Citrus Sinensis ID: 004698

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730------
Protein Sequence
MMMKFFGKGKDSSPYNSLQPSTSPSSSRLPLNSTPVTGPARPIRLVYCDEKGKFRMDPEAVAALQLVKEPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYDQTGTYSTQIFSLAVLLSSMFIYNQMGGIDESAIDRLSLVTQMTKHIRIRASGGKTTPSELGQFSPIFVWLLRDFYLDLVEDNRKITPRDYLEIALRPVQGSGRDIAAKNEIRDSIRALFPDRECFTLVRPLSNENELQRLDQISLDRLRPEFRAGLDALTKFVFERTRPKQVGATVLTGPVLIGITESYLDAINNGAVPTISSSWQSVEEAECRRAYDSATETYMSTFDRSKPPEEVALGEAHEAAVQKALAVYNAGAVGVGLARKKYEGLLQKFFRKAFEDHKKNVYMEADIRCSSAIQSMERKLRAACHSSDASIDNVVKVLDGLISEYETSCHGPGKWQKLATFLQQSSEGPILDLVKRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKVSFFDIYSNKFYL
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccEEEcHHHHHHHHcccccEEEEEEEccccccHHHHHHHHHccccccccccccccccccEEEEcccccccccccccEEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccEEEEEEccccccccccccccHHHHHHHHccccccccHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHccccccccccHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cHHHHHccccccccccccccccccccccccccccccccccccEEEEEEccccEEEEcHHHHHHHHHccccEEEEEEEEcccccHHHHHHHHHccccccccccccccccccEEEEEccccccccccccEEEEEEcccccccccccccccHHHHHHHHHHHHHEEEcccccHcHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHcccEEEEEEHEEEEEEcccccccHHHHHHHHHcccccccHHHHHcccHHHHHHHHccccEEEEEccccccHHHHHHHHHccHHHccHHHHHHHHHHHHHHHHcccccEcccEEEccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
mmmkffgkgkdsspynslqpstspsssrlplnstpvtgparpirlvycdekgkfrmdPEAVAALQLVkepigvvsvcgrarqgkSFILNQllgrssgfqvasthrpctkglwlwsaplkrtaldgteyNLLLldsegidaydqtgtystQIFSLAVLLSSMFIYnqmggidesAIDRLSLVTQMTKHIRirasggkttpselgqfsPIFVWLLRDFYLDLvednrkitprDYLEIAlrpvqgsgrdiaAKNEIRDSIralfpdrecftlvrplsnenelqrldqISLDRLRPEFRAGLDALTKFVFertrpkqvgatvltgpVLIGITESYLdainngavptissswQSVEEAECRRAYDSATETYmstfdrskppeevalGEAHEAAVQKALAVYNAGAVGVGLARKKYEGLLQKFFRKAFEDHKKNVYMEADIRCSSAIQSMERKLRAachssdasIDNVVKVLDGLISeyetschgpgkwQKLATFLQQSSEGPILDLVKRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLqgenislrekSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKVSFFDIYSNKFYL
Flexible Loop (DISEMBL)
MMMKFFgkgkdsspynslqpstspsssrlplnstpvtgparpiRLVYCDEKGKFRMDPEAVAALQLVKEPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYDQTGTYSTQIFSLAVLLSSMFIYNQMGGIDESAIDRLSLVTQMTKHIRirasggkttpselgQFSPIFVWLLRDFYLDLVEDNRKITPRDYLEialrpvqgsgrdiaAKNEIRDSIRALFPDRECFTlvrplsnenelqrldqislDRLRPEFRAGLDALTKfvfertrpkqvgatvltgpvLIGITESYLDAINNGAVPtissswqsvEEAECRRAYDSATETYMSTFDRSKPPEEVALGEAHEAAVQKALAVYNAGAVGVGLARKKYEGLLQKFFRKAFEDHKKNVYMEADIRCSSAIQSMERKLRAachssdasiDNVVKVLDGLISEYETSCHGPGKWQKLATFLQQSSEGPILDLVKRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSeylkryddaindKKKLADDYTSRinnlqgenislrekssslsKTVDSLkneisdwkrKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIvqertskemqqredVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKVSFFDIYSNKFYL
Low Complexity Region (SEG)
MMMKFFGKGKDSSPYnslqpstspsssrlplnstpVTGPARPIRLVYCDEKGKFRMDPEAVAALQLVKEPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYDQTGTYSTQIFSLAVLLSSMFIYNQMGGIDESAIDRLSLVTQMTKHIRIRASGGKTTPSELGQFSPIFVWLLRDFYLDLVEDNRKITPRDYLEIALRPVQGSGRDIAAKNEIRDSIRALFPDRECFTLVRPLSNENELQRLDQISLDRLRPEFRAGLDALTKFVFERTRPKQVGATVLTGPVLIGITESYLDAINNGAVPTISSSWQSVEEAECRRAYDSATETYMSTFDRSKPPEEVALGEAHEAAVQKALAVYNAGAVGVGLARKKYEGLLQKFFRKAFEDHKKNVYMEADIRCSSAIQSMERKLRAACHSSDASIDNVVKVLDGLISEYETSCHGPGKWQKLATFLQQSSEGPILDLVKRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTaaearlaaareqalsaqeeVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAekeeemkekatkieHAEQCLTTLRLELKVSFFDIYSNKFYL
Disordered region (IsUnstruct)
*****************************************PIRLVYCDEKGKFRMDPEAVAALQLVKEPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYDQTGTYSTQIFSLAVLLSSMFIYNQMGGIDESAIDRLSLVTQMTKHIRIRASGG****SELGQFSPIFVWLLRDFYLDLVEDNRKITPRDYLEIALRPVQGSGRDIAAKNEIRDSIRALFPDRECFTLVRPLSNENELQRLDQISLDRLRPEFRAGLDALTKFVFERTRPKQVGATVLTGPVLIGITESYLDAINNGAVPTISSSWQSV**********************************HEAAVQKALAVYNAGAVGVGLARKKYEGLLQKFFRKAFEDHKKNVYMEADIRCSSAIQSMERKLRAACHSSDASIDNVVKVLDGLISEYETSCHGPGKWQKLATFLQQSSEGPILDLVKRLIDQIGSE**SLMLKYR********************************************************************************************************************************WKRKYGVAVRE*************************************************HAEQCLTTLRLELKVSFFDIYSNKFY*
Disordered Region (DISOPRED)
******************************************IRLVYCDEKGKFRMDPEAVAALQLVKEPIGVVSVCGRARQGKSFILNQLL**************CTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYDQTGTYSTQIFSLAVLLSSMFIYNQMGGIDESAIDRLSLVTQMTKHI**************GQFSPIFVWLLRDFYLDLVEDNRKITPRDYLEIALR*************EIRDSIRALFPDRECFTLVRPLSNENELQRLDQISLDRLRPEFRAGLDALTKFVFERTRPKQVGATVLTGPVLIGITESYLDAINNGAVPTISSSWQSVEEAECRRAYDSATETYMSTFDRSKPPEEVALGEAHEAAVQKALAVYNAGAVGVGLARKKYEGLLQKFFRKAFEDHKKNVYMEADIRCSSA********************NVVKVLDGLISE**********WQKLATFLQQSSEGPILDLVKRLIDQIGS*********************************************************************************************************************************************************************************************************************************
Disordered Region (DISEMBL)
***********************************VTGPARPIRLVYCDEKGKFRMDPEAVAALQLVKEPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYDQTGTYSTQIFSLAVLLSSMFIYNQMGGIDESAIDRLSLVTQMTKHIRIRASGGKTTPSELGQFSPIFVWLLRDFYLDLVEDNRKITPRDYLEIALRPVQGSGRDIAAKNEIRDSIRALFPDRECFTLVRPLSNENELQRLDQISLDRLRPEFRAGLDALTKFVFERTRPKQVGATVLTGPVLIGITESYLDAINNGAVPTIS************RAYDSATETYMSTFDRSKPPEEVALGEAHEAAVQKALAVYNAGAVGVGLARKKYEGLLQKFFRKAFEDHKKNVYMEADIRCSSAIQSMERKLRAACHSSDASIDNVVKVLDGLISEYETSCHGPGKWQKLATFLQQSSEGPILDLVKRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLR*************KNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTA**********************KRKYGVAVREAKAALEKAAIVQER*************EEFSSTL************KIEHAEQCLTTLRLELKVSFFDIYSNKFYL
Disordered Region (DISPRO)
************************************TGPARPIRLVYCDEKGKFRMDPEAVAALQLVKEPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYDQTGTYSTQIFSLAVLLSSMFIYNQMGGIDESAIDRLSLVTQMTKHIRIRAS**KTTPSELGQFSPIFVWLLRDFYLDLVEDNRKITPRDYLEIALRPVQGSGRDIAAKNEIRDSIRALFPDRECFTLVRPLSNENELQRLDQISLDRLRPEFRAGLDALTKFVFERTRPKQVGATVLTGPVLIGITESYLDAINNGAVPTISSSWQSVEEAECRRAYDSATETYMSTFDRSKPPEEVALGEAHEAAVQKALAVYNAGAVGVGLARKKYEGLLQKFFRKAFEDHKKNVYMEADIRCSSAIQSMERKLRAACHSSDASIDNVVKVLDGLISEYETSCHGPGKWQKLATFLQQSSEGPILDLVKRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAARE*ALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKVSFFDIYSNKFYL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MMMKFFGKGKDSSPYNSLQPSTSPSSSRLPLNSTPVTGPARPIRLVYCDEKGKFRMDPEAVAALQLVKEPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYDQTGTYSTQIFSLAVLLSSMFIYNQMGGIDESAIDRLSLVTQMTKHIRIRASGGKTTPSELGQFSPIFVWLLRDFYLDLVEDNRKITPRDYLEIALRPVQGSGRDIAAKNEIRDSIRALFPDRECFTLVRPLSNENELQRLDQISLDRLRPEFRAGLDALTKFVFERTRPKQVGATVLTGPVLIGITESYLDAINNGAVPTISSSWQSVEEAECRRAYDSATETYMSTFDRSKPPEEVALGEAHEAAVQKALAVYNAGAVGVGLARKKYEGLLQKFFRKAFEDHKKNVYMEADIRCSSAIQSMERKLRAACHSSDASIDNVVKVLDGLISEYETSCHGPGKWQKLATFLQQSSEGPILDLVKRLIDQIGSExxxxxxxxxxxxxxxxxxxxxxxxxxxxKSEYLKRYDDAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxQKAMEDQVCSExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxYGVAVREAKAALEKAAIVQERTSKEMQQREDVLxxxxxxxxxxxxxxxxxxxxxxxxxxxxLTTLRLELKVSFFDIYSNKFYL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	736	2.2.26 [Sep-21-2011]
Q61107	620	Guanylate-binding protein	no	no	0.475	0.564	0.330	6e-52
Q9H0R5	595	Guanylate-binding protein	yes	no	0.627	0.776	0.304	1e-51
P32456	591	Interferon-induced guanyl	no	no	0.433	0.539	0.333	2e-51
P32455	592	Interferon-induced guanyl	no	no	0.736	0.915	0.285	3e-51
Q8N8V2	638	Guanylate-binding protein	no	no	0.460	0.531	0.326	6e-51
Q5R9T9	633	Guanylate-binding protein	yes	no	0.482	0.560	0.318	7e-51
Q5D1D6	590	Interferon-induced guanyl	N/A	no	0.740	0.923	0.28	9e-51
Q5RBE1	592	Interferon-induced guanyl	no	no	0.736	0.915	0.285	1e-50
Q6ZN66	633	Guanylate-binding protein	no	no	0.480	0.559	0.323	2e-50
Q01514	589	Interferon-induced guanyl	no	no	0.476	0.595	0.326	6e-50

>sp|Q61107|GBP4_MOUSE Guanylate-binding protein 4 OS=Mus musculus GN=Gbp4 PE=1 SV=1

 Score =  206 bits (524), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 120/363 (33%), Positives = 203/363 (55%), Gaps = 13/363 (3%)

Query: 42  PIRLVYCDEKGKFRMDPEAVAALQLVKEPIGVVSVCGRARQGKSFILNQLLGRSSGFQVA 101
           PI LV  + K +  ++ EA+  L+ + +P+ VV++ G  R GKS+++N+L GR+ GF + 
Sbjct: 4   PICLVE-NWKNQLTVNLEAIRILEQIAQPLVVVAIVGLYRTGKSYLMNRLAGRNHGFSLG 62

Query: 102 STHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI-DAYDQTGTYSTQIFSLAVLLSS 160
           ST +  TKG+W+W  P          + L+LLD+EG+ D         + IF+LAVLLSS
Sbjct: 63  STVQSETKGIWMWCVPHPTKPT----HTLVLLDTEGLGDVEKGDPKNDSWIFALAVLLSS 118

Query: 161 MFIYNQMGGIDESAIDRLSLVTQMTKHIRIRASGGKTT---PSELGQFSPIFVWLLRDFY 217
            F+YN M  I++ A+++L  VT++T+ IR ++S  +      SE   F P F+W +RDF 
Sbjct: 119 TFVYNSMSTINQQALEQLHFVTELTQLIRAKSSPREDKVKDSSEFVGFFPDFIWAVRDFA 178

Query: 218 LDLVEDNRKITPRDYLEIALRPVQGSGRDIAAKNEIRDSIRALFPDRECFTLVRPLSNEN 277
           L+L  + R IT  +YLE AL+ +QG    +   N  R+ IR  FP R+CF   RP S++ 
Sbjct: 179 LELKLNGRPITEDEYLENALKLIQGDNLKVQQSNMTRECIRYFFPVRKCFVFDRPTSDKR 238

Query: 278 ELQRLDQISLDRLRPEFRAGLDALTKFVFERTRPKQV-GATVLTGPVLIGITESYLDAIN 336
            L +++ +  ++L   F+   +    ++F   + K + G  ++TG  L  + ++Y++AIN
Sbjct: 239 LLLQIENVPENQLERNFQVESEKFCSYIFTNGKTKTLRGGVIVTGNRLGTLVQTYVNAIN 298

Query: 337 NGAVPTISSSWQSVEEAECRRAYDSATETYMSTF-DRSKPPEEV--ALGEAHEAAVQKAL 393
           +G VP + ++  ++ + E   A   A + Y      R + P +    L   H A  ++A+
Sbjct: 299 SGTVPCLENAVTTLAQRENSIAVQKAADHYSEQMAQRMRLPTDTLQELLTVHAACEKEAI 358

Query: 394 AVY 396
           AV+
Sbjct: 359 AVF 361

Binds GTP, GDP and GMP. Hydrolyzes GTP very efficiently; GDP rather than GMP is the major reaction product. Plays a role in erythroid differentiation.
Mus musculus (taxid: 10090)

>sp|Q9H0R5|GBP3_HUMAN Guanylate-binding protein 3 OS=Homo sapiens GN=GBP3 PE=2 SV=3

 Score =  205 bits (522), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 150/493 (30%), Positives = 255/493 (51%), Gaps = 31/493 (6%)

Query: 36  VTGPARPIRLVYCDEKGKFRMDPEAVAALQLVKEPIGVVSVCGRARQGKSFILNQLLGRS 95
           +TGP   I     +  G+   +PEA+  L  + +P+ VV++ G  R GKS+++N+L G++
Sbjct: 7   MTGPMCLIE----NTNGELVANPEALKILSAITQPVVVVAIVGLYRTGKSYLMNKLAGKN 62

Query: 96  SGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI-DAYDQTGTYSTQIFSL 154
            GF + ST +  TKG+W+W  P  +      E+ L+LLD+EG+ D         + IF+L
Sbjct: 63  KGFSLGSTVKSHTKGIWMWCVPHPKKP----EHTLVLLDTEGLGDVKKGDNQNDSWIFTL 118

Query: 155 AVLLSSMFIYNQMGGIDESAIDRLSLVTQMTKHIRIRASGGKT---TPSELGQFSPIFVW 211
           AVLLSS  +YN MG I++ A+D+L  VT++T  IR ++S  +      ++   F P FVW
Sbjct: 119 AVLLSSTLVYNSMGTINQQAMDQLYYVTELTHRIRSKSSPDENENEDSADFVSFFPDFVW 178

Query: 212 LLRDFYLDLVEDNRKITPRDYLEIALRPVQGSGRDIAAKNEIRDSIRALFPDRECFTLVR 271
            LRDF LDL  D + +TP +YLE +L+  QG+ +     N  R  IR  FP ++CF    
Sbjct: 179 TLRDFSLDLEADGQPLTPDEYLEYSLKLTQGTSQKDKNFNLPRLCIRKFFPKKKCFVFDL 238

Query: 272 PLSNENELQRLDQISLDRLRPEFRAGLDALTKFVFERTRPKQV-GATVLTGPVLIGITES 330
           P+ +  +L +L+++  + L PEF   +     ++F  ++ K + G   + GP L  +  +
Sbjct: 239 PI-HRRKLAQLEKLQDEELDPEFVQQVADFCSYIFSNSKTKTLSGGIKVNGPRLESLVLT 297

Query: 331 YLDAINNGAVPTISSSWQSVEEAECRRAYDSATETYMSTF-DRSKPPEEV--ALGEAHEA 387
           Y++AI+ G +P + ++  ++ + E   A   A   Y      + + P E    L + H  
Sbjct: 298 YINAISRGDLPCMENAVLALAQIENSAAVQKAIAHYDQQMGQKVQLPAETLQELLDLHRV 357

Query: 388 AVQKALAVY--NAGAVGVGLARKKYEGLLQKFFRKAFEDHKKNVYMEADIRCSSAIQ--- 442
           + ++A  VY  N+      L +KK    L K   K  +  K+N    +D RCS+ +Q   
Sbjct: 358 SEREATEVYMKNSFKDVDHLFQKKLAAQLDK---KRDDFCKQNQEASSD-RCSALLQVIF 413

Query: 443 -SMERKLRAACHSSDASIDNVVKVLDGLISE-YETSCHGPGKWQKLATFLQQSSEGPILD 500
             +E +++A  +S        ++ L  L  + YE    G    + L T+L+  S+  + D
Sbjct: 414 SPLEEEVKAGIYSKPGGYCLFIQKLQDLEKKYYEEPRKGIQAEEILQTYLK--SKESVTD 471

Query: 501 LVKRLIDQIGSER 513
            + +  DQI +E+
Sbjct: 472 AILQ-TDQILTEK 483

Binds GTP, GDP and GMP.

Homo sapiens (taxid: 9606)

>sp|P32456|GBP2_HUMAN Interferon-induced guanylate-binding protein 2 OS=Homo sapiens GN=GBP2 PE=1 SV=3

 Score =  204 bits (518), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 110/330 (33%), Positives = 188/330 (56%), Gaps = 11/330 (3%)

Query: 42  PIRLVYCDEKGKFRMDPEAVAALQLVKEPIGVVSVCGRARQGKSFILNQLLGRSSGFQVA 101
           P+ L+  + KG+  ++PEA+  L  + +P+ VV++ G  R GKS+++N+L G+ +GF + 
Sbjct: 10  PMSLID-NTKGQLVVNPEALKILSAITQPVVVVAIVGLYRTGKSYLMNKLAGKKNGFSLG 68

Query: 102 STHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI-DAYDQTGTYSTQIFSLAVLLSS 160
           ST +  TKG+W+W  P  +      E+ L+LLD+EG+ D         + IF+LA+LLSS
Sbjct: 69  STVKSHTKGIWMWCVPHPKKP----EHTLVLLDTEGLGDIEKGDNENDSWIFALAILLSS 124

Query: 161 MFIYNQMGGIDESAIDRLSLVTQMTKHIRIRASGGKTT---PSELGQFSPIFVWLLRDFY 217
            F+YN MG I++ A+D+L  VT++T  I+  +S G  +    ++   F P FVW LRDF 
Sbjct: 125 TFVYNSMGTINQQAMDQLHYVTELTDRIKANSSPGNNSVDDSADFVSFFPAFVWTLRDFT 184

Query: 218 LDLVEDNRKITPRDYLEIALRPVQGSGRDIAAKNEIRDSIRALFPDRECFTLVRPLSNEN 277
           L+L  D   IT  DYLE++L+  +G+ +   + N+ R  IR  FP R+CF    P + + 
Sbjct: 185 LELEVDGEPITADDYLELSLKLRKGTDKKSKSFNDPRLCIRKFFPKRKCFVFDWP-APKK 243

Query: 278 ELQRLDQISLDRLRPEFRAGLDALTKFVFERTRPKQV-GATVLTGPVLIGITESYLDAIN 336
            L  L+Q+  + L P+F   +     ++   +  K + G   + GP L  +  +Y++AI+
Sbjct: 244 YLAHLEQLKEEELNPDFIEQVAEFCSYILSHSNVKTLSGGIPVNGPRLESLVLTYVNAIS 303

Query: 337 NGAVPTISSSWQSVEEAECRRAYDSATETY 366
           +G +P + ++  ++ + E   A + A   Y
Sbjct: 304 SGDLPCMENAVLALAQIENSAAVEKAIAHY 333

Binds GTP, GDP and GMP. Hydrolyzes GTP very efficiently; GDP rather than GMP is the major reaction product.

Homo sapiens (taxid: 9606)

>sp|P32455|GBP1_HUMAN Interferon-induced guanylate-binding protein 1 OS=Homo sapiens GN=GBP1 PE=1 SV=2

 Score =  203 bits (517), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 171/599 (28%), Positives = 296/599 (49%), Gaps = 57/599 (9%)

Query: 36  VTGPARPIRLVYCDEKGKFRMDPEAVAALQLVKEPIGVVSVCGRARQGKSFILNQLLGRS 95
           +TGP   I     +  G+   +PEA+  L  + +P+ VV++ G  R GKS+++N+L G+ 
Sbjct: 7   MTGPMCLIE----NTNGRLMANPEALKILSAITQPMVVVAIVGLYRTGKSYLMNKLAGKK 62

Query: 96  SGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI-DAYDQTGTYSTQIFSL 154
            GF + ST +  TKG+W+W  P  +       + L+LLD+EG+ D         + IF+L
Sbjct: 63  KGFSLGSTVQSHTKGIWMWCVPHPKKP----GHILVLLDTEGLGDVEKGDNQNDSWIFAL 118

Query: 155 AVLLSSMFIYNQMGGIDESAIDRLSLVTQMTKHIRIRASGGKT-----TPSELGQFSPIF 209
           AVLLSS F+YN +G I++ A+D+L  VT++T  IR ++S  +        ++   F P F
Sbjct: 119 AVLLSSTFVYNSIGTINQQAMDQLYYVTELTHRIRSKSSPDENENEVEDSADFVSFFPDF 178

Query: 210 VWLLRDFYLDLVEDNRKITPRDYLEIALRPVQGSGRDIAAKNEIRDSIRALFPDRECFTL 269
           VW LRDF LDL  D + +TP +YL  +L+  +G+ +     N  R  IR  FP ++CF  
Sbjct: 179 VWTLRDFSLDLEADGQPLTPDEYLTYSLKLKKGTSQKDETFNLPRLCIRKFFPKKKCFVF 238

Query: 270 VRPLSNENELQRLDQISLDRLRPEFRAGLDALTKFVFERTRPKQV-GATVLTGPVLIGIT 328
            RP+ +  +L +L+++  + L PEF   +     ++F  ++ K + G   + GP L  + 
Sbjct: 239 DRPV-HRRKLAQLEKLQDEELDPEFVQQVADFCSYIFSNSKTKTLSGGIQVNGPRLESLV 297

Query: 329 ESYLDAINNGAVPTISSSWQSVEEAECRRAYDSATETYMSTF-DRSKPPEEV--ALGEAH 385
            +Y++AI++G +P + ++  ++ + E   A   A   Y      + + P E    L + H
Sbjct: 298 LTYVNAISSGDLPCMENAVLALAQIENSAAVQKAIAHYEQQMGQKVQLPTETLQELLDLH 357

Query: 386 EAAVQKALAVYNAGAVGVGLARKKYEGLLQKFFRKAFEDH-----KKNVYMEADIRCSSA 440
             + ++A+ V+      +  + K  + L QK      E       K+N    +D RCS+ 
Sbjct: 358 RDSEREAIEVF------IRSSFKDVDHLFQKELAAQLEKKRDDFCKQNQEASSD-RCSAL 410

Query: 441 IQ----SMERKLRAACHSSDASIDNVVKVLDGLISE-YETSCHGPGKWQKLATFL--QQS 493
           +Q     +E +++A  +S        V+ L  L  + YE    G    + L T+L  ++S
Sbjct: 411 LQVIFSPLEEEVKAGIYSKPGGYRLFVQKLQDLKKKYYEEPRKGIQAEEILQTYLKSKES 470

Query: 494 SEGPILDLVKRLID---QIGSERSSLMLKYRSIEDNMKLLK-------KQLEDSERYKSE 543
               IL   + L +   +I  ER    +K  S + + K+L+       + +E  ER   E
Sbjct: 471 MTDAILQTDQTLTEKEKEIEVER----VKAESAQASAKMLQEMQRKNEQMMEQKERSYQE 526

Query: 544 YLKRYDDAI-NDKKKLADDYTSRIN-NLQGENISLREKSSSLSKTVDSLKNEISDWKRK 600
           +LK+  + + ND+ +L  +    +   LQ +   L+E      K    +KNEI D + K
Sbjct: 527 HLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKE---GFQKESRIMKNEIQDLQTK 582

Binds GTP, GDP and GMP.

Homo sapiens (taxid: 9606)

>sp|Q8N8V2|GBP7_HUMAN Guanylate-binding protein 7 OS=Homo sapiens GN=GBP7 PE=2 SV=2

 Score =  202 bits (515), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 118/361 (32%), Positives = 195/361 (54%), Gaps = 22/361 (6%)

Query: 49  DEKGKFRMDPEAVAALQLVKEPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCT 108
           + KG   ++ EA+  L  + +P+ VV++ G  R GKS+++N+L G++ GF +  T +  T
Sbjct: 16  NTKGHLVVNSEALEILSAITQPVVVVAIVGLYRTGKSYLMNKLAGKNKGFPLGCTVKSET 75

Query: 109 KGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYDQTGTYS-TQIFSLAVLLSSMFIYNQM 167
           KG+W+W  P          + L+LLD+EG+   +++   S + IF+LAVLLSS F+YN M
Sbjct: 76  KGIWMWCVPHPSKP----NHTLILLDTEGLGDMEKSDPKSDSWIFALAVLLSSSFVYNSM 131

Query: 168 GGIDESAIDRLSLVTQMTKHIRIRASGGKTTP--------SELGQFSPIFVWLLRDFYLD 219
           G I+  A+++L  VT++T+ IR      K+ P        SE   F P F+W +RDF L+
Sbjct: 132 GTINHQALEQLHYVTELTELIR-----AKSCPRPDEVEDSSEFVSFFPDFIWTVRDFTLE 186

Query: 220 LVEDNRKITPRDYLEIALRPVQGSGRDIAAKNEIRDSIRALFPDRECFTLVRPLSNENEL 279
           L  D   IT  +YLE AL+ + G    I   N+ R+ IR  FP ++CF   RP++++  L
Sbjct: 187 LKLDGHPITEDEYLENALKLISGKNPQIQNSNKPREWIRHFFPKQKCFVFDRPINDKKLL 246

Query: 280 QRLDQISLDRLRPEFRAGLDALTKFVFERTRPKQVGATVL-TGPVLIGITESYLDAINNG 338
             ++++  D+L   F+   +    ++F   + K +   +L TG  L  + E+YLDAIN+G
Sbjct: 247 LHVEEVREDQLDSNFQMQSENFCSYIFTHAKTKTLREGILVTGNRLGMLVETYLDAINSG 306

Query: 339 AVPTISSSWQSVEEAECRRAYDSATETY---MSTFDRSKPPEEVALGEAHEAAVQKALAV 395
           A P + ++   + + E   A   A   Y   M+   R        L + H    ++A+AV
Sbjct: 307 ATPCLENAMAVLAQCENSAAVQRAANHYSQQMAQQVRFPTDTLQELLDVHAVCEREAIAV 366

Query: 396 Y 396
           +
Sbjct: 367 F 367

Binds GTP, GDP and GMP.

Homo sapiens (taxid: 9606)

>sp|Q5R9T9|GBP6_PONAB Guanylate-binding protein 6 OS=Pongo abelii GN=GBP6 PE=2 SV=1

 Score =  202 bits (515), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 118/370 (31%), Positives = 207/370 (55%), Gaps = 15/370 (4%)

Query: 37  TGPAR--PIRLVYCDEKGKFRMDPEAVAALQLVKEPIGVVSVCGRARQGKSFILNQLLGR 94
           +GP    PI LV  + + +  ++ +A+  L+ + +P+ VV++ G  R GKS+++N L G+
Sbjct: 3   SGPKMLAPICLVENNNE-QLLVNQQAIQILEKISQPVVVVAIVGLYRTGKSYLMNHLAGQ 61

Query: 95  SSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI-DAYDQTGTYSTQIFS 153
           + GF + ST +  TKG+W+W  P          + L+LLD+EG+ D         + IF+
Sbjct: 62  NHGFPLGSTVQSETKGIWMWCVPHPSKP----NHTLVLLDTEGLGDVEKGDPKNDSWIFA 117

Query: 154 LAVLLSSMFIYNQMGGIDESAIDRLSLVTQMTKHIRIRAS---GGKTTPSELGQFSPIFV 210
           LAVLL S FIYN M  I+  A+++L  VT++T+ I+ ++S    G    +E   F P F+
Sbjct: 118 LAVLLCSTFIYNSMSTINHQALEQLHYVTELTELIKAKSSPRPDGVDDSTEFVSFFPDFI 177

Query: 211 WLLRDFYLDLVEDNRKITPRDYLEIALRPVQGSGRDIAAKNEIRDSIRALFPDRECFTLV 270
           W +RDF L+L  +   IT  +YLE AL+ +QG+   +   N  R+ IR  FP R+CF   
Sbjct: 178 WTVRDFTLELKLNGHPITEDEYLENALKLIQGNNPRVQTSNLPRECIRRFFPKRKCFIFD 237

Query: 271 RPLSNENELQRLDQISLDRLRPEFRAGLDALTKFVFERTRPKQV-GATVLTGPVLIGITE 329
           RP ++++ L  ++++S  +L P+F+   +  + ++F   R K +    ++TG  L  +  
Sbjct: 238 RPTNDKDLLANIEKVSEKQLDPKFQEQTNIFSSYIFTHARTKTLREGIIVTGNRLGTLAV 297

Query: 330 SYLDAINNGAVPTISSSWQSVEEAECRRAYDSATETYMSTF-DRSKPPEEV--ALGEAHE 386
           +Y++A+N+GAVP + ++  ++ + E   A   A + Y      R K P +    L + H 
Sbjct: 298 TYVEAVNSGAVPCLENAVITLAQRENSAAVQRAADYYSQQMAQRVKFPTDTLQELLDMHA 357

Query: 387 AAVQKALAVY 396
           A  ++A+A++
Sbjct: 358 ACEREAIAIF 367

Binds GTP, GDP and GMP.

Pongo abelii (taxid: 9601)

>sp|Q5D1D6|GBP1_CHLAE Interferon-induced guanylate-binding protein 1 OS=Chlorocebus aethiops GN=GBP1 PE=2 SV=1

 Score =  202 bits (513), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 168/600 (28%), Positives = 297/600 (49%), Gaps = 55/600 (9%)

Query: 36  VTGPARPIRLVYCDEKGKFRMDPEAVAALQLVKEPIGVVSVCGRARQGKSFILNQLLGRS 95
           +TGP   I     +  G+  ++PEA+  L  + +P+ VV++ G  R GKS+++N+L G+ 
Sbjct: 7   MTGPMCLIE----NTNGRLMVNPEALKILSAITQPVVVVAIVGLYRTGKSYLMNKLAGKK 62

Query: 96  SGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI-DAYDQTGTYSTQIFSL 154
            GF + ST +  TKG+W+W  P  +       + L+LLD+EG+ D         + IF+L
Sbjct: 63  KGFSLGSTVQSHTKGIWMWCVPHPKKP----GHVLVLLDTEGLGDVEKGDNQNDSWIFAL 118

Query: 155 AVLLSSMFIYNQMGGIDESAIDRLSLVTQMTKHIRIRASGGKT---TPSELGQFSPIFVW 211
           A+LLSS F+YN MG I++ A+D+L  VT++T  IR ++S  +      ++   F P FVW
Sbjct: 119 AILLSSTFVYNSMGTINQQAMDQLHYVTELTHRIRSKSSPDENENEDSADFVSFFPDFVW 178

Query: 212 LLRDFYLDLVEDNRKITPRDYLEIALRPVQGSGRDIAAKNEIRDSIRALFPDRECFTLVR 271
            LRDF LDL  D + IT  +YL  +L+  +G+       N  R  IR  FP ++CF   R
Sbjct: 179 TLRDFSLDLEADGQPITADEYLTYSLKLKKGTSEKDKTFNLPRLCIRKFFPKKKCFVFDR 238

Query: 272 PLSNENELQRLDQISLDRLRPEFRAGLDALTKFVFERTRPKQV-GATVLTGPVLIGITES 330
           P+ +  +L +L+++  + L PEF   +     ++F  ++ K + G   + GP L  +  +
Sbjct: 239 PV-HRKKLAQLEKLHDEELDPEFVQQVADFCSYIFSNSKTKTLSGGIKVNGPRLESLVLT 297

Query: 331 YLDAINNGAVPTISSSWQSVEEAECRRAYDSATETYMSTF-DRSKPPEEV--ALGEAHEA 387
           Y++AI++G +P + ++  ++ + E   A   A   Y      + + P E    L + H  
Sbjct: 298 YVNAISSGDLPCMENAVLALAQIENSAAVQKAVAHYEQQMGQKVQLPTETLQELLDLHRD 357

Query: 388 AVQKALAVYNAGAVGVGLARKKYEGLLQKFFRKAFEDH-----KKNVYMEADIRCSSAIQ 442
           + ++A+ V+      +  + K  + L QK      E       K+N    +D RCS+ +Q
Sbjct: 358 SEREAIEVF------IRSSFKDVDHLFQKELAAQLEKKRDDFCKQNQEASSD-RCSALLQ 410

Query: 443 S----MERKLRAACHSSDASIDNVVKVLDGLISE-YETSCHGPGKWQKLATFL--QQSSE 495
                +E +++   +S        ++ L  L  + YE    G    + L T+L  ++S  
Sbjct: 411 DIFSPLEEEVKMGIYSKPGGYRLFIQKLQDLKKKYYEEPRKGIQAEEILQTYLKSKESMT 470

Query: 496 GPILDLVKRLID---QIGSERSSLMLKYRSIEDNMKLLK-------KQLEDSERYKSEYL 545
             IL   + L +   +I  ER    +K  S + + K+L+       + +E  ER   E+L
Sbjct: 471 DAILQTDQTLTEKEKEIEVER----VKAESAQASTKMLQEIQRKNEQMMEQKERSYQEHL 526

Query: 546 KRYDDAIN-DKKKLADDYTSRIN-NLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQ 603
           K+  + +  D+ +L  +    +   LQ +   L+E   + S+    ++NEI D ++K  Q
Sbjct: 527 KQLTEKMERDRAQLLKEQERTLALKLQEQERLLKEGFQTESR---KMQNEIQDLQKKMRQ 583

Binds GTP, GDP and GMP.

Chlorocebus aethiops (taxid: 9534)

>sp|Q5RBE1|GBP1_PONAB Interferon-induced guanylate-binding protein 1 OS=Pongo abelii GN=GBP1 PE=2 SV=1

 Score =  202 bits (513), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 171/599 (28%), Positives = 294/599 (49%), Gaps = 57/599 (9%)

Query: 36  VTGPARPIRLVYCDEKGKFRMDPEAVAALQLVKEPIGVVSVCGRARQGKSFILNQLLGRS 95
           +TGP   I        G+   +PEA+  L  + +P+ VV++ G  R GKS+++N+L G+ 
Sbjct: 7   MTGPMCLIE----STNGRLMANPEALKILSAITQPMVVVAIVGLYRTGKSYLMNKLAGKK 62

Query: 96  SGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI-DAYDQTGTYSTQIFSL 154
            GF + ST +  TKG+W+W  P  +       + L+LLD+EG+ D         + IF+L
Sbjct: 63  KGFSLGSTVQSHTKGIWMWCVPHPKKP----GHILVLLDTEGLGDVEKGDNQNDSWIFAL 118

Query: 155 AVLLSSMFIYNQMGGIDESAIDRLSLVTQMTKHIRIRASGGKTT-----PSELGQFSPIF 209
           AVLLSS F+YN +G I++ A+D+L  VT++T  IR ++S  +        ++   F P F
Sbjct: 119 AVLLSSTFVYNSIGTINQQAMDQLYYVTELTHRIRSKSSPDENENEVEDSADFVSFFPDF 178

Query: 210 VWLLRDFYLDLVEDNRKITPRDYLEIALRPVQGSGRDIAAKNEIRDSIRALFPDRECFTL 269
           VW LRDF LDL  D + +TP +YL  +L+  +G+ +     N  R  IR  FP ++CF  
Sbjct: 179 VWTLRDFSLDLEADGQPLTPDEYLTYSLKLKKGTSQKDETFNLPRLCIRKFFPKKKCFVF 238

Query: 270 VRPLSNENELQRLDQISLDRLRPEFRAGLDALTKFVFERTRPKQV-GATVLTGPVLIGIT 328
            RP+ +  +L +L+++  + L PEF   +     ++F  ++ K + G   + GP L  + 
Sbjct: 239 DRPV-HRRKLAQLEKLQDEELDPEFVQQVADFCSYIFSNSKTKTLSGGIQVNGPRLESLV 297

Query: 329 ESYLDAINNGAVPTISSSWQSVEEAECRRAYDSATETYMSTFDRSK--PPEEVA-LGEAH 385
            +Y++AI++G +P + ++  ++ + E   A   A   Y     +    P E +  L + H
Sbjct: 298 LTYVNAISSGDLPCMENAVLALAQIENSAAVQKAIAHYEQQMGQKVQLPTESLQELLDLH 357

Query: 386 EAAVQKALAVYNAGAVGVGLARKKYEGLLQKFFRKAFEDH-----KKNVYMEADIRCSSA 440
             + ++A+ V+      +  + K  + L QK      E       K+N    +D RCS  
Sbjct: 358 RDSEREAIEVF------IRSSFKDVDHLFQKELAAQLEKKRDDFCKQNQEASSD-RCSGL 410

Query: 441 IQ----SMERKLRAACHSSDASIDNVVKVLDGLISE-YETSCHGPGKWQKLATFL--QQS 493
           +Q     +E +++A  +S        V+ L  L  + YE    G    + L T+L  ++S
Sbjct: 411 LQVIFSPLEEEVKAGIYSKPGGYRLFVQKLQDLKKKYYEEPRKGIQAEEILQTYLKSKES 470

Query: 494 SEGPILDLVKRLID---QIGSERSSLMLKYRSIEDNMKLLK-------KQLEDSERYKSE 543
               IL   + L +   +I  ER    +K  S + + K+L+       + +E  ER   E
Sbjct: 471 MTDAILQTDQTLTEKEKEIEVER----VKAESAQASAKMLQEMQRKNEQMMEQKERSYQE 526

Query: 544 YLKRYDDAI-NDKKKLADDYTSRIN-NLQGENISLREKSSSLSKTVDSLKNEISDWKRK 600
           +LK+  + + ND+ +L  +    +   LQ +   L+E      K    +KNEI D + K
Sbjct: 527 HLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKE---GFQKESRIMKNEIQDLQTK 582

Binds GTP, GDP and GMP.

Pongo abelii (taxid: 9601)

>sp|Q6ZN66|GBP6_HUMAN Guanylate-binding protein 6 OS=Homo sapiens GN=GBP6 PE=2 SV=1

 Score =  201 bits (511), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 120/371 (32%), Positives = 207/371 (55%), Gaps = 17/371 (4%)

Query: 37  TGPAR--PIRLVYCDEKGKFRMDPEAVAALQLVKEPIGVVSVCGRARQGKSFILNQLLGR 94
           +GP    P+ LV  + + +  ++ +A+  L+ + +P+ VV++ G  R GKS+++N L G+
Sbjct: 3   SGPKMLAPVCLVENNNE-QLLVNQQAIQILEKISQPVVVVAIVGLYRTGKSYLMNHLAGQ 61

Query: 95  SSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI-DAYDQTGTYSTQIFS 153
           + GF + ST +  TKG+W+W  P          + L+LLD+EG+ D         + IF+
Sbjct: 62  NHGFPLGSTVQSETKGIWMWCVPHPSKP----NHTLVLLDTEGLGDVEKGDPKNDSWIFA 117

Query: 154 LAVLLSSMFIYNQMGGIDESAIDRLSLVTQMTKHIRIRAS---GGKTTPSELGQFSPIFV 210
           LAVLL S F+YN M  I+  A+++L  VT++T+ I+ ++S    G    +E   F P F+
Sbjct: 118 LAVLLCSTFVYNSMSTINHQALEQLHYVTELTELIKAKSSPRPDGVEDSTEFVSFFPDFL 177

Query: 211 WLLRDFYLDLVEDNRKITPRDYLEIALRPVQGSGRDIAAKNEIRDSIRALFPDRECFTLV 270
           W +RDF L+L  +   IT  +YLE AL+ +QG+   +   N  R+ IR  FP R+CF   
Sbjct: 178 WTVRDFTLELKLNGHPITEDEYLENALKLIQGNNPRVQTSNFPRECIRRFFPKRKCFVFD 237

Query: 271 RPLSNENELQRLDQISLDRLRPEFRAGLDALTKFVFERTRPKQV--GATVLTGPVLIGIT 328
           RP ++++ L  ++++S  +L P+F+   +    ++F   R K +  G TV TG  L  + 
Sbjct: 238 RPTNDKDLLANIEKVSEKQLDPKFQEQTNIFCSYIFTHARTKTLREGITV-TGNRLGTLA 296

Query: 329 ESYLDAINNGAVPTISSSWQSVEEAECRRAYDSATETYMSTF-DRSKPPEEV--ALGEAH 385
            +Y++AIN+GAVP + ++  ++ + E   A   A + Y      R K P +    L + H
Sbjct: 297 VTYVEAINSGAVPCLENAVITLAQRENSAAVQRAADYYSQQMAQRVKLPTDTLQELLDMH 356

Query: 386 EAAVQKALAVY 396
            A  ++A+A++
Sbjct: 357 AACEREAIAIF 367

Binds GTP, GDP and GMP.

Homo sapiens (taxid: 9606)

>sp|Q01514|GBP1_MOUSE Interferon-induced guanylate-binding protein 1 OS=Mus musculus GN=Gbp1 PE=1 SV=1

 Score =  199 bits (506), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 119/365 (32%), Positives = 200/365 (54%), Gaps = 14/365 (3%)

Query: 40  ARPIRLVYCDEKGKFRMDPEAVAALQLVKEPIGVVSVCGRARQGKSFILNQLLGRSSGFQ 99
           + P+ L+   E  +  ++ EA+  L  + +P+ VV++ G  R GKS+++N+L G+ +GF 
Sbjct: 8   SEPMCLIENTE-AQLVINQEALRILSAITQPVVVVAIVGLYRTGKSYLMNKLAGKRTGFS 66

Query: 100 VASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYDQTGTYS-TQIFSLAVLL 158
           + ST +  TKG+W+W  P  + A       L+LLD+EG++  ++    +   IF+LAVLL
Sbjct: 67  LGSTVQSHTKGIWMWCVPHPKKAGQ----TLVLLDTEGLEDVEKGDNQNDCWIFALAVLL 122

Query: 159 SSMFIYNQMGGIDESAIDRLSLVTQMTKHIRIRASGGKT---TPSELGQFSPIFVWLLRD 215
           SS FIYN +G I++ A+D+L  VT++T  I+ ++S  ++     +    F PIFVW LRD
Sbjct: 123 SSTFIYNSIGTINQQAMDQLHYVTELTDLIKSKSSPDQSDVDNSANFVGFFPIFVWTLRD 182

Query: 216 FYLDLVEDNRKITPRDYLEIALRPVQGSGRDIAAKNEIRDSIRALFPDRECFTLVRPLSN 275
           F LDL  D   ITP +YLE +L   +G+  +    N  R  IR  FP R+CF   RP  +
Sbjct: 183 FSLDLEFDGESITPDEYLETSLALRKGTDENTKKFNMPRLCIRKFFPKRKCFIFDRP-GD 241

Query: 276 ENELQRLDQISLDRLRPEFRAGLDALTKFVFERTRPKQV-GATVLTGPVLIGITESYLDA 334
             +L +L+ I  D+L  EF   +   T ++F  +  K + G   + GP L  + ++Y+ A
Sbjct: 242 RKQLSKLEWIQEDQLNKEFVEQVAEFTSYIFSYSGVKTLSGGITVNGPRLKSLVQTYVSA 301

Query: 335 INNGAVPTISSSWQSVEEAECRRAYDSATETYMSTFDR--SKPPEEVA-LGEAHEAAVQK 391
           I +G +P + ++  ++ + E   A   A   Y    ++    P E +  L + H    ++
Sbjct: 302 ICSGELPCMENAVLTLAQIENSAAVQKAITYYEEQMNQKIHMPTETLQELLDLHRTCERE 361

Query: 392 ALAVY 396
           A+ V+
Sbjct: 362 AIEVF 366

Binds GTP, GDP and GMP.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	736
224077052	1070	predicted protein [Populus trichocarpa]	0.937	0.644	0.811	0.0
255536707	1065	interferon-induced guanylate-binding pro	0.978	0.676	0.773	0.0
356548658	1060	PREDICTED: uncharacterized protein LOC10	0.991	0.688	0.764	0.0
356521418	1060	PREDICTED: uncharacterized protein LOC10	0.991	0.688	0.763	0.0
145358912	1082	Guanylate-binding protein [Arabidopsis t	0.983	0.669	0.744	0.0
449433796	1062	PREDICTED: uncharacterized protein LOC10	0.975	0.676	0.776	0.0
356546617	1059	PREDICTED: uncharacterized protein LOC10	0.971	0.675	0.764	0.0
9757727	1060	unnamed protein product [Arabidopsis tha	0.953	0.662	0.715	0.0
222632561	1062	hypothetical protein OsJ_19548 [Oryza sa	0.918	0.636	0.688	0.0
242091367	1051	hypothetical protein SORBIDRAFT_09g02844	0.953	0.667	0.647	0.0

>gi|224077052|ref|XP_002305110.1| predicted protein [Populus trichocarpa] gi|222848074|gb|EEE85621.1| predicted protein [Populus trichocarpa]

 Score = 1185 bits (3065), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 560/690 (81%), Positives = 629/690 (91%)

Query: 36  VTGPARPIRLVYCDEKGKFRMDPEAVAALQLVKEPIGVVSVCGRARQGKSFILNQLLGRS 95
           VTGPARPIRLVY DEKGKFRMD EAVAALQLVKEPIGVVSVCGR+RQGKSFILNQLLGRS
Sbjct: 37  VTGPARPIRLVYYDEKGKFRMDSEAVAALQLVKEPIGVVSVCGRSRQGKSFILNQLLGRS 96

Query: 96  SGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYDQTGTYSTQIFSLA 155
           SGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA+DQTGTYSTQIFSLA
Sbjct: 97  SGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAFDQTGTYSTQIFSLA 156

Query: 156 VLLSSMFIYNQMGGIDESAIDRLSLVTQMTKHIRIRASGGKTTPSELGQFSPIFVWLLRD 215
           VLLSSMFIYNQMGGIDE+A+DRLSLVTQMTKHIR+RASGG+++ SELGQFSPIFVWLLRD
Sbjct: 157 VLLSSMFIYNQMGGIDEAALDRLSLVTQMTKHIRVRASGGRSSASELGQFSPIFVWLLRD 216

Query: 216 FYLDLVEDNRKITPRDYLEIALRPVQGSGRDIAAKNEIRDSIRALFPDRECFTLVRPLSN 275
           FYLDLVEDN++ITPRDYLE+ALRPVQGSG+DIAAKNEIRDSIRALFPDRECF LVRPL+N
Sbjct: 217 FYLDLVEDNKRITPRDYLELALRPVQGSGKDIAAKNEIRDSIRALFPDRECFPLVRPLNN 276

Query: 276 ENELQRLDQISLDRLRPEFRAGLDALTKFVFERTRPKQVGATVLTGPVLIGITESYLDAI 335
           EN+LQR+DQISLD+LRPEFRAGLDALTKFVFERTRPKQVGATV+TGP+L+GITESYL+A+
Sbjct: 277 ENDLQRMDQISLDKLRPEFRAGLDALTKFVFERTRPKQVGATVMTGPILVGITESYLEAL 336

Query: 336 NNGAVPTISSSWQSVEEAECRRAYDSATETYMSTFDRSKPPEEVALGEAHEAAVQKALAV 395
           NNGAVPTISSSWQSVEEAECRRAYD+ATE YMS+FDRSKPPEEV L E+H+ AVQK+LA 
Sbjct: 337 NNGAVPTISSSWQSVEEAECRRAYDTATEIYMSSFDRSKPPEEVFLRESHDEAVQKSLAA 396

Query: 396 YNAGAVGVGLARKKYEGLLQKFFRKAFEDHKKNVYMEADIRCSSAIQSMERKLRAACHSS 455
           +NA AVG+G ARKKYEGLLQKFFR+A ED+K+N +MEAD+RCS+AIQ+ME++LRAACH+S
Sbjct: 397 FNAAAVGIGSARKKYEGLLQKFFRRALEDYKRNAFMEADLRCSNAIQNMEKRLRAACHAS 456

Query: 456 DASIDNVVKVLDGLISEYETSCHGPGKWQKLATFLQQSSEGPILDLVKRLIDQIGSERSS 515
           DA+IDN+VKVLDGL+SEYETSCHGPGKWQKLA FLQQS EG ILDL KRL D+IGSE+SS
Sbjct: 457 DANIDNIVKVLDGLLSEYETSCHGPGKWQKLAMFLQQSLEGSILDLAKRLNDKIGSEKSS 516

Query: 516 LMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENIS 575
           LML+  S+ED M LL KQLE SE+ KSEY+KRYD+AIN+KKKLADDY  RIN+LQ    S
Sbjct: 517 LMLRCHSMEDKMALLHKQLEASEKDKSEYMKRYDEAINEKKKLADDYMRRINDLQSNRGS 576

Query: 576 LREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAA 635
           L E+ SSL K ++S K E S+WKRK+DQVL+KQKA E+Q  SEI +LKSRS+A+EARLAA
Sbjct: 577 LDERCSSLVKALESAKQETSNWKRKHDQVLSKQKADEEQAASEIAILKSRSSASEARLAA 636

Query: 636 AREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLA 695
           A EQ  SA+E+  EWKRKY +AVRE KAALEKAA VQERT+KE Q RED LREEFSS L 
Sbjct: 637 AHEQTRSAEEDAAEWKRKYDIAVRETKAALEKAANVQERTNKETQLREDALREEFSSHLV 696

Query: 696 EKEEEMKEKATKIEHAEQCLTTLRLELKVS 725
            KE+E+KEK  +IE+AEQCLT L LELK +
Sbjct: 697 VKEDEIKEKNRRIEYAEQCLTALNLELKAA 726

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255536707|ref|XP_002509420.1| interferon-induced guanylate-binding protein, putative [Ricinus communis] gi|223549319|gb|EEF50807.1| interferon-induced guanylate-binding protein, putative [Ricinus communis]

 Score = 1164 bits (3010), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 560/724 (77%), Positives = 629/724 (86%), Gaps = 4/724 (0%)

Query: 2   MMKFFGKGKDSSPYNSLQPSTSPSSSRLPLNSTPVTGPARPIRLVYCDEKGKFRMDPEAV 61
           M K F +G+D++  +S  P TSP  S   ++ T  TGPARPIRLVYCDEKGKFRMDPEAV
Sbjct: 1   MFKIF-RGRDTASESS--PETSPYQSP-SMSQTSSTGPARPIRLVYCDEKGKFRMDPEAV 56

Query: 62  AALQLVKEPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRT 121
           A LQLVK PIGVVSVCGRARQGKSFILNQLLGRS+GFQVASTHRPCTKGLWLWSAPLKRT
Sbjct: 57  ATLQLVKGPIGVVSVCGRARQGKSFILNQLLGRSTGFQVASTHRPCTKGLWLWSAPLKRT 116

Query: 122 ALDGTEYNLLLLDSEGIDAYDQTGTYSTQIFSLAVLLSSMFIYNQMGGIDESAIDRLSLV 181
           ALDGTEYNLLLLD+EGIDAYDQTGTYSTQIF+LAVLLSSMFI+NQMGGIDES+ID+LSLV
Sbjct: 117 ALDGTEYNLLLLDTEGIDAYDQTGTYSTQIFTLAVLLSSMFIFNQMGGIDESSIDQLSLV 176

Query: 182 TQMTKHIRIRASGGKTTPSELGQFSPIFVWLLRDFYLDLVEDNRKITPRDYLEIALRPVQ 241
           TQ+TKHIR++ASGG+TT SELGQFSPIFVWLLRDFYLDLVEDN+KITPRDYLEIALRPVQ
Sbjct: 177 TQLTKHIRVKASGGRTTVSELGQFSPIFVWLLRDFYLDLVEDNKKITPRDYLEIALRPVQ 236

Query: 242 GSGRDIAAKNEIRDSIRALFPDRECFTLVRPLSNENELQRLDQISLDRLRPEFRAGLDAL 301
           GSG DIAAKN IRDSIRALFPDRECF LVRP+  E +LQR+ Q+SLD LRPEFR+GLDAL
Sbjct: 237 GSGGDIAAKNAIRDSIRALFPDRECFALVRPVPEERDLQRMGQLSLDNLRPEFRSGLDAL 296

Query: 302 TKFVFERTRPKQVGATVLTGPVLIGITESYLDAINNGAVPTISSSWQSVEEAECRRAYDS 361
           TKFVFERTRPKQVGAT++TGPVL+GITESYL+A+NNGAVPTI SSWQSVEEAECR+AYD 
Sbjct: 297 TKFVFERTRPKQVGATIMTGPVLVGITESYLEALNNGAVPTICSSWQSVEEAECRKAYDI 356

Query: 362 ATETYMSTFDRSKPPEEVALGEAHEAAVQKALAVYNAGAVGVGLARKKYEGLLQKFFRKA 421
           A E Y STF+RSK PEEVAL EAHE AV+K+L  +NA AVG+G  RKKYEGLL K  +KA
Sbjct: 357 AMEVYRSTFNRSKLPEEVALREAHEEAVRKSLDAFNASAVGIGETRKKYEGLLHKELKKA 416

Query: 422 FEDHKKNVYMEADIRCSSAIQSMERKLRAACHSSDASIDNVVKVLDGLISEYETSCHGPG 481
           FED+K+  +MEAD+RCS+AIQ MERKLR ACHSSDA++DN+VK+LDG +S+YETSCHGPG
Sbjct: 417 FEDYKRITFMEADLRCSNAIQKMERKLRTACHSSDANVDNIVKLLDGFLSDYETSCHGPG 476

Query: 482 KWQKLATFLQQSSEGPILDLVKRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYK 541
           KWQKLA FLQQS EGPI DL KRL DQIGSE+SSLMLK RSIED M LL KQLE SE++K
Sbjct: 477 KWQKLAIFLQQSLEGPICDLAKRLNDQIGSEKSSLMLKCRSIEDKMTLLNKQLEASEKHK 536

Query: 542 SEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKY 601
           SEY++RY++AIN+KKKLADDY  RI+++Q     L E+ SSL K ++S K E+SDWKRK+
Sbjct: 537 SEYMQRYNEAINEKKKLADDYMKRISDMQSSRSLLDERCSSLVKALESAKQEMSDWKRKH 596

Query: 602 DQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREA 661
           DQ+L+KQKA EDQ  SEI VLKSRS+A EARLAAA EQ  SAQEE  EWKRKY + VRE 
Sbjct: 597 DQLLSKQKADEDQTSSEIAVLKSRSSATEARLAAAHEQTKSAQEEAAEWKRKYDITVRET 656

Query: 662 KAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLE 721
           KAALEKAAIVQERT KE Q RED LREEF S LAEKE E+KEK  +IEHAEQCLTTL LE
Sbjct: 657 KAALEKAAIVQERTGKETQLREDALREEFYSQLAEKEREIKEKNGRIEHAEQCLTTLNLE 716

Query: 722 LKVS 725
           LK +
Sbjct: 717 LKAA 720

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356548658|ref|XP_003542717.1| PREDICTED: uncharacterized protein LOC100808644 [Glycine max]

 Score = 1142 bits (2953), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 559/731 (76%), Positives = 638/731 (87%), Gaps = 1/731 (0%)

Query: 2   MMKFFGKGKDSSPYNSLQPS-TSPSSSRLPLNSTPVTGPARPIRLVYCDEKGKFRMDPEA 60
           M+K+F +G+DS   ++  PS  + + S    +++PVTGPARPIRLVYCDEKGKFRMDPEA
Sbjct: 1   MLKYFNRGRDSPAADASPPSPAAATPSYSSSSASPVTGPARPIRLVYCDEKGKFRMDPEA 60

Query: 61  VAALQLVKEPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKR 120
           VA LQLVKEPIGVVSVCGRARQGKSFILNQLLG+SSGFQVASTHRPCTKGLWLWSAPLK+
Sbjct: 61  VATLQLVKEPIGVVSVCGRARQGKSFILNQLLGKSSGFQVASTHRPCTKGLWLWSAPLKK 120

Query: 121 TALDGTEYNLLLLDSEGIDAYDQTGTYSTQIFSLAVLLSSMFIYNQMGGIDESAIDRLSL 180
           TALDGTEY+LLLLDSEGIDAYDQTGTYSTQIFSLAVLLSSMFIYNQMGGIDE+++DRLSL
Sbjct: 121 TALDGTEYSLLLLDSEGIDAYDQTGTYSTQIFSLAVLLSSMFIYNQMGGIDEASLDRLSL 180

Query: 181 VTQMTKHIRIRASGGKTTPSELGQFSPIFVWLLRDFYLDLVEDNRKITPRDYLEIALRPV 240
           VTQMTKHIR+RASGGKT+ SELGQFSPIFVWLLRDFYLDL EDNRKITPRDYLEIALRPV
Sbjct: 181 VTQMTKHIRVRASGGKTSASELGQFSPIFVWLLRDFYLDLTEDNRKITPRDYLEIALRPV 240

Query: 241 QGSGRDIAAKNEIRDSIRALFPDRECFTLVRPLSNENELQRLDQISLDRLRPEFRAGLDA 300
           QGSG+DI AKNEIRDSIRALFPDRECFTLVRPL+NEN+LQRLDQIS+D+LR  FR GLD+
Sbjct: 241 QGSGKDIKAKNEIRDSIRALFPDRECFTLVRPLNNENDLQRLDQISMDKLRTGFREGLDS 300

Query: 301 LTKFVFERTRPKQVGATVLTGPVLIGITESYLDAINNGAVPTISSSWQSVEEAECRRAYD 360
           LTKFVFERTRPKQVGAT++TGPVL+GITESYL A+N GAVPTISSSWQSVEEAEC RAYD
Sbjct: 301 LTKFVFERTRPKQVGATMMTGPVLVGITESYLKALNEGAVPTISSSWQSVEEAECHRAYD 360

Query: 361 SATETYMSTFDRSKPPEEVALGEAHEAAVQKALAVYNAGAVGVGLARKKYEGLLQKFFRK 420
           SAT+ YMS+FDRS PPEEVAL EAHE A QK++A +NA A+GVG ARK YEGLL KFF+K
Sbjct: 361 SATDVYMSSFDRSTPPEEVALREAHEQAKQKSMAAFNAIAIGVGSARKTYEGLLLKFFKK 420

Query: 421 AFEDHKKNVYMEADIRCSSAIQSMERKLRAACHSSDASIDNVVKVLDGLISEYETSCHGP 480
           AFED++K+ +MEAD++CS+AIQSME++LRAAC++SDA IDNV KVLD L+SEYE +  GP
Sbjct: 421 AFEDYRKDAFMEADLQCSNAIQSMEKRLRAACNASDAKIDNVAKVLDALLSEYEKTIQGP 480

Query: 481 GKWQKLATFLQQSSEGPILDLVKRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERY 540
           GKWQ+LA FLQQS EGP+LDLVKRLI  I SE+ S  L+YRSIE+ + LL K+LE +E  
Sbjct: 481 GKWQRLAVFLQQSFEGPVLDLVKRLIATIESEKRSHALQYRSIEEKVDLLTKRLEATEGE 540

Query: 541 KSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRK 600
           KS Y+KRY+DAINDKKKL D+Y +RI +LQ    SL E+ SSL KT+DS K +  DWKRK
Sbjct: 541 KSNYIKRYEDAINDKKKLMDEYKNRITDLQANRRSLDERYSSLLKTLDSTKQDSMDWKRK 600

Query: 601 YDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVRE 660
           Y+QVL++QKA EDQ  SEI  LKSRS AAEARLAAA+EQA SAQEE EEWKRKY +A RE
Sbjct: 601 YEQVLSRQKAEEDQASSEIAALKSRSGAAEARLAAAKEQAQSAQEEAEEWKRKYDIARRE 660

Query: 661 AKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRL 720
           A++AL+KAA VQERT+K+ Q RED LREEFS TLAEKE+E+KEK  KIEHAE+CLTTL L
Sbjct: 661 AQSALQKAANVQERTNKQTQLREDALREEFSGTLAEKEDEIKEKTAKIEHAEKCLTTLNL 720

Query: 721 ELKVSFFDIYS 731
           ELK +   I S
Sbjct: 721 ELKAAESKIRS 731

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521418|ref|XP_003529353.1| PREDICTED: uncharacterized protein LOC100796442 [Glycine max]

 Score = 1136 bits (2938), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 558/731 (76%), Positives = 634/731 (86%), Gaps = 1/731 (0%)

Query: 2   MMKFFGKGKDSSPYNSLQPSTSPSSSRLPLNSTP-VTGPARPIRLVYCDEKGKFRMDPEA 60
           M+K+F +G+DS   ++  PS +P++    L S   VTGPARPIRLVYCDEKGKF+MDPEA
Sbjct: 1   MLKYFNRGRDSPAADASPPSHAPATPSSSLPSASPVTGPARPIRLVYCDEKGKFQMDPEA 60

Query: 61  VAALQLVKEPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKR 120
           VA LQLVKEPIGVVSVCGRARQGKSFILNQLLG+SSGFQVASTHRPCTKGLWLWSAPLK+
Sbjct: 61  VATLQLVKEPIGVVSVCGRARQGKSFILNQLLGKSSGFQVASTHRPCTKGLWLWSAPLKK 120

Query: 121 TALDGTEYNLLLLDSEGIDAYDQTGTYSTQIFSLAVLLSSMFIYNQMGGIDESAIDRLSL 180
           TALDGTEY+LLLLDSEGIDAYDQTGTYSTQIFSLAVLLSSMFIYNQMGGIDE+++DRLSL
Sbjct: 121 TALDGTEYSLLLLDSEGIDAYDQTGTYSTQIFSLAVLLSSMFIYNQMGGIDEASLDRLSL 180

Query: 181 VTQMTKHIRIRASGGKTTPSELGQFSPIFVWLLRDFYLDLVEDNRKITPRDYLEIALRPV 240
           VTQMTKHIR+RASGGKT+ SELGQFSPIFVWLLRDFYLDL EDNRKITPRDYLEIALRPV
Sbjct: 181 VTQMTKHIRVRASGGKTSASELGQFSPIFVWLLRDFYLDLTEDNRKITPRDYLEIALRPV 240

Query: 241 QGSGRDIAAKNEIRDSIRALFPDRECFTLVRPLSNENELQRLDQISLDRLRPEFRAGLDA 300
           QGSG+DI AKNEIRDSIRALFPDRECFTLVRPL+NEN+LQRLDQIS+D+LR  FR GLDA
Sbjct: 241 QGSGKDIKAKNEIRDSIRALFPDRECFTLVRPLNNENDLQRLDQISMDKLRTGFREGLDA 300

Query: 301 LTKFVFERTRPKQVGATVLTGPVLIGITESYLDAINNGAVPTISSSWQSVEEAECRRAYD 360
           LTKFVFERTRPKQVGAT++TGPVL+GITESYL A+N GAVPTISSSWQSVEEAEC RAYD
Sbjct: 301 LTKFVFERTRPKQVGATMMTGPVLVGITESYLKALNEGAVPTISSSWQSVEEAECHRAYD 360

Query: 361 SATETYMSTFDRSKPPEEVALGEAHEAAVQKALAVYNAGAVGVGLARKKYEGLLQKFFRK 420
           SAT+ YMS+FDRS PPEEVAL EAHE A QK++A +NA A+GVG ARK YE LL KFF+K
Sbjct: 361 SATDVYMSSFDRSSPPEEVALREAHEQAKQKSMAAFNAIAIGVGSARKTYEALLLKFFKK 420

Query: 421 AFEDHKKNVYMEADIRCSSAIQSMERKLRAACHSSDASIDNVVKVLDGLISEYETSCHGP 480
           AFED++K+ +MEAD++CS+AIQSME++LRAAC++SDA IDNV KVLD L+SEYE +  GP
Sbjct: 421 AFEDYRKDAFMEADLQCSNAIQSMEKRLRAACNASDAKIDNVAKVLDALLSEYEKTIQGP 480

Query: 481 GKWQKLATFLQQSSEGPILDLVKRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERY 540
           GKWQKLA FLQQS EGP+LDLVKRLI  + SE+ S  L+ RSIE+ + LL K+LE +E  
Sbjct: 481 GKWQKLAVFLQQSFEGPVLDLVKRLIATVESEKRSHALQCRSIEEKVDLLTKRLEATEGE 540

Query: 541 KSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRK 600
           KS Y+KRY+DAINDKKKL D+Y + I +LQ    SL E+ SSL KT+DS K E  DWKRK
Sbjct: 541 KSNYIKRYEDAINDKKKLMDEYKNCITDLQANRRSLDERYSSLLKTLDSTKQESMDWKRK 600

Query: 601 YDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVRE 660
           Y+QVL++QKA EDQ  SEI  LKSRS AAEARLAAA+EQA SAQEE EEWKRKY +A RE
Sbjct: 601 YEQVLSRQKAEEDQASSEIAALKSRSGAAEARLAAAKEQAQSAQEEAEEWKRKYDIARRE 660

Query: 661 AKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRL 720
           A++AL+KAA VQERT+K+ Q RED LREEFS TLAEKE+E+KEK  KIEHAE+CLTTL L
Sbjct: 661 AQSALQKAANVQERTNKQTQLREDALREEFSGTLAEKEDEIKEKTAKIEHAEKCLTTLNL 720

Query: 721 ELKVSFFDIYS 731
           ELK +   I S
Sbjct: 721 ELKAAESKIRS 731

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145358912|ref|NP_199419.2| Guanylate-binding protein [Arabidopsis thaliana] gi|332007951|gb|AED95334.1| Guanylate-binding protein [Arabidopsis thaliana]

 Score = 1134 bits (2933), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 539/724 (74%), Positives = 624/724 (86%)

Query: 2   MMKFFGKGKDSSPYNSLQPSTSPSSSRLPLNSTPVTGPARPIRLVYCDEKGKFRMDPEAV 61
           M  FFG+G   SP +S  PS     S  P +S+ VTGP RPIRLVYCDEKGKFRMDPEAV
Sbjct: 1   MRSFFGRGGKDSPADSASPSPRSYPSTSPASSSAVTGPPRPIRLVYCDEKGKFRMDPEAV 60

Query: 62  AALQLVKEPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRT 121
           A LQLVKEPIGVVSVCGRARQGKSFILNQLLGRS+GFQVASTH+PCTKGLWLWS+P+KRT
Sbjct: 61  ATLQLVKEPIGVVSVCGRARQGKSFILNQLLGRSNGFQVASTHKPCTKGLWLWSSPIKRT 120

Query: 122 ALDGTEYNLLLLDSEGIDAYDQTGTYSTQIFSLAVLLSSMFIYNQMGGIDESAIDRLSLV 181
           ALDGTEYNLLLLDSEGIDAYDQTGTYSTQIFSLAVLLSSMF+YNQMGGIDE+++DRLSLV
Sbjct: 121 ALDGTEYNLLLLDSEGIDAYDQTGTYSTQIFSLAVLLSSMFVYNQMGGIDEASLDRLSLV 180

Query: 182 TQMTKHIRIRASGGKTTPSELGQFSPIFVWLLRDFYLDLVEDNRKITPRDYLEIALRPVQ 241
           TQMTKHIR++ASGG ++ SELGQFSPIFVWLLRDFYLDLVEDNRKI+PRDYLEIALRPVQ
Sbjct: 181 TQMTKHIRVKASGGTSSRSELGQFSPIFVWLLRDFYLDLVEDNRKISPRDYLEIALRPVQ 240

Query: 242 GSGRDIAAKNEIRDSIRALFPDRECFTLVRPLSNENELQRLDQISLDRLRPEFRAGLDAL 301
           GSG DI AKNEIRDSIRALFPDRECFTLVRPL+NE +LQRLDQISL++LRPEF AGLDA 
Sbjct: 241 GSGGDIGAKNEIRDSIRALFPDRECFTLVRPLNNEKDLQRLDQISLEKLRPEFGAGLDAF 300

Query: 302 TKFVFERTRPKQVGATVLTGPVLIGITESYLDAINNGAVPTISSSWQSVEEAECRRAYDS 361
           TKFVFE+TRPKQ+G TV+TGP+L+GIT+SYLDA+NNGAVPTI+SSWQSVEE ECRRAYDS
Sbjct: 301 TKFVFEKTRPKQLGGTVMTGPILVGITQSYLDALNNGAVPTITSSWQSVEETECRRAYDS 360

Query: 362 ATETYMSTFDRSKPPEEVALGEAHEAAVQKALAVYNAGAVGVGLARKKYEGLLQKFFRKA 421
             E YM+ FD+SK PEE AL E HE AV+KALA++N+ AVG G ARKK+E LL K  +K 
Sbjct: 361 GVEAYMAAFDQSKAPEEGALREEHEEAVRKALAIFNSNAVGNGSARKKFEDLLHKDLKKK 420

Query: 422 FEDHKKNVYMEADIRCSSAIQSMERKLRAACHSSDASIDNVVKVLDGLISEYETSCHGPG 481
           FED+KKN +MEAD+RC+S IQ ME++LRAACH+S+A++DNVVKVL+  ++EYE SCHGPG
Sbjct: 421 FEDYKKNAFMEADLRCTSTIQRMEKQLRAACHASNANMDNVVKVLEARLAEYEASCHGPG 480

Query: 482 KWQKLATFLQQSSEGPILDLVKRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYK 541
           KWQKL+ FLQQS EGPI DL KRLID I  E++SL +K+RS+ED MK LK+QL+DSERYK
Sbjct: 481 KWQKLSVFLQQSLEGPIYDLTKRLIDSIAIEKNSLAMKFRSVEDAMKHLKQQLDDSERYK 540

Query: 542 SEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKY 601
            EY KRYD++ NDKKKL D Y  RI  LQGEN SL E+ S+L KTV+S K EI +W R Y
Sbjct: 541 LEYQKRYDESNNDKKKLEDIYRERITKLQGENSSLNERCSTLVKTVESKKEEIKEWIRNY 600

Query: 602 DQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREA 661
           DQ++ KQKA+++Q+ SE+EVL++RST +EAR+AAAREQA SA EE +EWKRKY  AV EA
Sbjct: 601 DQIVLKQKAVQEQLSSEMEVLRTRSTTSEARVAAAREQAKSAAEETKEWKRKYDYAVGEA 660

Query: 662 KAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLE 721
           ++AL+KAA VQER+ KE Q RED LREEFS TLA K+EE+ EKATK+E AEQ LT LR +
Sbjct: 661 RSALQKAASVQERSGKETQLREDALREEFSITLANKDEEITEKATKLEKAEQSLTVLRSD 720

Query: 722 LKVS 725
           LKV+
Sbjct: 721 LKVA 724

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449433796|ref|XP_004134683.1| PREDICTED: uncharacterized protein LOC101220489 [Cucumis sativus]

 Score = 1132 bits (2928), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 563/725 (77%), Positives = 644/725 (88%), Gaps = 7/725 (0%)

Query: 1   MMMKFFGKGKDSSPYNSLQPSTSPSSSRLPLNSTPVTGPARPIRLVYCDEKGKFRMDPEA 60
           M+  F GKG      NS   ST P S+    +S+  TGPARPIRLVYCDEKGKFRMDPEA
Sbjct: 1   MISYFRGKG------NSADVST-PQSASSLSSSSTGTGPARPIRLVYCDEKGKFRMDPEA 53

Query: 61  VAALQLVKEPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKR 120
           VA LQLVKEPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWS PLKR
Sbjct: 54  VATLQLVKEPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSTPLKR 113

Query: 121 TALDGTEYNLLLLDSEGIDAYDQTGTYSTQIFSLAVLLSSMFIYNQMGGIDESAIDRLSL 180
           TALDGTEYNLLLLDSEGIDAYDQTGTYSTQIFSLAVLLSSMF+YNQMGGIDE+A+DRLSL
Sbjct: 114 TALDGTEYNLLLLDSEGIDAYDQTGTYSTQIFSLAVLLSSMFVYNQMGGIDEAALDRLSL 173

Query: 181 VTQMTKHIRIRASGGKTTPSELGQFSPIFVWLLRDFYLDLVEDNRKITPRDYLEIALRPV 240
           VTQMTKHIR+RA+GG+TT +ELGQFSPIFVWLLRDFYLDLVEDNR+ITPRDYLE+ALRPV
Sbjct: 174 VTQMTKHIRVRAAGGRTTSAELGQFSPIFVWLLRDFYLDLVEDNRRITPRDYLELALRPV 233

Query: 241 QGSGRDIAAKNEIRDSIRALFPDRECFTLVRPLSNENELQRLDQISLDRLRPEFRAGLDA 300
           QGSG+DIAAKNEIRDSIRALFPDR+CFTLVRPL+NEN+LQRLDQISLD+LRPEFR+GLDA
Sbjct: 234 QGSGKDIAAKNEIRDSIRALFPDRDCFTLVRPLNNENDLQRLDQISLDKLRPEFRSGLDA 293

Query: 301 LTKFVFERTRPKQVGATVLTGPVLIGITESYLDAINNGAVPTISSSWQSVEEAECRRAYD 360
            TKFVFERTRPKQVGATV+TGP+L+GITESYL+A+N+GAVPTI+SSWQSVEEAECRRAYD
Sbjct: 294 FTKFVFERTRPKQVGATVMTGPILVGITESYLNALNHGAVPTITSSWQSVEEAECRRAYD 353

Query: 361 SATETYMSTFDRSKPPEEVALGEAHEAAVQKALAVYNAGAVGVGLARKKYEGLLQKFFRK 420
            A E YMSTFDRSKPPEE AL EAHE AVQK+LA +N+ AVGVG  RKKYEGLL+KF+RK
Sbjct: 354 HAAEVYMSTFDRSKPPEEAALREAHETAVQKSLAAFNSSAVGVGPVRKKYEGLLEKFYRK 413

Query: 421 AFEDHKKNVYMEADIRCSSAIQSMERKLRAACHSSDASIDNVVKVLDGLISEYETSCHGP 480
           AFED+K+N Y EAD++C++AIQSME++LR ACH+SDA+I+NVVKVL  L+SEYE S HGP
Sbjct: 414 AFEDYKRNAYTEADLQCTNAIQSMEKRLRVACHASDANINNVVKVLGALLSEYEASSHGP 473

Query: 481 GKWQKLATFLQQSSEGPILDLVKRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERY 540
           GKWQKLATFL QS EGP+LDL+KRLIDQ+GSE++SL LK RSIED +  LKKQLE SE+Y
Sbjct: 474 GKWQKLATFLHQSLEGPVLDLIKRLIDQVGSEKNSLALKCRSIEDQLNFLKKQLEASEKY 533

Query: 541 KSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRK 600
           KS+YLKRY+DAINDKKK+ADDY +RI NLQG+  SL E+ SSL KTV+  K E  DWKRK
Sbjct: 534 KSDYLKRYEDAINDKKKVADDYMNRITNLQGDCSSLDERCSSLKKTVEQAKQESLDWKRK 593

Query: 601 YDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVRE 660
           Y+ VL+K KA EDQ  S+I +LKSRS+AAEARLAAAREQ+ SAQEE EEWKRK+ +A+R+
Sbjct: 594 YETVLSKLKAEEDQANSDIAILKSRSSAAEARLAAAREQSQSAQEEAEEWKRKFEIALRD 653

Query: 661 AKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRL 720
            KAALEKAA+ +ERT+K+ + RED LR+EFS+ L+ KE+E+K+KATKI+  E+ LTTL L
Sbjct: 654 TKAALEKAALAEERTNKQTRLREDDLRKEFSNILSVKEDELKDKATKIKQVEEHLTTLGL 713

Query: 721 ELKVS 725
           ELKV+
Sbjct: 714 ELKVA 718

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356546617|ref|XP_003541721.1| PREDICTED: uncharacterized protein LOC100776402 [Glycine max]

 Score = 1113 bits (2880), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 555/726 (76%), Positives = 633/726 (87%), Gaps = 11/726 (1%)

Query: 2   MMKFFG--KGKDSSPYNSLQPSTSPSSSRLPLNSTPVTGPARPIRLVYCDEKGKFRMDPE 59
           M+K+F   +G+D++   S  P+ +PSSS       PVTGPARPIRLVYCDE G+FRMDPE
Sbjct: 1   MIKYFNFNRGRDNAADAS--PAATPSSS-------PVTGPARPIRLVYCDENGRFRMDPE 51

Query: 60  AVAALQLVKEPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLK 119
           AVA LQLVKEP+GVVSVCGRARQGKSFILNQLLGR+SGFQVASTHRPCTKGLWLWSAPLK
Sbjct: 52  AVATLQLVKEPVGVVSVCGRARQGKSFILNQLLGRTSGFQVASTHRPCTKGLWLWSAPLK 111

Query: 120 RTALDGTEYNLLLLDSEGIDAYDQTGTYSTQIFSLAVLLSSMFIYNQMGGIDESAIDRLS 179
           RTALDGTEYNLLLLDSEGIDAYDQTGTYSTQIFSLAVLLSSMFIYNQMGGIDE+A+DRLS
Sbjct: 112 RTALDGTEYNLLLLDSEGIDAYDQTGTYSTQIFSLAVLLSSMFIYNQMGGIDEAALDRLS 171

Query: 180 LVTQMTKHIRIRASGGKTTPSELGQFSPIFVWLLRDFYLDLVEDNRKITPRDYLEIALRP 239
           LVTQMTKHIR+RASGG+++ SELGQFSPIFVWLLRDFYLDLVEDNRKITPRDYLEIALRP
Sbjct: 172 LVTQMTKHIRVRASGGRSSTSELGQFSPIFVWLLRDFYLDLVEDNRKITPRDYLEIALRP 231

Query: 240 VQGSGRDIAAKNEIRDSIRALFPDRECFTLVRPLSNENELQRLDQISLDRLRPEFRAGLD 299
            QGSG+DI AKNEIRDSIRALFPDRECFTLVRPL++EN+LQRLDQISL++LRPEFR+ LD
Sbjct: 232 FQGSGKDITAKNEIRDSIRALFPDRECFTLVRPLNDENDLQRLDQISLEKLRPEFRSSLD 291

Query: 300 ALTKFVFERTRPKQVGATVLTGPVLIGITESYLDAINNGAVPTISSSWQSVEEAECRRAY 359
            LTKFVFER RPKQVGAT++TGPVLIGITESYLDA+N+GAVPTISSSWQSVEEAECR+AY
Sbjct: 292 TLTKFVFERARPKQVGATMMTGPVLIGITESYLDALNHGAVPTISSSWQSVEEAECRKAY 351

Query: 360 DSATETYMSTFDRSKPPEEVALGEAHEAAVQKALAVYNAGAVGVGLARKKYEGLLQKFFR 419
           DSA E YMS+FD +KPPEE AL EAHE AV+ ++A + A AVGVG  R KYEG+LQKF +
Sbjct: 352 DSAAEIYMSSFDCTKPPEEAALREAHEKAVRISMAAFTASAVGVGSVRTKYEGMLQKFLK 411

Query: 420 KAFEDHKKNVYMEADIRCSSAIQSMERKLRAACHSSDASIDNVVKVLDGLISEYETSCHG 479
           KAFED+K+N YMEAD++CS+AIQSME++LRAAC++SDA IDNV KVLD L+ EYE S   
Sbjct: 412 KAFEDYKRNAYMEADLQCSNAIQSMEKRLRAACNASDAKIDNVAKVLDALLCEYEKSIQA 471

Query: 480 PGKWQKLATFLQQSSEGPILDLVKRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSER 539
           P KWQKLA FLQQS EGP+LDL +RLI+++ S++SSL L YR  ED + LL K+LE SE 
Sbjct: 472 PEKWQKLAVFLQQSFEGPVLDLTRRLINKVESDKSSLSLNYRLTEDKIALLNKRLETSES 531

Query: 540 YKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKR 599
            KSEY+KRY+DAINDKK+L D+Y +RI  L+    SL E+ SSLSKT+DS K E  DWKR
Sbjct: 532 EKSEYIKRYEDAINDKKQLTDEYMNRITELRASCRSLDERYSSLSKTLDSTKQESMDWKR 591

