+|..-+..++.++..+.+|+..=+.+..--..|+++.|-.-
T Consensus       310 kdlq~~i~~n~q~r~~~l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~  376 (1200)
T KOG0964|consen  310 KDLQDQITGNEQQRNLALHVLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLL  376 (1200)
T ss_pred             HHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            5555555444334444455667777777777778887777777777666665555555655555443

>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin

Probab=89.80  E-value=11  Score=40.09  Aligned_cols=69  Identities=25%  Similarity=0.383  Sum_probs=63.2

Q ss_pred             HHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHH
Q 004661          553 AKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQS  621 (739)
Q Consensus       553 ak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQEEKKlLqs  621 (739)
                      .+.+..+|-.++..|-.+.++|-.|+..++.-+.|.++.+|++.+|++=|=-.....+.|.+|-+.|+.
T Consensus       171 i~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY~  239 (267)
T PF10234_consen  171 IKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLYE  239 (267)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence            356778899999999999999999999999999999999999999999999999999999999877664

Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=89.75  E-value=29  Score=42.21  Aligned_cols=48  Identities=31%  Similarity=0.443  Sum_probs=39.0

Q ss_pred             hhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhC
Q 004661          581 LENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASG  628 (739)
Q Consensus       581 le~l~~E~~s~~rqvsslekeR~~lqs~i~ALQEEKKlLqskLRka~a  628 (739)
                      +...++.+-..+..|..+.|-|.-+.++|+.||-+-|.+|.+|.+.+-
T Consensus       460 l~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~  507 (1118)
T KOG1029|consen  460 LQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAP  507 (1118)
T ss_pred             hhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            344555666677788888899999999999999999999999988754

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=89.72  E-value=21  Score=34.79  Aligned_cols=110  Identities=25%  Similarity=0.353  Sum_probs=61.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHH
Q 004661          510 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEIS  589 (739)
Q Consensus       510 ~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~  589 (739)
                      ...-|++.++-|++++..-.-.++.+-.+-.+++.+|..-.+.-..|+.+-=.|+.-+-.+|+.--.+.++++..+..|+
T Consensus        18 e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~   97 (140)
T PF10473_consen   18 EKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVS   97 (140)
T ss_pred             hHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33445555566666655555556666666666666666666666667777767777777777666666555555544443


Q ss_pred             HH-------HHHhhhHHHh----hhhHHHHHHHHHHHHHHH
Q 004661          590 SY-------KKKISSLEKE----RQDFQSTIEALQEEKKMM  619 (739)
Q Consensus       590 s~-------~rqvssleke----R~~lqs~i~ALQEEKKlL  619 (739)
                      .+       ...+..++.+    .+.+...++.||.+++.|
T Consensus        98 eLE~~~~~~~~~l~~~E~ek~q~~e~~~~~ve~L~~ql~~L  138 (140)
T PF10473_consen   98 ELESLNSSLENLLQEKEQEKVQLKEESKSAVEMLQKQLKEL  138 (140)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            33       3333333333    223334455555555544

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=89.69  E-value=32  Score=39.39  Aligned_cols=69  Identities=26%  Similarity=0.227  Sum_probs=33.0

Q ss_pred             HHHHHHhHHHHHHHHhhhHHHhHHHhhhhh----------HHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHh
Q 004661          556 LASEVIGLEEKALRLRSNELKLERQLENSQ----------SEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRK  625 (739)
Q Consensus       556 LAAEVV~LEEk~LqLRS~eLKlErele~l~----------~E~~s~~rqvsslekeR~~lqs~i~ALQEEKKlLqskLRk  625 (739)
                      ++.|--.||.++.+++-.-.+.++++..+.          .-+..+.+++.... ..+.-+...+.|.+-.+.|...+.+
T Consensus       260 ~~~~r~~Le~ei~~le~e~~e~~~~l~~l~~~~~p~~l~~~ll~~~~~q~~~e~-~~~~~~~~~~~l~~~~~~i~~~~~~  338 (650)
T TIGR03185       260 LFEEREQLERQLKEIEAARKANRAQLRELAADPLPLLLIPNLLDSTKAQLQKEE-QSQQNQLTQEELEERDKELLESLPK  338 (650)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            344444455555555444444444443322          33455566655322 3334445555555555555555543

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>PF13166 AAA_13: AAA domain

Probab=89.67  E-value=41  Score=38.13  Aligned_cols=10  Identities=10%  Similarity=0.192  Sum_probs=4.5

Q ss_pred             hhHHHHHHHH
Q 004661          707 HNINALISEL  716 (739)
Q Consensus       707 ~nIn~lisel  716 (739)
                      ..|-.+|.++
T Consensus       546 ~~v~~~l~~~  555 (712)
T PF13166_consen  546 FGVASRLKEE  555 (712)
T ss_pred             HHHHHHHHHH
Confidence            3444444444

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=89.55  E-value=8.2  Score=43.55  Aligned_cols=16  Identities=19%  Similarity=0.223  Sum_probs=6.9

Q ss_pred             HHHHHhhhHHHHHHHH
Q 004661          491 ESLAAENSSLTDSYNQ  506 (739)
Q Consensus       491 EsLA~ENsaLTd~yNq  506 (739)
                      |-|++-|.+|.+.|-+
T Consensus        13 qr~~~~~~~laq~~k~   28 (459)
T KOG0288|consen   13 QRLIDLNTELAQCEKA   28 (459)
T ss_pred             hHHHHHHHHHHHHHHH
Confidence            3344444444444433

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=89.19  E-value=29  Score=35.71  Aligned_cols=24  Identities=33%  Similarity=0.508  Sum_probs=13.9

Q ss_pred             HHhhhHHHHHHHHHHhHHHHHHHH
Q 004661          704 RMIHNINALISELALEKEELVQAL  727 (739)
Q Consensus       704 r~I~nIn~lisela~Ekeel~~aL  727 (739)
                      ..|+-+-+++.||-.|+-.|-.-|
T Consensus       165 ~~ieEy~~~teeLR~e~s~LEeql  188 (193)
T PF14662_consen  165 KTIEEYRSITEELRLEKSRLEEQL  188 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            355666666666666665555444

>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=88.99  E-value=3  Score=37.29  Aligned_cols=69  Identities=23%  Similarity=0.311  Sum_probs=49.4

Q ss_pred             HHH-hHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 004661          559 EVI-GLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKAS  627 (739)
Q Consensus       559 EVV-~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQEEKKlLqskLRka~  627 (739)
                      ||+ .||+|+.+.------|+-|+++|+.+--++...++.+..-|..|+...+.|++|-.--|.|||-.-
T Consensus         4 Ev~ekLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLL   73 (79)
T COG3074           4 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRALL   73 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444 377777765433333555666777666677777777777788888888888899999999998653

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=88.86  E-value=24  Score=34.37  Aligned_cols=44  Identities=16%  Similarity=0.230  Sum_probs=20.5

Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhc
Q 004661          503 SYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLEC  546 (739)
Q Consensus       503 ~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~  546 (739)
                      +|......+.+.+++-.-|+.-|..=...|+.+..+...+..++
T Consensus         4 K~l~v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~da   47 (140)
T PF10473_consen    4 KFLHVEEKLKESESEKDSLEDHVESLERELEMSQENKECLILDA   47 (140)
T ss_pred             HHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            34444444555555555555554444444444444444444433

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>PLN03188 kinesin-12 family protein; Provisional

Probab=88.63  E-value=9.4  Score=47.75  Aligned_cols=68  Identities=22%  Similarity=0.279  Sum_probs=36.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHH-HH
Q 004661          476 KFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADER-AK  554 (739)
Q Consensus       476 KfaLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ER-ak  554 (739)
                      |.|||||++.--++.|+-|+    |-++||+....-....+=+.              -+  -++||+....-|--| ++
T Consensus      1099 ~~a~q~am~ghar~~e~ya~----l~ek~~~ll~~hr~i~egi~--------------dv--kkaaakag~kg~~~~f~~ 1158 (1320)
T PLN03188       1099 KEAMQMAMEGHARMLEQYAD----LEEKHIQLLARHRRIQEGID--------------DV--KKAAARAGVRGAESKFIN 1158 (1320)
T ss_pred             HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH--------------HH--HHHHHHhccccchHHHHH
Confidence            34677777777777776664    55666654433222222222              11  134455444433333 78


Q ss_pred             HHHHHHHhH
Q 004661          555 ILASEVIGL  563 (739)
Q Consensus       555 ~LAAEVV~L  563 (739)
                      +||||+--|
T Consensus      1159 alaae~s~l 1167 (1320)
T PLN03188       1159 ALAAEISAL 1167 (1320)
T ss_pred             HHHHHHHHH
Confidence            999998543

>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins

Probab=88.49  E-value=26  Score=34.19  Aligned_cols=35  Identities=29%  Similarity=0.287  Sum_probs=19.6

Q ss_pred             HHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHh
Q 004661          558 SEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKI  595 (739)
Q Consensus       558 AEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqv  595 (739)
                      .|.-.+|.|+..+   .-|+..++.+++.+|++.+-.+
T Consensus       120 ~e~~~~~~ki~e~---~~ki~~ei~~lr~~iE~~K~~~  154 (177)
T PF07798_consen  120 EEQAKQELKIQEL---NNKIDTEIANLRTEIESLKWDT  154 (177)
T ss_pred             HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555555544   3456666666666666655443

>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []

Probab=88.48  E-value=34  Score=35.55  Aligned_cols=131  Identities=18%  Similarity=0.266  Sum_probs=75.0

Q ss_pred             HHHHHHHHhhhHHHHHHHHhHH--HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHHHHHHHHHhHHH
Q 004661          488 ALSESLAAENSSLTDSYNQQRS--VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEE  565 (739)
Q Consensus       488 ~l~EsLA~ENsaLTd~yNqQ~~--~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak~LAAEVV~LEE  565 (739)
                      ..+++|-..-..+++.+|.-+|  .|.+||..++.++..+++-+..+...+.+|+.|...-.       ..=-||-.|=.
T Consensus         9 ~~~d~lq~~i~~as~~lNd~TGYs~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs-------~sQrEvn~LLq   81 (207)
T PF05546_consen    9 FYMDSLQETIFTASQALNDVTGYSEIEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQRS-------SSQREVNELLQ   81 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHh
Confidence            4556666667778889999886  67777777777777777666666666666666654433       22335554432


Q ss_pred             -----------HHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhC
Q 004661          566 -----------KALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASG  628 (739)
Q Consensus       566 -----------k~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQEEKKlLqskLRka~a  628 (739)
                                 |--.|-.++=-++++.+.++.+...++.++..+..+  =++.++..--|| ..--.|+|+++-
T Consensus        82 RK~sWs~~DleRFT~Lyr~dH~~e~~e~~ak~~l~~aE~~~e~~~~~--L~~~Il~RYHEE-QiWSDKIRr~ST  152 (207)
T PF05546_consen   82 RKHSWSPADLERFTELYRNDHENEQAEEEAKEALEEAEEKVEEAFDD--LMRAILTRYHEE-QIWSDKIRRAST  152 (207)
T ss_pred             cccCCChHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH-HHHHHHHHhHHH
Confidence                       344454444456666666665555555555422211  122333333333 455567777653

The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=88.43  E-value=14  Score=42.14  Aligned_cols=30  Identities=23%  Similarity=0.297  Sum_probs=15.3

Q ss_pred             HHHHHHhHHHHHHHHhhhHHHhHHHhhhhh
Q 004661          556 LASEVIGLEEKALRLRSNELKLERQLENSQ  585 (739)
Q Consensus       556 LAAEVV~LEEk~LqLRS~eLKlErele~l~  585 (739)
                      +-+++..+|.|+.+|---.-|.++|+..++
T Consensus       373 ~e~~kk~~e~k~~q~q~k~~k~~kel~~~~  402 (493)
T KOG0804|consen  373 LEAEKKIVERKLQQLQTKLKKCQKELKEER  402 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334455566666666444444444444444

>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7

Probab=88.41  E-value=35  Score=35.70  Aligned_cols=156  Identities=19%  Similarity=0.282  Sum_probs=90.2

Q ss_pred             cccccc-CCchhhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH------Hh----hhHHHHHHHHhHHHHH--
Q 004661          450 QHGFYS-TKHNEDFAALEQHIEDLTQEKFA----LQRSLEASRALSESLA------AE----NSSLTDSYNQQRSVVN--  512 (739)
Q Consensus       450 ~hdF~S-~~~~~~faaLqQhIeDLT~EKfa----LqR~L~~q~~l~EsLA------~E----NsaLTd~yNqQ~~~v~--  512 (739)
                      |.-|-. +..+++|..+.++|+.|.+-==.    .+|-..+..++.+.++      ..    ...|.+-++.-++.+.  
T Consensus        43 ~s~~~~v~~~~~eF~Emkey~d~L~~~L~~ieki~~Rl~kr~~ey~~~~~~fgk~~~lws~~E~~L~~~L~~~a~~~d~~  122 (243)
T cd07666          43 ASSVRGVKNRPEEFTEMNEYVEAFSQKINVLDKISQRIYKEQREYFEELKEYGPIYTLWSASEEELADSLKGMASCIDRC  122 (243)
T ss_pred             HHhccccCCCCHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHH
Confidence            444432 77899999999999988653222    3444444545544432      22    4448888999888888  


Q ss_pred             --HHHHHHHHHHHHH-------HHHHHHhhhhHHHHHHHHhhchhHHH--------HHHHHHHHHHhHHHHHHHHhhhHH
Q 004661          513 --QLKSEMEKLQEEI-------KVQLVELESFRNEYANVRLECNAADE--------RAKILASEVIGLEEKALRLRSNEL  575 (739)
Q Consensus       513 --qLk~dmEqLq~Ei-------~aQ~~~les~~~ErdaArle~~aA~E--------Rak~LAAEVV~LEEk~LqLRS~eL  575 (739)
                        .+.+.+..|...+       ..+..++.++-.+|+.+|++.....|        | ..+..||=.||+|+.+. +.. 
T Consensus       123 ~~~~~~~~~~l~~~f~~~Lkeyv~y~~slK~vlk~R~~~Q~~le~k~e~l~k~~~dr-~~~~~ev~~~e~kve~a-~~~-  199 (243)
T cd07666         123 CKATDKRMKGLSEQLLPVIHEYVLYSETLMGVIKRRDQIQAELDSKVEALANKKADR-DLLKEEIEKLEDKVECA-NNA-  199 (243)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHHHH-HHH-
Confidence              6666555555433       33334455556788877776654432        4 34555666666666666 222 


Q ss_pred             HhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHH
Q 004661          576 KLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSK  622 (739)
Q Consensus       576 KlErele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQEEKKlLqsk  622 (739)
                              ++.|+.|++++-.      .+|...+...=|.--.+|.+
T Consensus       200 --------~k~e~~Rf~~~k~------~D~k~~~~~yae~~i~~~~~  232 (243)
T cd07666         200 --------LKADWERWKQNMQ------TDLRSAFTDMAENNISYYEE  232 (243)
T ss_pred             --------HHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHH
Confidence                    3355555555432      45555555544444444443

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=88.39  E-value=28  Score=43.76  Aligned_cols=35  Identities=20%  Similarity=0.118  Sum_probs=22.0

Q ss_pred             CCCCCCCCcccCCccchhcccCCcceeccCCCCccccc
Q 004661          136 ETSGSAGPVNVSNSQETKDVNNDFVIYSSGQGRLRDGI  173 (739)
Q Consensus       136 d~s~~~g~v~~~~~q~~~~~nnd~~i~s~~q~~~~~~~  173 (739)
                      |-.|-.-.++|-.   -..++.|+.|.+...-+-|+-|
T Consensus       209 d~~GHikLADFGs---Clkm~~dG~V~s~~aVGTPDYI  243 (1317)
T KOG0612|consen  209 DKSGHIKLADFGS---CLKMDADGTVRSSVAVGTPDYI  243 (1317)
T ss_pred             cccCcEeeccchh---HHhcCCCCcEEeccccCCCCcc
Confidence            6666666666533   3467778888877655556544

>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold)

Probab=88.15  E-value=13  Score=35.22  Aligned_cols=87  Identities=20%  Similarity=0.276  Sum_probs=61.8

Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-HHHhhhh
Q 004661          457 KHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQ-LVELESF  535 (739)
Q Consensus       457 ~~~~~faaLqQhIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ-~~~les~  535 (739)
                      ..+...+.|+.+|++.....-.|...=+.=+....+|-++|.+++.+.|.....|.++...|+-   +-.+. .+...-.
T Consensus        13 el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~---eK~ak~~l~~r~~   89 (107)
T PF09304_consen   13 ELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLED---EKQAKLELESRLL   89 (107)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence            4566789999999999888777766666677788888899998888888888888888777764   11111 2222334


Q ss_pred             HHHHHHHHhhc
Q 004661          536 RNEYANVRLEC  546 (739)
Q Consensus       536 ~~ErdaArle~  546 (739)
                      ++|.|.|.++.
T Consensus        90 k~~~dka~lel  100 (107)
T PF09304_consen   90 KAQKDKAILEL  100 (107)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHhhhhHHHH
Confidence            66777766654

The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=88.12  E-value=2.8  Score=48.31  Aligned_cols=31  Identities=35%  Similarity=0.392  Sum_probs=24.3

Q ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHHhhhCCC
Q 004661          600 KERQDFQSTIEALQEEKKMMQSKLRKASGSG  630 (739)
Q Consensus       600 keR~~lqs~i~ALQEEKKlLqskLRka~a~~  630 (739)
                      +...--+.++++||.|-.-|..+|+....++
T Consensus       559 ~~~~~k~~~l~~L~~En~~L~~~l~~le~~~  589 (722)
T PF05557_consen  559 KAEQIKKSTLEALQAENEDLLARLRSLEEGN  589 (722)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence            3444567899999999999999998876543

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion

Probab=88.09  E-value=14  Score=36.88  Aligned_cols=56  Identities=25%  Similarity=0.324  Sum_probs=39.6

Q ss_pred             HHHHHHHHhhchhHHHHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHH
Q 004661          536 RNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKK  594 (739)
Q Consensus       536 ~~ErdaArle~~aA~ERak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rq  594 (739)
                      +.|..+...-+..--.|-..|=.|||.|=-.+..||+..   ||+|..++.|+-++-+.
T Consensus       126 ~~ee~~~~~y~~~eh~rll~LWr~v~~lRr~f~elr~~T---erdL~~~r~e~~r~~r~  181 (182)
T PF15035_consen  126 REEEENFNQYLSSEHSRLLSLWREVVALRRQFAELRTAT---ERDLSDMRAEFARTSRS  181 (182)
T ss_pred             HHHHHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHcc
Confidence            444444444444444555556699999999999998875   68999999998887553

>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]

Probab=88.00  E-value=12  Score=44.80  Aligned_cols=75  Identities=19%  Similarity=0.265  Sum_probs=54.3

Q ss_pred             HHHHhhchhHHHHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHH
Q 004661          540 ANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKK  617 (739)
Q Consensus       540 daArle~~aA~ERak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQEEKK  617 (739)
                      +-+-.+.-+|-|+.-+|-.|+-.+-.++.+++-.+=|+....|.|+.++.-+++   +....++.|...+..-+++..
T Consensus       205 qlhlkermaAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~~---~~~~~~~~mrd~~~~~~e~~~  279 (916)
T KOG0249|consen  205 QLHLKERMAALEDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLRR---SSLEKEQELRDHLRTYAERRR  279 (916)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH---HHHhhhhhhcchhhhhHHHHH
Confidence            445566677778888888888888888888888888888888888888877774   444556666666666666653

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=87.98  E-value=50  Score=41.07  Aligned_cols=169  Identities=22%  Similarity=0.345  Sum_probs=96.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHH-----------------------------------HHHHHHHHHHHHHhhhHHHHHH
Q 004661          460 EDFAALEQHIEDLTQEKFALQRS-----------------------------------LEASRALSESLAAENSSLTDSY  504 (739)
Q Consensus       460 ~~faaLqQhIeDLT~EKfaLqR~-----------------------------------L~~q~~l~EsLA~ENsaLTd~y  504 (739)
                      .+..-|+-.+.-|-.||-.+++.                                   |+.-..-.+.--.|-+++--+|
T Consensus       272 ~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~~l~~l~~~~~ki~e~~~EL~~I~Pky  351 (1200)
T KOG0964|consen  272 CEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQITGNEQQRNLALHVLQKVKDKIEEKKDELSKIEPKY  351 (1200)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence            46677777777777777666554                                   1111222333445666777788


Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHH---HHHHhhhh----------HHHHHHHHhhchhHHHHHHHHHHHHHhHHHHHHHHh
Q 004661          505 NQQRSVVNQLKSEMEKLQEEIKV---QLVELESF----------RNEYANVRLECNAADERAKILASEVIGLEEKALRLR  571 (739)
Q Consensus       505 NqQ~~~v~qLk~dmEqLq~Ei~a---Q~~~les~----------~~ErdaArle~~aA~ERak~LAAEVV~LEEk~LqLR  571 (739)
                      |.+...-+.++..+..|++....   -...-.+|          +.|+-..-...+.-.|+-..|+.|.-.||...-..=
T Consensus       352 ~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk~eRDkwir~ei~~l~~~i~~~ke~e~~lq~e~~~~e~~l~~~~  431 (1200)
T KOG0964|consen  352 NSLVDEEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSKEERDKWIRSEIEKLKRGINDTKEQENILQKEIEDLESELKEKL  431 (1200)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            88888888888888877774322   11122222          444445555666677777777777776664433332


Q ss_pred             hhHHHhHHHhhhhhHHHHHH-------HHHhhhHHHhh-------hhHHHHHHHHHHHHHHHHHHHHhhhC
Q 004661          572 SNELKLERQLENSQSEISSY-------KKKISSLEKER-------QDFQSTIEALQEEKKMMQSKLRKASG  628 (739)
Q Consensus       572 S~eLKlErele~l~~E~~s~-------~rqvsslekeR-------~~lqs~i~ALQEEKKlLqskLRka~a  628 (739)
                      ..--+++..+.+.+.+++.+       +++...+.-.|       .-|++.|+++.+.-..-+..||.+..
T Consensus       432 e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~dl~~~~~~L~~~~~  502 (1200)
T KOG0964|consen  432 EEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWREEKKLRSLIANLEEDLSRAEKNLRATMN  502 (1200)
T ss_pred             HHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            22223344444333333333       33333333333       34567777777777777778877765

>PF15066 CAGE1: Cancer-associated gene protein 1 family

Probab=87.96  E-value=58  Score=37.65  Aligned_cols=15  Identities=33%  Similarity=0.558  Sum_probs=10.8

Q ss_pred             HHHHHHHHHHHhhhC
Q 004661          614 EEKKMMQSKLRKASG  628 (739)
Q Consensus       614 EEKKlLqskLRka~a  628 (739)
                      +||.-|.+||-+..+
T Consensus       510 ~ERqkLKs~leKLva  524 (527)
T PF15066_consen  510 EERQKLKSRLEKLVA  524 (527)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            566778888877654

>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]

Probab=87.77  E-value=6.6  Score=40.68  Aligned_cols=62  Identities=31%  Similarity=0.476  Sum_probs=52.2

Q ss_pred             HHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 004661          563 LEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR  624 (739)
Q Consensus       563 LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQEEKKlLqskLR  624 (739)
                      |||+...+.-+--|++.+++....+.+..++++.++.|.-.+++...+.|-||--.||.++.
T Consensus       149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~  210 (216)
T KOG1962|consen  149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE  210 (216)
T ss_pred             hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence            78888888778888888888888888888888888888888899999999998888887765

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=87.75  E-value=37  Score=39.97  Aligned_cols=141  Identities=18%  Similarity=0.280  Sum_probs=84.8

Q ss_pred             HHHHHHHHhhhHHHHHHHHhHHHH-HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHHHHHHHHHhHHHH
Q 004661          488 ALSESLAAENSSLTDSYNQQRSVV-NQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEK  566 (739)
Q Consensus       488 ~l~EsLA~ENsaLTd~yNqQ~~~v-~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak~LAAEVV~LEEk  566 (739)
                      +--+-|-+--+-+-++|=...+.| .++++-+.+|+..++.|+-.+.-..+||.-.+-.+----+|-....---=.||.+
T Consensus       559 E~~~lL~~a~~vfrEqYi~~~dlV~~e~qrH~~~l~~~k~~QlQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~  638 (741)
T KOG4460|consen  559 ECLQLLSRATQVFREQYILKQDLVKEEIQRHVKLLCDQKKKQLQDLSYCREERKSLREMAERLADRYEEAKEKQEDLMNR  638 (741)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            334444455555666676655555 5788888899999999988888888877654432222222221111112357888


Q ss_pred             HHHHhhh-----------HHHhHHHhhhhhHHHHHHHHHhhhH----HHhhhhHHHHHHHHH--------HHHHHHHHHH
Q 004661          567 ALRLRSN-----------ELKLERQLENSQSEISSYKKKISSL----EKERQDFQSTIEALQ--------EEKKMMQSKL  623 (739)
Q Consensus       567 ~LqLRS~-----------eLKlErele~l~~E~~s~~rqvssl----ekeR~~lqs~i~ALQ--------EEKKlLqskL  623 (739)
                      |.+||+.           |+.-.+|++-+..+.+.+...++-+    .|.|+|+...+.|||        .+.|-+|+-|
T Consensus       639 ~~~L~~~~~~~lp~l~~AErdFk~Elq~~~~~~~~L~~~iET~~~~~~KQ~~H~~~v~~al~K~~Y~l~~~Q~~~iqsiL  718 (741)
T KOG4460|consen  639 MKKLLHSFHSELPVLSDAERDFKKELQLIPDQLRHLGNAIETVTMKKDKQQQHMEKVLSALPKPTYILSAYQRKCIQSIL  718 (741)
T ss_pred             HHHHHhcccccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccHHHHHHHHHHH
Confidence            8888763           3444445555554444444433332    368888888888888        3446777777


Q ss_pred             HhhhC
Q 004661          624 RKASG  628 (739)
Q Consensus       624 Rka~a  628 (739)
                      -+.+.
T Consensus       719 ~~L~~  723 (741)
T KOG4460|consen  719 KELGE  723 (741)
T ss_pred             HHHHH
Confidence            66554

>PF14915 CCDC144C: CCDC144C protein coiled-coil region

Probab=87.68  E-value=47  Score=36.29  Aligned_cols=149  Identities=21%  Similarity=0.366  Sum_probs=105.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004661          463 AALEQHIEDLTQEKFALQRSLEASRA-----------LSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVE  531 (739)
Q Consensus       463 aaLqQhIeDLT~EKfaLqR~L~~q~~-----------l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~  531 (739)
                      ||++.|=+-.|.+ --|.++++++++           -+-.|-+.|+-|+.....--+.++-|+-++-..+.-+.---++
T Consensus       102 aAi~d~dqsq~sk-rdlelafqr~rdEw~~lqdkmn~d~S~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~  180 (305)
T PF14915_consen  102 AAIQDHDQSQTSK-RDLELAFQRARDEWVRLQDKMNSDVSNLKDNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLA  180 (305)
T ss_pred             HHHhhHHHHHhhH-HHHHHHHHHHhhHHHHHHHHhcchHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444443 346666666666           3456778889999888888888999999999999999999999


Q ss_pred             hhhhHHHHHHHHhhchhH-----HHHHH--HHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhh
Q 004661          532 LESFRNEYANVRLECNAA-----DERAK--ILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQD  604 (739)
Q Consensus       532 les~~~ErdaArle~~aA-----~ERak--~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~~  604 (739)
                      ||.+..+..-++....+.     .|+++  ..-+--=.||||+-+|-|.-+=|+.+++.++.....-++-|--+.-   .
T Consensus       181 lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K~~~kek~ViniQ~---~  257 (305)
T PF14915_consen  181 LESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDDAHNKADNKEKTVINIQD---Q  257 (305)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH---H
Confidence            998877766665443332     33333  2334455799999999999999999999999888777766664432   3


Q ss_pred             HHHHHHHHHHH
Q 004661          605 FQSTIEALQEE  615 (739)
Q Consensus       605 lqs~i~ALQEE  615 (739)
                      ++.+|..||-|
T Consensus       258 f~d~~~~L~ae  268 (305)
T PF14915_consen  258 FQDIVKKLQAE  268 (305)
T ss_pred             HHHHHHHHHHH
Confidence            55666676643

>PRK10884 SH3 domain-containing protein; Provisional

Probab=87.50  E-value=5.9  Score=40.18  Aligned_cols=79  Identities=18%  Similarity=0.288  Sum_probs=49.4

Q ss_pred             cCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 004661          455 STKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELES  534 (739)
Q Consensus       455 S~~~~~~faaLqQhIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les  534 (739)
                      .+.-.+...+||+-|++|+.+--.+.          +++..+...+.+++++....+++|+.+-.+|+++++....+++.
T Consensus        88 ~p~~~~rlp~le~el~~l~~~l~~~~----------~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~  157 (206)
T PRK10884         88 TPSLRTRVPDLENQVKTLTDKLNNID----------NTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDA  157 (206)
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHHHH----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556778888888888874433222          33445555556666666666777777777777776666666665


Q ss_pred             hHHHHHHHH
Q 004661          535 FRNEYANVR  543 (739)
Q Consensus       535 ~~~ErdaAr  543 (739)
                      +.+|.|..+
T Consensus       158 l~~~~~~~~  166 (206)
T PRK10884        158 ANLQLDDKQ  166 (206)
T ss_pred             HHHHHHHHH
Confidence            555554443

>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein

Probab=87.44  E-value=34  Score=35.35  Aligned_cols=91  Identities=19%  Similarity=0.267  Sum_probs=54.2

Q ss_pred             chhhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 004661          458 HNEDFAALEQHIEDLTQ-------EKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLV  530 (739)
Q Consensus       458 ~~~~faaLqQhIeDLT~-------EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~  530 (739)
                      +.-+++-|.|-+.|.-.       |=++|--.|-..+.-.+..-.....|.+.++.....+...+.++.+...|+.-.+-
T Consensus         8 k~GEIsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLre   87 (202)
T PF06818_consen    8 KSGEISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLRE   87 (202)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhh
Confidence            45578888887777543       33455555555555566666666666677777666666666666666666555444


Q ss_pred             HhhhhHHHHHHHHhhchh
Q 004661          531 ELESFRNEYANVRLECNA  548 (739)
Q Consensus       531 ~les~~~ErdaArle~~a  548 (739)
                      .+..+..|....|.....
T Consensus        88 kl~~le~El~~Lr~~l~~  105 (202)
T PF06818_consen   88 KLGQLEAELAELREELAC  105 (202)
T ss_pred             hhhhhHHHHHHHHHHHHh
Confidence            555555444444444333

Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane

>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions []

Probab=87.24  E-value=7.6  Score=34.80  Aligned_cols=73  Identities=25%  Similarity=0.295  Sum_probs=61.3

Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004661          457 KHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELE  533 (739)
Q Consensus       457 ~~~~~faaLqQhIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le  533 (739)
                      .+-.++..||+.|--|+.||-.--.-.-.+++-.+.|-.||-.|....+.+...+.+|++    ++.++..++..++
T Consensus        21 ~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~~----~E~~~~~~l~~~E   93 (96)
T PF08647_consen   21 KKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLKE----TEKEFVRKLKNLE   93 (96)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHH----HHHHHHHHHHHhh
Confidence            455789999999999999998888888888888999999999999999999999999988    5666666555543