Query: 600 KYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVR 659
           KY+QVL++ K+ EDQ  SEI  LKS S+AAEARLAAAREQ+ SAQEE EEWKRKY +AVR
Sbjct: 592 KYEQVLSRHKSEEDQASSEIAALKSHSSAAEARLAAAREQSQSAQEEAEEWKRKYEIAVR 651

Query: 660 EAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLR 719
           EAKAALEKAAIVQE T+K+ Q RED LREEFSSTLAEKE+++KEK  KIEHAEQCLTTL+
Sbjct: 652 EAKAALEKAAIVQEYTNKQSQLREDALREEFSSTLAEKEDKIKEKTAKIEHAEQCLTTLK 711

Query: 720 LELKVS 725
           LELK +
Sbjct: 712 LELKAA 717

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9757727|dbj|BAB08252.1| unnamed protein product [Arabidopsis thaliana]

 Score = 1077 bits (2784), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 518/724 (71%), Positives = 602/724 (83%), Gaps = 22/724 (3%)

Query: 2   MMKFFGKGKDSSPYNSLQPSTSPSSSRLPLNSTPVTGPARPIRLVYCDEKGKFRMDPEAV 61
           M  FFG+G   SP +S  PS     S  P +S+ VTGP RPIRLVYCDEKGKFRMDPEAV
Sbjct: 1   MRSFFGRGGKDSPADSASPSPRSYPSTSPASSSAVTGPPRPIRLVYCDEKGKFRMDPEAV 60

Query: 62  AALQLVKEPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRT 121
           A LQLVKEPIGVVSVCGRARQGKSFILNQLLGRS+GFQVASTH+PCTKGLWLWS+P+KRT
Sbjct: 61  ATLQLVKEPIGVVSVCGRARQGKSFILNQLLGRSNGFQVASTHKPCTKGLWLWSSPIKRT 120

Query: 122 ALDGTEYNLLLLDSEGIDAYDQTGTYSTQIFSLAVLLSSMFIYNQMGGIDESAIDRLSLV 181
           ALDGTEYNLLLLDSEGIDAYDQT                      MGGIDE+++DRLSLV
Sbjct: 121 ALDGTEYNLLLLDSEGIDAYDQT----------------------MGGIDEASLDRLSLV 158

Query: 182 TQMTKHIRIRASGGKTTPSELGQFSPIFVWLLRDFYLDLVEDNRKITPRDYLEIALRPVQ 241
           TQMTKHIR++ASGG ++ SELGQFSPIFVWLLRDFYLDLVEDNRKI+PRDYLEIALRPVQ
Sbjct: 159 TQMTKHIRVKASGGTSSRSELGQFSPIFVWLLRDFYLDLVEDNRKISPRDYLEIALRPVQ 218

Query: 242 GSGRDIAAKNEIRDSIRALFPDRECFTLVRPLSNENELQRLDQISLDRLRPEFRAGLDAL 301
           GSG DI AKNEIRDSIRALFPDRECFTLVRPL+NE +LQRLDQISL++LRPEF AGLDA 
Sbjct: 219 GSGGDIGAKNEIRDSIRALFPDRECFTLVRPLNNEKDLQRLDQISLEKLRPEFGAGLDAF 278

Query: 302 TKFVFERTRPKQVGATVLTGPVLIGITESYLDAINNGAVPTISSSWQSVEEAECRRAYDS 361
           TKFVFE+TRPKQ+G TV+TGP+L+GIT+SYLDA+NNGAVPTI+SSWQSVEE ECRRAYDS
Sbjct: 279 TKFVFEKTRPKQLGGTVMTGPILVGITQSYLDALNNGAVPTITSSWQSVEETECRRAYDS 338

Query: 362 ATETYMSTFDRSKPPEEVALGEAHEAAVQKALAVYNAGAVGVGLARKKYEGLLQKFFRKA 421
             E YM+ FD+SK PEE AL E HE AV+KALA++N+ AVG G ARKK+E LL K  +K 
Sbjct: 339 GVEAYMAAFDQSKAPEEGALREEHEEAVRKALAIFNSNAVGNGSARKKFEDLLHKDLKKK 398

Query: 422 FEDHKKNVYMEADIRCSSAIQSMERKLRAACHSSDASIDNVVKVLDGLISEYETSCHGPG 481
           FED+KKN +MEAD+RC+S IQ ME++LRAACH+S+A++DNVVKVL+  ++EYE SCHGPG
Sbjct: 399 FEDYKKNAFMEADLRCTSTIQRMEKQLRAACHASNANMDNVVKVLEARLAEYEASCHGPG 458

Query: 482 KWQKLATFLQQSSEGPILDLVKRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYK 541
           KWQKL+ FLQQS EGPI DL KRLID I  E++SL +K+RS+ED MK LK+QL+DSERYK
Sbjct: 459 KWQKLSVFLQQSLEGPIYDLTKRLIDSIAIEKNSLAMKFRSVEDAMKHLKQQLDDSERYK 518

Query: 542 SEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKY 601
            EY KRYD++ NDKKKL D Y  RI  LQGEN SL E+ S+L KTV+S K EI +W R Y
Sbjct: 519 LEYQKRYDESNNDKKKLEDIYRERITKLQGENSSLNERCSTLVKTVESKKEEIKEWIRNY 578

Query: 602 DQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREA 661
           DQ++ KQKA+++Q+ SE+EVL++RST +EAR+AAAREQA SA EE +EWKRKY  AV EA
Sbjct: 579 DQIVLKQKAVQEQLSSEMEVLRTRSTTSEARVAAAREQAKSAAEETKEWKRKYDYAVGEA 638

Query: 662 KAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLE 721
           ++AL+KAA VQER+ KE Q RED LREEFS TLA K+EE+ EKATK+E AEQ LT LR +
Sbjct: 639 RSALQKAASVQERSGKETQLREDALREEFSITLANKDEEITEKATKLEKAEQSLTVLRSD 698

Query: 722 LKVS 725
           LKV+
Sbjct: 699 LKVA 702

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222632561|gb|EEE64693.1| hypothetical protein OsJ_19548 [Oryza sativa Japonica Group]

 Score =  989 bits (2557), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 467/678 (68%), Positives = 567/678 (83%), Gaps = 2/678 (0%)

Query: 46  VYCDEKGKFRMDPEAVAALQLVKEPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHR 105
           VYCDEKGKF MDPEAVAALQLVK P+GVVSVCGRARQGKSF+LNQLLGRSSGFQVA THR
Sbjct: 39  VYCDEKGKFVMDPEAVAALQLVKGPVGVVSVCGRARQGKSFVLNQLLGRSSGFQVAPTHR 98

Query: 106 PCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYDQTGTYSTQIFSLAVLLSSMFIYN 165
           PCTKGLW+WSAPLKRT LDGTEYNL+LLD+EGIDAYDQTGTYS QIFSLAVLLSSMFIYN
Sbjct: 99  PCTKGLWMWSAPLKRTGLDGTEYNLVLLDTEGIDAYDQTGTYSIQIFSLAVLLSSMFIYN 158

Query: 166 QMGGIDESAIDRLSLVTQMTKHIRIRASGGKTTPSELGQFSPIFVWLLRDFYLDLVEDNR 225
           QMGGIDE+A+DRLSLVT+MTKHIR+RASGG++T SELG FSP+FVWLLRDFYLDL EDNR
Sbjct: 159 QMGGIDEAALDRLSLVTEMTKHIRVRASGGRSTASELGHFSPVFVWLLRDFYLDLTEDNR 218

Query: 226 KITPRDYLEIALRPVQGSGRDIAAKNEIRDSIRALFPDRECFTLVRPLSNENELQRLDQI 285
           KITPRDYLE+ALRPVQG GRD+++KN IR+SIRALFPDREC TLVRP++NE +LQRLDQ+
Sbjct: 219 KITPRDYLELALRPVQGGGRDVSSKNAIRESIRALFPDRECITLVRPVNNEKDLQRLDQL 278

Query: 286 SLDRLRPEFRAGLDALTKFVFERTRPKQVGATVLTGPVLIGITESYLDAINNGAVPTISS 345
            L+  RPEFR+GLDALTKFVF+RTRPKQ+GA+ LTGPVL G+T+S+LDAIN GAVPTISS
Sbjct: 279 PLNNFRPEFRSGLDALTKFVFDRTRPKQLGASTLTGPVLSGLTQSFLDAINTGAVPTISS 338

Query: 346 SWQSVEEAECRRAYDSATETYMSTFDRSKPPEEVALGEAHEAAVQKALAVYNAGAVGVGL 405
           SWQSVEEAECRRAYDSA +TY S+FDR KP EE A+ EAHE A++KA++V+NA AVG GL
Sbjct: 339 SWQSVEEAECRRAYDSAIDTYNSSFDRRKPAEEDAMREAHEDALKKAVSVFNASAVGAGL 398

Query: 406 ARKKYEGLLQKFFRKAFEDHKKNVYMEADIRCSSAIQSMERKLRAACHSSDASIDNVVKV 465
           AR K+E LLQ   +KAFED+K+N ++EAD++CS+ IQSME K+R AC+  DA +D++V++
Sbjct: 399 ARSKFEKLLQTSLKKAFEDYKRNTFLEADLQCSNRIQSMESKIRTACNRPDAKLDDIVRL 458

Query: 466 LDGLISEYETSCHGPGKWQKLATFLQQSSEGPILDLVKRLIDQIGSERSSLMLKYRSIED 525
           +DGL++EYE+  +GPGKW+KLATFLQQ   GP+L L +R I+ I +ER+SL LK  S +D
Sbjct: 459 IDGLLTEYESKSYGPGKWKKLATFLQQCLAGPVLYLFRRQIEHIDAERNSLRLKCSSNDD 518

Query: 526 NMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSK 585
            + LL+KQLE SE +++EYL+RY+++INDK+K++ DY+ RI  LQ ++  L E+  SLS 
Sbjct: 519 KLALLRKQLEASEGHRAEYLRRYEESINDKQKISRDYSGRIAELQTKSSKLEERCVSLSS 578

Query: 586 TVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQE 645
            +D+ K E  DWK KYD  L +QKA E ++ S+I  L+SR   +E RL+A REQA SAQE
Sbjct: 579 ALDNAKRESVDWKNKYDHNLLQQKADESKLKSQIASLESRVNISEGRLSAVREQAESAQE 638

Query: 646 EVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKA 705
           E  EWKRKY VAV EAK AL++AA+ QERT+K++Q+RED LR E +S L+EKEEE+    
Sbjct: 639 EASEWKRKYEVAVSEAKTALQRAAVAQERTNKKVQEREDALRAELASQLSEKEEEIARLN 698

Query: 706 TKIEHAEQCLTTL--RLE 721
           TKI   E   T L  RLE
Sbjct: 699 TKINQTEIHATNLISRLE 716

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242091367|ref|XP_002441516.1| hypothetical protein SORBIDRAFT_09g028440 [Sorghum bicolor] gi|241946801|gb|EES19946.1| hypothetical protein SORBIDRAFT_09g028440 [Sorghum bicolor]

 Score =  976 bits (2524), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 456/704 (64%), Positives = 577/704 (81%), Gaps = 2/704 (0%)

Query: 20  PSTSPSSSRLPLNSTPVTGPARPIRLVYCDEKGKFRMDPEAVAALQLVKEPIGVVSVCGR 79
           PS   ++  +  +   V GPARP+RL YCDEKGKF MDPEAVAALQLVK P+GVVSVCGR
Sbjct: 14  PSAGDAAPAMSGDGGAVAGPARPLRLAYCDEKGKFVMDPEAVAALQLVKGPVGVVSVCGR 73

Query: 80  ARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139
           ARQGKSFILNQLLGRSSGFQVASTHRPCTKGLW+WS PLKRT LDGTEY+L+LLD+EGID
Sbjct: 74  ARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWIWSTPLKRTGLDGTEYSLVLLDTEGID 133

Query: 140 AYDQTGTYSTQIFSLAVLLSSMFIYNQMGGIDESAIDRLSLVTQMTKHIRIRASGGKTTP 199
           AYDQTGTYS QIFSLAVLLSSMFIYNQMGGIDE+A+DRLSLVT+MTKHIR+RASGG++T 
Sbjct: 134 AYDQTGTYSIQIFSLAVLLSSMFIYNQMGGIDEAALDRLSLVTEMTKHIRVRASGGRSTA 193

Query: 200 SELGQFSPIFVWLLRDFYLDLVEDNRKITPRDYLEIALRPVQGSGRDIAAKNEIRDSIRA 259
           SELGQFSP+FVWLLRDFYLDL EDNRKITPRDYLE+ALRPVQG GRD++AKN IR+SIRA
Sbjct: 194 SELGQFSPVFVWLLRDFYLDLTEDNRKITPRDYLELALRPVQGGGRDVSAKNAIRESIRA 253

Query: 260 LFPDRECFTLVRPLSNENELQRLDQISLDRLRPEFRAGLDALTKFVFERTRPKQVGATVL 319
           LFPDRECF LVRP+++E +LQRLDQ+ L   RP+FR+GLDA TKFV +RTRPKQ+GA+ +
Sbjct: 254 LFPDRECFPLVRPVNDEKDLQRLDQLPLSNFRPQFRSGLDAFTKFVLDRTRPKQLGASTM 313

Query: 320 TGPVLIGITESYLDAINNGAVPTISSSWQSVEEAECRRAYDSATETYMSTFDRSKPPEEV 379
           TGP+L G+T+S+LDAIN+GAVPTISSSWQSVEEAEC+RA+DSA +TY S+FD  K  EE 
Sbjct: 314 TGPILAGLTQSFLDAINSGAVPTISSSWQSVEEAECQRAFDSAVQTYNSSFDHKKHIEED 373

Query: 380 ALGEAHEAAVQKALAVYNAGAVGVGLARKKYEGLLQKFFRKAFEDHKKNVYMEADIRCSS 439
           +L EAHE A++KA++ +NA AVG G+AR K+E LL    +KAFED+K+N ++EAD++CS+
Sbjct: 374 SLREAHEDAMRKAISAFNASAVGTGVARTKFEKLLHSSLKKAFEDYKRNAFLEADLQCSN 433

Query: 440 AIQSMERKLRAACHSSDASIDNVVKVLDGLISEYETSCHGPGKWQKLATFLQQSSEGPIL 499
            +Q ME KLRA C+  DA +D+VV +LDGL++EYE++ +GP KW++LATFLQQ   GP+L
Sbjct: 434 KVQKMESKLRALCNRPDAKLDDVVTLLDGLLTEYESTAYGPVKWKRLATFLQQCLAGPVL 493

Query: 500 DLVKRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLA 559
           DL +R ++ I +ER++L LK  S +D + LL+KQLE SE +++EY++RY++ +NDK+K++
Sbjct: 494 DLFRRQLEHIDAERNALRLKCNSSDDKLALLRKQLEASEGHRAEYVRRYEEVLNDKQKIS 553

Query: 560 DDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEI 619
            DY+ RI  LQ ++  L E+  SLS ++++ K E +DWK KYD  + +QKA E ++ S+I
Sbjct: 554 KDYSIRITELQTKSSKLEERCLSLSSSLETAKRECNDWKSKYDHGILQQKADESKLKSQI 613

Query: 620 EVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEM 679
             L+SR + +E RL+A REQA SAQEE  EWKRKY VAV EAK AL++AA+ QERT+K++
Sbjct: 614 ASLESRVSISEGRLSATREQADSAQEEASEWKRKYEVAVSEAKTALQRAAVAQERTNKKV 673

Query: 680 QQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTL--RLE 721
           Q+RED LR E ++ L+EKEEE+     K+   E   T+L  RLE
Sbjct: 674 QEREDALRAELANQLSEKEEEISRLHAKLSQTEIHATSLISRLE 717

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	736
TAIR|locus:2161358	1082	AT5G46070 [Arabidopsis thalian	0.983	0.669	0.704	1.3e-274
UNIPROTKB|F1N9J3	623	GBP7 "Uncharacterized protein"	0.684	0.808	0.297	5.4e-59
RGD|1561523	558	Mpa2l "macrophage activation 2	0.483	0.637	0.351	1.1e-58
ZFIN|ZDB-GENE-070705-98	645	si:ch211-209n20.1 "si:ch211-20	0.748	0.854	0.291	4e-58
ZFIN|ZDB-GENE-070912-618	630	gbp2 "guanylate binding protei	0.766	0.895	0.270	2.4e-53
UNIPROTKB|F1N1I1	629	LOC781225 "Uncharacterized pro	0.744	0.871	0.287	3.8e-53
ZFIN|ZDB-GENE-041210-233	618	si:dkey-61p9.3 "si:dkey-61p9.3	0.524	0.624	0.340	8e-53
UNIPROTKB|F6PPP4	579	Bt.37579 "Uncharacterized prot	0.740	0.941	0.281	1.4e-52
ZFIN|ZDB-GENE-060531-46	618	gbp4 "guanylate binding protei	0.524	0.624	0.338	1.7e-52
UNIPROTKB|Q9H0R5	595	GBP3 "Guanylate-binding protei	0.729	0.902	0.283	2.7e-52

TAIR|locus:2161358 AT5G46070 [Arabidopsis thaliana (taxid:3702)]

 Score = 2640 (934.4 bits), Expect = 1.3e-274, P = 1.3e-274
 Identities = 510/724 (70%), Positives = 587/724 (81%)

Query:     2 MMKFFGKGKDSSPYXXXXXXXXXXXXXXXXXXXXVTGPARPIRLVYCDEKGKFRMDPEAV 61
             M  FFG+G   SP                     VTGP RPIRLVYCDEKGKFRMDPEAV
Sbjct:     1 MRSFFGRGGKDSPADSASPSPRSYPSTSPASSSAVTGPPRPIRLVYCDEKGKFRMDPEAV 60

Query:    62 AALQLVKEPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRT 121
             A LQLVKEPIGVVSVCGRARQGKSFILNQLLGRS+GFQVASTH+PCTKGLWLWS+P+KRT
Sbjct:    61 ATLQLVKEPIGVVSVCGRARQGKSFILNQLLGRSNGFQVASTHKPCTKGLWLWSSPIKRT 120

Query:   122 ALDGTEYNLLLLDSEGIDAYDQTGTYSTQIFSLAVLLSSMFIYNQMGGIDESAIDRLSLV 181
             ALDGTEYNLLLLDSEGIDAYDQTGTYSTQIFSLAVLLSSMF+YNQMGGIDE+++DRLSLV
Sbjct:   121 ALDGTEYNLLLLDSEGIDAYDQTGTYSTQIFSLAVLLSSMFVYNQMGGIDEASLDRLSLV 180

Query:   182 TQMTKHIRIRASGGKTTPSELGQFSPIFVWLLRDFYLDLVEDNRKITPRDYLEIALRPVQ 241
             TQMTKHIR++ASGG ++ SELGQFSPIFVWLLRDFYLDLVEDNRKI+PRDYLEIALRPVQ
Sbjct:   181 TQMTKHIRVKASGGTSSRSELGQFSPIFVWLLRDFYLDLVEDNRKISPRDYLEIALRPVQ 240

Query:   242 GSGRDIAAKNEIRDSIRALFPDRECFTLVRPLSNENELQRLDQISLDRLRPEFRAGLDAL 301
             GSG DI AKNEIRDSIRALFPDRECFTLVRPL+NE +LQRLDQISL++LRPEF AGLDA 
Sbjct:   241 GSGGDIGAKNEIRDSIRALFPDRECFTLVRPLNNEKDLQRLDQISLEKLRPEFGAGLDAF 300

Query:   302 TKFVFERTRPKQVGATVLTGPVLIGITESYLDAINNGAVPTISSSWQSVEEAECRRAYDS 361
             TKFVFE+TRPKQ+G TV+TGP+L+GIT+SYLDA+NNGAVPTI+SSWQSVEE ECRRAYDS
Sbjct:   301 TKFVFEKTRPKQLGGTVMTGPILVGITQSYLDALNNGAVPTITSSWQSVEETECRRAYDS 360

Query:   362 ATETYMSTFDRSKPPEEVALGEAHEAAVQKALAVYNAGAVGVGLARKKYEGLLQKFFRKA 421
               E YM+ FD+SK PEE AL E HE AV+KALA++N+ AVG G ARKK+E LL K  +K 
Sbjct:   361 GVEAYMAAFDQSKAPEEGALREEHEEAVRKALAIFNSNAVGNGSARKKFEDLLHKDLKKK 420

Query:   422 FEDHKKNVYMEADIRCSSAIQSMERKLRAACHSSDASIDNVVKVLDGLISEYETSCHGPG 481
             FED+KKN +MEAD+RC+S IQ ME++LRAACH+S+A++DNVVKVL+  ++EYE SCHGPG
Sbjct:   421 FEDYKKNAFMEADLRCTSTIQRMEKQLRAACHASNANMDNVVKVLEARLAEYEASCHGPG 480

Query:   482 KWQKLATFLQQSSEGPILDLVKRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYK 541
             KWQKL+ FLQQS EGPI DL KRLID I  E++SL +K+RS+ED MK LK+QL+DSERYK
Sbjct:   481 KWQKLSVFLQQSLEGPIYDLTKRLIDSIAIEKNSLAMKFRSVEDAMKHLKQQLDDSERYK 540

Query:   542 SEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKY 601
              EY KRYD++ NDKKKL D Y  RI  LQGEN SL E+ S+L KTV+S K EI +W R Y
Sbjct:   541 LEYQKRYDESNNDKKKLEDIYRERITKLQGENSSLNERCSTLVKTVESKKEEIKEWIRNY 600

Query:   602 DQVLTKQKAMEDQVCSEIEVLKSRSTXXXXXXXXXXXXXXXXXXXVEEWKRKYGVAVREA 661
             DQ++ KQKA+++Q+ SE+EVL++RST                    +EWKRKY  AV EA
Sbjct:   601 DQIVLKQKAVQEQLSSEMEVLRTRSTTSEARVAAAREQAKSAAEETKEWKRKYDYAVGEA 660

Query:   662 KAALEKAAIVQERTSKEMQQREDVLREEFSSTLAXXXXXXXXXXXXXXHAEQCLTTLRLE 721
             ++AL+KAA VQER+ KE Q RED LREEFS TLA               AEQ LT LR +
Sbjct:   661 RSALQKAASVQERSGKETQLREDALREEFSITLANKDEEITEKATKLEKAEQSLTVLRSD 720

Query:   722 LKVS 725
             LKV+
Sbjct:   721 LKVA 724

GO:0003924 "GTPase activity" evidence=IEA;ISS

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006955 "immune response" evidence=ISS

GO:0009507 "chloroplast" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

UNIPROTKB|F1N9J3 GBP7 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 570 (205.7 bits), Expect = 5.4e-59, Sum P(2) = 5.4e-59
 Identities = 159/535 (29%), Positives = 270/535 (50%)

Query:    39 PARPIRLVYCDEKGKFRMDPEAVAALQLVKEPIGVVSVCGRARQGKSFILNQLLGRSSGF 98
             PA P+ LV   +  K  ++PEA+A L+ + +P+ VV++ G  R GKSF++N+L  + +GF
Sbjct:    20 PA-PLCLVENSDGNKLSVNPEALAVLRGITQPVVVVAIAGPYRTGKSFLMNRLAKQRTGF 78

Query:    99 QVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI-DAYDQTGTYSTQIFSLAVL 157
              +  T R  TKG+W+W  P    A  G    L+LLD+EG+ D      +    IF+LA+L
Sbjct:    79 PLGPTVRAETKGIWMWCLPHPSQA--GVA--LVLLDTEGLGDPNKGDNSNDAWIFTLALL 134

Query:   158 LSSMFIYNQMGGIDESAIDRLSLVTQMTKHIRIRASGGKTTPSELGQFSPIFVWLLRDFY 217
              SS  +YN MG ID+  +D+L LVT++T HIR+R        +E  +  P FVW +RDF 
Sbjct:   135 FSSTLVYNSMGTIDQQGLDQLRLVTELTNHIRVRVDDPDPA-AEFSRVFPSFVWTVRDFT 193

Query:   218 LDLVEDNRKITPRDYLEIALRPVQGSGRDIAAKNEIRDSIRALFPDRECFTLVRPLSNEN 277
             L L E  R +T  +YLE ALR   G+GR +   NE+R  +RA F  R+ F L RP ++ N
Sbjct:   194 LQLREGKRLLTEDEYLEDALRLKPGNGRMVQEHNEMRRCLRAFFTHRKLFVLERPTADAN 253

Query:   278 ELQRLDQISLDRLRPEFRAGLDALTKFVFERTRPKQV-GATVLTGPVLIGITESYLDAIN 336
              L RL+++  D L+P FR   DA  + ++E+   K + G   +TG +L  + E Y+D I 
Sbjct:   254 -LARLEEVREDELQPRFRQQADAFCQHIWEKAPVKMLPGGRQVTGTMLASLVEKYVDTIV 312

Query:   337 NGAVPTISSSWQSVEEAECRRAYDSATETYMSTFDRSK--PPEEVA-LGEAHEAAVQKAL 393
              G VP + S+  ++       A   A   Y    ++    P +  A L + H    ++A+
Sbjct:   313 KGKVPCVESAVTALARTRNTEAVAEAVAEYRKGMEQDLVLPTDSRAVLVDVHRRWERRAV 372

Query:   394 AVYNAGAVGVGLARKKYEGLLQKFFRKAFEDHKKNVYMEADIRCSSAI----QSMERKLR 449
              ++ + A       + Y+  L +    A E+  +     ++ +C   +    Q++ER+L+
Sbjct:   373 TLFLSHAFADN--ERTYQCQLMRELEAAKEEFCRRNEEASEQQCQKVLRELWQNVERRLQ 430

Query:   450 AACHSSDASIDNVVKVLDGLISEYETSCHGPGKWQK----LATFLQQSSE-GPILDLVKR 504
                +++          L  ++ +Y+     PGK  K    L  FL++       L     
Sbjct:   431 CGDYAAPGGAQLFQDDLGYVLEKYKW---WPGKGVKADAVLEVFLREREPLAQALHATDA 487

Query:   505 LIDQIGSERSSLMLKYRSI-EDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKL 558
              +  +  +R +   K  ++ E  +  LK+Q    +R   E+ ++ +  + ++++L
Sbjct:   488 QLVMMERQREAAAAKEAAVREAEVACLKEQ----QRSLEEHCRQLEQRLLEEQRL 538

GO:0003924 "GTPase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

RGD|1561523 Mpa2l "macrophage activation 2 like" [Rattus norvegicus (taxid:10116)]

 Score = 536 (193.7 bits), Expect = 1.1e-58, Sum P(3) = 1.1e-58
 Identities = 130/370 (35%), Positives = 207/370 (55%)

Query:    36 VTGPAR-PIRLVYCDEKGKFRMDPEAVAALQLVKEPIGVVSVCGRARQGKSFILNQLLGR 94
             VT P   PI LV  +   +  ++ +A+  L  + +P+ VV++ G  R GKS+++N L G+
Sbjct:     1 VTQPQMAPICLVE-NHNERLSVNQKAIEILDKISQPVVVVAIVGLYRTGKSYLMNCLAGQ 59

Query:    95 SSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI-DAYDQTGTYSTQIFS 153
             + GF + ST +  TKG+W+W  P         ++ L+LLD+EG+ D         + IF+
Sbjct:    60 NHGFPLGSTVQSQTKGIWMWCVPHPTKP----KHTLVLLDTEGLGDVEKGDPKNDSWIFA 115

Query:   154 LAVLLSSMFIYNQMGGIDESAIDRLSLVTQMTKHIRIRAS---GGKTTPSELGQFSPIFV 210
             LAVLLSS F+YN +  I+  A+++L  VT++TK IR R+S    G    +E   F P FV
Sbjct:   116 LAVLLSSTFVYNSLSTINHQALEQLYYVTELTKLIRARSSPNPDGIKNSTEFVSFFPDFV 175

Query:   211 WLLRDFYLDLVEDNRKITPRDYLEIALRPVQGSGRDIAAKNEIRDSIRALFPDRECFTLV 270
             W +RDF L+L  + + IT  +YLE AL+ + G+   I A N  R+ IR  FP+R+CF   
Sbjct:   176 WTVRDFMLELTLNGKNITSDEYLENALKLIPGNSPRIQASNLPRECIRQFFPNRKCFVFD 235

Query:   271 RPLSNENELQRLDQISLDRLRPEFRAGLDALTKFVFERTRPKQVGATV-LTGPVLIGITE 329
             RP  ++  LQ+L+ IS D+L P FR G  A   ++F   + K +   + +TG  L  +  
Sbjct:   236 RPTHDKELLQKLETISEDQLDPNFREGTKAFVSYIFTYAKMKTLREGIKVTGNRLGTLVT 295

Query:   330 SYLDAINNGAVPTISSSWQSVEEAECRRAYDSATETYMSTF-DRSKPPEEVA--LGEAHE 386
             +Y+DAIN+GAVP +  +  ++ + E   A   A + Y      R + P +    L + H 
Sbjct:   296 TYVDAINSGAVPCLDDAVTTLAQRENSVAVQKAVDHYSEQMAQRLRLPTDTLQELLDEHT 355

Query:   387 AAVQKALAVY 396
             A  ++A++V+
Sbjct:   356 ACEKEAISVF 365

GO:0003924 "GTPase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

ZFIN|ZDB-GENE-070705-98 si:ch211-209n20.1 "si:ch211-209n20.1" [Danio rerio (taxid:7955)]

 Score = 597 (215.2 bits), Expect = 4.0e-58, P = 4.0e-58
 Identities = 169/580 (29%), Positives = 290/580 (50%)

Query:    41 RPIRLVYCDEKGKFRMDPEAVAALQLVKEPIGVVSVCGRARQGKSFILNQLLGRSSGFQV 100
             +P+ L+  D  GK  + P A+  LQ +++P+ VV+V G  R GKS+++N L G+ +GF +
Sbjct:     3 KPVCLINTDSDGKLCVQPAALQVLQQIQQPVVVVAVVGLYRTGKSYLMNHLAGKQTGFAL 62

Query:   101 ASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI-DAYDQTGTYSTQIFSLAVLLS 159
               T    TKG+W+W  P       GT   L+LLD+EG+ D       + T IF LAVLLS
Sbjct:    63 GGTIESKTKGIWMWCVP--HPTKTGT--TLVLLDTEGLGDVEKGDSKHDTNIFCLAVLLS 118

Query:   160 SMFIYNQMGGIDESAIDRLSLVTQMTKHIRIRASGGKTTPS-ELGQFSPIFVWLLRDFYL 218
             S  +YN  G ID  AI+ L  VT++T+ I++++S      S E  +F P F+W +RDF L
Sbjct:   119 STLVYNSSGTIDNRAIEELQYVTELTECIKVKSSDEDVDDSTEFVKFFPSFIWSVRDFTL 178

Query:   219 DLVEDNRKITPRDYLEIALRPVQGSGRDIAAKNEIRDSIRALFPDRECFTLVRPLSNENE 278
             +   D +  T  +YLE AL+   G+ + I + N  R+ I+  FP R CFT   P + E +
Sbjct:   179 ERKIDGKDATEDEYLEFALKLKPGTSKKITSFNLPRECIQKFFPTRTCFTFPFPTAPE-K 237

Query:   279 LQRLDQISLDRLRPEFRAGLDALTKFVFERTRPKQV--GATVLTGPVLIGITESYLDAIN 336
             +  L+ +S   L  EF        KFVF+++  K++  G TV TG VL  +T+ Y++ I+
Sbjct:   238 MSTLESLSPADLSTEFLEVTKRFCKFVFDKSEVKRLKDGHTV-TGRVLGNLTKMYVNTIS 296

Query:   337 NGAVPTISSSWQSVEEAECRRAYDSATETYMSTFDRSK---PPEEVALGEAHEAAVQKAL 393
             +GAVP + ++  ++ + E   A     E Y    ++ K   P E   +   H+    KA 
Sbjct:   297 SGAVPCLENAVIAMAQIENVAATQEGLEVYQRGMEKVKCSFPLELEQVSSEHQRLSSKAT 356

Query:   394 AVYNAGAVGV--GLARKKYEGLLQKFFRKAF-EDHKKNVYMEADIRCSSAIQSMERKLRA 450
               + A +     G   K  EG + K F +   ++ + +V    D+  S +  +M  K + 
Sbjct:   357 QAFMARSFKDTDGKHLKVLEGKINKLFNEYLCQNEQASVKKCEDLLLSLSA-TMTEKHKQ 415

Query:   451 ACHSSDASIDNVVKVLDGLISEYETSCHGPGKWQK-LATFLQQSS--EGPILDLVKRLID 507
               ++     D   K L+ ++  Y++      + +  L  FL+Q S     IL   K+L +
Sbjct:   416 GFYAKPGGYDVFCKDLEDIVKTYKSQAKNEVQAEMVLDKFLKQKSVDSKAILQADKKLTE 475

Query:   508 Q---IGSERSSLMLKYRSI---EDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADD 561
             +   I  E    +L  + I   E+  + L +++E  ++   E +K+  + + ++ K   +
Sbjct:   476 KEKKIKEEMEKAVLLQQEIKAKEETQRQLMEKMEAEKKSNEERIKQMKEKMEEEMKQQRE 535

Query:   562 YTSR-INNLQGENISLREKSSSLSKTVDSLKNEISDWKRK 600
                R +++   E  +L +K     +  D +  E+ ++KR+
Sbjct:   536 EAQRALDSKLREQAALLDKG--FQEKADMMSKEMKEFKRQ 573

GO:0003924 "GTPase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

ZFIN|ZDB-GENE-070912-618 gbp2 "guanylate binding protein 2" [Danio rerio (taxid:7955)]

 Score = 552 (199.4 bits), Expect = 2.4e-53, P = 2.4e-53
 Identities = 159/588 (27%), Positives = 283/588 (48%)

Query:    42 PIRLVYCDEKGKFRMDPEAVAALQLVKEPIGVVSVCGRARQGKSFILNQLLGRSSGFQVA 101
             P+ L+  DE GK  +  EA   L  + EP+ VVSV G  R GKS+++N+L G+ SGF + 
Sbjct:    11 PVCLIENDEFGKLCVKKEAKDILDEINEPVVVVSVVGLYRTGKSYLMNRLAGKQSGFALG 70

Query:   102 STHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYDQTGT-YSTQIFSLAVLLSS 160
             ST    TKG+W+W  P       G  + L+LLD+EG+   D+    + T IF LAVLLSS
Sbjct:    71 STIESKTKGIWMWCVP--HPYKKG--HTLVLLDTEGLGDVDKGDERHDTWIFCLAVLLSS 126

Query:   161 MFIYNQMGGIDESAIDRLSL--VTQMTKHIRIRASGGKTTPS-ELGQFS---PIFVWLLR 214
               +YN +G ID  A+++L    VT++T++IR++A G +     E  +F    P FVW +R
Sbjct:   127 ALVYNSLGVIDNMALEKLQYPYVTELTENIRVKAEGNEVEDEDESAEFMRVFPSFVWAVR 186

Query:   215 DFYLDLVEDNRKITPRDYLEIALRPVQGSGRDIAAKNEIRDSIRALFPDRECFTLVRPLS 274
             DF L+L   ++ IT  +YLE AL+P +G+   IA  N  R  +R  F  R+CF   RP S
Sbjct:   187 DFTLELKMGDKPITSDEYLESALKPKKGNSPQIAQYNLPRRCLREFFAPRKCFVFPRPAS 246

Query:   275 NENELQRLDQISLDRLRPEFRAGLDALTKFVFERTRPKQV-GATVLTGPVLIGITESYLD 333
              + +++R++ ++ + L  EF    +    +++  T PK V G   +TG  L  + E Y++
Sbjct:   247 TQ-DMKRMEDLTEEELDSEFLQQANTFCSYIYNSTEPKTVKGGRTITGTALGNLAEVYVE 305

Query:   334 AINNGAVPTISSSWQSVEEAECRRAYDSATETYMSTF-DRSK-PPEEVALGEAHEAAVQK 391
             AI +G VP + ++  S+ + +  RA + A + YM+     ++ P +   L   H  A +K
Sbjct:   306 AIRSGKVPCLENAVVSLAKIQNVRAVEQALQIYMTEMLSMAQFPLDPEELSSIHTLAEKK 365

Query:   392 ALAVY-NAG-AVGVGLARKKYEGLLQKFFRKAFEDHKKNVYMEADIRCSSAIQSMERKLR 449
             A+  + N   +    + +++  G +   ++   + + +   M+           +E  + 
Sbjct:   366 AIEEFINMSFSDNDQIYQQELMGKIHNEYQDLCQQNHQASLMQCQEVLEDVFDPLEMNIS 425

Query:   450 AACHSSDASIDNVVKVLDGLISEYETSCHGPGKWQK-LATFLQQSSE-GPILDLVKRLID 507
                +           +L  L S Y          ++ L  FL+   + G ++      + 
Sbjct:   426 NGSYLRPGGYREYRALLAQLTSSYRARTKSQIMSEEVLCMFLKGKEDVGNMILQADESLS 485

Query:   508 QIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRI- 566
                 E+   MLK   ++   + L++Q    E+   +  + + + +N      +    RI 
Sbjct:   486 AAEQEKEVQMLKNEILQQRQRGLEEQNRLQEQAFKDMERTHQEHVNQIVHQMEREQERIR 545

Query:   567 -NNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMED 613
              +N +     L+E+ + L +     + E S  +++ + + T     E+
Sbjct:   546 RDNERVLEAKLKEREALLKQ---GFEEEASRMQKEINSLKTDMSKQEE 590

GO:0003924 "GTPase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

UNIPROTKB|F1N1I1 LOC781225 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 550 (198.7 bits), Expect = 3.8e-53, P = 3.8e-53
 Identities = 168/584 (28%), Positives = 299/584 (51%)

Query:    42 PIRLVYCDEKGKFRMDPEAVAALQLVKEPIGVVSVCGRARQGKSFILNQLLGRSSGFQVA 101
             PI LV  ++  +  ++P A+  L+ + +P+ VV++ G  R GKS+++N+L G++ GF + 
Sbjct:    10 PICLVR-NQNNQLTVNPRALKILEQISQPVVVVAIAGLYRTGKSYLMNRLAGQNHGFHLG 68

Query:   102 STHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI-DAYDQTGTYSTQIFSLAVLLSS 160
             ST R  TKG+W+W  P          + L+LLD+EG+ D         + IF+LAVLLSS
Sbjct:    69 STVRSETKGIWMWYVPHPSKE----NHTLVLLDTEGLGDVEKGDSKNDSWIFALAVLLSS 124

Query:   161 MFIYNQMGGIDESAIDRLSLVTQMTKHIRIRASGGKTTP---SELGQFSPIFVWLLRDFY 217
              F+YN M  I+  A+++L  VT++T+ IR ++S         +E   F P F+W +RDF 
Sbjct:   125 TFVYNSMSTINHQALEQLHYVTELTELIRTKSSPSSNEEEGSAEFLSFFPDFIWTVRDFI 184

Query:   218 LDLVEDNRKITPRDYLEIALRPVQGSGRDIAAKNEIRDSIRALFPDRECFTLVRPLSNEN 277
             L+L  D   IT  +YLE AL+ + G    I   N  R+ IR  FP R+CF   RP ++  
Sbjct:   185 LELELDGYPITEDEYLENALKLIPGKDPKIQNSNMTRECIRKFFPKRKCFVFDRPTNDRK 244

Query:   278 ELQRLDQISLDRLRPEFRAGLDALTKFVFERTRPKQV--GATVLTGPVLIGITESYLDAI 335
              L R+ ++S ++L   F+   +    ++F   +PK +  G TV TG  L  + E+Y+DAI
Sbjct:   245 LLLRVMELSDNQLDVNFQKQSEDFCSYIFTHAKPKTLREGITV-TGGGLGTLVEAYVDAI 303

Query:   336 NNGAVPTISSSWQSVEEAECRRAYDSATETYMSTF-DRSKPPEEVA--LGEAHEAAVQKA 392
             N+G VP + ++  ++ E E   A   A + Y      R   P +    L E H A  ++A
Sbjct:   304 NSGGVPCLENAVITLAERENSAAVQKAADHYSEQMTQRLNLPTDTLQELLEVHAACEKEA 363

Query:   393 LAVYNAGAV--GVGLARKKYEGLLQKFFRKAF--EDHKKNV-YMEADIRCSSAIQSMERK 447
             +A++   +      + +KK   +++K  + +F  ++ + +V Y EA+++  S  +S+ + 
Sbjct:   364 IAIFMERSFKDDKRMFQKKLVDIMEKM-KDSFMIQNEEASVKYYEAELKQLS--ESLMKS 420

Query:   448 LRAACHSSDASIDNVVKVLDGLISEYE-TSCHGPGKWQKLATFLQQSS--EGPILDLVKR 504
             +              ++  +    +Y+     G    Q L +FLQ  +  E  IL   + 
Sbjct:   421 ISGGTFFVPGGHSLYLEARNKFEQDYKLVPRKGVKANQVLQSFLQSQAGVEEAILQADQA 480

Query:   505 LIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTS 564
             L D      ++   K  + +   +LL+++ ++ E+ K E  +R     + K+ LA     
Sbjct:   481 LTDA-DKAMAAECAKKDAAKRKQELLREK-QNEEKQKMEAQER-----SFKENLAQ-LQE 532

Query:   565 RINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQ 608
             +++  + EN+ LRE+ + L   +   K  +++  +K  +VL+K+
Sbjct:   533 KMDR-ERENL-LREQQTMLEHKLKMQKELLTEGFKKEAEVLSKE 574

GO:0005525 "GTP binding" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

ZFIN|ZDB-GENE-041210-233 si:dkey-61p9.3 "si:dkey-61p9.3" [Danio rerio (taxid:7955)]

 Score = 547 (197.6 bits), Expect = 8.0e-53, P = 8.0e-53
 Identities = 136/399 (34%), Positives = 208/399 (52%)

Query:    41 RPIRLVYCDEKGKFRMDPEAVAALQLVKEPIGVVSVCGRARQGKSFILNQLLGRSSGFQV 100
             +P+ L+     GK  +   A+  LQ +++P+ VV+V G  R GKSF++N+L G+ +GF +
Sbjct:     3 KPVCLIDTGSDGKLCVQQAALQVLQQIQQPVVVVAVVGPYRTGKSFLMNRLAGKRTGFAL 62

Query:   101 ASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI-DAYDQTGTYSTQIFSLAVLLS 159
             +S  +P T+G+W+W  P    A  GT   L+LLD+EG+ D         T IFSL VLLS
Sbjct:    63 SSNIKPKTEGIWMWCVPHPTKA--GT--TLVLLDTEGLGDVEKGDSKRDTYIFSLTVLLS 118

Query:   160 SMFIYNQMGGIDESAIDRLSLVTQMTKHIRIRASGGKTTPSELGQFSPIFVWLLRDFYLD 219
             S  +YN  G ID  AI++L  VT++ +HI++         +E  +F P F+W LRDF L+
Sbjct:   119 STLVYNSWGTIDNLAIEQLQYVTELIEHIKVTPDEDADDCAEFAKFFPHFIWCLRDFTLE 178

Query:   220 LVEDNRKITPRDYLEIALRPVQGSGRDIAAKNEIRDSIRALFPDRECFTLVRPLSNENEL 279
             L  D + +T  +YLE AL+   G+ + +   N  R+ IR  FP R CFT   P + E   
Sbjct:   179 LKLDGKDLTEDEYLEFALKLRPGTSKKVMMYNLPRECIRKFFPCRTCFTFPSPTTPEKR- 237

Query:   280 QRLDQISLDRLRPEFRAGLDALTKFVFERTRPKQV-GATVLTGPVLIGITESYLDAINNG 338
               L+ +S     PEF        KFVF+R+  KQ+ G   +TG VL  +T+ Y+D I++G
Sbjct:   238 SILESLSPAEFSPEFLEVTKRFCKFVFDRSEVKQLKGGHTVTGRVLGNLTKMYVDTISSG 297

Query:   339 AVPTISSSWQSVEEAECRRAYDSATETYMSTFDRSK---PPEEVALGEAHEAAVQKALAV 395
             AV  + ++  ++ + E   A     E Y    ++ K   P E   +   H+   + A   
Sbjct:   298 AVFCLENAVIAMAQIENEAATQEGLEVYQRGMEKLKSSFPLELEQVSSEHQRLSRMATQA 357

Query:   396 YNAGAVGV--GLARKKYEGLLQKFFRKAFEDHKKNVYME 432
             + A +     G   K  EG + K F  A+    K V +E
Sbjct:   358 FMARSFKDTDGKHLKALEGEIGKLF-DAYRSQNKQVGLE 395

GO:0003924 "GTPase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0042981 "regulation of apoptotic process" evidence=IEA

UNIPROTKB|F6PPP4 Bt.37579 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 520 (188.1 bits), Expect = 1.4e-52, Sum P(2) = 1.4e-52
 Identities = 163/579 (28%), Positives = 284/579 (49%)

Query:    42 PIRLVYCDEKGKFRMDPEAVAALQLVKEPIGVVSVCGRARQGKSFILNQLLGRSSGFQVA 101
             PI LV  +   +  ++P A+  L+ + +P+ VV++ G  R GKS+++N+L G++ GF + 
Sbjct:     3 PICLVE-NRNNQLLVNPRALKILEQISQPVVVVAIAGLYRTGKSYLMNRLAGQNHGFCLG 61

Query:   102 STHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI-DAYDQTGTYSTQIFSLAVLLSS 160
             ST +  TKG+W+W  P          + L+LLD+EG+ D         + IF+LAVLLSS
Sbjct:    62 STVQSETKGIWMWCVPHPSKE----NHTLVLLDTEGLGDVEKGDSKNDSWIFALAVLLSS 117

Query:   161 MFIYNQMGGIDESAIDRLSLVTQMTKHIRIRAS--GGKTTPS-ELGQFSPIFVWLLRDFY 217
               IYN MG I+  A+++L  VT++T+ IRI++S        S E  +F P FVW +RDF 
Sbjct:   118 TCIYNSMGTINHQALEQLHYVTELTELIRIKSSPISDDVEDSVEFVRFFPDFVWTVRDFM 177

Query:   218 LDLVEDNRKITPRDYLEIALRPVQGSGRDIAAKNEIRDSIRALFPDRECFTLVRPLSNEN 277
             L+L  +   IT  +YLE AL+ + G+   I   N  R+ I+  FP R+CF   RP SN  
Sbjct:   178 LELKFNGNPITEDEYLENALKLIPGANHQIQNSNLPRECIKKFFPRRKCFVFDRPASNRK 237

Query:   278 ELQRLDQISLDRLRPEFRAGLDALTKFVFERTRPKQVGATVLTGPVLIGITESYLDAINN 337
             +L  L++I  + L   F+        +++   + K      +TG  L  + E+Y++AIN+
Sbjct:   238 QLLHLEEIPDNELDVNFKKQSKVFCSYIYTHAKTKTKEGITITGKRLGTLVEAYVNAINS 297

Query:   338 GAVPTISSSWQSVEEAECRRAYDSATETYMSTFDR--SKPPEEVA-LGEAHEAAVQKALA 394
             G+VP + ++  ++ + E   A   A + Y     +  S P + +  L E H A  ++A+A
Sbjct:   298 GSVPCLENAVTTLAQLENSAAVQKAADHYSEQMTKRLSLPTDTLQELLEVHAACEKEAIA 357

Query:   395 VYNAGAVGVGLARKKYEGLLQKFFRKAFEDHKKNVYMEADIR-CSSAIQSMERKLRAACH 453
             V+   +      +K ++  L    +K  ED       EA ++ C + ++ +   L  +  
Sbjct:   358 VFMKHSFKD--EKKDFQKKLLVMIKKKKEDFLLQDE-EASVKYCQAELKKLSDPLMKSIS 414

Query:   454 SSDASIDNVVKVLDGLISEYETSCHG-PGKWQK----LATFLQQSS--EGPILDLVKRLI 506
                 S     +      + +E +    P K  K    L +FLQ  +  +  IL   + L 
Sbjct:   415 EGTFSFPGGHRRYLEARNRFEENYKLIPRKGVKANHVLQSFLQSQAGVQAAILQADQALA 474

Query:   507 DQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRI 566
             D +         K ++ E    LL ++L D  +      + + ++I    KL + +    
Sbjct:   475 D-VDKAMKEEYTKRQAAEMKKDLLIQKLNDKMQKMEAQGRSHKESI---AKLKEKFM--- 527

Query:   567 NNLQGENISLREKSSSLSKTVDSLKNEIS-DWKRKYDQV 604
               L+ EN+ LRE+   L   +   +  ++ D+++K D++
Sbjct:   528 --LERENL-LREQEELLEYKLKVQRELLNVDFQKKSDEL 563

GO:0005525 "GTP binding" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

ZFIN|ZDB-GENE-060531-46 gbp4 "guanylate binding protein 4" [Danio rerio (taxid:7955)]

 Score = 544 (196.6 bits), Expect = 1.7e-52, P = 1.7e-52
 Identities = 135/399 (33%), Positives = 210/399 (52%)

Query:    41 RPIRLVYCDEKGKFRMDPEAVAALQLVKEPIGVVSVCGRARQGKSFILNQLLGRSSGFQV 100
             +P+ L+     GK  +   A+  LQ +++P+ VV+V G  R GKSF++N+L G+ +GF +
Sbjct:     3 KPVCLIDTGSDGKLCVQQAALQVLQQIQQPVVVVAVVGLYRTGKSFLMNRLAGKRTGFAL 62

Query:   101 ASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYDQTGTY-STQIFSLAVLLS 159
             +S  +P T+G+W+W  P    A  GT   L+LLD+EG++  ++  +   T IFSLAVLLS
Sbjct:    63 SSNIKPKTEGIWMWCMPHPTKA--GT--TLVLLDTEGLEDVEKGDSKRDTYIFSLAVLLS 118

Query:   160 SMFIYNQMGGIDESAIDRLSLVTQMTKHIRIRASGGKTTPSELGQFSPIFVWLLRDFYLD 219
             S  +YN  G ID  A++ L  VT++ +HI++         +   +F P F+W LRDF L+
Sbjct:   119 STLVYNSRGVIDNKAMEELQYVTELIEHIKVTPDEDADDCTAFAKFFPHFIWCLRDFTLE 178

Query:   220 LVEDNRKITPRDYLEIALRPVQGSGRDIAAKNEIRDSIRALFPDRECFTLVRPLSNENEL 279
             L  D + +T  +YLE AL+   G+ + +   N  R+ IR  FP R CFT   P + E   
Sbjct:   179 LKLDGKDLTEDEYLEFALKLRPGTSKKVMMYNLPRECIRKFFPCRTCFTFPSPTTPEKR- 237

Query:   280 QRLDQISLDRLRPEFRAGLDALTKFVFERTRPKQV-GATVLTGPVLIGITESYLDAINNG 338
               L+ +S   L PEF        KFVF+R+  KQ+ G   +TG VL  +T+ Y+D I++G
Sbjct:   238 SILESLSPAELDPEFLEVTKRFCKFVFDRSEVKQLKGGHTVTGRVLGNLTKMYVDTISSG 297

Query:   339 AVPTISSSWQSVEEAECRRAYDSATETYMSTFDRSK---PPEEVALGEAHEAAVQKALAV 395
             AV  + ++  ++ + E   A     E Y    ++ K   P E   +   H+     A   
Sbjct:   298 AVFCLENAVIAMAQIENEAATQEGLEVYQRGMEKLKSSFPLELEQVSSEHQRLSSMATQA 357

Query:   396 YNAGAVGV--GLARKKYEGLLQKFFRKAFEDHKKNVYME 432
             + A +     G   K  EG + K F  A+    K V +E
Sbjct:   358 FMARSFKDTDGKHLKALEGEMGKLF-DAYRSQNKQVGLE 395

GO:0003924 "GTPase activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0042981 "regulation of apoptotic process" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

UNIPROTKB|Q9H0R5 GBP3 "Guanylate-binding protein 3" [Homo sapiens (taxid:9606)]

 Score = 542 (195.9 bits), Expect = 2.7e-52, P = 2.7e-52
 Identities = 165/581 (28%), Positives = 298/581 (51%)

Query:    42 PIRLVYCDEKGKFRMDPEAVAALQLVKEPIGVVSVCGRARQGKSFILNQLLGRSSGFQVA 101
             P+ L+  +  G+   +PEA+  L  + +P+ VV++ G  R GKS+++N+L G++ GF + 
Sbjct:    10 PMCLIE-NTNGELVANPEALKILSAITQPVVVVAIVGLYRTGKSYLMNKLAGKNKGFSLG 68

Query:   102 STHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI-DAYDQTGTYSTQIFSLAVLLSS 160
             ST +  TKG+W+W  P  +      E+ L+LLD+EG+ D         + IF+LAVLLSS
Sbjct:    69 STVKSHTKGIWMWCVPHPKKP----EHTLVLLDTEGLGDVKKGDNQNDSWIFTLAVLLSS 124

Query:   161 MFIYNQMGGIDESAIDRLSLVTQMTKHIRIRASGGKTT---PSELGQFSPIFVWLLRDFY 217
               +YN MG I++ A+D+L  VT++T  IR ++S  +      ++   F P FVW LRDF 
Sbjct:   125 TLVYNSMGTINQQAMDQLYYVTELTHRIRSKSSPDENENEDSADFVSFFPDFVWTLRDFS 184

Query:   218 LDLVEDNRKITPRDYLEIALRPVQGSGRDIAAKNEIRDSIRALFPDRECFTLVRPLSNEN 277
             LDL  D + +TP +YLE +L+  QG+ +     N  R  IR  FP ++CF    P+ +  
Sbjct:   185 LDLEADGQPLTPDEYLEYSLKLTQGTSQKDKNFNLPRLCIRKFFPKKKCFVFDLPI-HRR 243

Query:   278 ELQRLDQISLDRLRPEFRAGLDALTKFVFERTRPKQV-GATVLTGPVLIGITESYLDAIN 336
             +L +L+++  + L PEF   +     ++F  ++ K + G   + GP L  +  +Y++AI+
Sbjct:   244 KLAQLEKLQDEELDPEFVQQVADFCSYIFSNSKTKTLSGGIKVNGPRLESLVLTYINAIS 303

Query:   337 NGAVPTISSSWQSVEEAECRRAYDSATETYMSTFDRSK--PPEEVA-LGEAHEAAVQKAL 393
              G +P + ++  ++ + E   A   A   Y     +    P E +  L + H  + ++A 
Sbjct:   304 RGDLPCMENAVLALAQIENSAAVQKAIAHYDQQMGQKVQLPAETLQELLDLHRVSEREAT 363

Query:   394 AVYNAGAV-GVG-LARKKYEGLLQKFFRKAFEDHKKNVYMEADIRCSSAIQ----SMERK 447
              VY   +   V  L +KK    L K   K  +  K+N    +D RCS+ +Q     +E +
Sbjct:   364 EVYMKNSFKDVDHLFQKKLAAQLDK---KRDDFCKQNQEASSD-RCSALLQVIFSPLEEE 419

Query:   448 LRAACHSSDASIDNVVKVLDGLISEY-ETSCHGPGKWQKLATFLQQSSEGPILDLVKRLI 506
             ++A  +S        ++ L  L  +Y E    G    + L T+L+  S+  + D + +  
Sbjct:   420 VKAGIYSKPGGYCLFIQKLQDLEKKYYEEPRKGIQAEEILQTYLK--SKESVTDAILQT- 476

Query:   507 DQIGSERSSLM----LKYRSIEDNMKLLKKQ-------LEDSERYKSEYLKRYDDAIN-D 554
             DQI +E+   +    +K  S + + K++++        +E+ E+   E++K+  + +  +
Sbjct:   477 DQILTEKEKEIEVECVKAESAQASAKMVEEMQIKYQQMMEEKEKSYQEHVKQLTEKMERE 536

Query:   555 KKKLADDYTSRINN-LQGENISLREKSSSLSKTVDSLKNEI 594
             + +L ++    + + LQ +   L+E+    S     L+NEI
Sbjct:   537 RAQLLEEQEKTLTSKLQEQARVLKERCQGEST---QLQNEI 574

GO:0003924 "GTPase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0051607 "defense response to virus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0016020 "membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.6.5	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00040459 hypothetical protein (1070 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	736
cd01851	224	cd01851, GBP, Guanylate-binding protein (GBP) fami	3e-63
pfam02263	264	pfam02263, GBP, Guanylate-binding protein, N-termi	2e-62
pfam02841	297	pfam02841, GBP_C, Guanylate-binding protein, C-ter	2e-28
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-10
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-09
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	5e-08
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-07
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	6e-07
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-06
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-06
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	2e-06
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	3e-06
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	5e-06
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-05
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-05
TIGR03319	514	TIGR03319, RNase_Y, ribonuclease Y	2e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-05
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	3e-05
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	4e-05
PRK12704	520	PRK12704, PRK12704, phosphodiesterase; Provisional	4e-05
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-04
COG1579	239	COG1579, COG1579, Zn-ribbon protein, possibly nucl	1e-04
PHA02562	562	PHA02562, 46, endonuclease subunit; Provisional	2e-04
pfam01576	859	pfam01576, Myosin_tail_1, Myosin tail	4e-04
PRK01156	895	PRK01156, PRK01156, chromosome segregation protein	4e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	5e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.001
pfam02841	297	pfam02841, GBP_C, Guanylate-binding protein, C-ter	0.002
pfam08764	282	pfam08764, Coagulase, Staphylococcus aureus coagul	0.002
pfam09726	680	pfam09726, Macoilin, Transmembrane protein	0.002
PRK12704	520	PRK12704, PRK12704, phosphodiesterase; Provisional	0.003
TIGR01843	423	TIGR01843, type_I_hlyD, type I secretion membrane	0.004
pfam05483	787	pfam05483, SCP-1, Synaptonemal complex protein 1 (	0.004

>gnl|CDD|206650 cd01851, GBP, Guanylate-binding protein (GBP) family (N-terminal domain)

 Score =  209 bits (535), Expect = 3e-63
 Identities = 81/245 (33%), Positives = 112/245 (45%), Gaps = 22/245 (8%)

Query: 65  QLVKEPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALD 124
             V  P+ VVSV G    GKSF+LN L G S GF V  T +  TKG+W+WS P K T  D
Sbjct: 1   LDVGFPVVVVSVFGSQSSGKSFLLNHLFGTSDGFDVMDTSQQTTKGIWMWSDPFKDT--D 58

Query: 125 GTEYNLLLLDSEGIDAYDQT-GTYSTQIFSLAVLLSSMFIYNQMGGIDESAIDRLSLVTQ 183
           G ++ +LLLD+EG D  ++       ++F+LA LLSS+ IYN    I    +D+L  + +
Sbjct: 59  GKKHAVLLLDTEGTDGRERGEFENDARLFALATLLSSVLIYNMWQTILGDDLDKLMGLLK 118

Query: 184 MTKHIRIRASGGKTTPSELGQFSPIFVWLLRDFYLDLVEDNRKITPRDYLEIALRPVQGS 243
                    + G        +  P+ ++++RDF      +   +T            + S
Sbjct: 119 TAL-----ETLGLAGLHNFSKPKPLLLFVVRDFTGPTPLEGLDVT------------EKS 161

Query: 244 GRDIAAKNEIRDSIRALFPDRECFTLVRPLSNENELQRLDQISLDRLRPEFRAGLDALTK 303
              I   N+I  SIR  F    CF L  P      LQ      L  L PEFR  L AL +
Sbjct: 162 ETLIEELNKIWSSIRKPFTPITCFVLPHPGLLHKLLQN--DGRLKDLPPEFRKALKALRQ 219

Query: 304 FVFER 308
             F  
Sbjct: 220 RFFSS 224

Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein (GAP) cannot approach. Length = 224

>gnl|CDD|111185 pfam02263, GBP, Guanylate-binding protein, N-terminal domain

 Score =  209 bits (533), Expect = 2e-62
 Identities = 92/261 (35%), Positives = 141/261 (54%), Gaps = 8/261 (3%)

Query: 51  KGKFRMDPEAVAALQLVKEPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKG 110
             +  ++ EA+  L  + +P+ VV++ G  R GKS+++N L G+ +GF + ST    TKG
Sbjct: 1   DHQLELNEEALEILSAITQPVVVVAIVGLYRTGKSYLMNFLAGKLTGFSLGSTVESETKG 60

Query: 111 LWLWSAPLKRTALDGTEYNLLLLDSEGI-DAYDQTGTYSTQIFSLAVLLSSMFIYNQMGG 169
           +W+W  P         ++ L+LLD+EG+ D           IF+LA LLSS F+YN    
Sbjct: 61  IWMWCVPHPN----KPKHTLVLLDTEGLGDVEKSDPKNDAWIFALATLLSSTFVYNSSQT 116

Query: 170 IDESAIDRLSLVTQMTKHIRIRAS---GGKTTPSELGQFSPIFVWLLRDFYLDLVEDNRK 226
           I++ A+ +L LVT++T+ IR ++S   G     +E   F P FVW +RDF L L  D   
Sbjct: 117 INQQALQQLHLVTELTELIRAKSSPRYGRVADSAEFVSFFPDFVWTVRDFSLPLELDGGP 176

Query: 227 ITPRDYLEIALRPVQGSGRDIAAKNEIRDSIRALFPDRECFTLVRPLSNENELQRLDQIS 286
           IT  +YLE  L+  QG   ++   N  R+ IR+ FP R+CF   RP  +     +L+ + 
Sbjct: 177 ITGDEYLENRLKLSQGQHEELQNFNLPRECIRSFFPKRKCFLFDRPGLDVALNPQLEGLR 236

Query: 287 LDRLRPEFRAGLDALTKFVFE 307
            D L PEF+  L     ++F 
Sbjct: 237 EDELDPEFQQQLREFCSYIFS 257

Transcription of the anti-viral guanylate-binding protein (GBP) is induced by interferon-gamma during macrophage induction. This family contains GBP1 and GPB2, both GTPases capable of binding GTP, GDP and GMP. Length = 264

>gnl|CDD|202427 pfam02841, GBP_C, Guanylate-binding protein, C-terminal domain

 Score =  115 bits (289), Expect = 2e-28
 Identities = 70/309 (22%), Positives = 128/309 (41%), Gaps = 37/309 (11%)

Query: 315 GATVLTGPVLIGITESYLDAINNGAVPTISSSWQSVEEAECRRAYDSATETYMSTFD-RS 373
           G   +TGP L  + ++Y+DAIN+GAVP + ++  ++ + E   A   A   Y      + 
Sbjct: 1   GGITVTGPRLGSLVQTYVDAINSGAVPCLENAVLALAQIENSAAVQKAIAHYEQQMAQKV 60

Query: 374 KPPEEV--ALGEAHEAAVQKALAVYNAGAVGVGLARKKYEGLLQKFFRKAFEDHKKNVYM 431
           K P E    L + H    ++A+AV+   +       ++++  L +   K  +D  K    
Sbjct: 61  KLPTETLQELLDLHRDCEKEAIAVFMKRSFKD--ENQEFQKELVELLEKKKDDFLKQNEE 118

Query: 432 EADIRCSSAIQS----MERKLRAACHSSDASIDNVVKVLDGLISEYETSCHGPGKWQKLA 487
            +   CS+ +Q     +E K+     S        ++  D L ++Y      P K  K  
Sbjct: 119 ASSKYCSALLQDLSEPLEEKISQGTFSKPGGYKLFLEERDKLEAKYNQV---PRKGVKAE 175

Query: 488 TFLQ---QSSEG---PILDLVKRLID---QIGSERSSLMLKYRSIEDNMKLLKKQLEDSE 538
             LQ    S E     IL   + L      I +ER+    K  + E   +LL+++ ++ E
Sbjct: 176 EVLQEFLNSKEAVEEAILQTDQALTAKEKAIEAERA----KAEAAEAEQELLREKQKEEE 231

Query: 539 RYKSEYLKRYDDAI--------NDKKKLADDYTSRINN-LQGENISLREKSSSLSKTVDS 589
           +      + Y + +         +++KL  +    + + LQ +   L+E         +S
Sbjct: 232 QMMEAQERSYQEHVKQLIEKMEAEREKLLAEQERMLEHKLQEQEELLKE---GFKTEAES 288

Query: 590 LKNEISDWK 598
           L+ EI D K
Sbjct: 289 LQKEIQDLK 297

Transcription of the anti-viral guanylate-binding protein (GBP) is induced by interferon-gamma during macrophage induction. This family contains GBP1 and GPB2, both GTPases capable of binding GTP, GDP and GMP. Length = 297

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 64.0 bits (156), Expect = 2e-10
 Identities = 45/231 (19%), Positives = 101/231 (43%), Gaps = 10/231 (4%)

Query: 502 VKRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYK---SEYLKRYDDAINDKKKL 558
           +K  +  +      L  +   +E  ++ LK++L   E         L+  ++ + + ++ 
Sbjct: 693 LKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEE 752

Query: 559 ADDYTSRINNLQGENISLREKSSSLSKTVDSLKN---EISDWKRKYDQVLTKQKAMEDQV 615
            ++   R+  L+ E  SL E  + L + ++ L+     + +   + ++ L + +   D +
Sbjct: 753 LEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDAL 812

Query: 616 CSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGV---AVREAKAALEKAAIVQ 672
             E+E L+ R    E  +    E+    +E+++E + +       + E K  LE+    +
Sbjct: 813 ERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEK 872

Query: 673 ERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELK 723
           E    E+++ E+  +EE    L E E E+ E   +IE   + L  L  +L+
Sbjct: 873 EELEDELKELEEE-KEELEEELRELESELAELKEEIEKLRERLEELEAKLE 922

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 61.3 bits (149), Expect = 2e-09
 Identities = 43/211 (20%), Positives = 95/211 (45%), Gaps = 11/211 (5%)

Query: 523 IEDNMKLLKKQLEDSERYK--SEYLKRYDDA-----INDKKKLADDYTSRINNLQGENIS 575
           +E  ++ L++Q E +ERY+     L+  + A     + + +K  ++    ++ L+ E   
Sbjct: 198 LEKQLEKLERQAEKAERYQELKAELRELELALLLAKLKELRKELEELEEELSRLEEELEE 257

Query: 576 LREKSSSLSKTVDSLKNEISDWKRKYDQV---LTKQKAMEDQVCSEIEVLKSRSTAAEAR 632
           L+E+     K ++ LK+E+ + + + +++   L + K   +++  EI +L+ R    E  
Sbjct: 258 LQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENE 317

Query: 633 LAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSS 692
           L    E+    +E++E  K +           LE+     E   +E++++   L EE   
Sbjct: 318 LEELEERLEELKEKIEALKEELE-ERETLLEELEQLLAELEEAKEELEEKLSALLEELEE 376

Query: 693 TLAEKEEEMKEKATKIEHAEQCLTTLRLELK 723
                 EE+ E   ++      L  L+ E++
Sbjct: 377 LFEALREELAELEAELAEIRNELEELKREIE 407

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 56.2 bits (136), Expect = 5e-08
 Identities = 49/248 (19%), Positives = 117/248 (47%), Gaps = 21/248 (8%)

Query: 506 IDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSR 565
           ++++  E      +   +   ++ L+++LE+     SE     ++ I + +K      + 
Sbjct: 241 LEELQEELKEAEEELEELTAELQELEEKLEELRLEVSEL----EEEIEELQKELYALANE 296

Query: 566 INNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCS-------- 617
           I+ L+ +   LRE+ ++L + ++ L+ ++ + + K D++  +   +E+++          
Sbjct: 297 ISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESL 356

Query: 618 --EIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVA---VREAKAALEKAAIVQ 672
             E+E L++     E+RL    EQ  + + +V + + +       +   +A LE+    +
Sbjct: 357 EAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRR 416

Query: 673 ERTSKEMQQREDVL----REEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKVSFFD 728
           ER  +E+++    L     +E  + L E EEE++E   ++E  E+ L  LR EL+ +   
Sbjct: 417 ERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQA 476

Query: 729 IYSNKFYL 736
           + + +  L
Sbjct: 477 LDAAEREL 484

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 54.7 bits (132), Expect = 2e-07
 Identities = 47/236 (19%), Positives = 105/236 (44%), Gaps = 27/236 (11%)

Query: 499 LDLVKRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLED-----SERYKSEYLK------R 547
           L  ++  ++++  E S L  +   IE  ++ L K+++D       R K +  +       
Sbjct: 246 LASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIAS 305

Query: 548 YDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTK 607
            + +I +K++  +D   R+  L+ E   L  +       ++ L+ EI + +++ D++  +
Sbjct: 306 LERSIAEKERELEDAEERLAKLEAEIDKLLAE-------IEELEREIEEERKRRDKLTEE 358

Query: 608 QKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEK 667
              +++    E+E L++     +   A  R++    +E++E+ KR+     RE     E+
Sbjct: 359 YAELKE----ELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEE 414

Query: 668 AAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELK 723
               Q  + +       +   E  + + E EEE ++KA +I+  E  L  L  +L 
Sbjct: 415 L---QRLSEELADLNAAIAGIE--AKINELEEEKEDKALEIKKQEWKLEQLAADLS 465

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 52.8 bits (127), Expect = 6e-07
 Identities = 40/225 (17%), Positives = 100/225 (44%), Gaps = 24/225 (10%)

Query: 511 SERSSLMLKYRS-IEDNMKLLKKQLEDSE-------RYKSEYLKRYDDAINDKKKLADDY 562
           ++ +S +L+ R  IE+  + +++  E            + E L+  ++ +   +K  ++ 
Sbjct: 666 AKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKE-LEELEEELEQLRKELEEL 724

Query: 563 TSRINNLQGENISLREKSSSLSKTVDSLKNEISDW---KRKYDQVLTKQKAMEDQVCSEI 619
           + +I+ L+ +   L  +   L + +  L  E+++      + ++ L + +    +  +EI
Sbjct: 725 SRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEI 784

Query: 620 EVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEM 679
           E L+++    +  L A RE     + E+     +    +RE   +LE+     ER  +++
Sbjct: 785 EELEAQIEQLKEELKALREALDELRAELTLLNEEAA-NLRERLESLERRIAATERRLEDL 843

Query: 680 QQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKV 724
           +++           + E  E+++  A +IE  E+ +  L  EL+ 
Sbjct: 844 EEQ-----------IEELSEDIESLAAEIEELEELIEELESELEA 877

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 51.6 bits (124), Expect = 1e-06
 Identities = 58/290 (20%), Positives = 112/290 (38%), Gaps = 20/290 (6%)

Query: 439 SAIQSMERKLRAACHSSDASIDNVVKVLDGLISEYETSCHGPGKWQKLATFLQQSSEGPI 498
             ++    +LR         I  + K L  L +E E       +  K  T L+   E   
Sbjct: 708 EELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELE 767

Query: 499 LDLVK--RLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKK 556
             L +    + +  +E   L  +   +++ +K L++ L++        L   ++   + +
Sbjct: 768 ERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDE----LRAELTLLNEEAANLR 823

Query: 557 KLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVC 616
           +  +    RI   +     L E+   LS+ ++SL  EI +            + + +++ 
Sbjct: 824 ERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEE-----------LEELIEELE 872

Query: 617 SEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVR---EAKAALEKAAIVQE 673
           SE+E L +   + E  LA  R +     EE+ E + K     R   E +  L +  +  E
Sbjct: 873 SELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLE 932

Query: 674 RTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELK 723
                +   ++ L EE+S TL E E    +     E A + L  L  ++K
Sbjct: 933 GLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIK 982

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 51.2 bits (123), Expect = 2e-06
 Identities = 48/229 (20%), Positives = 91/229 (39%), Gaps = 43/229 (18%)

Query: 521 RSIEDNMKLLKKQLEDSERYKS---------------------EYLKRYDDAINDKKKLA 559
             +E  +K L++Q E +ERYK                      E L+   + + + ++  
Sbjct: 196 NELERQLKSLERQAEKAERYKELKAELRELELALLVLRLEELREELEELQEELKEAEEEL 255

Query: 560 DDYTSRINNLQG-------ENISLREKSSSLSKTVDSLKNEISDW---KRKYDQVLTKQK 609
           ++ T+ +  L+        E   L E+   L K + +L NEIS     K+   + L   +
Sbjct: 256 EELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLE 315

Query: 610 AMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAA 669
              +++ +++E L+S+       LA   E+    +EE+E                 E  A
Sbjct: 316 RQLEELEAQLEELESKLDELAEELAELEEKLEELKEELES----------LEAELEELEA 365

Query: 670 IVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTL 718
            ++E  S+  +  E +  E   S +A+ E ++     +IE  E  L  L
Sbjct: 366 ELEELESRLEELEEQL--ETLRSKVAQLELQIASLNNEIERLEARLERL 412

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 51.2 bits (123), Expect = 2e-06
 Identities = 56/235 (23%), Positives = 105/235 (44%), Gaps = 22/235 (9%)

Query: 506 IDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYK--SEYLKRYDDAINDKKKLADDYT 563
           I ++      L  +   +E+ +K LK+  E +E Y   SE+ + Y D + + +K      
Sbjct: 261 IRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLE 320

Query: 564 SRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMED--QVCSEIEV 621
             IN ++     L EK   L +    LK ++ + +++ +++  + +  E+      E+E 
Sbjct: 321 EEINGIEERIKELEEKEERLEE----LKKKLKELEKRLEELEERHELYEEAKAKKEELER 376

Query: 622 LKSRSTAAE-ARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALE--KAAIVQERTSK- 677
           LK R T     +L    E+   A+EE+EE   K    + E K  ++  K AI + + +K 
Sbjct: 377 LKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKG 436

Query: 678 ---------EMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELK 723
                      + R+++L E +++ L   E+E+KE   K     + L  L   LK
Sbjct: 437 KCPVCGRELTEEHRKELLEE-YTAELKRIEKELKEIEEKERKLRKELRELEKVLK 490

Length = 880

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 50.4 bits (121), Expect = 3e-06
 Identities = 46/218 (21%), Positives = 101/218 (46%), Gaps = 18/218 (8%)

Query: 519 KYRSIEDNMKLLKKQLEDSERYKSEYLKR---YDDAINDKKKLADDYTSRINNLQGENIS 575
            Y +   N+  + K+++       +++KR    ++ I +K+K  ++    IN +  E   
Sbjct: 159 DYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPE 218

Query: 576 LREKSSSLSK---TVDSLKNEISDWKRKYDQVLTKQKAMED---QVCSEIEVLKSRSTAA 629
           LRE+   L K    ++ LK EI + +++ + +   ++ +E+   ++   IE LK      
Sbjct: 219 LREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEEL 278

Query: 630 EARLAAAREQALSAQE--EVEEWKRKYGVAVREAKAAL----EKAAIVQERTSK--EMQQ 681
           E ++   +E    A+E  ++ E+  +Y   +RE +  L    E+   ++ER  +  E ++
Sbjct: 279 EEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEE 338

Query: 682 REDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLR 719
           R + L+++         EE++E+    E A+     L 
Sbjct: 339 RLEELKKKLKELEKRL-EELEERHELYEEAKAKKEELE 375

Length = 880

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 49.7 bits (119), Expect = 5e-06
 Identities = 48/222 (21%), Positives = 99/222 (44%), Gaps = 10/222 (4%)

Query: 506 IDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEY---LKRYDDAINDKKKLADDY 562
           + ++  E   L  +   +E+ ++ L+++LE++E+   E    L+   + + + ++   + 
Sbjct: 234 LKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLEL 293

Query: 563 TSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVL 622
              I  L+GE   LRE+   L   ++ L+  + + K K + +  + +  E  +  E+E L
Sbjct: 294 KEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLL-EELEQL 352

Query: 623 KSRSTAAEARLAAAREQALSAQEE-VEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQ 681
            +    A+  L       L   EE  E  + +      E +A L +     E   +E++ 
Sbjct: 353 LAELEEAKEELEEKLSALLEELEELFEALREEL----AELEAELAEIRNELEELKREIES 408

Query: 682 REDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELK 723
            E+   E  S  L + +EE+KE   ++E  +  L  L  EL+
Sbjct: 409 LEE-RLERLSERLEDLKEELKELEAELEELQTELEELNEELE 449

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 48.6 bits (116), Expect = 1e-05
 Identities = 37/199 (18%), Positives = 93/199 (46%), Gaps = 2/199 (1%)

Query: 525 DNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLS 584
             ++   ++LE+  +     L+  +D + + ++  ++   ++  L+ E  +L E+   L 
Sbjct: 677 AELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQ 736

Query: 585 KTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQ 644
             ++ L+ E+ + + + +++  + + +E+++   +E   ++       L   R+      
Sbjct: 737 SRLEELEEELEELEEELEELQERLEELEEEL-ESLEEALAKLKEEIEELEEKRQALQEEL 795

Query: 645 EEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEK 704
           EE+EE   +    +   +  LE     +ER  +E+++ E+   EE    L E EEE++E 
Sbjct: 796 EELEEELEEAERRLDALERELESLEQRRERLEQEIEELEE-EIEELEEKLDELEEELEEL 854

Query: 705 ATKIEHAEQCLTTLRLELK 723
             ++E  ++ L  L  E +
Sbjct: 855 EKELEELKEELEELEAEKE 873

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 48.1 bits (115), Expect = 2e-05
 Identities = 39/230 (16%), Positives = 98/230 (42%), Gaps = 13/230 (5%)

Query: 500 DLVKRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDD---AINDKK 556
            L+K   +  G E   L+ +  ++E   + +++QL   E    +  +   +    + + +
Sbjct: 215 ALLKEKREYEGYE---LLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIE 271

Query: 557 KLADDYTSRINNL-QGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQV 615
           +L ++   +I +L + E + ++EK   L   + SL+  I++ +R+ +    +   +E   
Sbjct: 272 QLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLE--- 328

Query: 616 CSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERT 675
            +EI+ L +     E  +   R++     EE  E K +      E +   ++ A  ++  
Sbjct: 329 -AEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDEL 387

Query: 676 SKEMQQREDVLRE--EFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELK 723
               ++ E + RE  E    L   +EE++  + ++      +  +  ++ 
Sbjct: 388 KDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKIN 437

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y

 Score = 47.6 bits (114), Expect = 2e-05
 Identities = 27/127 (21%), Positives = 61/127 (48%), Gaps = 9/127 (7%)

Query: 591 KNEISDWKRKYDQVLT----KQKAMEDQVCSEIEVLKSRSTAAEARLAA--AREQALSAQ 644
           K E+   + + ++ L     + + +E ++    E L  +  + + +      +E+ LS +
Sbjct: 57  KEEVHKLRAELERELKERRNELQRLERRLLQREETLDRKMESLDKKEENLEKKEKELSNK 116

Query: 645 E-EVEEWKRKYGVAVREAKAALEK-AAIVQERTSKE-MQQREDVLREEFSSTLAEKEEEM 701
           E  ++E + +    + E +  LE+ + + QE   +  +++ E+  R E +  + E EEE 
Sbjct: 117 EKNLDEKEEELEELIAEQREELERISGLTQEEAKEILLEEVEEEARHEAAKLIKEIEEEA 176

Query: 702 KEKATKI 708
           KE+A K 
Sbjct: 177 KEEADKK 183

Members of this family are RNase Y, an endoribonuclease. The member from Bacillus subtilis, YmdA, has been shown to be involved in turnover of yitJ riboswitch [Transcription, Degradation of RNA]. Length = 514

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 47.4 bits (113), Expect = 3e-05
 Identities = 53/297 (17%), Positives = 117/297 (39%), Gaps = 31/297 (10%)

Query: 439  SAIQSMERKLRAACHSSDASIDNVVKVLDGLISEYETSCHGPGKWQKLATFLQQSSE--G 496
            +A++    +L++     +  ++ + + L+ L    E         ++    L++  E   
Sbjct: 726  AALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELE 785

Query: 497  PILDLVKRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKK 556
                 ++  ++++  E      +  ++E  ++ L+++ E  E+   E  +  ++      
Sbjct: 786  EKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLD 845

Query: 557  KLADD---YTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMED 613
            +L ++       +  L+ E   L  +   L   +  L+ E  + + +  ++ ++   ++ 
Sbjct: 846  ELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELK- 904

Query: 614  QVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVE---------EWKRKYGVAVREAKA- 663
                EIE L+ R    EA+L     +    +EE+E         E +R+      E +A 
Sbjct: 905  ---EEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELEREIERLEEEIEAL 961

Query: 664  ------ALEKAAIVQERTSKEMQQREDV------LREEFSSTLAEKEEEMKEKATKI 708
                  A+E+   V+ER  +   QRED+      L E       EK E  KE   KI
Sbjct: 962  GPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDKEKRERFKETFDKI 1018

Length = 1163

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 47.1 bits (112), Expect = 3e-05
 Identities = 43/240 (17%), Positives = 106/240 (44%), Gaps = 21/240 (8%)

Query: 484 QKLATFLQQSSEGPILDLVKRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSE 543
           +KL    ++  E  +   ++ L +++         +    ++ ++ LK +L + E  + E
Sbjct: 216 KKLEEIQEEQEEEELEQEIEALEERL--------AELEEEKERLEELKARLLEIESLELE 267

Query: 544 YLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQ 603
            LK  ++ + + ++L ++   +I  L+     + E           L+ E+   +   ++
Sbjct: 268 ALKIREEELRELERLLEELEEKIERLEELEREIEE-----------LEEELEGLRALLEE 316