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex

Probab=87.20  E-value=77  Score=38.21  Aligned_cols=129  Identities=21%  Similarity=0.304  Sum_probs=74.8

Q ss_pred             HHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHHHHHHHHHhH----HHHH
Q 004661          492 SLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGL----EEKA  567 (739)
Q Consensus       492 sLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak~LAAEVV~L----EEk~  567 (739)
                      .|--||..|...++.-+..+..++.+|.--...-.-.+-.++.+..+-.+.|-+...+.|-.+.--.||-..    |+.+
T Consensus       496 kLslEkk~laQE~~~~~~elKk~qedi~~~k~qee~~~kqie~Lee~~~~Lrneles~~eel~~k~~Ev~~kl~ksEen~  575 (786)
T PF05483_consen  496 KLSLEKKQLAQETSDMALELKKQQEDINNSKKQEEKMLKQIENLEETNTQLRNELESVKEELKQKGEEVKCKLDKSEENA  575 (786)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhh
Confidence            345566666666666666666666666655444444444556665555566666666666655555555431    2222


Q ss_pred             HHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 004661          568 LRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKAS  627 (739)
Q Consensus       568 LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQEEKKlLqskLRka~  627 (739)
                      +-.-...++.++++--+.-.+--++++|.       .-...|+.||.|-|.|..++-.-.
T Consensus       576 r~~e~e~~~k~kq~k~lenk~~~LrKqvE-------nk~K~ieeLqqeNk~LKKk~~aE~  628 (786)
T PF05483_consen  576 RSIECEILKKEKQMKILENKCNNLRKQVE-------NKNKNIEELQQENKALKKKITAES  628 (786)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHHHH-------HHHhHHHHHHHHHHHHHHHHHHHH
Confidence            22333445555555555444555555555       344578889999988887765433

Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex

>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription

Probab=87.17  E-value=32  Score=33.86  Aligned_cols=44  Identities=25%  Similarity=0.285  Sum_probs=19.6

Q ss_pred             HHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhh
Q 004661          553 AKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKIS  596 (739)
Q Consensus       553 ak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvs  596 (739)
                      |+..+.+...+|+++-.|.-..-.++.+++.++..+..++.++.
T Consensus        86 Ar~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~  129 (221)
T PF04012_consen   86 AREALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLE  129 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444555555555544444444444444444444444443

The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].

>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family

Probab=87.13  E-value=38  Score=34.70  Aligned_cols=30  Identities=20%  Similarity=0.309  Sum_probs=14.8

Q ss_pred             HHHHHHHHHHHHHHHHHHH----hhhCCCCcccc
Q 004661          606 QSTIEALQEEKKMMQSKLR----KASGSGKSIDF  635 (739)
Q Consensus       606 qs~i~ALQEEKKlLqskLR----ka~a~~k~~~~  635 (739)
                      +..+..++...+..+.+|.    +|+..|....+
T Consensus       185 ~~~~~~~~~~l~~a~~~l~~~~i~AP~dG~V~~~  218 (327)
T TIGR02971       185 QAEVKSALEAVQQAEALLELTYVKAPIDGRVLKI  218 (327)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCEEECCCCeEEEEE
Confidence            3344444444444444444    45666766554

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.

>cd07679 F-BAR_PACSIN2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 2 (PACSIN2)

Probab=87.03  E-value=45  Score=35.43  Aligned_cols=99  Identities=17%  Similarity=0.233  Sum_probs=68.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHH
Q 004661          512 NQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSY  591 (739)
Q Consensus       512 ~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~  591 (739)
                      ....+-+++.|.--..++-.++..+..|..|-.+...|..|.+...++.-.=-+++.+++.-.=|.+.+++...   +.|
T Consensus       115 k~~e~~f~KaQKpw~k~~kkv~~aKk~Y~~aCk~e~~A~~~~~~~~~d~~~~~~q~~K~~~k~~k~~~~~~k~~---~~Y  191 (258)
T cd07679         115 KEAEDGFRKAQKPWAKKLKEVEAAKKAYHTACKEEKLATSREANSKADPALNPEQLKKLQDKVEKCKQDVLKTK---EKY  191 (258)
T ss_pred             hHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcccCCcCCHHHHHHHHHHHHHHHHHHHHHH---HHH
Confidence            45667788888888889999999999999998888888888764433322223344444444444444444444   667


Q ss_pred             HHHhhhHHHhhh----hHHHHHHHHH
Q 004661          592 KKKISSLEKERQ----DFQSTIEALQ  613 (739)
Q Consensus       592 ~rqvsslekeR~----~lqs~i~ALQ  613 (739)
                      +..|..|.+-|.    +|.++.+.+|
T Consensus       192 ~~~l~~L~~~~~~y~e~m~~~fe~~Q  217 (258)
T cd07679         192 EKSLKELDQTTPQYMENMEQVFEQCQ  217 (258)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            777777777664    6888999999

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 2 or Syndapin II is expressed ubiquitously and is involved in the regulation of tubulin polymerization. It associates with Golgi membranes and forms a complex with dynamin II which is crucial in promoting vesicle formation from the trans-Golgi network. PACSIN 2 contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave su

>cd07672 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 2

Probab=86.90  E-value=40  Score=34.71  Aligned_cols=114  Identities=17%  Similarity=0.226  Sum_probs=65.6

Q ss_pred             HHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHHHHHHHHHhHHHH
Q 004661          487 RALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEK  566 (739)
Q Consensus       487 ~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak~LAAEVV~LEEk  566 (739)
                      ..|+++|..+-..|..=.+.|......++..++.++.....|.-.++.-+..|..+-.+...|..+...  +.-..=.. 
T Consensus        78 ~~la~~L~~~~~~~~~f~~~qk~~rKk~e~~~ek~~K~~~~~~k~~~ksKk~Ye~~Cke~~~a~~~~~~--~~~~~~~k-  154 (240)
T cd07672          78 IQLAQTLRDEAKKMEDFRERQKLARKKIELIMDAIHKQRAMQFKKTMESKKNYEQKCRDKDEAEQAVNR--NANLVNVK-  154 (240)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ccCCCCHH-
Confidence            345666666555455555777777888899999999988888888888777777665554444433211  11000011 


Q ss_pred             HHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhH
Q 004661          567 ALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDF  605 (739)
Q Consensus       567 ~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~~l  605 (739)
                        +++-...|++|--+.+..--..|+..|..|++-|..-
T Consensus       155 --e~~K~~~Kl~K~~~~~~k~~~~Y~~~v~~l~~~~~~w  191 (240)
T cd07672         155 --QQEKLFAKLAQSKQNAEDADRLYMQNISVLDKIREDW  191 (240)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              1222333444444444444455666666666655543

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 2 (PSTPIP2), also known as Macrophage Actin-associated tYrosine Phosphorylated protein (MAYP), is mostly expressed in hematopoietic cells but is also expressed in the brain. It is involved in regulating cell adhesion and motility. Mutations in the gene encoding murine PSTPIP2 can cause autoinflammatory disorders such as chronic multifocal osteomyelitis and macrophage autoinflammatory disease. PSTPIP2 contains an N-terminal F-BAR domain and lacks the PEST motifs and SH3 domain that are found in PSTPIP1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They ca

>cd07649 F-BAR_GAS7 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Growth Arrest Specific protein 7

Probab=86.88  E-value=40  Score=34.65  Aligned_cols=58  Identities=14%  Similarity=0.240  Sum_probs=39.2

Q ss_pred             HHHHHHHHhhhH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhh
Q 004661          488 ALSESLAAENSS-LTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLE  545 (739)
Q Consensus       488 ~l~EsLA~ENsa-LTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle  545 (739)
                      .+++.|.+|+.. |..=...+...+..++..|+.++..++....++...+..|..+-.+
T Consensus        78 ~la~~L~~ev~~~l~~f~~~~~k~~k~~e~~~~k~~K~~~~~~~~~~kaKk~y~~~cke  136 (233)
T cd07649          78 KFSSKLQSEVEKPLLNFRENFKKDMKKLDHHIADLRKQLASRYAAVEKARKALLERQKD  136 (233)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455556666633 3333344566778888889999999888888888887776654333

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Growth Arrest Specific protein 7 (GAS7) is mainly expressed in the brain and is required for neurite outgrowth. It may also play a role in the protection and migration of embryonic stem cells. Treatment-related acute myeloid leukemia (AML) has been reported resulting from mixed-lineage leukemia (MLL)-GAS7 translocations as a complication of primary cancer treatment. GAS7 contains an N-terminal SH3 domain, followed by a WW domain, and a central F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []

Probab=86.86  E-value=36  Score=36.97  Aligned_cols=33  Identities=24%  Similarity=0.464  Sum_probs=21.7

Q ss_pred             hhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Q 004661          460 EDFAALEQHIEDLTQEKF-------ALQRSLEASRALSES  492 (739)
Q Consensus       460 ~~faaLqQhIeDLT~EKf-------aLqR~L~~q~~l~Es  492 (739)
                      ..+.-||+.+|-|..||-       +|.-+|++++.-++.
T Consensus        18 qKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~   57 (307)
T PF10481_consen   18 QKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEE   57 (307)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            346677788888888773       455667776655543

Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=86.60  E-value=67  Score=40.11  Aligned_cols=16  Identities=38%  Similarity=0.459  Sum_probs=6.7

Q ss_pred             HHHHhhhHHHHHHHHh
Q 004661          492 SLAAENSSLTDSYNQQ  507 (739)
Q Consensus       492 sLA~ENsaLTd~yNqQ  507 (739)
                      .|-.|++.++..|-+|
T Consensus       447 kl~~e~~t~~~s~~rq  462 (1195)
T KOG4643|consen  447 KLLEETSTVTRSLSRQ  462 (1195)
T ss_pred             HHHHHHHHHHHhHHHH
Confidence            3334444444444443

>cd07652 F-BAR_Rgd1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Saccharomyces cerevisiae Rho GTPase activating protein Rgd1 and similar proteins

Probab=86.56  E-value=26  Score=35.66  Aligned_cols=55  Identities=18%  Similarity=0.208  Sum_probs=39.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004661          477 FALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVE  531 (739)
Q Consensus       477 faLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~  531 (739)
                      ..|..+...-....|.+|..+..+....|+-...+..|..+|++.+..+..+...
T Consensus        61 gs~~~a~~~il~~~e~lA~~h~~~a~~L~~~~~eL~~l~~~~e~~RK~~ke~~~k  115 (234)
T cd07652          61 GSFSNAYHSSLEFHEKLADNGLRFAKALNEMSDELSSLAKTVEKSRKSIKETGKR  115 (234)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            4567777777777888888888888888776677777777777777666555443

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Saccharomyces cerevisiae Rgd1 is a GTPase activating protein (GAP) with activity towards Rho3p and Rho4p, which are involved in bud growth and cytokinesis, respectively. At low pH, S. cerevisiae Rgd1 is required for cell survival and the activation of the protein kinase C pathway, which is important in cell integrity and the maintenance of cell shape. It contains an N-terminal F-BAR domain and a C-terminal Rho GAP domain. The F-BAR domain of S. cerevisiae Rgd1 binds to phosphoinositides and plays an important role in the localization of the protein to the bud tip/neck during the cell cycle. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that

>cd07658 F-BAR_NOSTRIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Nitric Oxide Synthase TRaffic INducer (NOSTRIN)

Probab=86.24  E-value=42  Score=34.26  Aligned_cols=131  Identities=13%  Similarity=0.123  Sum_probs=64.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHH------------hHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHh
Q 004661          477 FALQRSLEASRALSESLAAENSSLTDSYNQ------------QRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRL  544 (739)
Q Consensus       477 faLqR~L~~q~~l~EsLA~ENsaLTd~yNq------------Q~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArl  544 (739)
                      ..|..++..-..-+|.+|.-+..|...-..            |...-..++..+++++.-+......+...+..|..+-.
T Consensus        58 Gtl~~aw~~~~~e~e~~a~~H~~la~~L~~ev~~~l~~~~~~~~k~rK~~~~~~~k~qk~~~~~~~~~~k~kk~y~~~~k  137 (239)
T cd07658          58 GTLSSAWTCVAEEMESEADIHRNLGSALTEEAIKPLRQVLDEQHKTRKPVENEVDKAAKLLTDWRSEQIKVKKKLHGLAR  137 (239)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345555555555556666666555554432            22233444555555555555555555556665555554


Q ss_pred             hchhHHHHHH--------------------HHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhh
Q 004661          545 ECNAADERAK--------------------ILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQD  604 (739)
Q Consensus       545 e~~aA~ERak--------------------~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~~  604 (739)
                      +.-.|..+..                    .-.-|+=-|+.|+.+.+....|.+.+....-..+..++..-.      .+
T Consensus       138 E~e~a~~~~~~~~~~~~~~~~~~~~~k~~~~~~k~~~Kl~~k~~ka~~~~~k~e~~y~~~~~~l~~~~~~~~------~~  211 (239)
T cd07658         138 ENEKLQDQVEDNKQSCTKQKMLNKLKKSAEVQDKEDEKLEAKRKKGEESRLKAENEYYTCCVRLERLRLEWE------SA  211 (239)
T ss_pred             HHHHHHHHHHHhhhhhhHHHHHhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HH
Confidence            5444443321                    112333445555555555555555444333333333222222      35


Q ss_pred             HHHHHHHHH
Q 004661          605 FQSTIEALQ  613 (739)
Q Consensus       605 lqs~i~ALQ  613 (739)
                      |..+++.+|
T Consensus       212 ~~~~~~~~Q  220 (239)
T cd07658         212 LRKGLNQYE  220 (239)
T ss_pred             HHHHHHHHH
Confidence            667777777

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Nitric Oxide Synthase TRaffic INducer (NOSTRIN) is expressed in endothelial and epithelial cells and is involved in the regulation, trafficking and targeting of endothelial NOS (eNOS). NOSTRIN facilitates the endocytosis of eNOS by coordinating the functions of dynamin and the Wiskott-Aldrich syndrome protein (WASP). Increased expression of NOSTRIN may be correlated to preeclampsia. NOSTRIN contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. The F-BAR domain of NOSTRIN is necessary and sufficient fo

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=86.20  E-value=16  Score=36.97  Aligned_cols=69  Identities=23%  Similarity=0.346  Sum_probs=52.6

Q ss_pred             HHHhhchhHHHHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHH
Q 004661          541 NVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTI  609 (739)
Q Consensus       541 aArle~~aA~ERak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i  609 (739)
                      .++...+.-++..+.|..|+=.|+.++-.|+...=++++.+..++.++.++++++..+++-|++|.-.+
T Consensus        39 ~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m  107 (251)
T PF11932_consen   39 QSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLM  107 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345555566666677777777777777777777778888888888888888888888888888876643

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>KOG0243 consensus Kinesin-like protein [Cytoskeleton]

Probab=86.15  E-value=46  Score=41.32  Aligned_cols=85  Identities=22%  Similarity=0.293  Sum_probs=48.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhc
Q 004661          467 QHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLEC  546 (739)
Q Consensus       467 QhIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~  546 (739)
                      -.|.|++.|=--|-|.|.++|+=.==.-.     -++|=+.-...++...++++|++||++-...+..+.+=|.+-...+
T Consensus       404 ~llKd~~~EIerLK~dl~AaReKnGvyis-----ee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~  478 (1041)
T KOG0243|consen  404 TLLKDLYEEIERLKRDLAAAREKNGVYIS-----EERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIK  478 (1041)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHhhCceEec-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            57899999999999999998873321111     1344444444555555555555555555555555555554444444


Q ss_pred             hhHHHHHHHH
Q 004661          547 NAADERAKIL  556 (739)
Q Consensus       547 ~aA~ERak~L  556 (739)
                      ..-.++-..|
T Consensus       479 ~~l~~~~~~~  488 (1041)
T KOG0243|consen  479 ELLKEEKEKL  488 (1041)
T ss_pred             HHHHHHHHHH
Confidence            4444444333

>TIGR00634 recN DNA repair protein RecN

Probab=86.15  E-value=52  Score=37.20  Aligned_cols=36  Identities=19%  Similarity=0.252  Sum_probs=17.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004661          462 FAALEQHIEDLTQEKFALQRSLEASRALSESLAAEN  497 (739)
Q Consensus       462 faaLqQhIeDLT~EKfaLqR~L~~q~~l~EsLA~EN  497 (739)
                      +..+++-++++..++-.++|.++..+.-.+.|-.-|
T Consensus       170 ~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe~~~  205 (563)
T TIGR00634       170 WLKARQQLKDRQQKEQELAQRLDFLQFQLEELEEAD  205 (563)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCC
Confidence            333444445555555555555555555555544433

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=85.96  E-value=7.8  Score=45.34  Aligned_cols=28  Identities=29%  Similarity=0.372  Sum_probs=15.0

Q ss_pred             CCCcCCcccc--ccccccccccchhhHHHh
Q 004661          679 GSTLLPESGR--LALEGLAVNIPHDQMRMI  706 (739)
Q Consensus       679 ~~~~~pe~g~--~~~~~~~~siP~Dqmr~I  706 (739)
                      ..|++|+++-  +.++.+.+.=+...-+.|
T Consensus       590 ~iPv~~~~dV~i~~ld~~~vv~~eelr~~~  619 (652)
T COG2433         590 EIPVLPEGDVQIIRLDEFAVVDSEELRRAI  619 (652)
T ss_pred             CCceeecCceEEEEecceEeecHHHHHHHH
Confidence            3477886643  556666554444443333

>PRK05689 fliJ flagellar biosynthesis chaperone; Validated

Probab=85.84  E-value=28  Score=32.28  Aligned_cols=50  Identities=14%  Similarity=0.173  Sum_probs=29.1

Q ss_pred             HHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHH
Q 004661          568 LRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKK  617 (739)
Q Consensus       568 LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQEEKK  617 (739)
                      .+|...--..+..+..+..++..++..+-...++|..|..+++.-.++-+
T Consensus        74 ~~L~~~I~~q~~~v~~~~~~ve~~r~~~~~a~~~~k~lEkL~ek~~~~~~  123 (147)
T PRK05689         74 QQLEKAITQQRQQLTQWTQKVDNARKYWQEKKQRLEALETLQERYQTEAR  123 (147)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333334445555555666666666666667777777777766654443

>TIGR02231 conserved hypothetical protein

Probab=85.71  E-value=5.4  Score=44.17  Aligned_cols=43  Identities=16%  Similarity=0.200  Sum_probs=22.7

Q ss_pred             HHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhC
Q 004661          586 SEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASG  628 (739)
Q Consensus       586 ~E~~s~~rqvsslekeR~~lqs~i~ALQEEKKlLqskLRka~a  628 (739)
                      .-..-|..++..+..++.++...+..|+++...|+.+|+++..
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~  173 (525)
T TIGR02231       131 QAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNALLT  173 (525)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            3334444444444455555555555555555556666555544

This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants

Probab=85.66  E-value=92  Score=37.65  Aligned_cols=167  Identities=19%  Similarity=0.261  Sum_probs=95.0

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH---Hhh-----hHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 004661          459 NEDFAALEQHIEDLTQEKFALQRSLE----ASRALSESLA---AEN-----SSLTDSYNQQRSVVNQLKSEMEKLQEEIK  526 (739)
Q Consensus       459 ~~~faaLqQhIeDLT~EKfaLqR~L~----~q~~l~EsLA---~EN-----saLTd~yNqQ~~~v~qLk~dmEqLq~Ei~  526 (739)
                      ..+.++|.+++|+.++.|.++..-+.    .-++-+++|-   +|.     ++++..-.+.-..-.+|..++..+..+++
T Consensus        23 e~e~~~lk~~l~~~~~~~~~~e~r~~hld~aLkec~~qlr~~ree~eq~i~~~~~~~s~e~e~~~~~le~~l~e~~~~l~  102 (769)
T PF05911_consen   23 EAEAASLKQQLEAATQQKLALEDRVSHLDGALKECMRQLRQVREEQEQKIHEAVAKKSKEWEKIKSELEAKLAELSKRLA  102 (769)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            45789999999999999998876432    1233444432   222     23333333333333344444544544444


Q ss_pred             HHHHHhhhhH---HHHHHHHhhchhHHHHH----HHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHH
Q 004661          527 VQLVELESFR---NEYANVRLECNAADERA----KILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLE  599 (739)
Q Consensus       527 aQ~~~les~~---~ErdaArle~~aA~ERa----k~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvssle  599 (739)
                      .-.++..++.   .||++...+.....-++    ..|-+-+=.+|-.+.-||-+.+=+.|||+=-..|++=.++.+..+.
T Consensus       103 ~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~keleir~~E~~~~~~~ae~a~  182 (769)
T PF05911_consen  103 ESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELEIRNEEREYSRRAAEAAS  182 (769)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            3333333332   23333333333322222    1233333445666677777777788888766666666666666665


Q ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHHh
Q 004661          600 KERQDFQSTIEALQEEKKMMQSKLRK  625 (739)
Q Consensus       600 keR~~lqs~i~ALQEEKKlLqskLRk  625 (739)
                      |.-.+=.--|-.|..|=++|+.-+||
T Consensus       183 kqhle~vkkiakLEaEC~rLr~l~rk  208 (769)
T PF05911_consen  183 KQHLESVKKIAKLEAECQRLRALVRK  208 (769)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            55444455578888999999998887

The function of this family is unknown.

>PRK10698 phage shock protein PspA; Provisional

Probab=85.59  E-value=45  Score=34.01  Aligned_cols=122  Identities=13%  Similarity=0.164  Sum_probs=62.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 004661          461 DFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYA  540 (739)
Q Consensus       461 ~faaLqQhIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~Erd  540 (739)
                      -..+|.|.|.||-..--.+.++++++.+.-..|..       +|.+....+..+...-+          ++|..=..+.+
T Consensus        25 P~k~l~q~i~em~~~l~~~r~alA~~~A~~k~~er-------~~~~~~~~~~~~e~kA~----------~Al~~G~EdLA   87 (222)
T PRK10698         25 PQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTR-------RIEQAEAQQVEWQEKAE----------LALRKEKEDLA   87 (222)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH----------HHHHCCCHHHH
Confidence            45799999999999888887777765544433332       22222222222221111          11111111111


Q ss_pred             H-HHhhchhHHHHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHH
Q 004661          541 N-VRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLE  599 (739)
Q Consensus       541 a-Arle~~aA~ERak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvssle  599 (739)
                      . |-.+-..+.+++..|-.++-..+..+-+|+....+|+..++.++.....+..+..+++
T Consensus        88 r~AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~  147 (222)
T PRK10698         88 RAALIEKQKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAAS  147 (222)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1 1122233445555666666666666666666666666666666665555555555433

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=85.59  E-value=57  Score=39.86  Aligned_cols=78  Identities=17%  Similarity=0.184  Sum_probs=35.6

Q ss_pred             HHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHHHHHHHHHhHHHHHHH
Q 004661          492 SLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALR  569 (739)
Q Consensus       492 sLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak~LAAEVV~LEEk~Lq  569 (739)
                      +|--|-++|-.+--+.-+.+--.+-++-.-..+|+.-.--.+-.++|++-.+++..+-.+--..|+-|--.|++|+.+
T Consensus       441 ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq  518 (1118)
T KOG1029|consen  441 QLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQ  518 (1118)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            344444444444433333333322222233333333333334445555555555555555555555555555555544

>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89

Probab=85.53  E-value=11  Score=32.59  Aligned_cols=52  Identities=23%  Similarity=0.226  Sum_probs=40.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 004661          478 ALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQL  529 (739)
Q Consensus       478 aLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~  529 (739)
                      .+.|-++........|..|++....+-=.-......|+.+++.|++|++.++
T Consensus        16 ~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r   67 (69)
T PF14197_consen   16 SLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEELR   67 (69)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4456677777888888889888888777777888888888888888866544

>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family

Probab=85.50  E-value=4.9  Score=45.57  Aligned_cols=77  Identities=23%  Similarity=0.349  Sum_probs=61.6

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhh-hHHHhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 004661          550 DERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKIS-SLEKERQDFQSTIEALQEEKKMMQSKLRKA  626 (739)
Q Consensus       550 ~ERak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvs-slekeR~~lqs~i~ALQEEKKlLqskLRka  626 (739)
                      .+=-|.|.++|-.|+.++.+|..+-=+|.+|-+.|+.+-...+.++. +++.+|++++...+.|++|...|+..|...
T Consensus        58 ~DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l  135 (472)
T TIGR03752        58 ADTLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQL  135 (472)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44568899999999999999999888888888888887777777775 456788888888888888876666555444

Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.

>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A)

Probab=85.43  E-value=43  Score=34.16  Aligned_cols=16  Identities=19%  Similarity=0.293  Sum_probs=6.7

Q ss_pred             hhHHHHHHHHHHHHHH
Q 004661          460 EDFAALEQHIEDLTQE  475 (739)
Q Consensus       460 ~~faaLqQhIeDLT~E  475 (739)
                      .++..++..++.+..+
T Consensus        80 ~~l~~a~a~l~~~~~~   95 (334)
T TIGR00998        80 LALAKAEANLAALVRQ   95 (334)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3344444444444333

>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein

Probab=85.39  E-value=58  Score=35.10  Aligned_cols=22  Identities=9%  Similarity=0.213  Sum_probs=13.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhC
Q 004661          607 STIEALQEEKKMMQSKLRKASG  628 (739)
Q Consensus       607 s~i~ALQEEKKlLqskLRka~a  628 (739)
                      ..+.+++-+.+.++.+|.++-.
T Consensus       227 ~~~~~~~~~l~~~~~~l~~~~~  248 (421)
T TIGR03794       227 KELETVEARIKEARYEIEELEN  248 (421)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            4455666666666666665554

Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.

>cd07676 F-BAR_FBP17 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17

Probab=85.35  E-value=50  Score=34.32  Aligned_cols=153  Identities=14%  Similarity=0.203  Sum_probs=90.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHH------------HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHh
Q 004661          477 FALQRSLEASRALSESLAAENSSLTDSYNQQRSV------------VNQLKSEMEKLQEEIKVQLVELESFRNEYANVRL  544 (739)
Q Consensus       477 faLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~------------v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArl  544 (739)
                      +.+.++-.-.-.=++.+|++++.+.+..+-+-..            -..+-.+.+.++.++......|+..+..|+.|-.
T Consensus        63 ~t~~~aw~~~l~e~~~~A~~H~~~~~~L~~~v~~~l~~~~~~~k~~rK~~~~~~~k~qk~~~~~~~~lekaKk~Y~~ack  142 (253)
T cd07676          63 YTSCRAFLMTLNEMNDYAGQHEVISENLASQIIVELTRYVQELKQERKSHFHDGRKAQQHIETCWKQLESSKRRFERDCK  142 (253)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444556677777776666543211            1112234567888899999999999999999999


Q ss_pred             hchhHHHHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhh-----hhHHHHHHHHH--HHHH
Q 004661          545 ECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKER-----QDFQSTIEALQ--EEKK  617 (739)
Q Consensus       545 e~~aA~ERak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR-----~~lqs~i~ALQ--EEKK  617 (739)
                      +.-.|..+-...=++...=..++.++|..--+-..+++..+   ..|..++..+-+.-     .+|-.+++.||  ||+|
T Consensus       143 e~E~A~~~~~ka~~d~~~sk~~~eK~k~~~~~~~~~~e~aK---n~Y~~~l~~~N~~q~~~Y~e~mp~vfd~lQ~lee~R  219 (253)
T cd07676         143 EADRAQQYFEKMDADINVTKADVEKARQQAQIRHQMAEDSK---AEYSSYLQKFNKEQHEHYYTHIPNIFQKIQEMEERR  219 (253)
T ss_pred             HHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence            88888776533322211112233344433333344444444   56666676665544     56888999999  5553


Q ss_pred             --HHHHHHHhhhCCCCc
Q 004661          618 --MMQSKLRKASGSGKS  632 (739)
Q Consensus       618 --lLqskLRka~a~~k~  632 (739)
                        .|..=|.+++..++.
T Consensus       220 i~~l~e~l~~~~~~e~~  236 (253)
T cd07676         220 IGRVGESMKTYAEVDRQ  236 (253)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence              455556666655443

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Formin Binding Protein 17 (FBP17), also called FormiN Binding Protein 1 (FNBP1), is involved in dynamin-mediated endocytosis. It is recruited to clathrin-coated pits late in the endocytosis process and may play a role in the invagination and scission steps. FBP17 binds in vivo to tankyrase, a protein involved in telomere maintenance and mitogen activated protein kinase (MAPK) signaling. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.

>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]

Probab=85.17  E-value=89  Score=39.19  Aligned_cols=32  Identities=19%  Similarity=0.348  Sum_probs=23.8

Q ss_pred             CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004661          456 TKHNEDFAALEQHIEDLTQEKFALQRSLEASR  487 (739)
Q Consensus       456 ~~~~~~faaLqQhIeDLT~EKfaLqR~L~~q~  487 (739)
                      .+-+++.++|.+-|..|++++-.-.|.+....
T Consensus       230 ~k~~~els~~~~ei~~~~~~~d~~e~ei~~~k  261 (1141)
T KOG0018|consen  230 EKANDELSRLNAEIPKLKERMDKKEREIRVRK  261 (1141)
T ss_pred             hhhhHHHHHHhhhhHHHHhhhhHHHHHHHHHH
Confidence            34567888888888888887777777766655

>PRK10929 putative mechanosensitive channel protein; Provisional

Probab=85.14  E-value=81  Score=39.51  Aligned_cols=38  Identities=13%  Similarity=0.164  Sum_probs=18.8

Q ss_pred             HHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHH
Q 004661          578 ERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEE  615 (739)
Q Consensus       578 Erele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQEE  615 (739)
                      |.++.+.....+=++.|..-+.++-+.++..+.+||+.
T Consensus       193 ~~~l~s~~~~~~L~~~q~dl~~~~~~~l~~~~~~Lq~~  230 (1109)
T PRK10929        193 ELAQLSANNRQELARLRSELAKKRSQQLDAYLQALRNQ  230 (1109)
T ss_pred             HHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444555555555566666644

>PRK03598 putative efflux pump membrane fusion protein; Provisional

Probab=85.02  E-value=34  Score=35.36  Aligned_cols=11  Identities=18%  Similarity=0.187  Sum_probs=6.5

Q ss_pred             hhhCCCCcccc
Q 004661          625 KASGSGKSIDF  635 (739)
Q Consensus       625 ka~a~~k~~~~  635 (739)
                      +|+..|....+
T Consensus       207 ~AP~dG~V~~~  217 (331)
T PRK03598        207 IAPSDGTILTR  217 (331)
T ss_pred             ECCCCeEEEec
Confidence            45666765544

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=84.89  E-value=34  Score=32.07  Aligned_cols=60  Identities=20%  Similarity=0.278  Sum_probs=30.6

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 004661          458 HNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEE  524 (739)
Q Consensus       458 ~~~~faaLqQhIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~E  524 (739)
                      ..++..++=..|-+|-       ...++-.+.-|+|.+.+-.+....=.+...+..|+.+++.++++
T Consensus        29 ~~~~~~~vin~i~~Ll-------~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere   88 (151)
T PF11559_consen   29 SEDNDVRVINCIYDLL-------QQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERE   88 (151)
T ss_pred             ccccHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555556665543       33444455555555555555444444444455555555555444

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>TIGR02977 phageshock_pspA phage shock protein A

Probab=84.61  E-value=47  Score=33.38  Aligned_cols=102  Identities=15%  Similarity=0.235  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHHH--------HHH----HHHhHHHHHHHHhhhHHHhHHH
Q 004661          513 QLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKI--------LAS----EVIGLEEKALRLRSNELKLERQ  580 (739)
Q Consensus       513 qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak~--------LAA----EVV~LEEk~LqLRS~eLKlEre  580 (739)
                      ++++++.+.++.+..+.+.-..+..+++.++..+..-.+||+.        ||-    +....++++-+|.-..-.++..
T Consensus        35 em~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~~k~~~~~~~~~l~~~~~~~~~~  114 (219)
T TIGR02977        35 EMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLARAALIEKQKAQELAEALERELAAVEET  114 (219)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555555555555555555555555555555554444432        232    3344444444444444444444


Q ss_pred             hhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhC
Q 004661          581 LENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASG  628 (739)
Q Consensus       581 le~l~~E~~s~~rqvsslekeR~~lqs~i~ALQEEKKlLqskLRka~a  628 (739)
                      ++.++..+..++              .-|+.++..+..|.-|.+.|-+
T Consensus       115 v~~l~~~l~~L~--------------~ki~~~k~k~~~l~ar~~~A~a  148 (219)
T TIGR02977       115 LAKLQEDIAKLQ--------------AKLAEARARQKALAIRHQAASS  148 (219)
T ss_pred             HHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHH
Confidence            444443333333              3444444444555555555444

Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.