Query: 604 VLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKA 663
           +    + ++      +E L+ +    E+ L    E+     + +EE  ++    + E + 
Sbjct: 317 LEELLEKLKSL-EERLEKLEEKLEKLESELEELAEEKNELAKLLEERLKELEERLEELEK 375

Query: 664 ALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELK 723
            LEKA    ++  + +Q+ ++    E S+ L E +EE++E   ++E  E+ L  L  E+K
Sbjct: 376 ELEKALERLKQLEEAIQELKE-ELAELSAALEEIQEELEELEKELEELERELEELEEEIK 434

Length = 908

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 46.6 bits (111), Expect = 4e-05
 Identities = 44/244 (18%), Positives = 96/244 (39%), Gaps = 30/244 (12%)

Query: 500  DLVKRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLA 559
             +  RL + I  + + L L+   +E  ++ L++Q  D +       K  ++    K++L 
Sbjct: 809  RIEARLRE-IEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELE 867

Query: 560  DDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEI 619
                  +  L+     L  +   L K  D L+ ++ + +RK ++     +A  ++    +
Sbjct: 868  ----EELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEE----LEAQIEKKRKRL 919

Query: 620  EVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEM 679
              LK++  A E  L+   +     +E  EE            + +LE      +R  +E+
Sbjct: 920  SELKAKLEALEEELSEIEDPKGEDEEIPEE------------ELSLEDVQAELQRVEEEI 967

Query: 680  QQREDV---LREEFSSTLA------EKEEEMKEKATKIEHAEQCLTTLRLELKVSFFDIY 730
            +  E V     +E+   L       EK  +++E+   I    +     + E+ +  F+  
Sbjct: 968  RALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKKREVFMEAFEAI 1027

Query: 731  SNKF 734
            +  F
Sbjct: 1028 NENF 1031

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional

 Score = 46.7 bits (112), Expect = 4e-05
 Identities = 35/182 (19%), Positives = 79/182 (43%), Gaps = 22/182 (12%)

Query: 528 KLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTV 587
           K+ + +++++E      L+         KK A      +   + E   LR +        
Sbjct: 27  KIAEAKIKEAEEEAKRILEEAKKEAEAIKKEA------LLEAKEEIHKLRNE-------- 72

Query: 588 DSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEV 647
              + E+ + + +  ++  +    E+ +  ++E+L+ R    E  L    ++    Q+E+
Sbjct: 73  --FEKELRERRNELQKLEKRLLQKEENLDRKLELLEKR----EEELEKKEKELEQKQQEL 126

Query: 648 EEWKRKYGVAVREAKAALEKAAIVQERTSKEM--QQREDVLREEFSSTLAEKEEEMKEKA 705
           E+ + +    + E    LE+ + +    +KE+  ++ E+  R E +  + E EEE KE+A
Sbjct: 127 EKKEEELEELIEEQLQELERISGLTAEEAKEILLEKVEEEARHEAAVLIKEIEEEAKEEA 186

Query: 706 TK 707
            K
Sbjct: 187 DK 188

Length = 520

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 45.4 bits (108), Expect = 1e-04
 Identities = 34/192 (17%), Positives = 82/192 (42%), Gaps = 10/192 (5%)

Query: 531 KKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSL 590
              LE         L+  +  +++  +   +   ++  L+ E  SL  +   L   ++ L
Sbjct: 311 LANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEEL 370

Query: 591 KNEISDWKRKYDQVLTKQKAMEDQVCS---EIEVLKSRSTAAEARLAAAREQALSAQEEV 647
           ++ + + + + + + +K   +E Q+ S   EIE L++R    E R    +++     +++
Sbjct: 371 ESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKL 430

Query: 648 EEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATK 707
           EE + K    ++     LE+     +   + +++  + LREE    L E E+ +     +
Sbjct: 431 EEAELK---ELQAELEELEEELEELQEELERLEEALEELREE----LEEAEQALDAAERE 483

Query: 708 IEHAEQCLTTLR 719
           +   +  L +L 
Sbjct: 484 LAQLQARLDSLE 495

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224495 COG1579, COG1579, Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

 Score = 44.3 bits (105), Expect = 1e-04
 Identities = 37/164 (22%), Positives = 69/164 (42%), Gaps = 10/164 (6%)

Query: 565 RINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKS 624
            I  L  E   L  +   + K +   K E+    +  + +  + + +E+QV      L+S
Sbjct: 11  AIQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQ----LES 66

Query: 625 RSTAAEARLAAAREQ--ALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQR 682
                  R+  A E+  A+  + E+     +  +A     +  ++ A + E   K  ++ 
Sbjct: 67  EIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEI 126

Query: 683 EDVLREEFSST---LAEKEEEMKEKATKIEHAEQCLTTLRLELK 723
           ED L+E        LAE E  ++E+  +I    Q L++ R ELK
Sbjct: 127 ED-LKERLERLEKNLAEAEARLEEEVAEIREEGQELSSKREELK 169

Length = 239

>gnl|CDD|222878 PHA02562, 46, endonuclease subunit; Provisional

 Score = 44.6 bits (106), Expect = 2e-04
 Identities = 39/233 (16%), Positives = 83/233 (35%), Gaps = 24/233 (10%)

Query: 501 LVKRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLAD 560
           L K  I ++  +  +L +K   I+  +K   K +E+  +   E + R  +  ++  + A 
Sbjct: 171 LNKDKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAK 230

Query: 561 DYTSRINNLQGE----NISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAM--EDQ 614
              + I  L  E     + + + S++L+K    L    +  K K +Q   K   M  +  
Sbjct: 231 TIKAEIEELTDELLNLVMDIEDPSAALNK----LNTAAAKIKSKIEQ-FQKVIKMYEKGG 285

Query: 615 VC----SEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAI 670
           VC     +I            R+   +++    Q  +E+                E++  
Sbjct: 286 VCPTCTQQIS-------EGPDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKK 338

Query: 671 VQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELK 723
           + E  +K    ++ ++     +   +   E  +        E  L  L+ EL 
Sbjct: 339 LLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEE--LAKLQDELD 389

Length = 562

>gnl|CDD|144972 pfam01576, Myosin_tail_1, Myosin tail

 Score = 43.5 bits (103), Expect = 4e-04
 Identities = 58/279 (20%), Positives = 108/279 (38%), Gaps = 77/279 (27%)

Query: 499 LDLVKRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAIND---- 554
           L+  KR +++   ER++L  + R +E ++  L++QLE+    K+E  ++   A  +    
Sbjct: 245 LEEAKRSLEEESRERANLQAQLRQLEHDLDSLREQLEEESEAKAELERQLSKANAEIQQW 304

Query: 555 KKKLADD--------------YTSRINNLQGENISLREKSSSLSKTVDSLKNEISDW--- 597
           + K   +                 +I+ L+    +   K  SL KT   L++E+ D    
Sbjct: 305 RSKFESEGALRAEELEELKKKLNQKISELEEAAEAANAKCDSLEKTKSRLQSELEDLQIE 364

Query: 598 --------------KRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEA---RLAAAREQA 640
                         ++ +D++L + K   D++ +E++  +  +        RL    E+ 
Sbjct: 365 LERANAAASELEKKQKNFDKILAEWKRKVDELQAELDTAQREARNLSTELFRLKNELEEL 424

Query: 641 LSAQE----------------------------EVEEWKRKYGVAVREAKAALEKA--AI 670
               E                            E+E+ +R+      E +AALE+A  A+
Sbjct: 425 KDQVEALRRENKNLQDEIHDLTDQLGEGGRNVHELEKARRRLEAEKDELQAALEEAEAAL 484

Query: 671 VQE-----RTSKEMQQREDVLREEFSSTLAEKEEEMKEK 704
             E     R   E+ Q    +R E    LAEKEEE +  
Sbjct: 485 ELEESKVLRAQVELSQ----IRSEIERRLAEKEEEFENT 519

The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament. Length = 859

>gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional

 Score = 43.4 bits (102), Expect = 4e-04
 Identities = 26/142 (18%), Positives = 61/142 (42%), Gaps = 9/142 (6%)

Query: 506 IDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAIN---DKKKLADDY 562
           I+   S  + +  +   +E  ++ ++    D + Y  + ++  ++  N   +K     + 
Sbjct: 582 IETNRSRSNEIKKQLNDLESRLQEIEIGFPDDKSYIDKSIREIENEANNLNNKYNEIQEN 641

Query: 563 TSRINNLQGENISLREKSSSLSKTVDSLK------NEISDWKRKYDQVLTKQKAMEDQVC 616
              I  L+G+  + +++ + +   +  LK      N+I D  +K  + L   KA   ++ 
Sbjct: 642 KILIEKLRGKIDNYKKQIAEIDSIIPDLKEITSRINDIEDNLKKSRKALDDAKANRARLE 701

Query: 617 SEIEVLKSRSTAAEARLAAARE 638
           S IE+L++R      R+    E
Sbjct: 702 STIEILRTRINELSDRINDINE 723

Length = 895

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 43.1 bits (102), Expect = 5e-04
 Identities = 49/232 (21%), Positives = 98/232 (42%), Gaps = 32/232 (13%)

Query: 502 VKRLIDQIGS---ERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKL 558
           ++RL +++     E SSL  + R IE+ +  L ++L D+ R   E  K            
Sbjct: 676 LQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEK------------ 723

Query: 559 ADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSE 618
                  I  L+ E   L+E+   L + + SL+ EI + K +  ++  + + +E+     
Sbjct: 724 ------EIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEED---- 773

Query: 619 IEVLKSRSTAAEARLAAAREQALSAQ-EEVEEWKRKYGVAVREAKAALEKAAIVQERTSK 677
           +  L+      EARL+ +R   + A+  ++EE   +    +RE +  L +  + +E   K
Sbjct: 774 LHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEK 833

Query: 678 EMQQREDVLRE------EFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELK 723
           E+Q+ ++   +           +     + +E   ++E  E  L  L   L 
Sbjct: 834 EIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLG 885

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 42.0 bits (99), Expect = 0.001
 Identities = 36/186 (19%), Positives = 81/186 (43%), Gaps = 9/186 (4%)

Query: 503 KRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDY 562
           +R I++    R  L  +Y  +++ ++ L+ +LE+      +      D + D ++  +  
Sbjct: 342 EREIEEERKRRDKLTEEYAELKEELEDLRAELEE----VDKEFAETRDELKDYREKLEKL 397

Query: 563 TSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVL 622
              IN L+ E   L+E+   LS+ +  L   I+  + K +++  +++        EI+  
Sbjct: 398 KREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKAL----EIKKQ 453

Query: 623 KSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQR 682
           + +     A L+   ++    +EE +  +++     RE  A  E  A   E   +  +  
Sbjct: 454 EWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQREL-AEAEAQARASEERVRGGRAV 512

Query: 683 EDVLRE 688
           E+VL+ 
Sbjct: 513 EEVLKA 518

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|202427 pfam02841, GBP_C, Guanylate-binding protein, C-terminal domain

 Score = 40.3 bits (95), Expect = 0.002
 Identities = 35/162 (21%), Positives = 75/162 (46%), Gaps = 22/162 (13%)

Query: 548 YDDAINDKKKLADDYTSRINN-LQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLT 606
           Y   + ++ KL   Y       ++ E +        L + ++S K  + +   + DQ LT
Sbjct: 150 YKLFLEERDKLEAKYNQVPRKGVKAEEV--------LQEFLNS-KEAVEEAILQTDQALT 200

Query: 607 KQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVR--EAKAA 664
            ++         IE  ++++ AAEA     RE+    ++ +E  +R Y   V+    K  
Sbjct: 201 AKE-------KAIEAERAKAEAAEAEQELLREKQKEEEQMMEAQERSYQEHVKQLIEKME 253

Query: 665 LEKAAIV--QERT-SKEMQQREDVLREEFSSTLAEKEEEMKE 703
            E+  ++  QER    ++Q++E++L+E F +     ++E+++
Sbjct: 254 AEREKLLAEQERMLEHKLQEQEELLKEGFKTEAESLQKEIQD 295

Transcription of the anti-viral guanylate-binding protein (GBP) is induced by interferon-gamma during macrophage induction. This family contains GBP1 and GPB2, both GTPases capable of binding GTP, GDP and GMP. Length = 297

>gnl|CDD|204055 pfam08764, Coagulase, Staphylococcus aureus coagulase

 Score = 40.5 bits (95), Expect = 0.002
 Identities = 24/102 (23%), Positives = 47/102 (46%), Gaps = 2/102 (1%)

Query: 518 LKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLR 577
           L  R + ++  LL+K+  + E+YK  Y K  ++  N K K+   +   + +L  +  +  
Sbjct: 60  LMTRILGEDQYLLEKKKAEYEKYKKWYKKYKEENPNSKLKMKTFHKYNLYDLTMKEYN-- 117

Query: 578 EKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEI 619
           E S SL   V+  K E+   + K   +    +  E++   E+
Sbjct: 118 EISKSLKDAVEDFKKEVKKIQSKNSDLKPYSEEEEEKATDEV 159

Staphylococcus aureus secretes a cofactor called coagulase. Coagulase is an extracellular protein that forms a complex with human prothrombin, and activates it without the usual proteolytic cleavages. The resulting complex directly initiates blood clotting. Length = 282

>gnl|CDD|220365 pfam09726, Macoilin, Transmembrane protein

 Score = 41.1 bits (96), Expect = 0.002
 Identities = 45/183 (24%), Positives = 83/183 (45%), Gaps = 33/183 (18%)

Query: 554 DKKKL-ADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAME 612
           D KKL A+   +R    Q E+  LR + S L+    SLK+++   K++ D + TK  +M 
Sbjct: 414 DIKKLQAELQQAR----QNES-ELRNQISLLTSLERSLKSDLGQLKKENDMLQTKLNSMV 468

Query: 613 DQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQ 672
                + + ++S     E RL +  +  ++A++++ E K++      E  AA    A  Q
Sbjct: 469 SAKQKDKQSMQS----MEKRLKSEADSRVNAEKQLAEEKKRKKEE--EETAA---RAAAQ 519

Query: 673 ERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEH-----AEQCLTTLRLELKVSFF 727
              S          REE + +L + +++++ +  K+EH      E+C     LE +    
Sbjct: 520 AAAS----------REECAESLKQAKQDLEMEIKKLEHDLKLKEEECRM---LEKEAQEL 566

Query: 728 DIY 730
             Y
Sbjct: 567 RKY 569

This entry is a highly conserved protein present in eukaryotes. Length = 680

>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional

 Score = 40.5 bits (96), Expect = 0.003
 Identities = 30/110 (27%), Positives = 54/110 (49%), Gaps = 19/110 (17%)

Query: 629 AEARLAAAREQALS----AQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKE------ 678
           AEA++  A E+A      A++E E  K++   A+ EAK  + K     E+  +E      
Sbjct: 29  AEAKIKEAEEEAKRILEEAKKEAEAIKKE---ALLEAKEEIHKLRNEFEKELRERRNELQ 85

Query: 679 -----MQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELK 723
                + Q+E+ L  +    L ++EEE+++K  ++E  +Q L     EL+
Sbjct: 86  KLEKRLLQKEENLDRK-LELLEKREEELEKKEKELEQKQQELEKKEEELE 134

Length = 520

>gnl|CDD|130902 TIGR01843, type_I_hlyD, type I secretion membrane fusion protein, HlyD family

 Score = 40.0 bits (94), Expect = 0.004
 Identities = 39/163 (23%), Positives = 73/163 (44%), Gaps = 19/163 (11%)

Query: 493 SSEGPILD-LVKRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSE---RYKSEYLKRY 548
           S+E P +  L+K       S +S+L  +   I   +K L+ +L   +   +   + L+  
Sbjct: 118 SAEDPAVPELIKGQQSLFESRKSTLRAQLELILAQIKQLEAELAGLQAQLQALRQQLEVI 177

Query: 549 DDAINDKKKLADD-YTSRINNLQGENISLREKSSSLSK---TVDSLKNEISDWKRKYDQV 604
            + +  ++KL +    SR+  L+ E     E    L +    ++ LK +I + + +  Q 
Sbjct: 178 SEELEARRKLKEKGLVSRLELLELER-ERAEAQGELGRLEAELEVLKRQIDELQLERQQ- 235

Query: 605 LTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEV 647
             +Q   E       EVL+   T A+ARLA  RE+   A++ +
Sbjct: 236 -IEQTFRE-------EVLEEL-TEAQARLAELRERLNKARDRL 269

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins [Protein fate, Protein and peptide secretion and trafficking]. Length = 423

>gnl|CDD|114219 pfam05483, SCP-1, Synaptonemal complex protein 1 (SCP-1)

 Score = 40.1 bits (93), Expect = 0.004
 Identities = 55/249 (22%), Positives = 114/249 (45%), Gaps = 28/249 (11%)

Query: 492 QSSEGPILDLVKRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDA 551
           +  E  + D ++ + ++   +   +  K    E+N     + +E     K + +K  ++ 
Sbjct: 540 EEKEMNLRDELESVREEFIQKGDEVKCKLDKSEEN----ARSIEYEVLKKEKQMKILENK 595

Query: 552 INDKKKLADDYTSRINNLQGENISLREKSSSLSK-------TVDSLKNEISDWKRKYDQV 604
            N+ KK  ++    I  L  EN +L++K S+ +K        V+ L+ E++  K+K++++
Sbjct: 596 CNNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNKLELELASAKQKFEEI 655

Query: 605 L-TKQKAMEDQVCSEI----EVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVR 659
           +   QK +ED+  SE     EV K+++ A EA +   +E     Q ++ E      VA+ 
Sbjct: 656 IDNYQKEIEDKKISEEKLLEEVEKAKAIADEA-VKLQKEIDKRCQHKIAEM-----VALM 709

Query: 660 EAKAALEKAAIVQERTS-----KEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQC 714
           E K   +   I++ER S     K  +Q +   +      L+  + E+     ++E  ++ 
Sbjct: 710 E-KHKHQYDKIIEERDSELGLYKNKEQEQSSAKAALEIELSNIKAELLSLKKQLEIEKEE 768

Query: 715 LTTLRLELK 723
              L++E K
Sbjct: 769 KEKLKMEAK 777

Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase. Length = 787

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	736
PF02263	260	GBP: Guanylate-binding protein, N-terminal domain;	100.0
KOG2037	552	consensus Guanylate-binding protein [General funct	100.0
cd01851	224	GBP Guanylate-binding protein (GBP), N-terminal do	100.0
PF02841	297	GBP_C: Guanylate-binding protein, C-terminal domai	100.0
KOG2037	552	consensus Guanylate-binding protein [General funct	99.97
PF05879	742	RHD3: Root hair defective 3 GTP-binding protein (R	99.96
KOG2203	772	consensus GTP-binding protein [General function pr	99.95
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	99.31
PF00038	312	Filament: Intermediate filament protein; InterPro:	99.01
KOG4181	491	consensus Uncharacterized conserved protein [Funct	98.86
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	98.41
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	98.38
PF00038	312	Filament: Intermediate filament protein; InterPro:	98.34
COG1159	298	Era GTPase [General function prediction only]	98.28
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	98.25
PHA02562	562	46 endonuclease subunit; Provisional	98.25
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	98.25
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	98.23
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	98.2
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	98.2
PRK04778	569	septation ring formation regulator EzrA; Provision	98.19
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	98.19
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	98.18
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	98.16
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	98.12
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	98.11
PRK02224	880	chromosome segregation protein; Provisional	98.11
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	98.08
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	98.08
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	98.06
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	98.04
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	98.01
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	98.01
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	97.99
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	97.99
PRK02224	880	chromosome segregation protein; Provisional	97.98
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	97.98
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	97.98
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	97.93
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	97.9
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	97.89
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	97.89
PF05010	207	TACC: Transforming acidic coiled-coil-containing p	97.88
PHA02562	562	46 endonuclease subunit; Provisional	97.88
KOG0963	629	consensus Transcription factor/CCAAT displacement	97.84
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	97.81
PRK00089	292	era GTPase Era; Reviewed	97.79
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	97.77
PRK11637	428	AmiB activator; Provisional	97.76
PRK04863	1486	mukB cell division protein MukB; Provisional	97.76
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	97.75
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	97.74
PRK03918	880	chromosome segregation protein; Provisional	97.72
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	97.69
KOG1853	333	consensus LIS1-interacting protein NUDE [Cytoskele	97.64
KOG0971	1243	consensus Microtubule-associated protein dynactin	97.64
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	97.64
KOG0996	1293	consensus Structural maintenance of chromosome pro	97.64
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	97.63
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	97.62
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	97.61
PRK04863	1486	mukB cell division protein MukB; Provisional	97.6
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	97.6
PRK10698	222	phage shock protein PspA; Provisional	97.59
COG4942	420	Membrane-bound metallopeptidase [Cell division and	97.57
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	97.57
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	97.57
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	97.56
PF02841	297	GBP_C: Guanylate-binding protein, C-terminal domai	97.56
PF10220	895	DUF2146: Uncharacterized conserved protein (DUF214	97.55
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	97.54
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	97.54
PF05010	207	TACC: Transforming acidic coiled-coil-containing p	97.53
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	97.53
PRK04778	569	septation ring formation regulator EzrA; Provision	97.49
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	97.45
KOG1003	205	consensus Actin filament-coating protein tropomyos	97.44
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	97.4
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	97.36
PRK03918	880	chromosome segregation protein; Provisional	97.35
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	97.34
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	97.34
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	97.33
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	97.33
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	97.32
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	97.3
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	97.3
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	97.3
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	97.28
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	97.27
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	97.21
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	97.21
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	97.2
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	97.18
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	97.18
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	97.17
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	97.15
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	97.15
KOG1423	379	consensus Ras-like GTPase ERA [Cell cycle control,	97.14
PRK09039	343	hypothetical protein; Validated	97.13
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	97.13
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	97.12
KOG0999	772	consensus Microtubule-associated protein Bicaudal-	97.1
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	97.09
PF15066	527	CAGE1: Cancer-associated gene protein 1 family	97.08
PRK09039	343	hypothetical protein; Validated	97.06
KOG0933	1174	consensus Structural maintenance of chromosome pro	97.05
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	97.04
PRK12289	352	GTPase RsgA; Reviewed	97.03
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	97.01
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	97.0
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	96.98
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	96.98
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	96.97
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	96.97
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	96.96
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	96.95
PRK15494	339	era GTPase Era; Provisional	96.95
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	96.94
PRK12288	347	GTPase RsgA; Reviewed	96.92
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	96.92
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	96.91
TIGR02977	219	phageshock_pspA phage shock protein A. Members of	96.9
PRK12298	390	obgE GTPase CgtA; Reviewed	96.9
COG5185	622	HEC1 Protein involved in chromosome segregation, i	96.9
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	96.89
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	96.87
PRK01156	895	chromosome segregation protein; Provisional	96.81
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	96.8
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	96.79
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	96.79
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	96.79
KOG0996	1293	consensus Structural maintenance of chromosome pro	96.79
KOG0964	1200	consensus Structural maintenance of chromosome pro	96.78
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	96.77
COG1161	322	Predicted GTPases [General function prediction onl	96.77
KOG0971	1243	consensus Microtubule-associated protein dynactin	96.75
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	96.75
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	96.75
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	96.75
PF04012	221	PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T	96.74
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	96.73
COG1084	346	Predicted GTPase [General function prediction only	96.73
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	96.73
PRK09563	287	rbgA GTPase YlqF; Reviewed	96.72
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	96.7
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	96.7
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	96.69
PF13870	177	DUF4201: Domain of unknown function (DUF4201)	96.69
PRK11058	426	GTPase HflX; Provisional	96.68
TIGR03017	444	EpsF chain length determinant protein EpsF. Sequen	96.67
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	96.67
KOG0964	1200	consensus Structural maintenance of chromosome pro	96.66
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	96.65
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	96.62
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	96.62
PF09787	511	Golgin_A5: Golgin subfamily A member 5; InterPro:	96.62
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	96.6
cd01881	176	Obg_like The Obg-like subfamily consists of five w	96.6
cd00881	189	GTP_translation_factor GTP translation factor fami	96.59
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	96.58
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	96.58
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	96.58
PRK10698	222	phage shock protein PspA; Provisional	96.58
PRK00098	298	GTPase RsgA; Reviewed	96.57
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	96.56
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	96.56
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	96.56
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	96.55
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	96.53
COG4372	499	Uncharacterized protein conserved in bacteria with	96.52
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	96.52
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	96.52
COG3596	296	Predicted GTPase [General function prediction only	96.52
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	96.51
TIGR03017	444	EpsF chain length determinant protein EpsF. Sequen	96.51
COG5019	373	CDC3 Septin family protein [Cell division and chro	96.51
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	96.5
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	96.5
cd01896	233	DRG The developmentally regulated GTP-binding prot	96.5
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	96.5
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	96.47
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	96.46
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	96.46
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	96.45
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	96.45
COG1160	444	Predicted GTPases [General function prediction onl	96.45
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	96.44
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	96.44
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	96.43
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	96.43
KOG1003	205	consensus Actin filament-coating protein tropomyos	96.43
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	96.42
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	96.42
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	96.41
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	96.4
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	96.39
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	96.39
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	96.39
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	96.38
KOG4673	961	consensus Transcription factor TMF, TATA element m	96.37
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	96.37
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	96.37
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	96.37
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	96.36
KOG1899	861	consensus LAR transmembrane tyrosine phosphatase-i	96.34
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	96.33
KOG2655	366	consensus Septin family protein (P-loop GTPase) [C	96.32
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	96.31
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	96.31
PRK04213	201	GTP-binding protein; Provisional	96.3
KOG0933	1174	consensus Structural maintenance of chromosome pro	96.3
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	96.29
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	96.28
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	96.26
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	96.26
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	96.25
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	96.24
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	96.24
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	96.24
KOG1547	336	consensus Septin CDC10 and related P-loop GTPases	96.24
PRK11281	1113	hypothetical protein; Provisional	96.23
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	96.22
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	96.2
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	96.2
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	96.19
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	96.18
PLN03118	211	Rab family protein; Provisional	96.17
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	96.17
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	96.16
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	96.15
PRK00093	435	GTP-binding protein Der; Reviewed	96.15
PF05483	786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	96.13
COG4942	420	Membrane-bound metallopeptidase [Cell division and	96.13
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	96.13
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	96.13
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	96.11
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	96.1
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	96.09
COG0486	454	ThdF Predicted GTPase [General function prediction	96.09
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	96.08
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	96.08
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	96.07
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	96.07
PF14073	178	Cep57_CLD: Centrosome localisation domain of Cep57	96.06
PRK10929	1109	putative mechanosensitive channel protein; Provisi	96.06
smart00178	184	SAR Sar1p-like members of the Ras-family of small	96.05
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	96.05
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	96.03
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	96.03
PF09787	511	Golgin_A5: Golgin subfamily A member 5; InterPro:	96.01
TIGR01000	457	bacteriocin_acc bacteriocin secretion accessory pr	96.0
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	96.0
PF14073	178	Cep57_CLD: Centrosome localisation domain of Cep57	95.99
PF14662	193	CCDC155: Coiled-coil region of CCDC155	95.99
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	95.99
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	95.97
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	95.97
PRK01156	895	chromosome segregation protein; Provisional	95.96
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	95.95
PRK12299	335	obgE GTPase CgtA; Reviewed	95.94
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	95.94
COG1162	301	Predicted GTPases [General function prediction onl	95.93
PRK03003	472	GTP-binding protein Der; Reviewed	95.91
PTZ00258	390	GTP-binding protein; Provisional	95.91
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	95.9
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	95.9
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	95.88
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	95.88
PRK03003	472	GTP-binding protein Der; Reviewed	95.88
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	95.87
PRK00093	435	GTP-binding protein Der; Reviewed	95.85
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	95.85
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	95.85
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	95.84
KOG0448	749	consensus Mitofusin 1 GTPase, involved in mitochon	95.83
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	95.81
PLN03110	216	Rab GTPase; Provisional	95.79
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	95.79
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	95.77
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	95.73
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	95.73
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	95.72
TIGR01000	457	bacteriocin_acc bacteriocin secretion accessory pr	95.69
PF05911	769	DUF869: Plant protein of unknown function (DUF869)	95.69
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	95.68
COG4477	570	EzrA Negative regulator of septation ring formatio	95.65
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	95.65
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	95.64
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	95.64
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	95.63
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	95.61
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	95.59
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	95.59
CHL00189	742	infB translation initiation factor 2; Provisional	95.57
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	95.56
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	95.56
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	95.53
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	95.52
PRK12296	500	obgE GTPase CgtA; Reviewed	95.52
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	95.51
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	95.51
PRK13796	365	GTPase YqeH; Provisional	95.5
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	95.48
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	95.45
COG3206	458	GumC Uncharacterized protein involved in exopolysa	95.44
KOG4643	1195	consensus Uncharacterized coiled-coil protein [Fun	95.44
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	95.44
PLN03108	210	Rab family protein; Provisional	95.39
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	95.39
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	95.39
PLN03188	1320	kinesin-12 family protein; Provisional	95.38
PRK12297	424	obgE GTPase CgtA; Reviewed	95.38
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	95.35
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	95.34
KOG0018	1141	consensus Structural maintenance of chromosome pro	95.31
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	95.28
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	95.28
KOG0963	629	consensus Transcription factor/CCAAT displacement	95.27
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	95.24
PRK09601	364	GTP-binding protein YchF; Reviewed	95.24
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	95.23
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	95.23
PRK09602	396	translation-associated GTPase; Reviewed	95.22
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	95.21
PF14915	305	CCDC144C: CCDC144C protein coiled-coil region	95.12
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	95.12
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	95.11
COG3096	1480	MukB Uncharacterized protein involved in chromosom	95.08
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	95.08
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	95.07
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	95.06
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	95.05
KOG0979	1072	consensus Structural maintenance of chromosome pro	95.03
COG1842	225	PspA Phage shock protein A (IM30), suppresses sigm	94.98
KOG0018	1141	consensus Structural maintenance of chromosome pro	94.97
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	94.97
KOG2485	335	consensus Conserved ATP/GTP binding protein [Gener	94.93
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	94.93
CHL00071	409	tufA elongation factor Tu	94.92
KOG1191	531	consensus Mitochondrial GTPase [Translation, ribos	94.92
KOG4643	1195	consensus Uncharacterized coiled-coil protein [Fun	94.91
COG4136	213	ABC-type uncharacterized transport system, ATPase	94.91
cd04105	203	SR_beta Signal recognition particle receptor, beta	94.91
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	94.91
PTZ00369	189	Ras-like protein; Provisional	94.88
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	94.85
PRK10869	553	recombination and repair protein; Provisional	94.84
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	94.83
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	94.83
PRK04004	586	translation initiation factor IF-2; Validated	94.8
KOG4593	716	consensus Mitotic checkpoint protein MAD1 [Cell cy	94.77
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	94.76
COG4372	499	Uncharacterized protein conserved in bacteria with	94.74
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	94.74
PRK10218	607	GTP-binding protein; Provisional	94.73
PRK09435	332	membrane ATPase/protein kinase; Provisional	94.71
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	94.71
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	94.71
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	94.71
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	94.69
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	94.67
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	94.67
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	94.66
PF06785	401	UPF0242: Uncharacterised protein family (UPF0242);	94.65
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	94.63
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	94.63
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	94.61
KOG4593	716	consensus Mitotic checkpoint protein MAD1 [Cell cy	94.6
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	94.59
PRK09866	741	hypothetical protein; Provisional	94.59
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	94.59
PF14915	305	CCDC144C: CCDC144C protein coiled-coil region	94.58
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	94.52
COG1160	444	Predicted GTPases [General function prediction onl	94.51
PF09728	309	Taxilin: Myosin-like coiled-coil protein; InterPro	94.45
PF09744	158	Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; Inte	94.45
PF04880	166	NUDE_C: NUDE protein, C-terminal conserved region;	94.39
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	94.38
PRK05433	600	GTP-binding protein LepA; Provisional	94.37
COG0218	200	Predicted GTPase [General function prediction only	94.35
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	94.34
TIGR01010	362	BexC_CtrB_KpsE polysaccharide export inner-membran	94.33
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	94.32
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	94.26
PTZ00133	182	ADP-ribosylation factor; Provisional	94.26
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	94.24
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	94.24
PRK12736	394	elongation factor Tu; Reviewed	94.22
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	94.2
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	94.2
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	94.19
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	94.18
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	94.17
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	94.15
PRK12735	396	elongation factor Tu; Reviewed	94.13
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	94.12
COG1100	219	GTPase SAR1 and related small G proteins [General	94.09
TIGR02977	219	phageshock_pspA phage shock protein A. Members of	94.07
PF05911	769	DUF869: Plant protein of unknown function (DUF869)	94.03
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	94.02
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	94.01
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	94.0
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	93.98
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	93.97
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	93.96
COG2262	411	HflX GTPases [General function prediction only]	93.92
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	93.89
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	93.88
PF04012	221	PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T	93.88
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	93.85
PF00005	137	ABC_tran: ABC transporter This structure is on hol	93.81
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	93.77
PF15397	258	DUF4618: Domain of unknown function (DUF4618)	93.7
PF10186	302	Atg14: UV radiation resistance protein and autopha	93.68
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	93.68
PLN03229	762	acetyl-coenzyme A carboxylase carboxyl transferase	93.66
PF06785	401	UPF0242: Uncharacterised protein family (UPF0242);	93.64
COG1163	365	DRG Predicted GTPase [General function prediction	93.63
PLN02318	656	phosphoribulokinase/uridine kinase	93.62
KOG0410	410	consensus Predicted GTP binding protein [General f	93.6
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	93.57
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	93.47
TIGR00235	207	udk uridine kinase. Model contains a number of lon	93.43
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	93.41
PRK01889	356	GTPase RsgA; Reviewed	93.36
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	93.33
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	93.31
KOG0086	214	consensus GTPase Rab4, small G protein superfamily	93.29
PRK12317	425	elongation factor 1-alpha; Reviewed	93.27
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	93.26
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	93.24
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	93.21
PLN03126	478	Elongation factor Tu; Provisional	93.21
PRK00300	205	gmk guanylate kinase; Provisional	93.15
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	93.15
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	93.13
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	93.08
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	93.08
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	93.01
COG1842	225	PspA Phage shock protein A (IM30), suppresses sigm	93.01
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	93.0
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	92.99
COG5185	622	HEC1 Protein involved in chromosome segregation, i	92.99
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	92.97
PRK00049	396	elongation factor Tu; Reviewed	92.96
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	92.9
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	92.9
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	92.89
PRK05306	787	infB translation initiation factor IF-2; Validated	92.89
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	92.84
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	92.82
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	92.78
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	92.74
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	92.71
KOG0979	1072	consensus Structural maintenance of chromosome pro	92.69
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	92.68
PF13555	62	AAA_29: P-loop containing region of AAA domain	92.64
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	92.62
PF09744	158	Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; Inte	92.61
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	92.59
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	92.57
TIGR00503	527	prfC peptide chain release factor 3. This translat	92.52
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	92.5
COG1341	398	Predicted GTPase or GTP-binding protein [General f	92.48
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	92.47
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	92.46
COG3172	187	NadR Predicted ATPase/kinase involved in NAD metab	92.45
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	92.45
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	92.45
cd03269	210	ABC_putative_ATPase This subfamily is involved in	92.44
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	92.44
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	92.43
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	92.42
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	92.42
PLN03127	447	Elongation factor Tu; Provisional	92.4
PLN00223	181	ADP-ribosylation factor; Provisional	92.39
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	92.33
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	92.33
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	92.32
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	92.31
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	92.3
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	92.28
PF00485	194	PRK: Phosphoribulokinase / Uridine kinase family;	92.28
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	92.28
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	92.27
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	92.27
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	92.25
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	92.24
PLN02939	977	transferase, transferring glycosyl groups	92.23
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	92.21
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	92.21
PF13514	1111	AAA_27: AAA domain	92.21
cd03216	163	ABC_Carb_Monos_I This family represents the domain	92.21
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	92.21
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	92.2
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	92.2
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	92.2
TIGR00485	394	EF-Tu translation elongation factor TU. This align	92.19
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	92.19

>PF02263 GBP: Guanylate-binding protein, N-terminal domain; InterPro: IPR015894 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma

Probab=100.00  E-value=2e-65  Score=537.19  Aligned_cols=259  Identities=47%  Similarity=0.868  Sum_probs=227.9

Q ss_pred             CCceeeCHHHHHHhhccCCCEEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEE
Q 004698           51 KGKFRMDPEAVAALQLVKEPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNL  130 (736)
Q Consensus        51 ~~~l~l~~eAl~~L~~i~~~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v  130 (736)
                      +++|.||++|+++|..++.||+||||+|+||||||||||+|+|...||+||++++|||+|||||+.|.    +.|++++|
T Consensus         1 ~~~~~~~~~al~~l~~~~~~v~vvsi~G~~rtGKSfLln~l~~~~~gF~~~~~~~~~T~Giw~w~~~~----~~~~~~~v   76 (260)
T PF02263_consen    1 DNKLELNEEALEILQQIDQPVAVVSIVGPYRTGKSFLLNQLLGPQSGFSWGPTVEPCTKGIWMWSEPL----PDGEKVAV   76 (260)
T ss_dssp             TTEEEE-HHHHHHHCTTTSBEEEEEEEEETTSSHHHHHHHHCCBSSSSESSSCSSST-SCEEEECCE-----TTSTCEEE
T ss_pred             CCeEEECHHHHHHHhcCCCCEEEEEeecCCccchHHHHHHHhcccccccccCCCCCCCcceeeeeccc----ccccceeE
Confidence            47899999999999989999999999999999999999999999999999999999999999999994    45788999


Q ss_pred             EEeecCCCcccC-CCCccchHHHHHhhhccceEEEccCCCCchHHhhhhHHHHHHHHHHHHHhcCCCCCCCcccccCCeE
Q 004698          131 LLLDSEGIDAYD-QTGTYSTQIFSLAVLLSSMFIYNQMGGIDESAIDRLSLVTQMTKHIRIRASGGKTTPSELGQFSPIF  209 (736)
Q Consensus       131 ~llDteG~~~~~-~~~~~d~~IFaLa~LLSS~~IyN~~g~i~e~~l~~L~~v~el~~~i~~k~~~~~~~~~e~~~~~P~f  209 (736)
                      +||||||++++. .+.++|++||+|++||||++|||++|.|++++|++|+++++++++|+++... .....++..+||+|
T Consensus        77 ~llDteG~~~~~~~~~~~d~~if~Ls~LLSS~~IyN~~~~i~~~~l~~L~~~~~l~~~i~~~~~~-~~~~~~~~~~fp~l  155 (260)
T PF02263_consen   77 VLLDTEGLGDVEQSDEKYDAKIFALSMLLSSVLIYNSMGNIDEDDLDQLELFTELAKHIRVKYGD-SADSEDLGKPFPSL  155 (260)
T ss_dssp             EEEEEECBTTTTCCCCHHCHHHHHHHHHH-SEEEEEECSSSSHHHHHCCHHHHHHHHHHHHTHHH-HHHHHCTTTTCEEE
T ss_pred             EEecchhccccccCcccccHHHHHHHHHHhCceeeCCCCccchhHHHHHHHHHHHHHHHHHhccc-ccchhhhcccchHH
Confidence            999999998854 4567899999999999999999999999999999999999999999876321 11223456789999


Q ss_pred             EEEeecccccccccCccCChHHHHHHhhccccCCChhhhhhhHHHHHHHhhCCCCceEeccCCCcChhhhhcccCCCcCC
Q 004698          210 VWLLRDFYLDLVEDNRKITPRDYLEIALRPVQGSGRDIAAKNEIRDSIRALFPDRECFTLVRPLSNENELQRLDQISLDR  289 (736)
Q Consensus       210 ~wlvRDf~l~~~~~g~~~t~~~yLe~~L~~~~g~~~~~~~~n~ir~~i~~~F~~~~cf~l~~P~~~~~~l~~l~~~~~~~  289 (736)
                      +||||||++++..+|+.+|+++||+++|+...|.++.+..+|.+|++|++||++++||+||||+.++..++++++++.++
T Consensus       156 ~wlvRDf~~~~~~~~~~~t~~eyLe~~L~~~~~~~~~~~~~N~iR~~I~~~F~~~~cf~Lp~P~~~~~~l~~l~~l~~~~  235 (260)
T PF02263_consen  156 VWLVRDFSLELEDDGGKITPQEYLEQALKPESGQDEEIQERNKIRECIRSCFPSRDCFTLPHPGSDVDKLQNLDGLSLDD  235 (260)
T ss_dssp             EEEEECE-SCTCCTTECHHHHHHHHHHCCSSTSSSCCCCCHHHHHHHHHHHECCEEEEEEE-SSCCCCC-TCGCCCBGGG
T ss_pred             HHHHhhccchhhhccCCCCHHHHHHHHHhcccchhHHHHHhhHHHHHHHHHCCCCeEEEecCCCchhhhccCcccCChhh
Confidence            99999999998888999999999999999888888888899999999999999999999999999999889999999999


Q ss_pred             CChHHHHHHHHHHHHHhccCCcccc
Q 004698          290 LRPEFRAGLDALTKFVFERTRPKQV  314 (736)
Q Consensus       290 l~~eF~~~l~~l~~~i~~~~~pK~~  314 (736)
                      |+|+|+++++.||++|++...+|++
T Consensus       236 L~~eF~~~l~~l~~~i~~~~~~k~~  260 (260)
T PF02263_consen  236 LDPEFVEQLDELVKYIFSSAKVKTL  260 (260)
T ss_dssp             S-HHHHHHHHHHHHHHHCCT---BE
T ss_pred             CCHHHHHHHHHHHHHHhccCCcccC
Confidence            9999999999999999998888763

GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function, and an alpha-helical finger-like C-terminal domain (IPR003191 from INTERPRO). Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3QOF_A 3Q5E_C 3QNU_A 3Q5D_A 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.

>KOG2037 consensus Guanylate-binding protein [General function prediction only]

Probab=100.00  E-value=1.3e-46  Score=419.78  Aligned_cols=468  Identities=23%  Similarity=0.291  Sum_probs=405.6

Q ss_pred             CeeEEEeCCCCceeeCHHHHHHhhccCCCEEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccc
Q 004698           42 PIRLVYCDEKGKFRMDPEAVAALQLVKEPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRT  121 (736)
Q Consensus        42 pi~Lv~~d~~~~l~l~~eAl~~L~~i~~~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~  121 (736)
                      |.+ ++.+.+|+|.+|| |+.+|+.+.+||+||+|+|.||+||||+||.++|++.||+++.++.|||+||||||.|++  
T Consensus         5 p~~-~~~~~~~~l~~~p-a~~~l~~~~~p~~Vv~i~g~~~~gksfiln~la~~~~gf~~~s~~~~~~~~~w~w~~p~~--   80 (552)
T KOG2037|consen    5 PML-LYENENGQLKVNP-ALEILQAIKQPVAVVAIVGLYRTGKSFILNQLAGKRIGFSVASTDKPVTKGIWMWCVPHG--   80 (552)
T ss_pred             chh-hhhccccccccCc-chhHHhhccCCceEEEEEEEEcCCCceehhhhHhhhcCCCcccccccceeeEEEEEeecC--
Confidence            344 4457789999999 999999999999999999999999999999999999999999999999999999999986  


Q ss_pred             cCCCCceEEEEeecCCCcccCCCCccchHHHHHhhhccceEEEccCCCCchHHhhhhHHHHHHHHHHHHHhcCC-----C
Q 004698          122 ALDGTEYNLLLLDSEGIDAYDQTGTYSTQIFSLAVLLSSMFIYNQMGGIDESAIDRLSLVTQMTKHIRIRASGG-----K  196 (736)
Q Consensus       122 ~~~g~~~~v~llDteG~~~~~~~~~~d~~IFaLa~LLSS~~IyN~~g~i~e~~l~~L~~v~el~~~i~~k~~~~-----~  196 (736)
                        ++..++++|+||||+   ..+...+.|||+++.|+||+++||+.|.|+..+|.++++|+++++.+++.+...     -
T Consensus        81 --k~~~~~l~Lld~eg~---~~~~~~~~w~~~~~~l~~~~~~~~s~~~~~~~~~~~~~~~~~~~e~~k~~~~l~~~~~a~  155 (552)
T KOG2037|consen   81 --KSFLLNLVLLDTEGL---KGDNENDDWIFALAPLLSSTWVYGSEGTINGIAMWQLPFVTELTEGIKVASSLMDTQGAF  155 (552)
T ss_pred             --Cccchhhhhhccccc---cCCccchhhhhccchhhcceeeccCCcccchheecccceeeecCCcceeccccccccccc
Confidence              477799999999998   345677999999999999999999999999999999999999999888766421     1


Q ss_pred             CCCCcccccCCeEEEEeecccccccccCccCChHHHHHHhhccccCCChhhhhhhHHHHHHHhhCCCCceEeccCCCcCh
Q 004698          197 TTPSELGQFSPIFVWLLRDFYLDLVEDNRKITPRDYLEIALRPVQGSGRDIAAKNEIRDSIRALFPDRECFTLVRPLSNE  276 (736)
Q Consensus       197 ~~~~e~~~~~P~f~wlvRDf~l~~~~~g~~~t~~~yLe~~L~~~~g~~~~~~~~n~ir~~i~~~F~~~~cf~l~~P~~~~  276 (736)
                      ++..++..+||.|.|..|||++++..+++++++++|++..|....|           |                      
T Consensus       156 ~~~~~~~~~~p~fa~tt~~~slqi~~~~q~i~ed~l~~l~l~~~~g-----------~----------------------  202 (552)
T KOG2037|consen  156 DDQSTFRSCFPDFALTTMDSSLQIYNDSQNIQEDDLQHLSLFTEYG-----------R----------------------  202 (552)
T ss_pred             cccccHHHhcchhhceeeeeehhhhcccCcCCHHHHHHHHHHHHHH-----------H----------------------
Confidence            3455677899999999999999999999999999999988875433           1                      


Q ss_pred             hhhhcccCCCcCCCChHHHHHHHHHHHHHhccCCcccc-CCcccchhhHHHHHHHHHHHHhcC-CCCCccchHHHHHHHH
Q 004698          277 NELQRLDQISLDRLRPEFRAGLDALTKFVFERTRPKQV-GATVLTGPVLIGITESYLDAINNG-AVPTISSSWQSVEEAE  354 (736)
Q Consensus       277 ~~l~~l~~~~~~~l~~eF~~~l~~l~~~i~~~~~pK~~-~g~~ltg~~l~~l~~~yv~ain~g-~vP~i~s~~~~~~e~~  354 (736)
                      ..+.++...|.++|.+.|+.+...+|.+++.....|.+ +|..++|+.+..|...|+.+++.+ .+||..++..+++.++
T Consensus       203 ~~l~~~~~kp~q~L~~~~~~~s~~~c~~~~~~~~~~~l~~~l~v~~~~~~el~~~r~~~~~~~~d~~c~~~~~~~l~~~~  282 (552)
T KOG2037|consen  203 LALAHLFKKPFQDLKFLVRDQSFPFCSYIGEHGGTKNLDNRLKVNGPQLEELVQLRVHARSCFEDLPCFLNPHPGLAVAE  282 (552)
T ss_pred             HHHHHhccCcHHHHHHHHHHhhhhhhHHHHHhccccccccceeecccchHHHHHHHHHHHhhccCcchhhcCchhhhccc
Confidence            22344445678889999999999999999998889998 678899999999999999999998 9999999999999999


Q ss_pred             HHHHHHHHHHHHHhhcccC-C--CC-ChHHHHHHHHHHHHHHHHHhhhcccCChhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 004698          355 CRRAYDSATETYMSTFDRS-K--PP-EEVALGEAHEAAVQKALAVYNAGAVGVGLARKKYEGLLQKFFRKAFEDHKKNVY  430 (736)
Q Consensus       355 ~~~a~~~A~~~Y~~~m~~~-~--p~-~e~~L~~~h~~~~~~Al~~F~~~s~g~~~~~~~~~~~L~~~i~~~~e~~~~~n~  430 (736)
                      +..+++.+.++|...|.+. .  |. ...++...|..+..++...|....|.  +..+-|++++-..+..-.. +++.|.
T Consensus       283 n~~~~~~~~~~~~~~~~ql~~~~p~~~~q~~l~~~~~~~~~~t~~~~~e~fk--~y~~i~q~~~g~~lp~pks-~l~~~a  359 (552)
T KOG2037|consen  283 NPAFDGKLEDHYNQFMGQLKVELPNLLLQELLDEKEISGREVTCREMKEYFK--AYDKIFQKKLGETLPGPKS-MLKANA  359 (552)
T ss_pred             CchhhhhHHHHHHHHHHHHhhhhhHHhhhhhccccccCccchhHHHHHHHHH--HHHHHhhHhhhhhCcCccc-HHHHHH
Confidence            9999999999999999876 3  32 23678888998888999988888774  6777888888888877666 888998


Q ss_pred             HHHHHHHHHHHHH----HHHHHHhh-ccCCCcchhHHHHHHHHHHHHHhccc-CCCchhHHHHHHHH--HhhhhhHHHHH
Q 004698          431 MEADIRCSSAIQS----MERKLRAA-CHSSDASIDNVVKVLDGLISEYETSC-HGPGKWQKLATFLQ--QSSEGPILDLV  502 (736)
Q Consensus       431 ~~s~~~C~~~l~~----le~~l~~~-~~~~~~~~~~~~~~~~~ll~~Y~~~~-~Gp~K~~~L~~fLq--~~~~~~il~~~  502 (736)
                      .++...|....+.    +.+.+..+ .+..++++..+...+..+...|...+ +|.+..++...|++  ..+...++..+
T Consensus       360 ea~~l~~va~ak~~~~~~~Eev~~G~~~~~~s~L~~~~d~~k~~a~~~~~e~rK~ig~~e~~~~~lq~LE~v~~~l~~~~  439 (552)
T KOG2037|consen  360 EASSLAAVAAAKDIYGPLMEEVKGGDIYLSPSGLNLKHDKVKELALKYFTEPRKGIGAEEVCQRYLQSLESVEEELLQTD  439 (552)
T ss_pred             HHhhHHHHHHHHHHHhhhhhhhhcCceeecccHHHHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999988875    55666667 77888899999999999988888776 66777888999998  47788999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698          503 KRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDK  555 (736)
Q Consensus       503 ~~l~~~i~~e~~~L~~k~es~e~e~~~lk~~Le~~e~~~~e~~k~~e~~In~l  555 (736)
                      +..++. .+.....|..+++....+..+....-.-...+....+.+++.+...
T Consensus       440 ~~~~~s-~~~~~~~r~~A~a~~~~~~~~~~~~~~~~~~me~~a~~~~~~~~q~  491 (552)
T KOG2037|consen  440 QALTES-KKLFLAARTPAEAAAKEAILLILSGLEGFIGMEIAARLIEETMKQL  491 (552)
T ss_pred             HHHhcc-chhHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999988 8889999999999999988888888887777788778888777765

>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain

Probab=100.00  E-value=5.6e-45  Score=374.52  Aligned_cols=219  Identities=38%  Similarity=0.585  Sum_probs=190.9

Q ss_pred             ccCCCEEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcccCCCC
Q 004698           66 LVKEPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYDQTG  145 (736)
Q Consensus        66 ~i~~~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~~~~~  145 (736)
                      .++.||+||||+|++|+|||||||+|+|..+||+|+++..+||+|||||+.|+..    |.++.|+||||||+++.+++.
T Consensus         2 ~~~~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~----~~~~~v~~lDteG~~~~~~~~   77 (224)
T cd01851           2 KAGFPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKL----GKEHAVLLLDTEGTDGRERGE   77 (224)
T ss_pred             CCCCCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccC----CCcceEEEEecCCcCccccCc
Confidence            3578999999999999999999999999988999999999999999999999864    456789999999999998888


Q ss_pred             -ccchHHHHHhhhccceEEEccCCCCchHHhhhhHHHHHHHHHHHHHhcCCCCCCCcccccCCeEEEEeecccccccccC
Q 004698          146 -TYSTQIFSLAVLLSSMFIYNQMGGIDESAIDRLSLVTQMTKHIRIRASGGKTTPSELGQFSPIFVWLLRDFYLDLVEDN  224 (736)
Q Consensus       146 -~~d~~IFaLa~LLSS~~IyN~~g~i~e~~l~~L~~v~el~~~i~~k~~~~~~~~~e~~~~~P~f~wlvRDf~l~~~~~g  224 (736)
                       .+|++||+|++||||++|||+++.+++.+++.|+++++++...     ++.........++|.|+||||||++.....+
T Consensus        78 ~~~~~~~~~l~~llss~~i~n~~~~~~~~~~~~l~~~~~~~~~~-----~~~~~~~~~~~~~p~ll~vvRD~~~~~~~~~  152 (224)
T cd01851          78 FEDDARLFALATLLSSVLIYNSWETILGDDLAALMGLLKTTLEV-----LGLAGLTEFEKPKPLLLFVVRDFSLDTPLEN  152 (224)
T ss_pred             hhhhhHHHHHHHHHhCEEEEeccCcccHHHHHHHHHHHHHHHHh-----hhhhhhhhcccCCCceEEEEecCcCCccccc
Confidence             8999999999999999999999999999999999999886211     1111223456789999999999999877655


Q ss_pred             ccCChHHHHHHhhccccCCChhhhhhhHHHHHHHhhC--CCCceEeccCCCcChhhhhcccCCCcCCCChHHHHHHHHHH
Q 004698          225 RKITPRDYLEIALRPVQGSGRDIAAKNEIRDSIRALF--PDRECFTLVRPLSNENELQRLDQISLDRLRPEFRAGLDALT  302 (736)
Q Consensus       225 ~~~t~~~yLe~~L~~~~g~~~~~~~~n~ir~~i~~~F--~~~~cf~l~~P~~~~~~l~~l~~~~~~~l~~eF~~~l~~l~  302 (736)
                      ..++            .+.....+..|.+|.+|+.+|  ++++||++|+|+.+...+++  .++..+++|+|.++++.|+
T Consensus       153 ~~~~------------~~~~~~~~~~~~ir~~l~~~f~~~~~~cf~l~~p~~~~~~~~~--~~~~~~l~~eF~~~l~~L~  218 (224)
T cd01851         153 LDIT------------EGRETLIEDLNKIWSSIRKPFENPPIDCFFLPRPGLLHHLLQN--EGRLKLLPPEFLEALKELR  218 (224)
T ss_pred             cccc------------cccchhHHHHHHHHHHHHhhccCCcchheeccccccchhhccc--ccchhhCCHHHHHHHHHHH
Confidence            4443            344556788999999999999  99999999999999888877  6889999999999999999


Q ss_pred             HHHhc
Q 004698          303 KFVFE  307 (736)
Q Consensus       303 ~~i~~  307 (736)
                      +++++
T Consensus       219 ~~~~~  223 (224)
T cd01851         219 DRFFS  223 (224)
T ss_pred             HHhcC
Confidence            99875

Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein

>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma

Probab=100.00  E-value=1e-35  Score=318.30  Aligned_cols=243  Identities=32%  Similarity=0.478  Sum_probs=214.2

Q ss_pred             CCcccchhhHHHHHHHHHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHhhcccC-C-CCC-hHHHHHHHHHHHHH
Q 004698          315 GATVLTGPVLIGITESYLDAINNGAVPTISSSWQSVEEAECRRAYDSATETYMSTFDRS-K-PPE-EVALGEAHEAAVQK  391 (736)
Q Consensus       315 ~g~~ltg~~l~~l~~~yv~ain~g~vP~i~s~~~~~~e~~~~~a~~~A~~~Y~~~m~~~-~-p~~-e~~L~~~h~~~~~~  391 (736)
                      ||.+|||++|++|+++||+|||+|.||||+|+|.+|++++|.+|++.|+.+|...|+.. . |.+ .++|...|..|..+
T Consensus         1 gG~~vtG~~L~~L~~~Yv~aIn~G~vP~iesa~~~~~e~e~~~A~~~A~~~Y~~~m~~~~~~P~~~~~eL~~~H~~~~~~   80 (297)
T PF02841_consen    1 GGITVTGPMLAELVKSYVDAINSGSVPCIESAWQAVAEAENRAAVEKAVEHYEEQMEQRVKLPTETLEELLELHEQCEKE   80 (297)
T ss_dssp             TSEB-BHHHHHHHHHHHHHHHHTTS--BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--SS-SSHHHHHHHHHHHHHH
T ss_pred             CCcccccHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHH
Confidence            69999999999999999999999999999999999999999999999999999999986 3 444 58999999999999


Q ss_pred             HHHHhhhcccCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhhccCCCcchhHHHHHHH
Q 004698          392 ALAVYNAGAVGVGLARKKYEGLLQKFFRKAFEDHKKNVYMEADIRCSSAIQS----MERKLRAACHSSDASIDNVVKVLD  467 (736)
Q Consensus       392 Al~~F~~~s~g~~~~~~~~~~~L~~~i~~~~e~~~~~n~~~s~~~C~~~l~~----le~~l~~~~~~~~~~~~~~~~~~~  467 (736)
                      |+.+|++++||+  ..++|+++|...|.+.|++|++.|+.+|..+|+++|+.    |+++|+.++|.++|+|+.|++.++
T Consensus        81 A~~~F~~~s~~d--~~~~~~~~L~~~i~~~~~~~~~~N~~~s~~~C~~~l~~l~~~le~~l~~~~~~~~gg~~~~~~~~~  158 (297)
T PF02841_consen   81 ALEVFMKRSFGD--EDQKYQKKLMEQIEKKFEEFCKQNEEASEKKCQALLQELFQPLEEKLKQGCYSKPGGYQLFLKELD  158 (297)
T ss_dssp             HHHHHHHH------GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSSTTHHHHHHHHHH
T ss_pred             HHHHHHHHhcCc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Confidence            999999999984  77899999999999999999999999999999999987    999999999999999999999999


Q ss_pred             HHHHHHhccc-CCCchhHHHHHHHHH--hhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 004698          468 GLISEYETSC-HGPGKWQKLATFLQQ--SSEGPILDLVKRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEY  544 (736)
Q Consensus       468 ~ll~~Y~~~~-~Gp~K~~~L~~fLq~--~~~~~il~~~~~l~~~i~~e~~~L~~k~es~e~e~~~lk~~Le~~e~~~~e~  544 (736)
                      .++.+|+..| +||....+|..||+.  .+.+.|+++++.+++. ++++...+.+.+.++.+...+...++..++.+.+.
T Consensus       159 ~~~~~Y~~~p~Kg~ka~evL~~fl~~~~~~~~~ilq~d~~L~~~-ek~~~~~~~k~e~~e~e~~~l~e~~~~~~~~le~~  237 (297)
T PF02841_consen  159 ELEKEYEQEPGKGVKAEEVLQEFLQSKESMENSILQADQQLTEK-EKEIEEEQAKAEAAEKEKEKLEEKQKEQEQMLEQQ  237 (297)
T ss_dssp             HHHHHHHHSS---TTHHHHHHHHHHHCHHHHHHHHHH-TTS-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999985 788888889999984  5789999999999988 99999999999999999999999999999998888


Q ss_pred             HHHHHHHHHHHHHHHH
Q 004698          545 LKRYDDAINDKKKLAD  560 (736)
Q Consensus       545 ~k~~e~~In~lkk~~e  560 (736)
                      .++|+++++++...++
T Consensus       238 ~~~~ee~~~~L~ekme  253 (297)
T PF02841_consen  238 ERSYEEHIKQLKEKME  253 (297)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            8999999988754443

GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.

>KOG2037 consensus Guanylate-binding protein [General function prediction only]

Probab=99.97  E-value=2.9e-30  Score=288.84  Aligned_cols=382  Identities=18%  Similarity=0.185  Sum_probs=312.7

Q ss_pred             CCCCCeeEEEe--CCCCceeeCHHHHHHhh----ccCCCEEEEEeeCCCCCChhHHHHHHhCC-----------------
Q 004698           38 GPARPIRLVYC--DEKGKFRMDPEAVAALQ----LVKEPIGVVSVCGRARQGKSFILNQLLGR-----------------   94 (736)
Q Consensus        38 ~~~~pi~Lv~~--d~~~~l~l~~eAl~~L~----~i~~~v~vVsv~G~~rtGKS~LlN~l~~~-----------------   94 (736)
                      ..|.||+.|..  ..++.|.+|+.|.+.+-    ..+.||++++++|+++.||||++|++|-.                 
T Consensus        29 ~~p~~Vv~i~g~~~~gksfiln~la~~~~gf~~~s~~~~~~~~~w~w~~p~~k~~~~~l~Lld~eg~~~~~~~~~w~~~~  108 (552)
T KOG2037|consen   29 KQPVAVVAIVGLYRTGKSFILNQLAGKRIGFSVASTDKPVTKGIWMWCVPHGKSFLLNLVLLDTEGLKGDNENDDWIFAL  108 (552)
T ss_pred             cCCceEEEEEEEEcCCCceehhhhHhhhcCCCcccccccceeeEEEEEeecCCccchhhhhhccccccCCccchhhhhcc
Confidence            56777777766  56688999999999874    24689999999999999999999998732                 


Q ss_pred             --CCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcccCCCCccchHHHHHhhhccceEEEccCCCCch
Q 004698           95 --SSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYDQTGTYSTQIFSLAVLLSSMFIYNQMGGIDE  172 (736)
Q Consensus        95 --~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~~~~~~~d~~IFaLa~LLSS~~IyN~~g~i~e  172 (736)
                        ..||.|..+..+.|.|||||..||....++|.++++.++||+|..+...+.......|++++++||+.|||....|++
T Consensus       109 ~~l~~~~~~~~s~~~~~~~~~~~~~~~~~~~e~~k~~~~l~~~~~a~~~~~~~~~~~p~fa~tt~~~slqi~~~~q~i~e  188 (552)
T KOG2037|consen  109 APLLSSTWVYGSEGTINGIAMWQLPFVTELTEGIKVASSLMDTQGAFDDQSTFRSCFPDFALTTMDSSLQIYNDSQNIQE  188 (552)
T ss_pred             chhhcceeeccCCcccchheecccceeeecCCcceeccccccccccccccccHHHhcchhhceeeeeehhhhcccCcCCH
Confidence              246888888899999999999999888899999999999999976555555667889999999999999999999999


Q ss_pred             HHhhhhHHHHHHHHHHHHHhcCCCCCCCcccccCCeEEEEeecccccccccCccCChHHHHHHhhccccCCChhhhhhhH
Q 004698          173 SAIDRLSLVTQMTKHIRIRASGGKTTPSELGQFSPIFVWLLRDFYLDLVEDNRKITPRDYLEIALRPVQGSGRDIAAKNE  252 (736)
Q Consensus       173 ~~l~~L~~v~el~~~i~~k~~~~~~~~~e~~~~~P~f~wlvRDf~l~~~~~g~~~t~~~yLe~~L~~~~g~~~~~~~~n~  252 (736)
                      +++++|++++++.....-.         .+...+-.+.+++|||+.+....-..-+.+..|.+.|.   ..++..++...
T Consensus       189 d~l~~l~l~~~~g~~~l~~---------~~~kp~q~L~~~~~~~s~~~c~~~~~~~~~~~l~~~l~---v~~~~~~el~~  256 (552)
T KOG2037|consen  189 DDLQHLSLFTEYGRLALAH---------LFKKPFQDLKFLVRDQSFPFCSYIGEHGGTKNLDNRLK---VNGPQLEELVQ  256 (552)
T ss_pred             HHHHHHHHHHHHHHHHHHH---------hccCcHHHHHHHHHHhhhhhhHHHHHhcccccccccee---ecccchHHHHH
Confidence            9999999999997743210         11222336789999999876542111234455666654   34456788888


Q ss_pred             HHHHHHhhCCCCceEeccCCCcChhhhhcccCCCcCCCChHHHHHHHHHHHHHh--ccCCccccCCcccchhhHHHHHHH
Q 004698          253 IRDSIRALFPDRECFTLVRPLSNENELQRLDQISLDRLRPEFRAGLDALTKFVF--ERTRPKQVGATVLTGPVLIGITES  330 (736)
Q Consensus       253 ir~~i~~~F~~~~cf~l~~P~~~~~~l~~l~~~~~~~l~~eF~~~l~~l~~~i~--~~~~pK~~~g~~ltg~~l~~l~~~  330 (736)
                      +|++++.||-++.||.+|+|+.....++..++ ...++.+.|..++...+....  ....+|.++|..+|+..+.++++.
T Consensus       257 ~r~~~~~~~~d~~c~~~~~~~l~~~~n~~~~~-~~~~~~~~~~~ql~~~~p~~~~q~~l~~~~~~~~~~t~~~~~e~fk~  335 (552)
T KOG2037|consen  257 LRVHARSCFEDLPCFLNPHPGLAVAENPAFDG-KLEDHYNQFMGQLKVELPNLLLQELLDEKEISGREVTCREMKEYFKA  335 (552)
T ss_pred             HHHHHHhhccCcchhhcCchhhhcccCchhhh-hHHHHHHHHHHHHhhhhhHHhhhhhccccccCccchhHHHHHHHHHH
Confidence            99999999999999999999976554444432 556778899999875555444  357888899999999999999999


Q ss_pred             HHHHHh---cCCCCCccchHHHHHHHHHHHHHHHHHHHHHhhcccCC----CCChHHHHHHHHHHHHHHHHHhhhc-c-c
Q 004698          331 YLDAIN---NGAVPTISSSWQSVEEAECRRAYDSATETYMSTFDRSK----PPEEVALGEAHEAAVQKALAVYNAG-A-V  401 (736)
Q Consensus       331 yv~ain---~g~vP~i~s~~~~~~e~~~~~a~~~A~~~Y~~~m~~~~----p~~e~~L~~~h~~~~~~Al~~F~~~-s-~  401 (736)
                      |...+.   ...+|.+.++..+.+++.+.+++..|...|...|++.+    ...+..|...|...+..|+.+|... + +
T Consensus       336 y~~i~q~~~g~~lp~pks~l~~~aea~~l~~va~ak~~~~~~~Eev~~G~~~~~~s~L~~~~d~~k~~a~~~~~e~rK~i  415 (552)
T KOG2037|consen  336 YDKIFQKKLGETLPGPKSMLKANAEASSLAAVAAAKDIYGPLMEEVKGGDIYLSPSGLNLKHDKVKELALKYFTEPRKGI  415 (552)
T ss_pred             HHHHhhHhhhhhCcCcccHHHHHHHHhhHHHHHHHHHHHhhhhhhhhcCceeecccHHHHHHHHHHHHHHHHHhhhhhhh
Confidence            999999   56899999999999999999999999999999998864    3467899999999999999999886 4 8


Q ss_pred             CChhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698          402 GVGLARKKYEGLLQKFFRKAFEDHKKNVYME  432 (736)
Q Consensus       402 g~~~~~~~~~~~L~~~i~~~~e~~~~~n~~~  432 (736)
                      |..++.+.|.+.|+..+...+..++..+...
T Consensus       416 g~~e~~~~~lq~LE~v~~~l~~~~~~~~~s~  446 (552)
T KOG2037|consen  416 GAEEVCQRYLQSLESVEEELLQTDQALTESK  446 (552)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            8888899999999988888888777766443

>PF05879 RHD3: Root hair defective 3 GTP-binding protein (RHD3); InterPro: IPR008803 This family consists of several eukaryotic root hair defective 3 like GTP-binding proteins

Probab=99.96  E-value=9.7e-27  Score=274.87  Aligned_cols=356  Identities=19%  Similarity=0.263  Sum_probs=252.7

Q ss_pred             eCCCCCChhHHHHHHhCCCCcccccC--CCCCccceEEeeccccccccCCCCceEEEEeecCCCcccCCC----CccchH
Q 004698           77 CGRARQGKSFILNQLLGRSSGFQVAS--THRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYDQT----GTYSTQ  150 (736)
Q Consensus        77 ~G~~rtGKS~LlN~l~~~~~gF~~~~--~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~~~~----~~~d~~  150 (736)
                      +|+++||||||||.|||++  |.+.+  +.+.||+||||...+...    ...-.+++||+||.++.+++    .++.+.
T Consensus         1 ~g~qssgkstlln~lf~t~--f~~m~~~~r~qtt~gi~~~~~~~~~----~~~~~~~v~d~eg~d~~er~~~~~fe~~~a   74 (742)
T PF05879_consen    1 FGSQSSGKSTLLNHLFGTQ--FDVMDESGRQQTTKGIWMAKAKEVE----SSESNILVLDVEGTDGRERGEDQDFERKSA   74 (742)
T ss_pred             CCCCCCcHHHHHHHHHCCC--ccccccccccccchhhHHHhccccc----cCCCceEEEeCCCCCchhhccccchHHHHH
Confidence            5999999999999999998  99976  467899999998765421    11246889999999988764    345788


Q ss_pred             HHHHhhhccceEEEccC----CCCchHHhhhhHHHHHHHHHHHHHhcCCCCCCCcccccCCeEEEEeecccccccccCcc
Q 004698          151 IFSLAVLLSSMFIYNQM----GGIDESAIDRLSLVTQMTKHIRIRASGGKTTPSELGQFSPIFVWLLRDFYLDLVEDNRK  226 (736)
Q Consensus       151 IFaLa~LLSS~~IyN~~----g~i~e~~l~~L~~v~el~~~i~~k~~~~~~~~~e~~~~~P~f~wlvRDf~l~~~~~g~~  226 (736)
                      +||||+  |.++|.|++    |..+.+++.-|..|.++.-.+..++  .      -....+.++||||||+-.-..+.-.
T Consensus        75 lf~la~--s~~~iiN~w~~~iG~~~~an~~lLktvfevnl~lf~~~--~------~~~~k~~llfviRD~~~~tp~e~l~  144 (742)
T PF05879_consen   75 LFALAV--SDVLIINMWEHDIGRYQGANMGLLKTVFEVNLQLFGKS--K------SNDRKTLLLFVIRDHTGVTPLENLE  144 (742)
T ss_pred             HHHHHh--hhheeeehhhhhhhhhcccchHHHHHHHHHHHHHHhhc--c------cCCCCceEEEEEeeCCCCCcHHHHH
Confidence            999988  999999985    8888888999999988854443222  1      0124678999999998411001101


Q ss_pred             CChHHHHHHhhccccCCChhhhhhhHHHHHHHhhCCCCceEeccCCCcChhhhhcccCCCcCCCChHHHHHHHHHHHHHh
Q 004698          227 ITPRDYLEIALRPVQGSGRDIAAKNEIRDSIRALFPDRECFTLVRPLSNENELQRLDQISLDRLRPEFRAGLDALTKFVF  306 (736)
Q Consensus       227 ~t~~~yLe~~L~~~~g~~~~~~~~n~ir~~i~~~F~~~~cf~l~~P~~~~~~l~~l~~~~~~~l~~eF~~~l~~l~~~i~  306 (736)
                      -|-.+.|++++.....+..   -.+   ..|..|| ++..++|||....               .++|.+++..|++++.
T Consensus       145 ~~l~~dl~~iW~~i~kP~~---~~~---~~~~d~F-d~~f~~LpH~~~~---------------~e~F~~~v~~Lr~rf~  202 (742)
T PF05879_consen  145 ETLREDLEKIWDSISKPEG---FEN---SSLSDFF-DLEFTALPHKILQ---------------PEKFNEDVAKLRQRFV  202 (742)
T ss_pred             HHHHHHHHHHHHhccCccc---ccC---CChhhee-eeeeeccCchhhh---------------HHHHHHHHHHHHHHHh
Confidence            1233444455544322111   001   3588999 8999999996543               3579999999999998


Q ss_pred             cc-------CCccccCCcccchhhHHHHHHHHHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHhhcccCC-----
Q 004698          307 ER-------TRPKQVGATVLTGPVLIGITESYLDAINNGAVPTISSSWQSVEEAECRRAYDSATETYMSTFDRSK-----  374 (736)
Q Consensus       307 ~~-------~~pK~~~g~~ltg~~l~~l~~~yv~ain~g~vP~i~s~~~~~~e~~~~~a~~~A~~~Y~~~m~~~~-----  374 (736)
                      ..       .+|.  ..+.|++.+|..|++..|+.|.++.-..+++.-..||+..|.+++.+++..|...+....     
T Consensus       203 ~~~~~~~~~~~~~--y~~~iP~dG~~~y~~~iW~~I~~nkDLDLPtqq~mlA~fRCdEI~~e~l~~f~~~~~~~~~~~~~  280 (742)
T PF05879_consen  203 DSKNIEDGLFKPE--YHRRIPADGFSMYAENIWEQIKNNKDLDLPTQQEMLAQFRCDEIANEVLEEFDEDIKELIEKWSE  280 (742)
T ss_pred             ccCcCCCCCCchh--hcCCCChHHhHHHHHHHHHHHHhCccCCCCcHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhh
Confidence            75       2222  334678888999999999999999777888888999999999999999999998754311     


Q ss_pred             ------CCChHHHHHHHHHHHHHHHHHhhhcccC-ChhhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 004698          375 ------PPEEVALGEAHEAAVQKALAVYNAGAVG-VGLARKKYEGLLQKFFRKAFED-HKKNVYMEADIRCSSAIQSMER  446 (736)
Q Consensus       375 ------p~~e~~L~~~h~~~~~~Al~~F~~~s~g-~~~~~~~~~~~L~~~i~~~~e~-~~~~n~~~s~~~C~~~l~~le~  446 (736)
                            ...-..|........++|++.|+..+-. ...++.+.+.+|...|...+.. |..+    -...|..++..+.+
T Consensus       281 l~~~~~~~~~~~fg~~~~~l~~~~L~~YD~~AsrY~~~V~~~Kr~eL~~~i~~~l~~lf~~q----L~~L~~~~l~~Fk~  356 (742)
T PF05879_consen  281 LEEAVQGGVVEDFGKKLKSLRDKALEEYDEEASRYHKSVYQEKRQELESKIDSELQPLFQKQ----LKHLRKKLLESFKE  356 (742)
T ss_pred             hhhhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence                  2344689999999999999999987522 2467777788888877776665 3322    23456777777777


Q ss_pred             HHHhhccCCCcchhHH-HHHHHHHHHHHhccc
Q 004698          447 KLRAACHSSDASIDNV-VKVLDGLISEYETSC  477 (736)
Q Consensus       447 ~l~~~~~~~~~~~~~~-~~~~~~ll~~Y~~~~  477 (736)
                      .|...... +.+|... ......++..|+..|
T Consensus       357 ~l~~~lk~-~~~Fa~~v~~~~~~~~~~F~~~a  387 (742)
T PF05879_consen  357 ALSSALKS-GEDFAEAVRECKQSALEEFEESA  387 (742)
T ss_pred             HHHHHhhc-CCCHHHHHHHHHHHHHHHHHHHH
Confidence            77643322 2344433 344556666676643

It has been speculated that the RHD3 protein is a member of a novel class of GTP-binding proteins that is widespread in eukaryotes and required for regulated cell enlargement []. The family also contains the homologous Saccharomyces cerevisiae synthetic construct enhancement of YOP1 (SEY1) protein which is involved in membrane trafficking [].; GO: 0016817 hydrolase activity, acting on acid anhydrides

>KOG2203 consensus GTP-binding protein [General function prediction only]

Probab=99.95  E-value=1.2e-24  Score=235.82  Aligned_cols=306  Identities=22%  Similarity=0.351  Sum_probs=218.1

Q ss_pred             CCCCeeEEEeCCCCceeeCHHHHHHhhc-c-----CCCEEEEEeeCCCCCChhHHHHHHhCCCCcccccC---CCCCccc
Q 004698           39 PARPIRLVYCDEKGKFRMDPEAVAALQL-V-----KEPIGVVSVCGRARQGKSFILNQLLGRSSGFQVAS---THRPCTK  109 (736)
Q Consensus        39 ~~~pi~Lv~~d~~~~l~l~~eAl~~L~~-i-----~~~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~---~~~~~T~  109 (736)
                      .....|||  |+++.|.  ..+++.+.+ +     .-.+.||||+|++.||||||||.|||++  |....   +.+.+||
T Consensus         3 dr~stQlI--De~keFn--~s~l~~F~q~vgl~d~Gl~YhVVavmG~QSSGKSTLLN~LFgTn--F~~MDA~~gRqQTTK   76 (772)
T KOG2203|consen    3 DRCSTQLI--DEEKEFN--VSGLDYFQQCVGLRDCGLSYHVVAVMGSQSSGKSTLLNHLFGTN--FREMDAFKGRQQTTK   76 (772)
T ss_pred             Ccccceee--ccccccc--hhhHHHHHHHhcccccCcceeEEEEecCcccchHHHHHHHhccC--hHHHHhhhccccccc
Confidence            34568899  6666665  667777754 2     3589999999999999999999999998  77654   5778999


Q ss_pred             eEEeeccccccccCCCCceEEEEeecCCCcccCCCC----ccchHHHHHhhhccceEEEccC----CCCchHHhhhhHHH
Q 004698          110 GLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYDQTG----TYSTQIFSLAVLLSSMFIYNQM----GGIDESAIDRLSLV  181 (736)
Q Consensus       110 Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~~~~~----~~d~~IFaLa~LLSS~~IyN~~----g~i~e~~l~~L~~v  181 (736)
                      |||+...       .|-+..+++||.||.|+.+++.    +..+.+||+|+  |.++|.|++    |..+..++-.|..|
T Consensus        77 GIWlar~-------~~i~p~i~vmDvEGTDGrERGEDqdFErksALFaiav--SevvivNMW~~qIG~~Q~aN~~LLKTV  147 (772)
T KOG2203|consen   77 GIWLARC-------AGIEPCILVMDVEGTDGRERGEDQDFERKSALFAIAV--SEVVIVNMWEHQIGLYQGANMALLKTV  147 (772)
T ss_pred             hhhHHhh-------cCCCCceEEEecccCCcccccccccHHHHhHHHHHhh--hheehhhHHHHHhhHhhccCcHHHHHH
Confidence            9999853       2444569999999999877643    45689999998  999999985    66777788889888


Q ss_pred             HHHHHHHHHHhcCCCCCCCcccccCCeEEEEeecccccccccCccCChHHHHHHhhcc--------ccCCChhhhhhhHH
Q 004698          182 TQMTKHIRIRASGGKTTPSELGQFSPIFVWLLRDFYLDLVEDNRKITPRDYLEIALRP--------VQGSGRDIAAKNEI  253 (736)
Q Consensus       182 ~el~~~i~~k~~~~~~~~~e~~~~~P~f~wlvRDf~l~~~~~g~~~t~~~yLe~~L~~--------~~g~~~~~~~~n~i  253 (736)
                      .++.  +++.+  .+.       -.-.++|||||++.        .||-+-|+..|+.        .+.+. ..  .|  
T Consensus       148 feV~--lrLF~--~rk-------~k~~LlFVIRD~~~--------~TplenLe~~l~~dlqkIW~sl~KPe-~~--e~--  203 (772)
T KOG2203|consen  148 FEVN--LRLFS--PRK-------NKTLLLFVIRDKTG--------VTPLENLEDVLREDLQKIWDSLSKPE-GH--EN--  203 (772)
T ss_pred             HHHH--HHHhC--CCC-------CceEEEEEEecccC--------CCchHHhhHHHHHHHHHHHHhcCCcc-cc--cC--
Confidence            7774  33322  111       02368999999984        4566666655543        22110 01  11  


Q ss_pred             HHHHHhhCCCCceEeccCCCcChhhhhcccCCCcCCCChHHHHHHHHHHHHHhcc-CCccccCC---cccchhhHHHHHH
Q 004698          254 RDSIRALFPDRECFTLVRPLSNENELQRLDQISLDRLRPEFRAGLDALTKFVFER-TRPKQVGA---TVLTGPVLIGITE  329 (736)
Q Consensus       254 r~~i~~~F~~~~cf~l~~P~~~~~~l~~l~~~~~~~l~~eF~~~l~~l~~~i~~~-~~pK~~~g---~~ltg~~l~~l~~  329 (736)
                       ..|..|| ++..+.|+|-...               .+.|.++|..|+++++.+ ..|-.+.|   ..++..+|.-|.+
T Consensus       204 -s~l~DfF-dv~~v~Ls~~~~k---------------edqF~e~V~~LrqrFv~s~~s~~~f~~d~~~~iPadGfs~~a~  266 (772)
T KOG2203|consen  204 -SPLNDFF-DVEFVGLSHKELK---------------EDQFKEQVASLRQRFVHSGISPYGFAGDYHGVIPADGFSFYAE  266 (772)
T ss_pred             -Cchhhhh-ceeeeecchHHHH---------------HHHHHHHHHHHHHHHHhcCCCCCccccccCCcccccchhhhHH
Confidence             3577888 7888888773321               367999999999988876 67766644   4678888999999