>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]

Probab=84.33  E-value=97  Score=36.80  Aligned_cols=119  Identities=27%  Similarity=0.376  Sum_probs=77.2

Q ss_pred             HHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhh--------------HHHHHHHHhhchhHHHHHHHH
Q 004661          491 ESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESF--------------RNEYANVRLECNAADERAKIL  556 (739)
Q Consensus       491 EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~--------------~~ErdaArle~~aA~ERak~L  556 (739)
                      |+|-.|-.+=-.-||++   |-.|+-++.|+++++.--..+++.+              ..+|-+.|-+.-+--.|-.+|
T Consensus        92 esLLqESaakE~~yl~k---I~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~Rl  168 (772)
T KOG0999|consen   92 ESLLQESAAKEEYYLQK---ILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARL  168 (772)
T ss_pred             HHHHHHHHHhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence            45556655656667765   4455566666666655555544443              556777777888888999999


Q ss_pred             HHHHHhHHH-------HHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHH-----Hhh------hhHHHHHHHHHHHH
Q 004661          557 ASEVIGLEE-------KALRLRSNELKLERQLENSQSEISSYKKKISSLE-----KER------QDFQSTIEALQEEK  616 (739)
Q Consensus       557 AAEVV~LEE-------k~LqLRS~eLKlErele~l~~E~~s~~rqvssle-----keR------~~lqs~i~ALQEEK  616 (739)
                      -.|.-.|||       +|-.||.+.+    |-|+++.||.|++..+.-+-     ..|      ..|...+++||-|+
T Consensus       169 lseYSELEEENIsLQKqVs~LR~sQV----EyEglkheikRleEe~elln~q~ee~~~Lk~IAekQlEEALeTlq~ER  242 (772)
T KOG0999|consen  169 LSEYSELEEENISLQKQVSNLRQSQV----EYEGLKHEIKRLEEETELLNSQLEEAIRLKEIAEKQLEEALETLQQER  242 (772)
T ss_pred             HHHHHHHHHhcchHHHHHHHHhhhhh----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            888887777       4556666655    77888888888876554321     111      12556677777665

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=84.23  E-value=37  Score=31.88  Aligned_cols=77  Identities=19%  Similarity=0.339  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhh
Q 004661          509 SVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQ  585 (739)
Q Consensus       509 ~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak~LAAEVV~LEEk~LqLRS~eLKlErele~l~  585 (739)
                      ..-..|...+.+++.++......++.+....+.+..++..+.++-+.|-.++-.++.+...++-+.-|+...++..+
T Consensus        52 ~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~  128 (151)
T PF11559_consen   52 EQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRK  128 (151)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444555555555555555555556666666666666666666666666666666666666665555555554443

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins

Probab=83.52  E-value=77  Score=38.15  Aligned_cols=51  Identities=22%  Similarity=0.330  Sum_probs=38.9

Q ss_pred             HHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhC
Q 004661          578 ERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASG  628 (739)
Q Consensus       578 Erele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQEEKKlLqskLRka~a  628 (739)
                      ..++..+...+..+.+.+.+++-.|...-..+-+.|-|...|+..|+++-.
T Consensus       161 q~~l~sL~~k~~~Le~~L~~le~~r~~e~~~La~~q~e~d~L~~qLsk~~~  211 (739)
T PF07111_consen  161 QEALASLTSKAEELEKSLESLETRRAGEAKELAEAQREADLLREQLSKTQE  211 (739)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            456666777777777777888888877778888888888888888877643

The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm

>PF14992 TMCO5: TMCO5 family

Probab=83.40  E-value=25  Score=37.78  Aligned_cols=56  Identities=18%  Similarity=0.264  Sum_probs=35.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHH
Q 004661          464 ALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQE  523 (739)
Q Consensus       464 aLqQhIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~  523 (739)
                      .|=|-|++--.....|.|.+.+...+++.--+||.-.   .|.|.+. .+|.-+-.+|+.
T Consensus        22 ~lL~ki~~~E~~iq~Le~Eit~~~~~~~~~e~e~~~~---~~~e~~l-~~le~e~~~LE~   77 (280)
T PF14992_consen   22 SLLQKIQEKEGAIQSLEREITKMDHIADRSEEEDIIS---EERETDL-QELELETAKLEK   77 (280)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccccCchhHHhhhh---hchHHHH-HHHHhhhHHHhh
Confidence            3445667666677778888888887777776666655   4566653 444444444443

>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal

Probab=83.34  E-value=8.8  Score=35.29  Aligned_cols=81  Identities=22%  Similarity=0.337  Sum_probs=53.0

Q ss_pred             chhhHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 004661          458 HNEDFAALEQHIEDLTQEKFA-----------LQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIK  526 (739)
Q Consensus       458 ~~~~faaLqQhIeDLT~EKfa-----------LqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~  526 (739)
                      ..-||++||.||..+|-=++.           +.+-+.=+|=..|=|-.-.+.|.+........+.++..+.++|++.++
T Consensus        25 ~~~Di~~Lq~~i~~vtf~~l~~e~~~~~~dp~~~klfrLaQl~ieYLl~~q~~L~~~~~~l~~~~~~~~~~~~~l~~~~~  104 (118)
T PF13815_consen   25 RELDIDTLQENIENVTFCDLENEDCQHFVDPNFLKLFRLAQLSIEYLLHCQEYLSSQLEQLEERLQELQQEIEKLKQKLK  104 (118)
T ss_pred             hccCHHHHHHHHHhcceeccChhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356899999999977643321           233444455556666666666666666666666777777777777777


Q ss_pred             HHHHHhhhhHHH
Q 004661          527 VQLVELESFRNE  538 (739)
Q Consensus       527 aQ~~~les~~~E  538 (739)
                      .+..++..++.|
T Consensus       105 ~~~~~~k~lk~E  116 (118)
T PF13815_consen  105 KQKEEIKKLKKE  116 (118)
T ss_pred             HHHHHHHHHHHh
Confidence            776666666655

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]

Probab=83.04  E-value=1.2e+02  Score=36.87  Aligned_cols=47  Identities=32%  Similarity=0.396  Sum_probs=31.3

Q ss_pred             hhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhh
Q 004661          496 ENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLE  545 (739)
Q Consensus       496 ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle  545 (739)
                      +|+.|.+.|-|   .|.+|.+++--+-.|+.+-+-+..+++.|.+++...
T Consensus       399 ~~ssl~~e~~Q---Rva~lEkKvqa~~kERDalr~e~kslk~ela~~l~~  445 (961)
T KOG4673|consen  399 EVSSLREEYHQ---RVATLEKKVQALTKERDALRREQKSLKKELAAALLK  445 (961)
T ss_pred             cccchHHHHHH---HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhh
Confidence            34555566654   466677777777777777777777777777776654

>TIGR02231 conserved hypothetical protein

Probab=82.99  E-value=11  Score=41.81  Aligned_cols=30  Identities=10%  Similarity=0.197  Sum_probs=16.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 004661          510 VVNQLKSEMEKLQEEIKVQLVELESFRNEY  539 (739)
Q Consensus       510 ~v~qLk~dmEqLq~Ei~aQ~~~les~~~Er  539 (739)
                      .+.+|++++++|+++++.....++.+.+.+
T Consensus        72 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~  101 (525)
T TIGR02231        72 RLAELRKQIRELEAELRDLEDRGDALKALA  101 (525)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555666666666665555554444444333

This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.

>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells

Probab=82.81  E-value=60  Score=33.19  Aligned_cols=26  Identities=12%  Similarity=0.210  Sum_probs=15.6

Q ss_pred             HHHHHhhhHHHhhhhHHHHHHHHHHH
Q 004661          590 SYKKKISSLEKERQDFQSTIEALQEE  615 (739)
Q Consensus       590 s~~rqvsslekeR~~lqs~i~ALQEE  615 (739)
                      .|..+...++.|-.+.+.+++..+.+
T Consensus       143 ~f~~~~~~Ae~El~~A~~LL~~v~~~  168 (264)
T PF06008_consen  143 DFTPQRQNAEDELKEAEDLLSRVQKW  168 (264)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            35556666666666666666655543

Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex

>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]

Probab=82.55  E-value=46  Score=39.31  Aligned_cols=85  Identities=16%  Similarity=0.177  Sum_probs=34.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhch---hHHHHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHH
Q 004661          511 VNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECN---AADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSE  587 (739)
Q Consensus       511 v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~---aA~ERak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E  587 (739)
                      +..+..++++-+..+..+...++....|++...-...   +..-..+.|..+.....+++..|+-...++++++..++.+
T Consensus       184 ~~~~~~~l~~v~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~  263 (670)
T KOG0239|consen  184 LGDLVTELEHVTNSISELESVLKSAQEERRVLADSLGNYADLRRNIKPLEGLESTIKKKIQALQQELEELKAELKELNDQ  263 (670)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333443344444444444444444444333221   2222233333344444444444444444444444444444


Q ss_pred             HHHHHHHh
Q 004661          588 ISSYKKKI  595 (739)
Q Consensus       588 ~~s~~rqv  595 (739)
                      +..+.+.+
T Consensus       264 ~~~~~~~~  271 (670)
T KOG0239|consen  264 VSLLTREV  271 (670)
T ss_pred             HHHHHHHH
Confidence            44443333

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=82.42  E-value=1.1e+02  Score=36.05  Aligned_cols=94  Identities=23%  Similarity=0.249  Sum_probs=61.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 004661          462 FAALEQHIEDLTQEKFALQRSLEASR---ALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNE  538 (739)
Q Consensus       462 faaLqQhIeDLT~EKfaLqR~L~~q~---~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~E  538 (739)
                      ..+-|.-|+-|-.+...|.--++.|.   +=++..-.|+.+|.+..|.-+.....|..++=.+..+++.+--+++..-.+
T Consensus       303 ie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~~~f~~le~~~~~  382 (581)
T KOG0995|consen  303 IEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWELKLEIEDFFKELEKKFID  382 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            33333444444455555555555543   335566778888888888888888888888888888888888888888777


Q ss_pred             HHHHHhhchhH-HHHHHH
Q 004661          539 YANVRLECNAA-DERAKI  555 (739)
Q Consensus       539 rdaArle~~aA-~ERak~  555 (739)
                      ++-++....-- -++++-
T Consensus       383 ~~~l~~~i~l~~~~~~~n  400 (581)
T KOG0995|consen  383 LNSLIRRIKLGIAENSKN  400 (581)
T ss_pred             HHHHHHHHHHHHHHHhcc
Confidence            77666554433 444433

>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]

Probab=81.97  E-value=1.3e+02  Score=36.37  Aligned_cols=124  Identities=19%  Similarity=0.227  Sum_probs=82.8

Q ss_pred             HHHHHHHHHHHH-HHHHHHHHHHHHhhhHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhc-
Q 004661          472 LTQEKFALQRSL-EASRALSESLAAENSSLTDSYNQQRSV---VNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLEC-  546 (739)
Q Consensus       472 LT~EKfaLqR~L-~~q~~l~EsLA~ENsaLTd~yNqQ~~~---v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~-  546 (739)
                      .-++++.++|+- -.++...+..-..|..+++-|=-|...   -..+++++|+.+++.++-+..-..+..|-..+-++. 
T Consensus        78 ~kr~el~~~k~~~i~~r~~~~~~dr~~~~~~~l~~~q~a~~~~e~~lq~q~e~~~n~~q~~~~k~~el~~e~~~k~ae~~  157 (716)
T KOG4593|consen   78 HKRAELELTKAQSILARNYEAEVDRKHKLLTRLRQLQEALKGQEEKLQEQLERNRNQCQANLKKELELLREKEDKLAELG  157 (716)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555543 345666777777888888765544433   344677778888777777666666655554444443 


Q ss_pred             ---hhHHHHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHh
Q 004661          547 ---NAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKI  595 (739)
Q Consensus       547 ---~aA~ERak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqv  595 (739)
                         ..++++.-.+--||-.+|.++.++-+..-+.++++...+..+....+++
T Consensus       158 ~lr~k~dss~s~~q~e~~~~~~~~~~~~s~l~~~eke~~~~~~ql~~~~q~~  209 (716)
T KOG4593|consen  158 TLRNKLDSSLSELQWEVMLQEMRAKRLHSELQNEEKELDRQHKQLQEENQKI  209 (716)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               4677777788888999999999998888888888877665554444443

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=81.88  E-value=7.2  Score=37.25  Aligned_cols=70  Identities=27%  Similarity=0.382  Sum_probs=41.6

Q ss_pred             HHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhCCC
Q 004661          551 ERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSG  630 (739)
Q Consensus       551 ERak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQEEKKlLqskLRka~a~~  630 (739)
                      |--..|-.|+-.|.+++..|+...=.++.++.       .+.+.+..     .+|+..|+.|++|.+.|..||..+-.+.
T Consensus        72 eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~-------~L~~~~t~-----~el~~~i~~l~~e~~~l~~kL~~l~~~~  139 (169)
T PF07106_consen   72 EELAELDAEIKELREELAELKKEVKSLEAELA-------SLSSEPTN-----EELREEIEELEEEIEELEEKLEKLRSGS  139 (169)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhcCCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            33445555566666666665555554444443       33333331     2467778888888888888888776644


Q ss_pred             Cc
Q 004661          631 KS  632 (739)
Q Consensus       631 k~  632 (739)
                      +.
T Consensus       140 ~~  141 (169)
T PF07106_consen  140 KP  141 (169)
T ss_pred             CC
Confidence            44

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>PF12795 MscS_porin: Mechanosensitive ion channel porin domain

Probab=81.86  E-value=54  Score=33.13  Aligned_cols=169  Identities=18%  Similarity=0.254  Sum_probs=106.5

Q ss_pred             cCCchhhHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHhhhHHHHH------------HHHhHHHHHHHHH
Q 004661          455 STKHNEDFAALEQHIEDLTQEKF------ALQRSLEASRALSESLAAENSSLTDS------------YNQQRSVVNQLKS  516 (739)
Q Consensus       455 S~~~~~~faaLqQhIeDLT~EKf------aLqR~L~~q~~l~EsLA~ENsaLTd~------------yNqQ~~~v~qLk~  516 (739)
                      ++.+..-...|++.++-|.+-+-      .|++.++.+=.....|-.+=..+...            ..+.-..+.+...
T Consensus        13 ~~~~~~~i~~l~~al~~L~~~~~~~~~~~~~~~~i~~aP~~~~~l~~~l~~l~~~~~~~~~~~~~~s~~eLeq~l~~~~~   92 (240)
T PF12795_consen   13 EPEQKALIQDLQQALSFLDEIKKQKKRAAEYQKQIDQAPKEIRELQKELEALKSQDAPSKEILANLSLEELEQRLSQEQA   92 (240)
T ss_pred             ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhccccccccCcccCCHHHHHHHHHHHHH
Confidence            34555666777777666655443      45556665555555555554444332            3344455666666


Q ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHHHHHHHHHhH---------HHHHHHHhhhHHHhHHHhhhhhHH
Q 004661          517 EMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGL---------EEKALRLRSNELKLERQLENSQSE  587 (739)
Q Consensus       517 dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak~LAAEVV~L---------EEk~LqLRS~eLKlErele~l~~E  587 (739)
                      +|..++..+...-..+-.+..=-.+|+....++..|-..+-...-.+         +.+...|..+.--++-++..+..|
T Consensus        93 ~L~~~q~~l~~~~~~l~~~~~~p~~aq~~l~~~~~~l~ei~~~L~~~~~~~~~~l~~a~~~~l~ae~~~l~~~~~~le~e  172 (240)
T PF12795_consen   93 QLQELQEQLQQENSQLIEIQTRPERAQQQLSEARQRLQEIRNQLQNLPPNGESPLSEAQRWLLQAELAALEAQIEMLEQE  172 (240)
T ss_pred             HHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666666666666666666666778888888888888888876665         666666666655556666666666


Q ss_pred             HHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 004661          588 ISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKL  623 (739)
Q Consensus       588 ~~s~~rqvsslekeR~~lqs~i~ALQEEKKlLqskL  623 (739)
                      ..+......-+.+.|.-+..-++.++.+-..||..|
T Consensus       173 l~s~~~rq~L~~~qrdl~~~~~~~l~~~l~~Lq~~l  208 (240)
T PF12795_consen  173 LLSNNNRQELLQLQRDLLKARIQRLQQQLQALQNLL  208 (240)
T ss_pred             HHCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666665555566666666667777777776666554

>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]

Probab=81.72  E-value=1.3e+02  Score=37.18  Aligned_cols=114  Identities=24%  Similarity=0.351  Sum_probs=67.0

Q ss_pred             HhhhHHHHHHHHhHHHHHHH----HHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhch---------------hHHHHHHH
Q 004661          495 AENSSLTDSYNQQRSVVNQL----KSEMEKLQEEIKVQLVELESFRNEYANVRLECN---------------AADERAKI  555 (739)
Q Consensus       495 ~ENsaLTd~yNqQ~~~v~qL----k~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~---------------aA~ERak~  555 (739)
                      .||+.|.++.-+.-..+.+.    ++++.|.|.++..+--.|.+++.-||+-..-.+               -|.|||++
T Consensus       980 ~e~sdLnekLr~rL~q~eaeR~~~reqlrQ~Q~Q~sqYnqvl~~LksS~~~K~~~l~El~qEl~d~GV~AD~gAeeRA~~ 1059 (1480)
T COG3096         980 SENSDLNEKLRQRLEQAEAERTRAREQLRQHQAQLSQYNQVLASLKSSYDTKKELLNELQQELQDIGVRADSGAEERARI 1059 (1480)
T ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCcCcchHHHHHH
Confidence            56666665544333322221    233334444444444555666666655432211               24455554


Q ss_pred             HHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHH
Q 004661          556 LASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEA  611 (739)
Q Consensus       556 LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i~A  611 (739)
                      ---|   |-+++-.-|+-.-.+||++--...|+..+.+++..+|+|-+.++..+-+
T Consensus      1060 RRDE---Lh~~Lst~RsRr~~~EkqlT~~E~E~~~L~~~~rK~ErDY~~~Re~VV~ 1112 (1480)
T COG3096        1060 RRDE---LHAQLSTNRSRRNQLEKQLTFCEAEMDNLTRKLRKLERDYFEMREQVVT 1112 (1480)
T ss_pred             HHHH---HHHHHhccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            4333   4445555556666678888888999999999999999998888876654

>PRK12704 phosphodiesterase; Provisional

Probab=81.67  E-value=1e+02  Score=35.24  Aligned_cols=18  Identities=11%  Similarity=0.362  Sum_probs=11.0

Q ss_pred             HHHHHHHHHHHHHHhhhC
Q 004661          611 ALQEEKKMMQSKLRKASG  628 (739)
Q Consensus       611 ALQEEKKlLqskLRka~a  628 (739)
                      |=++=++.|-..+++.+.
T Consensus       186 a~~~a~~i~~~a~qr~a~  203 (520)
T PRK12704        186 ADKKAKEILAQAIQRCAA  203 (520)
T ss_pred             HHHHHHHHHHHHHHhhcc
Confidence            334445667777777664

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=81.39  E-value=14  Score=32.39  Aligned_cols=51  Identities=25%  Similarity=0.270  Sum_probs=28.0

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 004661          484 EASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELES  534 (739)
Q Consensus       484 ~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les  534 (739)
                      +++-+....|-.||+.|-...++....-.+|+.+.++|+++..+...-+.+
T Consensus        14 ~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~   64 (72)
T PF06005_consen   14 QQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRS   64 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444555555555555555555556666666666666555554444443

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]

Probab=81.35  E-value=38  Score=40.88  Aligned_cols=86  Identities=22%  Similarity=0.320  Sum_probs=56.6

Q ss_pred             hhhhHHHHHHHHhhchhHHHHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHH
Q 004661          532 LESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEA  611 (739)
Q Consensus       532 les~~~ErdaArle~~aA~ERak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i~A  611 (739)
                      ++-+.+|..+|++.----.|-++.|..-|=+-+.-.++-|+..|   ...+.|-.|.+++++++..+.+++..|+.-++.
T Consensus       172 ~qe~naeL~rarqreemneeh~~rlsdtvdErlqlhlkermaAl---e~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~  248 (916)
T KOG0249|consen  172 LEELNAELQRARQREKMNEEHNKRLSDTVDERLQLHLKERMAAL---EDKNRLEQELESVKKQLEEMRHDKDKLRTDIED  248 (916)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhccccccccHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence            33445566666655555555566666555544444555555555   334556777889999999999999888888888


Q ss_pred             HHHHHHHHH
Q 004661          612 LQEEKKMMQ  620 (739)
Q Consensus       612 LQEEKKlLq  620 (739)
                      |.-|-+.|.
T Consensus       249 Lr~e~~qL~  257 (916)
T KOG0249|consen  249 LRGELDQLR  257 (916)
T ss_pred             HHHHHHHHH
Confidence            876665554

>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea

Probab=81.17  E-value=35  Score=30.57  Aligned_cols=34  Identities=12%  Similarity=0.144  Sum_probs=17.9

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004661          500 LTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELE  533 (739)
Q Consensus       500 LTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le  533 (739)
                      +...||+-...+..|...+.+|+.++.-...+++
T Consensus         4 ~~~~~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~   37 (105)
T cd00632           4 QLAQLQQLQQQLQAYIVQRQKVEAQLNENKKALE   37 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556666666665555555555554444333333

Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st

>cd07622 BAR_SNX4 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 4

Probab=81.15  E-value=65  Score=32.50  Aligned_cols=148  Identities=11%  Similarity=0.160  Sum_probs=93.8

Q ss_pred             CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 004661          456 TKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESF  535 (739)
Q Consensus       456 ~~~~~~faaLqQhIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~  535 (739)
                      +..+.+|..+...|+.|..-=-.+.|..+|-.+=...|+.+...+-..||..+..=..|.+-|++.=+-+......++.+
T Consensus        10 ~~~d~~F~~ikey~~~L~~~l~~iekv~~Rl~~r~~~l~~~~~e~g~~f~~ls~~E~~l~~~le~~g~~~d~~~~~~~~~   89 (201)
T cd07622          10 RNPDKRFEDLKNYSDELQTNLNNLLKVRARLAERLYGVYKIHANYGRVFSEWSAIEKEMGDGLQKAGHYMDSYAASIDNG   89 (201)
T ss_pred             CCCCHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            34567898888888888765445555555544444556677778888888777666666666555554444444444332


Q ss_pred             ----------HHHHHHHHhhchhHHHHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhH
Q 004661          536 ----------RNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDF  605 (739)
Q Consensus       536 ----------~~ErdaArle~~aA~ERak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~~l  605 (739)
                                --||...-.....+.-+-...-.+.-.+++.+-+.+..   ++.+++.++.+.+.+...+.         
T Consensus        90 ~~~~~~f~e~LkEy~~ya~slk~vlk~r~~~q~~~e~~~~~L~~k~~~---l~~~ve~a~~~~e~f~~~~~---------  157 (201)
T cd07622          90 LEDEELIADQLKEYLFFADSLRAVCKKHELLQYDLEKAEDALANKKQQ---GEEAVKEAKDELNEFVKKAL---------  157 (201)
T ss_pred             HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH---------
Confidence                      33555555555666666666677777777777777544   77777777776666665544         


Q ss_pred             HHHHHHHHHHH
Q 004661          606 QSTIEALQEEK  616 (739)
Q Consensus       606 qs~i~ALQEEK  616 (739)
                       ..++.-|++|
T Consensus       158 -~E~~rF~~~K  167 (201)
T cd07622         158 -EDVERFKKQK  167 (201)
T ss_pred             -HHHHHHHHHH
Confidence             3455555555

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX4 is involved in recycling traffic from the sorting endosome (post-Golgi endosome) back to the late Golgi. It is also implicated in the regulation of plasma membrane receptor trafficking and interacts with receptors for EGF, insulin, platelet-derived growth factor and leptin. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and

>TIGR01069 mutS2 MutS2 family protein

Probab=81.06  E-value=32  Score=40.93  Aligned_cols=23  Identities=35%  Similarity=0.414  Sum_probs=14.5

Q ss_pred             cccccccccceeeecCCCCCCCCC
Q 004661           52 HDQHHLEADRVRVTDLDGAGTSDG   75 (739)
Q Consensus        52 ~~~~~le~~~~~v~d~dga~~sdg   75 (739)
                      .+.+.|..+.-++.|.+|. +.||
T Consensus       121 ~~~~~l~~~i~~~id~~g~-i~d~  143 (771)
T TIGR01069       121 ITLPPLENDIIACIDDDGK-VKDG  143 (771)
T ss_pred             CCcHHHHHHHHHHhCCCCE-ECCC
Confidence            3455677777788887773 3344

Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.

>KOG3096 consensus Spliceosome-associated coiled-coil protein [Function unknown]

Probab=81.02  E-value=73  Score=33.51  Aligned_cols=109  Identities=20%  Similarity=0.218  Sum_probs=80.6

Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhhHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004661          457 KHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLA--AENSSLTDSYNQ--QRSVVNQLKSEMEKLQEEIKVQLVEL  532 (739)
Q Consensus       457 ~~~~~faaLqQhIeDLT~EKfaLqR~L~~q~~l~EsLA--~ENsaLTd~yNq--Q~~~v~qLk~dmEqLq~Ei~aQ~~~l  532 (739)
                      .+.-|.+|.++.|.              .+++.-|...  -+|=.|+++|-.  =..-...|..-++.+|.|++-+.-..
T Consensus        89 gkr~d~~aW~e~l~--------------ns~aqlEhq~~r~~NLeLM~k~g~eaw~~~ne~le~~l~~aqkelq~~kk~i  154 (225)
T KOG3096|consen   89 GKRNDDAAWQESLL--------------NSMAQLEHQLVRNENLELMSKHGEEAWKQYNEVLEVMLTHAQKELQKTKKLI  154 (225)
T ss_pred             CccchHHHHHHHHH--------------HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44556677766553              2333333222  345566666532  23444567788899999999999999


Q ss_pred             hhhHHHHHHHHhhchhHHHHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhh
Q 004661          533 ESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLE  582 (739)
Q Consensus       533 es~~~ErdaArle~~aA~ERak~LAAEVV~LEEk~LqLRS~eLKlErele  582 (739)
                      ..+..+|-.||+.   |-+|-+.|-.+.|.|=-+-.+.++.++-+|+++.
T Consensus       155 q~vn~~RK~~Q~~---ag~rL~~le~~wvqLv~knyeie~a~~~le~~i~  201 (225)
T KOG3096|consen  155 QDVNRQRKHAQLT---AGERLRELEQKWVQLVSKNYEIEVACVQLETQID  201 (225)
T ss_pred             HHHhHHHHHHHHH---HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            9999999999986   5689999999999999999999999998888875

>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function

Probab=80.87  E-value=49  Score=34.10  Aligned_cols=60  Identities=22%  Similarity=0.307  Sum_probs=38.3

Q ss_pred             HHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 004661          564 EEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKL  623 (739)
Q Consensus       564 EEk~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQEEKKlLqskL  623 (739)
                      |+|+.+|+-+-=..+.+-......-...+.++.+|+.+|..++.-++.||..-+.|+...
T Consensus       125 ~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~q~  184 (192)
T PF11180_consen  125 EARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQRQA  184 (192)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            344444444444444444444555556677777788888888888888888887777654

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=80.65  E-value=95  Score=38.14  Aligned_cols=132  Identities=18%  Similarity=0.212  Sum_probs=61.8

Q ss_pred             HHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhCCCCcccc------CCCc--ccccCc
Q 004661          574 ELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKSIDF------GKTA--ASTVNA  645 (739)
Q Consensus       574 eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQEEKKlLqskLRka~a~~k~~~~------~~~s--~~~~Da  645 (739)
                      ..-++.++..++.++...-..++++.+.-..|-.+-.++-+|+++...||-..-..=|...+      +|-+  .-.+|+
T Consensus       808 l~~~q~e~~~~keq~~t~~~~tsa~a~~le~m~~~~~~la~e~~~ieq~ls~l~~~~k~~~nli~~ltEk~~sl~~qads  887 (970)
T KOG0946|consen  808 LQELQSELTQLKEQIQTLLERTSAAADSLESMGSTEKNLANELKLIEQKLSNLQEKIKFGNNLIKELTEKISSLEAQADS  887 (970)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhccccchhhHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHHhhcc
Confidence            33444555555555555555555555555555555555666666655544333211111110      1101  234677


Q ss_pred             ccccccccccCCCCCCCCCCCcCCCCCCCCCCCCCCcCCccccccccccccccchhhHHHhhhHHHHHHHHHHhHHHHHH
Q 004661          646 STSTEDLAITDTTLDNSNQDTHDDASLPRIDASGSTLLPESGRLALEGLAVNIPHDQMRMIHNINALISELALEKEELVQ  725 (739)
Q Consensus       646 STsTedL~~~~~~~~sS~~e~~~s~s~~~~~~~~~~~~pe~g~~~~~~~~~siP~Dqmr~I~nIn~lisela~Ekeel~~  725 (739)
                      +|.+--|    .+.+++|-+---+...++..-                . .-.-+||=..|.-.-..+.-|.--+||+.+
T Consensus       888 e~l~ka~----~~~k~~nl~lki~s~kqeqee----------------~-~v~~~~~~~~i~alk~~l~dL~q~~eeie~  946 (970)
T KOG0946|consen  888 ETLSKAL----KTVKSENLSLKIVSNKQEQEE----------------L-LVLLADQKEKIQALKEALEDLNQPVEEIED  946 (970)
T ss_pred             hHHHHHH----HHhhcccchhcccchhhhHHH----------------H-HHHHhhHHHHHHHHHHHHHHhCCChhhHHh
Confidence            7777666    555554433221111221111                0 112356666666666666666555555544


Q ss_pred             H
Q 004661          726 A  726 (739)
Q Consensus       726 a  726 (739)
                      -
T Consensus       947 e  947 (970)
T KOG0946|consen  947 E  947 (970)
T ss_pred             h
Confidence            3

>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional

Probab=80.63  E-value=81  Score=36.91  Aligned_cols=12  Identities=33%  Similarity=0.182  Sum_probs=6.1

Q ss_pred             HHHhHHHHHHHH
Q 004661          559 EVIGLEEKALRL  570 (739)
Q Consensus       559 EVV~LEEk~LqL  570 (739)
                      +|+.|..++..|
T Consensus       340 ~v~~l~~~~~~L  351 (726)
T PRK09841        340 TYRALLEKRQTL  351 (726)
T ss_pred             hHHHHHHHHHHH
Confidence            455555554444

>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed

Probab=80.45  E-value=31  Score=40.99  Aligned_cols=22  Identities=23%  Similarity=0.297  Sum_probs=13.3

Q ss_pred             ccccccccceeeecCCCCCCCCC
Q 004661           53 DQHHLEADRVRVTDLDGAGTSDG   75 (739)
Q Consensus        53 ~~~~le~~~~~v~d~dga~~sdg   75 (739)
                      +.+.|....-++.|.+|. +.||
T Consensus       127 ~~~~l~~~i~~~id~~g~-i~d~  148 (782)
T PRK00409        127 TLPELEQEIHNCIDEEGE-VKDS  148 (782)
T ss_pred             CcHHHHHHHHHHhCCCCE-ECCC
Confidence            445566666677777663 4444

>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal

Probab=80.40  E-value=36  Score=30.84  Aligned_cols=50  Identities=10%  Similarity=0.154  Sum_probs=34.4

Q ss_pred             hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhh---HHHHHHHHhhch
Q 004661          498 SSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESF---RNEYANVRLECN  547 (739)
Q Consensus       498 saLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~---~~ErdaArle~~  547 (739)
                      +.+...|++....+..+...+.+|+.++.-...+++.|   ..++.-+++=..
T Consensus         6 q~~~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l~~d~~vyk~VG~   58 (110)
T TIGR02338         6 QNQLAQLQQLQQQLQAVATQKQQVEAQLKEAEKALEELERLPDDTPVYKSVGN   58 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhch
Confidence            44667888888888888888888887777666666555   345555555444

Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.