Q ss_pred             HHHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHhh--ccc---CCCCCh-HHHHHHHHHHHHHHHHHhhhcc
Q 004698          330 SYLDAINNGAVPTISSSWQSVEEAECRRAYDSATETYMST--FDR---SKPPEE-VALGEAHEAAVQKALAVYNAGA  400 (736)
Q Consensus       330 ~yv~ain~g~vP~i~s~~~~~~e~~~~~a~~~A~~~Y~~~--m~~---~~p~~e-~~L~~~h~~~~~~Al~~F~~~s  400 (736)
                      .+|+.|..|.-..++..-..||...|.++..++++.|...  ..+   -++-.. ..|-...-...++++..|+..+
T Consensus       267 qiWd~Ie~NKDLDLPtqqvlvAt~rceEIanE~~e~fitne~~~e~~e~l~g~l~s~l~~kL~~i~e~~lseYD~qA  343 (772)
T KOG2203|consen  267 QIWDVIEENKDLDLPTQQVLVATVRCEEIANEKLEEFITNEKWLELIEALQGNLVSGLGKKLSSILEECLSEYDEQA  343 (772)
T ss_pred             HHHHHHHhCcCCCCchhhhHHhhhhHHHHHHHHHHHhhhhhhHHHHHhhhcCCCccchhHHHHHHHHHHHHHHhhHH
Confidence            9999999987666666667899999999999999988642  111   111111 2233444444555667777664

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=99.31  E-value=2.6e-08  Score=116.42  Aligned_cols=258  Identities=16%  Similarity=0.163  Sum_probs=181.5

Q ss_pred             HHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHhcccCCCchhHHHHHHHHHhh-----hhhHHHHHHHHHH---HHHH
Q 004698          440 AIQSMERKLRAACHSSDASIDNVVKVLDGLISEYETSCHGPGKWQKLATFLQQSS-----EGPILDLVKRLID---QIGS  511 (736)
Q Consensus       440 ~l~~le~~l~~~~~~~~~~~~~~~~~~~~ll~~Y~~~~~Gp~K~~~L~~fLq~~~-----~~~il~~~~~l~~---~i~~  511 (736)
                      .+++|-+.|++....++++-+.+....++.+.-  .-+..|.--+.|-.-+++.+     .+.|+...+..+.   .+++
T Consensus      1472 el~~Li~~v~~Flt~~~adp~si~~vA~~vL~l--~lp~tpeqi~~L~~~I~e~v~sL~nVd~IL~~T~~di~ra~~L~s 1549 (1758)
T KOG0994|consen 1472 ELRNLIQQVRDFLTQPDADPDSIEEVAEEVLAL--ELPLTPEQIQQLTGEIQERVASLPNVDAILSRTKGDIARAENLQS 1549 (1758)
T ss_pred             HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc--cCCCCHHHHHHHHHHHHHHHHhcccHHHHHHhhhhhHHHHHHHHH
Confidence            344455555555555666666666666666654  23334444444555555433     3455554443333   3445


Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 004698          512 ERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYL---KRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVD  588 (736)
Q Consensus       512 e~~~L~~k~es~e~e~~~lk~~Le~~e~~~~e~~---k~~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le  588 (736)
                      +-...+.+++.++..++.+++.|+++.+++.+++   +.....|...+..++.+.+++...|....++.+++..|...++
T Consensus      1550 ~A~~a~~~A~~v~~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e 1629 (1758)
T KOG0994|consen 1550 EAERARSRAEDVKGQAEDVVEALEEADVAQGEAQDAIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRME 1629 (1758)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6667778889999999999999999999888887   5667888888999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHH---HHHHHHhhHHHHHHHHHHHHHhhhhHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698          589 SLKNEISDWKRKY---DQVLTKQKAMEDQVCSEIEVLKSRSTAAEAR-------LAAAREQALSAQEEVEEWKRKYGVAV  658 (736)
Q Consensus       589 ~lk~e~~e~~~~y---ee~~~~~~~~~~~~~~~i~~L~~k~~~~E~~-------~~~~~~q~~~~~~E~~e~~~ky~~~~  658 (736)
                      .||.+...+...+   ++++..++..+..+++.++.|++.+..+++.       ..+++++++.++.|++++----+.-.
T Consensus      1630 ~lk~~~~qns~~A~~a~~~a~sa~~~A~~a~q~~~~lq~~~~~~~~l~~~r~~g~~~ar~rAe~L~~eA~~Ll~~a~~kl 1709 (1758)
T KOG0994|consen 1630 ELKHKAAQNSAEAKQAEKTAGSAKEQALSAEQGLEILQKYYELVDRLLEKRMEGSQAARERAEQLRTEAEKLLGQANEKL 1709 (1758)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999998877   6788888888999999999999999888877       44566667777766433322111111


Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhHHHHHHH
Q 004698          659 REAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEE  700 (736)
Q Consensus       659 ~e~kalle~~~~~~e~~~e~~~~~~~~l~~e~~~~~~e~~~~  700 (736)
                      ... -.|+..-..+++.++.++++++.|+.++.+++..|+.+
T Consensus      1710 ~~l-~dLe~~y~~~~~~L~~~~aeL~~Le~r~~~vl~~I~~r 1750 (1758)
T KOG0994|consen 1710 DRL-KDLELEYLRNEQALEDKAAELAGLEKRVESVLDHINER 1750 (1758)
T ss_pred             HHH-HHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHhhh
Confidence            111 11222235556777777777777777777777666543

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=99.01  E-value=7.5e-06  Score=88.69  Aligned_cols=206  Identities=23%  Similarity=0.318  Sum_probs=168.0

Q ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 004698          503 KRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSS  582 (736)
Q Consensus       503 ~~l~~~i~~e~~~L~~k~es~e~e~~~lk~~Le~~e~~~~e~~k~~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~  582 (736)
                      ++.++.+..++..+....+.+..+++.++..++....    ..+..+..+..+++.+++......+|+.++.++.+++.+
T Consensus        60 r~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~----~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~f  135 (312)
T PF00038_consen   60 RRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELA----ERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEF  135 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHH----HHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHH
Confidence            5667777888888888999999999999888887533    346788999999999999999999999999999999999


Q ss_pred             HHHHHHHHH------------------------HHHHHHHHHHHHHHHHhhHHHH-HHHHHHHHHhhhhHHHHHHHHHHH
Q 004698          583 LSKTVDSLK------------------------NEISDWKRKYDQVLTKQKAMED-QVCSEIEVLKSRSTAAEARLAAAR  637 (736)
Q Consensus       583 L~~~le~lk------------------------~e~~e~~~~yee~~~~~~~~~~-~~~~~i~~L~~k~~~~E~~~~~~~  637 (736)
                      +...++.-.                        ..+.+++..|+..+...+.+.+ +|+.++.+++.       ......
T Consensus       136 l~~~heeEi~~L~~~~~~~~~~e~~~~~~~dL~~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~-------~~~~~~  208 (312)
T PF00038_consen  136 LKQNHEEEIEELREQIQSSVTVEVDQFRSSDLSAALREIRAQYEEIAQKNREELEEWYQSKLEELRQ-------QSEKSS  208 (312)
T ss_dssp             HHHHHHHHHHTTSTT----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH
T ss_pred             HHhhhhhhhhhhhhccccccceeecccccccchhhhhhHHHHHHHHHhhhhhhhhhhcccccccccc-------cccccc
Confidence            888766522                        4567888999999999998888 99999998888       666677


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 004698          638 EQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTT  717 (736)
Q Consensus       638 ~q~~~~~~E~~e~~~ky~~~~~e~kalle~~~~~~e~~~e~~~~~~~~l~~e~~~~~~e~~~~~~~~~~k~~~~~~~~~~  717 (736)
                      ..+..++.|+.++++.++.+..+. .-+...+...++.+.+++.+.+.-...+...+...+.++..+...+.+..+....
T Consensus       209 ~~~~~~~~E~~~~r~~~~~l~~el-~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~~  287 (312)
T PF00038_consen  209 EELESAKEELKELRRQIQSLQAEL-ESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQLREYQE  287 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccchhHhHHHHHHhhhhHhhhhh-hccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHH
Confidence            788888999999999999888888 4455567778888888888888888888888888888888888888777766665


Q ss_pred             HHH
Q 004698          718 LRL  720 (736)
Q Consensus       718 ~~~  720 (736)
                      |.+
T Consensus       288 Ll~  290 (312)
T PF00038_consen  288 LLD  290 (312)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>KOG4181 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.86  E-value=2.9e-08  Score=104.46  Aligned_cols=49  Identities=27%  Similarity=0.377  Sum_probs=39.7

Q ss_pred             CCeeEEEeCCCCceeeCHHHHHHhhccCCCEEEEEeeCCCCCChhHHHHHHhCC
Q 004698           41 RPIRLVYCDEKGKFRMDPEAVAALQLVKEPIGVVSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        41 ~pi~Lv~~d~~~~l~l~~eAl~~L~~i~~~v~vVsv~G~~rtGKS~LlN~l~~~   94 (736)
                      ++++||.  +.|  .++..|.++|... ..+.||||+|++++|||+|||.|.+.
T Consensus       163 ~s~~li~--d~g--~~~d~a~~ll~~~-tdf~VIgvlG~QgsGKStllslLaan  211 (491)
T KOG4181|consen  163 RSTPLIV--DNG--IFNDNARKLLHKT-TDFTVIGVLGGQGSGKSTLLSLLAAN  211 (491)
T ss_pred             CCcceee--ccc--chhhHHHHHhhcC-CCeeEEEeecCCCccHHHHHHHHhcc
Confidence            4566773  234  4558899888766 78999999999999999999999986

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=98.41  E-value=0.0046  Score=78.43  Aligned_cols=23  Identities=30%  Similarity=0.556  Sum_probs=19.3

Q ss_pred             EEEeeCCCCCChhHHHHH---HhCCC
Q 004698           73 VVSVCGRARQGKSFILNQ---LLGRS   95 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~---l~~~~   95 (736)
                      +++|+||.|+|||+||..   ++|..
T Consensus        25 ~~~i~G~NGsGKS~ll~ai~~~lg~~   50 (1179)
T TIGR02168        25 ITGIVGPNGCGKSNIVDAIRWVLGEQ   50 (1179)
T ss_pred             cEEEECCCCCChhHHHHHHHHHHcCC
Confidence            789999999999999966   55543

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=98.38  E-value=0.0068  Score=76.98  Aligned_cols=21  Identities=33%  Similarity=0.490  Sum_probs=18.1

Q ss_pred             EEEEeeCCCCCChhHHHHHHh
Q 004698           72 GVVSVCGRARQGKSFILNQLL   92 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~   92 (736)
                      ++.+|+||.|+|||+||..|.
T Consensus        24 ~~~~i~G~NGsGKS~ildAi~   44 (1164)
T TIGR02169        24 GFTVISGPNGSGKSNIGDAIL   44 (1164)
T ss_pred             CeEEEECCCCCCHHHHHHHHH
Confidence            367889999999999999863

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=98.34  E-value=0.0015  Score=70.85  Aligned_cols=217  Identities=18%  Similarity=0.260  Sum_probs=146.9

Q ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 004698          505 LIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLS  584 (736)
Q Consensus       505 l~~~i~~e~~~L~~k~es~e~e~~~lk~~Le~~e~~~~e~~k~~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~  584 (736)
                      +....+.++..++..++.+..+...+..+++.....+.+++.+|+......    ..++.++..+.+.++..+.....|.
T Consensus        48 ~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~----~~le~el~~lrk~ld~~~~~r~~le  123 (312)
T PF00038_consen   48 IKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAER----KDLEEELESLRKDLDEETLARVDLE  123 (312)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHH----HHHHHHHhhhhhhhhhhhhhHhHHH
Confidence            344456678899999999999999999999999999999999999886655    8889999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHH-HHHHHHHHHhhhhHHHHHHHH----HHHHHHHHHHHHHHHHH-HHHHHHH
Q 004698          585 KTVDSLKNEISDWKRKYDQVLTKQKAMED-QVCSEIEVLKSRSTAAEARLA----AAREQALSAQEEVEEWK-RKYGVAV  658 (736)
Q Consensus       585 ~~le~lk~e~~e~~~~yee~~~~~~~~~~-~~~~~i~~L~~k~~~~E~~~~----~~~~q~~~~~~E~~e~~-~ky~~~~  658 (736)
                      .++.+++.++..++..|++.+...+.... ....+++.  ....++...+.    .+...+...+.++..|- .+++.+.
T Consensus       124 ~~i~~L~eEl~fl~~~heeEi~~L~~~~~~~~~~e~~~--~~~~dL~~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~  201 (312)
T PF00038_consen  124 NQIQSLKEELEFLKQNHEEEIEELREQIQSSVTVEVDQ--FRSSDLSAALREIRAQYEEIAQKNREELEEWYQSKLEELR  201 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSTT------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhhhhhhhhhhccccccceeecc--cccccchhhhhhHHHHHHHHHhhhhhhhhhhccccccccc
Confidence            99999999999999999998887766542 11111110  11112222222    23334444555544442 2333332


Q ss_pred             HHHHH---HHHHH----------HHHHHHhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhh
Q 004698          659 REAKA---ALEKA----------AIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKVS  725 (736)
Q Consensus       659 ~e~ka---lle~~----------~~~~e~~~e~~~~~~~~l~~e~~~~~~e~~~~~~~~~~k~~~~~~~~~~~~~~l~~~  725 (736)
                      .....   .+..+          +...+..+...+.+..+|+.++..+......+....+..+...+.++..+..++...
T Consensus       202 ~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~  281 (312)
T PF00038_consen  202 QQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQ  281 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHH
Confidence            22211   11111          133335556666777777777777777777778888888888888888888877665


Q ss_pred             hh
Q 004698          726 FF  727 (736)
Q Consensus       726 ~~  727 (736)
                      .-
T Consensus       282 ~~  283 (312)
T PF00038_consen  282 LR  283 (312)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>COG1159 Era GTPase [General function prediction only]

Probab=98.28  E-value=1.2e-06  Score=92.08  Aligned_cols=58  Identities=29%  Similarity=0.513  Sum_probs=43.9

Q ss_pred             CCEEEEEeeCCCCCChhHHHHHHhCCCCcccccCC----CCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           69 EPIGVVSVCGRARQGKSFILNQLLGRSSGFQVAST----HRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        69 ~~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~----~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      -..++|+|+|.+.+|||||||+|+|..  .++-+.    ++..-+||..-           .+..++|+||||+-
T Consensus         4 ~ksGfVaIiGrPNvGKSTLlN~l~G~K--isIvS~k~QTTR~~I~GI~t~-----------~~~QiIfvDTPGih   65 (298)
T COG1159           4 FKSGFVAIIGRPNVGKSTLLNALVGQK--ISIVSPKPQTTRNRIRGIVTT-----------DNAQIIFVDTPGIH   65 (298)
T ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCc--eEeecCCcchhhhheeEEEEc-----------CCceEEEEeCCCCC
Confidence            357899999999999999999999986  333332    33334677763           13679999999984

>TIGR00606 rad50 rad50

Probab=98.25  E-value=0.0097  Score=76.62  Aligned_cols=21  Identities=24%  Similarity=0.330  Sum_probs=18.8

Q ss_pred             EEEEeeCCCCCChhHHHHHHh
Q 004698           72 GVVSVCGRARQGKSFILNQLL   92 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~   92 (736)
                      .+++|+||.|+|||+|+..|.
T Consensus        29 ~~~~I~G~NGaGKTTil~ai~   49 (1311)
T TIGR00606        29 PLTILVGPNGAGKTTIIECLK   49 (1311)
T ss_pred             ceEEEECCCCCCHHHHHHHHH
Confidence            378999999999999999983

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PHA02562 46 endonuclease subunit; Provisional

Probab=98.25  E-value=0.0018  Score=75.78  Aligned_cols=21  Identities=29%  Similarity=0.401  Sum_probs=19.0

Q ss_pred             EEEEeeCCCCCChhHHHHHHh
Q 004698           72 GVVSVCGRARQGKSFILNQLL   92 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~   92 (736)
                      ++..|+|+.|+|||+||..+.
T Consensus        28 g~~~i~G~NG~GKStll~aI~   48 (562)
T PHA02562         28 KKTLITGKNGAGKSTMLEALT   48 (562)
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            688999999999999999865

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=98.25  E-value=0.015  Score=69.89  Aligned_cols=111  Identities=26%  Similarity=0.335  Sum_probs=64.7

Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHhhhhHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698          600 KYDQVLTKQKAMEDQVCSEIEVLKSRSTA-------AEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQ  672 (736)
Q Consensus       600 ~yee~~~~~~~~~~~~~~~i~~L~~k~~~-------~E~~~~~~~~q~~~~~~E~~e~~~ky~~~~~e~kalle~~~~~~  672 (736)
                      ..|..++.+.....++...+++||.++..       +|..+.++..+|.++++.+..+..+|+.    .+.++++..+  
T Consensus      1609 ~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~~A~~a~~~a~sa~~~A~~a~q~~~~lq~~~~~----~~~l~~~r~~-- 1682 (1758)
T KOG0994|consen 1609 AAEKLATSATQQLGELETRMEELKHKAAQNSAEAKQAEKTAGSAKEQALSAEQGLEILQKYYEL----VDRLLEKRME-- 1682 (1758)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhh--
Confidence            33555555555555566666655554432       3344555666666666666555444443    2344444443  


Q ss_pred             HHhhHHHHHHHHHHHHHHHhhHHHHHHH---HHHHHHHHHHHHHHHhhH
Q 004698          673 ERTSKEMQQREDVLREEFSSTLAEKEEE---MKEKATKIEHAEQCLTTL  718 (736)
Q Consensus       673 e~~~e~~~~~~~~l~~e~~~~~~e~~~~---~~~~~~k~~~~~~~~~~~  718 (736)
                        ....++.|...||++++.++.+++.+   |+++..+|+..++.|-.+
T Consensus      1683 --g~~~ar~rAe~L~~eA~~Ll~~a~~kl~~l~dLe~~y~~~~~~L~~~ 1729 (1758)
T KOG0994|consen 1683 --GSQAARERAEQLRTEAEKLLGQANEKLDRLKDLELEYLRNEQALEDK 1729 (1758)
T ss_pred             --cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence              34466777888888888888888777   566666666555444433

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=98.23  E-value=0.00031  Score=79.91  Aligned_cols=179  Identities=17%  Similarity=0.209  Sum_probs=91.2

Q ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH----HHHHH
Q 004698          518 LKYRSIEDNMKLLKKQLEDSERYKSEYL---KRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSK----TVDSL  590 (736)
Q Consensus       518 ~k~es~e~e~~~lk~~Le~~e~~~~e~~---k~~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~----~le~l  590 (736)
                      ..+..+++++..++.-...++..+....   -+...+|+.+++.+++-..-.++++.++.+|.+++.++..    .+..+
T Consensus       148 ~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~  227 (546)
T KOG0977|consen  148 SRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEE  227 (546)
T ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHH
Confidence            3333444444444444433333333332   2445555555555555555556666666666666666652    22222


Q ss_pred             H--------------------HHHHHHHHHHHHHHHHhhHHHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 004698          591 K--------------------NEISDWKRKYDQVLTKQKAMED-QVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEE  649 (736)
Q Consensus       591 k--------------------~e~~e~~~~yee~~~~~~~~~~-~~~~~i~~L~~k~~~~E~~~~~~~~q~~~~~~E~~e  649 (736)
                      .                    .-+.+++..|+..+...|.+.+ +|+.+|.+++....-.-.....+++.+...+..+.+
T Consensus       228 ~~~~~rd~t~~~r~~F~~eL~~Ai~eiRaqye~~~~~nR~diE~~Y~~kI~~i~~~~~~~~~~~~~~rEEl~~~R~~i~~  307 (546)
T KOG0977|consen  228 RRKARRDTTADNREYFKNELALAIREIRAQYEAISRQNRKDIESWYKRKIQEIRTSAERANVEQNYAREELRRIRSRISG  307 (546)
T ss_pred             HHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHhcccc
Confidence            2                    4455666677777777777666 777777766653322223344555555555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHH-----------HHHHHhhHHHHHHHHHHHHHHHhhHHHH
Q 004698          650 WKRKYGVAVREAKAALEKAA-----------IVQERTSKEMQQREDVLREEFSSTLAEK  697 (736)
Q Consensus       650 ~~~ky~~~~~e~kalle~~~-----------~~~e~~~e~~~~~~~~l~~e~~~~~~e~  697 (736)
                      ++.|...+..+- ++|++.+           ...|..+.++.++...+|+++..+..|.
T Consensus       308 Lr~klselE~~n-~~L~~~I~dL~~ql~e~~r~~e~~L~~kd~~i~~mReec~~l~~El  365 (546)
T KOG0977|consen  308 LRAKLSELESRN-SALEKRIEDLEYQLDEDQRSFEQALNDKDAEIAKMREECQQLSVEL  365 (546)
T ss_pred             hhhhhccccccC-hhHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            555554444433 2222222           2333445555555555555555555444

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=98.20  E-value=6.1e-06  Score=83.15  Aligned_cols=62  Identities=27%  Similarity=0.311  Sum_probs=42.7

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcccCC
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYDQ  143 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~~~  143 (736)
                      |+++|.+++|||+|+|.|+|.. +|..+....++|+.+-.+...+     +|  ..+.|+||||+++...
T Consensus         3 i~lvG~~g~GKSsl~N~ilg~~-~~~~~~~~~~~T~~~~~~~~~~-----~~--~~i~viDTPG~~d~~~   64 (196)
T cd01852           3 LVLVGKTGAGKSATGNTILGRE-VFESKLSASSVTKTCQKESAVW-----DG--RRVNVIDTPGLFDTSV   64 (196)
T ss_pred             EEEECCCCCCHHHHHHHhhCCC-ccccccCCCCcccccceeeEEE-----CC--eEEEEEECcCCCCccC
Confidence            7899999999999999999985 5766644444444432222111     23  4689999999986543

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=98.20  E-value=0.0027  Score=80.59  Aligned_cols=38  Identities=18%  Similarity=0.233  Sum_probs=14.3

Q ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698          616 CSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRK  653 (736)
Q Consensus       616 ~~~i~~L~~k~~~~E~~~~~~~~q~~~~~~E~~e~~~k  653 (736)
                      ..++..++..+..++.++.....+...++.++.++...
T Consensus       802 ~~~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~l~~~  839 (1179)
T TIGR02168       802 REALDELRAELTLLNEEAANLRERLESLERRIAATERR  839 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333333333333333333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=98.19  E-value=0.0086  Score=70.41  Aligned_cols=131  Identities=16%  Similarity=0.158  Sum_probs=69.6

Q ss_pred             CcccchhhHHH--HHHHHHHHHhcCCCCCccchHHHHHHHHHHHH----------HHHHHHHHHhhcccCC-CCCh-HHH
Q 004698          316 ATVLTGPVLIG--ITESYLDAINNGAVPTISSSWQSVEEAECRRA----------YDSATETYMSTFDRSK-PPEE-VAL  381 (736)
Q Consensus       316 g~~ltg~~l~~--l~~~yv~ain~g~vP~i~s~~~~~~e~~~~~a----------~~~A~~~Y~~~m~~~~-p~~e-~~L  381 (736)
                      +-.|||.....  -.+.=|+-|.+..+|.|+.....+.+....--          +++.++.++..+.... .+++ .+.
T Consensus        55 ~l~l~Ges~~~f~~w~~~~~~i~~~~~~~ie~~l~~ae~~~~~~~f~~a~~~~~~~~~~l~~~e~~~~~i~~~l~~l~~~  134 (569)
T PRK04778         55 KLNLTGQSEEKFEEWRQKWDEIVTNSLPDIEEQLFEAEELNDKFRFRKAKHEINEIESLLDLIEEDIEQILEELQELLES  134 (569)
T ss_pred             cCCCCcccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34577776543  34555666777899999987766554433222          2222223322222211 0111 233


Q ss_pred             HHHHHHHHHHHHHHhhhc---------ccCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698          382 GEAHEAAVQKALAVYNAG---------AVGVGLARKKYEGLLQKFFRKAFEDHKKNVYMEADIRCSSAIQSMERKLR  449 (736)
Q Consensus       382 ~~~h~~~~~~Al~~F~~~---------s~g~~~~~~~~~~~L~~~i~~~~e~~~~~n~~~s~~~C~~~l~~le~~l~  449 (736)
                      .+.|+.....+...|+..         +||  .....++++|. .+...|..|...+..---......+..++..+.
T Consensus       135 e~~nr~~v~~l~~~y~~~rk~ll~~~~~~G--~a~~~le~~l~-~~e~~f~~f~~l~~~Gd~~~A~e~l~~l~~~~~  208 (569)
T PRK04778        135 EEKNREEVEQLKDLYRELRKSLLANRFSFG--PALDELEKQLE-NLEEEFSQFVELTESGDYVEAREILDQLEEELA  208 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCcccc--chHHHHHHHHH-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            445566666666666542         455  55666777775 477788888766543223344556655555544

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=98.19  E-value=0.029  Score=71.46  Aligned_cols=20  Identities=25%  Similarity=0.438  Sum_probs=18.2

Q ss_pred             EEEeeCCCCCChhHHHHHHh
Q 004698           73 VVSVCGRARQGKSFILNQLL   92 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~   92 (736)
                      +-+|+||.|||||-++..|.
T Consensus        26 ~t~IvGPNGSGKSNI~DAi~   45 (1163)
T COG1196          26 FTAIVGPNGSGKSNIVDAIR   45 (1163)
T ss_pred             CeEEECCCCCchHHHHHHHH
Confidence            57899999999999999975

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=98.18  E-value=0.011  Score=71.42  Aligned_cols=82  Identities=11%  Similarity=0.201  Sum_probs=37.7

Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhHHH
Q 004698          617 SEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAE  696 (736)
Q Consensus       617 ~~i~~L~~k~~~~E~~~~~~~~q~~~~~~E~~e~~~ky~~~~~e~kalle~~~~~~e~~~e~~~~~~~~l~~e~~~~~~e  696 (736)
                      ++..+++.++...+-......+..+.....+.+.+.-.+..+...+...+...+.+++..+.++.....|+++....+.+
T Consensus       351 re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~  430 (1074)
T KOG0250|consen  351 REVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEK  430 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333333333333333333333333344555555555666666666666666666665555


Q ss_pred             HH
Q 004698          697 KE  698 (736)
Q Consensus       697 ~~  698 (736)
                      +.
T Consensus       431 ~~  432 (1074)
T KOG0250|consen  431 AK  432 (1074)
T ss_pred             HH
Confidence            43

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=98.16  E-value=0.032  Score=71.00  Aligned_cols=8  Identities=25%  Similarity=0.422  Sum_probs=4.1

Q ss_pred             cchHHHHH
Q 004698          147 YSTQIFSL  154 (736)
Q Consensus       147 ~d~~IFaL  154 (736)
                      .|+..|+|
T Consensus        40 ldAi~~~l   47 (1164)
T TIGR02169        40 GDAILFAL   47 (1164)
T ss_pred             HHHHHHHh
Confidence            35555554

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=98.12  E-value=0.045  Score=69.99  Aligned_cols=89  Identities=16%  Similarity=0.276  Sum_probs=73.1

Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 004698          513 RSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKN  592 (736)
Q Consensus       513 ~~~L~~k~es~e~e~~~lk~~Le~~e~~~~e~~k~~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk~  592 (736)
                      +..+..++..+..++..+++.+++......+...+....+...+..++...+....+...++++..++..|..++..+..
T Consensus       800 k~~~e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k  879 (1822)
T KOG4674|consen  800 KDKCESRIKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSELEK  879 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55666778888889999999988888887888888888888888888888888888888888888888888888888887


Q ss_pred             HHHHHHHHH
Q 004698          593 EISDWKRKY  601 (736)
Q Consensus       593 e~~e~~~~y  601 (736)
                      ++...+..+
T Consensus       880 ~l~~~~~~~  888 (1822)
T KOG4674|consen  880 RLKSAKTQL  888 (1822)
T ss_pred             HHHHhHHHH
Confidence            777777766

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=98.11  E-value=7.6e-06  Score=83.76  Aligned_cols=101  Identities=22%  Similarity=0.342  Sum_probs=57.7

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcccCCCCcc-chHHH
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYDQTGTY-STQIF  152 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~~~~~~~-d~~IF  152 (736)
                      |-++|..|+|||++.|.|+|.. .|..+.+..+||...-.....     .+|  ..|.++||||+.+.+.+... -..|.
T Consensus         3 IlllG~tGsGKSs~~N~ilg~~-~f~~~~~~~~~t~~~~~~~~~-----~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~   74 (212)
T PF04548_consen    3 ILLLGKTGSGKSSLGNSILGKE-VFKSGSSAKSVTQECQKYSGE-----VDG--RQVTVIDTPGLFDSDGSDEEIIREIK   74 (212)
T ss_dssp             EEEECSTTSSHHHHHHHHHTSS--SS--TTTSS--SS-EEEEEE-----ETT--EEEEEEE--SSEETTEEHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhccc-ceeeccccCCcccccceeeee-----ecc--eEEEEEeCCCCCCCcccHHHHHHHHH
Confidence            5689999999999999999986 488887777888765554331     123  56889999999765542211 11122


Q ss_pred             HHhhhcc----ceE--EEccCCCCchHHhhhhHHHHHH
Q 004698          153 SLAVLLS----SMF--IYNQMGGIDESAIDRLSLVTQM  184 (736)
Q Consensus       153 aLa~LLS----S~~--IyN~~g~i~e~~l~~L~~v~el  184 (736)
                      - ++.++    .++  |.+.. .+++.+...+..+.++
T Consensus        75 ~-~l~~~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~  110 (212)
T PF04548_consen   75 R-CLSLCSPGPHAFLLVIPLG-RFTEEDREVLELLQEI  110 (212)
T ss_dssp             H-HHHHTTT-ESEEEEEEETT-B-SHHHHHHHHHHHHH
T ss_pred             H-HHHhccCCCeEEEEEEecC-cchHHHHHHHHHHHHH
Confidence            1 11112    223  33333 7888888777766554

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>PRK02224 chromosome segregation protein; Provisional

Probab=98.11  E-value=0.016  Score=71.82  Aligned_cols=54  Identities=17%  Similarity=0.214  Sum_probs=33.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698          549 DDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYD  602 (736)
Q Consensus       549 e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~ye  602 (736)
                      +..+..++..+++++..+......+.....++..|.++++.++.+..+|.+.++
T Consensus       508 ~~~l~~l~~~~~~l~~~~~~~~e~le~~~~~~~~l~~e~~~l~~~~~~~~~~~~  561 (880)
T PRK02224        508 EDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAA  561 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444455555555555556666666666666666777777777766666666554

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=98.08  E-value=6.9e-06  Score=75.31  Aligned_cols=59  Identities=25%  Similarity=0.387  Sum_probs=40.6

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCccc
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAY  141 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~  141 (736)
                      |+|+|++++|||+|+|.|+|.. ...+++. .++|.....-  ++..   ++  ..+.|+||||+.+.
T Consensus         2 V~iiG~~~~GKSTlin~l~~~~-~~~~~~~-~~~T~~~~~~--~~~~---~~--~~~~~vDtpG~~~~   60 (116)
T PF01926_consen    2 VAIIGRPNVGKSTLINALTGKK-LAKVSNI-PGTTRDPVYG--QFEY---NN--KKFILVDTPGINDG   60 (116)
T ss_dssp             EEEEESTTSSHHHHHHHHHTST-SSEESSS-TTSSSSEEEE--EEEE---TT--EEEEEEESSSCSSS
T ss_pred             EEEECCCCCCHHHHHHHHhccc-ccccccc-ccceeeeeee--eeee---ce--eeEEEEeCCCCccc
Confidence            7899999999999999999854 3444443 4667766331  1111   22  35679999998643

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=98.08  E-value=0.014  Score=66.78  Aligned_cols=112  Identities=20%  Similarity=0.257  Sum_probs=67.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhh---HHHHHHHH
Q 004698          548 YDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEIS-------DWKRKYDQVLTKQK---AMEDQVCS  617 (736)
Q Consensus       548 ~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e~~-------e~~~~yee~~~~~~---~~~~~~~~  617 (736)
                      .......++........++..|+.++.++..+.....+.++.++....       +++.+.+....+.+   ..+...+.
T Consensus       204 l~~E~~~L~~q~~e~~~ri~~LEedi~~l~qk~~E~e~~~~~lk~~~~elEq~~~eLk~rLk~~~~~~~~~~~~~~~~~~  283 (546)
T PF07888_consen  204 LKEERESLKEQLAEARQRIRELEEDIKTLTQKEKEQEKELDKLKELKAELEQLEAELKQRLKETVVQLKQEETQAQQLQQ  283 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence            344444555555556666666666666666655444444444432211       22333333333322   22346777


Q ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698          618 EIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVR  659 (736)
Q Consensus       618 ~i~~L~~k~~~~E~~~~~~~~q~~~~~~E~~e~~~ky~~~~~  659 (736)
                      +++.|+..++.+++++.+.+.++..+.+|+.+....=+....
T Consensus       284 e~e~LkeqLr~~qe~lqaSqq~~~~L~~EL~~~~~~RDrt~a  325 (546)
T PF07888_consen  284 ENEALKEQLRSAQEQLQASQQEAELLRKELSDAVNVRDRTMA  325 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            788899999999999999999999999998776655444433

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=98.06  E-value=0.0064  Score=77.32  Aligned_cols=52  Identities=15%  Similarity=0.341  Sum_probs=25.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698          550 DAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKY  601 (736)
Q Consensus       550 ~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~y  601 (736)
                      ..+.+++..+..+..++..+....+.+..++..+...+..+......++..+
T Consensus       730 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~  781 (1163)
T COG1196         730 EELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEI  781 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444555555555444454455555555555555554444444444

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=98.04  E-value=5.9e-05  Score=79.16  Aligned_cols=64  Identities=22%  Similarity=0.307  Sum_probs=45.1

Q ss_pred             CCEEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCccc
Q 004698           69 EPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAY  141 (736)
Q Consensus        69 ~~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~  141 (736)
                      .+-.-|.|+|..++|||+|+|.|+|.. .+.++ ...++|..+-+...+     .+|  ..+.|+||||++..
T Consensus        29 ~~~~~IllvG~tGvGKSSliNaLlg~~-~~~v~-~~~~~T~~~~~~~~~-----~~g--~~i~vIDTPGl~~~   92 (249)
T cd01853          29 DFSLTILVLGKTGVGKSSTINSIFGER-KAATS-AFQSETLRVREVSGT-----VDG--FKLNIIDTPGLLES   92 (249)
T ss_pred             cCCeEEEEECCCCCcHHHHHHHHhCCC-CcccC-CCCCceEEEEEEEEE-----ECC--eEEEEEECCCcCcc
Confidence            445568999999999999999999975 34443 344566665544322     123  56889999999754

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=98.01  E-value=0.0052  Score=73.18  Aligned_cols=178  Identities=10%  Similarity=0.225  Sum_probs=91.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH--------
Q 004698          546 KRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCS--------  617 (736)
Q Consensus       546 k~~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~yee~~~~~~~~~~~~~~--------  617 (736)
                      +.+..++.+++.+.|++++++..|......=-..++.|+++|...+.......+...+.-...+++.+....        
T Consensus       456 r~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~  535 (697)
T PF09726_consen  456 RSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQEERKARKEEEEKAARALAQAQAT  535 (697)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhc
Confidence            455566666666666666666555555544444555555555555544444444432222111111111110        


Q ss_pred             --HHH-HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH--HhhHHHHHHHHH
Q 004698          618 --EIE-VLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVR-------EAKAALEKAAIVQE--RTSKEMQQREDV  685 (736)
Q Consensus       618 --~i~-~L~~k~~~~E~~~~~~~~q~~~~~~E~~e~~~ky~~~~~-------e~kalle~~~~~~e--~~~e~~~~~~~~  685 (736)
                        +-+ .++.|.+++|..+..+++++....+++.+|+...+.+..       +.-+|+.-.+...+  ..+|..=.-|-+
T Consensus       536 r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEtr  615 (697)
T PF09726_consen  536 RQECAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSAETR  615 (697)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence              222 355566666666666666666666666555554432222       12122211111111  222222233344


Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhh
Q 004698          686 LREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELK  723 (736)
Q Consensus       686 l~~e~~~~~~e~~~~~~~~~~k~~~~~~~~~~~~~~l~  723 (736)
                      +.=++=++|-++-.++++.+..+.+.++++..|...+.
T Consensus       616 iKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~  653 (697)
T PF09726_consen  616 IKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIA  653 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455578888888899999999998888766665443

; GO: 0016021 integral to membrane

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=98.01  E-value=0.025  Score=64.78  Aligned_cols=36  Identities=22%  Similarity=0.252  Sum_probs=24.8

Q ss_pred             ccCCeEEEEeecccccccccCccCChHHHHHHhhcccc
Q 004698          204 QFSPIFVWLLRDFYLDLVEDNRKITPRDYLEIALRPVQ  241 (736)
Q Consensus       204 ~~~P~f~wlvRDf~l~~~~~g~~~t~~~yLe~~L~~~~  241 (736)
                      .+.|.|.|-=|||..-++.+  .-|.++|.--.|.+.|
T Consensus        27 tlt~~~~ps~~DWIGiFKVG--w~s~rdY~Tf~Wa~~p   62 (546)
T PF07888_consen   27 TLTPGFHPSSKDWIGIFKVG--WSSTRDYYTFVWAPVP   62 (546)
T ss_pred             ecCCCCCCCCCCeeEEeecC--CCchhheeeEEeeccC
Confidence            35678888889998655543  2367788777776554

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=97.99  E-value=7.2e-05  Score=86.49  Aligned_cols=63  Identities=19%  Similarity=0.324  Sum_probs=44.9

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcccCCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYDQT  144 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~~~~  144 (736)
                      -|.|+|.++.|||+|+|.|+|.. .|.++ ...++|..+-.+...     .+|  ..+.|+||+|+++...+
T Consensus       120 rIvLVGKTGVGKSSLINSILGek-vf~vs-s~~~~TTr~~ei~~~-----idG--~~L~VIDTPGL~dt~~d  182 (763)
T TIGR00993       120 NILVLGKSGVGKSATINSIFGEV-KFSTD-AFGMGTTSVQEIEGL-----VQG--VKIRVIDTPGLKSSASD  182 (763)
T ss_pred             EEEEECCCCCCHHHHHHHHhccc-ccccc-CCCCCceEEEEEEEE-----ECC--ceEEEEECCCCCccccc
Confidence            59999999999999999999985 46553 344667666433211     133  46899999999865443

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=97.99  E-value=0.039  Score=64.74  Aligned_cols=129  Identities=14%  Similarity=0.155  Sum_probs=64.0

Q ss_pred             ccchhhHHH--HHHHHHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHH----------HHHhhcccCC-CCCh-HHHHH
Q 004698          318 VLTGPVLIG--ITESYLDAINNGAVPTISSSWQSVEEAECRRAYDSATE----------TYMSTFDRSK-PPEE-VALGE  383 (736)
Q Consensus       318 ~ltg~~l~~--l~~~yv~ain~g~vP~i~s~~~~~~e~~~~~a~~~A~~----------~Y~~~m~~~~-p~~e-~~L~~  383 (736)
                      .++|.....  -.+.=|+-|.+..+|.+.+.+..+.+....--+-.|..          .....+.... .+++ .+..+
T Consensus        53 ~l~Gqt~~~fe~w~~~w~~i~~~~~~~ie~~L~~ae~~~~~~rf~ka~~~i~~~~~~l~~~e~~i~~i~~~l~~L~~~e~  132 (560)
T PF06160_consen   53 NLTGQTEEKFEEWRQKWDEIVTKQLPEIEEQLFEAEEYADKYRFKKAKQAIKEIEEQLDEIEEDIKEILDELDELLESEE  132 (560)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            467766433  34566777778899999988766555433322222222          2222222110 0000 12233


Q ss_pred             HHHHHHHHHHHHhhh-------c--ccCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698          384 AHEAAVQKALAVYNA-------G--AVGVGLARKKYEGLLQKFFRKAFEDHKKNVYMEADIRCSSAIQSMERKLR  449 (736)
Q Consensus       384 ~h~~~~~~Al~~F~~-------~--s~g~~~~~~~~~~~L~~~i~~~~e~~~~~n~~~s~~~C~~~l~~le~~l~  449 (736)
                      .|+.........|+.       .  +||  .....++++|. .+...|..|...+..---.....++..++..+.
T Consensus       133 ~nr~~i~~l~~~y~~lrk~ll~~~~~~G--~a~~~Le~~L~-~ie~~F~~f~~lt~~GD~~~A~eil~~l~~~~~  204 (560)
T PF06160_consen  133 KNREEIEELKEKYRELRKELLAHSFSYG--PAIEELEKQLE-NIEEEFSEFEELTENGDYLEAREILEKLKEETD  204 (560)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhc--hhHHHHHHHHH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            444444444444443       2  355  45566666665 466777777655432222234455555555444

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>PRK02224 chromosome segregation protein; Provisional

Probab=97.98  E-value=0.017  Score=71.45  Aligned_cols=21  Identities=33%  Similarity=0.501  Sum_probs=18.4

Q ss_pred             EEEEeeCCCCCChhHHHHHHh
Q 004698           72 GVVSVCGRARQGKSFILNQLL   92 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~   92 (736)
                      +|..|+|+.|+|||+||..|.
T Consensus        24 g~~~i~G~Ng~GKStil~ai~   44 (880)
T PRK02224         24 GVTVIHGVNGSGKSSLLEACF   44 (880)
T ss_pred             CeEEEECCCCCCHHHHHHHHH
Confidence            467789999999999999965

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=97.98  E-value=0.0015  Score=62.63  Aligned_cols=100  Identities=11%  Similarity=0.188  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 004698          563 TSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALS  642 (736)
Q Consensus       563 e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~yee~~~~~~~~~~~~~~~i~~L~~k~~~~E~~~~~~~~q~~~  642 (736)
                      ..++..++.+++.++.++..+...++...+...... .+..-+...-.+.++..+.+.+...|++.++.+...+.|+...
T Consensus        41 ~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E-~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~  119 (143)
T PF12718_consen   41 QKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAE-QLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKA  119 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHH-HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            333344444444444444444444444433322222 2333333333345566667777777888888888888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 004698          643 AQEEVEEWKRKYGVAVREAKA  663 (736)
Q Consensus       643 ~~~E~~e~~~ky~~~~~e~ka  663 (736)
                      +..+..+|..||+.+..+-+.
T Consensus       120 le~~~~~~E~k~eel~~k~~~  140 (143)
T PF12718_consen  120 LEQERDQWEEKYEELEEKYKE  140 (143)
T ss_pred             HHhhHHHHHHHHHHHHHHHHH
Confidence            888888888888888777654

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=97.98  E-value=0.0048  Score=64.37  Aligned_cols=95  Identities=20%  Similarity=0.256  Sum_probs=59.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH---HHHHHHHHHHHhhh
Q 004698          549 DDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAM---EDQVCSEIEVLKSR  625 (736)
Q Consensus       549 e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~yee~~~~~~~~---~~~~~~~i~~L~~k  625 (736)
                      ..-+....+..+..+.....|+......++++..|..+|...+....+..++|++........   .+.+..+.+.+.++
T Consensus        63 ~~kL~~~e~~~de~er~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~k  142 (237)
T PF00261_consen   63 TEKLEEAEKRADESERARKVLENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESK  142 (237)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchh
Confidence            344444466667777777778888888888888888888888888888888886655444332   22344444455555


Q ss_pred             hHHHHHHHHHHHHHHHHH
Q 004698          626 STAAEARLAAAREQALSA  643 (736)
Q Consensus       626 ~~~~E~~~~~~~~q~~~~  643 (736)
                      +..+|+.+..+...+.++
T Consensus       143 i~eLE~el~~~~~~lk~l  160 (237)
T PF00261_consen  143 IKELEEELKSVGNNLKSL  160 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            555555554444444443

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=97.93  E-value=0.039  Score=57.56  Aligned_cols=40  Identities=25%  Similarity=0.323  Sum_probs=19.7

Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698          510 GSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYD  549 (736)
Q Consensus       510 ~~e~~~L~~k~es~e~e~~~lk~~Le~~e~~~~e~~k~~e  549 (736)
                      +.+...|..++..+++.++.....|..+...+.+.++.++
T Consensus        35 E~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~d   74 (237)
T PF00261_consen   35 EAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRAD   74 (237)
T ss_dssp             HHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            4455555555555555555555444444444444444333

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=97.90  E-value=0.18  Score=65.77  Aligned_cols=182  Identities=15%  Similarity=0.240  Sum_probs=86.3

Q ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 004698          515 SLMLKYRSIEDNMKLLKKQLEDSERYKSEYL---KRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLK  591 (736)
Q Consensus       515 ~L~~k~es~e~e~~~lk~~Le~~e~~~~e~~---k~~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk  591 (736)
                      .+...+..++..++.+...++...+...+.+   ++++.++..++..+..+..++..|+.++...+.++..+...++...
T Consensus      1010 ~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~ 1089 (1930)
T KOG0161|consen 1010 SLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQ 1089 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            3334444444444444444444444333333   4566666555555555666666666666666666666666666555


Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHH---HHhhhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 004698          592 NEISDWKRKYDQVLTKQKAMEDQVCSEIE---VLKSRSTAAEARLAAAREQALSA---QEEVEEWKRKYGVAVREAKAAL  665 (736)
Q Consensus       592 ~e~~e~~~~yee~~~~~~~~~~~~~~~i~---~L~~k~~~~E~~~~~~~~q~~~~---~~E~~e~~~ky~~~~~e~kall  665 (736)
                      ..++...+...+.....+...++++.+-+   .+..+.+++...+.+...+++..   ..--.+.+.|-+.=+.+.+..|
T Consensus      1090 ~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee~~~~t~~q~e~~~k~e~e~~~l~~~l 1169 (1930)
T KOG0161|consen 1090 AEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEELEEQGGTTAAQLELNKKREAEVQKLRRDL 1169 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555555554433333222222222222   11122222222222222222211   1111244555566666666777


Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHhhHHH
Q 004698          666 EKAAIVQERTSKEMQQREDVLREEFSSTLAE  696 (736)
Q Consensus       666 e~~~~~~e~~~e~~~~~~~~l~~e~~~~~~e  696 (736)
                      +.+....|..+..++.+...-.+++.+.+++
T Consensus      1170 eee~~~~e~~~~~lr~~~~~~~~el~~qle~ 1200 (1930)
T KOG0161|consen 1170 EEETLDHEAQIEELRKKHADSLAELQEQLEQ 1200 (1930)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777666655555555555544544444433

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=97.89  E-value=0.19  Score=64.26  Aligned_cols=76  Identities=29%  Similarity=0.296  Sum_probs=45.4

Q ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhh
Q 004698          618 EIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSST  693 (736)
Q Consensus       618 ~i~~L~~k~~~~E~~~~~~~~q~~~~~~E~~e~~~ky~~~~~e~kalle~~~~~~e~~~e~~~~~~~~l~~e~~~~  693 (736)
                      +++.++..+..++..+..+...+..++.+...|+.+++.+..+.+...+.+....+..++....+...+.++.+..
T Consensus       636 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~e~~~~~~~~~~~  711 (1201)
T PF12128_consen  636 KIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEAKEERKEQIEEQLNELEEELKQLKQELEELLEELKEQ  711 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444455556666667777777777777777777777777777777655555544444444444444333

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=97.89  E-value=0.22  Score=64.91  Aligned_cols=160  Identities=15%  Similarity=0.214  Sum_probs=92.6

Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 004698          510 GSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYL----------KRYDDAINDKKKLADDYTSRINNLQGENISLREK  579 (736)
Q Consensus       510 ~~e~~~L~~k~es~e~e~~~lk~~Le~~e~~~~e~~----------k~~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r  579 (736)
                      +.....++.+...+..+...+..++........+++          ...+..+.++...++..+.+...++.+...++++
T Consensus       858 e~~~~ele~~~~~~~~e~~~l~~~l~~e~~~~~~aee~~~~~~~~k~~le~~l~~~~~~~e~~ee~~~~le~~~~~~~~e  937 (1930)
T KOG0161|consen  858 ESKRKELEEKLVKLLEEKNDLQEQLQAEKENLAEAEELLERLRAEKQELEKELKELKERLEEEEEKNAELERKKRKLEQE  937 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444444433333222222          3667777777888888888888888888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH---HHHHH
Q 004698          580 SSSLSKTVDSLKNEISDWKRKYDQVLTKQK---AMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVE---EWKRK  653 (736)
Q Consensus       580 ~~~L~~~le~lk~e~~e~~~~yee~~~~~~---~~~~~~~~~i~~L~~k~~~~E~~~~~~~~q~~~~~~E~~---e~~~k  653 (736)
                      +..|+++++.+...+..|..++...-++.+   .+...+...+..|-..-..+|+++......+...+.++.   ..+.|
T Consensus       938 ~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~k 1017 (1930)
T KOG0161|consen  938 VQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAK 1017 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888888888888888887744433333   333344444444444444456665555555555444433   33445


Q ss_pred             HHHHHHHHHHHHHHHH
Q 004698          654 YGVAVREAKAALEKAA  669 (736)
Q Consensus       654 y~~~~~e~kalle~~~  669 (736)
                      ++..+.+....|++..
T Consensus      1018 le~~l~~le~~le~e~ 1033 (1930)
T KOG0161|consen 1018 LEQQLDDLEVTLEREK 1033 (1930)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            5555555555555444

>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules

Probab=97.88  E-value=0.034  Score=56.46  Aligned_cols=153  Identities=17%  Similarity=0.186  Sum_probs=76.7

Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 004698          510 GSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDS  589 (736)
Q Consensus       510 ~~e~~~L~~k~es~e~e~~~lk~~Le~~e~~~~e~~k~~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~  589 (736)
                      +.+...++.+++.+..+...+....++.++.+.......+..-...+..+..+..+...+..++++++...+.|.+.++-
T Consensus        22 E~e~~~l~~k~~e~~~~~~~m~~i~~e~Ek~i~~~i~e~~~~~~~~~~~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek  101 (207)
T PF05010_consen   22 EEEEQELKKKYEELHKENQEMRKIMEEYEKTIAQMIEEKQKQKELSEAEIQKLLKERDQAYADLNSLEKSFSDLHKRYEK  101 (207)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            45566666666666555555555554444443333222222222223334444444444555555555555555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698          590 LKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAA  669 (736)
Q Consensus       590 lk~e~~e~~~~yee~~~~~~~~~~~~~~~i~~L~~k~~~~E~~~~~~~~q~~~~~~E~~e~~~ky~~~~~e~kalle~~~  669 (736)
                      .|.-+..++...+           .+++.+.+...++                     ..|..+|+.+..-+..-|+.|+
T Consensus       102 ~K~vi~~~k~NEE-----------~Lkk~~~ey~~~l---------------------~~~eqry~aLK~hAeekL~~AN  149 (207)
T PF05010_consen  102 QKEVIEGYKKNEE-----------TLKKCIEEYEERL---------------------KKEEQRYQALKAHAEEKLEKAN  149 (207)
T ss_pred             HHHHHHHHHHhHH-----------HHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555444332           2222222222222                     2233445555555666666777


Q ss_pred             HHHHHhhHHHHHHHHHHHHHHHhhH
Q 004698          670 IVQERTSKEMQQREDVLREEFSSTL  694 (736)
Q Consensus       670 ~~~e~~~e~~~~~~~~l~~e~~~~~  694 (736)
                      +.+++.....+++..+|++.++...
T Consensus       150 eei~~v~~~~~~e~~aLqa~lkk~e  174 (207)
T PF05010_consen  150 EEIAQVRSKHQAELLALQASLKKEE  174 (207)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            7777767777777777776666553

The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].

>PHA02562 46 endonuclease subunit; Provisional

Probab=97.88  E-value=0.0099  Score=69.67  Aligned_cols=43  Identities=9%  Similarity=0.154  Sum_probs=19.5

Q ss_pred             HHHHHHHHHhhhhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 004698          614 QVCSEIEVLKSRSTAAEARLA---AAREQALSAQEEVEEWKRKYGV  656 (736)
Q Consensus       614 ~~~~~i~~L~~k~~~~E~~~~---~~~~q~~~~~~E~~e~~~ky~~  656 (736)
                      .+..++.+|++++..+++...   ...++....+.++.+++..+..
T Consensus       303 ~l~d~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~i~~  348 (562)
T PHA02562        303 KIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKIST  348 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444555555555555544   3333344444444444444433

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]

Probab=97.84  E-value=0.053  Score=62.14  Aligned_cols=87  Identities=28%  Similarity=0.320  Sum_probs=74.8

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 004698          561 DYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQA  640 (736)
Q Consensus       561 ~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~yee~~~~~~~~~~~~~~~i~~L~~k~~~~E~~~~~~~~q~  640 (736)
                      .+..+...+..++..++..+..|...++....+..+++..|++..+-..++..-..++++.-+++...+|.+|...+.|+
T Consensus       186 ~L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql  265 (629)
T KOG0963|consen  186 GLKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQL  265 (629)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444467777888888888888888899999999999999988888878888889999999999999999999999999


Q ss_pred             HHHHHHH
Q 004698          641 LSAQEEV  647 (736)
Q Consensus       641 ~~~~~E~  647 (736)
                      ..+.++.
T Consensus       266 ~~~N~~~  272 (629)
T KOG0963|consen  266 AKANSSK  272 (629)
T ss_pred             Hhhhhhh
Confidence            9988884

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=97.81  E-value=0.18  Score=61.34  Aligned_cols=23  Identities=30%  Similarity=0.404  Sum_probs=18.5

Q ss_pred             CCCEEEEEeeCCCCCChhHHHHHHh
Q 004698           68 KEPIGVVSVCGRARQGKSFILNQLL   92 (736)
Q Consensus        68 ~~~v~vVsv~G~~rtGKS~LlN~l~   92 (736)
                      +.+|.  =|+|+.|||||-+|=.|.
T Consensus        61 g~~vN--fI~G~NGSGKSAIltAl~   83 (1074)
T KOG0250|consen   61 GPRVN--FIVGNNGSGKSAILTALT   83 (1074)
T ss_pred             CCCce--EeecCCCCcHHHHHHHHH
Confidence            34566  468999999999998874

>PRK00089 era GTPase Era; Reviewed

Probab=97.79  E-value=8.4e-05  Score=79.68  Aligned_cols=60  Identities=28%  Similarity=0.481  Sum_probs=41.2

Q ss_pred             CEEEEEeeCCCCCChhHHHHHHhCCCCcccccCC---CCCccceEEeeccccccccCCCCceEEEEeecCCCccc
Q 004698           70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVAST---HRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAY  141 (736)
Q Consensus        70 ~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~---~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~  141 (736)
                      ..++|+|+|++++|||+|+|.|+|..-. .+++.   +.....||+..           .+..++|+||+|+...
T Consensus         4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~-~vs~~~~tt~~~i~~i~~~-----------~~~qi~~iDTPG~~~~   66 (292)
T PRK00089          4 KSGFVAIVGRPNVGKSTLLNALVGQKIS-IVSPKPQTTRHRIRGIVTE-----------DDAQIIFVDTPGIHKP   66 (292)
T ss_pred             eeEEEEEECCCCCCHHHHHHHHhCCcee-ecCCCCCcccccEEEEEEc-----------CCceEEEEECCCCCCc
Confidence            4689999999999999999999997521 12222   22223455442           1257999999998543

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=97.77  E-value=3.1e-05  Score=75.46  Aligned_cols=22  Identities=50%  Similarity=0.794  Sum_probs=20.6

Q ss_pred             EEeeCCCCCChhHHHHHHhCCC
Q 004698           74 VSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      |+|+|.+++|||+|+|.|+|..
T Consensus         1 V~v~G~~ssGKSTliNaLlG~~   22 (168)
T PF00350_consen    1 VAVVGQFSSGKSTLINALLGRP   22 (168)
T ss_dssp             EEEEEBTTSSHHHHHHHHHTSS
T ss_pred             CEEEcCCCCCHHHHHHHHHhcc
Confidence            7899999999999999999974

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>PRK11637 AmiB activator; Provisional

Probab=97.76  E-value=0.033  Score=63.22  Aligned_cols=82  Identities=11%  Similarity=0.124  Sum_probs=35.7

Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 004698          510 GSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDS  589 (736)
Q Consensus       510 ~~e~~~L~~k~es~e~e~~~lk~~Le~~e~~~~e~~k~~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~  589 (736)
                      ...+..++.++...+.++..++.++.+.+..+..    ++..|..+...++.++.++..++.++..++.++..++++++.
T Consensus        46 ~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~----l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~  121 (428)
T PRK11637         46 RDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKK----QEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAA  121 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444444443333222    333333344444444444444444444444444444444444


Q ss_pred             HHHHHH
Q 004698          590 LKNEIS  595 (736)
Q Consensus       590 lk~e~~  595 (736)
                      .+....
T Consensus       122 ~~~~l~  127 (428)
T PRK11637        122 QERLLA  127 (428)
T ss_pred             HHHHHH
Confidence            443333

>PRK04863 mukB cell division protein MukB; Provisional

Probab=97.76  E-value=0.088  Score=67.86  Aligned_cols=24  Identities=21%  Similarity=0.252  Sum_probs=21.3

Q ss_pred             EEEEeeCCCCCChhHHHHHHhCCC
Q 004698           72 GVVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      .+++|+|+.|+|||++|+.|.+..
T Consensus        28 ~~~~l~G~NGaGKSTll~ai~~~l   51 (1486)
T PRK04863         28 LVTTLSGGNGAGKSTTMAAFVTAL   51 (1486)
T ss_pred             CeEEEECCCCCCHHHHHHHHHccc
Confidence            578999999999999999988654

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=97.75  E-value=0.015  Score=59.14  Aligned_cols=158  Identities=15%  Similarity=0.256  Sum_probs=101.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhh
Q 004698          546 KRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSR  625 (736)
Q Consensus       546 k~~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~yee~~~~~~~~~~~~~~~i~~L~~k  625 (736)
                      +++.+.|.++++.....+....++..+...+.+-+..+..+++.++.+..++.+.- ..+...       +..+..++.+
T Consensus        30 ksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK-~~L~~~-------k~rl~~~ek~  101 (201)
T PF13851_consen   30 KSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDK-QSLQNL-------KARLKELEKE  101 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH-------HHHHHHHHHH
Confidence            45555555555555555555555555566666666666666666666655544322 223333       3344444444


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhHHHHHHH---HH
Q 004698          626 STAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEE---MK  702 (736)
Q Consensus       626 ~~~~E~~~~~~~~q~~~~~~E~~e~~~ky~~~~~e~kalle~~~~~~e~~~e~~~~~~~~l~~e~~~~~~e~~~~---~~  702 (736)
                      +..++-.......+...+..|-.+|.++|+.++.+..---+-.+-..|+.+..+...+..-.+++.+++...+-.   +.
T Consensus       102 l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~keaqL~evl~~~nldp~~~~  181 (201)
T PF13851_consen  102 LKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKEAQLNEVLAAANLDPAALS  181 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Confidence            444444566666667777888889999999999888776667778888888888888888888888888776654   44


Q ss_pred             HHHHHHHHH
Q 004698          703 EKATKIEHA  711 (736)
Q Consensus       703 ~~~~k~~~~  711 (736)
                      .+..+++..
T Consensus       182 ~v~~~l~~~  190 (201)
T PF13851_consen  182 QVSKKLEDV  190 (201)
T ss_pred             HHHHHHHHH
Confidence            455555554

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=97.74  E-value=0.11  Score=59.18  Aligned_cols=51  Identities=25%  Similarity=0.286  Sum_probs=26.6

Q ss_pred             HhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhh
Q 004698          674 RTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKV  724 (736)
Q Consensus       674 ~~~e~~~~~~~~l~~e~~~~~~e~~~~~~~~~~k~~~~~~~~~~~~~~l~~  724 (736)
                      +++...+.++.-+.+.+.-.+++.+.+-+.-...+|..++++..+.+.+..
T Consensus       460 ~~l~~~~~el~~~~~~~~~~k~e~eee~~k~~~E~e~le~~l~~l~l~~~~  510 (581)
T KOG0995|consen  460 QILGEIELELKKAESKYELKKEEAEEEWKKCRKEIEKLEEELLNLKLVLNT  510 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444444455555555555555555566666666555554443

>PRK03918 chromosome segregation protein; Provisional

Probab=97.72  E-value=0.15  Score=63.29  Aligned_cols=21  Identities=38%  Similarity=0.621  Sum_probs=17.9

Q ss_pred             EEEEeeCCCCCChhHHHHHHh
Q 004698           72 GVVSVCGRARQGKSFILNQLL   92 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~   92 (736)
                      +|.+|+|+.|+|||+|+..|.
T Consensus        24 g~~~i~G~nG~GKStil~ai~   44 (880)
T PRK03918         24 GINLIIGQNGSGKSSILEAIL   44 (880)
T ss_pred             CcEEEEcCCCCCHHHHHHHHH
Confidence            356799999999999999863

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=97.69  E-value=0.0092  Score=61.66  Aligned_cols=91  Identities=18%  Similarity=0.183  Sum_probs=54.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhH
Q 004698          639 QALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTL  718 (736)
Q Consensus       639 q~~~~~~E~~e~~~ky~~~~~e~kalle~~~~~~e~~~e~~~~~~~~l~~e~~~~~~e~~~~~~~~~~k~~~~~~~~~~~  718 (736)
                      +...+..|+.-|++.-..+..+. +.+.......+..++..+.+..+++..+..+.+..+.++..+..+.....++-+.|
T Consensus        90 e~~aL~~E~~~ak~r~~~le~el-~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~~~~~~~~~L  168 (239)
T COG1579          90 ELRALNIEIQIAKERINSLEDEL-AELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQELSSKREEL  168 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444455555555555544444 44444555555666666667777777777777777666666666666655666666


Q ss_pred             HHHhhhhhhhcc
Q 004698          719 RLELKVSFFDIY  730 (736)
Q Consensus       719 ~~~l~~~~~~~~  730 (736)
                      ...|....|-+|
T Consensus       169 ~~~l~~ell~~y  180 (239)
T COG1579         169 KEKLDPELLSEY  180 (239)
T ss_pred             HHhcCHHHHHHH
Confidence            666666666555

>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]

Probab=97.64  E-value=0.021  Score=58.16  Aligned_cols=147  Identities=14%  Similarity=0.124  Sum_probs=87.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 004698          540 YKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEI  619 (736)
Q Consensus       540 ~~~e~~k~~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~yee~~~~~~~~~~~~~~~i  619 (736)
                      .+.+|+..-.+.-.++..++++++.+..+|+       .+-+.|..+++.+|.+...-+..+-+..+....+-.+....-
T Consensus        35 El~EFQegSrE~EaelesqL~q~etrnrdl~-------t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~aik  107 (333)
T KOG1853|consen   35 ELNEFQEGSREIEAELESQLDQLETRNRDLE-------TRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQTHAIK  107 (333)
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444443333333444444444444444444       444455555555554444433333333334433344444444


Q ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhHHHHH
Q 004698          620 EVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKE  698 (736)
Q Consensus       620 ~~L~~k~~~~E~~~~~~~~q~~~~~~E~~e~~~ky~~~~~e~kalle~~~~~~e~~~e~~~~~~~~l~~e~~~~~~e~~  698 (736)
                      +.|+..++.+|.+++++++.-+.+-=.++|+..+.++++++. |-||-..-.-|..+    ....+|++|++++-+|..
T Consensus       108 eql~kyiReLEQaNDdLErakRati~sleDfeqrLnqAIErn-AfLESELdEke~ll----esvqRLkdEardlrqela  181 (333)
T KOG1853|consen  108 EQLRKYIRELEQANDDLERAKRATIYSLEDFEQRLNQAIERN-AFLESELDEKEVLL----ESVQRLKDEARDLRQELA  181 (333)
T ss_pred             HHHHHHHHHHHHhccHHHHhhhhhhhhHHHHHHHHHHHHHHH-HHHHHHhhHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence            566666777777999999999999999999999999999977 66655444443333    345678888888776653

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=97.64  E-value=0.16  Score=60.23  Aligned_cols=78  Identities=18%  Similarity=0.122  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhh---HHHHHHHHHH----------HHHHHHHHHHHH
Q 004698          649 EWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSST---LAEKEEEMKE----------KATKIEHAEQCL  715 (736)
Q Consensus       649 e~~~ky~~~~~e~kalle~~~~~~e~~~e~~~~~~~~l~~e~~~~---~~e~~~~~~~----------~~~k~~~~~~~~  715 (736)
                      ++..|.-.++++. +.||-+.+.+|+..|..+..+-.||+|+.-+   ..|.+.++..          -.-|++....+|
T Consensus       459 nlEekVklLeetv-~dlEalee~~EQL~Esn~ele~DLreEld~~~g~~kel~~r~~aaqet~yDrdqTI~KfRelva~L  537 (1243)
T KOG0971|consen  459 NLEEKVKLLEETV-GDLEALEEMNEQLQESNRELELDLREELDMAKGARKELQKRVEAAQETVYDRDQTIKKFRELVAHL  537 (1243)
T ss_pred             CHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            4445555555544 6666666777777777777777888776544   4444433222          224677777777


Q ss_pred             hhHHHHhhhhhh
Q 004698          716 TTLRLELKVSFF  727 (736)
Q Consensus       716 ~~~~~~l~~~~~  727 (736)
                      +..+.+++.+.|
T Consensus       538 qdqlqe~~dq~~  549 (1243)
T KOG0971|consen  538 QDQLQELTDQQE  549 (1243)
T ss_pred             HHHHHHHHhhhh
Confidence            777777776654

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=97.64  E-value=8e-05  Score=72.43  Aligned_cols=57  Identities=25%  Similarity=0.394  Sum_probs=40.2

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccC---CCCCccceEEeeccccccccCCCCceEEEEeecCCCcccCC
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVAS---THRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYDQ  143 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~---~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~~~  143 (736)
                      |+++|.+.+|||+|.|+|.|..  ..+++   ++..+..|.|-+.         +  ..+.|+|+||+.+...
T Consensus         3 ialvG~PNvGKStLfN~Ltg~~--~~v~n~pG~Tv~~~~g~~~~~---------~--~~~~lvDlPG~ysl~~   62 (156)
T PF02421_consen    3 IALVGNPNVGKSTLFNALTGAK--QKVGNWPGTTVEKKEGIFKLG---------D--QQVELVDLPGIYSLSS   62 (156)
T ss_dssp             EEEEESTTSSHHHHHHHHHTTS--EEEEESTTSSSEEEEEEEEET---------T--EEEEEEE----SSSSS
T ss_pred             EEEECCCCCCHHHHHHHHHCCC--ceecCCCCCCeeeeeEEEEec---------C--ceEEEEECCCcccCCC
Confidence            8999999999999999999987  55543   2334567888873         2  4689999999866543

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=97.64  E-value=0.33  Score=59.42  Aligned_cols=40  Identities=18%  Similarity=0.363  Sum_probs=27.3

Q ss_pred             ceeeCHHHHHHhhccC-----CC--EEEEEeeCCCCCChhHHHHHHh
Q 004698           53 KFRMDPEAVAALQLVK-----EP--IGVVSVCGRARQGKSFILNQLL   92 (736)
Q Consensus        53 ~l~l~~eAl~~L~~i~-----~~--v~vVsv~G~~rtGKS~LlN~l~   92 (736)
                      .|-|..=.+.-+.+.-     +|  =.+=+|+||.|||||=++..||
T Consensus        83 RL~I~~i~~~NFKSYaG~~ilGPFHksFtaIvGPNGSGKSNVIDsmL  129 (1293)
T KOG0996|consen   83 RLMITEIVVENFKSYAGKQILGPFHKSFTAIVGPNGSGKSNVIDSML  129 (1293)
T ss_pred             eeeehhhhhhhhhhhcCceeecCCCCCceeeECCCCCCchHHHHHHH
Confidence            4555554455554421     22  3478999999999999999875

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=97.63  E-value=0.066  Score=64.39  Aligned_cols=109  Identities=18%  Similarity=0.268  Sum_probs=48.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHH---HHHHHHhhHHHHHHHHHHHHHhhhhHHHHHH-------HHHHHHHHHHHHHHHHHHH
Q 004698          582 SLSKTVDSLKNEISDWKRKY---DQVLTKQKAMEDQVCSEIEVLKSRSTAAEAR-------LAAAREQALSAQEEVEEWK  651 (736)
Q Consensus       582 ~L~~~le~lk~e~~e~~~~y---ee~~~~~~~~~~~~~~~i~~L~~k~~~~E~~-------~~~~~~q~~~~~~E~~e~~  651 (736)
                      .+...++.+...-.+++..|   ++.+......++.+++.++.|+.++...+..       +..+.+.....+.|+++++
T Consensus       305 ~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~  384 (775)
T PF10174_consen  305 ALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLR  384 (775)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333334443333   3333333333444444444444443333333       3344444444455566666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 004698          652 RKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFS  691 (736)
Q Consensus       652 ~ky~~~~~e~kalle~~~~~~e~~~e~~~~~~~~l~~e~~  691 (736)
                      .+|+....+...+..+ +...+..+.+...+++.+++.+.
T Consensus       385 d~~d~~e~ki~~Lq~k-ie~Lee~l~ekd~ql~~~k~Rl~  423 (775)
T PF10174_consen  385 DMLDKKERKINVLQKK-IENLEEQLREKDRQLDEEKERLS  423 (775)
T ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHh
Confidence            6666666666433333 44444444444444444444444

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>TIGR00436 era GTP-binding protein Era

Probab=97.62  E-value=0.00012  Score=77.87  Aligned_cols=56  Identities=30%  Similarity=0.538  Sum_probs=40.0

Q ss_pred             EEEEeeCCCCCChhHHHHHHhCCCCccc-ccC---CCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698           72 GVVSVCGRARQGKSFILNQLLGRSSGFQ-VAS---THRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA  140 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~~~~~gF~-~~~---~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~  140 (736)
                      +.|+|+|++++|||+|+|.|+|..  +. +++   +++....|||...         +  ..++|+||+|+..
T Consensus         1 g~V~liG~pnvGKSTLln~L~~~~--~~~vs~~~~TTr~~i~~i~~~~---------~--~qii~vDTPG~~~   60 (270)
T TIGR00436         1 GFVAILGRPNVGKSTLLNQLHGQK--ISITSPKAQTTRNRISGIHTTG---------A--SQIIFIDTPGFHE   60 (270)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCc--EeecCCCCCcccCcEEEEEEcC---------C--cEEEEEECcCCCC
Confidence            368999999999999999999975  32 222   3333445776531         1  3589999999864

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=97.61  E-value=0.1  Score=62.84  Aligned_cols=170  Identities=17%  Similarity=0.228  Sum_probs=100.1

Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 004698          563 TSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKY---DQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQ  639 (736)
Q Consensus       563 e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~y---ee~~~~~~~~~~~~~~~i~~L~~k~~~~E~~~~~~~~q  639 (736)
                      ...+..|.-.+...+.+...|...+|+++.+..+-...+   ...+.....+...+..+|.+|++.+...|..+..+.+.
T Consensus       321 r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~k  400 (775)
T PF10174_consen  321 RQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKK  400 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455555666666666677777777776666555555   44556666666688888888888888888888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 004698          640 ALSAQEEVEEWKRKYGVAVREAK------------AALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATK  707 (736)
Q Consensus       640 ~~~~~~E~~e~~~ky~~~~~e~k------------alle~~~~~~e~~~e~~~~~~~~l~~e~~~~~~e~~~~~~~~~~k  707 (736)
                      ++++..-+.|=.+....+..+.+            +-|+.+....++.++.....=...+-+...-+.....+++++..+
T Consensus       401 ie~Lee~l~ekd~ql~~~k~Rl~~~~d~~~~~~~~~~lEea~~eker~~e~l~e~r~~~e~e~~Eele~~~~e~~~lk~~  480 (775)
T PF10174_consen  401 IENLEEQLREKDRQLDEEKERLSSQADSSNEDEALETLEEALREKERLQERLEEQRERAEKERQEELETYQKELKELKAK  480 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777666544444444444444            555666666665555543332222222333333444456666666


Q ss_pred             HHHHHHHHhhHH---HHhhhhhhhcccc
Q 004698          708 IEHAEQCLTTLR---LELKVSFFDIYSN  732 (736)
Q Consensus       708 ~~~~~~~~~~~~---~~l~~~~~~~~~~  732 (736)
                      ++.++..++...   .++++.....-|+
T Consensus       481 ~~~LQ~eLsEk~~~l~~~kee~s~l~s~  508 (775)
T PF10174_consen  481 LESLQKELSEKELQLEDAKEEASKLASS  508 (775)
T ss_pred             HHHHhhhhHHHHHHHHHhhhHHHHHhhc
Confidence            666665544333   3555555554443

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>PRK04863 mukB cell division protein MukB; Provisional

Probab=97.60  E-value=0.44  Score=61.69  Aligned_cols=30  Identities=23%  Similarity=0.213  Sum_probs=13.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698          632 RLAAAREQALSAQEEVEEWKRKYGVAVREA  661 (736)
Q Consensus       632 ~~~~~~~q~~~~~~E~~e~~~ky~~~~~e~  661 (736)
                      .+..+..++...+.++.+.+++++.+....
T Consensus       443 ~LenF~aklee~e~qL~elE~kL~~lea~l  472 (1486)
T PRK04863        443 WLEEFQAKEQEATEELLSLEQKLSVAQAAH  472 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444444444433

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=97.60  E-value=0.51  Score=60.54  Aligned_cols=115  Identities=19%  Similarity=0.313  Sum_probs=87.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhHHHHHHHHHHH-HHh
Q 004698          548 YDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKY---DQVLTKQKAMEDQVCSEIE-VLK  623 (736)
Q Consensus       548 ~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~y---ee~~~~~~~~~~~~~~~i~-~L~  623 (736)
                      |...-..++..++.++..+..++.....++..+....+.++.++.++...+..|   +..+...+...+.++.+++ .++
T Consensus       598 ~~~~ee~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  677 (1201)
T PF12128_consen  598 YAASEEELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEAKE  677 (1201)
T ss_pred             hhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444455677778888888888888888888888888888888888888888888   4455555556667777777 666


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698          624 SRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAK  662 (736)
Q Consensus       624 ~k~~~~E~~~~~~~~q~~~~~~E~~e~~~ky~~~~~e~k  662 (736)
                      .+...++..+.++..++..+++|...|+........+.+
T Consensus       678 ~~~~~~~~~l~~l~~~l~~~~~e~~~~~~~~~~~~~e~~  716 (1201)
T PF12128_consen  678 ERKEQIEEQLNELEEELKQLKQELEELLEELKEQLKELR  716 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            677788888888888888888888888877655554444

>PRK10698 phage shock protein PspA; Provisional

Probab=97.59  E-value=0.044  Score=56.60  Aligned_cols=122  Identities=11%  Similarity=0.190  Sum_probs=89.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HhhHHHHHHHHHH
Q 004698          548 YDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLT--------KQKAMEDQVCSEI  619 (736)
Q Consensus       548 ~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~yee~~~--------~~~~~~~~~~~~i  619 (736)
                      .+++...++..+.+++..+..++..+-.+......++.+++.....+.+|..+.+..+.        .+=.....+...+
T Consensus        22 aEDP~k~l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K~~~~~~~  101 (222)
T PRK10698         22 AEDPQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEKQKLTDLI  101 (222)
T ss_pred             hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444555556666666677777888888888888888888844444        3333344588888


Q ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698          620 EVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAA  669 (736)
Q Consensus       620 ~~L~~k~~~~E~~~~~~~~q~~~~~~E~~e~~~ky~~~~~e~kalle~~~  669 (736)
                      ..|+..+...+..+..+..++..+++.+.+|+.|.+.+..+.+++--+..
T Consensus       102 ~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~  151 (222)
T PRK10698        102 ATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRD  151 (222)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999998877765443

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=97.57  E-value=0.21  Score=55.52  Aligned_cols=185  Identities=23%  Similarity=0.251  Sum_probs=102.2

Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 004698          507 DQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYL---KRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSL  583 (736)
Q Consensus       507 ~~i~~e~~~L~~k~es~e~e~~~lk~~Le~~e~~~~e~~---k~~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L  583 (736)
                      +.++++++.+..++....++...|.+++...+..+...+   ...+..+..+++.+++....+..|+.+.   .++...|
T Consensus        41 ~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~---r~qr~~L  117 (420)
T COG4942          41 KQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE---REQRRRL  117 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH---HHHHHHH
Confidence            344666666666666666555555555544333332222   2233333333333344433333333333   3344444


Q ss_pred             HHHHHHHHH--------------H--HHHHHHHHHHHHHHhhH-HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 004698          584 SKTVDSLKN--------------E--ISDWKRKYDQVLTKQKA-MEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEE  646 (736)
Q Consensus       584 ~~~le~lk~--------------e--~~e~~~~yee~~~~~~~-~~~~~~~~i~~L~~k~~~~E~~~~~~~~q~~~~~~E  646 (736)
                      ...|.++..              +  ...-...|-..++..+. ..+.+.....+    +..+.....+-+.++..+..|
T Consensus       118 a~~L~A~~r~g~~p~~~ll~~~eda~~~~R~ai~~~~l~~~~~~~i~~l~~~~~~----l~~~~~~iaaeq~~l~~~~~e  193 (420)
T COG4942         118 AEQLAALQRSGRNPPPALLVSPEDAQRSVRLAIYYGALNPARAERIDALKATLKQ----LAAVRAEIAAEQAELTTLLSE  193 (420)
T ss_pred             HHHHHHHHhccCCCCchhhcChhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence            455555442              1  11222223333333322 12233333332    334555666667777777788


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHhhHHHHH
Q 004698          647 VEEWKRKYGVAVREAKAALEKAAIVQE---RTSKEMQQREDVLREEFSSTLAEKE  698 (736)
Q Consensus       647 ~~e~~~ky~~~~~e~kalle~~~~~~e---~~~e~~~~~~~~l~~e~~~~~~e~~  698 (736)
                      -.+=+++-+.++.|.|-++.+....++   +.+++..+...+|+.++.++-.++.
T Consensus       194 q~~q~~kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e~~aA  248 (420)
T COG4942         194 QRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIASAEAAAA  248 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            888888999999988888887775555   8888999999999999888886654

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=97.57  E-value=0.00045  Score=68.41  Aligned_cols=62  Identities=19%  Similarity=0.222  Sum_probs=42.3

Q ss_pred             CCEEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCccc
Q 004698           69 EPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAY  141 (736)
Q Consensus        69 ~~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~  141 (736)
                      ....-|.|+|..++|||+|+|+|++......+++ ..++|.++-.|..+       +   .+.|+||+|++..
T Consensus        16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~-~~~~t~~~~~~~~~-------~---~~~liDtpG~~~~   77 (179)
T TIGR03598        16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTSK-TPGRTQLINFFEVN-------D---GFRLVDLPGYGYA   77 (179)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccC-CCCcceEEEEEEeC-------C---cEEEEeCCCCccc
Confidence            3344689999999999999999998752223333 33467776555321       1   4789999998643

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=97.57  E-value=0.14  Score=60.72  Aligned_cols=127  Identities=17%  Similarity=0.169  Sum_probs=67.2

Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 004698          566 INNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQE  645 (736)
Q Consensus       566 ~~~Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~yee~~~~~~~~~~~~~~~i~~L~~k~~~~E~~~~~~~~q~~~~~~  645 (736)
                      ....+.+....+.|+..+.+.+..+.++-.++.++|.+...+.       +....    -..++++.....-++++..+.
T Consensus       412 ~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQl-------e~~~~----s~~~~~~~~~~L~d~le~~~~  480 (980)
T KOG0980|consen  412 VEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQL-------ESAEQ----SIDDVEEENTNLNDQLEELQR  480 (980)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH----hHHHHHHHHHHHHHHHHHHHH
Confidence            3455555556666666666666666666666666665543332       11111    111555566666667777777


Q ss_pred             HHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 004698          646 EVEEWKRKYGVAVREA------KAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKE  703 (736)
Q Consensus       646 E~~e~~~ky~~~~~e~------kalle~~~~~~e~~~e~~~~~~~~l~~e~~~~~~e~~~~~~~  703 (736)
                      +...|.+||+......      .+++....+..++.++-....-...-+++...+.+++.++..
T Consensus       481 ~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~~~~~~qs~~~~~~~l~~~l~~KD~~~~~  544 (980)
T KOG0980|consen  481 AAGRAETKTESQAKALESLRQELALLLIELEELQRTLSNLAQSHNNQLAQLEDLLKQKDRLAAE  544 (980)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            7777777766543322      233333334444444444444444445555555555544333

>cd04163 Era Era subfamily

Probab=97.56  E-value=0.00014  Score=69.32  Aligned_cols=60  Identities=27%  Similarity=0.500  Sum_probs=39.2

Q ss_pred             EEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698           72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA  140 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~  140 (736)
                      .+|+++|+.++|||+|+|.|+|..  +.+......+|+ .+.+...      ...++.++++||+|+..
T Consensus         4 ~~i~~~G~~g~GKttl~~~l~~~~--~~~~~~~~~~~~-~~~~~~~------~~~~~~~~liDtpG~~~   63 (168)
T cd04163           4 GFVAIVGRPNVGKSTLLNALVGQK--ISIVSPKPQTTR-NRIRGIY------TDDDAQIIFVDTPGIHK   63 (168)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCc--eEeccCCCCcee-ceEEEEE------EcCCeEEEEEECCCCCc
Confidence            469999999999999999999875  333222222232 2222211      12246789999999854

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma

Probab=97.56  E-value=0.056  Score=58.35  Aligned_cols=86  Identities=17%  Similarity=0.267  Sum_probs=58.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698          522 SIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKY  601 (736)
Q Consensus       522 s~e~e~~~lk~~Le~~e~~~~e~~k~~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~y  601 (736)
                      ++...+-...+.|.+.++.+.+.+.+++...++.+...+........++.+..+.++++..|..+++..+.   .|...+
T Consensus       187 ~~~~~ilq~d~~L~~~ek~~~~~~~k~e~~e~e~~~l~e~~~~~~~~le~~~~~~ee~~~~L~ekme~e~~---~~~~e~  263 (297)
T PF02841_consen  187 SMENSILQADQQLTEKEKEIEEEQAKAEAAEKEKEKLEEKQKEQEQMLEQQERSYEEHIKQLKEKMEEERE---QLLQEQ  263 (297)
T ss_dssp             HHHHHHHHH-TTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence            44445555556666666666666667777777777777777777788888888999999998887766555   666667


Q ss_pred             HHHHHHhhH
Q 004698          602 DQVLTKQKA  610 (736)
Q Consensus       602 ee~~~~~~~  610 (736)
                      +..+.....
T Consensus       264 e~~l~~k~~  272 (297)
T PF02841_consen  264 ERLLEQKLQ  272 (297)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            666554433

GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.