>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]

Probab=80.32  E-value=1.8e+02  Score=37.22  Aligned_cols=86  Identities=20%  Similarity=0.191  Sum_probs=53.1

Q ss_pred             cCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 004661          455 STKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELES  534 (739)
Q Consensus       455 S~~~~~~faaLqQhIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les  534 (739)
                      ..+...+++.+..+...+..|+...+-.++.+-+=.++|-.+-..|...-+.....+..++..+-.+..++..-+.+.+.
T Consensus       845 ~~k~~~~~~~~i~~l~~~~~e~k~~~~~~~~~l~~~~qle~~~~~l~e~~~~~~s~~~e~~~~~~~~~~~l~e~~s~~e~  924 (1294)
T KOG0962|consen  845 LQKEVIEQEREISRLINLRNELKEEKQKIERSLARLQQLEEDIEELSEEITRLDSKVKELLERIQPLKVELEEAQSEKEE  924 (1294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHhhhcchhhhHHHHHHHHHH
Confidence            34455566666666666766666666666666566666666666666666666666666666655555555555555555


Q ss_pred             hHHHHH
Q 004661          535 FRNEYA  540 (739)
Q Consensus       535 ~~~Erd  540 (739)
                      ++.++.
T Consensus       925 ~k~~~~  930 (1294)
T KOG0962|consen  925 LKNERN  930 (1294)
T ss_pred             HHHHhh
Confidence            555543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	739
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	4e-13
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	6e-12
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-11
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	3e-11
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-10
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-10
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-07
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-06
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-09
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-09
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-09
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	5e-07
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-04
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	3e-08
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	6e-08
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	8e-08
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	1e-07
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	9e-07
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	1e-06
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	2e-06
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	3e-06
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	4e-06
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	3e-04
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	2e-07
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	7e-05
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	9e-05
1m1j_C	409	Fibrinogen gamma chain; coiled coils, disulfide ri	7e-05
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	1e-04
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	2e-04

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 72.2 bits (177), Expect = 4e-13
 Identities = 25/171 (14%), Positives = 63/171 (36%)

Query: 456  TKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLK 515
             K   +    +  I+ +  +   ++          + L    S LT +  ++      L 
Sbjct: 972  QKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLT 1031

Query: 516  SEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNEL 575
                K +  I    V L+        +       +  +  L  ++  L+ +   L++   
Sbjct: 1032 KLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLA 1091

Query: 576  KLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA 626
            K E +L+ + + +     + ++  K+ ++ +S I  LQE+ +  ++   KA
Sbjct: 1092 KKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKA 1142

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 68.3 bits (167), Expect = 6e-12
 Identities = 33/195 (16%), Positives = 76/195 (38%), Gaps = 10/195 (5%)

Query: 437  IRRLGSNESSIENQHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAE 496
            I+++  +   +E+Q+     K  ++   LE+ + DLT      +   +    L     + 
Sbjct: 985  IKKMEDDILIMEDQN----NKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESM 1040

Query: 497  NSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKIL 556
             S L     ++     +L+    KL+ E      ++   + + A ++ +    +E  +  
Sbjct: 1041 ISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAA 1100

Query: 557  ASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEE- 615
             + +     +         +LE  + + Q ++ S K   +  EK+++D    +EAL+ E 
Sbjct: 1101 LARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTEL 1160

Query: 616  -----KKMMQSKLRK 625
                     Q +LR 
Sbjct: 1161 EDTLDTTATQQELRG 1175

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 66.8 bits (163), Expect = 2e-11
 Identities = 24/164 (14%), Positives = 64/164 (39%), Gaps = 7/164 (4%)

Query: 465  LEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEE 524
            ++Q + DL ++    + + +  +    +   +   + D         N+L  E + L+E 
Sbjct: 953  MQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEER 1012

Query: 525  IKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENS 584
            +      L     +  N+         + K   S +  LE +  +   +  +LE+     
Sbjct: 1013 VSDLTTNLAEEEEKAKNLT------KLKNK-HESMISELEVRLKKEEKSRQELEKIKRKL 1065

Query: 585  QSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASG 628
            + E S   ++I+ L+ +  + ++ +   +EE +   ++L   + 
Sbjct: 1066 EGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETS 1109

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 66.0 bits (161), Expect = 3e-11
 Identities = 28/170 (16%), Positives = 66/170 (38%), Gaps = 7/170 (4%)

Query: 463  AALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQ 522
              LE+ + ++       +   +  +A  + +  +   L +   ++ +   +L+ E     
Sbjct: 923  QELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTAD 982

Query: 523  EEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLE 582
             +IK    ++    ++   +  E    +ER   L + +   EEKA  L   + K E  + 
Sbjct: 983  GKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMIS 1042

Query: 583  NSQSEISSYKKKISSLEKERQDFQ-------STIEALQEEKKMMQSKLRK 625
              +  +   +K    LEK ++  +         I  LQ +   ++++L K
Sbjct: 1043 ELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAK 1092

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 64.5 bits (157), Expect = 1e-10
 Identities = 23/161 (14%), Positives = 62/161 (38%), Gaps = 3/161 (1%)

Query: 459  NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEM 518
             E    L +           L+  L+      + L      L    +     + +L++++
Sbjct: 1024 EEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQI 1083

Query: 519  EKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLE 578
             +L+ ++  +  EL++      +   + N A ++ + L S +  L+E     ++   K E
Sbjct: 1084 AELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAE 1143

Query: 579  RQLENSQSEISSYKKKISSLEKE---RQDFQSTIEALQEEK 616
            +Q  +   E+ + K ++         +Q+ + +     ++K
Sbjct: 1144 KQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKDDDDK 1184

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 64.1 bits (156), Expect = 1e-10
 Identities = 56/298 (18%), Positives = 110/298 (36%), Gaps = 27/298 (9%)

Query: 462  FAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVV---------- 511
               LEQ    L +EK  LQ  L+A   L          L     +   ++          
Sbjct: 880  LKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEE 939

Query: 512  ----NQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKA 567
                 QL++E +K+Q+++     +LE        ++LE   AD + K +  +++ +E++ 
Sbjct: 940  EERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQN 999

Query: 568  LRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEAL-----QEEKKMMQSK 622
             +L      LE ++ +  + ++  ++K  +L K +   +S I  L     +EEK   + +
Sbjct: 1000 NKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELE 1059

Query: 623  LRKASGSGKSIDFGKTAASTVNASTSTED-LAITDTTLDNSNQDTHDDASLPRIDASGST 681
              K    G+S D  +  A         +  LA  +  L  +     D+ S        + 
Sbjct: 1060 KIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQK------NN 1113

Query: 682  LLPESGRLALEGLAVNIPHDQMRMIHN-INALISELALEKEELVQALSSELAQSSKLK 738
             L +   L      +    +  +   N       +L+ E E L   L   L  ++  +
Sbjct: 1114 ALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQ 1171

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 54.1 bits (130), Expect = 1e-07
 Identities = 30/180 (16%), Positives = 69/180 (38%), Gaps = 21/180 (11%)

Query: 455  STKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQL 514
             T+  E+  A ++ ++   + +   +  L+        L  E + L     ++     +L
Sbjct: 852  VTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQ----EKLQAETEL 907

Query: 515  KSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNE 574
             +E E+++  +  +  ELE   +E             R +        L+ +  +++   
Sbjct: 908  YAEAEEMRVRLAAKKQELEEILHEME----------ARIEEEEERSQQLQAEKKKMQQQM 957

Query: 575  LKLERQLE-------NSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKAS 627
            L LE QLE         Q E  +   KI  +E +    +     L +E+K+++ ++   +
Sbjct: 958  LDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLT 1017

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 53.7 bits (129), Expect = 2e-07
 Identities = 28/154 (18%), Positives = 64/154 (41%), Gaps = 8/154 (5%)

Query: 472 LTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVE 531
           L      L +       +      E     +   +  + + +L+ +  +L EE  +   +
Sbjct: 842 LFFXIXPLLKVTRQEEEMQA-KDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEK 900

Query: 532 LESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSY 591
           L++    YA        A+E    LA++   LEE    + +   + E + +  Q+E    
Sbjct: 901 LQAETELYAE-------AEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKM 953

Query: 592 KKKISSLEKERQDFQSTIEALQEEKKMMQSKLRK 625
           ++++  LE++ ++ ++  + LQ EK     K++K
Sbjct: 954 QQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKK 987

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 69.5 bits (169), Expect = 3e-12
 Identities = 93/709 (13%), Positives = 194/709 (27%), Gaps = 265/709 (37%)

Query: 48  DFSLHDQHHLEADRVRV------TDLDGAGTSDGPDKAVVSLPLVMH-----NDDNKALK 96
           DF   +  +   D + V       + D     D P K+++S   + H     +  +  L+
Sbjct: 8   DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMP-KSILSKEEIDHIIMSKDAVSGTLR 66

Query: 97  L-----AQQSQQVSLSDKRINSNCFENDLNSSSAYLAQTYSNNQETSGSAGPVNVSNSQE 151
           L     ++Q + V    ++      E  L  +  +L                       E
Sbjct: 67  LFWTLLSKQEEMV----QKF----VEEVLRINYKFLMSPIKT-----------------E 101

Query: 152 TKDVNNDFVIYSSGQGRLRDGIMSNQFLSLLPEASQDYDSSNSSKSGFQGIEESQSKGND 211
            +  +    +Y   + RL +                                      N 
Sbjct: 102 QRQPSMMTRMYIEQRDRLYND-------------------------------------NQ 124

Query: 212 SFPKVPTLVNSGPSHDFVTKISPQNSVST-LFQSKPSNAIAL----GNG----------- 255
            F K             V+++ P   +   L + +P+  + +    G+G           
Sbjct: 125 VFAK-----------YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLS 173

Query: 256 HSFHSSSEGTAH-LTTSTGGSASEV-----GLNTPSTTNFSDPVSFNTGEGKPSNSASGL 309
           +      +     L      S   V      L      N++     ++      +S    
Sbjct: 174 YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE 233

Query: 310 AS--LQSTPFKRS-------------EYSGYNFD------------------AGNSFNHV 336
               L+S P++                     F+                  +  +  H+
Sbjct: 234 LRRLLKSKPYENCLLVLLNVQNAKAWNA----FNLSCKILLTTRFKQVTDFLSAATTTHI 289

Query: 337 PVSSATNKFTLGKSRASFLDSLNV-------------PRASS--GTL----------FEQ 371
            +   +   T  + ++  L  L+              PR  S               ++ 
Sbjct: 290 SLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKH 349

Query: 372 TEPERDSFMSSSSLNSMDVLGSSPAQNPSMEK---ETTGAFSKTTTSNIPSA------FD 422
              ++ + +  SSLN ++         P+  +   +    F  +   +IP+       FD
Sbjct: 350 VNCDKLTTIIESSLNVLE---------PAEYRKMFDRLSVFPPSA--HIPTILLSLIWFD 398

Query: 423 YLGNPTVSTSDRGDIRRLGSNESSIENQHGFYSTKHNEDFAALEQHIEDLTQEKFALQRS 482
                 V  SD   +       S +E        K  ++       I  +  E   L+  
Sbjct: 399 ------VIKSDVMVVVNKLHKYSLVE--------KQPKESTI---SIPSIYLE---LKVK 438

Query: 483 LEASRALSESLAAENSSLTDSYNQQRSVVNQLKSE--------------MEKLQEEIKVQ 528
           LE   AL       + S+ D YN  ++  +                   ++ ++   ++ 
Sbjct: 439 LENEYAL-------HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMT 491

Query: 529 LVELESFRNEYANVR-LECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSE 587
           L     FR  + + R LE        KI           A     + L   +QL+  +  
Sbjct: 492 L-----FRMVFLDFRFLE-------QKIRHDST------AWNASGSILNTLQQLKFYKPY 533

Query: 588 IS----SYKKKISSLEKERQDFQSTIEA---LQEEKKMMQSKLRKASGS 629
           I      Y++ ++++     DF   IE      +   +++  L     +
Sbjct: 534 ICDNDPKYERLVNAIL----DFLPKIEENLICSKYTDLLRIALMAEDEA 578

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 64.9 bits (157), Expect = 8e-11
 Identities = 58/424 (13%), Positives = 114/424 (26%), Gaps = 129/424 (30%)

Query: 401 MEKETTGAFSKTTTSNIPSAFDYLGNPTVSTSDRGDIRRL-----GSNESSIENQHGFYS 455
           ++       SK    +I      + +    +       RL        E  ++    F  
Sbjct: 38  VQDMPKSILSKEEIDHI------IMSKDAVSG----TLRLFWTLLSKQEEMVQK---FVE 84

Query: 456 TKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQR-SVVNQL 514
                ++  L   I+   ++   + R     R   + L  +N      YN  R     +L
Sbjct: 85  EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR---DRLYNDNQVFAK-YNVSRLQPYLKL 140

Query: 515 KSEMEKLQEEIKV----------QLVELESFRNE-----------YANVRLECNAADERA 553
           +  + +L+    V            V L+   +            + N++  CN+ +   
Sbjct: 141 RQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLK-NCNSPETVL 199

Query: 554 KILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQ---------- 603
           ++L      L     ++  N         N +  I S + ++  L K +           
Sbjct: 200 EMLQK----L---LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN 252

Query: 604 ----------DFQSTI----------EAL--QEEKKMMQSKLRKASGSGKSID-FGKTAA 640
                     +    I          + L       +            +      K   
Sbjct: 253 VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK--- 309

Query: 641 STVNASTSTEDL-----------------AITD--TTLDNSNQDTHDDASLPR-IDASGS 680
                    +DL                 +I D   T DN      D   L   I++S +
Sbjct: 310 ---YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK--LTTIIESSLN 364

Query: 681 TLLPESGRLALEGLAVNIPHDQMRMIHNINALISELALE------KEELVQALSSELAQS 734
            L P   R   + L+V  P           A I  + L        +  V  + ++L + 
Sbjct: 365 VLEPAEYRKMFDRLSV-FPPS---------AHIPTILLSLIWFDVIKSDVMVVVNKLHKY 414

Query: 735 SKLK 738
           S ++
Sbjct: 415 SLVE 418

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.7 bits (115), Expect = 7e-06
 Identities = 49/315 (15%), Positives = 94/315 (29%), Gaps = 115/315 (36%)

Query: 448 ENQHGF------YSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLT 501
           E+Q+ +      +     ++F    + ++D+ +   +     E    +            
Sbjct: 13  EHQYQYKDILSVFEDAFVDNFDC--KDVQDMPKSILS---KEEIDHIIMSK--------- 58

Query: 502 DSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEY----ANVRLECNAADERAKILA 557
           D+ +    +   L S+    QEE+  + VE E  R  Y    + ++ E            
Sbjct: 59  DAVSGTLRLFWTLLSK----QEEMVQKFVE-EVLRINYKFLMSPIKTEQR---------- 103

Query: 558 SEVIGLEEKALRLRSNELKLERQLENSQSEISSY----KKKISSLEKERQDFQSTIEALQ 613
                  + ++  R    + +R L N     + Y     +    L +          AL 
Sbjct: 104 -------QPSMMTRMYIEQRDR-LYNDNQVFAKYNVSRLQPYLKLRQ----------ALL 145

Query: 614 EEKKMMQSKLRKAS--------GSGKSIDFGKTAASTVNASTSTEDLAITDTTLDNSNQD 665
           E        LR A         GSGK+                   +A+ D  L    Q 
Sbjct: 146 E--------LRPAKNVLIDGVLGSGKTW------------------VAL-DVCLSYKVQC 178

Query: 666 THDDA----SLPRIDASGSTLLPESGRLALEGLAVNI------PHDQM-RMIHNINALIS 714
             D      +L   ++  + L        L+ L   I        D    +   I+++ +
Sbjct: 179 KMDFKIFWLNLKNCNSPETVLEM------LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA 232

Query: 715 ELA--LEKEELVQAL 727
           EL   L+ +     L
Sbjct: 233 ELRRLLKSKPYENCL 247

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 60.9 bits (148), Expect = 1e-09
 Identities = 25/159 (15%), Positives = 57/159 (35%), Gaps = 12/159 (7%)

Query: 465  LEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEE 524
            L++ I++  +E  +L   +        +   +  S  +             + +  LQEE
Sbjct: 933  LQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEE 992

Query: 525  IKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENS 584
            I     EL   + E   +    +      + L SE   L+E+   L++ + +L R++ + 
Sbjct: 993  IAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSE---LKEQNTLLKTEKEELNRRIHDQ 1049

Query: 585  QSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKL 623
              EI+         E   +      + L+ +    + + 
Sbjct: 1050 AKEIT---------ETMEKKLVEETKQLELDLNDERLRY 1079

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 60.1 bits (146), Expect = 2e-09
 Identities = 24/149 (16%), Positives = 54/149 (36%), Gaps = 3/149 (2%)

Query: 478  ALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRN 537
               RS+E  + L   L  +   L    ++Q      L  +M  L+     +  +L S   
Sbjct: 911  IEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVE 970

Query: 538  EYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISS 597
                   E   A  R   L  E+  L ++  + ++ +  +E   +  + E    ++ +S 
Sbjct: 971  RLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHET---EQLVSE 1027

Query: 598  LEKERQDFQSTIEALQEEKKMMQSKLRKA 626
            L+++    ++  E L         ++ + 
Sbjct: 1028 LKEQNTLLKTEKEELNRRIHDQAKEITET 1056

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 60.1 bits (146), Expect = 2e-09
 Identities = 28/164 (17%), Positives = 59/164 (35%), Gaps = 12/164 (7%)

Query: 463  AALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQ 522
              LE  I  L ++       ++      +SL  + ++L  +Y+ +   +      +   +
Sbjct: 924  IGLENKIMQLQRK-------IDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSE 976

Query: 523  EEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLE 582
            EE K     + S + E A +R E +      K +       + +         +L+ Q  
Sbjct: 977  EEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHE---TEQLVSELKEQNT 1033

Query: 583  NSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA 626
              ++E     ++I    KE  +     + L EE K ++  L   
Sbjct: 1034 LLKTEKEELNRRIHDQAKEITETME--KKLVEETKQLELDLNDE 1075

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 52.4 bits (126), Expect = 5e-07
 Identities = 29/163 (17%), Positives = 64/163 (39%), Gaps = 13/163 (7%)

Query: 466  EQHIEDLTQEKFALQRSLEASRALSE--SLAAENSSLTDSYNQQRSVVNQLKSEMEKLQE 523
              H     +    LQ       A  E   L  E  S+     + + +   L++++ +LQ 
Sbjct: 880  RVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSV----ERYKKLHIGLENKIMQLQR 935

Query: 524  EIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLEN 583
            +I  Q  E +S   +  N  LE   + E  K+ +       E+             ++ +
Sbjct: 936  KIDEQNKEYKSLLEKMNN--LEITYSTETEKLRS-----DVERLRMSEEEAKNATNRVLS 988

Query: 584  SQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA 626
             Q EI+  +K++   + E++  +   +  + E + + S+L++ 
Sbjct: 989  LQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQ 1031

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 44.3 bits (105), Expect = 1e-04
 Identities = 24/128 (18%), Positives = 51/128 (39%), Gaps = 6/128 (4%)

Query: 463  AALEQHIEDLTQEKFALQRSLEASRALSE---SLAAENSSLTDSYNQQRSVVNQLKSEME 519
                   E L  +   L+ S E ++  +    SL  E + L    +Q ++    ++   +
Sbjct: 956  ITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWAD 1015

Query: 520  KLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLER 579
            K + E +  + EL+    +   ++ E    + R    A E+    EK L   + +L+L+ 
Sbjct: 1016 KYKHETEQLVSELKE---QNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLELDL 1072

Query: 580  QLENSQSE 587
              E  + +
Sbjct: 1073 NDERLRYQ 1080

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 55.0 bits (132), Expect = 3e-08
 Identities = 23/171 (13%), Positives = 66/171 (38%)

Query: 457 KHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKS 516
           +  E  A   Q +E+  +     +R ++   + ++    +         + + +      
Sbjct: 101 RAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADR 160

Query: 517 EMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELK 576
           + E++  ++ +   +LE           +C   +E  K + + +  LE +A +    E K
Sbjct: 161 KYEEVARKLVIIESDLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDK 220

Query: 577 LERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKAS 627
            E +++    ++   + +    E+     + +I+ L++E    + K +  S
Sbjct: 221 YEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAIS 271

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 53.9 bits (129), Expect = 6e-08
 Identities = 24/168 (14%), Positives = 64/168 (38%)

Query: 459 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEM 518
            E     E+   D   +  +L R ++      +      ++      +     ++ +  M
Sbjct: 68  QEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAADESERGM 127

Query: 519 EKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLE 578
           + ++   +    ++E    +    +     AD + + +A +++ +E    R        E
Sbjct: 128 KVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSE 187

Query: 579 RQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA 626
            +    + EI +    + SLE + + +    +  +EE K++  KL++A
Sbjct: 188 GKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEA 235

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 53.5 bits (128), Expect = 8e-08
 Identities = 20/158 (12%), Positives = 60/158 (37%)

Query: 469 IEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQ 528
           ++ + ++   L+   E +   ++   A+  +  D   Q    +  L+ +++  ++E+   
Sbjct: 1   MDAIKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKY 60

Query: 529 LVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEI 588
              L+  + +      +   A+     L   +   EE+  R +       ++LE ++   
Sbjct: 61  SEALKDAQEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAA 120

Query: 589 SSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA 626
              ++ +  +E   Q  +  +E  + + K  +     A
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDA 158

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 52.7 bits (126), Expect = 1e-07
 Identities = 21/173 (12%), Positives = 61/173 (35%)

Query: 457 KHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKS 516
           +  ++  +L++ ++    E      +L+ ++   E    + +            +   + 
Sbjct: 38  QLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLFEE 97

Query: 517 EMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELK 576
           E+++ QE +   L +LE                + RA+    ++   E +    +     
Sbjct: 98  ELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAED 157

Query: 577 LERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGS 629
            +R+ E    ++   +  +   E+  +  +     L+EE K + + L+     
Sbjct: 158 ADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQ 210

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 50.0 bits (119), Expect = 9e-07
 Identities = 19/164 (11%), Positives = 64/164 (39%)

Query: 464 ALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQE 523
           A+++ ++ L  +K       + + A  ++    +  L D     +  +   + E++K  E
Sbjct: 3   AIKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSE 62

Query: 524 EIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLEN 583
            +K    +LE    +  +   +  + + R ++   E+   +E+         + E+  + 
Sbjct: 63  ALKDAQEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAADE 122

Query: 584 SQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKAS 627
           S+  +   + +    E++ +  +  ++  +   +    K  + +
Sbjct: 123 SERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVA 166

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 50.0 bits (119), Expect = 1e-06
 Identities = 17/167 (10%), Positives = 60/167 (35%)

Query: 460 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEME 519
           ++     + ++D  ++    ++    + A   SL        +  ++ +  +     ++E
Sbjct: 55  DELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLE 114

Query: 520 KLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLER 579
           + ++        ++   +       +    + + K         + K   +    + +E 
Sbjct: 115 EAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIES 174

Query: 580 QLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA 626
            LE ++      + K + LE+E +   + +++L+ + +    K  K 
Sbjct: 175 DLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKY 221

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 49.3 bits (117), Expect = 2e-06
 Identities = 26/170 (15%), Positives = 64/170 (37%)

Query: 457 KHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKS 516
           +   D  A E   + L  E  +LQ+ L+A+    +  +       +            ++
Sbjct: 24  EAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKKATDAEA 83

Query: 517 EMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELK 576
           ++  L   I++   EL+  +   A    +   A++ A      +  +E +A +       
Sbjct: 84  DVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEI 143

Query: 577 LERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA 626
            E QL+ ++       +K   + ++    +S +E  +E  ++ + K  + 
Sbjct: 144 QEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAEL 193

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 48.5 bits (115), Expect = 3e-06
 Identities = 18/168 (10%), Positives = 57/168 (33%)

Query: 459 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEM 518
            +     E+  ++  +    ++   +      E    +                ++  ++
Sbjct: 110 LQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKL 169

Query: 519 EKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLE 578
             ++ +++      E    + A +  E        K L ++     +K  +       L 
Sbjct: 170 VIIESDLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLS 229

Query: 579 RQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA 626
            +L+ +++     ++ ++ LEK   D +  + A + + K +  +L  A
Sbjct: 230 DKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHA 277

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 48.1 bits (114), Expect = 4e-06
 Identities = 22/164 (13%), Positives = 60/164 (36%)

Query: 460 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEME 519
           +     E+ ++ +       +  +E      +            Y +    +  ++S++E
Sbjct: 118 KAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLE 177

Query: 520 KLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLER 579
           + +E  ++   +      E   V     + + +A+  + +    EE+   L     + E 
Sbjct: 178 RAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAET 237

Query: 580 QLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKL 623
           + E ++  ++  +K I  LE E    +   +A+ EE     + +
Sbjct: 238 RAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDM 281

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 42.3 bits (99), Expect = 3e-04
 Identities = 17/116 (14%), Positives = 47/116 (40%)

Query: 512 NQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLR 571
           + +K +M+ L+ + +  L   +    +           ++    L  ++   E++  +  
Sbjct: 2   DAIKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYS 61

Query: 572 SNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKAS 627
                 + +LE ++ + +  +  ++SL +  Q F+  ++  QE       KL +A 
Sbjct: 62  EALKDAQEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAE 117

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Length = 256

 Score = 52.0 bits (124), Expect = 2e-07
 Identities = 18/117 (15%), Positives = 54/117 (46%), Gaps = 2/117 (1%)

Query: 511 VNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRL 570
           ++ L+  + + ++++   L + E+      N+  E  A   +       +     K   +
Sbjct: 20  IDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASI 79

Query: 571 RS--NELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRK 625
           +   +E+K ER+L +   E    K++ +   +E ++ Q+ I+   E+++ ++ ++ +
Sbjct: 80  QKKMSEIKSERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLE 136

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens} Length = 168

 Score = 43.2 bits (101), Expect = 7e-05
 Identities = 26/160 (16%), Positives = 64/160 (40%), Gaps = 4/160 (2%)

Query: 469 IEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQ 528
           +  L ++       L      +  L   ++ ++ S +Q  S+  +L+     L+      
Sbjct: 8   LSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQT 67

Query: 529 LVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEI 588
             +    +      R +     E    L + +  L+E+   L+ N  K+E + + +Q  +
Sbjct: 68  DKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDML 127

Query: 589 SSYKKKISSLEKER----QDFQSTIEALQEEKKMMQSKLR 624
           +  +K+ ++LE +     +  Q  +E    E K+ +++L 
Sbjct: 128 NHSEKEKNNLEIDLNYKLKSLQQRLEQEVNEHKVTKARLT 167

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens} Length = 168

 Score = 42.8 bits (100), Expect = 9e-05
 Identities = 20/111 (18%), Positives = 49/111 (44%)

Query: 517 EMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELK 576
           ++ +LQ++++     L +  +    +R       +    L S    L+E+   L +++ +
Sbjct: 7   KLSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQ 66

Query: 577 LERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKAS 627
            ++     Q+ + + ++      +   D Q+ I +LQEE K ++  L K  
Sbjct: 67  TDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVE 117

>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C Length = 409

 Score = 44.9 bits (106), Expect = 7e-05
 Identities = 18/115 (15%), Positives = 43/115 (37%), Gaps = 1/115 (0%)

Query: 512 NQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAK-ILASEVIGLEEKALRL 570
             +     K +     +L+E+E    +  N         +  K I  SE   L +   +L
Sbjct: 23  CGIADFFNKYRLTTDGELLEIEGLLQQATNSTGSIEYLIQHIKTIYPSEKQTLPQSIEQL 82

Query: 571 RSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRK 625
                K+  ++   ++ I +++  I  L        + I  L+++   ++S  ++
Sbjct: 83  TQKSKKIIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQLESHCQE 137

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A Length = 129

 Score = 41.8 bits (98), Expect = 1e-04
 Identities = 16/115 (13%), Positives = 49/115 (42%)

Query: 511 VNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRL 570
           +  +K E  +L+E ++      +    +  ++  E N    + +     +   EE+  +L
Sbjct: 15  MASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQL 74

Query: 571 RSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRK 625
             N+++LE +++     +   ++  + L  +++  +     L+ +   ++  L K
Sbjct: 75  IKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDLELTLAK 129

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A Length = 155

 Score = 41.9 bits (98), Expect = 2e-04
 Identities = 27/163 (16%), Positives = 70/163 (42%), Gaps = 14/163 (8%)

Query: 465 LEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEE 524
           LE  +E+L  + + L+  +   + L E                       + +  +L+EE
Sbjct: 5   LEDKVEELLSKNYHLENEVARLKKLLERAEER--------------AELSEGKSAELEEE 50

Query: 525 IKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENS 584
           +K     L+S   +      + +  +E  K+L+ ++   E +A     +  KLE+ +++ 
Sbjct: 51  LKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDL 110

Query: 585 QSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKAS 627
           + E+ + K K  ++ +E +  +  +E L  +   +++++ +  
Sbjct: 111 EDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLENEVARLK 153

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00