>PF10220 DUF2146: Uncharacterized conserved protein (DUF2146); InterPro: IPR019354 Smg8 and Smg9 are two subunits of the Smg-1 complex

Probab=97.55  E-value=0.1  Score=63.49  Aligned_cols=77  Identities=23%  Similarity=0.303  Sum_probs=58.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHhhhcccCChhhhHHHHHHHHHHHHHHHHHHHHH
Q 004698          349 SVEEAECRRAYDSATETYMSTFDRSKPPEEVALGEAHEAAVQKALAVYNAGAVGVGLARKKYEGLLQKFFRKAFEDHKKN  428 (736)
Q Consensus       349 ~~~e~~~~~a~~~A~~~Y~~~m~~~~p~~e~~L~~~h~~~~~~Al~~F~~~s~g~~~~~~~~~~~L~~~i~~~~e~~~~~  428 (736)
                      -+.+..|.+++..|.+.|.+.+-..    .  =...|+.-..+|+.+|...+-|  ...+.|..+|++++.+.+..-++.
T Consensus       392 kFs~~~C~~~l~~A~~~Y~~~lP~~----Y--~~~~H~~~l~~A~~~~~~~arG--p~~~~~~~~L~~~C~~~W~~Grq~  463 (895)
T PF10220_consen  392 KFSEHRCEKALPLAKEAYQENLPAH----Y--SSAEHENKLAQALRVFESHARG--PAVEKYLEKLQEECDAIWQSGRQL  463 (895)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCcc----c--CHHHHHHHHHHHHHHHHHHccC--chHHHHHHHHHHHHHHHHHHHHhh
Confidence            3667899999999999997654321    1  1467999999999999988887  456789999999998877666555


Q ss_pred             HHHHH
Q 004698          429 VYMEA  433 (736)
Q Consensus       429 n~~~s  433 (736)
                      .+..|
T Consensus       464 CE~~S  468 (895)
T PF10220_consen  464 CEAVS  468 (895)
T ss_pred             hhhhc
Confidence            44433

They suppress Smg-1 kinase activity in the isolated Smg-1 complex, and are involved in nonsense-mediated mRNA decay (NMD) in both mammals and nematodes []. NMD is a surveillance mechanism that detects and degrades mRNAs containing premature translation termination codons.

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=97.54  E-value=0.62  Score=60.15  Aligned_cols=207  Identities=20%  Similarity=0.183  Sum_probs=132.4

Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 004698          513 RSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLK----------RYDDAINDKKKLADDYTSRINNLQGENISLREKSSS  582 (736)
Q Consensus       513 ~~~L~~k~es~e~e~~~lk~~Le~~e~~~~e~~k----------~~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~  582 (736)
                      .+..++.++.+..++..+..++..+-+...+.+-          +++-...-+....+-..+...+|..++..-.+.+..
T Consensus       131 le~~~~ele~l~~~n~~l~~ql~ss~~~~~e~e~r~~e~~s~~vs~q~k~~rl~QEksll~s~~~wL~~eL~~~~ekll~  210 (1822)
T KOG4674|consen  131 LERQKAELEALESENKDLNDQLKSSTKTLSELEARLQETQSEDVSSQLKEERLEQEKSLLESENKWLSRELSKVNEKLLS  210 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            3344444555555555555555555444444431          344444444555566666677777777777777777


Q ss_pred             HHHH----HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH-----------H
Q 004698          583 LSKT----VDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEE-----------V  647 (736)
Q Consensus       583 L~~~----le~lk~e~~e~~~~yee~~~~~~~~~~~~~~~i~~L~~k~~~~E~~~~~~~~q~~~~~~E-----------~  647 (736)
                      ++.+    +..++.++.+.+..|.+.-.+    -+++.+++.+|..++...-..+..+++++.+.+.+           .
T Consensus       211 ~~re~s~~~~~L~~~L~~~~~~~~~~q~~----~~~l~q~~~eLs~~ie~~~~~ls~~k~t~~s~~~kf~~El~~q~kL~  286 (1822)
T KOG4674|consen  211 LRREHSIEVEQLEEKLSDLKESLAELQEK----NKSLKQQNEELSKKIESLNLELSKLKDTAESSEEKFEKELSTQKKLN  286 (1822)
T ss_pred             HHhhhhhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence            7777    777777777777777432222    22444444444444444444444444444444333           3


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhh
Q 004698          648 EEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKV  724 (736)
Q Consensus       648 ~e~~~ky~~~~~e~kalle~~~~~~e~~~e~~~~~~~~l~~e~~~~~~e~~~~~~~~~~k~~~~~~~~~~~~~~l~~  724 (736)
                      .-|+++-+....+. +.+.+++..+++.++++..+..+.-+.+.++..-.+...+.+-.++...+..+..-++.+..
T Consensus       287 eL~ks~~ee~~~~~-~el~~~i~~~~klled~~~~~~e~~d~l~e~~~sl~~~~~~~~k~~~~le~~l~~an~~~~~  362 (1822)
T KOG4674|consen  287 ELWKSKLEELSHEV-AELQRAIEELEKLLEDASERNKENTDQLKELEQSLSKLNEKLEKKVSRLEGELEDANDSLSA  362 (1822)
T ss_pred             HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHh
Confidence            45888888877766 77888999999999999999998888888888888777777777777777777666665544

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=97.54  E-value=0.068  Score=63.87  Aligned_cols=196  Identities=16%  Similarity=0.210  Sum_probs=111.9

Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 004698          512 ERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLK  591 (736)
Q Consensus       512 e~~~L~~k~es~e~e~~~lk~~Le~~e~~~~e~~k~~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk  591 (736)
                      ...+||.++..+...-..++..|.+.++..+..+.++....+..++..    .-+..||+++....+....++++|-+.+
T Consensus       440 ~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DK----q~l~~LEkrL~eE~~~R~~lEkQL~eEr  515 (697)
T PF09726_consen  440 SEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDK----QSLQQLEKRLAEERRQRASLEKQLQEER  515 (697)
T ss_pred             hHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345566665555555455566666666555555555555555443333    3335788888888888888888887777


Q ss_pred             HHHHHHHHHH-----------HHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698          592 NEISDWKRKY-----------DQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVRE  660 (736)
Q Consensus       592 ~e~~e~~~~y-----------ee~~~~~~~~~~~~~~~i~~L~~k~~~~E~~~~~~~~q~~~~~~E~~e~~~ky~~~~~e  660 (736)
                      +...+-....           .+-....|....+++.++..|+..+...|+++..++.+++.++.-..|=..--+.+...
T Consensus       516 k~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~a  595 (697)
T PF09726_consen  516 KARKEEEEKAARALAQAQATRQECAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSA  595 (697)
T ss_pred             HHHhHHHHhhhhccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence            4433211111           13333455556677777777777777777777777776654444222222235667776


Q ss_pred             HHHHHHHHHHHHH-HhhHHHHHHHHHH------H---HHHHhhHHHHHHHHHHHHHHHHHHH
Q 004698          661 AKAALEKAAIVQE-RTSKEMQQREDVL------R---EEFSSTLAEKEEEMKEKATKIEHAE  712 (736)
Q Consensus       661 ~kalle~~~~~~e-~~~e~~~~~~~~l------~---~e~~~~~~e~~~~~~~~~~k~~~~~  712 (736)
                      . +.+...+..+| ...-+.+.++|=.      +   +.+.+.+...+.||.++.+||.+..
T Consensus       596 L-~amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~  656 (697)
T PF09726_consen  596 L-SAMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLL  656 (697)
T ss_pred             H-HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6 44555555555 3333444444311      1   2233444556677888888888764

; GO: 0016021 integral to membrane

>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules

Probab=97.53  E-value=0.13  Score=52.22  Aligned_cols=109  Identities=18%  Similarity=0.207  Sum_probs=70.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhh
Q 004698          546 KRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSR  625 (736)
Q Consensus       546 k~~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~yee~~~~~~~~~~~~~~~i~~L~~k  625 (736)
                      ..++..|..+....+++..+.+.++.-.+.+-.|...++..++..+..=.-++...++           |...+....+|
T Consensus        65 ~~~~~~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~e-----------y~~~l~~~eqr  133 (207)
T PF05010_consen   65 ELSEAEIQKLLKERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEE-----------YEERLKKEEQR  133 (207)
T ss_pred             HhHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-----------HHHHHHHHHHH
Confidence            3456667777777788888888888888888888888877777777655555544333           33333333444


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698          626 STAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKA  668 (736)
Q Consensus       626 ~~~~E~~~~~~~~q~~~~~~E~~e~~~ky~~~~~e~kalle~~  668 (736)
                      |..+-.   -+.++++.+..|+.+.+++++.=....+|.|-+.
T Consensus       134 y~aLK~---hAeekL~~ANeei~~v~~~~~~e~~aLqa~lkk~  173 (207)
T PF05010_consen  134 YQALKA---HAEEKLEKANEEIAQVRSKHQAELLALQASLKKE  173 (207)
T ss_pred             HHHHHH---HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            443332   3457777788888777777776666555555544

The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].

>cd01858 NGP_1 NGP-1

Probab=97.53  E-value=0.00012  Score=71.02  Aligned_cols=55  Identities=31%  Similarity=0.400  Sum_probs=37.6

Q ss_pred             EEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCC
Q 004698           72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI  138 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~  138 (736)
                      ..|+++|.++.|||+|+|.|+|.. ...+++... +|++ +.|. |+      +.  .++|+||||+
T Consensus       103 ~~v~~~G~~nvGKStliN~l~~~~-~~~~~~~~g-~T~~-~~~~-~~------~~--~~~liDtPGi  157 (157)
T cd01858         103 ISVGFIGYPNVGKSSIINTLRSKK-VCKVAPIPG-ETKV-WQYI-TL------MK--RIYLIDCPGV  157 (157)
T ss_pred             eEEEEEeCCCCChHHHHHHHhcCC-ceeeCCCCC-eeEe-EEEE-Ec------CC--CEEEEECcCC
Confidence            357899999999999999999874 345555433 4444 3332 11      11  3789999995

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=97.49  E-value=0.4  Score=56.57  Aligned_cols=168  Identities=19%  Similarity=0.240  Sum_probs=77.6

Q ss_pred             HHHHHHHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHH---hccc-CC-CchhHHHHHHHHHhh---h---hhHHHHH
Q 004698          434 DIRCSSAIQSMERKLRAACHSSDASIDNVVKVLDGLISEY---ETSC-HG-PGKWQKLATFLQQSS---E---GPILDLV  502 (736)
Q Consensus       434 ~~~C~~~l~~le~~l~~~~~~~~~~~~~~~~~~~~ll~~Y---~~~~-~G-p~K~~~L~~fLq~~~---~---~~il~~~  502 (736)
                      ...|....+.|.+.|.+..+..+..++.+-+.+..+-..|   ..-. .| |-+......-++..+   .   ..|=.+.
T Consensus       142 v~~l~~~y~~~rk~ll~~~~~~G~a~~~le~~l~~~e~~f~~f~~l~~~Gd~~~A~e~l~~l~~~~~~l~~~~~~iP~l~  221 (569)
T PRK04778        142 VEQLKDLYRELRKSLLANRFSFGPALDELEKQLENLEEEFSQFVELTESGDYVEAREILDQLEEELAALEQIMEEIPELL  221 (569)
T ss_pred             HHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3467788888888888877776666666655555554444   3311 11 111111111111111   0   0010111


Q ss_pred             HHHHHHHHHHHHHHHHHhh------------hHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-------
Q 004698          503 KRLIDQIGSERSSLMLKYR------------SIEDNMKLLKKQLEDSERYKSEYL-KRYDDAINDKKKLADDY-------  562 (736)
Q Consensus       503 ~~l~~~i~~e~~~L~~k~e------------s~e~e~~~lk~~Le~~e~~~~e~~-k~~e~~In~lkk~~e~~-------  562 (736)
                      ..|...+=....+|+.-++            .+..++..++.++..+...+..-+ +..+..+..+...++++       
T Consensus       222 ~~~~~~~P~ql~el~~gy~~m~~~gy~~~~~~i~~~i~~l~~~i~~~~~~l~~l~l~~~~~~~~~i~~~Id~Lyd~lekE  301 (569)
T PRK04778        222 KELQTELPDQLQELKAGYRELVEEGYHLDHLDIEKEIQDLKEQIDENLALLEELDLDEAEEKNEEIQERIDQLYDILERE  301 (569)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1122111112222222222            234455555555555444443332 22222222222222222       


Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698          563 TSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKY  601 (736)
Q Consensus       563 e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~y  601 (736)
                      ..-....+.....++..+..+.++...++.++..++..|
T Consensus       302 ~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY  340 (569)
T PRK04778        302 VKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSY  340 (569)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            222255666666677777777777777777777777776

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=97.45  E-value=0.36  Score=55.14  Aligned_cols=80  Identities=19%  Similarity=0.194  Sum_probs=40.8

Q ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HhhHHHHHHHHHH
Q 004698          621 VLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQE--------------RTSKEMQQREDVL  686 (736)
Q Consensus       621 ~L~~k~~~~E~~~~~~~~q~~~~~~E~~e~~~ky~~~~~e~kalle~~~~~~e--------------~~~e~~~~~~~~l  686 (736)
                      .|+...+..........+.++.++.|+.+...+|+....++..+..+...+.|              ..+.++..++++.
T Consensus       443 tLq~~~~~~~~~i~E~~~~l~~~~~el~~~~~~~~~~k~e~eee~~k~~~E~e~le~~l~~l~l~~~~~m~~a~~~v~s~  522 (581)
T KOG0995|consen  443 TLQEHFSNKASTIEEKIQILGEIELELKKAESKYELKKEEAEEEWKKCRKEIEKLEEELLNLKLVLNTSMKEAEELVKSI  522 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333344445555555566666666666655555444444433322              3444555556666


Q ss_pred             HHHHHhhHHHHHHH
Q 004698          687 REEFSSTLAEKEEE  700 (736)
Q Consensus       687 ~~e~~~~~~e~~~~  700 (736)
                      +-++..+....+.+
T Consensus       523 e~el~~~~~~~~ee  536 (581)
T KOG0995|consen  523 ELELDRMVATGEEE  536 (581)
T ss_pred             HHHHHHHHHHHHHH
Confidence            66666655555544

>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]

Probab=97.44  E-value=0.061  Score=53.25  Aligned_cols=141  Identities=16%  Similarity=0.216  Sum_probs=105.2

Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 004698          510 GSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDK---KKLADDYTSRINNLQGENISLREKSSSLSKT  586 (736)
Q Consensus       510 ~~e~~~L~~k~es~e~e~~~lk~~Le~~e~~~~e~~k~~e~~In~l---kk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~  586 (736)
                      ...+..+.++....+..++.+..+|.++....+++.++|++.+..+   ...++..+-+...-+.+|..+.+....+..+
T Consensus        45 er~~Kv~enr~~kdEE~~e~~e~qLkEAk~iaE~adrK~eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~n  124 (205)
T KOG1003|consen   45 ERGMKVIENRAQKLEEKMEAQEAQLKEAKHIAEKADRKYEEVARKLVIIEGELERAEERAEAAESQSEELEEDLRILDSN  124 (205)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhH
Confidence            4455777788888899999999999999999899899999888877   4444555544455555555555555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698          587 VDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREA  661 (736)
Q Consensus       587 le~lk~e~~e~~~~yee~~~~~~~~~~~~~~~i~~L~~k~~~~E~~~~~~~~q~~~~~~E~~e~~~ky~~~~~e~  661 (736)
                      +.++...-.        .+++   ..+.|..+|..|-+|+..+|.+..-++|....++.+..+|..+-.....+.
T Consensus       125 lk~l~~~ee--------~~~q---~~d~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE~kl~~~k~ky  188 (205)
T KOG1003|consen  125 LKSLSAKEE--------KLEQ---KEEKYEEELKELTDKLKEAETRAEFAERRVAKLEKERDDLEEKLEEAKEKY  188 (205)
T ss_pred             HHHHHHHHH--------HHhh---hHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHHhhHHHHHHH
Confidence            444433221        2222   256889999999999999999999999999999999999999888877763

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=97.40  E-value=0.00099  Score=71.61  Aligned_cols=74  Identities=19%  Similarity=0.238  Sum_probs=45.1

Q ss_pred             HHHHHhhcc---CCCEEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeec
Q 004698           59 EAVAALQLV---KEPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDS  135 (736)
Q Consensus        59 eAl~~L~~i---~~~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDt  135 (736)
                      +.+++|..+   +.+-..|.|+|..+.|||+|+|.|+|... |.+++ ..++|...-+...     ..+|  ..+.++||
T Consensus        23 ~l~~~l~~l~~~~~~~~rIllvGktGVGKSSliNsIlG~~v-~~vs~-f~s~t~~~~~~~~-----~~~G--~~l~VIDT   93 (313)
T TIGR00991        23 KLLELLGKLKEEDVSSLTILVMGKGGVGKSSTVNSIIGERI-ATVSA-FQSEGLRPMMVSR-----TRAG--FTLNIIDT   93 (313)
T ss_pred             HHHHHHHhcccccccceEEEEECCCCCCHHHHHHHHhCCCc-ccccC-CCCcceeEEEEEE-----EECC--eEEEEEEC
Confidence            344455433   44566789999999999999999999752 22221 1223222211111     1133  56899999


Q ss_pred             CCCccc
Q 004698          136 EGIDAY  141 (736)
Q Consensus       136 eG~~~~  141 (736)
                      +|+++.
T Consensus        94 PGL~d~   99 (313)
T TIGR00991        94 PGLIEG   99 (313)
T ss_pred             CCCCch
Confidence            999754

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=97.36  E-value=0.48  Score=54.59  Aligned_cols=184  Identities=15%  Similarity=0.230  Sum_probs=103.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH-HHHHHHHHHHHHHh---
Q 004698          501 LVKRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYD---DAINDKKKLA-DDYTSRINNLQGEN---  573 (736)
Q Consensus       501 ~~~~l~~~i~~e~~~L~~k~es~e~e~~~lk~~Le~~e~~~~e~~k~~e---~~In~lkk~~-e~~e~~~~~Le~k~---  573 (736)
                      +.++....++-+...|+.....+..++..++++++..--...+++.+-+   +.|+-++..- ..+.....-.+.+.   
T Consensus       159 ~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t~~  238 (546)
T KOG0977|consen  159 TLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKARRDTTAD  238 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhccccc
Confidence            3444444555556666666666666666666666554433333331111   1111110000 01111111111111   


Q ss_pred             ------hHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhh--------------HHHHHHHHHHHHHhhhhHHHHHH
Q 004698          574 ------ISLREKSSSLSKTVDSLK-NEISDWKRKYDQVLTKQK--------------AMEDQVCSEIEVLKSRSTAAEAR  632 (736)
Q Consensus       574 ------~sl~~r~~~L~~~le~lk-~e~~e~~~~yee~~~~~~--------------~~~~~~~~~i~~L~~k~~~~E~~  632 (736)
                            +.|..-+..++.++|.-. .-..+|..-|+.-+...+              -+.......|..|+.|++.+|.+
T Consensus       239 ~r~~F~~eL~~Ai~eiRaqye~~~~~nR~diE~~Y~~kI~~i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~klselE~~  318 (546)
T KOG0977|consen  239 NREYFKNELALAIREIRAQYEAISRQNRKDIESWYKRKIQEIRTSAERANVEQNYAREELRRIRSRISGLRAKLSELESR  318 (546)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHhcccchhhhhcccccc
Confidence                  223344445555555433 445566666766666666              33346677788999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhHH
Q 004698          633 LAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLA  695 (736)
Q Consensus       633 ~~~~~~q~~~~~~E~~e~~~ky~~~~~e~kalle~~~~~~e~~~e~~~~~~~~l~~e~~~~~~  695 (736)
                      .....++.+-++.++.+=+|-|+..+..-           +..+..++.+..+|..|+..++.
T Consensus       319 n~~L~~~I~dL~~ql~e~~r~~e~~L~~k-----------d~~i~~mReec~~l~~Elq~LlD  370 (546)
T KOG0977|consen  319 NSALEKRIEDLEYQLDEDQRSFEQALNDK-----------DAEIAKMREECQQLSVELQKLLD  370 (546)
T ss_pred             ChhHHHHHHHHHhhhhhhhhhhhhhhhhH-----------HHHHHHHHHHHHHHHHHHHHhhc
Confidence            99999999999999999999998777644           33344455555566666666553

>PRK03918 chromosome segregation protein; Provisional

Probab=97.35  E-value=0.47  Score=58.81  Aligned_cols=25  Identities=12%  Similarity=0.243  Sum_probs=10.6

Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHH
Q 004698          510 GSERSSLMLKYRSIEDNMKLLKKQL  534 (736)
Q Consensus       510 ~~e~~~L~~k~es~e~e~~~lk~~L  534 (736)
                      ..++..++.++..++.++..++..+
T Consensus       206 ~~ei~~l~~e~~~l~~~~~~~~~~l  230 (880)
T PRK03918        206 LREINEISSELPELREELEKLEKEV  230 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444444444433

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=97.34  E-value=0.042  Score=52.76  Aligned_cols=97  Identities=21%  Similarity=0.318  Sum_probs=58.3

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 004698          557 KLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAA  636 (736)
Q Consensus       557 k~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~yee~~~~~~~~~~~~~~~i~~L~~k~~~~E~~~~~~  636 (736)
                      ..+..++.+...++..+.+++.+...|+.+|+.+...+.+.+...++.-... ...+.+...|..|...+..++.++..+
T Consensus        21 ~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~-~~~E~l~rriq~LEeele~ae~~L~e~   99 (143)
T PF12718_consen   21 AKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRK-SNAEQLNRRIQLLEEELEEAEKKLKET   99 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HhHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            3345556666677777777788888888888888888888877776654433 223455555555555555555555555


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 004698          637 REQALSAQEEVEEWKRKY  654 (736)
Q Consensus       637 ~~q~~~~~~E~~e~~~ky  654 (736)
                      ...++.+...+.+..|+.
T Consensus       100 ~ekl~e~d~~ae~~eRkv  117 (143)
T PF12718_consen  100 TEKLREADVKAEHFERKV  117 (143)
T ss_pred             HHHHHHHHHHhHHHHHHH
Confidence            555555444443333333

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>cd01850 CDC_Septin CDC/Septin

Probab=97.34  E-value=0.00032  Score=74.79  Aligned_cols=63  Identities=22%  Similarity=0.311  Sum_probs=45.5

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCCCcccccCC-------CCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698           73 VVSVCGRARQGKSFILNQLLGRSSGFQVAST-------HRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA  140 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~-------~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~  140 (736)
                      -|.|+|..++|||+|+|.|++..  |.....       ..++|.++-.....+.   .+|..+.+.++||+|+++
T Consensus         6 ~I~vvG~sg~GKSTliN~L~~~~--~~~~~~~~~~~~~~~~~T~~i~~~~~~i~---~~g~~~~l~iiDTpGfgd   75 (276)
T cd01850           6 NIMVVGESGLGKSTFINTLFNTK--LIPSDYPPDPAEEHIDKTVEIKSSKAEIE---ENGVKLKLTVIDTPGFGD   75 (276)
T ss_pred             EEEEEcCCCCCHHHHHHHHHcCC--CccccCCCCccccccCCceEEEEEEEEEE---ECCEEEEEEEEecCCccc
Confidence            48899999999999999999875  322211       2356777766654442   246668899999999974

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=97.33  E-value=0.23  Score=50.23  Aligned_cols=137  Identities=15%  Similarity=0.223  Sum_probs=85.3

Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 004698          507 DQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKT  586 (736)
Q Consensus       507 ~~i~~e~~~L~~k~es~e~e~~~lk~~Le~~e~~~~e~~k~~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~  586 (736)
                      ....+++.+++.+++.+..+...|+...--.++++    .+|+..-+++=..+.....++..|..++....++...++..
T Consensus        15 ~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL----~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~k   90 (194)
T PF15619_consen   15 KELQNELAELQRKLQELRKENKTLKQLQKRQEKAL----QKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERK   90 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455666677777777666666666655544444    45566666666666666666666666666666666666666


Q ss_pred             HHHHHHHHHHHHHHH---HHHHH-HhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 004698          587 VDSLKNEISDWKRKY---DQVLT-KQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEV  647 (736)
Q Consensus       587 le~lk~e~~e~~~~y---ee~~~-~~~~~~~~~~~~i~~L~~k~~~~E~~~~~~~~q~~~~~~E~  647 (736)
                      +-....++.-.+...   +..+. ..=.+.+++..++..++.+..+.+.++..+.++++.+.+.+
T Consensus        91 lk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~  155 (194)
T PF15619_consen   91 LKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEKKIQELEKQLELENKSF  155 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            555544444333333   22222 23334568888888888888888888888888887776664

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=97.33  E-value=0.00011  Score=71.83  Aligned_cols=70  Identities=21%  Similarity=0.303  Sum_probs=39.5

Q ss_pred             HHHHHHhhc-cCCCEEEEEeeCCCCCChhHHHHHHhCCCCccccc-------CCCCCccceEEeeccccccccCCCCceE
Q 004698           58 PEAVAALQL-VKEPIGVVSVCGRARQGKSFILNQLLGRSSGFQVA-------STHRPCTKGLWLWSAPLKRTALDGTEYN  129 (736)
Q Consensus        58 ~eAl~~L~~-i~~~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~-------~~~~~~T~Giw~w~~p~~~~~~~g~~~~  129 (736)
                      .+.++.|.. +..  -++.++|+.+.|||+|+|.|++.. -+.++       .|...+|..-++.-       |+|    
T Consensus        23 ~~g~~~l~~~l~~--k~~vl~G~SGvGKSSLiN~L~~~~-~~~t~~is~~~~rGkHTTt~~~l~~l-------~~g----   88 (161)
T PF03193_consen   23 GEGIEELKELLKG--KTSVLLGQSGVGKSSLINALLPEA-KQKTGEISEKTGRGKHTTTHRELFPL-------PDG----   88 (161)
T ss_dssp             TTTHHHHHHHHTT--SEEEEECSTTSSHHHHHHHHHTSS-----S--------------SEEEEEE-------TTS----
T ss_pred             CcCHHHHHHHhcC--CEEEEECCCCCCHHHHHHHHHhhc-chhhhhhhcccCCCcccCCCeeEEec-------CCC----
Confidence            444555543 344  467889999999999999999873 12222       22222333333321       222    


Q ss_pred             EEEeecCCCccc
Q 004698          130 LLLLDSEGIDAY  141 (736)
Q Consensus       130 v~llDteG~~~~  141 (736)
                      .+++||||+.++
T Consensus        89 ~~iIDTPGf~~~  100 (161)
T PF03193_consen   89 GYIIDTPGFRSF  100 (161)
T ss_dssp             EEEECSHHHHT-
T ss_pred             cEEEECCCCCcc
Confidence            478999998654

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=97.32  E-value=0.036  Score=52.46  Aligned_cols=128  Identities=20%  Similarity=0.297  Sum_probs=90.5

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 004698          557 KLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAA  636 (736)
Q Consensus       557 k~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~yee~~~~~~~~~~~~~~~i~~L~~k~~~~E~~~~~~  636 (736)
                      ..+..+.+++..+......+..++..+..+++.......+...+|+..+...-.+    .+.|..|+..+..+...+..+
T Consensus         3 ~e~~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~----~~~L~~lr~e~~~~~~~~~~l   78 (132)
T PF07926_consen    3 SELSSLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAED----IKELQQLREELQELQQEINEL   78 (132)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence            4566777888888888888889999999999999999999999998877766332    344555555555555566666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Q 004698          637 REQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSS  692 (736)
Q Consensus       637 ~~q~~~~~~E~~e~~~ky~~~~~e~kalle~~~~~~e~~~e~~~~~~~~l~~e~~~  692 (736)
                      +..+++++.++..-+.    .+.+.|..|++.+...+++++++..+..=|.+++.+
T Consensus        79 ~~~~~~a~~~l~~~e~----sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~  130 (132)
T PF07926_consen   79 KAEAESAKAELEESEA----SWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLES  130 (132)
T ss_pred             HHHHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            6666666666533322    245677777788888887777777777777766643

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=97.30  E-value=0.25  Score=50.25  Aligned_cols=106  Identities=17%  Similarity=0.333  Sum_probs=65.0

Q ss_pred             HhhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHH
Q 004698          519 KYRSIEDNMKLLKKQLEDSERYKSEYL---KRYDDAINDKKKLADDYTSRINNLQGENIS---LREKSSSLSKTVDSLKN  592 (736)
Q Consensus       519 k~es~e~e~~~lk~~Le~~e~~~~e~~---k~~e~~In~lkk~~e~~e~~~~~Le~k~~s---l~~r~~~L~~~le~lk~  592 (736)
                      -+.+++++++.+++..+..++.+.+..   +++.+++...+...+.+..+...++++..+   +..++..+.+++..++.
T Consensus        28 lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~  107 (201)
T PF13851_consen   28 LIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKW  107 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            366677777777777777777777765   466666666666666666666666555554   33455555666666666


Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 004698          593 EISDWKRKYDQVLTKQKAMEDQVCSEIEVLKS  624 (736)
Q Consensus       593 e~~e~~~~yee~~~~~~~~~~~~~~~i~~L~~  624 (736)
                      +-..+..+|...-.+.......+..-|.+++.
T Consensus       108 e~evL~qr~~kle~ErdeL~~kf~~~i~evqQ  139 (201)
T PF13851_consen  108 EHEVLEQRFEKLEQERDELYRKFESAIQEVQQ  139 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666666655444443334445555554444

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=97.30  E-value=0.00038  Score=67.46  Aligned_cols=55  Identities=33%  Similarity=0.389  Sum_probs=38.1

Q ss_pred             EEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCC
Q 004698           72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI  138 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~  138 (736)
                      ..|.|+|.+++|||+|+|.|++.. .+.++++  +.|.--|.|.. +      +  ..+.|+||||+
T Consensus       101 ~~~~~~G~~~~GKstlin~l~~~~-~~~~~~~--~~~t~~~~~~~-~------~--~~~~liDtPG~  155 (155)
T cd01849         101 ITVGVIGYPNVGKSSVINALLNKL-KLKVGNV--PGTTTSQQEVK-L------D--NKIKLLDTPGI  155 (155)
T ss_pred             cEEEEEccCCCCHHHHHHHHHccc-cccccCC--CCcccceEEEE-e------c--CCEEEEECCCC
Confidence            458899999999999999999864 3445444  33333356642 1      1  24789999996

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>cd01894 EngA1 EngA1 subfamily

Probab=97.30  E-value=0.00055  Score=65.05  Aligned_cols=58  Identities=26%  Similarity=0.419  Sum_probs=39.6

Q ss_pred             EeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCccc
Q 004698           75 SVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAY  141 (736)
Q Consensus        75 sv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~  141 (736)
                      +++|..++|||+|+|.|++....+  .+...++|...+.....+     +  .+.+.++||+|++..
T Consensus         1 ~l~G~~~~GKssl~~~l~~~~~~~--~~~~~~~t~~~~~~~~~~-----~--~~~~~i~DtpG~~~~   58 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTGRRDAI--VEDTPGVTRDRIYGEAEW-----G--GREFILIDTGGIEPD   58 (157)
T ss_pred             CccCCCCCCHHHHHHHHhCCcEEe--ecCCCCceeCceeEEEEE-----C--CeEEEEEECCCCCCc
Confidence            479999999999999999875212  222335566555544322     2  267899999998653

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=97.28  E-value=0.056  Score=60.69  Aligned_cols=43  Identities=7%  Similarity=0.185  Sum_probs=19.1

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698          559 ADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKY  601 (736)
Q Consensus       559 ~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~y  601 (736)
                      ...+.+++..++.++..+..++..+..+++.++.+....+..|
T Consensus       139 ~~~~~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l~~~~~~~  181 (423)
T TIGR01843       139 KSTLRAQLELILAQIKQLEAELAGLQAQLQALRQQLEVISEEL  181 (423)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444444444444444444444333

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=97.27  E-value=0.64  Score=55.46  Aligned_cols=102  Identities=15%  Similarity=0.232  Sum_probs=49.6

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhHHHHHHHHHHH-------HHhhhhH
Q 004698          558 LADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKY---DQVLTKQKAMEDQVCSEIE-------VLKSRST  627 (736)
Q Consensus       558 ~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~y---ee~~~~~~~~~~~~~~~i~-------~L~~k~~  627 (736)
                      ++++.+.+....+.+++.+-+.+..|....-.+..+-.+..+..   ++.+.+.......+.-.++       .+..|+.
T Consensus       411 ~~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e  490 (980)
T KOG0980|consen  411 LVEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTE  490 (980)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence            34555555555555544444444444444444444444433333   1111111111112222222       3333555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698          628 AAEARLAAAREQALSAQEEVEEWKRKYGVAVR  659 (736)
Q Consensus       628 ~~E~~~~~~~~q~~~~~~E~~e~~~ky~~~~~  659 (736)
                      .....+.+.++++..+.-|+..+.++......
T Consensus       491 ~~~~~le~l~~El~~l~~e~~~lq~~~~~~~q  522 (980)
T KOG0980|consen  491 SQAKALESLRQELALLLIELEELQRTLSNLAQ  522 (980)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence            66666777777777777777777777544443

>cd01878 HflX HflX subfamily

Probab=97.21  E-value=0.00097  Score=67.28  Aligned_cols=59  Identities=32%  Similarity=0.441  Sum_probs=39.4

Q ss_pred             CCCEEEEEeeCCCCCChhHHHHHHhCCCCccccc----CCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           68 KEPIGVVSVCGRARQGKSFILNQLLGRSSGFQVA----STHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        68 ~~~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~----~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      +.++..|+|+|+.++|||+|+|.|++..  |.+.    ++..+.+..+.+         ++  ...+.|+||+|+.
T Consensus        38 ~~~~~~I~iiG~~g~GKStLl~~l~~~~--~~~~~~~~~t~~~~~~~~~~---------~~--~~~~~i~Dt~G~~  100 (204)
T cd01878          38 RSGIPTVALVGYTNAGKSTLFNALTGAD--VYAEDQLFATLDPTTRRLRL---------PD--GREVLLTDTVGFI  100 (204)
T ss_pred             hcCCCeEEEECCCCCCHHHHHHHHhcch--hccCCccceeccceeEEEEe---------cC--CceEEEeCCCccc
Confidence            3677899999999999999999999864  3222    222222222211         11  1368889999984

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=97.21  E-value=0.00068  Score=65.38  Aligned_cols=60  Identities=18%  Similarity=0.227  Sum_probs=44.3

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCC
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI  138 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~  138 (736)
                      |.|+|+.++|||+|+++|.+....|.   .....|.|+..+...++.  .+|..+.+.++||+|.
T Consensus         3 i~vvG~~~~GKtsl~~~l~~~~~~~~---~~~~~t~~~~~~~~~~~~--~~~~~~~l~i~Dt~G~   62 (164)
T cd04101           3 CAVVGDPAVGKTAFVQMFHSNGAVFP---KNYLMTTGCDFVVKEVPV--DTDNTVELFIFDSAGQ   62 (164)
T ss_pred             EEEECCCCCCHHHHHHHHhcCCCCcC---ccCCCceEEEEEEEEEEe--CCCCEEEEEEEECCCH
Confidence            78999999999999999986533342   334567888776554433  2466789999999994

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=97.20  E-value=1.3  Score=57.37  Aligned_cols=21  Identities=38%  Similarity=0.515  Sum_probs=17.8

Q ss_pred             EEEEeeCCCCCChhHHHHHHh
Q 004698           72 GVVSVCGRARQGKSFILNQLL   92 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~   92 (736)
                      +...|.|+.|||||++|..|+
T Consensus        25 g~~~~~G~NGsGKS~~lda~~   45 (1353)
T TIGR02680        25 GRLLLRGNNGAGKSKVLELLL   45 (1353)
T ss_pred             CeEEEECCCCCcHHHHHHHHH
Confidence            467789999999999999744

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=97.18  E-value=0.00063  Score=67.39  Aligned_cols=55  Identities=35%  Similarity=0.332  Sum_probs=39.6

Q ss_pred             EEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCC
Q 004698           72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI  138 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~  138 (736)
                      ..|+|+|.+++|||+|+|.|+|.. .+.+++.. .+|++ |-|.. +      +  ..+.|+||||+
T Consensus       118 ~~~~~vG~pnvGKSslin~l~~~~-~~~~~~~p-g~T~~-~~~~~-~------~--~~~~l~DtPGi  172 (172)
T cd04178         118 ITVGVVGFPNVGKSSLINSLKRSR-ACNVGATP-GVTKS-MQEVH-L------D--KKVKLLDSPGI  172 (172)
T ss_pred             cEEEEEcCCCCCHHHHHHHHhCcc-cceecCCC-CeEcc-eEEEE-e------C--CCEEEEECcCC
Confidence            468999999999999999999874 36666542 45666 34431 1      1  13789999995

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=97.18  E-value=0.0016  Score=63.04  Aligned_cols=57  Identities=23%  Similarity=0.265  Sum_probs=39.9

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      .|.|+|..++|||+|+|+|.+..  |.+.+. ...|.++-.+....       ..+.+.++||+|+.
T Consensus         2 ~i~~~G~~~~GKssli~~l~~~~--~~~~~~-~~~t~~~~~~~~~~-------~~~~~~i~Dt~G~~   58 (168)
T cd01897           2 TLVIAGYPNVGKSSLVNKLTRAK--PEVAPY-PFTTKSLFVGHFDY-------KYLRWQVIDTPGLL   58 (168)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCC--CccCCC-CCcccceeEEEEcc-------CceEEEEEECCCcC
Confidence            47899999999999999999876  443321 12355555544321       23679999999984

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=97.17  E-value=0.069  Score=50.59  Aligned_cols=125  Identities=18%  Similarity=0.283  Sum_probs=89.0

Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 004698          507 DQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKT  586 (736)
Q Consensus       507 ~~i~~e~~~L~~k~es~e~e~~~lk~~Le~~e~~~~e~~k~~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~  586 (736)
                      ..+..++..+....+.....+..++..++.......+++.+|+.++...    ......+..++.++..+...+..|...
T Consensus         6 ~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~H----a~~~~~L~~lr~e~~~~~~~~~~l~~~   81 (132)
T PF07926_consen    6 SSLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKH----AEDIKELQQLREELQELQQEINELKAE   81 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456677888888888888888999999888888888899999888766    333445566777777777777777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 004698          587 VDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALS  642 (736)
Q Consensus       587 le~lk~e~~e~~~~yee~~~~~~~~~~~~~~~i~~L~~k~~~~E~~~~~~~~q~~~  642 (736)
                      .++.+......+...+..       ...+.+++.+++.|+.++...+.-+..|+++
T Consensus        82 ~~~a~~~l~~~e~sw~~q-------k~~le~e~~~~~~r~~dL~~QN~lLh~QlE~  130 (132)
T PF07926_consen   82 AESAKAELEESEASWEEQ-------KEQLEKELSELEQRIEDLNEQNKLLHDQLES  130 (132)
T ss_pred             HHHHHHHHHHHHHhHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            777777766665555432       3355666666666666666677666666654

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>cd00880 Era_like Era (E

Probab=97.15  E-value=0.00099  Score=62.48  Aligned_cols=59  Identities=32%  Similarity=0.428  Sum_probs=36.2

Q ss_pred             eeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcccC
Q 004698           76 VCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYD  142 (736)
Q Consensus        76 v~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~~  142 (736)
                      |+|+.++|||+|+|.|++..  +.......++|...-.....+      +....+.++||+|+....
T Consensus         1 i~G~~gsGKstl~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~Dt~g~~~~~   59 (163)
T cd00880           1 LFGRTNAGKSSLLNALLGQE--VAIVSPVPGTTTDPVEYVWEL------GPLGPVVLIDTPGIDEAG   59 (163)
T ss_pred             CcCCCCCCHHHHHHHHhCcc--ccccCCCCCcEECCeEEEEEe------cCCCcEEEEECCCCCccc
Confidence            68999999999999999874  221122223333332222111      113568999999986544

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=97.15  E-value=0.13  Score=62.62  Aligned_cols=207  Identities=9%  Similarity=0.088  Sum_probs=100.9

Q ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 004698          516 LMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAIN---DK-KKLADDYTSRINNLQGENISLREKSSSLSKTVDSLK  591 (736)
Q Consensus       516 L~~k~es~e~e~~~lk~~Le~~e~~~~e~~k~~e~~In---~l-kk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk  591 (736)
                      .....+-++..+..+++++++++..+++|++.+...-.   .+ ...+.++..+++..+.+...++.+...++..+....
T Consensus       192 ~~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~~~~l~~~~~~~~~~~~L~~l~~ql~~a~~~~~~a~a~~~~l~~~l~~~~  271 (754)
T TIGR01005       192 NTAAADFLAPEIADLSKQSRDAEAEVAAYRAQSDLLMGNNATLATQQLAELNTELSRARANRAAAEGTADSVKKALQNGG  271 (754)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            33445556667777777777777777777653321100   00 122333333333333333333333333333322111


Q ss_pred             HHHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698          592 NEISDWKRKYDQVLT--KQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAA  669 (736)
Q Consensus       592 ~e~~e~~~~yee~~~--~~~~~~~~~~~~i~~L~~k~~~~E~~~~~~~~q~~~~~~E~~e~~~ky~~~~~e~kalle~~~  669 (736)
                      ...    .......+  ........+..++.+++.++..+..+..+-.-++..++.++.+++..++..+.+....++...
T Consensus       272 ~~~----~~~~~~~~~~~~~~~i~~L~~~l~~l~~~~~~l~~~y~~~hP~v~~l~~qi~~l~~~i~~e~~~~~~~~~~~~  347 (754)
T TIGR01005       272 SLD----VLPEVLSSQLKLEDLIQRLRERQAELRATIADLSTTMLANHPRVVAAKSSLADLDAQIRSELQKITKSLLMQA  347 (754)
T ss_pred             Ccc----chhhhhcCcccccHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            000    00000000  000122334444444444444444455555566777777777777766655555444444333


Q ss_pred             HHHHHhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhhh
Q 004698          670 IVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKVSFF  727 (736)
Q Consensus       670 ~~~e~~~e~~~~~~~~l~~e~~~~~~e~~~~~~~~~~k~~~~~~~~~~~~~~l~~~~~  727 (736)
                      .......+..+.+++.++.++..+ .....++.+++..++-.++-...++.++++...
T Consensus       348 ~~a~~~~~~L~~~l~~~~~~~~~~-~~~~~e~~~L~Re~~~~~~~Y~~ll~r~~e~~~  404 (754)
T TIGR01005       348 DAAQARESQLVSDVNQLKAASAQA-GEQQVDLDALQRDAAAKRQLYESYLTNYRQAAS  404 (754)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344444555555555555432 233456778888888888888888777776544

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=97.14  E-value=0.00073  Score=71.24  Aligned_cols=65  Identities=23%  Similarity=0.292  Sum_probs=46.1

Q ss_pred             CCEEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcccC
Q 004698           69 EPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYD  142 (736)
Q Consensus        69 ~~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~~  142 (736)
                      ..+-=|+|+|++..|||+|-|+++|+. .|.++..+..+|.-|---+.       .| +..++|+||||+-+..
T Consensus        70 ~k~L~vavIG~PNvGKStLtN~mig~k-v~~vS~K~~TTr~~ilgi~t-------s~-eTQlvf~DTPGlvs~~  134 (379)
T KOG1423|consen   70 QKSLYVAVIGAPNVGKSTLTNQMIGQK-VSAVSRKVHTTRHRILGIIT-------SG-ETQLVFYDTPGLVSKK  134 (379)
T ss_pred             ceEEEEEEEcCCCcchhhhhhHhhCCc-cccccccccceeeeeeEEEe-------cC-ceEEEEecCCcccccc
Confidence            466679999999999999999999985 46676555544443322111       12 3679999999986543

>PRK09039 hypothetical protein; Validated

Probab=97.13  E-value=0.1  Score=57.45  Aligned_cols=123  Identities=17%  Similarity=0.188  Sum_probs=67.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698          574 ISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRK  653 (736)
Q Consensus       574 ~sl~~r~~~L~~~le~lk~e~~e~~~~yee~~~~~~~~~~~~~~~i~~L~~k~~~~E~~~~~~~~q~~~~~~E~~e~~~k  653 (736)
                      ..++.++..+..+++.++.....+...|.....    .....+.+...|+.++.......+++..+...++++++.+|..
T Consensus        77 ~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~----~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Q  152 (343)
T PRK09039         77 QDLQDSVANLRASLSAAEAERSRLQALLAELAG----AGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQ  152 (343)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh----hcchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            344455555555555555555555555552211    1123444445555555555556666666777777776555544


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 004698          654 YGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKI  708 (736)
Q Consensus       654 y~~~~~e~kalle~~~~~~e~~~e~~~~~~~~l~~e~~~~~~e~~~~~~~~~~k~  708 (736)
                              -+.++.++...|....+++.+.+.|+.++..++++...++......+
T Consensus       153 --------la~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~~~~~l~~~~~~~  199 (343)
T PRK09039        153 --------LAALEAALDASEKRDRESQAKIADLGRRLNVALAQRVQELNRYRSEF  199 (343)
T ss_pred             --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence                    24445555555555566666666666666666655444444444444

>cd01898 Obg Obg subfamily

Probab=97.13  E-value=0.0019  Score=62.61  Aligned_cols=54  Identities=22%  Similarity=0.261  Sum_probs=35.2

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccC---CCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVAS---THRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~---~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      |+|+|..++|||+|+|.|.|..  ..++.   +....+.|.-.+         ++ ...+.|+||+|+.
T Consensus         3 v~ivG~~~~GKStl~~~l~~~~--~~v~~~~~~t~~~~~~~~~~---------~~-~~~~~l~DtpG~~   59 (170)
T cd01898           3 VGLVGLPNAGKSTLLSAISNAK--PKIADYPFTTLVPNLGVVRV---------DD-GRSFVVADIPGLI   59 (170)
T ss_pred             eEEECCCCCCHHHHHHHHhcCC--ccccCCCccccCCcceEEEc---------CC-CCeEEEEecCccc
Confidence            7899999999999999999864  22221   111223344322         11 1368899999984

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=97.12  E-value=0.0011  Score=66.86  Aligned_cols=96  Identities=19%  Similarity=0.173  Sum_probs=48.8

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCC---cccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcccCCCCccchH
Q 004698           74 VSVCGRARQGKSFILNQLLGRSS---GFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYDQTGTYSTQ  150 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~---gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~~~~~~~d~~  150 (736)
                      |+|+|+.++|||+|+|.|+|...   |-.+.. .-.+|.-+    .++..  ++  ...+.++||+|++......  +.-
T Consensus         4 I~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~-~~~~t~~~----~~~~~--~~--~~~l~l~DtpG~~~~~~~~--~~~   72 (197)
T cd04104           4 IAVTGESGAGKSSFINALRGVGHEEEGAAPTG-VVETTMKR----TPYPH--PK--FPNVTLWDLPGIGSTAFPP--DDY   72 (197)
T ss_pred             EEEECCCCCCHHHHHHHHhccCCCCCCccccC-ccccccCc----eeeec--CC--CCCceEEeCCCCCcccCCH--HHH
Confidence            78999999999999999998531   111100 11122111    11111  11  2357889999987433221  111


Q ss_pred             HHHHhhhccceEEEccCCCCchHHhhhhHH
Q 004698          151 IFSLAVLLSSMFIYNQMGGIDESAIDRLSL  180 (736)
Q Consensus       151 IFaLa~LLSS~~IyN~~g~i~e~~l~~L~~  180 (736)
                      +-.+...=..++|+-..+.+.+.+...+..
T Consensus        73 l~~~~~~~~d~~l~v~~~~~~~~d~~~~~~  102 (197)
T cd04104          73 LEEMKFSEYDFFIIISSTRFSSNDVKLAKA  102 (197)
T ss_pred             HHHhCccCcCEEEEEeCCCCCHHHHHHHHH
Confidence            111111113556665555666655544443

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.10  E-value=0.78  Score=51.96  Aligned_cols=164  Identities=13%  Similarity=0.140  Sum_probs=96.2

Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 004698          512 ERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYD----DAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTV  587 (736)
Q Consensus       512 e~~~L~~k~es~e~e~~~lk~~Le~~e~~~~e~~k~~e----~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~l  587 (736)
                      ++..|+.+|+.++++.+..+..++....+...|...+.    ..+..-..+++.-.++-..+-.++-.++..+..++..|
T Consensus        44 eK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hkk~~~~g~e~EesLLqESaakE~~yl~kI~eleneLKq~r~el  123 (772)
T KOG0999|consen   44 EKEDLKQQLEELEAEYDLARTELDQTKEALGQYRSQHKKVARDGEEREESLLQESAAKEEYYLQKILELENELKQLRQEL  123 (772)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            48899999999999999999999999999888873222    22222233333333333333333444444444444444


Q ss_pred             HHHHHHHHHHHHHH----------HHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Q 004698          588 DSLKNEISDWKRKY----------DQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSA---QEEVEEWKRKY  654 (736)
Q Consensus       588 e~lk~e~~e~~~~y----------ee~~~~~~~~~~~~~~~i~~L~~k~~~~E~~~~~~~~q~~~~---~~E~~e~~~ky  654 (736)
                      ...+.|..-+.+..          +..--..|.+..+|+-+=+-|-+-|+.+|+.+-.+.++.-++   |=|++-+|+-.
T Consensus       124 ~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQKqVs~LR~sQVEyEglkhei  203 (772)
T KOG0999|consen  124 TNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEENISLQKQVSNLRQSQVEYEGLKHEI  203 (772)
T ss_pred             HHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhhhhhhhhHHHHHH
Confidence            44443333333333          333333344444555555555568999999977777776555   44666777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhh
Q 004698          655 GVAVREAKAALEKAAIVQERTS  676 (736)
Q Consensus       655 ~~~~~e~kalle~~~~~~e~~~  676 (736)
                      .++.++. .+|....+...+..
T Consensus       204 kRleEe~-elln~q~ee~~~Lk  224 (772)
T KOG0999|consen  204 KRLEEET-ELLNSQLEEAIRLK  224 (772)
T ss_pred             HHHHHHH-HHHHHHHHHHHHHH
Confidence            7777766 55555554444333

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=97.09  E-value=0.00098  Score=62.50  Aligned_cols=57  Identities=32%  Similarity=0.461  Sum_probs=39.8

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCC
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI  138 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~  138 (736)
                      |+++|..++|||+|+|.|++..  |..... ...|..+|.....+     ++..+.+.++||+|.
T Consensus         4 i~~~G~~~~GKstl~~~l~~~~--~~~~~~-~~~~~~~~~~~~~~-----~~~~~~~~~~D~~G~   60 (161)
T TIGR00231         4 IVIVGDPNVGKSTLLNRLLGNK--FITEYK-PGTTRNYVTTVIEE-----DGKTYKFNLLDTAGQ   60 (161)
T ss_pred             EEEECCCCCCHHHHHHHHhCCC--CcCcCC-CCceeeeeEEEEEE-----CCEEEEEEEEECCCc
Confidence            7899999999999999999876  544332 23445555533221     343467899999994

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>PF15066 CAGE1: Cancer-associated gene protein 1 family

Probab=97.08  E-value=0.52  Score=52.43  Aligned_cols=155  Identities=19%  Similarity=0.256  Sum_probs=77.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 004698          546 KRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSL-------KNEISDWKRKYDQVLTKQKAMEDQVCSE  618 (736)
Q Consensus       546 k~~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~l-------k~e~~e~~~~yee~~~~~~~~~~~~~~~  618 (736)
                      +-+-+.||.++..++.+..++-....+...++..++.|..-+...       +.+..-+....+.........+++|..+
T Consensus       358 qvfvDiinkLk~niEeLIedKY~viLEKnd~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~e  437 (527)
T PF15066_consen  358 QVFVDIINKLKENIEELIEDKYRVILEKNDIEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMTE  437 (527)
T ss_pred             hHHHHHHHHHHHHHHHHHHhHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            445667777777777666666444444444444444444444444       4444444444444444444445555555


Q ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH---HhhHHHHHHHHHHHHHHHhhH
Q 004698          619 IEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAA-IVQE---RTSKEMQQREDVLREEFSSTL  694 (736)
Q Consensus       619 i~~L~~k~~~~E~~~~~~~~q~~~~~~E~~e~~~ky~~~~~e~kalle~~~-~~~e---~~~e~~~~~~~~l~~e~~~~~  694 (736)
                      |.   .|-..+ -.|..+.+.+-....|+.-        .-..|..||+|. +.++   |.-+..+.+.-.|.++|....
T Consensus       438 iQ---qKnksv-sqclEmdk~LskKeeever--------LQ~lkgelEkat~SALdlLkrEKe~~EqefLslqeEfQk~e  505 (527)
T PF15066_consen  438 IQ---QKNKSV-SQCLEMDKTLSKKEEEVER--------LQQLKGELEKATTSALDLLKREKETREQEFLSLQEEFQKHE  505 (527)
T ss_pred             HH---HhhhHH-HHHHHHHHHhhhhHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44   111111 0122222222222222211        112355566665 4444   444444555557788888777


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 004698          695 AEKEEEMKEKATKIEHAE  712 (736)
Q Consensus       695 ~e~~~~~~~~~~k~~~~~  712 (736)
                      ++.-.+-..+-.+++++.
T Consensus       506 kenl~ERqkLKs~leKLv  523 (527)
T PF15066_consen  506 KENLEERQKLKSRLEKLV  523 (527)
T ss_pred             HhhHHHHHHHHHHHHHHH
Confidence            776666666666666653

>PRK09039 hypothetical protein; Validated

Probab=97.06  E-value=0.2  Score=55.20  Aligned_cols=109  Identities=17%  Similarity=0.220  Sum_probs=70.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhh
Q 004698          546 KRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSR  625 (736)
Q Consensus       546 k~~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~yee~~~~~~~~~~~~~~~i~~L~~k  625 (736)
                      .+++..+.+++..++.++.+...|+............++..+..+..+..+.+..|.+    .+.....++++|+.|+.+
T Consensus        77 ~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~~~~~~~~~l~~~L~~~k~~~se----~~~~V~~L~~qI~aLr~Q  152 (343)
T PRK09039         77 QDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQELDSEKQVSAR----ALAQVELLNQQIAALRRQ  152 (343)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHHHHHH
Confidence            4677777777777777777777777765544444444555555555555555555543    344456688888888888


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698          626 STAAEARLAAAREQALSAQEEVEEWKRKYGVAV  658 (736)
Q Consensus       626 ~~~~E~~~~~~~~q~~~~~~E~~e~~~ky~~~~  658 (736)
                      +..+|+.+++++.+-...+..+.++++..+.++
T Consensus       153 la~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~  185 (343)
T PRK09039        153 LAALEAALDASEKRDRESQAKIADLGRRLNVAL  185 (343)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888888887777666666655554444444

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=97.05  E-value=1.3  Score=53.65  Aligned_cols=49  Identities=16%  Similarity=0.097  Sum_probs=35.9

Q ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698          610 AMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAV  658 (736)
Q Consensus       610 ~~~~~~~~~i~~L~~k~~~~E~~~~~~~~q~~~~~~E~~e~~~ky~~~~  658 (736)
                      ...+...+++.........+|-.+..+.+....+..++..+..||+-+-
T Consensus       892 ~~~e~~~~e~~~~~l~~kkle~e~~~~~~e~~~~~k~v~~l~~k~~wi~  940 (1174)
T KOG0933|consen  892 TSQEKCLSEKSDGELERKKLEHEVTKLESEKANARKEVEKLLKKHEWIG  940 (1174)
T ss_pred             hHHHHHHHHhhcccchHHHHHhHHHHhhhhHHHHHHHHHHHHHhccchh
Confidence            3344555555555567777788888888888888888888888887765

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=97.04  E-value=0.0019  Score=61.21  Aligned_cols=60  Identities=27%  Similarity=0.413  Sum_probs=36.6

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCccc
Q 004698           73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAY  141 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~  141 (736)
                      -|+++|+.++|||+|+|.|++..  +.......++|.-+.  ...+.   .+  ...+.++||+|+...
T Consensus         3 ~i~l~G~~~~GKstli~~l~~~~--~~~~~~~~~~~~~~~--~~~~~---~~--~~~~~i~DtpG~~~~   62 (157)
T cd04164           3 KVVIVGKPNVGKSSLLNALAGRD--RAIVSDIAGTTRDVI--EESID---IG--GIPVRLIDTAGIRET   62 (157)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCc--eEeccCCCCCccceE--EEEEE---eC--CEEEEEEECCCcCCC
Confidence            37899999999999999999875  222111222232211  11111   11  246889999998643

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>PRK12289 GTPase RsgA; Reviewed

Probab=97.03  E-value=0.0008  Score=74.08  Aligned_cols=60  Identities=28%  Similarity=0.423  Sum_probs=39.5

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCCCcccccCCC------CCccceEEeeccccccccCCCCceEEEEeecCCCcccCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTH------RPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYDQ  143 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~------~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~~~  143 (736)
                      ++.|+|+.+.|||+|+|.|++.. ...++...      .-+|+.+-++..      ++|    .+|+||||+..++.
T Consensus       174 i~v~iG~SgVGKSSLIN~L~~~~-~~~t~~vs~~~~rGrHTT~~~~l~~l------~~g----~~liDTPG~~~~~l  239 (352)
T PRK12289        174 ITVVAGPSGVGKSSLINRLIPDV-ELRVGKVSGKLGRGRHTTRHVELFEL------PNG----GLLADTPGFNQPDL  239 (352)
T ss_pred             eEEEEeCCCCCHHHHHHHHcCcc-ccccccccCCCCCCCCcCceeEEEEC------CCC----cEEEeCCCcccccc
Confidence            47899999999999999999763 12232211      124666655432      233    27899999965544

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=97.01  E-value=0.17  Score=48.18  Aligned_cols=123  Identities=19%  Similarity=0.172  Sum_probs=80.7

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 004698          560 DDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQ  639 (736)
Q Consensus       560 e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~yee~~~~~~~~~~~~~~~i~~L~~k~~~~E~~~~~~~~q  639 (736)
                      -++.++....+.+.+++.+++-.|..+++....+........+    .++++.+.++.+|..+....+.++..+.+.++.
T Consensus         6 l~v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daE----n~k~eie~L~~el~~lt~el~~L~~EL~~l~sE   81 (140)
T PF10473_consen    6 LHVEEKLKESESEKDSLEDHVESLERELEMSQENKECLILDAE----NSKAEIETLEEELEELTSELNQLELELDTLRSE   81 (140)
T ss_pred             HHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556666677777777777777787777777766665555444    577778888888888888888888888888877


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhH
Q 004698          640 ALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTL  694 (736)
Q Consensus       640 ~~~~~~E~~e~~~ky~~~~~e~kalle~~~~~~e~~~e~~~~~~~~l~~e~~~~~  694 (736)
                      -+.+.+++.+|+.+...+..        ......+.++.++..-..+.++++...
T Consensus        82 k~~L~k~lq~~q~kv~eLE~--------~~~~~~~~l~~~E~ek~q~~e~~~~~v  128 (140)
T PF10473_consen   82 KENLDKELQKKQEKVSELES--------LNSSLENLLQEKEQEKVQLKEESKSAV  128 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHH--------HhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777777666666554433        333444444444444344444444433

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>cd04171 SelB SelB subfamily

Probab=97.00  E-value=0.001  Score=63.73  Aligned_cols=23  Identities=22%  Similarity=0.534  Sum_probs=21.2

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      ||+|+|.+++|||+|+|+|.|..
T Consensus         2 ~i~i~G~~~~GKssl~~~l~~~~   24 (164)
T cd04171           2 IIGTAGHIDHGKTTLIKALTGIE   24 (164)
T ss_pred             EEEEEecCCCCHHHHHHHHhCcc
Confidence            79999999999999999999753

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>cd04142 RRP22 RRP22 subfamily

Probab=96.98  E-value=0.0028  Score=64.08  Aligned_cols=59  Identities=31%  Similarity=0.494  Sum_probs=39.1

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA  140 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~  140 (736)
                      |+|+|..++|||.|+|++++..  |.-.  ..| |.|.-.+...+   ..+|..+.+.++||+|+..
T Consensus         3 I~ivG~~~vGKTsLi~~~~~~~--f~~~--~~p-t~~~~~~~~~i---~~~~~~~~l~i~Dt~G~~~   61 (198)
T cd04142           3 VAVLGAPGVGKTAIVRQFLAQE--FPEE--YIP-TEHRRLYRPAV---VLSGRVYDLHILDVPNMQR   61 (198)
T ss_pred             EEEECCCCCcHHHHHHHHHcCC--CCcc--cCC-ccccccceeEE---EECCEEEEEEEEeCCCccc
Confidence            7899999999999999999865  5321  122 32322221111   1246668899999999754

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd01890 LepA LepA subfamily

Probab=96.98  E-value=0.0025  Score=62.45  Aligned_cols=67  Identities=24%  Similarity=0.330  Sum_probs=37.7

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCccccc-------CCC-CCccceEEeecccccc--ccCCCCceEEEEeecCCCcc
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVA-------STH-RPCTKGLWLWSAPLKR--TALDGTEYNLLLLDSEGIDA  140 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~-------~~~-~~~T~Giw~w~~p~~~--~~~~g~~~~v~llDteG~~~  140 (736)
                      |+++|..++|||+|+|+|++....|.-+       ++. ...+.|+=........  ...++..+.+.|+||+|...
T Consensus         3 i~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~   79 (179)
T cd01890           3 FSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVD   79 (179)
T ss_pred             EEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChh
Confidence            7899999999999999999753222110       000 0012233222111100  00135568899999999753

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=96.97  E-value=1.3  Score=52.24  Aligned_cols=66  Identities=17%  Similarity=0.200  Sum_probs=29.1

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhh
Q 004698          561 DYTSRINNLQGENISLREKSSSLSKTVDSLK---NEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRS  626 (736)
Q Consensus       561 ~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk---~e~~e~~~~yee~~~~~~~~~~~~~~~i~~L~~k~  626 (736)
                      ++.-.+-.-..+..+..+.+..|+++.+.+.   ..+.+.++..++.+......+.+.+.+|++|+++.
T Consensus       334 dirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQidelKn~i  402 (1265)
T KOG0976|consen  334 DIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQIDELKNHI  402 (1265)
T ss_pred             HHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3333333333444444444444444443333   22333333334444444444555566666666643

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=96.97  E-value=0.0014  Score=62.65  Aligned_cols=57  Identities=23%  Similarity=0.318  Sum_probs=37.7

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCccc
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAY  141 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~  141 (736)
                      |+++|..++|||+|+|.|++... ....++...+|.-++.+..+       +   .+.++||+|++..
T Consensus         2 i~l~G~~g~GKTtL~~~l~~~~~-~~~~~~~~~~t~~~~~~~~~-------~---~~~~~D~~g~~~~   58 (170)
T cd01876           2 IAFAGRSNVGKSSLINALTNRKK-LARTSKTPGKTQLINFFNVN-------D---KFRLVDLPGYGYA   58 (170)
T ss_pred             EEEEcCCCCCHHHHHHHHhcCCc-eeeecCCCCcceeEEEEEcc-------C---eEEEecCCCcccc
Confidence            78999999999999999995431 11112223345555554321       1   6889999998654

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.96  E-value=1.3  Score=52.17  Aligned_cols=154  Identities=21%  Similarity=0.231  Sum_probs=76.4

Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHH------
Q 004698          563 TSRINNLQGENISLREKSSSLSKTV-------DSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAA------  629 (736)
Q Consensus       563 e~~~~~Le~k~~sl~~r~~~L~~~l-------e~lk~e~~e~~~~yee~~~~~~~~~~~~~~~i~~L~~k~~~~------  629 (736)
                      .+++.+|+.+++.|..++..|...|       -..|.++.+++..-+-.++    +.++++.+|.+++.++..+      
T Consensus       436 nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~is----ei~qlqarikE~q~kl~~l~~Ekq~  511 (1118)
T KOG1029|consen  436 NAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMIS----EIDQLQARIKELQEKLQKLAPEKQE  511 (1118)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHH----HHHHHHHHHHHHHHHHHhhhhHHHH
Confidence            3344444444444444444444444       3444566666555544333    2345555555555543322      


Q ss_pred             -HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 004698          630 -EARLAAAREQA---LSAQEEVEEWKRKYGVAVREAKAALEKAAIVQE---RTSKEMQQREDVLREEFSSTLAEKEEEMK  702 (736)
Q Consensus       630 -E~~~~~~~~q~---~~~~~E~~e~~~ky~~~~~e~kalle~~~~~~e---~~~e~~~~~~~~l~~e~~~~~~e~~~~~~  702 (736)
                       +.++.......   ..-++++.-.+++-+-+....|..++....+.+   ..++....++..|++...+.+-.+...+|
T Consensus       512 l~~qlkq~q~a~~~~~~~~s~L~aa~~~ke~irq~ikdqldelskE~esk~~eidi~n~qlkelk~~~~~q~lake~~yk  591 (1118)
T KOG1029|consen  512 LNHQLKQKQSAHKETTQRKSELEAARRKKELIRQAIKDQLDELSKETESKLNEIDIFNNQLKELKEDVNSQQLAKEELYK  591 (1118)
T ss_pred             HHHHHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             22211111110   111334444444444455545544444444444   33444555666777777776666666677


Q ss_pred             HHHHHHHHHHHHHhhHHH
Q 004698          703 EKATKIEHAEQCLTTLRL  720 (736)
Q Consensus       703 ~~~~k~~~~~~~~~~~~~  720 (736)
                      ..-.|+.+++.+.-.|.-
T Consensus       592 ~e~d~~ke~et~~lel~~  609 (1118)
T KOG1029|consen  592 NERDKLKEAETKALELIG  609 (1118)
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            777777777766555544

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=96.95  E-value=0.0013  Score=62.63  Aligned_cols=55  Identities=25%  Similarity=0.346  Sum_probs=35.8

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      .|.++|..++|||+|+|.|++... ..++... .+|+... |   +..   ++   .+.++||+|+.
T Consensus        85 ~~~~~G~~~vGKstlin~l~~~~~-~~~~~~~-~~~~~~~-~---~~~---~~---~~~i~DtpG~~  139 (141)
T cd01857          85 TIGLVGYPNVGKSSLINALVGKKK-VSVSATP-GKTKHFQ-T---IFL---TP---TITLCDCPGLV  139 (141)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCc-eeeCCCC-CcccceE-E---EEe---CC---CEEEEECCCcC
Confidence            577899999999999999998752 2333322 2344322 2   111   12   37899999974

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>PRK15494 era GTPase Era; Provisional

Probab=96.95  E-value=0.0013  Score=72.34  Aligned_cols=58  Identities=24%  Similarity=0.450  Sum_probs=39.9

Q ss_pred             CCEEEEEeeCCCCCChhHHHHHHhCCCCcccc-cCCCC---CccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           69 EPIGVVSVCGRARQGKSFILNQLLGRSSGFQV-ASTHR---PCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        69 ~~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~-~~~~~---~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      .+..-|+|+|..++|||+|+|.|+|..  |.. ++...   ....|++.|.         |  ..++|+||+|+.
T Consensus        50 ~k~~kV~ivG~~nvGKSTLin~l~~~k--~~ivs~k~~tTr~~~~~~~~~~---------~--~qi~~~DTpG~~  111 (339)
T PRK15494         50 QKTVSVCIIGRPNSGKSTLLNRIIGEK--LSIVTPKVQTTRSIITGIITLK---------D--TQVILYDTPGIF  111 (339)
T ss_pred             cceeEEEEEcCCCCCHHHHHHHHhCCc--eeeccCCCCCccCcEEEEEEeC---------C--eEEEEEECCCcC
Confidence            355679999999999999999999875  432 22221   1223555542         2  458999999974

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=96.94  E-value=0.0015  Score=65.11  Aligned_cols=59  Identities=24%  Similarity=0.271  Sum_probs=39.7

Q ss_pred             CEEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        70 ~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      .+.-|+|+|..++|||+|+|.|++...-..+.++ -.+|..+-.+..          ...+.|+||+|++
T Consensus        23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~-~~~t~~~~~~~~----------~~~l~l~DtpG~~   81 (196)
T PRK00454         23 DGPEIAFAGRSNVGKSSLINALTNRKNLARTSKT-PGRTQLINFFEV----------NDKLRLVDLPGYG   81 (196)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCC-CCceeEEEEEec----------CCeEEEeCCCCCC
Confidence            3445999999999999999999986411122222 245665543321          1468999999975

>PRK12288 GTPase RsgA; Reviewed

Probab=96.92  E-value=0.00081  Score=73.97  Aligned_cols=58  Identities=26%  Similarity=0.367  Sum_probs=36.4

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCCCcccccCCC-----CCc-cceEEeeccccccccCCCCceEEEEeecCCCccc
Q 004698           73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTH-----RPC-TKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAY  141 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~-----~~~-T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~  141 (736)
                      ++.++|+.+.|||+|+|.|+|.. ...+|.-.     ..+ |+..-+..-      +.|    .+|+||||+..+
T Consensus       207 i~~~vG~sgVGKSTLiN~Ll~~~-~~~t~~is~~~~rGrHTT~~~~l~~l------~~~----~~liDTPGir~~  270 (347)
T PRK12288        207 ISIFVGQSGVGKSSLINALLPEA-EILVGDVSDNSGLGQHTTTAARLYHF------PHG----GDLIDSPGVREF  270 (347)
T ss_pred             CEEEECCCCCCHHHHHHHhcccc-ceeeccccCcCCCCcCceeeEEEEEe------cCC----CEEEECCCCCcc
Confidence            46789999999999999999863 23333221     122 434333322      222    258999998644

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=96.92  E-value=0.56  Score=48.70  Aligned_cols=37  Identities=16%  Similarity=0.301  Sum_probs=21.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 004698          555 KKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLK  591 (736)
Q Consensus       555 lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk  591 (736)
                      ++..+++++.+...++.++..+.+|+..++..+.+.+
T Consensus        50 ~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~   86 (239)
T COG1579          50 LEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVK   86 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            3444566666666666666666666666665554443

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=96.91  E-value=1.4  Score=54.41  Aligned_cols=40  Identities=18%  Similarity=0.354  Sum_probs=32.3

Q ss_pred             ceeeCHHHHHHhhccC-CCEEEEEeeCCCCCChhHHHHHHh
Q 004698           53 KFRMDPEAVAALQLVK-EPIGVVSVCGRARQGKSFILNQLL   92 (736)
Q Consensus        53 ~l~l~~eAl~~L~~i~-~~v~vVsv~G~~rtGKS~LlN~l~   92 (736)
                      .++++.+=.++|..|. +-.+=|.++-..+|||=|-|-.|-
T Consensus        69 ~lrl~~~DfeilKvIGrGaFGEV~lVr~k~t~~VYAMK~ln  109 (1317)
T KOG0612|consen   69 ELRLKAEDFEILKVIGRGAFGEVALVRHKSTEKVYAMKILN  109 (1317)
T ss_pred             HHhCCHHhhHHHHHhcccccceeEEEEeeccccchhHHHhh
Confidence            5778888888888775 677788888889999999887753

>TIGR02977 phageshock_pspA phage shock protein A

Probab=96.90  E-value=0.58  Score=48.24  Aligned_cols=117  Identities=15%  Similarity=0.195  Sum_probs=72.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHhhHHHHHHHHHHHHH
Q 004698          551 AINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQV--------LTKQKAMEDQVCSEIEVL  622 (736)
Q Consensus       551 ~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~yee~--------~~~~~~~~~~~~~~i~~L  622 (736)
                      +...+...+.+++..+...+..+-.+......++.+++.....+..|..+.+..        +..+=.....++..+..|
T Consensus        25 P~~~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~~k~~~~~~~~~l  104 (219)
T TIGR02977        25 PEKMIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLARAALIEKQKAQELAEAL  104 (219)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            333333334444444445555555556666666677777777777777776333        333333344556666677


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698          623 KSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEK  667 (736)
Q Consensus       623 ~~k~~~~E~~~~~~~~q~~~~~~E~~e~~~ky~~~~~e~kalle~  667 (736)
                      +..+..+...+..+..++..++..+.+++.|-+.+..+.+.+--+
T Consensus       105 ~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~  149 (219)
T TIGR02977       105 ERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSR  149 (219)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777777777777777888888888888888877777666554443

Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=96.90  E-value=0.0015  Score=73.11  Aligned_cols=57  Identities=23%  Similarity=0.269  Sum_probs=41.3

Q ss_pred             EEEEEeeCCCCCChhHHHHHHhCCCCcccccC---CCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVAS---THRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        71 v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~---~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      ++=|+++|.+.+|||+|||.|.+...  .+++   |+.....|++.+.        +  ...++|+||||+.
T Consensus       159 iadValVG~PNaGKSTLln~Lt~~k~--~vs~~p~TT~~p~~Giv~~~--------~--~~~i~~vDtPGi~  218 (390)
T PRK12298        159 LADVGLLGLPNAGKSTFIRAVSAAKP--KVADYPFTTLVPNLGVVRVD--------D--ERSFVVADIPGLI  218 (390)
T ss_pred             cccEEEEcCCCCCHHHHHHHHhCCcc--cccCCCCCccCcEEEEEEeC--------C--CcEEEEEeCCCcc
Confidence            55699999999999999999998652  3332   3334456777653        1  1358999999984

>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]

Probab=96.90  E-value=1  Score=50.12  Aligned_cols=86  Identities=24%  Similarity=0.261  Sum_probs=52.6

Q ss_pred             HHHHHHHHHHHHHHHHHH--HHHHH-HHHHHHHHHHhhHHHHHHHHHHHHHHHhhHHHH-------HHHHHHHHHHHHHH
Q 004698          642 SAQEEVEEWKRKYGVAVR--EAKAA-LEKAAIVQERTSKEMQQREDVLREEFSSTLAEK-------EEEMKEKATKIEHA  711 (736)
Q Consensus       642 ~~~~E~~e~~~ky~~~~~--e~kal-le~~~~~~e~~~e~~~~~~~~l~~e~~~~~~e~-------~~~~~~~~~k~~~~  711 (736)
                      ..+.-+.|++++.+..+-  +-|.. ||.++...+..+.+++.++..++.++.++..+.       +.+....-+.++..
T Consensus       459 ~I~~~i~eln~~i~~~~~~e~nksi~Lee~i~~~~~~i~El~~~l~~~e~~L~~a~s~~~~~ke~~e~e~~a~~~E~ekl  538 (622)
T COG5185         459 SIKKSILELNDEIQERIKTEENKSITLEEDIKNLKHDINELTQILEKLELELSEANSKFELSKEENERELVAQRIEIEKL  538 (622)
T ss_pred             hHHHHHHHHhHHHHHHHHHHhccceeHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            345556677777776543  33444 666666666666666666666666666665444       33344455667777


Q ss_pred             HHHHhhHHHHhhhhhh
Q 004698          712 EQCLTTLRLELKVSFF  727 (736)
Q Consensus       712 ~~~~~~~~~~l~~~~~  727 (736)
                      |++|..++...+.+..
T Consensus       539 E~el~~lnL~s~ts~l  554 (622)
T COG5185         539 EKELNDLNLLSKTSIL  554 (622)
T ss_pred             HHHHHHhhhhccchHh
Confidence            7777777765554443

>cd01861 Rab6 Rab6 subfamily

Probab=96.89  E-value=0.0016  Score=62.54  Aligned_cols=57  Identities=23%  Similarity=0.341  Sum_probs=37.3

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCC
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI  138 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~  138 (736)
                      |.++|+.++|||+|+|.|++..  |....   +.|.|+-.-...+.   -+|..+.+.++||+|.
T Consensus         3 i~liG~~~~GKSsli~~l~~~~--~~~~~---~~~~~~~~~~~~~~---~~~~~~~l~~~D~~G~   59 (161)
T cd01861           3 LVFLGDQSVGKTSIITRFMYDT--FDNQY---QATIGIDFLSKTMY---LEDKTVRLQLWDTAGQ   59 (161)
T ss_pred             EEEECCCCCCHHHHHHHHHcCC--CCccC---CCceeeeEEEEEEE---ECCEEEEEEEEECCCc
Confidence            7899999999999999999876  54321   22344321111111   1244577899999994

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=96.87  E-value=1.5  Score=51.27  Aligned_cols=36  Identities=25%  Similarity=0.325  Sum_probs=24.2

Q ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698          569 LQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQV  604 (736)
Q Consensus       569 Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~yee~  604 (736)
                      ++.++.++..++..--..|++.++++..++..|...
T Consensus       114 ~k~ele~~~~q~~~~~~eL~~~k~EL~~lr~e~~~~  149 (522)
T PF05701_consen  114 WKAELESAREQYASAVAELDSVKQELEKLRQELASA  149 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555566666777777777777777777777777443

Several sequences in this family are described as being myosin heavy chain-like.

>PRK01156 chromosome segregation protein; Provisional

Probab=96.81  E-value=2.4  Score=52.87  Aligned_cols=21  Identities=29%  Similarity=0.536  Sum_probs=19.2

Q ss_pred             EEEEeeCCCCCChhHHHHHHh
Q 004698           72 GVVSVCGRARQGKSFILNQLL   92 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~   92 (736)
                      +|..|+|+.|+|||+|+.+|.
T Consensus        24 gi~~I~G~NGsGKSsileAI~   44 (895)
T PRK01156         24 GINIITGKNGAGKSSIVDAIR   44 (895)
T ss_pred             CeEEEECCCCCCHHHHHHHHH
Confidence            588999999999999999975

>cd01855 YqeH YqeH

Probab=96.80  E-value=0.0015  Score=65.41  Aligned_cols=55  Identities=29%  Similarity=0.332  Sum_probs=36.3

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCCC-------cccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRSS-------GFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI  138 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~~-------gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~  138 (736)
                      .|.++|..++|||+|+|.|++...       +..+++. ..+|++.....-        +.  .+.|+||||+
T Consensus       129 ~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~-~gtT~~~~~~~~--------~~--~~~~~DtPG~  190 (190)
T cd01855         129 DVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPI-PGTTLDLIKIPL--------GN--GKKLYDTPGI  190 (190)
T ss_pred             cEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCC-CCeeeeeEEEec--------CC--CCEEEeCcCC
Confidence            588999999999999999998542       2233222 235666543221        11  3688999996

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>cd01868 Rab11_like Rab11-like

Probab=96.79  E-value=0.002  Score=62.17  Aligned_cols=57  Identities=23%  Similarity=0.409  Sum_probs=39.6

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCC
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI  138 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~  138 (736)
                      |+|+|+.++|||+|+|+|++..  |...+   ..|.|+-.+...+.   .+|..+.+-++||+|.
T Consensus         6 i~vvG~~~~GKSsli~~l~~~~--~~~~~---~~t~~~~~~~~~~~---~~~~~~~~~l~D~~g~   62 (165)
T cd01868           6 IVLIGDSGVGKSNLLSRFTRNE--FNLDS---KSTIGVEFATRSIQ---IDGKTIKAQIWDTAGQ   62 (165)
T ss_pred             EEEECCCCCCHHHHHHHHhcCC--CCCCC---CCccceEEEEEEEE---ECCEEEEEEEEeCCCh
Confidence            7899999999999999999876  54322   23555533333332   1355577889999995

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=96.79  E-value=0.0017  Score=71.78  Aligned_cols=74  Identities=20%  Similarity=0.316  Sum_probs=44.9

Q ss_pred             CCCEEEEEeeCCCCCChhHHHHHHhCC----C--Ccc----------cccCC-CCCccceEEeeccccccccCCCCceEE
Q 004698           68 KEPIGVVSVCGRARQGKSFILNQLLGR----S--SGF----------QVAST-HRPCTKGLWLWSAPLKRTALDGTEYNL  130 (736)
Q Consensus        68 ~~~v~vVsv~G~~rtGKS~LlN~l~~~----~--~gF----------~~~~~-~~~~T~Giw~w~~p~~~~~~~g~~~~v  130 (736)
                      ++.+. |+|+||-|||||+|+|+|.+.    .  +.+          +-++| +=.+|.=..+-.+.......+|-+..|
T Consensus        15 ~G~Iy-IGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~V   93 (492)
T TIGR02836        15 QGDIY-IGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKV   93 (492)
T ss_pred             CCcEE-EEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccE
Confidence            46665 999999999999999999987    2  011          00011 001222233333332233345666789


Q ss_pred             EEeecCCCcccC
Q 004698          131 LLLDSEGIDAYD  142 (736)
Q Consensus       131 ~llDteG~~~~~  142 (736)
                      .|+||-|+++..
T Consensus        94 rlIDcvG~~v~G  105 (492)
T TIGR02836        94 RLVDCVGYTVKG  105 (492)
T ss_pred             EEEECCCcccCC
Confidence            999999997644

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=96.79  E-value=1.7  Score=51.44  Aligned_cols=36  Identities=19%  Similarity=0.181  Sum_probs=19.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698          633 LAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAA  669 (736)
Q Consensus       633 ~~~~~~q~~~~~~E~~e~~~ky~~~~~e~kalle~~~  669 (736)
                      ++.+..|-..+++.+.|+...|-.+-++ |+.+.-+.
T Consensus       155 ~SRAlsQN~eLK~QL~Elq~~Fv~ltne-~~elt~~l  190 (617)
T PF15070_consen  155 ASRALSQNRELKEQLAELQDAFVKLTNE-NMELTSAL  190 (617)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHh-hhHhhHHH
Confidence            3344445556666667777766666653 34443333

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=96.79  E-value=2.3  Score=52.47  Aligned_cols=152  Identities=18%  Similarity=0.228  Sum_probs=91.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhh
Q 004698          546 KRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSR  625 (736)
Q Consensus       546 k~~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~yee~~~~~~~~~~~~~~~i~~L~~k  625 (736)
                      +.+...|..+.+.++....++..++.-.+.+...+..+..+++.|.......++..++.....+...+-+..++..++..
T Consensus       408 K~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~eke  487 (1293)
T KOG0996|consen  408 KRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQETEGIREEIEKLEKE  487 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Confidence            44445555555555555555555555555555555555555555555555555555555555555555566666666666


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhHHHHH
Q 004698          626 STAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKE  698 (736)
Q Consensus       626 ~~~~E~~~~~~~~q~~~~~~E~~e~~~ky~~~~~e~kalle~~~~~~e~~~e~~~~~~~~l~~e~~~~~~e~~  698 (736)
                      +.....++..++.+++-+++|+..+..+.+.+..+- ..+...........++....++.+..++.+.+.|+.
T Consensus       488 l~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~-e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~  559 (1293)
T KOG0996|consen  488 LMPLLKQVNEARSELDVAESELDILLSRHETGLKKV-EELKGKLLASSESLKEKKTELDDLKEELPSLKQELK  559 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence            666666777777888888888877777777776654 222233333334455566667777777777665553

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=96.78  E-value=2.1  Score=51.84  Aligned_cols=45  Identities=13%  Similarity=0.257  Sum_probs=27.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 004698          550 DAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEI  594 (736)
Q Consensus       550 ~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e~  594 (736)
                      ..++.++..+.+...+.+..+.++.++.++...+.+.+..++++.
T Consensus       328 ~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~  372 (1200)
T KOG0964|consen  328 HVLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQ  372 (1200)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHH
Confidence            344444556666666666666666666666666666666666533

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=96.77  E-value=0.0033  Score=69.39  Aligned_cols=97  Identities=21%  Similarity=0.249  Sum_probs=49.0

Q ss_pred             CCCEEEEEeeCCCCCChhHHHHHHhCCC---CcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcccCCC
Q 004698           68 KEPIGVVSVCGRARQGKSFILNQLLGRS---SGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYDQT  144 (736)
Q Consensus        68 ~~~v~vVsv~G~~rtGKS~LlN~l~~~~---~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~~~~  144 (736)
                      +.|+. |+|+|..|+|||+|+|.|.|-.   .|-. ..|+-.+|...-.+..|..   |     .|+|.|.||.|...-.
T Consensus        33 ~~~l~-IaV~G~sGsGKSSfINalrGl~~~d~~aA-~tGv~etT~~~~~Y~~p~~---p-----nv~lWDlPG~gt~~f~  102 (376)
T PF05049_consen   33 NAPLN-IAVTGESGSGKSSFINALRGLGHEDEGAA-PTGVVETTMEPTPYPHPKF---P-----NVTLWDLPGIGTPNFP  102 (376)
T ss_dssp             H--EE-EEEEESTTSSHHHHHHHHTT--TTSTTS---SSSHSCCTS-EEEE-SS----T-----TEEEEEE--GGGSS--
T ss_pred             cCceE-EEEECCCCCCHHHHHHHHhCCCCCCcCcC-CCCCCcCCCCCeeCCCCCC---C-----CCeEEeCCCCCCCCCC
Confidence            35776 9999999999999999998743   2221 1122245666666655431   2     3788899999865432


Q ss_pred             CccchHHHHHhhhccceEEEccCCCCchHHhh
Q 004698          145 GTYSTQIFSLAVLLSSMFIYNQMGGIDESAID  176 (736)
Q Consensus       145 ~~~d~~IFaLa~LLSS~~IyN~~g~i~e~~l~  176 (736)
                      .+  .-+=..-.--=.+||.=+.+.+.++++.
T Consensus       103 ~~--~Yl~~~~~~~yD~fiii~s~rf~~ndv~  132 (376)
T PF05049_consen  103 PE--EYLKEVKFYRYDFFIIISSERFTENDVQ  132 (376)
T ss_dssp             HH--HHHHHTTGGG-SEEEEEESSS--HHHHH
T ss_pred             HH--HHHHHccccccCEEEEEeCCCCchhhHH
Confidence            11  0000101111344565566777777765

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>COG1161 Predicted GTPases [General function prediction only]

Probab=96.77  E-value=0.0028  Score=69.07  Aligned_cols=58  Identities=33%  Similarity=0.485  Sum_probs=41.4

Q ss_pred             EEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceE-EeeccccccccCCCCceEEEEeecCCCcccC
Q 004698           72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGL-WLWSAPLKRTALDGTEYNLLLLDSEGIDAYD  142 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Gi-w~w~~p~~~~~~~g~~~~v~llDteG~~~~~  142 (736)
                      .-|.|+|-+.+|||+|+|.|+|+.. -.+++.. ..|+|+ |+-..           ..+.|+||||+--.+
T Consensus       133 ~~v~vvG~PNVGKSslIN~L~~k~~-~~~s~~P-G~Tk~~q~i~~~-----------~~i~LlDtPGii~~~  191 (322)
T COG1161         133 IRVGVVGYPNVGKSTLINRLLGKKV-AKTSNRP-GTTKGIQWIKLD-----------DGIYLLDTPGIIPPK  191 (322)
T ss_pred             eEEEEEcCCCCcHHHHHHHHhcccc-eeeCCCC-ceecceEEEEcC-----------CCeEEecCCCcCCCC
Confidence            3499999999999999999999864 3333322 457776 55321           238999999986443

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=96.75  E-value=1.1  Score=53.56  Aligned_cols=37  Identities=27%  Similarity=0.401  Sum_probs=26.7

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 004698          560 DDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISD  596 (736)
Q Consensus       560 e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e~~e  596 (736)
                      +=++.+-..|+.++..+.+|...|+-+||-||.|.++
T Consensus       321 EmAEERaesLQ~eve~lkEr~deletdlEILKaEmee  357 (1243)
T KOG0971|consen  321 EMAEERAESLQQEVEALKERVDELETDLEILKAEMEE  357 (1243)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3445555678888888888888888888888865543

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=96.75  E-value=0.0024  Score=61.40  Aligned_cols=58  Identities=21%  Similarity=0.178  Sum_probs=40.4

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      |.|+|+.++|||+|+|+|.+..  |..   ....|.|+-.....+..   +|..+.+-++||+|..
T Consensus         3 i~~vG~~~vGKTsli~~l~~~~--~~~---~~~~t~~~~~~~~~~~~---~~~~~~l~i~Dt~G~~   60 (168)
T cd04119           3 VISMGNSGVGKSCIIKRYCEGR--FVS---KYLPTIGIDYGVKKVSV---RNKEVRVNFFDLSGHP   60 (168)
T ss_pred             EEEECCCCCCHHHHHHHHHhCC--CCC---CCCCccceeEEEEEEEE---CCeEEEEEEEECCccH
Confidence            7899999999999999999876  432   22345555433322221   3566889999999963

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=96.75  E-value=0.0013  Score=60.74  Aligned_cols=57  Identities=28%  Similarity=0.424  Sum_probs=38.9

Q ss_pred             eeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698           76 VCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA  140 (736)
Q Consensus        76 v~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~  140 (736)
                      |+|+.++|||+|+|.|.+....    +.....|. ++.+...+..   .+....+.++||+|...
T Consensus         1 iiG~~~~GKStl~~~l~~~~~~----~~~~~~t~-~~~~~~~~~~---~~~~~~~~l~D~~g~~~   57 (157)
T cd00882           1 VVGDSGVGKTSLLNRLLGGEFV----PEEYETTI-IDFYSKTIEV---DGKKVKLQIWDTAGQER   57 (157)
T ss_pred             CCCcCCCcHHHHHHHHHhCCcC----Ccccccch-hheeeEEEEE---CCEEEEEEEEecCChHH
Confidence            6899999999999999987632    22223343 6666554432   13346799999999753

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=96.75  E-value=0.0021  Score=62.11  Aligned_cols=60  Identities=18%  Similarity=0.295  Sum_probs=38.5

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      +|+|+|..++|||+|+|.|.+..  |... ....+|..+.....+..    .+....+.++||+|..
T Consensus         2 ~i~iiG~~~~GKtsli~~l~~~~--~~~~-~~~~~t~~~~~~~~~~~----~~~~~~~~iiDtpG~~   61 (168)
T cd01887           2 VVTVMGHVDHGKTTLLDKIRKTN--VAAG-EAGGITQHIGAFEVPAE----VLKIPGITFIDTPGHE   61 (168)
T ss_pred             EEEEEecCCCCHHHHHHHHHhcc--cccc-cCCCeEEeeccEEEecc----cCCcceEEEEeCCCcH
Confidence            59999999999999999999764  4332 11234444433222211    0234678899999964

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription

Probab=96.74  E-value=0.66  Score=47.72  Aligned_cols=105  Identities=17%  Similarity=0.259  Sum_probs=53.8

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------HHHHHHHHHHHHHhhhhHHHH
Q 004698          559 ADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQK--------AMEDQVCSEIEVLKSRSTAAE  630 (736)
Q Consensus       559 ~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~yee~~~~~~--------~~~~~~~~~i~~L~~k~~~~E  630 (736)
                      +.+++..+..++..+..+......+..+++....++..|..+.+..+...+        .....+..++..|+..+..++
T Consensus        32 ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~~~~~l~~~~~~~~  111 (221)
T PF04012_consen   32 IRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKADLEEQAERLEQQLDQAE  111 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333444444444445555556666666666666666666644443332        222344444444555444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698          631 ARLAAAREQALSAQEEVEEWKRKYGVAVREAKA  663 (736)
Q Consensus       631 ~~~~~~~~q~~~~~~E~~e~~~ky~~~~~e~ka  663 (736)
                      ..+..+..++..++..+.+++++.+.+..+.++
T Consensus       112 ~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~  144 (221)
T PF04012_consen  112 AQVEKLKEQLEELEAKLEELKSKREELKARENA  144 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455555555555555555555555555554433

The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=96.73  E-value=0.0086  Score=54.56  Aligned_cols=90  Identities=21%  Similarity=0.300  Sum_probs=49.8

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCc-ccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcccCCCCccchHHH
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSG-FQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYDQTGTYSTQIF  152 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~g-F~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~~~~~~~d~~IF  152 (736)
                      |.|+|+.++|||+|++.|++.... -.......+.|.++......       +....+.+.|+.|.....     ..+-+
T Consensus         2 I~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~d~~g~~~~~-----~~~~~   69 (119)
T PF08477_consen    2 IVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVD-------GDRQSLQFWDFGGQEEFY-----SQHQF   69 (119)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEET-------TEEEEEEEEEESSSHCHH-----CTSHH
T ss_pred             EEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEec-------CCceEEEEEecCccceec-----ccccc
Confidence            679999999999999999987622 11233334445554433322       233458889999863211     11111


Q ss_pred             HHhhhccceEEEccCCCCchHHhhhh
Q 004698          153 SLAVLLSSMFIYNQMGGIDESAIDRL  178 (736)
Q Consensus       153 aLa~LLSS~~IyN~~g~i~e~~l~~L  178 (736)
                      .+.--=.=++||++.   +...++++
T Consensus        70 ~~~~~d~~ilv~D~s---~~~s~~~~   92 (119)
T PF08477_consen   70 FLKKADAVILVYDLS---DPESLEYL   92 (119)
T ss_dssp             HHHHSCEEEEEEECC---GHHHHHHH
T ss_pred             hhhcCcEEEEEEcCC---ChHHHHHH
Confidence            233333345677654   34555554

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>COG1084 Predicted GTPase [General function prediction only]

Probab=96.73  E-value=0.0045  Score=66.19  Aligned_cols=103  Identities=17%  Similarity=0.200  Sum_probs=66.2

Q ss_pred             ceeeCHHHHHHhhcc---CCCEEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceE
Q 004698           53 KFRMDPEAVAALQLV---KEPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYN  129 (736)
Q Consensus        53 ~l~l~~eAl~~L~~i---~~~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~  129 (736)
                      .|..-.+|.+.|..+   +-..--|-|+|.+..|||+|++.|-+..  -.+.+= -=+||||.+-.--.     ++  ..
T Consensus       147 ~L~fL~~~r~~l~~LP~Idp~~pTivVaG~PNVGKSSlv~~lT~Ak--pEvA~Y-PFTTK~i~vGhfe~-----~~--~R  216 (346)
T COG1084         147 DLEFLRKARDHLKKLPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAK--PEVAPY-PFTTKGIHVGHFER-----GY--LR  216 (346)
T ss_pred             HHHHHHHHHHHHhcCCCCCCCCCeEEEecCCCCcHHHHHHHHhcCC--CccCCC-CccccceeEeeeec-----CC--ce
Confidence            344445666666653   4345567889999999999999999875  222211 12589999875321     12  35


Q ss_pred             EEEeecCCCcccCCCCcc---chHHHHHhhhccceEEEcc
Q 004698          130 LLLLDSEGIDAYDQTGTY---STQIFSLAVLLSSMFIYNQ  166 (736)
Q Consensus       130 v~llDteG~~~~~~~~~~---d~~IFaLa~LLSS~~IyN~  166 (736)
                      +=++||||+-+..-+.-+   ...|.||.- |-++++|=.
T Consensus       217 ~QvIDTPGlLDRPl~ErN~IE~qAi~AL~h-l~~~IlF~~  255 (346)
T COG1084         217 IQVIDTPGLLDRPLEERNEIERQAILALRH-LAGVILFLF  255 (346)
T ss_pred             EEEecCCcccCCChHHhcHHHHHHHHHHHH-hcCeEEEEE
Confidence            777899999544333333   456888854 677777743

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=96.73  E-value=0.43  Score=55.20  Aligned_cols=81  Identities=17%  Similarity=0.363  Sum_probs=40.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH--------
Q 004698          521 RSIEDNMKLLKKQLEDSERYKSEYLKR-----------YDDAINDKKKLADDYTSRINNLQGENISLREKSS--------  581 (736)
Q Consensus       521 es~e~e~~~lk~~Le~~e~~~~e~~k~-----------~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~--------  581 (736)
                      +-++.++..++..+++++..+.+|+++           +...+.++...+..++.+...++...+.+...+.        
T Consensus       164 ~fl~~ql~~~~~~L~~ae~~l~~f~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l~~~~~~~~~  243 (498)
T TIGR03007       164 RFIDEQIKTYEKKLEAAENRLKAFKQENGGILPDQEGDYYSEISEAQEELEAARLELNEAIAQRDALKRQLGGEEPVLLA  243 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCc
Confidence            334444455555555555555555432           2334444444444555555555554444444322        


Q ss_pred             -------HHHHHHHHHHHHHHHHHHHH
Q 004698          582 -------SLSKTVDSLKNEISDWKRKY  601 (736)
Q Consensus       582 -------~L~~~le~lk~e~~e~~~~y  601 (736)
                             .+..++..++.+..++...|
T Consensus       244 ~~~~~~~~l~~~l~~l~~~l~~l~~~y  270 (498)
T TIGR03007       244 GSSVANSELDGRIEALEKQLDALRLRY  270 (498)
T ss_pred             ccccCCCchHHHHHHHHHHHHHHHHHh
Confidence                   34445555555566666555

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=96.72  E-value=0.0038  Score=66.98  Aligned_cols=61  Identities=28%  Similarity=0.317  Sum_probs=41.2

Q ss_pred             CEEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcccC
Q 004698           70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYD  142 (736)
Q Consensus        70 ~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~~  142 (736)
                      +...|.|+|.+++|||+|+|.|.|... ..+++. -.+|+++ -|..   .    +  ..+.|+||||+..+.
T Consensus       120 ~~~~~~~~G~pnvGKSsliN~l~~~~~-~~~~~~-~g~T~~~-~~~~---~----~--~~~~l~DtPGi~~~~  180 (287)
T PRK09563        120 RAIRAMIIGIPNVGKSTLINRLAGKKI-AKTGNR-PGVTKAQ-QWIK---L----G--KGLELLDTPGILWPK  180 (287)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCc-cccCCC-CCeEEEE-EEEE---e----C--CcEEEEECCCcCCCC
Confidence            345699999999999999999998752 344332 2356664 2321   1    1  137899999996443

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=96.70  E-value=0.61  Score=56.90  Aligned_cols=24  Identities=17%  Similarity=0.241  Sum_probs=16.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 004698          578 EKSSSLSKTVDSLKNEISDWKRKY  601 (736)
Q Consensus       578 ~r~~~L~~~le~lk~e~~e~~~~y  601 (736)
                      ..++.|..++..++.+..++...|
T Consensus       288 ~~i~~L~~~l~~l~~~~~~l~~~y  311 (754)
T TIGR01005       288 DLIQRLRERQAELRATIADLSTTM  311 (754)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhh
Confidence            456666777777777777777777

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>cd01864 Rab19 Rab19 subfamily

Probab=96.70  E-value=0.0027  Score=61.51  Aligned_cols=58  Identities=19%  Similarity=0.352  Sum_probs=37.8

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI  138 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~  138 (736)
                      =|+|+|+.++|||+|+|+|.+..  |.-   ....|.|+-.-...+   ..+|..+.+.++||+|.
T Consensus         5 kv~vvG~~~~GKTsli~~l~~~~--~~~---~~~~t~~~~~~~~~~---~~~~~~~~l~i~D~~G~   62 (165)
T cd01864           5 KIILIGDSNVGKTCVVQRFKSGT--FSE---RQGNTIGVDFTMKTL---EIEGKRVKLQIWDTAGQ   62 (165)
T ss_pred             EEEEECCCCCCHHHHHHHHhhCC--Ccc---cCCCccceEEEEEEE---EECCEEEEEEEEECCCh
Confidence            37899999999999999998654  422   123355543221111   12345578899999994

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=96.69  E-value=0.0016  Score=64.28  Aligned_cols=38  Identities=26%  Similarity=0.505  Sum_probs=29.6

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccc
Q 004698           73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLK  119 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~  119 (736)
                      +|+|+||.++|||||||.+.|    |..     |..-.||+-.+-+.
T Consensus        27 ~vAi~GpSGaGKSTLLnLIAG----F~~-----P~~G~i~i~g~d~t   64 (231)
T COG3840          27 IVAILGPSGAGKSTLLNLIAG----FET-----PASGEILINGVDHT   64 (231)
T ss_pred             EEEEECCCCccHHHHHHHHHh----ccC-----CCCceEEEcCeecC
Confidence            699999999999999999986    433     44567888765443

>PF13870 DUF4201: Domain of unknown function (DUF4201)

Probab=96.69  E-value=0.47  Score=47.14  Aligned_cols=152  Identities=15%  Similarity=0.188  Sum_probs=85.1

Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 004698          510 GSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYL----KRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSK  585 (736)
Q Consensus       510 ~~e~~~L~~k~es~e~e~~~lk~~Le~~e~~~~e~~----k~~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~  585 (736)
                      ..+++.++.+.-.+...+..+..++..-+..-....    ..++.+...+...++.=..+...|...+.+.-.-+...+.
T Consensus         5 ~~~i~~~Rl~~~~lk~~l~k~~~ql~~ke~lge~L~~iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~ke   84 (177)
T PF13870_consen    5 RNEISKLRLKNITLKHQLAKLEEQLRQKEELGEGLHLIDFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKE   84 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456778888888888888888888877555322211    1233444444555555555555555555555555555555


Q ss_pred             HHHHHHHHHHHHHHHH---HHHHHHhhHHHHHHHHHHHHHhhhhHHHHHH------------HHHHHHHHHHHHHHHHHH
Q 004698          586 TVDSLKNEISDWKRKY---DQVLTKQKAMEDQVCSEIEVLKSRSTAAEAR------------LAAAREQALSAQEEVEEW  650 (736)
Q Consensus       586 ~le~lk~e~~e~~~~y---ee~~~~~~~~~~~~~~~i~~L~~k~~~~E~~------------~~~~~~q~~~~~~E~~e~  650 (736)
                      .+..+..+...++...   ++.+...+.....++.+.+.++.....+...            ...........+.++..|
T Consensus        85 Kl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~~~P~ll~Dy~~~~~~~~~l~~~i~~l  164 (177)
T PF13870_consen   85 KLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQGGLLGVPALLRDYDKTKEEVEELRKEIKEL  164 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555555555544   2333333333333333333333333333222            334455566678888888


Q ss_pred             HHHHHHHHHHH
Q 004698          651 KRKYGVAVREA  661 (736)
Q Consensus       651 ~~ky~~~~~e~  661 (736)
                      ++++..+..+.
T Consensus       165 ~rk~~~l~~~i  175 (177)
T PF13870_consen  165 ERKVEILEMRI  175 (177)
T ss_pred             HHHHHHHHHhh
Confidence            88888877654

>PRK11058 GTPase HflX; Provisional

Probab=96.68  E-value=0.0056  Score=69.31  Aligned_cols=55  Identities=22%  Similarity=0.271  Sum_probs=38.2

Q ss_pred             EEEEEeeCCCCCChhHHHHHHhCCCCcccc----cCCCCCccceEEeeccccccccCCCCceEEEEeecCCC
Q 004698           71 IGVVSVCGRARQGKSFILNQLLGRSSGFQV----ASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI  138 (736)
Q Consensus        71 v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~----~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~  138 (736)
                      +..|+|+|.+++|||+|+|.|.|..  +.+    +.|..+.+..+-+|.         +  ..++|+||.|+
T Consensus       197 ~p~ValVG~~NaGKSSLlN~Lt~~~--~~v~~~~~tTld~~~~~i~l~~---------~--~~~~l~DTaG~  255 (426)
T PRK11058        197 VPTVSLVGYTNAGKSTLFNRITEAR--VYAADQLFATLDPTLRRIDVAD---------V--GETVLADTVGF  255 (426)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCc--eeeccCCCCCcCCceEEEEeCC---------C--CeEEEEecCcc
Confidence            3468999999999999999999864  222    345555444443332         1  14678999998

>TIGR03017 EpsF chain length determinant protein EpsF

Probab=96.67  E-value=0.73  Score=52.44  Aligned_cols=111  Identities=13%  Similarity=0.200  Sum_probs=51.3

Q ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhHH
Q 004698          616 CSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLA  695 (736)
Q Consensus       616 ~~~i~~L~~k~~~~E~~~~~~~~q~~~~~~E~~e~~~ky~~~~~e~kalle~~~~~~e~~~e~~~~~~~~l~~e~~~~~~  695 (736)
                      .+++.+++.++..+-.+..+-+-....++.++.++++..+..+.+....++.............++.++.++.++..+ .
T Consensus       260 ~~~l~~le~~l~~l~~~y~~~hP~v~~l~~~i~~l~~~l~~e~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l-~  338 (444)
T TIGR03017       260 KTDIARAESKLAELSQRLGPNHPQYKRAQAEINSLKSQLNAEIKKVTSSVGTNSRILKQREAELREALENQKAKVLEL-N  338 (444)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence            333333333333333343444444555555555555544433333222222222222233333333333333333322 2


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHhhhhhh
Q 004698          696 EKEEEMKEKATKIEHAEQCLTTLRLELKVSFF  727 (736)
Q Consensus       696 e~~~~~~~~~~k~~~~~~~~~~~~~~l~~~~~  727 (736)
                      ....++..++..++-++...+.+...+++...
T Consensus       339 ~~~~~~~~L~r~~~~~~~~y~~ll~r~~e~~l  370 (444)
T TIGR03017       339 RQRDEMSVLQRDVENAQRAYDAAMQRYTQTRI  370 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22345677777777777777777777766543

Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.

>cd01866 Rab2 Rab2 subfamily

Probab=96.67  E-value=0.0029  Score=61.64  Aligned_cols=60  Identities=25%  Similarity=0.340  Sum_probs=39.4

Q ss_pred             EEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCC
Q 004698           71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI  138 (736)
Q Consensus        71 v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~  138 (736)
                      +.=|.|+|+.++|||+|+|++.+..  |....   +.|.|+-.+...+.   .+|..+.+.++||+|.
T Consensus         4 ~~ki~vvG~~~vGKSsLl~~l~~~~--~~~~~---~~t~~~~~~~~~~~---~~~~~~~~~i~Dt~G~   63 (168)
T cd01866           4 LFKYIIIGDTGVGKSCLLLQFTDKR--FQPVH---DLTIGVEFGARMIT---IDGKQIKLQIWDTAGQ   63 (168)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCC--CCCCC---CCccceeEEEEEEE---ECCEEEEEEEEECCCc
Confidence            3458999999999999999999765  43322   22444322211111   2355678899999994

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=96.66  E-value=2.5  Score=51.17  Aligned_cols=160  Identities=18%  Similarity=0.200  Sum_probs=93.8

Q ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHH-HHhhhhHHHHHHHHHHHHHHHHHH
Q 004698          569 LQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQ---KAMEDQVCSEIE-VLKSRSTAAEARLAAAREQALSAQ  644 (736)
Q Consensus       569 Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~yee~~~~~---~~~~~~~~~~i~-~L~~k~~~~E~~~~~~~~q~~~~~  644 (736)
                      .+-+...+...+..|...+..+..++..++..+...+.+.   .-.+.+++.+|+ .-+++ ......+....+.....+
T Consensus       263 ~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~r-~~~l~~l~~~~~ki~e~~  341 (1200)
T KOG0964|consen  263 VEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQITGNEQQR-NLALHVLQKVKDKIEEKK  341 (1200)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhh-hhHHHHHHHHHHHHHHHH
Confidence            3444455555555555566666666666666664443333   223446777777 33333 333444677888888889


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HhhHHHHHHHHHHHHHHHhhHHHHHH---HHHHHHHHHH
Q 004698          645 EEVEEWKRKYGVAVREAKAALEKAAIVQE------------RTSKEMQQREDVLREEFSSTLAEKEE---EMKEKATKIE  709 (736)
Q Consensus       645 ~E~~e~~~ky~~~~~e~kalle~~~~~~e------------~~~e~~~~~~~~l~~e~~~~~~e~~~---~~~~~~~k~~  709 (736)
                      .|+++.+-||+.++.+++.+-.+.+....            ..-..+..|..=+|.+...++.-++.   ....+|..|+
T Consensus       342 ~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk~eRDkwir~ei~~l~~~i~~~ke~e~~lq~e~~  421 (1200)
T KOG0964|consen  342 DELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSKEERDKWIRSEIEKLKRGINDTKEQENILQKEIE  421 (1200)
T ss_pred             HHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence            99999999999999888766666553222            12223345555566665555444332   2555666666


Q ss_pred             HHHHHHhhHHHHhhhhhhhc
Q 004698          710 HAEQCLTTLRLELKVSFFDI  729 (736)
Q Consensus       710 ~~~~~~~~~~~~l~~~~~~~  729 (736)
                      .++..++.++.++++=.-+|
T Consensus       422 ~~e~~l~~~~e~i~~l~~si  441 (1200)
T KOG0964|consen  422 DLESELKEKLEEIKELESSI  441 (1200)
T ss_pred             HHHHHHHHHHHHHHHHHhhH
Confidence            66666666666665544444

>cd00154 Rab Rab family

Probab=96.65  E-value=0.0031  Score=59.44  Aligned_cols=57  Identities=23%  Similarity=0.352  Sum_probs=37.4

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCC
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI  138 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~  138 (736)
                      |.++|+.++|||+|+|.|++..  |...   ...|.|+-.-..-+..   ++..+.+.++||+|.
T Consensus         3 i~~~G~~~~GKStl~~~l~~~~--~~~~---~~~t~~~~~~~~~~~~---~~~~~~~~l~D~~g~   59 (159)
T cd00154           3 IVLIGDSGVGKTSLLLRFVDGK--FDEN---YKSTIGVDFKSKTIEI---DGKTVKLQIWDTAGQ   59 (159)
T ss_pred             EEEECCCCCCHHHHHHHHHhCc--CCCc---cCCceeeeeEEEEEEE---CCEEEEEEEEecCCh
Confidence            7889999999999999999775  3322   1234444322221111   234578899999995

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=96.62  E-value=1.2  Score=52.65  Aligned_cols=25  Identities=12%  Similarity=0.331  Sum_probs=14.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698          581 SSLSKTVDSLKNEISDWKRKYDQVL  605 (736)
Q Consensus       581 ~~L~~~le~lk~e~~e~~~~yee~~  605 (736)
                      ..|...++.|++++..|..+++...
T Consensus        83 ~~Lq~E~~~L~kElE~L~~qlqaqv  107 (617)
T PF15070_consen   83 QQLQAEAEHLRKELESLEEQLQAQV  107 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3555566666666666666665433

>cd04113 Rab4 Rab4 subfamily

Probab=96.62  E-value=0.0033  Score=60.41  Aligned_cols=58  Identities=22%  Similarity=0.401  Sum_probs=38.9

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      |.|+|+.++|||+|+|+|++..  |...   .+.|.|+-.-..++.   .+|..+.+.++||+|..
T Consensus         3 i~v~G~~~vGKTsli~~l~~~~--~~~~---~~~~~~~~~~~~~~~---~~~~~~~l~l~D~~G~~   60 (161)
T cd04113           3 FIIIGSSGTGKSCLLHRFVENK--FKED---SQHTIGVEFGSKIIR---VGGKRVKLQIWDTAGQE   60 (161)
T ss_pred             EEEECCCCCCHHHHHHHHHhCC--CCCC---CCCceeeeEEEEEEE---ECCEEEEEEEEECcchH
Confidence            6899999999999999999765  4332   233444433222221   13556788999999953

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure

Probab=96.62  E-value=2.1  Score=49.81  Aligned_cols=162  Identities=15%  Similarity=0.140  Sum_probs=81.8

Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-H-HHhhhhHHHHHHHHHHHHH
Q 004698          562 YTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEI-E-VLKSRSTAAEARLAAAREQ  639 (736)
Q Consensus       562 ~e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~yee~~~~~~~~~~~~~~~i-~-~L~~k~~~~E~~~~~~~~q  639 (736)
                      +...+.....+...+...+..+...++..+.+..+++.++..++...-+..+.++... . .+......  ..+..+..+
T Consensus       205 A~~~~~~~l~~~~e~~~~l~l~~~~~~~~~~el~~Yk~kA~~iLq~kEklI~~LK~~~~~~~~~~~~~~--~el~~l~~E  282 (511)
T PF09787_consen  205 ALRHYIEYLRESGELQEQLELLKAEGESEEAELQQYKQKAQRILQSKEKLIESLKEGCLEEGFDSSTNS--IELEELKQE  282 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccccccccch--hcchhhHHH
Confidence            4445566667777777888888888888888888888776665555544444444300 0 00000000  112334444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 004698          640 ALSAQEEVEEWKRKYGVAVREAKAALEKAA--------------IVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKA  705 (736)
Q Consensus       640 ~~~~~~E~~e~~~ky~~~~~e~kalle~~~--------------~~~e~~~e~~~~~~~~l~~e~~~~~~e~~~~~~~~~  705 (736)
                      .++.++|+..+++..+++..+....-.+..              ..+...... +.++..+..++....++........+
T Consensus       283 ~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~~~~~~~~~~~~~~~~~~~~~~~~~-e~e~~l~~~el~~~~ee~~~~~s~~~  361 (511)
T PF09787_consen  283 RDHLQEEIQLLERQIEQLRAELQDLEAQLEGEQESFREQPQELSQQLEPELTT-EAELRLYYQELYHYREELSRQKSPLQ  361 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhch-HHHHHHHHHHHHHHHHHHHHhcChHH
Confidence            444444444444444444443322222222              111111111 44444555555555555555555556


Q ss_pred             HHHHHHHHHHhhHHHHhhhhh
Q 004698          706 TKIEHAEQCLTTLRLELKVSF  726 (736)
Q Consensus       706 ~k~~~~~~~~~~~~~~l~~~~  726 (736)
                      .|+..-+.++.-+...+..+.
T Consensus       362 ~k~~~ke~E~q~lr~~l~~~~  382 (511)
T PF09787_consen  362 LKLKEKESEIQKLRNQLSARA  382 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh
Confidence            666665666666655555543

They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].

>cd01895 EngA2 EngA2 subfamily

Probab=96.60  E-value=0.0034  Score=60.36  Aligned_cols=59  Identities=31%  Similarity=0.468  Sum_probs=35.1

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698           73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA  140 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~  140 (736)
                      -|.++|..++|||+|+|.|++..  +........+|.....  ..+.   .+|  ..+.++||+|++.
T Consensus         4 ~i~i~G~~~~GKstli~~l~~~~--~~~~~~~~~~~~~~~~--~~~~---~~~--~~~~iiDtpG~~~   62 (174)
T cd01895           4 RIAIIGRPNVGKSSLVNALLGEE--RVIVSDIAGTTRDSID--VPFE---YDG--KKYTLIDTAGIRR   62 (174)
T ss_pred             EEEEEcCCCCCHHHHHHHHhCcc--ceeccCCCCCccCcee--eEEE---ECC--eeEEEEECCCCcc
Confidence            38999999999999999999874  2111111122221111  1111   123  3477899999864

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=96.60  E-value=0.0039  Score=60.57  Aligned_cols=52  Identities=25%  Similarity=0.229  Sum_probs=33.6

Q ss_pred             eeCCCCCChhHHHHHHhCCCCcccccCC---CCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           76 VCGRARQGKSFILNQLLGRSSGFQVAST---HRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        76 v~G~~rtGKS~LlN~l~~~~~gF~~~~~---~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      |+|+.++|||+|+|.|.|..  +.+++.   +..++.|...|.        +  ...+.++||+|+.
T Consensus         1 iiG~~~~GKStll~~l~~~~--~~~~~~~~~t~~~~~~~~~~~--------~--~~~~~i~DtpG~~   55 (176)
T cd01881           1 LVGLPNVGKSTLLNALTNAK--PKVANYPFTTLEPNLGVVEVP--------D--GARIQVADIPGLI   55 (176)
T ss_pred             CCCCCCCcHHHHHHHHhcCC--ccccCCCceeecCcceEEEcC--------C--CCeEEEEeccccc
Confidence            68999999999999999875  222221   112233332221        1  2568999999984

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>cd00881 GTP_translation_factor GTP translation factor family

Probab=96.59  E-value=0.0069  Score=59.45  Aligned_cols=22  Identities=27%  Similarity=0.487  Sum_probs=20.3

Q ss_pred             EEeeCCCCCChhHHHHHHhCCC
Q 004698           74 VSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      |+|+|..++|||+|+|.|++..
T Consensus         2 v~v~G~~~~GKStlln~l~~~~   23 (189)
T cd00881           2 VGIAGHVDHGKTTLTERLLYVT   23 (189)
T ss_pred             EEEEeCCCCCHHHHHHHHHHhc
Confidence            7899999999999999999765

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=96.58  E-value=0.0036  Score=60.13  Aligned_cols=58  Identities=24%  Similarity=0.302  Sum_probs=37.0

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      =|+|+|+.++|||+|+|++++..  |..  ...+.+.........     -+|..+.+.++||+|..
T Consensus         4 ki~i~G~~~~GKtsl~~~~~~~~--~~~--~~~~t~~~~~~~~~~-----~~~~~~~~~i~Dt~G~~   61 (164)
T cd04145           4 KLVVVGGGGVGKSALTIQFIQSY--FVT--DYDPTIEDSYTKQCE-----IDGQWAILDILDTAGQE   61 (164)
T ss_pred             EEEEECCCCCcHHHHHHHHHhCC--CCc--ccCCCccceEEEEEE-----ECCEEEEEEEEECCCCc
Confidence            37899999999999999999764  421  112222222221111     13555778899999954

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=96.58  E-value=0.5  Score=53.00  Aligned_cols=55  Identities=11%  Similarity=0.259  Sum_probs=26.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698          548 YDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYD  602 (736)
Q Consensus       548 ~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~ye  602 (736)
                      +......++..+..+..++..++.++..++.++..++.++...+.+....+..++
T Consensus       135 ~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l~~~~~~~~~~~~L~~  189 (423)
T TIGR01843       135 FESRKSTLRAQLELILAQIKQLEAELAGLQAQLQALRQQLEVISEELEARRKLKE  189 (423)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333334444444444555555555555555555555555555555444444443

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>cd01860 Rab5_related Rab5-related subfamily

Probab=96.58  E-value=0.0037  Score=60.03  Aligned_cols=55  Identities=22%  Similarity=0.353  Sum_probs=37.4

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccce--EEeeccccccccCCCCceEEEEeecCCC
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKG--LWLWSAPLKRTALDGTEYNLLLLDSEGI  138 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~G--iw~w~~p~~~~~~~g~~~~v~llDteG~  138 (736)
                      |.|+|+.++|||+|+|+|++..  |..   ....|.|  ...+..++     ++..+.+.++||+|.
T Consensus         4 i~v~G~~~~GKSsli~~l~~~~--~~~---~~~~t~~~~~~~~~v~~-----~~~~~~~~i~D~~G~   60 (163)
T cd01860           4 LVLLGDSSVGKSSLVLRFVKNE--FSE---NQESTIGAAFLTQTVNL-----DDTTVKFEIWDTAGQ   60 (163)
T ss_pred             EEEECCCCCCHHHHHHHHHcCC--CCC---CCCCccceeEEEEEEEE-----CCEEEEEEEEeCCch
Confidence            7899999999999999999876  432   1123444  22222222     345678899999994

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>PRK10698 phage shock protein PspA; Provisional

Probab=96.58  E-value=1.1  Score=46.28  Aligned_cols=147  Identities=15%  Similarity=0.229  Sum_probs=85.9

Q ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-------HHHHHHHHHHHHHHHhh
Q 004698          503 KRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDK-KK-------LADDYTSRINNLQGENI  574 (736)
Q Consensus       503 ~~l~~~i~~e~~~L~~k~es~e~e~~~lk~~Le~~e~~~~e~~k~~e~~In~l-kk-------~~e~~e~~~~~Le~k~~  574 (736)
                      ...+..++..+..++..+..+-+....++.+++..+....+|.++.+..+..= ..       .-..+..+...|+..+.
T Consensus        30 ~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K~~~~~~~~~l~~~~~  109 (222)
T PRK10698         30 RLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEKQKLTDLIATLEHEVT  109 (222)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444445556666666777777777778888888888888876666555421 11       22335556667777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698          575 SLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKY  654 (736)
Q Consensus       575 sl~~r~~~L~~~le~lk~e~~e~~~~yee~~~~~~~~~~~~~~~i~~L~~k~~~~E~~~~~~~~q~~~~~~E~~e~~~ky  654 (736)
                      ........|..++..++.++.+++.+....+...+..  ..+.++...-+.            -...++-+.+..+++|.
T Consensus       110 ~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A--~a~~~~~~~~~~------------~~~~~a~~~f~rmE~ki  175 (222)
T PRK10698        110 LVDETLARMKKEIGELENKLSETRARQQALMLRHQAA--SSSRDVRRQLDS------------GKLDEAMARFESFERRI  175 (222)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhC------------CCcchHHHHHHHHHHHH
Confidence            7777777777777777777777776666555444322  222333311111            11234445566666666


Q ss_pred             HHHHHHHHH
Q 004698          655 GVAVREAKA  663 (736)
Q Consensus       655 ~~~~~e~ka  663 (736)
                      +..+.++.+
T Consensus       176 ~~~Ea~aea  184 (222)
T PRK10698        176 DQMEAEAES  184 (222)
T ss_pred             HHHHHHHhH
Confidence            666666644

>PRK00098 GTPase RsgA; Reviewed

Probab=96.57  E-value=0.0026  Score=68.69  Aligned_cols=23  Identities=35%  Similarity=0.442  Sum_probs=20.9

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      ++.++|+.++|||+|+|.|+|..
T Consensus       166 ~~~~~G~sgvGKStlin~l~~~~  188 (298)
T PRK00098        166 VTVLAGQSGVGKSTLLNALAPDL  188 (298)
T ss_pred             eEEEECCCCCCHHHHHHHHhCCc
Confidence            57799999999999999999864

>cd01865 Rab3 Rab3 subfamily

Probab=96.56  E-value=0.0037  Score=60.62  Aligned_cols=58  Identities=19%  Similarity=0.238  Sum_probs=40.3

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      |.|+|+.++|||+|+|+|.+..  |.-   .-..|.|+-....-+   .+++..+.+.++||+|..
T Consensus         4 i~i~G~~~~GKSsli~~l~~~~--~~~---~~~~t~~~~~~~~~~---~~~~~~~~~~l~Dt~g~~   61 (165)
T cd01865           4 LLIIGNSSVGKTSFLFRYADDS--FTS---AFVSTVGIDFKVKTV---FRNDKRVKLQIWDTAGQE   61 (165)
T ss_pred             EEEECCCCCCHHHHHHHHhcCC--CCC---CCCCceeeEEEEEEE---EECCEEEEEEEEECCChH
Confidence            7899999999999999999865  532   112366654333222   134556889999999953

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=96.56  E-value=2.8  Score=50.39  Aligned_cols=22  Identities=18%  Similarity=0.357  Sum_probs=19.0

Q ss_pred             EEEEEeeCCCCCChhHHHHHHh
Q 004698           71 IGVVSVCGRARQGKSFILNQLL   92 (736)
Q Consensus        71 v~vVsv~G~~rtGKS~LlN~l~   92 (736)
                      -.|+.|.|+.++|||+||+.+.
T Consensus        28 ~~~~~i~G~Ng~GKttll~ai~   49 (650)
T TIGR03185        28 KPIILIGGLNGAGKTTLLDAIQ   49 (650)
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            3477899999999999999964

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>cd04118 Rab24 Rab24 subfamily

Probab=96.56  E-value=0.0036  Score=62.39  Aligned_cols=59  Identities=19%  Similarity=0.276  Sum_probs=41.7

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      |.|+|..++|||+|+|+|++..  |..++.  ..|.|.-++...+.   .+|..+.+-++||.|..
T Consensus         3 i~vvG~~~vGKSsLi~~~~~~~--~~~~~~--~~t~~~~~~~~~~~---~~~~~~~l~i~D~~G~~   61 (193)
T cd04118           3 VVMLGKESVGKTSLVERYVHHR--FLVGPY--QNTIGAAFVAKRMV---VGERVVTLGIWDTAGSE   61 (193)
T ss_pred             EEEECCCCCCHHHHHHHHHhCC--cCCcCc--ccceeeEEEEEEEE---ECCEEEEEEEEECCCch
Confidence            7899999999999999999765  654332  34555544443332   24566778899999964

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd04122 Rab14 Rab14 subfamily

Probab=96.55  E-value=0.0039  Score=60.51  Aligned_cols=57  Identities=25%  Similarity=0.408  Sum_probs=39.2

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCC
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI  138 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~  138 (736)
                      |.|+|+.++|||+|+|++.+..  |.-   ..+.|.|.-+....+.   .+|..+.+.+.||+|.
T Consensus         5 i~iiG~~~vGKTsli~~~~~~~--~~~---~~~~t~~~~~~~~~~~---~~~~~~~l~i~Dt~G~   61 (166)
T cd04122           5 YIIIGDMGVGKSCLLHQFTEKK--FMA---DCPHTIGVEFGTRIIE---VNGQKIKLQIWDTAGQ   61 (166)
T ss_pred             EEEECCCCCCHHHHHHHHhcCC--CCC---CCCcccceeEEEEEEE---ECCEEEEEEEEECCCc
Confidence            6789999999999999999765  532   2234555443322221   2456688999999995

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>smart00175 RAB Rab subfamily of small GTPases

Probab=96.53  E-value=0.0044  Score=59.43  Aligned_cols=57  Identities=23%  Similarity=0.368  Sum_probs=36.8

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCC
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI  138 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~  138 (736)
                      |+|+|+.++|||+|+|+|++..  |....   ..|.|+-....-+   ..+|..+.+-++||+|.
T Consensus         3 v~v~G~~~~GKTtli~~l~~~~--~~~~~---~~~~~~~~~~~~~---~~~~~~~~~~l~D~~G~   59 (164)
T smart00175        3 IILIGDSGVGKSSLLSRFTDGK--FSEQY---KSTIGVDFKTKTI---EVDGKRVKLQIWDTAGQ   59 (164)
T ss_pred             EEEECCCCCCHHHHHHHHhcCC--CCCCC---CCceeeEEEEEEE---EECCEEEEEEEEECCCh
Confidence            7899999999999999999876  43222   1233321111111   12355578889999995

Rab GTPases are implicated in vesicle trafficking.

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=96.52  E-value=1.7  Score=47.46  Aligned_cols=55  Identities=7%  Similarity=0.184  Sum_probs=37.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698          550 DAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQV  604 (736)
Q Consensus       550 ~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~yee~  604 (736)
                      .++.....+-+.++.+...+...+.++...+..+.++...++.++..+-..|.+.
T Consensus       109 ~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql  163 (499)
T COG4372         109 SELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQL  163 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444445555677777777777777777777777777777777766666666433

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=96.52  E-value=0.18  Score=53.84  Aligned_cols=129  Identities=19%  Similarity=0.253  Sum_probs=61.3

Q ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 004698          515 SLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEI  594 (736)
Q Consensus       515 ~L~~k~es~e~e~~~lk~~Le~~e~~~~e~~k~~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e~  594 (736)
                      .|+.|+..++++...++.........-..|+..-+..|.+--+.+..+..+++.|...+..=.+.......++..|..++
T Consensus       164 ~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~Llsqi  243 (306)
T PF04849_consen  164 ALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQI  243 (306)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444433333333233333334444444455555555555555555555555555555555555555


Q ss_pred             HHHHHHHHHHH----------HHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 004698          595 SDWKRKYDQVL----------TKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSA  643 (736)
Q Consensus       595 ~e~~~~yee~~----------~~~~~~~~~~~~~i~~L~~k~~~~E~~~~~~~~q~~~~  643 (736)
                      .++.++.++..          ...|.....+..++.+|++||....+.+.++++++...
T Consensus       244 vdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQEElk~l  302 (306)
T PF04849_consen  244 VDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQEELKTL  302 (306)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            55554443222          22233344556666666666666555555555544443

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=96.52  E-value=0.0081  Score=57.47  Aligned_cols=57  Identities=28%  Similarity=0.392  Sum_probs=38.4

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      |+++|+.++|||+|+|+|++..  |.  +...+.+...+.+..     ..+|..+.+.++||+|..
T Consensus         3 i~~~G~~~~GKTsl~~~l~~~~--~~--~~~~~~~~~~~~~~~-----~~~~~~~~~~i~D~~g~~   59 (164)
T cd04139           3 VIVVGAGGVGKSALTLQFMYDE--FV--EDYEPTKADSYRKKV-----VLDGEDVQLNILDTAGQE   59 (164)
T ss_pred             EEEECCCCCCHHHHHHHHHhCC--Cc--cccCCcchhhEEEEE-----EECCEEEEEEEEECCChh
Confidence            7899999999999999999765  32  122233333333321     124566889999999954

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>COG3596 Predicted GTPase [General function prediction only]

Probab=96.52  E-value=0.0026  Score=66.50  Aligned_cols=60  Identities=33%  Similarity=0.464  Sum_probs=39.8

Q ss_pred             CCEEEEEeeCCCCCChhHHHHHHhCCC--CcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698           69 EPIGVVSVCGRARQGKSFILNQLLGRS--SGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA  140 (736)
Q Consensus        69 ~~v~vVsv~G~~rtGKS~LlN~l~~~~--~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~  140 (736)
                      .||. |-++|.++.|||.|+|.||+..  ..=.|+.++.+.|. .|..        -+|  ..++|.||+|+++
T Consensus        38 ~pvn-vLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~-~~~~--------~~~--~~l~lwDtPG~gd   99 (296)
T COG3596          38 EPVN-VLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTR-LRLS--------YDG--ENLVLWDTPGLGD   99 (296)
T ss_pred             Ccee-EEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhh-HHhh--------ccc--cceEEecCCCccc
Confidence            5765 6689999999999999999532  11224445444332 2222        133  5789999999964

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=96.51  E-value=0.0018  Score=64.76  Aligned_cols=103  Identities=19%  Similarity=0.330  Sum_probs=57.8

Q ss_pred             CCEEEEEeeCCCCCChhHHHHHHhCCCCcccc-----------cCC----CCCccceEEeeccccccccCCCCceEEEEe
Q 004698           69 EPIGVVSVCGRARQGKSFILNQLLGRSSGFQV-----------AST----HRPCTKGLWLWSAPLKRTALDGTEYNLLLL  133 (736)
Q Consensus        69 ~~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~-----------~~~----~~~~T~Giw~w~~p~~~~~~~g~~~~v~ll  133 (736)
                      +++-.|+|+|+..+|||+|++.|++......-           ...    ....|..++.+...     .+.....+.|+
T Consensus         1 k~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~-----~~~~~~~i~~i   75 (188)
T PF00009_consen    1 KNIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFE-----KNENNRKITLI   75 (188)
T ss_dssp             STEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEE-----BTESSEEEEEE
T ss_pred             CCEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhccccccccccccc-----ccccccceeec
Confidence            36778999999999999999999965321110           000    12234333333221     01234789999


Q ss_pred             ecCCCcccCCCCccchHHHHHhhhccceEEEccCCCCchHHhhhhHHH
Q 004698          134 DSEGIDAYDQTGTYSTQIFSLAVLLSSMFIYNQMGGIDESAIDRLSLV  181 (736)
Q Consensus       134 DteG~~~~~~~~~~d~~IFaLa~LLSS~~IyN~~g~i~e~~l~~L~~v  181 (736)
                      ||||...+     ....+-++...=.-++|......++....+.+.+.
T Consensus        76 DtPG~~~f-----~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~  118 (188)
T PF00009_consen   76 DTPGHEDF-----IKEMIRGLRQADIAILVVDANDGIQPQTEEHLKIL  118 (188)
T ss_dssp             EESSSHHH-----HHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHH
T ss_pred             ccccccce-----eecccceecccccceeeeecccccccccccccccc
Confidence            99995321     12334444332223356666655666666655443

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>TIGR03017 EpsF chain length determinant protein EpsF

Probab=96.51  E-value=0.87  Score=51.82  Aligned_cols=83  Identities=7%  Similarity=0.111  Sum_probs=43.1

Q ss_pred             HhhhHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHhhHH----------
Q 004698          519 KYRSIEDNMKLLKKQLEDSERYKSEYLKRY------------DDAINDKKKLADDYTSRINNLQGENISL----------  576 (736)
Q Consensus       519 k~es~e~e~~~lk~~Le~~e~~~~e~~k~~------------e~~In~lkk~~e~~e~~~~~Le~k~~sl----------  576 (736)
                      ..+-++..+..+++.++.++..+..|++++            ...++++...+..+.++....+.+....          
T Consensus       172 ~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~i~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (444)
T TIGR03017       172 AALWFVQQIAALREDLARAQSKLSAYQQEKGIVSSDERLDVERARLNELSAQLVAAQAQVMDASSKEGGSSGKDALPEVI  251 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccchhhh
Confidence            345555666666666667777777776422            1222333333333333333332222111          


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698          577 -REKSSSLSKTVDSLKNEISDWKRKY  601 (736)
Q Consensus       577 -~~r~~~L~~~le~lk~e~~e~~~~y  601 (736)
                       ..-+..|..++..++.+..+++..|
T Consensus       252 ~~~~i~~l~~~l~~le~~l~~l~~~y  277 (444)
T TIGR03017       252 ANPIIQNLKTDIARAESKLAELSQRL  277 (444)
T ss_pred             cChHHHHHHHHHHHHHHHHHHHHHHh
Confidence             1124567777777777777777777

Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=96.51  E-value=0.0039  Score=67.66  Aligned_cols=68  Identities=25%  Similarity=0.350  Sum_probs=44.3

Q ss_pred             CCEEEEEeeCCCCCChhHHHHHHhCCC--Ccc---cccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698           69 EPIGVVSVCGRARQGKSFILNQLLGRS--SGF---QVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA  140 (736)
Q Consensus        69 ~~v~vVsv~G~~rtGKS~LlN~l~~~~--~gF---~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~  140 (736)
                      -+.. |=|||+.|+|||+++|.|+|++  +++   ...+...+.|.-|-....-+   ..+|..+.+-++||||+|+
T Consensus        22 i~f~-im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l---~e~~~~~~l~vIDtpGfGD   94 (373)
T COG5019          22 IDFT-IMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAEL---EEDGFHLNLTVIDTPGFGD   94 (373)
T ss_pred             CceE-EEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeee---ecCCeEEEEEEeccCCccc
Confidence            3554 6789999999999999999972  222   12221112233333333222   2468889999999999975

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=96.50  E-value=0.0039  Score=68.79  Aligned_cols=56  Identities=34%  Similarity=0.475  Sum_probs=39.6

Q ss_pred             CEEEEEeeCCCCCChhHHHHHHhCCCCccc----ccCCCCCccceEEeeccccccccCCCCceEEEEeecCCC
Q 004698           70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQ----VASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI  138 (736)
Q Consensus        70 ~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~----~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~  138 (736)
                      .+..|+|+|.+.+|||+|+|.|.|..  +.    .+.|..+.+.-+.+         ++|  ..+.|+||.|+
T Consensus       188 ~~~~ValvG~~NvGKSSLln~L~~~~--~~v~~~~~tT~d~~~~~i~~---------~~~--~~i~l~DT~G~  247 (351)
T TIGR03156       188 DVPTVALVGYTNAGKSTLFNALTGAD--VYAADQLFATLDPTTRRLDL---------PDG--GEVLLTDTVGF  247 (351)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCc--eeeccCCccccCCEEEEEEe---------CCC--ceEEEEecCcc
Confidence            55679999999999999999999875  22    23444454433322         223  46889999997

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>cd04106 Rab23_lke Rab23-like subfamily

Probab=96.50  E-value=0.0056  Score=58.76  Aligned_cols=59  Identities=22%  Similarity=0.291  Sum_probs=39.7

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCC
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI  138 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~  138 (736)
                      |.|+|..++|||+|+|+|.+..  |.-   ....|.|...-...+.. ...+..+.+.++||+|.
T Consensus         3 v~~vG~~~~GKTsl~~~~~~~~--~~~---~~~~t~~~~~~~~~~~~-~~~~~~~~~~i~D~~G~   61 (162)
T cd04106           3 VIVVGNGNVGKSSMIQRFVKGI--FTK---DYKKTIGVDFLEKQIFL-RQSDEDVRLMLWDTAGQ   61 (162)
T ss_pred             EEEECCCCCCHHHHHHHHhcCC--CCC---CCCCcEEEEEEEEEEEE-cCCCCEEEEEEeeCCch
Confidence            7899999999999999999764  432   12345565443222222 11245688999999995

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=96.50  E-value=0.0049  Score=64.06  Aligned_cols=54  Identities=33%  Similarity=0.479  Sum_probs=37.3

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCCCcccccC---CCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           73 VVSVCGRARQGKSFILNQLLGRSSGFQVAS---THRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~---~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      -|+++|+.++|||+|+|.|.|..  ..++.   ++..++.|.+.|.         |  ..+-++||+|+.
T Consensus         2 ~v~lvG~~~~GKStLl~~Ltg~~--~~v~~~~~tT~~~~~g~~~~~---------~--~~i~l~DtpG~~   58 (233)
T cd01896           2 RVALVGFPSVGKSTLLSKLTNTK--SEVAAYEFTTLTCVPGVLEYK---------G--AKIQLLDLPGII   58 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC--ccccCCCCccccceEEEEEEC---------C--eEEEEEECCCcc
Confidence            47899999999999999999875  22221   1122345665442         2  467789999974

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>cd04159 Arl10_like Arl10-like subfamily

Probab=96.50  E-value=0.0039  Score=58.86  Aligned_cols=53  Identities=23%  Similarity=0.365  Sum_probs=37.0

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCC
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI  138 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~  138 (736)
                      |+|+|+.++|||+|+|+|.+..  |...   ...|.|+-.....      .| .+.+.++||+|.
T Consensus         2 i~i~G~~~~GKssl~~~l~~~~--~~~~---~~~t~~~~~~~~~------~~-~~~~~~~D~~g~   54 (159)
T cd04159           2 ITLVGLQNSGKTTLVNVIAGGQ--FSED---TIPTVGFNMRKVT------KG-NVTLKVWDLGGQ   54 (159)
T ss_pred             EEEEcCCCCCHHHHHHHHccCC--CCcC---ccCCCCcceEEEE------EC-CEEEEEEECCCC
Confidence            7899999999999999999875  5321   1335555443211      12 277899999995

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>cd04112 Rab26 Rab26 subfamily

Probab=96.47  E-value=0.004  Score=62.29  Aligned_cols=58  Identities=22%  Similarity=0.347  Sum_probs=38.3

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCC
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI  138 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~  138 (736)
                      |.|+|+.++|||+|+|++.+..  |..+..  +.|.|+-.-...+   ..+|..+.+.|+||+|-
T Consensus         3 i~vvG~~~vGKTSli~~~~~~~--~~~~~~--~~t~~~~~~~~~~---~~~~~~~~~~i~Dt~G~   60 (191)
T cd04112           3 VMLLGDSGVGKTCLLVRFKDGA--FLNGNF--IATVGIDFRNKVV---TVDGVKVKLQIWDTAGQ   60 (191)
T ss_pred             EEEECCCCCCHHHHHHHHhcCC--CCccCc--CCcccceeEEEEE---EECCEEEEEEEEeCCCc
Confidence            7889999999999999998765  543321  2344432222111   12455688999999994

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=96.46  E-value=1.3  Score=47.43  Aligned_cols=96  Identities=17%  Similarity=0.193  Sum_probs=65.4

Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 004698          566 INNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQE  645 (736)
Q Consensus       566 ~~~Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~yee~~~~~~~~~~~~~~~i~~L~~k~~~~E~~~~~~~~q~~~~~~  645 (736)
                      ...|+.|+..++++-..|+.+...++.+...+..+.++.+.+-=+....++.+|..|..-+..--+.+....++.-++..
T Consensus       162 le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~Lls  241 (306)
T PF04849_consen  162 LEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLS  241 (306)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35677777777777777777777777777777677666666554444566777777777555555567777777777777


Q ss_pred             HHHHHHHHHHHHHHHH
Q 004698          646 EVEEWKRKYGVAVREA  661 (736)
Q Consensus       646 E~~e~~~ky~~~~~e~  661 (736)
                      ++.++.+|......+.
T Consensus       242 qivdlQ~r~k~~~~En  257 (306)
T PF04849_consen  242 QIVDLQQRCKQLAAEN  257 (306)
T ss_pred             HHHHHHHHHHHHhhhH
Confidence            7777776666666554

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=96.46  E-value=1.6  Score=53.98  Aligned_cols=149  Identities=13%  Similarity=0.143  Sum_probs=83.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhH----------HHH
Q 004698          547 RYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSL---KNEISDWKRKYDQVLTKQKA----------MED  613 (736)
Q Consensus       547 ~~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~l---k~e~~e~~~~yee~~~~~~~----------~~~  613 (736)
                      -++..++.....+...+.++..++.++..+++++..+.+..+.+   ..+....++..++.....++          -..
T Consensus       491 l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~kv~~~rk~le~~~~d~~~e~~~~~kl~~~~~  570 (1317)
T KOG0612|consen  491 LLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSLEKVNSLRKQLEEAELDMRAESEDAGKLRKHSK  570 (1317)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHhhHhhhhh
Confidence            34455555555555555556666666666655555555555544   23344444444433333332          223


Q ss_pred             HHHHHHHH-------HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 004698          614 QVCSEIEV-------LKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVL  686 (736)
Q Consensus       614 ~~~~~i~~-------L~~k~~~~E~~~~~~~~q~~~~~~E~~e~~~ky~~~~~e~kalle~~~~~~e~~~e~~~~~~~~l  686 (736)
                      ++..+|..       +.++++.+|+--....+.....+.+....+|.+..+.... +.++..+...+...+....++.-+
T Consensus       571 e~~~~iq~~~e~~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~~~~~~e~~-~~l~~~i~sL~~~~~~~~~~l~k~  649 (1317)
T KOG0612|consen  571 ELSKQIQQELEENRDLEDKLSLLEESKSKLSKENKKLRSELEKERRQRTEISEII-AELKEEISSLEETLKAGKKELLKV  649 (1317)
T ss_pred             hhhHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHHHHhhhhHHHHH
Confidence            44555543       3345555555555566666667777777777777776644 666666777776677776666666


Q ss_pred             HHHHHhhHHHH
Q 004698          687 REEFSSTLAEK  697 (736)
Q Consensus       687 ~~e~~~~~~e~  697 (736)
                      .+ ++....|.
T Consensus       650 ~e-l~r~~~e~  659 (1317)
T KOG0612|consen  650 EE-LKRENQER  659 (1317)
T ss_pred             HH-HHHHHHHH
Confidence            66 44444443

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.45  E-value=0.87  Score=53.90  Aligned_cols=49  Identities=22%  Similarity=0.352  Sum_probs=31.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 004698          546 KRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEI  594 (736)
Q Consensus       546 k~~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e~  594 (736)
                      ++.+..|..++........+...|+.++......++.|.++++.+|.+.
T Consensus       667 ~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qL  715 (970)
T KOG0946|consen  667 RELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQL  715 (970)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5566666666666666666666666666666666666666666666443

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=96.45  E-value=0.57  Score=54.20  Aligned_cols=203  Identities=13%  Similarity=0.130  Sum_probs=94.1

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 004698          520 YRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDK----KKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEIS  595 (736)
Q Consensus       520 ~es~e~e~~~lk~~Le~~e~~~~e~~k~~e~~In~l----kk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e~~  595 (736)
                      -+......+++..++...+..+.+.+..+..=-+..    -.....+..+++.++.++..++.++..+...++.++....
T Consensus       156 ~~~~~~~~~fl~~ql~~~~~~L~~ae~~l~~f~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l~  235 (498)
T TIGR03007       156 RQDSDSAQRFIDEQIKTYEKKLEAAENRLKAFKQENGGILPDQEGDYYSEISEAQEELEAARLELNEAIAQRDALKRQLG  235 (498)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            455566788888888887777777654333211110    0111122233334444444444443333333333333222


Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HH
Q 004698          596 DWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVRE-------------AK  662 (736)
Q Consensus       596 e~~~~yee~~~~~~~~~~~~~~~i~~L~~k~~~~E~~~~~~~~q~~~~~~E~~e~~~ky~~~~~e-------------~k  662 (736)
                      .......   .........+..++.+++.++..+..+..+-+-+...++.++...+......+..             ..
T Consensus       236 ~~~~~~~---~~~~~~~~~l~~~l~~l~~~l~~l~~~y~~~hP~v~~l~~qi~~l~~~l~~~~~~~~~~~~~~~~~~~~~  312 (498)
T TIGR03007       236 GEEPVLL---AGSSVANSELDGRIEALEKQLDALRLRYTDKHPDVIATKREIAQLEEQKEEEGSAKNGGPERGEIANPVY  312 (498)
T ss_pred             cCCCCcC---cccccCCCchHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHhhccccccCcccccccChHH
Confidence            1000000   0000112244555556666555555565555555555555555555444332211             11


Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhHHH------HHHHHHHHHHHHHHHHHHHhhHHHHhhhh
Q 004698          663 AALEKAAIVQERTSKEMQQREDVLREEFSSTLAE------KEEEMKEKATKIEHAEQCLTTLRLELKVS  725 (736)
Q Consensus       663 alle~~~~~~e~~~e~~~~~~~~l~~e~~~~~~e------~~~~~~~~~~k~~~~~~~~~~~~~~l~~~  725 (736)
                      ..+.......+..++..+.+++.++.++..+..+      ...++..++..++.++.....+...+.++
T Consensus       313 ~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~el~~L~Re~~~~~~~Y~~l~~r~eea  381 (498)
T TIGR03007       313 QQLQIELAEAEAEIASLEARVAELTARIERLESLLRTIPEVEAELTQLNRDYEVNKSNYEQLLTRRESA  381 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2233333334444455555555555555444444      33456667777776666666666666554

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>COG1160 Predicted GTPases [General function prediction only]

Probab=96.45  E-value=0.011  Score=65.84  Aligned_cols=89  Identities=25%  Similarity=0.430  Sum_probs=53.0

Q ss_pred             EEEEeeCCCCCChhHHHHHHhCCCCccccc-----CCCCCccceEEeeccccccccCCCCceEEEEeecCCCcccCCC-C
Q 004698           72 GVVSVCGRARQGKSFILNQLLGRSSGFQVA-----STHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYDQT-G  145 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~-----~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~~~~-~  145 (736)
                      -+|+|+|.+..|||+|.|+|.|+..  ++-     -|..+ .-|.--|.         |  +.+.|+||.|++..+.+ -
T Consensus         4 ~~VAIVGRPNVGKSTLFNRL~g~r~--AIV~D~pGvTRDr-~y~~~~~~---------~--~~f~lIDTgGl~~~~~~~l   69 (444)
T COG1160           4 PVVAIVGRPNVGKSTLFNRLTGRRI--AIVSDTPGVTRDR-IYGDAEWL---------G--REFILIDTGGLDDGDEDEL   69 (444)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCee--eEeecCCCCccCC-ccceeEEc---------C--ceEEEEECCCCCcCCchHH
Confidence            3699999999999999999999862  221     12222 22333332         2  34788999999754422 1


Q ss_pred             cc---chHHHHHhhhccceE--EEccCCCCchHHhh
Q 004698          146 TY---STQIFSLAVLLSSMF--IYNQMGGIDESAID  176 (736)
Q Consensus       146 ~~---d~~IFaLa~LLSS~~--IyN~~g~i~e~~l~  176 (736)
                      ..   .....|+.-  +.+.  |.+..-.|+..|-.
T Consensus        70 ~~~i~~Qa~~Ai~e--ADvilfvVD~~~Git~~D~~  103 (444)
T COG1160          70 QELIREQALIAIEE--ADVILFVVDGREGITPADEE  103 (444)
T ss_pred             HHHHHHHHHHHHHh--CCEEEEEEeCCCCCCHHHHH
Confidence            11   223344444  5554  45555566776654

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=96.44  E-value=0.003  Score=66.17  Aligned_cols=22  Identities=27%  Similarity=0.380  Sum_probs=20.4

Q ss_pred             EEEeeCCCCCChhHHHHHHhCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~   94 (736)
                      ++.++|+.+.|||+|+|.|++.
T Consensus       122 ~~~~~G~sgvGKStLiN~L~~~  143 (245)
T TIGR00157       122 ISVFAGQSGVGKSSLINALDPS  143 (245)
T ss_pred             EEEEECCCCCCHHHHHHHHhhh
Confidence            6789999999999999999986

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=96.44  E-value=3  Score=49.48  Aligned_cols=115  Identities=21%  Similarity=0.265  Sum_probs=94.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhHHHHHHHHHHHHHh
Q 004698          547 RYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKY---DQVLTKQKAMEDQVCSEIEVLK  623 (736)
Q Consensus       547 ~~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~y---ee~~~~~~~~~~~~~~~i~~L~  623 (736)
                      ...+.|.+++...+...-.+..|+.+...++...+.+.+++..+...+...++..   .+.+...+...+...+++++++
T Consensus       507 ~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~  586 (698)
T KOG0978|consen  507 KLEEQILTLKASVDKLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQ  586 (698)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566677777777777777788888888888888888888888877777777766   5566777778888999999999


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698          624 SRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREA  661 (736)
Q Consensus       624 ~k~~~~E~~~~~~~~q~~~~~~E~~e~~~ky~~~~~e~  661 (736)
                      ..|.+++..+.........+++|++.+++|+...-...
T Consensus       587 ~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k~~~  624 (698)
T KOG0978|consen  587 EQYAELELELEIEKFKRKRLEEELERLKRKLERLKKEE  624 (698)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            99999999999999999999999999999998876654

>cd01856 YlqF YlqF

Probab=96.43  E-value=0.0053  Score=60.48  Aligned_cols=54  Identities=30%  Similarity=0.435  Sum_probs=36.4

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI  138 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~  138 (736)
                      .|.++|..+.|||+|+|.|.+..  |...+....+|.++-+..  +     +   ..+.++||+|+
T Consensus       117 ~~~~~G~~~vGKstlin~l~~~~--~~~~~~~~~~T~~~~~~~--~-----~---~~~~~iDtpG~  170 (171)
T cd01856         117 RAMVVGIPNVGKSTLINRLRGKK--VAKVGNKPGVTKGIQWIK--I-----S---PGIYLLDTPGI  170 (171)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC--ceeecCCCCEEeeeEEEE--e-----c---CCEEEEECCCC
Confidence            57899999999999999999875  322122223566643321  1     1   23688999997

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=96.43  E-value=1.7  Score=46.40  Aligned_cols=32  Identities=22%  Similarity=0.447  Sum_probs=16.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 004698          550 DAINDKKKLADDYTSRINNLQGENISLREKSS  581 (736)
Q Consensus       550 ~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~  581 (736)
                      +.+++++...+++.++...|-..+..+-....
T Consensus        69 eev~elK~kR~ein~kl~eL~~~~~~l~e~~~  100 (294)
T COG1340          69 EEVQELKEKRDEINAKLQELRKEYRELKEKRN  100 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            33444455555555555555555555544444

>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]

Probab=96.43  E-value=1.2  Score=44.52  Aligned_cols=86  Identities=16%  Similarity=0.228  Sum_probs=53.8

Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 004698          512 ERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLK  591 (736)
Q Consensus       512 e~~~L~~k~es~e~e~~~lk~~Le~~e~~~~e~~k~~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk  591 (736)
                      +...+..++..++.+++....-+..+...+.+..+...+.-+.           +-.++.....+++++..+..++...+
T Consensus         5 ~va~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~-----------~Kv~enr~~kdEE~~e~~e~qLkEAk   73 (205)
T KOG1003|consen    5 DVAALNRRIQLLEEELDRAQERLATALQKLEEAEQAADESERG-----------MKVIENRAQKLEEKMEAQEAQLKEAK   73 (205)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHH-----------HHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            3444555555555555555555554444444444444433332           34556666677788888888888888


Q ss_pred             HHHHHHHHHHHHHHHHh
Q 004698          592 NEISDWKRKYDQVLTKQ  608 (736)
Q Consensus       592 ~e~~e~~~~yee~~~~~  608 (736)
                      .-..+..++|++.+-+.
T Consensus        74 ~iaE~adrK~eEVarkL   90 (205)
T KOG1003|consen   74 HIAEKADRKYEEVARKL   90 (205)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            88888888888776655

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=96.42  E-value=2.7  Score=54.61  Aligned_cols=36  Identities=8%  Similarity=0.147  Sum_probs=20.1

Q ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 004698          504 RLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSER  539 (736)
Q Consensus       504 ~l~~~i~~e~~~L~~k~es~e~e~~~lk~~Le~~e~  539 (736)
                      +-+..++..+..+..++..+.+++..+...+.....
T Consensus       742 ~ri~el~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~  777 (1353)
T TIGR02680       742 RRIAELDARLAAVDDELAELARELRALGARQRALAD  777 (1353)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444455555666666666666666655555555433

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=96.42  E-value=0.73  Score=54.28  Aligned_cols=46  Identities=11%  Similarity=0.116  Sum_probs=33.7

Q ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698          621 VLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALE  666 (736)
Q Consensus       621 ~L~~k~~~~E~~~~~~~~q~~~~~~E~~e~~~ky~~~~~e~kalle  666 (736)
                      .|-.+|+.+++.+.....+......++.+|+++.+.+..+++.--+
T Consensus       423 pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee  468 (594)
T PF05667_consen  423 PLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEE  468 (594)
T ss_pred             HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5556777777777777777777778888888888888887765444

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=96.41  E-value=1.2  Score=48.87  Aligned_cols=17  Identities=24%  Similarity=0.290  Sum_probs=9.5

Q ss_pred             HHHHHHHHHHHHHHHHH
Q 004698          643 AQEEVEEWKRKYGVAVR  659 (736)
Q Consensus       643 ~~~E~~e~~~ky~~~~~  659 (736)
                      +..|+..++.+|+.+..
T Consensus       274 t~~Ev~~Lk~~~~~Le~  290 (325)
T PF08317_consen  274 TRSEVKRLKAKVDALEK  290 (325)
T ss_pred             CHHHHHHHHHHHHHHHH
Confidence            44566666666655543

>cd04124 RabL2 RabL2 subfamily

Probab=96.40  E-value=0.0054  Score=59.37  Aligned_cols=56  Identities=20%  Similarity=0.332  Sum_probs=39.0

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccc--eEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTK--GLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~--Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      |.|+|..++|||+|++++++..  |.-..   ..|.  +++.|...     .++..+.+-++||+|..
T Consensus         3 i~vvG~~~vGKTsli~~~~~~~--~~~~~---~~~~~~~~~~~~~~-----~~~~~~~~~i~Dt~G~~   60 (161)
T cd04124           3 IILLGDSAVGKSKLVERFLMDG--YEPQQ---LSTYALTLYKHNAK-----FEGKTILVDFWDTAGQE   60 (161)
T ss_pred             EEEECCCCCCHHHHHHHHHhCC--CCCCc---CCceeeEEEEEEEE-----ECCEEEEEEEEeCCCch
Confidence            6789999999999999998764  53221   1232  45555432     24666888899999953

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=96.39  E-value=0.00084  Score=82.18  Aligned_cols=80  Identities=26%  Similarity=0.353  Sum_probs=0.0

Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhh
Q 004698          614 QVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSST  693 (736)
Q Consensus       614 ~~~~~i~~L~~k~~~~E~~~~~~~~q~~~~~~E~~e~~~ky~~~~~e~kalle~~~~~~e~~~e~~~~~~~~l~~e~~~~  693 (736)
                      .++.+++.|+..+..-++.-..+.+++..++.|+.+|+.||+.-....-..++.+-...++.+.+++..+..+.....++
T Consensus       268 ~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e~~~~~EelEeaKKkL~~~L~el~e~le~~~~~~~~L  347 (859)
T PF01576_consen  268 QLEHELEQLREQLEEEEEAKSELERQLSKLNAELEQWKKKYEEEAEQRTEELEEAKKKLERKLQELQEQLEEANAKVSSL  347 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44556666777666666678888999999999999999999997665445566666556666666665555555554444

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>cd04116 Rab9 Rab9 subfamily

Probab=96.39  E-value=0.0058  Score=59.37  Aligned_cols=59  Identities=25%  Similarity=0.319  Sum_probs=40.8

Q ss_pred             EEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCC
Q 004698           72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI  138 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~  138 (736)
                      .=|.|+|+.++|||+|+|++++..  |...   ...|.|+-.+...+.   .+|..+.+.++||+|.
T Consensus         6 ~ki~vvG~~~~GKTsli~~~~~~~--~~~~---~~~~~~~~~~~~~~~---~~~~~~~l~i~D~~G~   64 (170)
T cd04116           6 LKVILLGDGGVGKSSLMNRYVTNK--FDTQ---LFHTIGVEFLNKDLE---VDGHFVTLQIWDTAGQ   64 (170)
T ss_pred             EEEEEECCCCCCHHHHHHHHHcCC--CCcC---cCCceeeEEEEEEEE---ECCeEEEEEEEeCCCh
Confidence            347899999999999999999765  5322   123556543333322   2466788999999995

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=96.39  E-value=0.0047  Score=59.47  Aligned_cols=57  Identities=25%  Similarity=0.345  Sum_probs=36.2

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      |+|+|+.++|||+|+|+|.+..  |....  .+.+.-.+-  .++   ..++..+.+-++||+|..
T Consensus         3 i~v~G~~~~GKTsli~~~~~~~--~~~~~--~~t~~~~~~--~~~---~~~~~~~~l~i~Dt~g~~   59 (164)
T smart00173        3 LVVLGSGGVGKSALTIQFVQGH--FVDDY--DPTIEDSYR--KQI---EIDGEVCLLDILDTAGQE   59 (164)
T ss_pred             EEEECCCCCCHHHHHHHHHhCc--CCccc--CCchhhhEE--EEE---EECCEEEEEEEEECCCcc
Confidence            7899999999999999999765  43221  122211111  111   123456788899999954

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd01862 Rab7 Rab7 subfamily

Probab=96.38  E-value=0.0059  Score=59.12  Aligned_cols=58  Identities=22%  Similarity=0.359  Sum_probs=36.5

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      |+|+|+.++|||+|+|+|++..  |....   ..|.|.-.+..-+.   .+|..+.+-++||+|..
T Consensus         3 i~viG~~~~GKSsl~~~l~~~~--~~~~~---~~t~~~~~~~~~~~---~~~~~~~~~~~D~~g~~   60 (172)
T cd01862           3 VIILGDSGVGKTSLMNQYVNKK--FSNQY---KATIGADFLTKEVT---VDDKLVTLQIWDTAGQE   60 (172)
T ss_pred             EEEECCCCCCHHHHHHHHhcCC--CCcCc---CCccceEEEEEEEE---ECCEEEEEEEEeCCChH
Confidence            7899999999999999999875  43321   12333211111011   12445677899999953

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]

Probab=96.37  E-value=3  Score=48.66  Aligned_cols=120  Identities=15%  Similarity=0.215  Sum_probs=90.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhHHHHHHHHHH
Q 004698          541 KSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEI-SDWKRKYDQVLTKQKAMEDQVCSEI  619 (736)
Q Consensus       541 ~~e~~k~~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e~-~e~~~~yee~~~~~~~~~~~~~~~i  619 (736)
                      .++.++.+.+.|..+...+....-....++.....++.+...+...++.++... -+++.+ +   ..+|...+.|-.++
T Consensus       514 Kee~Ek~~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~Dlqk~nrlk-Q---dear~~~~~lvqqv  589 (961)
T KOG4673|consen  514 KEETEKLLQETIEKHQAELTRQKDYYSNSRALAAALEAQALAEQATNDEARSDLQKENRLK-Q---DEARERESMLVQQV  589 (961)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhhhh-h---hHHHHHHHHHHHHH
Confidence            344557888888888888888888888888888999999988888888888733 222222 2   24556677888999


Q ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698          620 EVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEK  667 (736)
Q Consensus       620 ~~L~~k~~~~E~~~~~~~~q~~~~~~E~~e~~~ky~~~~~e~kalle~  667 (736)
                      .+|+.+++..|..+   -++-+..+.|+.++.|.|+.+..+...+..+
T Consensus       590 ~dLR~~L~~~Eq~a---arrEd~~R~Ei~~LqrRlqaaE~R~eel~q~  634 (961)
T KOG4673|consen  590 EDLRQTLSKKEQQA---ARREDMFRGEIEDLQRRLQAAERRCEELIQQ  634 (961)
T ss_pred             HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            99999888888764   3455667789999999999998888665544

>cd04136 Rap_like Rap-like subfamily

Probab=96.37  E-value=0.005  Score=59.08  Aligned_cols=57  Identities=26%  Similarity=0.372  Sum_probs=37.2

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      |.|+|+.++|||+|+|++.+..  |..  ...|.+......  .+   ..+|..+.+-++||+|..
T Consensus         4 i~i~G~~~vGKTsl~~~~~~~~--~~~--~~~~t~~~~~~~--~~---~~~~~~~~l~i~Dt~G~~   60 (163)
T cd04136           4 VVVLGSGGVGKSALTVQFVQGI--FVE--KYDPTIEDSYRK--QI---EVDGQQCMLEILDTAGTE   60 (163)
T ss_pred             EEEECCCCCCHHHHHHHHHhCC--CCc--ccCCchhhhEEE--EE---EECCEEEEEEEEECCCcc
Confidence            7899999999999999999764  532  122323222222  12   124556778899999964

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=96.37  E-value=0.0048  Score=60.00  Aligned_cols=57  Identities=26%  Similarity=0.360  Sum_probs=38.8

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCC
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI  138 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~  138 (736)
                      |.|+|+.++|||+|+|++.+..  |....   ..|.|+-.....+.   .+|..+.+.+.||+|.
T Consensus         6 i~vvG~~~~GKSsl~~~~~~~~--f~~~~---~~t~~~~~~~~~~~---~~~~~~~l~l~D~~g~   62 (167)
T cd01867           6 LLLIGDSGVGKSCLLLRFSEDS--FNPSF---ISTIGIDFKIRTIE---LDGKKIKLQIWDTAGQ   62 (167)
T ss_pred             EEEECCCCCCHHHHHHHHhhCc--CCccc---ccCccceEEEEEEE---ECCEEEEEEEEeCCch
Confidence            7899999999999999999875  53321   23455433222221   1355578999999995

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd01854 YjeQ_engC YjeQ/EngC

Probab=96.37  E-value=0.0044  Score=66.52  Aligned_cols=59  Identities=27%  Similarity=0.424  Sum_probs=36.9

Q ss_pred             EEEEeeCCCCCChhHHHHHHhCCCCcccccCC-----C-CCccceEEeeccccccccCCCCceEEEEeecCCCccc
Q 004698           72 GVVSVCGRARQGKSFILNQLLGRSSGFQVAST-----H-RPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAY  141 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~-----~-~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~  141 (736)
                      .+++++|+.++|||+|+|.|+|... +.+|.-     . ...|....++..|      ++    .+|+||||+..+
T Consensus       162 k~~~~~G~sg~GKSTlin~l~~~~~-~~~g~v~~~~~~g~~tT~~~~~~~~~------~~----~~liDtPG~~~~  226 (287)
T cd01854         162 KTSVLVGQSGVGKSTLINALLPDLD-LATGEISEKLGRGRHTTTHRELFPLP------GG----GLLIDTPGFREF  226 (287)
T ss_pred             ceEEEECCCCCCHHHHHHHHhchhh-ccccceeccCCCCCcccceEEEEEcC------CC----CEEEECCCCCcc
Confidence            3689999999999999999998631 122211     1 1234444443322      11    268999998543

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=96.36  E-value=0.0057  Score=59.20  Aligned_cols=57  Identities=23%  Similarity=0.343  Sum_probs=37.7

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCC
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI  138 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~  138 (736)
                      |.|+|+.++|||+|+|++++..  |....   ..|.|+-.....+.   .+|..+.+-++||+|.
T Consensus         5 i~i~G~~~vGKSsli~~~~~~~--~~~~~---~~t~~~~~~~~~~~---~~~~~~~~~i~D~~G~   61 (166)
T cd01869           5 LLLIGDSGVGKSCLLLRFADDT--YTESY---ISTIGVDFKIRTIE---LDGKTIKLQIWDTAGQ   61 (166)
T ss_pred             EEEECCCCCCHHHHHHHHhcCC--CCCCC---CCccceeEEEEEEE---ECCEEEEEEEEECCCc
Confidence            7899999999999999999765  54321   22444322111121   1355678899999994

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]

Probab=96.34  E-value=0.77  Score=52.73  Aligned_cols=205  Identities=13%  Similarity=0.175  Sum_probs=103.3

Q ss_pred             cCCCchhHHHHHHHHHhhhhh------HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698          477 CHGPGKWQKLATFLQQSSEGP------ILDLVKRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDD  550 (736)
Q Consensus       477 ~~Gp~K~~~L~~fLq~~~~~~------il~~~~~l~~~i~~e~~~L~~k~es~e~e~~~lk~~Le~~e~~~~e~~k~~e~  550 (736)
                      +.+|.....+.+||+......      =....+--..+.++.++.|..|+.-+.+.++...+.+...|--+++.+..+-.
T Consensus        78 iP~~~taa~i~eWles~~p~~~~~s~~~~~~yQerLaRLe~dkesL~LQvsvLteqVeaQgEKIrDLE~cie~kr~kLna  157 (861)
T KOG1899|consen   78 IPDPQTAARIAEWLESPSPSMSTVSCPEYPEYQERLARLEMDKESLQLQVSVLTEQVEAQGEKIRDLETCIEEKRNKLNA  157 (861)
T ss_pred             CCCchHHHHHHHHHhccCCCCCCccCCcchHHHHHHHHHhcchhhheehHHHHHHHHHHhhhhHHHHHHHHHHHHhhhch
Confidence            345556666777776433110      00111222335566788888888777777776666665555554444332222


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHH
Q 004698          551 AINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAE  630 (736)
Q Consensus       551 ~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~yee~~~~~~~~~~~~~~~i~~L~~k~~~~E  630 (736)
                      .-..++.++    -..+.||.+.-.+..+++.|+=.+-++.++..+...+.        ..++.+.+++.  +.|...++
T Consensus       158 tEEmLQqel----lsrtsLETqKlDLmaevSeLKLkltalEkeq~e~E~K~--------R~se~l~qevn--~~kv~e~~  223 (861)
T KOG1899|consen  158 TEEMLQQEL----LSRTSLETQKLDLMAEVSELKLKLTALEKEQNETEKKL--------RLSENLMQEVN--QSKVGEVV  223 (861)
T ss_pred             HHHHHHHHH----HhhhhHHHHHhHHHHHHHHhHHHHHHHHHHhhhHHHHH--------HhHHHHHHHHH--HHHHHHHH
Confidence            212221111    11144444444444444444444444444443333332        11233334444  45556666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhHH
Q 004698          631 ARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLA  695 (736)
Q Consensus       631 ~~~~~~~~q~~~~~~E~~e~~~ky~~~~~e~kalle~~~~~~e~~~e~~~~~~~~l~~e~~~~~~  695 (736)
                      ..-.+++..+.+++-|.+-++.....-..+.+-++.++..-..-..+..-.|...|+..+.++..
T Consensus       224 ~erlqye~klkstk~e~a~L~Eq~~eK~~e~~rl~~~lv~~~~~d~e~~~~rd~~lk~a~eslm~  288 (861)
T KOG1899|consen  224 QERLQYETKLKSTKGEMAPLREQRSEKNDEEMRLLRTLVQRLMADGEHKSLRDNTLKNALESLMR  288 (861)
T ss_pred             HHHHHHHhhcccccchhhhHHHHHhhhhhHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHh
Confidence            66666666666666666666655555555566666666654444444444455555555555543

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=96.33  E-value=0.006  Score=58.20  Aligned_cols=56  Identities=27%  Similarity=0.345  Sum_probs=35.4

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCC
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI  138 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~  138 (736)
                      |.|+|+.++|||+|+|+|.+..  |.-  ...|.+...+...  +.   .+|..+.+-++||.|.
T Consensus         4 i~iiG~~~vGKTsl~~~~~~~~--~~~--~~~~t~~~~~~~~--~~---~~~~~~~~~i~Dt~G~   59 (162)
T cd04138           4 LVVVGAGGVGKSALTIQLIQNH--FVD--EYDPTIEDSYRKQ--VV---IDGETCLLDILDTAGQ   59 (162)
T ss_pred             EEEECCCCCCHHHHHHHHHhCC--CcC--CcCCcchheEEEE--EE---ECCEEEEEEEEECCCC
Confidence            6899999999999999999765  422  1112222222221  11   1344566778999995

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.32  E-value=0.0057  Score=66.80  Aligned_cols=64  Identities=23%  Similarity=0.264  Sum_probs=42.3

Q ss_pred             EEeeCCCCCChhHHHHHHhCCC----CcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698           74 VSVCGRARQGKSFILNQLLGRS----SGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA  140 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~----~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~  140 (736)
                      |=|+|+.++|||+|+|.||++.    .-+...+..-..|..|-....-+   .++|....+-++||||+|+
T Consensus        24 lmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~i---ee~g~~l~LtvidtPGfGD   91 (366)
T KOG2655|consen   24 LMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEI---EENGVKLNLTVIDTPGFGD   91 (366)
T ss_pred             EEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeee---cCCCeEEeeEEeccCCCcc
Confidence            6789999999999999999873    01111111122244443333222   4678889999999999974

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=96.31  E-value=0.0042  Score=62.29  Aligned_cols=66  Identities=15%  Similarity=0.268  Sum_probs=42.5

Q ss_pred             EEEEEeeCCCCCChhHHHHHHhCCCCcccccCCC---------CCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVASTH---------RPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        71 v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~---------~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      +.-|+|+|..++|||+|+|+|++....|.-..++         ...|.|+=+.......   ++..+.+.|+||+|..
T Consensus         2 ~r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~---~~~~~~~~l~DtpG~~   76 (194)
T cd01891           2 IRNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAV---TYKDTKINIVDTPGHA   76 (194)
T ss_pred             ccEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEE---EECCEEEEEEECCCcH
Confidence            3468999999999999999999754445432211         1124555444332221   2345789999999964

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>cd04109 Rab28 Rab28 subfamily

Probab=96.31  E-value=0.0075  Score=61.63  Aligned_cols=58  Identities=21%  Similarity=0.229  Sum_probs=41.4

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCC
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI  138 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~  138 (736)
                      |.|+|..++|||+|+|+|.+..  |.-   ....|.|+-.+...+..  +++..+.+.+.||.|.
T Consensus         3 i~ivG~~~vGKSsLi~~l~~~~--~~~---~~~~T~~~d~~~~~i~~--~~~~~~~~~i~Dt~G~   60 (215)
T cd04109           3 IVVLGDGAVGKTSLCRRFAKEG--FGK---SYKQTIGLDFFSKRVTL--PGNLNVTLQVWDIGGQ   60 (215)
T ss_pred             EEEECcCCCCHHHHHHHHhcCC--CCC---CCCCceeEEEEEEEEEe--CCCCEEEEEEEECCCc
Confidence            6899999999999999999765  532   22457776655433322  2345688999999994

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>PRK04213 GTP-binding protein; Provisional

Probab=96.30  E-value=0.0075  Score=60.58  Aligned_cols=56  Identities=23%  Similarity=0.310  Sum_probs=36.7

Q ss_pred             EEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698           71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA  140 (736)
Q Consensus        71 v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~  140 (736)
                      ..-|+|+|..++|||+|+|.|.|..  |.++..  | +.+....  .+.    .+   .+.++||+|++.
T Consensus         9 ~~~i~i~G~~~~GKSsLin~l~~~~--~~~~~~--~-~~t~~~~--~~~----~~---~~~l~Dt~G~~~   64 (201)
T PRK04213          9 KPEIVFVGRSNVGKSTLVRELTGKK--VRVGKR--P-GVTRKPN--HYD----WG---DFILTDLPGFGF   64 (201)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC--CccCCC--C-ceeeCce--EEe----ec---ceEEEeCCcccc
Confidence            4468999999999999999999875  654432  2 1122111  111    12   478899999753

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=96.30  E-value=4.2  Score=49.57  Aligned_cols=85  Identities=12%  Similarity=0.161  Sum_probs=43.1

Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 004698          567 NNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYD---QVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSA  643 (736)
Q Consensus       567 ~~Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~ye---e~~~~~~~~~~~~~~~i~~L~~k~~~~E~~~~~~~~q~~~~  643 (736)
                      ...+.+...+..++..+++.|..-+........-|+   +...+..+.-+.++..+..|....++-+..-..+.+|+..+
T Consensus       325 ~~e~~k~e~i~~~i~e~~~~l~~k~~~~~~~~~~~~~~ke~~~~~s~~~e~~e~~~eslt~G~Ss~~~~e~~l~~ql~~a  404 (1174)
T KOG0933|consen  325 NGEEEKLEEIRKNIEEDRKKLKEKEKAMAKVEEGYEKLKEAFQEDSKLLEKAEELVESLTAGLSSNEDEEKTLEDQLRDA  404 (1174)
T ss_pred             hhhHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccchhhHHHHHHHH
Confidence            333444444444444444444444444444444442   22233333344556666666666666666555666666666


Q ss_pred             HHHHHHHH
Q 004698          644 QEEVEEWK  651 (736)
Q Consensus       644 ~~E~~e~~  651 (736)
                      +..+++..
T Consensus       405 K~~~~~~~  412 (1174)
T KOG0933|consen  405 KITLSEAS  412 (1174)
T ss_pred             HHHHHHHH
Confidence            66654443

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=96.29  E-value=0.0062  Score=63.11  Aligned_cols=23  Identities=30%  Similarity=0.452  Sum_probs=21.6

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      +|||+||.|+|||||||.+.|-.
T Consensus        31 fvsilGpSGcGKSTLLriiAGL~   53 (248)
T COG1116          31 FVAILGPSGCGKSTLLRLIAGLE   53 (248)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            89999999999999999999865

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=96.28  E-value=0.0086  Score=58.44  Aligned_cols=60  Identities=20%  Similarity=0.291  Sum_probs=41.2

Q ss_pred             EEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      .-|.|+|+.++|||+|+|++++..  |.-.   ...|.|+......+..   +|..+.+-++||.|..
T Consensus         3 ~ki~vvG~~~vGKTsli~~~~~~~--~~~~---~~~t~~~~~~~~~~~~---~~~~~~~~i~Dt~G~~   62 (170)
T cd04115           3 FKIIVIGDSNVGKTCLTYRFCAGR--FPER---TEATIGVDFRERTVEI---DGERIKVQLWDTAGQE   62 (170)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCC--CCCc---cccceeEEEEEEEEEE---CCeEEEEEEEeCCChH
Confidence            458999999999999999998754  5321   2345565433322221   3556889999999954

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=96.26  E-value=0.0049  Score=65.94  Aligned_cols=65  Identities=18%  Similarity=0.332  Sum_probs=36.9

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCccccc----CCCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVA----STHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA  140 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~----~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~  140 (736)
                      |=|+|..|+|||+|+|.|++..- +...    +...+....+-+-...+.. ..+|..+.+-++||+|+|+
T Consensus         7 ImVvG~sG~GKTTFIntL~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~l-~e~~~~l~LtiiDTpGfGd   75 (281)
T PF00735_consen    7 IMVVGESGLGKTTFINTLFNSDI-ISEDSSIPPPSASISRTLEIEERTVEL-EENGVKLNLTIIDTPGFGD   75 (281)
T ss_dssp             EEEEECTTSSHHHHHHHHHTSS----------S------SCEEEEEEEEEE-EETCEEEEEEEEEEC-CSS
T ss_pred             EEEECCCCCCHHHHHHHHHhccc-ccccccccccccccccccceeeEEEEe-ccCCcceEEEEEeCCCccc
Confidence            56899999999999999998741 1111    0111112222222222222 2356778899999999974

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=96.26  E-value=0.018  Score=65.20  Aligned_cols=56  Identities=32%  Similarity=0.614  Sum_probs=36.0

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCCCcc--cccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           73 VVSVCGRARQGKSFILNQLLGRSSGF--QVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~~gF--~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      .|+|+|..++|||+|+|+|+|....+  ...+.+..+..+..-|.         |  ..+.|+||+|+.
T Consensus         1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~---------~--~~~~liDTpG~~   58 (429)
T TIGR03594         1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWG---------G--REFILIDTGGIE   58 (429)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEEC---------C--eEEEEEECCCCC
Confidence            38999999999999999999876221  11111112223333332         2  358899999985

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>cd04127 Rab27A Rab27a subfamily

Probab=96.25  E-value=0.0084  Score=58.81  Aligned_cols=62  Identities=21%  Similarity=0.162  Sum_probs=40.1

Q ss_pred             EEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccc-------cCCCCceEEEEeecCCC
Q 004698           72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRT-------ALDGTEYNLLLLDSEGI  138 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~-------~~~g~~~~v~llDteG~  138 (736)
                      .=|.|+|+.++|||+|+|++.+..  |.-.   ...|.|+......+...       .-++..+.+-|+||+|.
T Consensus         5 ~ki~ivG~~~vGKTsli~~~~~~~--~~~~---~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~   73 (180)
T cd04127           5 IKFLALGDSGVGKTSFLYQYTDNK--FNPK---FITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQ   73 (180)
T ss_pred             EEEEEECCCCCCHHHHHHHHhcCC--CCcc---CCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCCh
Confidence            347899999999999999998765  5322   12355554433222111       11245688999999994

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>cd00879 Sar1 Sar1 subfamily

Probab=96.24  E-value=0.015  Score=57.62  Aligned_cols=67  Identities=18%  Similarity=0.219  Sum_probs=41.4

Q ss_pred             HHHHHHhhccCCCEEEEEeeCCCCCChhHHHHHHhCCCCccc-ccCCCCCccceEEeeccccccccCCCCceEEEEeecC
Q 004698           58 PEAVAALQLVKEPIGVVSVCGRARQGKSFILNQLLGRSSGFQ-VASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSE  136 (736)
Q Consensus        58 ~eAl~~L~~i~~~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~-~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDte  136 (736)
                      ..+++.|.....+.. |.|+|+.++|||+|+|+|.+..  |. ..++..+ +.|...|         +  .+.+.++||+
T Consensus         7 ~~~~~~~~~~~~~~k-i~ilG~~~~GKStLi~~l~~~~--~~~~~~T~~~-~~~~i~~---------~--~~~~~l~D~~   71 (190)
T cd00879           7 YNVLSSLGLYNKEAK-ILFLGLDNAGKTTLLHMLKDDR--LAQHVPTLHP-TSEELTI---------G--NIKFKTFDLG   71 (190)
T ss_pred             HHHHHHhhcccCCCE-EEEECCCCCCHHHHHHHHhcCC--CcccCCccCc-ceEEEEE---------C--CEEEEEEECC
Confidence            345555543444444 5999999999999999999765  32 1222222 2233222         1  2568899999


Q ss_pred             CCc
Q 004698          137 GID  139 (736)
Q Consensus       137 G~~  139 (736)
                      |..
T Consensus        72 G~~   74 (190)
T cd00879          72 GHE   74 (190)
T ss_pred             CCH
Confidence            953

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd01863 Rab18 Rab18 subfamily

Probab=96.24  E-value=0.007  Score=58.09  Aligned_cols=58  Identities=24%  Similarity=0.375  Sum_probs=36.7

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      |.|+|+.++|||+|+|+|++..  |...   ...|.|.=.-...+.   .++..+.+.|+||+|..
T Consensus         3 i~v~G~~~~GKSsli~~l~~~~--~~~~---~~~~~~~~~~~~~~~---~~~~~~~~~l~D~~g~~   60 (161)
T cd01863           3 ILLIGDSGVGKSSLLLRFTDDT--FDPD---LAATIGVDFKVKTLT---VDGKKVKLAIWDTAGQE   60 (161)
T ss_pred             EEEECCCCCCHHHHHHHHHcCC--CCcc---cCCcccceEEEEEEE---ECCEEEEEEEEECCCch
Confidence            7899999999999999999765  4321   122333211110010   12445789999999953

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=96.24  E-value=0.012  Score=62.69  Aligned_cols=59  Identities=31%  Similarity=0.361  Sum_probs=37.9

Q ss_pred             CEEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698           70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA  140 (736)
Q Consensus        70 ~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~  140 (736)
                      +...|.|+|.+++|||+|+|.|.|.. ...+++. -.+|++. -|..   .    +.  .+.|+||||+-.
T Consensus       117 ~~~~~~~vG~~nvGKSslin~l~~~~-~~~~~~~-~g~T~~~-~~~~---~----~~--~~~l~DtPG~~~  175 (276)
T TIGR03596       117 RPIRAMIVGIPNVGKSTLINRLAGKK-VAKVGNR-PGVTKGQ-QWIK---L----SD--GLELLDTPGILW  175 (276)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCC-ccccCCC-CCeecce-EEEE---e----CC--CEEEEECCCccc
Confidence            34569999999999999999999864 1233332 1234442 2211   1    11  368999999853

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]

Probab=96.24  E-value=0.0079  Score=61.50  Aligned_cols=64  Identities=23%  Similarity=0.324  Sum_probs=41.0

Q ss_pred             EEeeCCCCCChhHHHHHHhCCC---CcccccCC-CCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698           74 VSVCGRARQGKSFILNQLLGRS---SGFQVAST-HRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA  140 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~---~gF~~~~~-~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~  140 (736)
                      |-|+|..+.|||+|.|.|+...   ++-.++.. .-|.|.-|-.-...+   ..+|-+..+-++||+|||+
T Consensus        49 IMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvi---eE~gVklkltviDTPGfGD  116 (336)
T KOG1547|consen   49 IMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVI---EEKGVKLKLTVIDTPGFGD  116 (336)
T ss_pred             EEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeee---eecceEEEEEEecCCCccc
Confidence            6678999999999999999542   11122211 223444444433332   2457778899999999974

>PRK11281 hypothetical protein; Provisional

Probab=96.23  E-value=4.8  Score=50.95  Aligned_cols=93  Identities=10%  Similarity=0.104  Sum_probs=45.0

Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH-HHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 004698          513 RSSLMLKYRSIEDNMKLLKKQLEDSERYKSEY-LKRYD-DAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSL  590 (736)
Q Consensus       513 ~~~L~~k~es~e~e~~~lk~~Le~~e~~~~e~-~k~~e-~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~l  590 (736)
                      ...++.+++.+.+++....+.+++..+..... .+.+. ..+.+++..+.+.+.+..+.+.++..+..++..+....+..
T Consensus        82 ~~~L~k~l~~Ap~~l~~a~~~Le~Lk~~~~~~~~~~~~~~Sl~qLEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERA  161 (1113)
T PRK11281         82 TEQLKQQLAQAPAKLRQAQAELEALKDDNDEETRETLSTLSLRQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERA  161 (1113)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHhhccccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHH
Confidence            44455555555555554444444322210000 01111 22244455555555555666666666666666666666666


Q ss_pred             HHHHHHHHHHHHHHH
Q 004698          591 KNEISDWKRKYDQVL  605 (736)
Q Consensus       591 k~e~~e~~~~yee~~  605 (736)
                      +...++.+++-++.-
T Consensus       162 Q~~lsea~~RlqeI~  176 (1113)
T PRK11281        162 QAALYANSQRLQQIR  176 (1113)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            666566555554443

>cd00876 Ras Ras family

Probab=96.22  E-value=0.0074  Score=57.43  Aligned_cols=57  Identities=30%  Similarity=0.420  Sum_probs=36.5

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      |.|+|+.++|||+|+|.|++..  |.-  ...+.+.-.+.+  .+.   .++..+.+.++||+|..
T Consensus         2 i~i~G~~~~GKTsli~~l~~~~--~~~--~~~~~~~~~~~~--~~~---~~~~~~~~~l~D~~g~~   58 (160)
T cd00876           2 VVVLGAGGVGKSAITIQFVKGT--FVE--EYDPTIEDSYRK--TIV---VDGETYTLDILDTAGQE   58 (160)
T ss_pred             EEEECCCCCCHHHHHHHHHhCC--CCc--CcCCChhHeEEE--EEE---ECCEEEEEEEEECCChH
Confidence            7899999999999999999765  322  222333222222  111   12445778899999953

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=96.20  E-value=0.0082  Score=58.56  Aligned_cols=58  Identities=16%  Similarity=0.267  Sum_probs=39.5

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      |.|+|+.++|||+|+|+++...  |...   ...|.|+-+....+.   .++..+.+.++||.|..
T Consensus         3 i~vvG~~~vGKTsli~~~~~~~--~~~~---~~~t~~~~~~~~~~~---~~~~~~~l~i~Dt~G~~   60 (166)
T cd00877           3 LVLVGDGGTGKTTFVKRHLTGE--FEKK---YVATLGVEVHPLDFH---TNRGKIRFNVWDTAGQE   60 (166)
T ss_pred             EEEECCCCCCHHHHHHHHHhCC--CCCC---CCCceeeEEEEEEEE---ECCEEEEEEEEECCCCh
Confidence            7899999999999999998654  4321   234555543322221   24556889999999964

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd04155 Arl3 Arl3 subfamily

Probab=96.20  E-value=0.016  Score=56.31  Aligned_cols=57  Identities=26%  Similarity=0.340  Sum_probs=36.2

Q ss_pred             CCCEEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCC
Q 004698           68 KEPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI  138 (736)
Q Consensus        68 ~~~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~  138 (736)
                      ..++ -|+|+|+.++|||+|+|.|.|..  |..    ...|.|+-.-  .+   ..+|  ..+.++||+|.
T Consensus        12 ~~~~-~v~i~G~~g~GKStLl~~l~~~~--~~~----~~~t~g~~~~--~i---~~~~--~~~~~~D~~G~   68 (173)
T cd04155          12 SEEP-RILILGLDNAGKTTILKQLASED--ISH----ITPTQGFNIK--TV---QSDG--FKLNVWDIGGQ   68 (173)
T ss_pred             CCcc-EEEEEccCCCCHHHHHHHHhcCC--Ccc----cCCCCCcceE--EE---EECC--EEEEEEECCCC
Confidence            3444 39999999999999999999864  321    1224452111  00   0122  56788999995

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>cd00157 Rho Rho (Ras homology) family

Probab=96.19  E-value=0.009  Score=57.76  Aligned_cols=57  Identities=25%  Similarity=0.348  Sum_probs=37.9

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      |.|+|+.++|||+|+|+|++..  |...  ..+.....+....+     .+|..+.+.++||+|..
T Consensus         3 i~i~G~~~~GKSsli~~l~~~~--~~~~--~~~~~~~~~~~~~~-----~~~~~~~l~~~D~~g~~   59 (171)
T cd00157           3 IVVVGDGAVGKTCLLISYTTGK--FPTE--YVPTVFDNYSATVT-----VDGKQVNLGLWDTAGQE   59 (171)
T ss_pred             EEEECCCCCCHHHHHHHHHhCC--CCCC--CCCceeeeeEEEEE-----ECCEEEEEEEEeCCCcc
Confidence            6799999999999999999875  4221  11222222222222     23566889999999975

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>cd04110 Rab35 Rab35 subfamily

Probab=96.18  E-value=0.0077  Score=60.72  Aligned_cols=57  Identities=21%  Similarity=0.286  Sum_probs=38.9

Q ss_pred             EEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEE--eeccccccccCCCCceEEEEeecCCC
Q 004698           72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLW--LWSAPLKRTALDGTEYNLLLLDSEGI  138 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw--~w~~p~~~~~~~g~~~~v~llDteG~  138 (736)
                      .=|.|+|+.++|||+|+|+|++..  |..   .-..|.|+-  +|..-     .+|..+.+.|+||+|.
T Consensus         7 ~kivvvG~~~vGKTsli~~l~~~~--~~~---~~~~t~~~~~~~~~~~-----~~~~~~~l~l~D~~G~   65 (199)
T cd04110           7 FKLLIIGDSGVGKSSLLLRFADNT--FSG---SYITTIGVDFKIRTVE-----INGERVKLQIWDTAGQ   65 (199)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCC--CCC---CcCccccceeEEEEEE-----ECCEEEEEEEEeCCCc
Confidence            348899999999999999999875  531   113355532  33221     1355678899999995

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>PLN03118 Rab family protein; Provisional

Probab=96.17  E-value=0.0078  Score=61.20  Aligned_cols=60  Identities=22%  Similarity=0.303  Sum_probs=39.5

Q ss_pred             CEEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        70 ~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      ++. |.|+|+.++|||+|+|+|++..  |..   . ..|.|+-.+...+.   .+|..+.+.|+||+|..
T Consensus        14 ~~k-v~ivG~~~vGKTsli~~l~~~~--~~~---~-~~t~~~~~~~~~~~---~~~~~~~l~l~Dt~G~~   73 (211)
T PLN03118         14 SFK-ILLIGDSGVGKSSLLVSFISSS--VED---L-APTIGVDFKIKQLT---VGGKRLKLTIWDTAGQE   73 (211)
T ss_pred             ceE-EEEECcCCCCHHHHHHHHHhCC--CCC---c-CCCceeEEEEEEEE---ECCEEEEEEEEECCCch
Confidence            344 6699999999999999999865  421   1 23455432222221   23556789999999953

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=96.17  E-value=2.6  Score=46.09  Aligned_cols=92  Identities=18%  Similarity=0.233  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 004698          556 KKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAA  635 (736)
Q Consensus       556 kk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~yee~~~~~~~~~~~~~~~i~~L~~k~~~~E~~~~~  635 (736)
                      ...++.+..+...|......+..-+..+.....+++.++..++..-.+.-+-       =..++..++..+...+..+.+
T Consensus       155 ~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~-------D~~eL~~lr~eL~~~~~~i~~  227 (325)
T PF08317_consen  155 EENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIESC-------DQEELEALRQELAEQKEEIEA  227 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc-------CHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444444444444444444444444444444333221111       123333444444444444444


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 004698          636 AREQALSAQEEVEEWKRKY  654 (736)
Q Consensus       636 ~~~q~~~~~~E~~e~~~ky  654 (736)
                      .++.+..++.+..+|+.+.
T Consensus       228 ~k~~l~el~~el~~l~~~i  246 (325)
T PF08317_consen  228 KKKELAELQEELEELEEKI  246 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            4444444444444444443

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=96.16  E-value=0.01  Score=60.44  Aligned_cols=22  Identities=36%  Similarity=0.603  Sum_probs=20.1

Q ss_pred             EEeeCCCCCChhHHHHHHhCCC
Q 004698           74 VSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      |+|+|..++|||+|+|+|++..
T Consensus         2 i~iiG~~~~GKStL~~~Ll~~~   23 (208)
T cd04166           2 FLTCGSVDDGKSTLIGRLLYDS   23 (208)
T ss_pred             EEEEECCCCCHHHHHHHHHHHc
Confidence            7899999999999999998754

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>cd04111 Rab39 Rab39 subfamily

Probab=96.15  E-value=0.0092  Score=60.94  Aligned_cols=58  Identities=26%  Similarity=0.327  Sum_probs=40.2

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCC
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI  138 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~  138 (736)
                      |.|+|+.++|||+|+|+|++..  |...   ...|.|+-.+...+..  .+|..+.+.+.||+|.
T Consensus         5 IvvvG~~~vGKTsLi~~l~~~~--~~~~---~~~ti~~d~~~~~i~~--~~~~~~~l~i~Dt~G~   62 (211)
T cd04111           5 LIVIGDSTVGKSSLLKRFTEGR--FAEV---SDPTVGVDFFSRLIEI--EPGVRIKLQLWDTAGQ   62 (211)
T ss_pred             EEEECCCCCCHHHHHHHHHcCC--CCCC---CCceeceEEEEEEEEE--CCCCEEEEEEEeCCcc
Confidence            7899999999999999999765  5322   2346665443322211  2456688999999995

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>PRK00093 GTP-binding protein Der; Reviewed

Probab=96.15  E-value=0.023  Score=64.53  Aligned_cols=56  Identities=36%  Similarity=0.631  Sum_probs=37.9

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCCCcccccC---CCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698           73 VVSVCGRARQGKSFILNQLLGRSSGFQVAS---THRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA  140 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~---~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~  140 (736)
                      .|+|+|..++|||+|+|+|.|....+ +..   .+.....+.+.|.         |  +.+.|+||+|+..
T Consensus         3 ~I~ivG~~~vGKStL~n~l~~~~~~~-v~~~~~~t~d~~~~~~~~~---------~--~~~~liDT~G~~~   61 (435)
T PRK00093          3 VVAIVGRPNVGKSTLFNRLTGKRDAI-VADTPGVTRDRIYGEAEWL---------G--REFILIDTGGIEP   61 (435)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcee-eCCCCCCcccceEEEEEEC---------C--cEEEEEECCCCCC
Confidence            58999999999999999999876221 111   1112223444442         2  5689999999864

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex

Probab=96.13  E-value=4  Score=47.79  Aligned_cols=136  Identities=10%  Similarity=0.159  Sum_probs=96.4

Q ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 004698          503 KRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYL---KRYDDAINDKKKLADDYTSRINNLQGENISLREK  579 (736)
Q Consensus       503 ~~l~~~i~~e~~~L~~k~es~e~e~~~lk~~Le~~e~~~~e~~---k~~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r  579 (736)
                      ..+.+. +++.+.|..++..-+.++..+.-.|.++++.....+   +...+.+...+..-+.+.++......-+......
T Consensus       233 ~E~n~k-Ekqvs~L~~q~~eKen~~kdl~~~l~es~~~~~qLeE~~~~q~E~Lkes~~~qe~L~~eL~~~K~slq~~~~t  311 (786)
T PF05483_consen  233 KEVNDK-EKQVSLLQTQLKEKENKIKDLLLLLQESQDKCNQLEEKTKEQHENLKESNEEQEHLLQELEDIKQSLQESEST  311 (786)
T ss_pred             HHhhhH-HHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            445555 888999999999999999999999998888766654   3444556666666677777776666666666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 004698          580 SSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQ  639 (736)
Q Consensus       580 ~~~L~~~le~lk~e~~e~~~~yee~~~~~~~~~~~~~~~i~~L~~k~~~~E~~~~~~~~q  639 (736)
                      ...|..+++...+.+.++...-+..+...+.....-...+++++.....+++.+..-..+
T Consensus       312 q~~le~~lq~~~k~~~qlt~eKe~~~Ee~nk~k~~~s~~v~e~qtti~~L~~lL~~Eqqr  371 (786)
T PF05483_consen  312 QKALEEDLQQATKTLIQLTEEKEAQMEELNKAKAQHSFVVTELQTTICNLKELLTTEQQR  371 (786)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            677788888888888888877777777666666666666666666666665554433333

Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=96.13  E-value=3.1  Score=46.54  Aligned_cols=56  Identities=9%  Similarity=0.224  Sum_probs=39.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698          546 KRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKY  601 (736)
Q Consensus       546 k~~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~y  601 (736)
                      .+++.+|++++..+.+++.++...+.++..+..++..+...+..+..+..+-+..+
T Consensus        62 ~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~r~qr~~L  117 (420)
T COG4942          62 AKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQEREQRRRL  117 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677777777777777777777777777777777777777777776654444444

>cd04123 Rab21 Rab21 subfamily

Probab=96.13  E-value=0.0094  Score=56.82  Aligned_cols=56  Identities=21%  Similarity=0.436  Sum_probs=36.0

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCcc-ceEEeeccccccccCCCCceEEEEeecCCC
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCT-KGLWLWSAPLKRTALDGTEYNLLLLDSEGI  138 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T-~Giw~w~~p~~~~~~~g~~~~v~llDteG~  138 (736)
                      |+|+|+.++|||+|+|+|++..  |.-  ...+.+ ..++-..  +.   ..+..+.+.++||+|.
T Consensus         3 i~i~G~~~~GKStli~~l~~~~--~~~--~~~~~~~~~~~~~~--~~---~~~~~~~~~~~D~~g~   59 (162)
T cd04123           3 VVLLGEGRVGKTSLVLRYVENK--FNE--KHESTTQASFFQKT--VN---IGGKRIDLAIWDTAGQ   59 (162)
T ss_pred             EEEECCCCCCHHHHHHHHHhCC--CCC--CcCCccceeEEEEE--EE---ECCEEEEEEEEECCch
Confidence            7899999999999999999765  422  111222 2222221  11   1245578899999994

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd04177 RSR1 RSR1 subgroup

Probab=96.13  E-value=0.0093  Score=58.00  Aligned_cols=58  Identities=24%  Similarity=0.421  Sum_probs=38.5

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA  140 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~  140 (736)
                      |+++|+.++|||+|+|++.+..  |.  .+..|.+...|..  .+.   -++..+.+-++||+|...
T Consensus         4 i~liG~~~~GKTsli~~~~~~~--~~--~~~~~t~~~~~~~--~~~---~~~~~~~~~i~Dt~G~~~   61 (168)
T cd04177           4 IVVLGAGGVGKSALTVQFVQNV--FI--ESYDPTIEDSYRK--QVE---IDGRQCDLEILDTAGTEQ   61 (168)
T ss_pred             EEEECCCCCCHHHHHHHHHhCC--CC--cccCCcchheEEE--EEE---ECCEEEEEEEEeCCCccc
Confidence            7899999999999999998665  42  2233333334322  221   134557888999999653

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=96.11  E-value=0.01  Score=58.31  Aligned_cols=54  Identities=28%  Similarity=0.417  Sum_probs=36.2

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCccc--ccCCC-CCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQ--VASTH-RPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~--~~~~~-~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      |+|+|+.++|||+|+|+|++..  |.  +.++. ...+..+++          ++..+.+.++||+|..
T Consensus         4 v~l~G~~g~GKTtl~~~~~~~~--~~~~~~~t~~~~~~~~~~~----------~~~~~~~~l~D~~g~~   60 (180)
T cd04137           4 IAVLGSRSVGKSSLTVQFVEGH--FVESYYPTIENTFSKIIRY----------KGQDYHLEIVDTAGQD   60 (180)
T ss_pred             EEEECCCCCCHHHHHHHHHhCC--CccccCcchhhhEEEEEEE----------CCEEEEEEEEECCChH
Confidence            6799999999999999999765  42  11221 112333332          2445778899999964

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>cd01859 MJ1464 MJ1464

Probab=96.10  E-value=0.021  Score=55.02  Aligned_cols=55  Identities=36%  Similarity=0.485  Sum_probs=35.7

Q ss_pred             EEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCC
Q 004698           72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI  138 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~  138 (736)
                      ..|.++|..++|||+|+|.|.+.. ...++++.. +|+.+-+-..       +   ..+.++||+|+
T Consensus       102 ~~~~~ig~~~~Gkssl~~~l~~~~-~~~~~~~~~-~t~~~~~~~~-------~---~~~~~~DtpGi  156 (156)
T cd01859         102 GKVGVVGYPNVGKSSIINALKGRH-SASTSPSPG-YTKGEQLVKI-------T---SKIYLLDTPGV  156 (156)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCC-ccccCCCCC-eeeeeEEEEc-------C---CCEEEEECcCC
Confidence            345999999999999999999753 234443332 3444322111       1   24788999995

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>cd04125 RabA_like RabA-like subfamily

Probab=96.09  E-value=0.011  Score=58.87  Aligned_cols=58  Identities=21%  Similarity=0.300  Sum_probs=38.8

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      |.|+|+.++|||+|+|+|.+..  |...   ...|.|.-.....+.   .+|..+.+-++||+|..
T Consensus         3 i~v~G~~~vGKSsli~~~~~~~--~~~~---~~~t~~~~~~~~~~~---~~~~~~~~~i~Dt~g~~   60 (188)
T cd04125           3 VVIIGDYGVGKSSLLKRFTEDE--FSES---TKSTIGVDFKIKTVY---IENKIIKLQIWDTNGQE   60 (188)
T ss_pred             EEEECCCCCCHHHHHHHHhcCC--CCCC---CCCceeeEEEEEEEE---ECCEEEEEEEEECCCcH
Confidence            7899999999999999999776  5321   123445322222221   24556788899999953

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=96.09  E-value=0.0089  Score=66.86  Aligned_cols=61  Identities=33%  Similarity=0.501  Sum_probs=41.0

Q ss_pred             CCEEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           69 EPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        69 ~~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      ..+. |+|+|++..|||.|||.|++...  .+-...-.+|+.+-=-.  +   .-+|  +.|.++||-|+-
T Consensus       216 ~G~k-vvIiG~PNvGKSSLLNaL~~~d~--AIVTdI~GTTRDviee~--i---~i~G--~pv~l~DTAGiR  276 (454)
T COG0486         216 EGLK-VVIIGRPNVGKSSLLNALLGRDR--AIVTDIAGTTRDVIEED--I---NLNG--IPVRLVDTAGIR  276 (454)
T ss_pred             cCce-EEEECCCCCcHHHHHHHHhcCCc--eEecCCCCCccceEEEE--E---EECC--EEEEEEecCCcc
Confidence            4565 78999999999999999999862  22223333455442211  1   1234  789999999984

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=96.08  E-value=0.0015  Score=79.92  Aligned_cols=172  Identities=19%  Similarity=0.289  Sum_probs=0.0

Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 004698          512 ERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDK---KKLADDYTSRINNLQGENISLREKSSSLSKTVD  588 (736)
Q Consensus       512 e~~~L~~k~es~e~e~~~lk~~Le~~e~~~~e~~k~~e~~In~l---kk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le  588 (736)
                      ++..|..+.+..+..+..+.......+..+.+.+..+++.....   ...+..++.++..|...++.-......|..++.
T Consensus       216 E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk~~leeEtr~k~~L~~~l~~le~e~~~L~eqleeE~e~k~~l~~qls  295 (859)
T PF01576_consen  216 ENSELTRQLEEAESQLSQLQREKSSLESQLEELKRQLEEETRAKQALEKQLRQLEHELEQLREQLEEEEEAKSELERQLS  295 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence            34444444444444333333333333333333333333333222   233344444444555555555556666667777


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHH----HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698          589 SLKNEISDWKRKYDQVLTKQKAMED----QVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAA  664 (736)
Q Consensus       589 ~lk~e~~e~~~~yee~~~~~~~~~~----~~~~~i~~L~~k~~~~E~~~~~~~~q~~~~~~E~~e~~~ky~~~~~e~kal  664 (736)
                      .+..++.+|+++|+..+...--..+    .+..++.+++..+..+...+..+.+....++.|+.|.....+.+.... +.
T Consensus       296 k~~~El~~~k~K~e~e~~~~~EelEeaKKkL~~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~-~~  374 (859)
T PF01576_consen  296 KLNAELEQWKKKYEEEAEQRTEELEEAKKKLERKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTSELEKAQAAA-AE  374 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence            7778999999999776555322222    455566677777777777777777777777777777776666665543 55


Q ss_pred             HHHHHHHHHHhhHHHHHHHH
Q 004698          665 LEKAAIVQERTSKEMQQRED  684 (736)
Q Consensus       665 le~~~~~~e~~~e~~~~~~~  684 (736)
                      |++....+++.+.+...+.+
T Consensus       375 LeKKqr~fDk~l~e~k~~~~  394 (859)
T PF01576_consen  375 LEKKQRKFDKQLAEWKAKVE  394 (859)
T ss_dssp             --------------------
T ss_pred             HHHHHHhHHHHHHHHHHHHH
Confidence            55555555544444444433

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=96.08  E-value=0.012  Score=59.39  Aligned_cols=58  Identities=26%  Similarity=0.232  Sum_probs=39.3

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCC
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI  138 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~  138 (736)
                      |.|+|+.++|||+|+|+|++..  |.-   ....|.|.-.....+..  .+|..+.+.|+||.|.
T Consensus         3 ivivG~~~vGKTsli~~l~~~~--~~~---~~~~t~~~d~~~~~v~~--~~~~~~~l~l~Dt~G~   60 (201)
T cd04107           3 VLVIGDLGVGKTSIIKRYVHGI--FSQ---HYKATIGVDFALKVIEW--DPNTVVRLQLWDIAGQ   60 (201)
T ss_pred             EEEECCCCCCHHHHHHHHHcCC--CCC---CCCCceeEEEEEEEEEE--CCCCEEEEEEEECCCc
Confidence            6799999999999999999764  432   12346665332221211  1256788999999995

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=96.07  E-value=0.01  Score=57.45  Aligned_cols=57  Identities=26%  Similarity=0.485  Sum_probs=35.9

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      |.|+|+.++|||+|++++++..  |. + ...+.+..+..+  ++   ..+|..+.+-++||+|..
T Consensus         2 i~vvG~~~~GKtsli~~~~~~~--~~-~-~~~~t~~~~~~~--~~---~~~~~~~~~~i~D~~g~~   58 (165)
T cd04146           2 IAVLGASGVGKSALVVRFLTKR--FI-G-EYDPNLESLYSR--QV---TIDGEQVSLEILDTAGQQ   58 (165)
T ss_pred             EEEECCCCCcHHHHHHHHHhCc--cc-c-ccCCChHHhceE--EE---EECCEEEEEEEEECCCCc
Confidence            7899999999999999998654  42 1 111222112111  11   124556788899999964

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd01889 SelB_euk SelB subfamily

Probab=96.07  E-value=0.013  Score=58.50  Aligned_cols=21  Identities=29%  Similarity=0.355  Sum_probs=19.6

Q ss_pred             EEeeCCCCCChhHHHHHHhCC
Q 004698           74 VSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~   94 (736)
                      |+|+|..++|||+|+|.|.+.
T Consensus         3 i~i~G~~~~GKstLi~~l~~~   23 (192)
T cd01889           3 VGVLGHVDSGKTSLAKALSEI   23 (192)
T ss_pred             EEEEecCCCCHHHHHHHHHhc
Confidence            789999999999999999974

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57

Probab=96.06  E-value=1.7  Score=42.95  Aligned_cols=63  Identities=16%  Similarity=0.290  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 004698          531 KKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNE  593 (736)
Q Consensus       531 k~~Le~~e~~~~e~~k~~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e  593 (736)
                      ...+...-+....|.+-.+...+.....-..+..+..++..++.+++.||+.|+++|+-.++=
T Consensus        24 e~nl~~LS~et~~yk~vl~~~~~~~~~~~~e~~~q~~dl~~qL~aAEtRCslLEKQLeyMRkm   86 (178)
T PF14073_consen   24 EDNLKQLSRETSHYKKVLQSEQNERERAHQELSKQNQDLSSQLSAAETRCSLLEKQLEYMRKM   86 (178)
T ss_pred             HHHHHHhhHHHHHhHHHHHHHhhhhhcccchhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444445555555555555555555556667899999999999999999998766543

>PRK10929 putative mechanosensitive channel protein; Provisional

Probab=96.06  E-value=4.5  Score=51.06  Aligned_cols=56  Identities=16%  Similarity=0.008  Sum_probs=30.9

Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698          614 QVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAA  669 (736)
Q Consensus       614 ~~~~~i~~L~~k~~~~E~~~~~~~~q~~~~~~E~~e~~~ky~~~~~e~kalle~~~  669 (736)
                      .++.+..-++.+....|..+.++....+.++......+.+++++..+...+.+..+
T Consensus       177 ~lqae~~~l~~~~~~l~~~l~s~~~~~~L~~~q~dl~~~~~~~l~~~~~~Lq~~in  232 (1109)
T PRK10929        177 ALQAESAALKALVDELELAQLSANNRQELARLRSELAKKRSQQLDAYLQALRNQLN  232 (1109)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444555555555555555555555555555555566666666665544444433

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=96.05  E-value=0.013  Score=58.23  Aligned_cols=54  Identities=19%  Similarity=0.228  Sum_probs=36.3

Q ss_pred             EEEEeeCCCCCChhHHHHHHhCCCCcccc-cCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           72 GVVSVCGRARQGKSFILNQLLGRSSGFQV-ASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~~~~~gF~~-~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      .-|.|+|+.++|||+|+|+|.+..  |.. .++..+ |.+...+           .++.+.++||+|..
T Consensus        18 ~~i~ivG~~~~GKTsli~~l~~~~--~~~~~~t~~~-~~~~~~~-----------~~~~~~~~D~~G~~   72 (184)
T smart00178       18 AKILFLGLDNAGKTTLLHMLKNDR--LAQHQPTQHP-TSEELAI-----------GNIKFTTFDLGGHQ   72 (184)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC--CcccCCcccc-ceEEEEE-----------CCEEEEEEECCCCH
Confidence            347899999999999999999864  432 223222 3333322           12678899999964

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=96.05  E-value=0.03  Score=63.31  Aligned_cols=60  Identities=30%  Similarity=0.476  Sum_probs=36.2

Q ss_pred             EEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698           72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA  140 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~  140 (736)
                      .-|+|+|..++|||+|+|.|+|... ..+++ ....|...  ...++.   .+|  ..+.|+||+|+..
T Consensus       173 ~~v~ivG~~~~GKSsLin~l~~~~~-~~~~~-~~gtt~~~--~~~~~~---~~~--~~~~liDT~G~~~  232 (429)
T TIGR03594       173 IKIAIIGRPNVGKSTLVNALLGEER-VIVSD-IAGTTRDS--IDIPFE---RNG--KKYLLIDTAGIRR  232 (429)
T ss_pred             eEEEEECCCCCCHHHHHHHHHCCCe-eecCC-CCCceECc--EeEEEE---ECC--cEEEEEECCCccc
Confidence            4589999999999999999998751 11111 11122211  111111   123  3588999999854

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=96.03  E-value=0.011  Score=67.44  Aligned_cols=61  Identities=30%  Similarity=0.443  Sum_probs=37.8

Q ss_pred             CCEEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           69 EPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        69 ~~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      .++. |+|+|++++|||+|+|.|++....| + +....+|.-+...  .+.   .+|  +.+.++||+|+.
T Consensus       202 ~g~k-VvIvG~~nvGKSSLiN~L~~~~~ai-v-s~~pgtTrd~~~~--~i~---~~g--~~v~l~DTaG~~  262 (442)
T TIGR00450       202 DGFK-LAIVGSPNVGKSSLLNALLKQDRAI-V-SDIKGTTRDVVEG--DFE---LNG--ILIKLLDTAGIR  262 (442)
T ss_pred             cCCE-EEEECCCCCcHHHHHHHHhCCCCcc-c-CCCCCcEEEEEEE--EEE---ECC--EEEEEeeCCCcc
Confidence            3443 7899999999999999999875222 1 2222334332211  111   123  467899999974

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>cd01870 RhoA_like RhoA-like subfamily

Probab=96.03  E-value=0.011  Score=57.74  Aligned_cols=57  Identities=21%  Similarity=0.346  Sum_probs=37.6

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      |.|+|+.++|||+|++++.+..  |.-  ...|++...+..  .+   ..+|..+.+.++||.|..
T Consensus         4 i~iiG~~~~GKTsl~~~~~~~~--~~~--~~~~t~~~~~~~--~~---~~~~~~~~l~i~Dt~G~~   60 (175)
T cd01870           4 LVIVGDGACGKTCLLIVFSKDQ--FPE--VYVPTVFENYVA--DI---EVDGKQVELALWDTAGQE   60 (175)
T ss_pred             EEEECCCCCCHHHHHHHHhcCC--CCC--CCCCccccceEE--EE---EECCEEEEEEEEeCCCch
Confidence            7899999999999999999865  532  112222222222  22   124566789999999964

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure

Probab=96.01  E-value=4.4  Score=47.20  Aligned_cols=108  Identities=17%  Similarity=0.317  Sum_probs=67.7

Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHhhHHHH
Q 004698          513 RSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSR--------------INNLQGENISLRE  578 (736)
Q Consensus       513 ~~~L~~k~es~e~e~~~lk~~Le~~e~~~~e~~k~~e~~In~lkk~~e~~e~~--------------~~~Le~k~~sl~~  578 (736)
                      ......+.......++.++..++..+.++.+|+.++...+....+.++.+...              ...|..+.+.+.+
T Consensus       209 ~~~~l~~~~e~~~~l~l~~~~~~~~~~el~~Yk~kA~~iLq~kEklI~~LK~~~~~~~~~~~~~~~el~~l~~E~~~~~e  288 (511)
T PF09787_consen  209 YIEYLRESGELQEQLELLKAEGESEEAELQQYKQKAQRILQSKEKLIESLKEGCLEEGFDSSTNSIELEELKQERDHLQE  288 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccccccccchhcchhhHHHHHHHHH
Confidence            34455567778889999999999999999999977777777776666666661              3345555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 004698          579 KSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIE  620 (736)
Q Consensus       579 r~~~L~~~le~lk~e~~e~~~~yee~~~~~~~~~~~~~~~i~  620 (736)
                      .+..|..+++.++.+..+............+.....++..+.
T Consensus       289 e~~~l~~Qi~~l~~e~~d~e~~~~~~~~~~~~~~~~~~~~~~  330 (511)
T PF09787_consen  289 EIQLLERQIEQLRAELQDLEAQLEGEQESFREQPQELSQQLE  330 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            555555555555555555555544433333333333333333

They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].

>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein

Probab=96.00  E-value=1.4  Score=50.64  Aligned_cols=22  Identities=18%  Similarity=0.203  Sum_probs=9.4

Q ss_pred             HHHHHHHhhhHHHHHHHHHHHH
Q 004698          513 RSSLMLKYRSIEDNMKLLKKQL  534 (736)
Q Consensus       513 ~~~L~~k~es~e~e~~~lk~~L  534 (736)
                      ...++.+...++.....+...+
T Consensus        99 ~~~~~~~~~~~~~~~~rL~a~~  120 (457)
T TIGR01000        99 KQLLEQQLDNLKDQKKSLDTLK  120 (457)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444444333

This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=96.00  E-value=0.01  Score=67.67  Aligned_cols=58  Identities=36%  Similarity=0.493  Sum_probs=36.5

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      .|+|+|.+++|||+|+|.|+|....+ ++ .....|..+.....     ..+|  ..+.++||+|+.
T Consensus       217 kV~ivG~~nvGKSSLln~L~~~~~a~-v~-~~~gtT~d~~~~~i-----~~~g--~~i~l~DT~G~~  274 (449)
T PRK05291        217 KVVIAGRPNVGKSSLLNALLGEERAI-VT-DIAGTTRDVIEEHI-----NLDG--IPLRLIDTAGIR  274 (449)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCcc-cC-CCCCcccccEEEEE-----EECC--eEEEEEeCCCCC
Confidence            58999999999999999999875222 11 12223333222111     1123  457899999974

>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57

Probab=95.99  E-value=1.1  Score=44.41  Aligned_cols=91  Identities=22%  Similarity=0.299  Sum_probs=52.0

Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH--
Q 004698          614 QVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFS--  691 (736)
Q Consensus       614 ~~~~~i~~L~~k~~~~E~~~~~~~~q~~~~~~E~~e~~~ky~~~~~e~kalle~~~~~~e~~~e~~~~~~~~l~~e~~--  691 (736)
                      ++..++....+||+-+|-.+.-+++.+.++..|=        ..+.+..+.+++........+...-.+++.|+.+..  
T Consensus        61 dl~~qL~aAEtRCslLEKQLeyMRkmv~~ae~er--------~~~le~q~~l~~e~~~~~~~~~~klekLe~LE~E~~rL  132 (178)
T PF14073_consen   61 DLSSQLSAAETRCSLLEKQLEYMRKMVESAEKER--------NAVLEQQVSLQRERQQDQSELQAKLEKLEKLEKEYLRL  132 (178)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------hHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHH
Confidence            4555555555555555555555555555555551        122222233333333333455666677888886654  


Q ss_pred             -hhHHHHHHHHHHHHHHHHHHH
Q 004698          692 -STLAEKEEEMKEKATKIEHAE  712 (736)
Q Consensus       692 -~~~~e~~~~~~~~~~k~~~~~  712 (736)
                       ....-++.+|+++-.|+..-+
T Consensus       133 t~~Q~~ae~Ki~~LE~KL~eEe  154 (178)
T PF14073_consen  133 TATQSLAETKIKELEEKLQEEE  154 (178)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence             445567777899888887655

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=95.99  E-value=1.9  Score=42.97  Aligned_cols=116  Identities=17%  Similarity=0.239  Sum_probs=74.3

Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 004698          513 RSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYL------KRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKT  586 (736)
Q Consensus       513 ~~~L~~k~es~e~e~~~lk~~Le~~e~~~~e~~------k~~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~  586 (736)
                      ...|+..++.+++.-..+...+....+.+...+      +..++++.+++.....++.+...|-.+...++..-+.|...
T Consensus        24 n~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~  103 (193)
T PF14662_consen   24 NAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKAKALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAE  103 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444555555554444444443333333322222      45688888999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHH
Q 004698          587 VDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEAR  632 (736)
Q Consensus       587 le~lk~e~~e~~~~yee~~~~~~~~~~~~~~~i~~L~~k~~~~E~~  632 (736)
                      ++.+..+...+....+..    ++...++..+.+.|+.++...|..
T Consensus       104 i~~Lqeen~kl~~e~~~l----k~~~~eL~~~~~~Lq~Ql~~~e~l  145 (193)
T PF14662_consen  104 IETLQEENGKLLAERDGL----KKRSKELATEKATLQRQLCEFESL  145 (193)
T ss_pred             HHHHHHHHhHHHHhhhhH----HHHHHHHHHhhHHHHHHHHHHHHH
Confidence            888887776666555432    333445555556666655554444

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=95.99  E-value=0.013  Score=55.79  Aligned_cols=56  Identities=23%  Similarity=0.267  Sum_probs=34.7

Q ss_pred             eeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCccc
Q 004698           76 VCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAY  141 (736)
Q Consensus        76 v~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~  141 (736)
                      |+|..++|||+|+|.|.|..  |.++.. ..+|.......  +.   -+|  ..+.++||+|+...
T Consensus         1 l~G~~~~GKssl~~~~~~~~--~~~~~~-~~~t~~~~~~~--~~---~~~--~~~~liDtpG~~~~   56 (158)
T cd01879           1 LVGNPNVGKTTLFNALTGAR--QKVGNW-PGVTVEKKEGR--FK---LGG--KEIEIVDLPGTYSL   56 (158)
T ss_pred             CCCCCCCCHHHHHHHHhcCc--ccccCC-CCcccccceEE--Ee---eCC--eEEEEEECCCcccc
Confidence            68999999999999999874  443321 12233222111  10   012  46889999998643

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=95.97  E-value=1.5  Score=52.47  Aligned_cols=102  Identities=14%  Similarity=0.138  Sum_probs=57.3

Q ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 004698          568 NLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEV  647 (736)
Q Consensus       568 ~Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~yee~~~~~~~~~~~~~~~i~~L~~k~~~~E~~~~~~~~q~~~~~~E~  647 (736)
                      .|+.++..+..++..|...|..++.+.......|.+.....+.+...+..++..+...++.-++++..++..+..+..-+
T Consensus       356 iLe~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~~~~~ek~~~~~e~q~L~ekl~~lek~~re~qeri~~LE~ELr~l~~~A  435 (717)
T PF09730_consen  356 ILECKYKVAVSEVIQLKAELKALKSKYNELEERYKQEKDRLESEVQNLKEKLMSLEKSSREDQERISELEKELRALSKLA  435 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence            35566666677777777777777776666666666655555555555555555554444444445555555555555554


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 004698          648 EEWKRKYGVAVREAKAALEKAA  669 (736)
Q Consensus       648 ~e~~~ky~~~~~e~kalle~~~  669 (736)
                      .|-..+...+..+.-+.-+..+
T Consensus       436 ~E~q~~LnsAQDELvtfSEeLA  457 (717)
T PF09730_consen  436 GESQGSLNSAQDELVTFSEELA  457 (717)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444444444444444

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>cd04135 Tc10 TC10 subfamily

Probab=95.97  E-value=0.013  Score=56.99  Aligned_cols=59  Identities=24%  Similarity=0.383  Sum_probs=37.9

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCccc
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAY  141 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~  141 (736)
                      |.|+|+.++|||+|+|++.+..  |.-.  ..|.+...|.-  .+.   .++..+.+-++||+|.+..
T Consensus         3 i~i~G~~~~GKTsl~~~~~~~~--~~~~--~~~t~~~~~~~--~~~---~~~~~~~~~i~Dt~G~~~~   61 (174)
T cd04135           3 CVVVGDGAVGKTCLLMSYANDA--FPEE--YVPTVFDHYAV--SVT---VGGKQYLLGLYDTAGQEDY   61 (174)
T ss_pred             EEEECCCCCCHHHHHHHHHhCC--CCCC--CCCceeeeeEE--EEE---ECCEEEEEEEEeCCCcccc
Confidence            6899999999999999999765  5321  12222223322  221   2355567789999996543

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>PRK01156 chromosome segregation protein; Provisional

Probab=95.96  E-value=6.7  Score=48.92  Aligned_cols=17  Identities=12%  Similarity=0.350  Sum_probs=6.9

Q ss_pred             HHHHHHHHHHHHHHHHh
Q 004698          700 EMKEKATKIEHAEQCLT  716 (736)
Q Consensus       700 ~~~~~~~k~~~~~~~~~  716 (736)
                      +++++..++....+.+.
T Consensus       417 ~~~~l~~~i~~l~~~i~  433 (895)
T PRK01156        417 KLQDISSKVSSLNQRIR  433 (895)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            34444444444443333

>cd01893 Miro1 Miro1 subfamily

Probab=95.95  E-value=0.014  Score=56.63  Aligned_cols=54  Identities=15%  Similarity=0.143  Sum_probs=35.3

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCccccc--CCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVA--STHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~--~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      |.|+|..++|||+|+|+|.+..  |.-.  ++....|..+.+          ++..+.+.++||+|.+
T Consensus         3 v~ivG~~~vGKTsl~~~l~~~~--~~~~~~~~~~~~~~~~~~----------~~~~~~~~i~Dt~G~~   58 (166)
T cd01893           3 IVLIGDEGVGKSSLIMSLVSEE--FPENVPRVLPEITIPADV----------TPERVPTTIVDTSSRP   58 (166)
T ss_pred             EEEECCCCCCHHHHHHHHHhCc--CCccCCCcccceEeeeee----------cCCeEEEEEEeCCCch
Confidence            6789999999999999998764  4211  111111222211          3456789999999964

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=95.94  E-value=0.012  Score=64.63  Aligned_cols=57  Identities=19%  Similarity=0.229  Sum_probs=39.2

Q ss_pred             EEEEEeeCCCCCChhHHHHHHhCCCCcccccC---CCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVAS---THRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        71 v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~---~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      ++=|+++|.+.+|||+|||.|.+..  ..+++   |+...+.|+..|.        ++  ..+++.||+|+.
T Consensus       158 ~adVglVG~PNaGKSTLln~ls~a~--~~va~ypfTT~~p~~G~v~~~--------~~--~~~~i~D~PGli  217 (335)
T PRK12299        158 LADVGLVGLPNAGKSTLISAVSAAK--PKIADYPFTTLHPNLGVVRVD--------DY--KSFVIADIPGLI  217 (335)
T ss_pred             cCCEEEEcCCCCCHHHHHHHHHcCC--CccCCCCCceeCceEEEEEeC--------CC--cEEEEEeCCCcc
Confidence            5569999999999999999999753  22222   2222345666552        12  458899999983

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=95.94  E-value=0.016  Score=55.47  Aligned_cols=54  Identities=22%  Similarity=0.174  Sum_probs=35.8

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      |.|+|+.++|||+|+|+|.+..  |.-   . ..|.|+-.....      .+..+.+.++||+|..
T Consensus         2 i~i~G~~~~GKTsl~~~~~~~~--~~~---~-~~t~~~~~~~~~------~~~~~~l~i~D~~G~~   55 (160)
T cd04156           2 VLLLGLDSAGKSTLLYKLKHAE--LVT---T-IPTVGFNVEMLQ------LEKHLSLTVWDVGGQE   55 (160)
T ss_pred             EEEEcCCCCCHHHHHHHHhcCC--ccc---c-cCccCcceEEEE------eCCceEEEEEECCCCH
Confidence            6789999999999999999875  421   1 224443221111      1234789999999964

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>COG1162 Predicted GTPases [General function prediction only]

Probab=95.93  E-value=0.0072  Score=64.47  Aligned_cols=58  Identities=24%  Similarity=0.402  Sum_probs=36.2

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCCCcccccC-----CC-CCccceEEeeccccccccCCCCceEEEEeecCCCccc
Q 004698           73 VVSVCGRARQGKSFILNQLLGRSSGFQVAS-----TH-RPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAY  141 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~-----~~-~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~  141 (736)
                      +..++|..|.|||+|+|+|++.. ...++.     +. +-+|.-.=|..-|.     +|     +++|||||.++
T Consensus       166 ~svl~GqSGVGKSSLiN~L~p~~-~~~t~eIS~~~~rGkHTTt~~~l~~l~~-----gG-----~iiDTPGf~~~  229 (301)
T COG1162         166 ITVLLGQSGVGKSTLINALLPEL-NQKTGEISEKLGRGRHTTTHVELFPLPG-----GG-----WIIDTPGFRSL  229 (301)
T ss_pred             eEEEECCCCCcHHHHHHhhCchh-hhhhhhhcccCCCCCCccceEEEEEcCC-----CC-----EEEeCCCCCcc
Confidence            45589999999999999999742 122221     11 12345555554331     23     67899998644

>PRK03003 GTP-binding protein Der; Reviewed

Probab=95.91  E-value=0.048  Score=62.73  Aligned_cols=56  Identities=27%  Similarity=0.346  Sum_probs=36.4

Q ss_pred             EEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccc----eEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTK----GLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        71 v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~----Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      ..-|+|+|..++|||+|+|.|+|..  +...+.....|.    +.|.+         +|  ..+.|+||+|+.
T Consensus       211 ~~kI~iiG~~nvGKSSLin~l~~~~--~~~~s~~~gtT~d~~~~~~~~---------~~--~~~~l~DTaG~~  270 (472)
T PRK03003        211 PRRVALVGKPNVGKSSLLNKLAGEE--RSVVDDVAGTTVDPVDSLIEL---------GG--KTWRFVDTAGLR  270 (472)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCC--cccccCCCCccCCcceEEEEE---------CC--EEEEEEECCCcc
Confidence            3568999999999999999999875  222122222222    22322         23  346789999974

>PTZ00258 GTP-binding protein; Provisional

Probab=95.91  E-value=0.011  Score=65.87  Aligned_cols=67  Identities=16%  Similarity=0.051  Sum_probs=39.9

Q ss_pred             CEEEEEeeCCCCCChhHHHHHHhCCCCccccc----CCCCCccceEEeeccccc-----cccCC-CCceEEEEeecCCCc
Q 004698           70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVA----STHRPCTKGLWLWSAPLK-----RTALD-GTEYNLLLLDSEGID  139 (736)
Q Consensus        70 ~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~----~~~~~~T~Giw~w~~p~~-----~~~~~-g~~~~v~llDteG~~  139 (736)
                      ...-|+|+|.+.+|||+|+|.|.+..  -.++    .|..| ..|+..|..+-.     ...|. -....+.|+||+|+-
T Consensus        20 ~~~kvgIVG~PNvGKSTLfnaLt~~~--~~v~n~pftTi~p-~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv   96 (390)
T PTZ00258         20 NNLKMGIVGLPNVGKSTTFNALCKQQ--VPAENFPFCTIDP-NTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLV   96 (390)
T ss_pred             CCcEEEEECCCCCChHHHHHHHhcCc--ccccCCCCCcccc-eEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcC
Confidence            33359999999999999999997764  1222    22233 447765542110     00000 012348999999984

>cd04117 Rab15 Rab15 subfamily

Probab=95.90  E-value=0.014  Score=56.61  Aligned_cols=58  Identities=19%  Similarity=0.366  Sum_probs=39.2

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      |.|+|+.++|||+|++++++..  |...+   ..|.|+-....++.   .+|..+.+-+.||.|..
T Consensus         3 i~vvG~~~~GKTsli~~~~~~~--~~~~~---~~t~~~~~~~~~~~---~~~~~~~l~i~D~~g~~   60 (161)
T cd04117           3 LLLIGDSGVGKTCLLCRFTDNE--FHSSH---ISTIGVDFKMKTIE---VDGIKVRIQIWDTAGQE   60 (161)
T ss_pred             EEEECcCCCCHHHHHHHHhcCC--CCCCC---CCceeeEEEEEEEE---ECCEEEEEEEEeCCCcH
Confidence            7899999999999999999765  64322   23555433222222   13556788899999853

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>cd04114 Rab30 Rab30 subfamily

Probab=95.90  E-value=0.017  Score=55.81  Aligned_cols=63  Identities=17%  Similarity=0.298  Sum_probs=39.3

Q ss_pred             CCEEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           69 EPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        69 ~~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      .+..-|.|+|+.++|||+|++.|.+..  |.-+.   ..|.|+-.-...+   ..+|..+.+.++||+|..
T Consensus         5 ~~~~~v~v~G~~~~GKSsli~~l~~~~--~~~~~---~~t~~~~~~~~~~---~~~~~~~~~~~~D~~g~~   67 (169)
T cd04114           5 DFLFKIVLIGNAGVGKTCLVRRFTQGL--FPPGQ---GATIGVDFMIKTV---EIKGEKIKLQIWDTAGQE   67 (169)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHhCC--CCCCC---CCceeeEEEEEEE---EECCEEEEEEEEECCCcH
Confidence            356789999999999999999998643  32221   1233321111111   123555778899999953

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04140 ARHI_like ARHI subfamily

Probab=95.88  E-value=0.016  Score=56.11  Aligned_cols=57  Identities=19%  Similarity=0.287  Sum_probs=36.0

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      |+|+|..++|||+|+|++++..  |...  ..|.+.....  ..+   ..++..+.+.+.||+|..
T Consensus         4 v~~vG~~~vGKTsli~~~~~~~--f~~~--~~~t~~~~~~--~~~---~~~~~~~~l~i~Dt~G~~   60 (165)
T cd04140           4 VVVFGAGGVGKSSLVLRFVKGT--FRES--YIPTIEDTYR--QVI---SCSKNICTLQITDTTGSH   60 (165)
T ss_pred             EEEECCCCCCHHHHHHHHHhCC--CCCC--cCCcchheEE--EEE---EECCEEEEEEEEECCCCC
Confidence            7899999999999999999765  5322  1122111111  111   112345778899999964

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=95.88  E-value=0.012  Score=57.33  Aligned_cols=57  Identities=25%  Similarity=0.282  Sum_probs=37.0

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      |.|+|+.++|||+|+|++.+..  |....  .+ |.+--... .+   .-+|..+.+.++||+|..
T Consensus         1 i~i~G~~~vGKTsli~~~~~~~--~~~~~--~~-~~~~~~~~-~~---~~~~~~~~~~i~Dt~G~~   57 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYTTNA--FPEDY--VP-TVFENYSA-DV---EVDGKPVELGLWDTAGQE   57 (174)
T ss_pred             CEEECCCCCCHHHHHHHHHhCC--CCCCC--CC-cEEeeeeE-EE---EECCEEEEEEEEECCCCc
Confidence            5799999999999999999865  53221  12 22221111 11   124566789999999964

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>PRK03003 GTP-binding protein Der; Reviewed

Probab=95.88  E-value=0.017  Score=66.39  Aligned_cols=77  Identities=30%  Similarity=0.513  Sum_probs=45.4

Q ss_pred             eeeCHHHHHHhhccC-CCEEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEE
Q 004698           54 FRMDPEAVAALQLVK-EPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLL  132 (736)
Q Consensus        54 l~l~~eAl~~L~~i~-~~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~l  132 (736)
                      ..++.+-+..|...+ .+...|+|+|..++|||+|+|+|+|... +.+.+. ...|...-.+..     ..+|  ..+.|
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~~V~IvG~~nvGKSSL~nrl~~~~~-~~v~~~-~gvT~d~~~~~~-----~~~~--~~~~l   90 (472)
T PRK03003         20 WELDDEDLAELEAAEGGPLPVVAVVGRPNVGKSTLVNRILGRRE-AVVEDV-PGVTRDRVSYDA-----EWNG--RRFTV   90 (472)
T ss_pred             cccchhhHHhhhcccCCCCCEEEEEcCCCCCHHHHHHHHhCcCc-ccccCC-CCCCEeeEEEEE-----EECC--cEEEE
Confidence            556666665555222 3445799999999999999999998641 222221 112222111110     0123  35788


Q ss_pred             eecCCCc
Q 004698          133 LDSEGID  139 (736)
Q Consensus       133 lDteG~~  139 (736)
                      +||+|+.
T Consensus        91 ~DT~G~~   97 (472)
T PRK03003         91 VDTGGWE   97 (472)
T ss_pred             EeCCCcC
Confidence            9999975

>cd04175 Rap1 Rap1 subgroup

Probab=95.87  E-value=0.029  Score=54.10  Aligned_cols=57  Identities=25%  Similarity=0.376  Sum_probs=35.6

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      |.|+|..++|||+|+|+++...  |.  +...|.+......  .+.   .+|..+.+-++||+|..
T Consensus         4 i~~~G~~~~GKTsli~~~~~~~--~~--~~~~~t~~~~~~~--~~~---~~~~~~~l~i~Dt~G~~   60 (164)
T cd04175           4 LVVLGSGGVGKSALTVQFVQGI--FV--EKYDPTIEDSYRK--QVE---VDGQQCMLEILDTAGTE   60 (164)
T ss_pred             EEEECCCCCCHHHHHHHHHhCC--CC--cccCCcchheEEE--EEE---ECCEEEEEEEEECCCcc
Confidence            7899999999999999998543  42  1122322222111  111   13556778899999964

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>PRK00093 GTP-binding protein Der; Reviewed

Probab=95.85  E-value=0.043  Score=62.28  Aligned_cols=57  Identities=30%  Similarity=0.433  Sum_probs=36.8

Q ss_pred             EEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccc----eEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698           71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTK----GLWLWSAPLKRTALDGTEYNLLLLDSEGIDA  140 (736)
Q Consensus        71 v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~----Giw~w~~p~~~~~~~g~~~~v~llDteG~~~  140 (736)
                      ..-|+|+|..++|||+|+|.|+|... +.+++. ...|.    ..|.|         +|  ..+.|+||+|+..
T Consensus       173 ~~~v~ivG~~n~GKStlin~ll~~~~-~~~~~~-~gtt~~~~~~~~~~---------~~--~~~~lvDT~G~~~  233 (435)
T PRK00093        173 PIKIAIIGRPNVGKSSLINALLGEER-VIVSDI-AGTTRDSIDTPFER---------DG--QKYTLIDTAGIRR  233 (435)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCCc-eeecCC-CCceEEEEEEEEEE---------CC--eeEEEEECCCCCC
Confidence            35699999999999999999998752 222221 11221    22222         23  4578899999753

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=95.85  E-value=0.018  Score=56.59  Aligned_cols=56  Identities=23%  Similarity=0.180  Sum_probs=36.2

Q ss_pred             EEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        71 v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      ..-|.++|+.++|||+|+|+|.+..  |. +.   ..|.|.-+.  .+.     ...+.+.++||+|..
T Consensus        15 ~~kv~~~G~~~~GKTsl~~~l~~~~--~~-~~---~~t~~~~~~--~~~-----~~~~~~~l~D~~G~~   70 (174)
T cd04153          15 EYKVIIVGLDNAGKTTILYQFLLGE--VV-HT---SPTIGSNVE--EIV-----YKNIRFLMWDIGGQE   70 (174)
T ss_pred             ccEEEEECCCCCCHHHHHHHHccCC--CC-Cc---CCccccceE--EEE-----ECCeEEEEEECCCCH
Confidence            3457899999999999999998654  32 11   223333221  111     123679999999964

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=95.85  E-value=5.6  Score=47.06  Aligned_cols=45  Identities=13%  Similarity=0.147  Sum_probs=25.2

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698          559 ADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQ  603 (736)
Q Consensus       559 ~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~yee  603 (736)
                      +.+.+..+..|+.-+++...++..|..+-+..+..+.+--+..+.
T Consensus       389 L~d~e~ni~kL~~~v~~s~~rl~~L~~qWe~~R~pL~~e~r~lk~  433 (594)
T PF05667_consen  389 LPDAEENIAKLQALVEASEQRLVELAQQWEKHRAPLIEEYRRLKE  433 (594)
T ss_pred             hcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            344455556666666666666666666666655444443333333

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=95.84  E-value=6.1  Score=47.44  Aligned_cols=107  Identities=22%  Similarity=0.219  Sum_probs=76.4

Q ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH-----------HHHHHHHHHHHHHH------H
Q 004698          612 EDQVCSEIEVLKSRSTAAEARLAAAREQALSAQE----EVEEWKRKYG-----------VAVREAKAALEKAA------I  670 (736)
Q Consensus       612 ~~~~~~~i~~L~~k~~~~E~~~~~~~~q~~~~~~----E~~e~~~ky~-----------~~~~e~kalle~~~------~  670 (736)
                      .+.+..+|--|++-+++=-+.++++|--+.+.|.    =++-+|+||+           .+.+|.|++-|.|+      .
T Consensus       585 ~e~l~eqilKLKSLLSTKREQIaTLRTVLKANKqTAEvALanLKsKYE~EK~~v~etm~kLRnELK~LKEDAATFsSlRa  664 (717)
T PF09730_consen  585 KEELQEQILKLKSLLSTKREQIATLRTVLKANKQTAEVALANLKSKYENEKAMVSETMMKLRNELKALKEDAATFSSLRA  664 (717)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455556666776665555555555544444333    2567899997           47889999999999      6


Q ss_pred             HHHHhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHh
Q 004698          671 VQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLEL  722 (736)
Q Consensus       671 ~~e~~~e~~~~~~~~l~~e~~~~~~e~~~~~~~~~~k~~~~~~~~~~~~~~l  722 (736)
                      .+..+|++...+++.+..+++.+-+|+    |-++.=|+-++++-=.|.-+|
T Consensus       665 mFa~RCdEYvtQldemqrqL~aAEdEK----KTLNsLLRmAIQQKLaLTQRL  712 (717)
T PF09730_consen  665 MFAARCDEYVTQLDEMQRQLAAAEDEK----KTLNSLLRMAIQQKLALTQRL  712 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence            677999999999999999999998887    788888888876543333333

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]

Probab=95.83  E-value=0.21  Score=58.20  Aligned_cols=25  Identities=32%  Similarity=0.469  Sum_probs=21.8

Q ss_pred             CCEEEEEeeCCCCCChhHHHHHHhC
Q 004698           69 EPIGVVSVCGRARQGKSFILNQLLG   93 (736)
Q Consensus        69 ~~v~vVsv~G~~rtGKS~LlN~l~~   93 (736)
                      ....-|.|.|...+|||++.|.++-
T Consensus       107 r~~mKV~ifGrts~GKSt~iNAmL~  131 (749)
T KOG0448|consen  107 RRHMKVAIFGRTSAGKSTVINAMLH  131 (749)
T ss_pred             hcccEEEEeCCCCCcHHHHHHHHHH
Confidence            4556799999999999999999883

>cd04157 Arl6 Arl6 subfamily

Probab=95.81  E-value=0.02  Score=54.73  Aligned_cols=55  Identities=25%  Similarity=0.262  Sum_probs=34.5

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      |.|+|+.++|||+|+|+|.+..  |.... . ..|.|+-...  +     .+..+.+.++||+|..
T Consensus         2 i~~vG~~~~GKTsl~~~l~~~~--~~~~~-~-~~t~g~~~~~--~-----~~~~~~~~l~Dt~G~~   56 (162)
T cd04157           2 ILVVGLDNSGKTTIINQLKPEN--AQSQI-I-VPTVGFNVES--F-----EKGNLSFTAFDMSGQG   56 (162)
T ss_pred             EEEECCCCCCHHHHHHHHcccC--CCcce-e-cCccccceEE--E-----EECCEEEEEEECCCCH
Confidence            6789999999999999999753  21111 1 1234431111  0     0124678899999953

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>PLN03110 Rab GTPase; Provisional

Probab=95.79  E-value=0.016  Score=59.43  Aligned_cols=60  Identities=22%  Similarity=0.309  Sum_probs=42.3

Q ss_pred             EEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCC
Q 004698           71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI  138 (736)
Q Consensus        71 v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~  138 (736)
                      ..=|.|+|+.++|||+|+++|.+..  |...   ...|.|+-.+...+..   +|..+.+.|+||.|.
T Consensus        12 ~~Ki~ivG~~~vGKStLi~~l~~~~--~~~~---~~~t~g~~~~~~~v~~---~~~~~~l~l~Dt~G~   71 (216)
T PLN03110         12 LFKIVLIGDSGVGKSNILSRFTRNE--FCLE---SKSTIGVEFATRTLQV---EGKTVKAQIWDTAGQ   71 (216)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcCC--CCCC---CCCceeEEEEEEEEEE---CCEEEEEEEEECCCc
Confidence            3348899999999999999999865  5432   2346666544433322   355678899999994

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=95.79  E-value=0.012  Score=56.74  Aligned_cols=59  Identities=24%  Similarity=0.271  Sum_probs=35.0

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCccc-ccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQ-VASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~-~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      |.|+|+.++|||+|+|+|.+...... .....-..|.|+-.....+     +  +..+.++||+|..
T Consensus         2 i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~-----~--~~~~~l~Dt~G~~   61 (167)
T cd04160           2 VLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEV-----G--NARLKFWDLGGQE   61 (167)
T ss_pred             EEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEE-----C--CEEEEEEECCCCh
Confidence            67899999999999999987431100 0011112233433322111     1  3678999999964

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>cd04176 Rap2 Rap2 subgroup

Probab=95.77  E-value=0.018  Score=55.37  Aligned_cols=57  Identities=25%  Similarity=0.374  Sum_probs=37.0

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      |.|+|..++|||+|++++++..  |.-  ...|.+.......  +   ..+|..+.+-|+||+|..
T Consensus         4 i~i~G~~~vGKTsl~~~~~~~~--~~~--~~~~t~~~~~~~~--~---~~~~~~~~l~i~Dt~G~~   60 (163)
T cd04176           4 VVVLGSGGVGKSALTVQFVSGT--FIE--KYDPTIEDFYRKE--I---EVDSSPSVLEILDTAGTE   60 (163)
T ss_pred             EEEECCCCCCHHHHHHHHHcCC--CCC--CCCCchhheEEEE--E---EECCEEEEEEEEECCCcc
Confidence            7899999999999999998754  432  2223222232221  1   124556778899999964

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=95.73  E-value=0.039  Score=58.46  Aligned_cols=22  Identities=23%  Similarity=0.452  Sum_probs=19.7

Q ss_pred             EEeeCCCCCChhHHHHHHhCCC
Q 004698           74 VSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      |+|+|..++|||+|+|+|++..
T Consensus         2 i~ivG~~gsGKStL~~~Ll~~~   23 (268)
T cd04170           2 IALVGHSGSGKTTLAEALLYAT   23 (268)
T ss_pred             EEEECCCCCCHHHHHHHHHHhc
Confidence            7899999999999999998643

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>cd01884 EF_Tu EF-Tu subfamily

Probab=95.73  E-value=0.03  Score=56.65  Aligned_cols=99  Identities=13%  Similarity=0.177  Sum_probs=52.6

Q ss_pred             EEEEeeCCCCCChhHHHHHHhCCC--------CcccccC-CCCCccceEEeeccccccccCCCCceEEEEeecCCCcccC
Q 004698           72 GVVSVCGRARQGKSFILNQLLGRS--------SGFQVAS-THRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYD  142 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~~~~--------~gF~~~~-~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~~  142 (736)
                      .-|+|+|...+|||+|+++|++..        .++.+.. ......+|+=+-.......   ..+..+.|+||+|...+ 
T Consensus         3 ~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~---~~~~~i~~iDtPG~~~~-   78 (195)
T cd01884           3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYE---TANRHYAHVDCPGHADY-   78 (195)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEec---CCCeEEEEEECcCHHHH-
Confidence            349999999999999999998642        1111110 0111133443333222211   12356889999996321 


Q ss_pred             CCCccchHHHHHhhhccceEEEccCCCCchHHhhhh
Q 004698          143 QTGTYSTQIFSLAVLLSSMFIYNQMGGIDESAIDRL  178 (736)
Q Consensus       143 ~~~~~d~~IFaLa~LLSS~~IyN~~g~i~e~~l~~L  178 (736)
                          ....+.+++..=.-++|......+.......+
T Consensus        79 ----~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~  110 (195)
T cd01884          79 ----IKNMITGAAQMDGAILVVSATDGPMPQTREHL  110 (195)
T ss_pred             ----HHHHHHHhhhCCEEEEEEECCCCCcHHHHHHH
Confidence                12335555543334556665555555444433

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>cd04132 Rho4_like Rho4-like subfamily

Probab=95.72  E-value=0.019  Score=56.74  Aligned_cols=58  Identities=21%  Similarity=0.180  Sum_probs=38.4

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      |.|+|+.++|||+|+|+|++..  |.-.   ...|.|.-.... +  ..++|..+.+.+.||+|..
T Consensus         3 i~vvG~~~vGKTsli~~l~~~~--~~~~---~~~t~~~~~~~~-i--~~~~~~~~~l~i~Dt~G~~   60 (187)
T cd04132           3 IVVVGDGGCGKTCLLIVYSQGK--FPEE---YVPTVFENYVTN-I--QGPNGKIIELALWDTAGQE   60 (187)
T ss_pred             EEEECCCCCCHHHHHHHHHhCc--CCCC---CCCeeeeeeEEE-E--EecCCcEEEEEEEECCCch
Confidence            7899999999999999999765  5321   122333322211 1  1233667889999999953

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein

Probab=95.69  E-value=1.1  Score=51.38  Aligned_cols=27  Identities=15%  Similarity=0.138  Sum_probs=16.3

Q ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 004698          514 SSLMLKYRSIEDNMKLLKKQLEDSERY  540 (736)
Q Consensus       514 ~~L~~k~es~e~e~~~lk~~Le~~e~~  540 (736)
                      ..++++...++..+..++.++...+..
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~rL~a~  119 (457)
T TIGR01000        93 GNEENQKQLLEQQLDNLKDQKKSLDTL  119 (457)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455666666766666666666554443

This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants

Probab=95.69  E-value=3.5  Score=49.92  Aligned_cols=155  Identities=17%  Similarity=0.197  Sum_probs=93.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 004698          523 IEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKY-  601 (736)
Q Consensus       523 ~e~e~~~lk~~Le~~e~~~~e~~k~~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~y-  601 (736)
                      +++.+..+...|++..+.+.-.+.-.+.-|.      +.+......+++-...++.++..+.+++..+..|...+.+.. 
T Consensus        43 ~e~r~~hld~aLkec~~qlr~~ree~eq~i~------~~~~~~s~e~e~~~~~le~~l~e~~~~l~~~~~e~~~l~~~l~  116 (769)
T PF05911_consen   43 LEDRVSHLDGALKECMRQLRQVREEQEQKIH------EAVAKKSKEWEKIKSELEAKLAELSKRLAESAAENSALSKALQ  116 (769)
T ss_pred             HHHHhhhhhHHHHHHHHHHHHhhHHHHHHHH------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            4555566666666666655554444444444      334444455666666667777777777777777777776655 


Q ss_pred             --HHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHH-
Q 004698          602 --DQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAA-----IVQE-  673 (736)
Q Consensus       602 --ee~~~~~~~~~~~~~~~i~~L~~k~~~~E~~~~~~~~q~~~~~~E~~e~~~ky~~~~~e~kalle~~~-----~~~e-  673 (736)
                        +..+...+.....+..++..|+.|+..+|-.+++++-++....+|+        .+..+.|..--+++     .+.| 
T Consensus       117 ~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~kel--------eir~~E~~~~~~~ae~a~kqhle~  188 (769)
T PF05911_consen  117 EKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKEL--------EIRNEEREYSRRAAEAASKQHLES  188 (769)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHhHHHHHHHHHHHHHH
Confidence              4455556666667777888888888888888888888888777775        22222223323333     2233 


Q ss_pred             -HhhHHHHHHHHHHHHHHH
Q 004698          674 -RTSKEMQQREDVLREEFS  691 (736)
Q Consensus       674 -~~~e~~~~~~~~l~~e~~  691 (736)
                       +.+-.++++..+||.-++
T Consensus       189 vkkiakLEaEC~rLr~l~r  207 (769)
T PF05911_consen  189 VKKIAKLEAECQRLRALVR  207 (769)
T ss_pred             HHHHHHHHHHHHHHHHHHh
Confidence             445555666666665544

The function of this family is unknown.

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=95.68  E-value=0.61  Score=43.41  Aligned_cols=101  Identities=22%  Similarity=0.321  Sum_probs=72.3

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 004698          559 ADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAARE  638 (736)
Q Consensus       559 ~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~yee~~~~~~~~~~~~~~~i~~L~~k~~~~E~~~~~~~~  638 (736)
                      ++.+.+.+..++.++.++.+++..|...=+.+..|+..+...-++.-. ..+....++.++++|+.||.++=+.++.-.+
T Consensus        18 ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~-~~~~~~~L~~el~~l~~ry~t~LellGEK~E   96 (120)
T PF12325_consen   18 VERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRA-LKKEVEELEQELEELQQRYQTLLELLGEKSE   96 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence            455555555666666666666666666666666666665555554432 3344567889999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 004698          639 QALSAQEEVEEWKRKYGVAVRE  660 (736)
Q Consensus       639 q~~~~~~E~~e~~~ky~~~~~e  660 (736)
                      +.+.++..+.|+|.-|..-+.+
T Consensus        97 ~veEL~~Dv~DlK~myr~Qi~~  118 (120)
T PF12325_consen   97 EVEELRADVQDLKEMYREQIDQ  118 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999876653

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]

Probab=95.65  E-value=5.5  Score=45.57  Aligned_cols=129  Identities=14%  Similarity=0.201  Sum_probs=81.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH-------HHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 004698          524 EDNMKLLKKQLEDSERYKSEYL-KRYDDAINDKKKLADDYTSRI-------NNLQGENISLREKSSSLSKTVDSLKNEIS  595 (736)
Q Consensus       524 e~e~~~lk~~Le~~e~~~~e~~-k~~e~~In~lkk~~e~~e~~~-------~~Le~k~~sl~~r~~~L~~~le~lk~e~~  595 (736)
                      +..+..++.++......+.... ...++.++.++..++++..-+       ...+.....+.+-+...+.+-+.|+.+++
T Consensus       254 d~~~~~L~~~l~~~~~~l~~Leld~aeeel~~I~e~ie~lYd~lE~EveA~~~V~~~~~~l~~~l~k~ke~n~~L~~Eie  333 (570)
T COG4477         254 DSRLERLKEQLVENSELLTQLELDEAEEELGLIQEKIESLYDLLEREVEAKNVVEENLPILPDYLEKAKENNEHLKEEIE  333 (570)
T ss_pred             HHHHHHHHHHHHHHHhHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHH
Confidence            4567777777777666666664 566666666666665554433       56777788888999999999999999999


Q ss_pred             HHHHHH---HHHHHHhhHHHH---HHHHHHHHHhh-------hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698          596 DWKRKY---DQVLTKQKAMED---QVCSEIEVLKS-------RSTAAEARLAAAREQALSAQEEVEEWKR  652 (736)
Q Consensus       596 e~~~~y---ee~~~~~~~~~~---~~~~~i~~L~~-------k~~~~E~~~~~~~~q~~~~~~E~~e~~~  652 (736)
                      .+++.|   +..+...++-..   ++.+.+.++..       .|+.+...+.....++...+++-.+...
T Consensus       334 ~V~~sY~l~e~e~~~vr~~e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~i~~~q~~~~e  403 (570)
T COG4477         334 RVKESYRLAETELGSVRKFEKELKELESVLDEILENIEAQEVAYSELQDNLEEIEKALTDIEDEQEKVQE  403 (570)
T ss_pred             HHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence            999999   444444443222   33333333333       4555555555555555555554433333

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=95.65  E-value=0.025  Score=54.09  Aligned_cols=53  Identities=21%  Similarity=0.172  Sum_probs=35.4

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      |+|+|..++|||+|+|++.+..  +.-    ...|.|+-.-..+       ...+.+.++||+|..
T Consensus         2 i~iiG~~~~GKssli~~~~~~~--~~~----~~~t~~~~~~~~~-------~~~~~~~i~D~~G~~   54 (158)
T cd00878           2 ILILGLDGAGKTTILYKLKLGE--VVT----TIPTIGFNVETVE-------YKNVSFTVWDVGGQD   54 (158)
T ss_pred             EEEEcCCCCCHHHHHHHHhcCC--CCC----CCCCcCcceEEEE-------ECCEEEEEEECCCCh
Confidence            6899999999999999999886  321    1224443221111       123678999999954

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=95.64  E-value=0.011  Score=60.76  Aligned_cols=23  Identities=39%  Similarity=0.537  Sum_probs=21.0

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      +|+|+||.|||||||||.|-|-.
T Consensus        33 ~vaI~GpSGSGKSTLLniig~ld   55 (226)
T COG1136          33 FVAIVGPSGSGKSTLLNLLGGLD   55 (226)
T ss_pred             EEEEECCCCCCHHHHHHHHhccc
Confidence            79999999999999999987654

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=95.64  E-value=0.014  Score=54.91  Aligned_cols=22  Identities=23%  Similarity=0.373  Sum_probs=20.4

Q ss_pred             EEeeCCCCCChhHHHHHHhCCC
Q 004698           74 VSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      |+|+|..++|||+|+|+|.+..
T Consensus         3 v~liG~~~vGKSsL~~~l~~~~   24 (142)
T TIGR02528         3 IMFIGSVGCGKTTLTQALQGEE   24 (142)
T ss_pred             EEEECCCCCCHHHHHHHHcCCc
Confidence            6899999999999999999875

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=95.63  E-value=0.014  Score=64.69  Aligned_cols=57  Identities=33%  Similarity=0.386  Sum_probs=36.7

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCCCc----ccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698           73 VVSVCGRARQGKSFILNQLLGRSSG----FQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA  140 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~~g----F~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~  140 (736)
                      -|.++|.+++|||+|+|.|++...+    +.+++. -.+|.++- +. |+     ++   .+.++||||+..
T Consensus       156 ~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~-pgtT~~~~-~~-~~-----~~---~~~l~DtPG~~~  216 (360)
T TIGR03597       156 DVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPF-PGTTLDLI-EI-PL-----DD---GHSLYDTPGIIN  216 (360)
T ss_pred             eEEEECCCCCCHHHHHHHHHhhccCCcceeeecCC-CCeEeeEE-EE-Ee-----CC---CCEEEECCCCCC
Confidence            5889999999999999999986432    333322 22355532 21 11     11   257899999853

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=95.61  E-value=7  Score=46.54  Aligned_cols=17  Identities=6%  Similarity=0.253  Sum_probs=6.7

Q ss_pred             HHHHHHHHHHHHHHHHH
Q 004698          527 MKLLKKQLEDSERYKSE  543 (736)
Q Consensus       527 ~~~lk~~Le~~e~~~~e  543 (736)
                      +..+....++.++....
T Consensus       432 ~~~~~~~~e~Lqk~~~~  448 (698)
T KOG0978|consen  432 IRQVEELSEELQKKEKN  448 (698)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33344444444443333

>cd04148 RGK RGK subfamily

Probab=95.59  E-value=0.02  Score=58.89  Aligned_cols=57  Identities=19%  Similarity=0.291  Sum_probs=36.7

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccce--EEeeccccccccCCCCceEEEEeecCCCc
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKG--LWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~G--iw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      |.|+|+.++|||+|+|.+.+..  |....  -..|.|  .......     .+|..+.+.++||+|..
T Consensus         3 I~lvG~~gvGKTsLi~~~~~~~--~~~~~--~~~t~~~~~~~~~i~-----~~~~~~~l~i~Dt~G~~   61 (221)
T cd04148           3 VVMLGSPGVGKSSLASQFTSGE--YDDHA--YDASGDDDTYERTVS-----VDGEESTLVVIDHWEQE   61 (221)
T ss_pred             EEEECCCCCcHHHHHHHHhcCC--cCccC--cCCCccccceEEEEE-----ECCEEEEEEEEeCCCcc
Confidence            7899999999999999997654  43111  112222  2222211     24556789999999965

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=95.59  E-value=0.023  Score=55.76  Aligned_cols=58  Identities=24%  Similarity=0.364  Sum_probs=40.1

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      |.|+|..++|||.|+|++++..  |.-.   -..|.|.-....-+   ..+|..+.+-+.||+|..
T Consensus         3 i~ivG~~~vGKTsli~~~~~~~--f~~~---~~~t~~~~~~~~~~---~~~~~~~~l~i~Dt~G~~   60 (170)
T cd04108           3 VIVVGDLSVGKTCLINRFCKDV--FDKN---YKATIGVDFEMERF---EILGVPFSLQLWDTAGQE   60 (170)
T ss_pred             EEEECCCCCCHHHHHHHHhcCC--CCCC---CCCceeeEEEEEEE---EECCEEEEEEEEeCCChH
Confidence            6799999999999999999875  6321   13355544332222   124666889999999953

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>CHL00189 infB translation initiation factor 2; Provisional

Probab=95.57  E-value=0.031  Score=67.10  Aligned_cols=98  Identities=15%  Similarity=0.288  Sum_probs=54.3

Q ss_pred             CEEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcccCCCCccch
Q 004698           70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYDQTGTYST  149 (736)
Q Consensus        70 ~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~~~~~~~d~  149 (736)
                      +..+|+|+|....|||+|+|.|.+..  |..+. ....|..+..+..++.   .++..+.+.|+||+|...+.     .+
T Consensus       243 r~p~V~IvGhvdvGKTSLld~L~~~~--~~~~e-~~GiTq~i~~~~v~~~---~~~~~~kItfiDTPGhe~F~-----~m  311 (742)
T CHL00189        243 RPPIVTILGHVDHGKTTLLDKIRKTQ--IAQKE-AGGITQKIGAYEVEFE---YKDENQKIVFLDTPGHEAFS-----SM  311 (742)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHhcc--Ccccc-CCccccccceEEEEEE---ecCCceEEEEEECCcHHHHH-----HH
Confidence            34579999999999999999998765  33211 1112222222221221   12345789999999964321     22


Q ss_pred             HHHHHhhhccceEEEccCCCCchHHhhhh
Q 004698          150 QIFSLAVLLSSMFIYNQMGGIDESAIDRL  178 (736)
Q Consensus       150 ~IFaLa~LLSS~~IyN~~g~i~e~~l~~L  178 (736)
                      +...+...=.-++||.....+..+..+.+
T Consensus       312 r~rg~~~aDiaILVVDA~dGv~~QT~E~I  340 (742)
T CHL00189        312 RSRGANVTDIAILIIAADDGVKPQTIEAI  340 (742)
T ss_pred             HHHHHHHCCEEEEEEECcCCCChhhHHHH
Confidence            33233322223566766555555555444

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=95.56  E-value=0.064  Score=64.85  Aligned_cols=55  Identities=31%  Similarity=0.434  Sum_probs=36.5

Q ss_pred             EEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCcc----ceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCT----KGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T----~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      .-|+|+|..++|||+|+|.|++....+  .+...++|    .+.|.|         +|.  .+.|+||+|+.
T Consensus       451 ~kI~ivG~~nvGKSSLin~l~~~~~~~--v~~~~gtT~d~~~~~~~~---------~~~--~~~liDTaG~~  509 (712)
T PRK09518        451 RRVALVGRPNVGKSSLLNQLTHEERAV--VNDLAGTTRDPVDEIVEI---------DGE--DWLFIDTAGIK  509 (712)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCccccc--cCCCCCCCcCcceeEEEE---------CCC--EEEEEECCCcc
Confidence            468999999999999999999876322  11111222    234444         233  46689999974

>cd04147 Ras_dva Ras-dva subfamily

Probab=95.56  E-value=0.022  Score=57.28  Aligned_cols=55  Identities=22%  Similarity=0.312  Sum_probs=35.4

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccc--cCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQV--ASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~--~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      |.|+|..++|||+|+|.+++..  |.-  .++......+.+.+         +|..+.+.++||+|..
T Consensus         2 v~vvG~~~vGKTsll~~~~~~~--~~~~~~~t~~~~~~~~~~~---------~~~~~~l~i~D~~G~~   58 (198)
T cd04147           2 LVFMGAAGVGKTALIQRFLYDT--FEPKYRRTVEEMHRKEYEV---------GGVSLTLDILDTSGSY   58 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHhCC--CCccCCCchhhheeEEEEE---------CCEEEEEEEEECCCch
Confidence            6799999999999999999865  422  11211111112222         2445778899999954

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04154 Arl2 Arl2 subfamily

Probab=95.53  E-value=0.019  Score=56.09  Aligned_cols=54  Identities=30%  Similarity=0.453  Sum_probs=36.1

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      -|.|+|+.++|||+|+|+|.+..  |.   .. ..|.|+-...  +.   .+  .+.+.++||+|..
T Consensus        16 kv~ivG~~~~GKTsL~~~l~~~~--~~---~~-~~t~g~~~~~--~~---~~--~~~l~l~D~~G~~   69 (173)
T cd04154          16 RILILGLDNAGKTTILKKLLGED--ID---TI-SPTLGFQIKT--LE---YE--GYKLNIWDVGGQK   69 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHccCC--CC---Cc-CCccccceEE--EE---EC--CEEEEEEECCCCH
Confidence            46699999999999999999873  32   12 2355632221  11   12  3678999999954

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>cd01899 Ygr210 Ygr210 subfamily

Probab=95.52  E-value=0.023  Score=61.84  Aligned_cols=62  Identities=26%  Similarity=0.415  Sum_probs=40.4

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccC----CCCCccceEEeecc--ccccc----c------CCC-CceEEEEeecC
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVAS----THRPCTKGLWLWSA--PLKRT----A------LDG-TEYNLLLLDSE  136 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~----~~~~~T~Giw~w~~--p~~~~----~------~~g-~~~~v~llDte  136 (736)
                      |+|+|.+++|||+|+|+|.+..  +.+++    |..| +.|+-.+..  |..+.    .      .+| ..+.+-++||+
T Consensus         1 i~ivG~pnvGKStLfn~lt~~~--~~~~~~pftT~~p-~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~a   77 (318)
T cd01899           1 IGLVGKPNAGKSTFFNAATLAD--VEIANYPFTTIDP-NVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVA   77 (318)
T ss_pred             CEEECCCCCCHHHHHHHHhCCC--CcccCCCCccccc-eeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECC
Confidence            6899999999999999999875  33322    2233 556655432  22110    1      123 33678999999


Q ss_pred             CC
Q 004698          137 GI  138 (736)
Q Consensus       137 G~  138 (736)
                      |+
T Consensus        78 Gl   79 (318)
T cd01899          78 GL   79 (318)
T ss_pred             CC
Confidence            98

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=95.52  E-value=0.02  Score=65.66  Aligned_cols=55  Identities=22%  Similarity=0.289  Sum_probs=38.6

Q ss_pred             EEEEEeeCCCCCChhHHHHHHhCCCCcccccC----CCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVAS----THRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        71 v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~----~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      ++-|+++|.+.+|||+|+|.|.+..  ..+++    |..| ..|++-+.           ...+.|.||+|+-
T Consensus       159 ~adV~LVG~PNAGKSTLln~Ls~ak--pkIadypfTTl~P-~lGvv~~~-----------~~~f~laDtPGli  217 (500)
T PRK12296        159 VADVGLVGFPSAGKSSLISALSAAK--PKIADYPFTTLVP-NLGVVQAG-----------DTRFTVADVPGLI  217 (500)
T ss_pred             cceEEEEEcCCCCHHHHHHHHhcCC--ccccccCcccccc-eEEEEEEC-----------CeEEEEEECCCCc
Confidence            5679999999999999999999764  23322    2222 34555432           2468899999983

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=95.51  E-value=0.05  Score=59.60  Aligned_cols=57  Identities=19%  Similarity=0.246  Sum_probs=39.1

Q ss_pred             EEEEEeeCCCCCChhHHHHHHhCCCCcccccC---CCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVAS---THRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        71 v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~---~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      ++=|+|+|.+.+|||+|+|.|.+..  ..+++   ++...+.|+.-+.        +  ...+.|+||+|+.
T Consensus       157 ~adV~lvG~pnaGKSTLl~~lt~~~--~~va~y~fTT~~p~ig~v~~~--------~--~~~~~i~D~PGli  216 (329)
T TIGR02729       157 LADVGLVGLPNAGKSTLISAVSAAK--PKIADYPFTTLVPNLGVVRVD--------D--GRSFVIADIPGLI  216 (329)
T ss_pred             cccEEEEcCCCCCHHHHHHHHhcCC--ccccCCCCCccCCEEEEEEeC--------C--ceEEEEEeCCCcc
Confidence            5679999999999999999999764  22221   2223355665431        1  2568899999984

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>cd01900 YchF YchF subfamily

Probab=95.51  E-value=0.018  Score=61.36  Aligned_cols=63  Identities=19%  Similarity=0.265  Sum_probs=39.1

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCccccc----CCCCCccceEEeeccccc---cccCCCC---ceEEEEeecCCCc
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVA----STHRPCTKGLWLWSAPLK---RTALDGT---EYNLLLLDSEGID  139 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~----~~~~~~T~Giw~w~~p~~---~~~~~g~---~~~v~llDteG~~  139 (736)
                      |+|+|.+.+|||+|+|.|.|...  .++    .|..| ..|++.+..+-.   ....++.   ...+.|+||+|+-
T Consensus         1 igivG~PN~GKSTLfn~Lt~~~~--~~~n~pftTi~p-~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~   73 (274)
T cd01900           1 IGIVGLPNVGKSTLFNALTKAGA--EAANYPFCTIEP-NVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLV   73 (274)
T ss_pred             CeEeCCCCCcHHHHHHHHhCCCC--ccccccccchhc-eeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcC
Confidence            68999999999999999998752  222    22233 347776643210   0000011   1348899999984

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>PRK13796 GTPase YqeH; Provisional

Probab=95.50  E-value=0.018  Score=63.91  Aligned_cols=55  Identities=31%  Similarity=0.376  Sum_probs=35.4

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCCCcc----cccCCCCCccceE-EeeccccccccCCCCceEEEEeecCCCc
Q 004698           73 VVSVCGRARQGKSFILNQLLGRSSGF----QVASTHRPCTKGL-WLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~~gF----~~~~~~~~~T~Gi-w~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      -|.|+|.++.|||+|+|.|++...|-    .+++. -.+|.++ |+   |+    .+|    ..|+||||+.
T Consensus       162 ~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~-pGTT~~~~~~---~l----~~~----~~l~DTPGi~  221 (365)
T PRK13796        162 DVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRF-PGTTLDKIEI---PL----DDG----SFLYDTPGII  221 (365)
T ss_pred             eEEEEcCCCCcHHHHHHHHHhhccCccceEEecCC-CCccceeEEE---Ec----CCC----cEEEECCCcc
Confidence            46789999999999999999754332    22222 2245553 33   12    122    4789999984

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=95.48  E-value=0.022  Score=58.07  Aligned_cols=58  Identities=16%  Similarity=0.167  Sum_probs=40.2

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI  138 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~  138 (736)
                      =|+|+|+.++|||+|+|+++...  |.-   ....|.|+-+....+.   .++..+.+-+.||.|.
T Consensus        11 kv~liG~~g~GKTtLi~~~~~~~--~~~---~~~~t~~~~~~~~~~~---~~~~~i~i~~~Dt~g~   68 (215)
T PTZ00132         11 KLILVGDGGVGKTTFVKRHLTGE--FEK---KYIPTLGVEVHPLKFY---TNCGPICFNVWDTAGQ   68 (215)
T ss_pred             eEEEECCCCCCHHHHHHHHHhCC--CCC---CCCCccceEEEEEEEE---ECCeEEEEEEEECCCc
Confidence            48999999999999998765433  322   1234667666554442   2455688999999985

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=95.45  E-value=0.025  Score=55.59  Aligned_cols=57  Identities=25%  Similarity=0.214  Sum_probs=37.9

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      |.|+|..++|||+|++++.+..  |.-  .. ..|.|--.. ..+   ..+|..+.+-++||.|..
T Consensus         5 i~vvG~~~vGKTsL~~~~~~~~--f~~--~~-~~t~~~~~~-~~~---~~~~~~~~l~i~Dt~G~~   61 (172)
T cd04141           5 IVMLGAGGVGKSAVTMQFISHS--FPD--YH-DPTIEDAYK-QQA---RIDNEPALLDILDTAGQA   61 (172)
T ss_pred             EEEECCCCCcHHHHHHHHHhCC--CCC--Cc-CCcccceEE-EEE---EECCEEEEEEEEeCCCch
Confidence            7899999999999999999764  531  11 223342111 112   124667889999999964

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]

Probab=95.44  E-value=5.9  Score=45.45  Aligned_cols=215  Identities=12%  Similarity=0.141  Sum_probs=103.0

Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 004698          510 GSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDS  589 (736)
Q Consensus       510 ~~e~~~L~~k~es~e~e~~~lk~~Le~~e~~~~e~~k~~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~  589 (736)
                      +......+...+.+...+..+...+..++...+.+...+.-.-  ..+.-.....+...+...+.....+.....+.+..
T Consensus       187 ~~~~~~~~~~~~~l~~~l~~lr~~~~~ae~~~~~~~~~~~l~~--~~~~~~~~~~~~~~ln~ql~~~~~~~~~~~a~l~~  264 (458)
T COG3206         187 EAQLEAFRRASDSLDERLEELRARLQEAEAQVEDFRAQHGLTD--AARGQLLSEQQLSALNTQLQSARARLAQAEARLAS  264 (458)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc--cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334455556666667777777777777777666653222111  00001111223334444444444444444444444


Q ss_pred             HHHHHHHHHHHH--HHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698          590 LKNEISDWKRKY--DQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEK  667 (736)
Q Consensus       590 lk~e~~e~~~~y--ee~~~~~~~~~~~~~~~i~~L~~k~~~~E~~~~~~~~q~~~~~~E~~e~~~ky~~~~~e~kalle~  667 (736)
                      ++..........  -+.++..  ..+.+.++...++....++-.+....+-++..++.++.+.+.....-..+.-+-..-
T Consensus       265 ~~~~~~~~~~~~~~~~~~~s~--~i~~Lr~~~~~~~~~~~~l~~~~~~~~p~~~~~~~q~~~~~~~~~~e~~~~~~~~~~  342 (458)
T COG3206         265 LLQLLPLGREAAALREVLESP--TIQDLRQQYAQVRQQIADLSTELGAKHPQLVALEAQLAELRQQIAAELRQILASLPN  342 (458)
T ss_pred             HHHhhcccccchhhhHHhccH--HHHHHHHHHHHHHHHHHHHHHhhcccChHHHhHHHHHHHHHHHHHHHHHHHHHhchh
Confidence            444444433211  0111100  233333444444444444444555666666666666655555444444333222222


Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhhhhc
Q 004698          668 AAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKVSFFDI  729 (736)
Q Consensus       668 ~~~~~e~~~e~~~~~~~~l~~e~~~~~~e~~~~~~~~~~k~~~~~~~~~~~~~~l~~~~~~~  729 (736)
                      .....++.....+.+..+++.+.+.+= ....++.+++.+++-...-+.+++.+.++..-.+
T Consensus       343 ~~~~l~~~~~~L~~~~~~l~~~~~~~~-~~~~~l~~L~Re~~~~r~~ye~lL~r~qe~~~~~  403 (458)
T COG3206         343 ELALLEQQEAALEKELAQLKGRLSKLP-KLQVQLRELEREAEAARSLYETLLQRYQELSIQE  403 (458)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhch-HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            223333444444444444444444332 2335577777777777777777777766655443

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=95.44  E-value=9.2  Score=46.74  Aligned_cols=169  Identities=18%  Similarity=0.188  Sum_probs=81.0

Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHhhHH
Q 004698          510 GSERSSLMLKYRSIEDNMKLLKKQLEDSERY---KSEYLKRYDDAINDKKKLADDYTSRI----------NNLQGENISL  576 (736)
Q Consensus       510 ~~e~~~L~~k~es~e~e~~~lk~~Le~~e~~---~~e~~k~~e~~In~lkk~~e~~e~~~----------~~Le~k~~sl  576 (736)
                      .++...|..+++.+++.+..+.+++-+.+..   +..-...++..+....+-++....+.          .++......+
T Consensus       407 eke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq~~e~e~~~q~ls~~~Q~~~et~el  486 (1195)
T KOG4643|consen  407 EKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSRQSLENEELDQLLSLQDQLEAETEEL  486 (1195)
T ss_pred             HHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            5555778888888888887777666554433   22222333333333333332221111          1222222222


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698          577 REKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGV  656 (736)
Q Consensus       577 ~~r~~~L~~~le~lk~e~~e~~~~yee~~~~~~~~~~~~~~~i~~L~~k~~~~E~~~~~~~~q~~~~~~E~~e~~~ky~~  656 (736)
                      ..++..|.+-|.....+++.|-.......++.+..    ..+++.+..||..+++++...++.-.++.+++.-++--   
T Consensus       487 ~~~iknlnk~L~~r~~elsrl~a~~~elkeQ~kt~----~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~t---  559 (1195)
T KOG4643|consen  487 LNQIKNLNKSLNNRDLELSRLHALKNELKEQYKTC----DIQYELLSNKLEELEELLGNLEEENAHLLKQIQSLKTT---  559 (1195)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH---
Confidence            22223333333333333333333333333322221    12223444455566666555555555555554333221   


Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 004698          657 AVREAKAALEKAAIVQERTSKEMQQREDVLR  687 (736)
Q Consensus       657 ~~~e~kalle~~~~~~e~~~e~~~~~~~~l~  687 (736)
                        .+-.++|||.+...+....+...=.++|.
T Consensus       560 --~qn~~~LEq~~n~lE~~~~elkk~idaL~  588 (1195)
T KOG4643|consen  560 --SQNGALLEQNNNDLELIHNELKKYIDALN  588 (1195)
T ss_pred             --hHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence              25668999999888866666666555555

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=95.44  E-value=2.6  Score=40.35  Aligned_cols=27  Identities=26%  Similarity=0.297  Sum_probs=15.2

Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 004698          510 GSERSSLMLKYRSIEDNMKLLKKQLED  536 (736)
Q Consensus       510 ~~e~~~L~~k~es~e~e~~~lk~~Le~  536 (736)
                      ..+...++.++.+++.+++.+...++.
T Consensus        16 ~~e~dsle~~v~~LEreLe~~q~~~e~   42 (140)
T PF10473_consen   16 ESEKDSLEDHVESLERELEMSQENKEC   42 (140)
T ss_pred             HHhHhhHHHHHHHHHHHHHHHHHhHHH
Confidence            455555555666666665555555544

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>PLN03108 Rab family protein; Provisional

Probab=95.39  E-value=0.023  Score=57.89  Aligned_cols=57  Identities=25%  Similarity=0.332  Sum_probs=36.6

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCC
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI  138 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~  138 (736)
                      |.|+|+.++|||+|+|+|.+..  |...+   ..|.|+-.....+.   .+|..+.+-++||.|.
T Consensus         9 ivivG~~gvGKStLi~~l~~~~--~~~~~---~~ti~~~~~~~~i~---~~~~~i~l~l~Dt~G~   65 (210)
T PLN03108          9 YIIIGDTGVGKSCLLLQFTDKR--FQPVH---DLTIGVEFGARMIT---IDNKPIKLQIWDTAGQ   65 (210)
T ss_pred             EEEECCCCCCHHHHHHHHHhCC--CCCCC---CCCccceEEEEEEE---ECCEEEEEEEEeCCCc
Confidence            7899999999999999999765  53321   12333222111111   1355577889999985

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=95.39  E-value=0.057  Score=55.80  Aligned_cols=94  Identities=18%  Similarity=0.280  Sum_probs=50.2

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccC-C--------CCCccceEEeeccccccc-------cCCCCceEEEEeecCC
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVAS-T--------HRPCTKGLWLWSAPLKRT-------ALDGTEYNLLLLDSEG  137 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~-~--------~~~~T~Giw~w~~p~~~~-------~~~g~~~~v~llDteG  137 (736)
                      |+|+|...+|||+|++.|+.....+.-.. +        ..-..+||=+-+.++...       ..+|.++.+.|+||+|
T Consensus         3 vaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTPG   82 (222)
T cd01885           3 ICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSPG   82 (222)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCCC
Confidence            78999999999999999986542221100 0        001123333332222110       1245678899999999


Q ss_pred             CcccCCCCccchHHHHHhhhccceEEEccCCCCch
Q 004698          138 IDAYDQTGTYSTQIFSLAVLLSSMFIYNQMGGIDE  172 (736)
Q Consensus       138 ~~~~~~~~~~d~~IFaLa~LLSS~~IyN~~g~i~e  172 (736)
                      ...+.     .....++...=.-++||.....+..
T Consensus        83 ~~~f~-----~~~~~~l~~aD~~ilVvD~~~g~~~  112 (222)
T cd01885          83 HVDFS-----SEVTAALRLCDGALVVVDAVEGVCV  112 (222)
T ss_pred             ccccH-----HHHHHHHHhcCeeEEEEECCCCCCH
Confidence            64321     1223333332233567776554443

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>cd04167 Snu114p Snu114p subfamily

Probab=95.39  E-value=0.051  Score=55.46  Aligned_cols=22  Identities=27%  Similarity=0.628  Sum_probs=19.7

Q ss_pred             EEeeCCCCCChhHHHHHHhCCC
Q 004698           74 VSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      |+|+|..++|||+|+++|++..
T Consensus         3 v~iiG~~~~GKTtL~~~l~~~~   24 (213)
T cd04167           3 VAIAGHLHHGKTSLLDMLIEQT   24 (213)
T ss_pred             EEEEcCCCCCHHHHHHHHHHhc
Confidence            7899999999999999998654

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>PLN03188 kinesin-12 family protein; Provisional

Probab=95.38  E-value=10  Score=47.80  Aligned_cols=270  Identities=18%  Similarity=0.208  Sum_probs=0.0

Q ss_pred             HHHHHhhccCCCcchhHHHHHHHHHHHHHhcccCCCchhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 004698          445 ERKLRAACHSSDASIDNVVKVLDGLISEYETSCHGPGKWQKLATFLQQSSEGPILDLVKRLIDQIGSERSSLMLKYRSIE  524 (736)
Q Consensus       445 e~~l~~~~~~~~~~~~~~~~~~~~ll~~Y~~~~~Gp~K~~~L~~fLq~~~~~~il~~~~~l~~~i~~e~~~L~~k~es~e  524 (736)
                      |.-+.+.|......+.++...++++..+-+-.           .-+-+.-++.|. -...+.|..-.-..-+....-++.
T Consensus       879 e~~le~~c~~qa~~i~ql~~lv~qyk~e~~~~-----------~~~~~~~~~ki~-~l~~~~dg~l~~~~~~~~~~~~~~  946 (1320)
T PLN03188        879 EMALEEFCTKQASEITQLNRLVQQYKHERECN-----------AIIGQTREDKII-RLESLMDGVLSKEDFLEEELASLM  946 (1320)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhh-----------HHHhhhhhhhHH-HHhhhcccccchhhhhhhhhhhhh


Q ss_pred             HHHHHHHHHHHHH-------------HHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 004698          525 DNMKLLKKQLEDS-------------ERYKSEYLKRYD--------DAINDKKKLADDYTSRINNLQGENISLREKSSSL  583 (736)
Q Consensus       525 ~e~~~lk~~Le~~-------------e~~~~e~~k~~e--------~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L  583 (736)
                      .+-..+++.+++.             +..++.|+..|+        ++|.+++..+..+..-......+...+-...-.+
T Consensus       947 ~~~~~~~~~y~~~p~~~~~~~e~~~~~~e~~~~~~~~d~~ErEvll~eI~dlr~qL~~~~d~s~~s~~~~~~~l~l~y~~ 1026 (1320)
T PLN03188        947 HEHKLLKEKYENHPEVLRTKIELKRVQDELEHYRNFYDMGEREVLLEEIQDLRSQLQYYIDSSLPSARKRNSLLKLTYSC 1026 (1320)
T ss_pred             hhHHHHHHHhhcChhhhhhhHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhhcccccchhhhccchhhhhhhc


Q ss_pred             -------------------HHHHHHHHHHHHHHHHHH----HHH---HHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 004698          584 -------------------SKTVDSLKNEISDWKRKY----DQV---LTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAR  637 (736)
Q Consensus       584 -------------------~~~le~lk~e~~e~~~~y----ee~---~~~~~~~~~~~~~~i~~L~~k~~~~E~~~~~~~  637 (736)
                                         +..|+..+....+...++    ++.   +...|..++.++.+++.=+.=.-.+.+.+.-+-
T Consensus      1027 ~~~~~~~~~~i~e~~~~~~e~~l~~er~~w~e~es~wislteelr~eles~r~l~Ekl~~EL~~eK~c~eel~~a~q~am 1106 (1320)
T PLN03188       1027 EPSQAPPLNTIPESTDESPEKKLEQERLRWTEAESKWISLAEELRTELDASRALAEKQKHELDTEKRCAEELKEAMQMAM 1106 (1320)
T ss_pred             CccccccccccccccccchhHHHHHHHHHHHHHhhhheechHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 004698          638 EQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQE------------RTSKEMQQREDVLREEFSSTLAEKEEEMKEKA  705 (736)
Q Consensus       638 ~q~~~~~~E~~e~~~ky~~~~~e~kalle~~~~~~e------------~~~e~~~~~~~~l~~e~~~~~~e~~~~~~~~~  705 (736)
                      .=--.-=+...|+..||..+..+.|.-.|-...+..            |=+..+++++.+||.|-.---.-.-.|.|-++
T Consensus      1107 ~ghar~~e~ya~l~ek~~~ll~~hr~i~egi~dvkkaaakag~kg~~~~f~~alaae~s~l~~ereker~~~~~enk~l~ 1186 (1320)
T PLN03188       1107 EGHARMLEQYADLEEKHIQLLARHRRIQEGIDDVKKAAARAGVRGAESKFINALAAEISALKVEREKERRYLRDENKSLQ 1186 (1320)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH


Q ss_pred             HHHHHHH---HHHhhHHHHhhhhh
Q 004698          706 TKIEHAE---QCLTTLRLELKVSF  726 (736)
Q Consensus       706 ~k~~~~~---~~~~~~~~~l~~~~  726 (736)
                      ..|+.+-   +-.-.|+-+|+|+.
T Consensus      1187 ~qlrdtaeav~aagellvrl~eae 1210 (1320)
T PLN03188       1187 AQLRDTAEAVQAAGELLVRLKEAE 1210 (1320)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHH

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=95.38  E-value=0.045  Score=61.90  Aligned_cols=57  Identities=21%  Similarity=0.225  Sum_probs=39.3

Q ss_pred             EEEEEeeCCCCCChhHHHHHHhCCCCcccccC---CCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVAS---THRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        71 v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~---~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      ++-|+++|.+.+|||+|||.|.+..  ..+++   ++...+-|++.+.        +  ...++|.||+|+.
T Consensus       158 ~adVglVG~pNaGKSTLLn~Lt~ak--~kIa~ypfTTl~PnlG~v~~~--------~--~~~~~laD~PGli  217 (424)
T PRK12297        158 LADVGLVGFPNVGKSTLLSVVSNAK--PKIANYHFTTLVPNLGVVETD--------D--GRSFVMADIPGLI  217 (424)
T ss_pred             cCcEEEEcCCCCCHHHHHHHHHcCC--CccccCCcceeceEEEEEEEe--------C--CceEEEEECCCCc
Confidence            5689999999999999999999865  22322   1112244554442        1  2468999999984

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.35  E-value=8.4  Score=45.76  Aligned_cols=82  Identities=17%  Similarity=0.264  Sum_probs=37.7

Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 004698          565 RINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKY---DQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQAL  641 (736)
Q Consensus       565 ~~~~Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~y---ee~~~~~~~~~~~~~~~i~~L~~k~~~~E~~~~~~~~q~~  641 (736)
                      .+.-+..+...++.++..|..++-.|-..+.+.+-..   ++.+...++-.+.-.++|+.|+.       |+......+.
T Consensus       431 ~iv~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqa-------rikE~q~kl~  503 (1118)
T KOG1029|consen  431 WIVYLNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQA-------RIKELQEKLQ  503 (1118)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHH-------HHHHHHHHHH
Confidence            3344555555555555555555555555555554433   33333333333333344444444       3333334444


Q ss_pred             HHHHHHHHHHHH
Q 004698          642 SAQEEVEEWKRK  653 (736)
Q Consensus       642 ~~~~E~~e~~~k  653 (736)
                      .+--|-.+|.++
T Consensus       504 ~l~~Ekq~l~~q  515 (1118)
T KOG1029|consen  504 KLAPEKQELNHQ  515 (1118)
T ss_pred             hhhhHHHHHHHH
Confidence            444444444443

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=95.34  E-value=0.04  Score=58.61  Aligned_cols=92  Identities=14%  Similarity=0.247  Sum_probs=48.0

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCc-ccccC----------CCCCccceEEeeccccccccCCCCceEEEEeecCCCcccC
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSG-FQVAS----------THRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYD  142 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~g-F~~~~----------~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~~  142 (736)
                      |+|+|..++|||+|.|.|+..... -.+|.          ...-..+||=+-.......   ..++.+.|+||+|...+.
T Consensus         2 v~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~---~~~~~i~liDTPG~~df~   78 (270)
T cd01886           2 IGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCF---WKDHRINIIDTPGHVDFT   78 (270)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEE---ECCEEEEEEECCCcHHHH
Confidence            789999999999999999843210 01110          0011223443332221111   123678899999964321


Q ss_pred             CCCccchHHHHHhhhccceEEEccCCCCchH
Q 004698          143 QTGTYSTQIFSLAVLLSSMFIYNQMGGIDES  173 (736)
Q Consensus       143 ~~~~~d~~IFaLa~LLSS~~IyN~~g~i~e~  173 (736)
                           ..+.-++...=.-++|......+...
T Consensus        79 -----~~~~~~l~~aD~ailVVDa~~g~~~~  104 (270)
T cd01886          79 -----IEVERSLRVLDGAVAVFDAVAGVEPQ  104 (270)
T ss_pred             -----HHHHHHHHHcCEEEEEEECCCCCCHH
Confidence                 12333444433345566655555443

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]

Probab=95.31  E-value=11  Score=46.63  Aligned_cols=25  Identities=20%  Similarity=0.155  Sum_probs=20.2

Q ss_pred             CCChHHHHHHHHHHHHHHHHHhhhc
Q 004698          375 PPEEVALGEAHEAAVQKALAVYNAG  399 (736)
Q Consensus       375 p~~e~~L~~~h~~~~~~Al~~F~~~  399 (736)
                      -++.++|......+...+...|.+.
T Consensus       159 K~EYeelK~E~~kAE~~t~~~~~kk  183 (1141)
T KOG0018|consen  159 KPEYEELKYEMAKAEETTTGNYKKK  183 (1141)
T ss_pred             hHHHHHHHHHHHHHHHHHhhHhhhh
Confidence            3566888888999999888888765

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=95.28  E-value=8.5  Score=45.41  Aligned_cols=35  Identities=17%  Similarity=0.186  Sum_probs=24.3

Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698          567 NNLQGENISLREKSSSLSKTVDSLKNEISDWKRKY  601 (736)
Q Consensus       567 ~~Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~y  601 (736)
                      ...+.....+...+..+.++...+..+...++..|
T Consensus       302 ~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY  336 (560)
T PF06160_consen  302 KYVEKNLKELYEYLEHAKEQNKELKEELERVSQSY  336 (560)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            45566666666777777777777777777777777

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>cd04143 Rhes_like Rhes_like subfamily

Probab=95.28  E-value=0.062  Score=56.43  Aligned_cols=57  Identities=26%  Similarity=0.462  Sum_probs=37.0

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      |.|+|..++|||+|+|++++..  |.-.  ..|.+..+....  +   .-+|+.+.+-++||.|..
T Consensus         3 VvvlG~~gvGKTSLi~r~~~~~--f~~~--y~pTi~d~~~k~--~---~i~~~~~~l~I~Dt~G~~   59 (247)
T cd04143           3 MVVLGASKVGKTAIVSRFLGGR--FEEQ--YTPTIEDFHRKL--Y---SIRGEVYQLDILDTSGNH   59 (247)
T ss_pred             EEEECcCCCCHHHHHHHHHcCC--CCCC--CCCChhHhEEEE--E---EECCEEEEEEEEECCCCh
Confidence            7899999999999999999765  5421  112221122111  1   124666788899999954

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]

Probab=95.27  E-value=8  Score=45.03  Aligned_cols=206  Identities=17%  Similarity=0.181  Sum_probs=125.3

Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 004698          512 ERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLK  591 (736)
Q Consensus       512 e~~~L~~k~es~e~e~~~lk~~Le~~e~~~~e~~k~~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk  591 (736)
                      +...+..+++.++.++..+...++..+....+++..|+++..-...++.-+..++...+..+-.++.++..|..++....
T Consensus       190 ~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N  269 (629)
T KOG0963|consen  190 EEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKAN  269 (629)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            46667788899999999999999999999999999888888888777777777777777777777777777776665544


Q ss_pred             HHHHH----HHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHH----HHHHHHHHHHHHHHHHHHHHHH------HHHH
Q 004698          592 NEISD----WKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEA----RLAAAREQALSAQEEVEEWKRK------YGVA  657 (736)
Q Consensus       592 ~e~~e----~~~~yee~~~~~~~~~~~~~~~i~~L~~k~~~~E~----~~~~~~~q~~~~~~E~~e~~~k------y~~~  657 (736)
                      .....    .-......+++.-.+..++...|..++.-.....+    .+++..+++....+++.++++|      |+.+
T Consensus       270 ~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~~sDYeeI  349 (629)
T KOG0963|consen  270 SSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEEREKHKAQISALEKELKAKISELEELKEKLNSRSDYEEI  349 (629)
T ss_pred             hhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHH
Confidence            22111    11111122222211122333333322221111111    1555555566666666666554      7777


Q ss_pred             HHHHHHHHHHHH---------------HHHHHhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 004698          658 VREAKAALEKAA---------------IVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLR  719 (736)
Q Consensus       658 ~~e~kalle~~~---------------~~~e~~~e~~~~~~~~l~~e~~~~~~e~~~~~~~~~~k~~~~~~~~~~~~  719 (736)
                      ..|.+.|  +++               .-.|+.+=+++.++..--+.++..-...+..+.....|.++.....+...
T Consensus       350 K~ELsiL--k~ief~~se~a~~~~~~~~~leslLl~knr~lq~e~a~Lr~~n~~~~~~~~~~~~~~~el~~~~~~~k  424 (629)
T KOG0963|consen  350 KKELSIL--KAIEFGDSEEANDEDETAKTLESLLLEKNRKLQNENASLRVANSGLSGRITELSKKGEELEAKATEQK  424 (629)
T ss_pred             HHHHHHH--HHhhcCCcccccccccccchHHHHHHHHHhhhhHHHHHHhccccccchhHHHHHhhhhhhHHHHHHHH
Confidence            7777555  333               22345555666666666666666666666667777777777666555543

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=95.24  E-value=0.028  Score=54.78  Aligned_cols=54  Identities=20%  Similarity=0.186  Sum_probs=36.8

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      |.|+|+.++|||+|+++|.+..  |.-  . ...|.|.....       .++..+.+.++||.|..
T Consensus         2 i~ivG~~~vGKTsli~~~~~~~--~~~--~-~~pt~g~~~~~-------i~~~~~~l~i~Dt~G~~   55 (164)
T cd04162           2 ILVLGLDGAGKTSLLHSLSSER--SLE--S-VVPTTGFNSVA-------IPTQDAIMELLEIGGSQ   55 (164)
T ss_pred             EEEECCCCCCHHHHHHHHhcCC--Ccc--c-ccccCCcceEE-------EeeCCeEEEEEECCCCc
Confidence            6799999999999999999764  431  1 12345543211       12345789999999853

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=95.24  E-value=0.039  Score=60.95  Aligned_cols=64  Identities=20%  Similarity=0.257  Sum_probs=39.5

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCCCccccc----CCCCCccceEEeecccccc-----ccCCC-CceEEEEeecCCCc
Q 004698           73 VVSVCGRARQGKSFILNQLLGRSSGFQVA----STHRPCTKGLWLWSAPLKR-----TALDG-TEYNLLLLDSEGID  139 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~----~~~~~~T~Giw~w~~p~~~-----~~~~g-~~~~v~llDteG~~  139 (736)
                      -|+|+|.+.+|||+|+|.|.|...  .++    .|..| ..|+.-+..+-..     ..|.. ....+.|+||+|+-
T Consensus         4 ~vgIVG~PNvGKSTLfnaLt~~~~--~v~nypftTi~p-~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~   77 (364)
T PRK09601          4 KCGIVGLPNVGKSTLFNALTKAGA--EAANYPFCTIEP-NVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLV   77 (364)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC--eecccccccccc-eEEEEEeccccchhhHHhcCCccccCceEEEEECCCCC
Confidence            489999999999999999998751  222    22233 4566655432100     01110 11348899999984

>cd01882 BMS1 Bms1

Probab=95.23  E-value=0.029  Score=57.95  Aligned_cols=55  Identities=20%  Similarity=0.320  Sum_probs=36.7

Q ss_pred             CCEEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccce-EEeeccccccccCCCCceEEEEeecCC
Q 004698           69 EPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKG-LWLWSAPLKRTALDGTEYNLLLLDSEG  137 (736)
Q Consensus        69 ~~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~G-iw~w~~p~~~~~~~g~~~~v~llDteG  137 (736)
                      .|-.+|+|+|+.++|||+|+|.|++...+-.+     ....| +.+++.       .  +..+.++||+|
T Consensus        37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~-----~~~~g~i~i~~~-------~--~~~i~~vDtPg   92 (225)
T cd01882          37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNI-----SDIKGPITVVTG-------K--KRRLTFIECPN   92 (225)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhcccCcc-----ccccccEEEEec-------C--CceEEEEeCCc
Confidence            34457999999999999999999976322111     12233 455431       1  24578999997

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>cd04144 Ras2 Ras2 subfamily

Probab=95.23  E-value=0.022  Score=56.77  Aligned_cols=56  Identities=25%  Similarity=0.205  Sum_probs=36.4

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCC
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI  138 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~  138 (736)
                      |.|+|..++|||+|+|+|.+..  |.-.  . +.|.|.-.... +   ..+|..+.+-++||+|.
T Consensus         2 i~ivG~~~vGKTsli~~l~~~~--f~~~--~-~~t~~~~~~~~-~---~~~~~~~~l~i~Dt~G~   57 (190)
T cd04144           2 LVVLGDGGVGKTALTIQLCLNH--FVET--Y-DPTIEDSYRKQ-V---VVDGQPCMLEVLDTAGQ   57 (190)
T ss_pred             EEEECCCCCCHHHHHHHHHhCC--CCcc--C-CCchHhhEEEE-E---EECCEEEEEEEEECCCc
Confidence            6789999999999999998654  5321  1 22333222111 1   12456678889999995

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>PRK09602 translation-associated GTPase; Reviewed

Probab=95.22  E-value=0.033  Score=62.46  Aligned_cols=65  Identities=23%  Similarity=0.314  Sum_probs=39.6

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCCCcccccC---CCCCccceEEee------------ccccccccCCCC-ceEEEEeecC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRSSGFQVAS---THRPCTKGLWLW------------SAPLKRTALDGT-EYNLLLLDSE  136 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~---~~~~~T~Giw~w------------~~p~~~~~~~g~-~~~v~llDte  136 (736)
                      -|+|+|.+.+|||+|+|.|.+..  +.+++   ++...+.|+-.-            +.|.....++|. .+.+-|+||+
T Consensus         3 kigivG~pnvGKSTlfn~Lt~~~--~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~a   80 (396)
T PRK09602          3 TIGLVGKPNVGKSTFFNAATLAD--VEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVA   80 (396)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCc--ccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcC
Confidence            38999999999999999999875  44322   122234565221            122211012332 2567899999


Q ss_pred             CCc
Q 004698          137 GID  139 (736)
Q Consensus       137 G~~  139 (736)
                      |+-
T Consensus        81 Gl~   83 (396)
T PRK09602         81 GLV   83 (396)
T ss_pred             CcC
Confidence            983

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=95.21  E-value=0.022  Score=54.67  Aligned_cols=58  Identities=28%  Similarity=0.420  Sum_probs=42.1

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      |.|+|+.++|||+|++.|.+..  |.-   ....|.|+-....++..   ++..+.+-+.||.|..
T Consensus         2 i~vvG~~~vGKtsl~~~~~~~~--~~~---~~~~t~~~~~~~~~~~~---~~~~~~l~i~D~~g~~   59 (162)
T PF00071_consen    2 IVVVGDSGVGKTSLINRLINGE--FPE---NYIPTIGIDSYSKEVSI---DGKPVNLEIWDTSGQE   59 (162)
T ss_dssp             EEEEESTTSSHHHHHHHHHHSS--TTS---SSETTSSEEEEEEEEEE---TTEEEEEEEEEETTSG
T ss_pred             EEEECCCCCCHHHHHHHHHhhc--ccc---ccccccccccccccccc---cccccccccccccccc
Confidence            6799999999999999998764  642   22336666655555433   3667889999999853

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>PF14915 CCDC144C: CCDC144C protein coiled-coil region

Probab=95.12  E-value=5.5  Score=42.38  Aligned_cols=23  Identities=13%  Similarity=0.205  Sum_probs=11.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 004698          635 AAREQALSAQEEVEEWKRKYGVA  657 (736)
Q Consensus       635 ~~~~q~~~~~~E~~e~~~ky~~~  657 (736)
                      .+.+.+..++..+.|+++.|+.-
T Consensus       183 ~~QrdL~Qtq~q~KE~e~m~qne  205 (305)
T PF14915_consen  183 SVQRDLSQTQCQIKEIEHMYQNE  205 (305)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhH
Confidence            34444555555555555555443

>cd04169 RF3 RF3 subfamily

Probab=95.12  E-value=0.082  Score=56.19  Aligned_cols=23  Identities=17%  Similarity=0.239  Sum_probs=20.5

Q ss_pred             EEEEeeCCCCCChhHHHHHHhCC
Q 004698           72 GVVSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~~~   94 (736)
                      -.|+|+|..++|||+|+|.|+..
T Consensus         3 Rni~ivGh~~~GKTTL~e~ll~~   25 (267)
T cd04169           3 RTFAIISHPDAGKTTLTEKLLLF   25 (267)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHh
Confidence            45999999999999999999854

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=95.11  E-value=0.035  Score=67.31  Aligned_cols=57  Identities=23%  Similarity=0.336  Sum_probs=40.0

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCCCcccccCCCC---CccceEEeeccccccccCCCCceEEEEeecCCCcccC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHR---PCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYD  142 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~---~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~~  142 (736)
                      .|+++|..++|||+|.|.|.|..  +.+|+...   ....|.+.|           .+..+.++||+|..+..
T Consensus         5 ~IaLvG~pNvGKSTLfN~Ltg~~--~~vgn~pGvTve~k~g~~~~-----------~~~~i~lvDtPG~ysl~   64 (772)
T PRK09554          5 TIGLIGNPNSGKTTLFNQLTGAR--QRVGNWAGVTVERKEGQFST-----------TDHQVTLVDLPGTYSLT   64 (772)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC--CccCCCCCceEeeEEEEEEc-----------CceEEEEEECCCccccc
Confidence            48999999999999999999875  34544311   112344433           23568899999987654

>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]

Probab=95.08  E-value=9.7  Score=45.00  Aligned_cols=79  Identities=14%  Similarity=0.190  Sum_probs=50.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-----HHH-HHHHHHHHHhhHHHHHHHHHHHHHhhhhHH
Q 004698          555 KKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEIS-----DWK-RKYDQVLTKQKAMEDQVCSEIEVLKSRSTA  628 (736)
Q Consensus       555 lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e~~-----e~~-~~yee~~~~~~~~~~~~~~~i~~L~~k~~~  628 (736)
                      ....++.+.++.++++.-++.-+.|.-....-+.++.+-..     ++. ...++-.....+.++.+-.++=+|++|.+.
T Consensus       388 ~E~EvD~lksQLADYQQALD~QQTRAlQYQQAi~ALekAk~Lc~l~dLt~~~~e~~~~~f~A~~e~~Te~lL~Le~kms~  467 (1480)
T COG3096         388 AELEVDELKSQLADYQQALDVQQTRAIQYQQAIAALERAKELCHLPDLTADSAEEWLETFQAKEEEATEKLLSLEQKMSM  467 (1480)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcCccccchhhHHHHHHHHHHhHHHHHHHHHHHHHhccH
Confidence            35566888888888888888888877777776666653221     111 112444444555566666666778888887


Q ss_pred             HHHHH
Q 004698          629 AEARL  633 (736)
Q Consensus       629 ~E~~~  633 (736)
                      +++..
T Consensus       468 s~AA~  472 (1480)
T COG3096         468 AQAAH  472 (1480)
T ss_pred             HHHHH
Confidence            77763

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=95.08  E-value=0.047  Score=54.17  Aligned_cols=58  Identities=22%  Similarity=0.253  Sum_probs=38.2

Q ss_pred             CEEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEe--eccccccccCCCCceEEEEeecCCC
Q 004698           70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWL--WSAPLKRTALDGTEYNLLLLDSEGI  138 (736)
Q Consensus        70 ~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~--w~~p~~~~~~~g~~~~v~llDteG~  138 (736)
                      ++. |.++|..++|||+|+|++.+..  |.  ++  ..|.|+-.  +..++    .++..+.+.+.||.|.
T Consensus         3 ~~k-v~~vG~~~~GKTsli~~~~~~~--~~--~~--~~t~~~~~~~~~~~~----~~~~~~~l~l~Dt~G~   62 (183)
T cd04152           3 SLH-IVMLGLDSAGKTTVLYRLKFNE--FV--NT--VPTKGFNTEKIKVSL----GNSKGITFHFWDVGGQ   62 (183)
T ss_pred             ceE-EEEECCCCCCHHHHHHHHhcCC--cC--Cc--CCccccceeEEEeec----cCCCceEEEEEECCCc
Confidence            344 6788999999999999998754  42  11  23445322  22221    2345678999999995

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd04168 TetM_like Tet(M)-like subfamily

Probab=95.07  E-value=0.055  Score=56.45  Aligned_cols=90  Identities=20%  Similarity=0.276  Sum_probs=48.7

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCC----------cccccCCC-CCccceEEeeccccccccCCCCceEEEEeecCCCcccC
Q 004698           74 VSVCGRARQGKSFILNQLLGRSS----------GFQVASTH-RPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYD  142 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~----------gF~~~~~~-~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~~  142 (736)
                      |+|+|..++|||+|.|+|+....          |-.+.... ...++|+=+-......   ...++.+.++||+|...+.
T Consensus         2 i~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~---~~~~~~i~liDTPG~~~f~   78 (237)
T cd04168           2 IGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASF---QWEDTKVNLIDTPGHMDFI   78 (237)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEE---EECCEEEEEEeCCCccchH
Confidence            78999999999999999986431          11111100 0112232221111111   1234678999999975321


Q ss_pred             CCCccchHHHHHhhhccceEEEccCCCCc
Q 004698          143 QTGTYSTQIFSLAVLLSSMFIYNQMGGID  171 (736)
Q Consensus       143 ~~~~~d~~IFaLa~LLSS~~IyN~~g~i~  171 (736)
                           ..+.-++...=.-++|+.....+.
T Consensus        79 -----~~~~~~l~~aD~~IlVvd~~~g~~  102 (237)
T cd04168          79 -----AEVERSLSVLDGAILVISAVEGVQ  102 (237)
T ss_pred             -----HHHHHHHHHhCeEEEEEeCCCCCC
Confidence                 123334445445567887765554

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>TIGR01393 lepA GTP-binding protein LepA

Probab=95.06  E-value=0.062  Score=63.50  Aligned_cols=102  Identities=21%  Similarity=0.298  Sum_probs=56.6

Q ss_pred             EEEEEeeCCCCCChhHHHHHHhCCCCcccc---cCCCCC-----ccceEEeecccccc--ccCCCCceEEEEeecCCCcc
Q 004698           71 IGVVSVCGRARQGKSFILNQLLGRSSGFQV---ASTHRP-----CTKGLWLWSAPLKR--TALDGTEYNLLLLDSEGIDA  140 (736)
Q Consensus        71 v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~---~~~~~~-----~T~Giw~w~~p~~~--~~~~g~~~~v~llDteG~~~  140 (736)
                      |-=|+|+|....|||+|+++|+.....+.-   +.+...     .+.||=+...++..  ...+|..+.+.|+||+|...
T Consensus         3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d   82 (595)
T TIGR01393         3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD   82 (595)
T ss_pred             eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence            445899999999999999999875322211   111111     23466544433221  11256678899999999753


Q ss_pred             cCCCCccchHHHHHhhhccceEEEccCCCCchHHhhh
Q 004698          141 YDQTGTYSTQIFSLAVLLSSMFIYNQMGGIDESAIDR  177 (736)
Q Consensus       141 ~~~~~~~d~~IFaLa~LLSS~~IyN~~g~i~e~~l~~  177 (736)
                      +.     ..+.-++...=.-++||.....+..+.+..
T Consensus        83 F~-----~~v~~~l~~aD~aILVvDat~g~~~qt~~~  114 (595)
T TIGR01393        83 FS-----YEVSRSLAACEGALLLVDAAQGIEAQTLAN  114 (595)
T ss_pred             HH-----HHHHHHHHhCCEEEEEecCCCCCCHhHHHH
Confidence            21     122223333222345666655555444443

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>cd04158 ARD1 ARD1 subfamily

Probab=95.05  E-value=0.04  Score=53.78  Aligned_cols=53  Identities=23%  Similarity=0.223  Sum_probs=36.8

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      |.++|+.++|||+|+|+|.+..  |.  + . ..|.|+-....       +...+.+.++||+|..
T Consensus         2 vvlvG~~~~GKTsl~~~l~~~~--~~--~-~-~~T~~~~~~~~-------~~~~~~i~l~Dt~G~~   54 (169)
T cd04158           2 VVTLGLDGAGKTTILFKLKQDE--FM--Q-P-IPTIGFNVETV-------EYKNLKFTIWDVGGKH   54 (169)
T ss_pred             EEEECCCCCCHHHHHHHHhcCC--CC--C-c-CCcCceeEEEE-------EECCEEEEEEECCCCh
Confidence            5699999999999999999864  42  1 1 23556444321       1234789999999964

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=95.03  E-value=6.3  Score=48.18  Aligned_cols=40  Identities=20%  Similarity=0.307  Sum_probs=26.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 004698          545 LKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLS  584 (736)
Q Consensus       545 ~k~~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~  584 (736)
                      +++++...+.-...+..++.++..+++++....+|...+.
T Consensus       190 e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~rer~~~~~  229 (1072)
T KOG0979|consen  190 EKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVRERERKKS  229 (1072)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3556666666666667777777777777777776655443

>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]

Probab=94.98  E-value=5.3  Score=41.40  Aligned_cols=103  Identities=15%  Similarity=0.181  Sum_probs=48.6

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 004698          559 ADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQK-AMEDQVCSEIEVLKSRSTAAEARLAAAR  637 (736)
Q Consensus       559 ~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~yee~~~~~~-~~~~~~~~~i~~L~~k~~~~E~~~~~~~  637 (736)
                      +.+.+.....+..-+-.+-.+...++.+++.+......|..+.+..+...+ ..+.++-.++..|.+.+...+..+..++
T Consensus        33 ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~le~~~~~~~~~~~~~~  112 (225)
T COG1842          33 IRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSLEDLAKALEAELQQAE  112 (225)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333344444444444555555555566666666666666544333322 1122333444444444444444445555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 004698          638 EQALSAQEEVEEWKRKYGVAVREA  661 (736)
Q Consensus       638 ~q~~~~~~E~~e~~~ky~~~~~e~  661 (736)
                      .+...++..+..+..||..+..+.
T Consensus       113 ~~~~~l~~~~~~Le~Ki~e~~~~~  136 (225)
T COG1842         113 EQVEKLKKQLAALEQKIAELRAKK  136 (225)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555555555555554444443

>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]

Probab=94.97  E-value=12  Score=46.31  Aligned_cols=20  Identities=20%  Similarity=0.418  Sum_probs=18.2

Q ss_pred             EEEeeCCCCCChhHHHHHHh
Q 004698           73 VVSVCGRARQGKSFILNQLL   92 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~   92 (736)
                      |-|||||.|||||=||..+.
T Consensus        27 FTaIIGPNGSGKSNlMDAIS   46 (1141)
T KOG0018|consen   27 FTAIIGPNGSGKSNLMDAIS   46 (1141)
T ss_pred             ceeeeCCCCCchHHHHHHHH
Confidence            77999999999999999863

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=94.97  E-value=0.049  Score=54.49  Aligned_cols=40  Identities=30%  Similarity=0.347  Sum_probs=31.2

Q ss_pred             eCHHHHHHhhccCCCEEEEEeeCCCCCChhHHHHHHhCCC
Q 004698           56 MDPEAVAALQLVKEPIGVVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        56 l~~eAl~~L~~i~~~v~vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      ++++..++|...-.+=.+|.|+|+.++|||+|++.|+|..
T Consensus        10 ~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i   49 (186)
T cd01130          10 FSPLQAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFI   49 (186)
T ss_pred             CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            3477778887543334578999999999999999999764

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]

Probab=94.93  E-value=0.042  Score=58.58  Aligned_cols=78  Identities=19%  Similarity=0.185  Sum_probs=47.4

Q ss_pred             EEEeeCCCCCChhHHHHHHhC----CCCcccccC--CCCCccce-EEeeccccccccCCCCceEEEEeecCCCcccCCCC
Q 004698           73 VVSVCGRARQGKSFILNQLLG----RSSGFQVAS--THRPCTKG-LWLWSAPLKRTALDGTEYNLLLLDSEGIDAYDQTG  145 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~----~~~gF~~~~--~~~~~T~G-iw~w~~p~~~~~~~g~~~~v~llDteG~~~~~~~~  145 (736)
                      -|=|+|-+..|||.|+|.+-.    ....-.+|+  |+-..+.+ |-+...           ..+.++||+|...++-..
T Consensus       145 ~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~r-----------p~vy~iDTPGil~P~I~~  213 (335)
T KOG2485|consen  145 NVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHR-----------PPVYLIDTPGILVPSIVD  213 (335)
T ss_pred             eEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccC-----------CceEEecCCCcCCCCCCC
Confidence            367899999999999999753    222233433  22233344 333322           348899999998776555


Q ss_pred             ccchHHHHHhhhccce
Q 004698          146 TYSTQIFSLAVLLSSM  161 (736)
Q Consensus       146 ~~d~~IFaLa~LLSS~  161 (736)
                      ..+.-=.||+.++++.
T Consensus       214 ~e~~lKLAL~g~Vkd~  229 (335)
T KOG2485|consen  214 VEDGLKLALCGLVKDH  229 (335)
T ss_pred             HHHhhhhhhccccccc
Confidence            5554444565555543

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=94.93  E-value=0.028  Score=46.76  Aligned_cols=58  Identities=16%  Similarity=0.198  Sum_probs=35.4

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccC-----CCCceEEEEeec
Q 004698           73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTAL-----DGTEYNLLLLDS  135 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~-----~g~~~~v~llDt  135 (736)
                      +|.|+|+.++|||++++.|...-.|..+     ....++|++...+.....     .......+++|+
T Consensus         1 ~i~i~G~~gsGKst~~~~l~~~l~~~~~-----~~i~~~~I~eg~~~~~~~~~~~~~~~~d~~Iyld~   63 (69)
T cd02019           1 IIAITGGSGSGKSTVAKKLAEQLGGRSV-----VVLDEIVILEGLYASYKSRDARIRDLADLKIYLDA   63 (69)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhcCCCE-----EEEeEEEEecchhhhhhhHHhhccccccEEEEEEe
Confidence            5889999999999999998865211111     123448888755543211     111234677776

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>CHL00071 tufA elongation factor Tu

Probab=94.92  E-value=0.093  Score=59.24  Aligned_cols=104  Identities=13%  Similarity=0.145  Sum_probs=55.0

Q ss_pred             CCCEEEEEeeCCCCCChhHHHHHHhCCCC------ccccc---CCCCCccceEEeeccccccccCCCCceEEEEeecCCC
Q 004698           68 KEPIGVVSVCGRARQGKSFILNQLLGRSS------GFQVA---STHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI  138 (736)
Q Consensus        68 ~~~v~vVsv~G~~rtGKS~LlN~l~~~~~------gF~~~---~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~  138 (736)
                      ..|..-|+|+|...+|||+|+|+|++...      ++...   ....-...|+=+-.......   .+...+.|+||||.
T Consensus         9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~---~~~~~~~~iDtPGh   85 (409)
T CHL00071          9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYE---TENRHYAHVDCPGH   85 (409)
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEc---cCCeEEEEEECCCh
Confidence            34555699999999999999999997531      11110   00111124444433222221   12356889999994


Q ss_pred             cccCCCCccchHHHHHhhhccceEEEccCCCCchHHhhhhH
Q 004698          139 DAYDQTGTYSTQIFSLAVLLSSMFIYNQMGGIDESAIDRLS  179 (736)
Q Consensus       139 ~~~~~~~~~d~~IFaLa~LLSS~~IyN~~g~i~e~~l~~L~  179 (736)
                      ..     -....+.+++..=.-++|......+..++.+++.
T Consensus        86 ~~-----~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~  121 (409)
T CHL00071         86 AD-----YVKNMITGAAQMDGAILVVSAADGPMPQTKEHIL  121 (409)
T ss_pred             HH-----HHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHH
Confidence            21     1133344544322334555555455555555443

>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]

Probab=94.92  E-value=0.033  Score=62.56  Aligned_cols=61  Identities=26%  Similarity=0.388  Sum_probs=39.5

Q ss_pred             CCEEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           69 EPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        69 ~~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      .++. |+|+|++..|||.|||.|.....  .+-+.+-.+|+..-=  .+|   .++|  +.|.|.||-|+-
T Consensus       267 ~gl~-iaIvGrPNvGKSSLlNaL~~~dr--sIVSpv~GTTRDaie--a~v---~~~G--~~v~L~DTAGiR  327 (531)
T KOG1191|consen  267 SGLQ-IAIVGRPNVGKSSLLNALSREDR--SIVSPVPGTTRDAIE--AQV---TVNG--VPVRLSDTAGIR  327 (531)
T ss_pred             cCCe-EEEEcCCCCCHHHHHHHHhcCCc--eEeCCCCCcchhhhe--eEe---ecCC--eEEEEEeccccc
Confidence            4555 88999999999999999998752  222222223432211  111   2456  678999999984

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=94.91  E-value=13  Score=45.55  Aligned_cols=99  Identities=20%  Similarity=0.189  Sum_probs=48.6

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHhhHHHHHHHHHHHHHhhhhHHHHHHHH
Q 004698          561 DYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQV------LTKQKAMEDQVCSEIEVLKSRSTAAEARLA  634 (736)
Q Consensus       561 ~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~yee~------~~~~~~~~~~~~~~i~~L~~k~~~~E~~~~  634 (736)
                      .++.+++++-+.+-.+++....|..+.+.+..+.....+.|.+.      .++..-..+++..+.++|+.+...+-..+.
T Consensus       419 ~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq~~e~e~~~q~ls~~~Q~~~et~el~~~iknlnk~L~  498 (1195)
T KOG4643|consen  419 ILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSRQSLENEELDQLLSLQDQLEAETEELLNQIKNLNKSLN  498 (1195)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333444444444444444445555555555222      222333344555556666665555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698          635 AAREQALSAQEEVEEWKRKYGVAVR  659 (736)
Q Consensus       635 ~~~~q~~~~~~E~~e~~~ky~~~~~  659 (736)
                      .....+......++++++-|...-.
T Consensus       499 ~r~~elsrl~a~~~elkeQ~kt~~~  523 (1195)
T KOG4643|consen  499 NRDLELSRLHALKNELKEQYKTCDI  523 (1195)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555566666666665555443

>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=94.91  E-value=0.036  Score=53.26  Aligned_cols=40  Identities=35%  Similarity=0.643  Sum_probs=32.7

Q ss_pred             EEEEeeCCCCCChhHHHHHHhCCCC-cccccCCCCCccceEEeecccc
Q 004698           72 GVVSVCGRARQGKSFILNQLLGRSS-GFQVASTHRPCTKGLWLWSAPL  118 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~~~~~-gF~~~~~~~~~T~Giw~w~~p~  118 (736)
                      -||+++||.++|||+|+..+.|... -|       +||--+|+-...+
T Consensus        29 eivtlMGPSGcGKSTLls~~~G~La~~F-------~~~G~~~l~~~~l   69 (213)
T COG4136          29 EIVTLMGPSGCGKSTLLSWMIGALAGQF-------SCTGELWLNEQRL   69 (213)
T ss_pred             cEEEEECCCCccHHHHHHHHHhhcccCc-------ceeeEEEECCeec
Confidence            3799999999999999999998753 25       5788899876544

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=94.91  E-value=0.049  Score=55.26  Aligned_cols=57  Identities=18%  Similarity=0.275  Sum_probs=35.2

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      |.++|+.++|||+|+++|.+..  |.-..+......+.|.-  +.     .+....+.|+||+|..
T Consensus         3 vll~G~~~sGKTsL~~~l~~~~--~~~t~~s~~~~~~~~~~--~~-----~~~~~~~~l~D~pG~~   59 (203)
T cd04105           3 VLLLGPSDSGKTALFTKLTTGK--YRSTVTSIEPNVATFIL--NS-----EGKGKKFRLVDVPGHP   59 (203)
T ss_pred             EEEEcCCCCCHHHHHHHHhcCC--CCCccCcEeecceEEEe--ec-----CCCCceEEEEECCCCH
Confidence            7799999999999999999764  32211111112223221  11     1234678899999964

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>smart00787 Spc7 Spc7 kinetochore protein

Probab=94.91  E-value=7.1  Score=42.50  Aligned_cols=48  Identities=17%  Similarity=0.118  Sum_probs=21.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698          554 DKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKY  601 (736)
Q Consensus       554 ~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~y  601 (736)
                      .+.+.++.+.++...|..+..-+..-+-.|.+.++.++.++..+++.-
T Consensus       148 ~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~  195 (312)
T smart00787      148 GLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLE  195 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            334444444444444444444444444444444444444444444333

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>PTZ00369 Ras-like protein; Provisional

Probab=94.88  E-value=0.047  Score=54.42  Aligned_cols=57  Identities=23%  Similarity=0.173  Sum_probs=35.8

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      |.|+|..++|||+|++++.+..  |.-  .. ..|.|--++ ..+.   .++..+.+-++||+|..
T Consensus         8 i~iiG~~~~GKTsLi~~~~~~~--~~~--~~-~~t~~~~~~-~~~~---~~~~~~~l~i~Dt~G~~   64 (189)
T PTZ00369          8 LVVVGGGGVGKSALTIQFIQNH--FID--EY-DPTIEDSYR-KQCV---IDEETCLLDILDTAGQE   64 (189)
T ss_pred             EEEECCCCCCHHHHHHHHhcCC--CCc--Cc-CCchhhEEE-EEEE---ECCEEEEEEEEeCCCCc
Confidence            6689999999999999999764  421  11 123332221 1111   23555677789999964

>cd04131 Rnd Rnd subfamily

Probab=94.85  E-value=0.051  Score=53.92  Aligned_cols=57  Identities=25%  Similarity=0.318  Sum_probs=38.8

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      |.++|..++|||.|++++.+..  |.-  ...| |.|.-. ...+.   .+|..+.+-+.||.|..
T Consensus         4 iv~vG~~~vGKTsli~~~~~~~--f~~--~~~~-t~~~~~-~~~~~---~~~~~~~l~iwDt~G~~   60 (178)
T cd04131           4 IVVVGDVQCGKTALLQVFAKDC--YPE--TYVP-TVFENY-TASFE---IDEQRIELSLWDTSGSP   60 (178)
T ss_pred             EEEECCCCCCHHHHHHHHHhCc--CCC--CcCC-ceEEEE-EEEEE---ECCEEEEEEEEECCCch
Confidence            7899999999999999999765  642  2223 434321 12221   24667889999999953

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>PRK10869 recombination and repair protein; Provisional

Probab=94.84  E-value=11  Score=44.40  Aligned_cols=66  Identities=11%  Similarity=0.041  Sum_probs=36.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 004698          645 EEVEEWKRKYGVAVREAKAALEKAAIVQE------RTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEH  710 (736)
Q Consensus       645 ~E~~e~~~ky~~~~~e~kalle~~~~~~e------~~~e~~~~~~~~l~~e~~~~~~e~~~~~~~~~~k~~~  710 (736)
                      ..+..++|||-..+.+.-+-.++.....+      ..++.++.+++.++.++..+-.+.+..=+....+++.
T Consensus       306 ~~l~~L~rKyg~~~~~~~~~~~~l~~eL~~L~~~e~~l~~Le~e~~~l~~~l~~~A~~LS~~R~~aA~~l~~  377 (553)
T PRK10869        306 SKQISLARKHHVSPEELPQHHQQLLEEQQQLDDQEDDLETLALAVEKHHQQALETAQKLHQSRQRYAKELAQ  377 (553)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566788998766666555555554443      3455555555555555555554444433333333333

>cd01892 Miro2 Miro2 subfamily

Probab=94.83  E-value=0.061  Score=52.63  Aligned_cols=63  Identities=25%  Similarity=0.257  Sum_probs=40.7

Q ss_pred             CCEEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCC
Q 004698           69 EPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI  138 (736)
Q Consensus        69 ~~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~  138 (736)
                      .++.=|.|+|..++|||+|+|++++..  |.+.. . ..|.|.-.....+.   .+|..+.+.+.||.|-
T Consensus         2 ~~~~kv~~vG~~~vGKTsli~~~~~~~--f~~~~-~-~~T~~~~~~~~~~~---~~~~~~~l~~~d~~g~   64 (169)
T cd01892           2 RNVFLCFVLGAKGSGKSALLRAFLGRS--FSLNA-Y-SPTIKPRYAVNTVE---VYGQEKYLILREVGED   64 (169)
T ss_pred             CeEEEEEEECCCCCcHHHHHHHHhCCC--CCccc-C-CCccCcceEEEEEE---ECCeEEEEEEEecCCc
Confidence            356678999999999999999999876  75221 1 22333221111121   2466677888899874

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04149 Arf6 Arf6 subfamily

Probab=94.83  E-value=0.062  Score=52.57  Aligned_cols=54  Identities=22%  Similarity=0.141  Sum_probs=36.6

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      =|.|+|+.++|||+|+++|.+..  |.   .. ..|.|+-++..       .+.++.+.+.||.|..
T Consensus        11 kv~i~G~~~~GKTsli~~l~~~~--~~---~~-~~t~g~~~~~~-------~~~~~~~~l~Dt~G~~   64 (168)
T cd04149          11 RILMLGLDAAGKTTILYKLKLGQ--SV---TT-IPTVGFNVETV-------TYKNVKFNVWDVGGQD   64 (168)
T ss_pred             EEEEECcCCCCHHHHHHHHccCC--Cc---cc-cCCcccceEEE-------EECCEEEEEEECCCCH
Confidence            36799999999999999998644  42   11 22455543311       1234789999999964

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>PRK04004 translation initiation factor IF-2; Validated

Probab=94.80  E-value=0.094  Score=61.88  Aligned_cols=23  Identities=30%  Similarity=0.628  Sum_probs=21.1

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      +|+|+|...+|||+|+|.|.|..
T Consensus         8 ~V~i~Gh~~~GKTSLl~~l~~~~   30 (586)
T PRK04004          8 IVVVLGHVDHGKTTLLDKIRGTA   30 (586)
T ss_pred             EEEEECCCCCCHHHHHHHHhCcc
Confidence            69999999999999999998764

>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]

Probab=94.77  E-value=12  Score=44.30  Aligned_cols=164  Identities=16%  Similarity=0.183  Sum_probs=78.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh--
Q 004698          547 RYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKS--  624 (736)
Q Consensus       547 ~~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~yee~~~~~~~~~~~~~~~i~~L~~--  624 (736)
                      -.+..+.++..++..+.+.++.++.++.-..++...++..+..++++...-....+.......+..+.+....+..+.  
T Consensus       148 e~~~k~ae~~~lr~k~dss~s~~q~e~~~~~~~~~~~~s~l~~~eke~~~~~~ql~~~~q~~~~~~~~l~e~~~~~qq~a  227 (716)
T KOG4593|consen  148 EKEDKLAELGTLRNKLDSSLSELQWEVMLQEMRAKRLHSELQNEEKELDRQHKQLQEENQKIQELQASLEERADHEQQNA  227 (716)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            344555555666666666677777777777777777777666666665555555544444443333333333332222  


Q ss_pred             ----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhHHHHHHHHHHHHHHHhhHHHHH
Q 004698          625 ----RSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAA--IVQERTSKEMQQREDVLREEFSSTLAEKE  698 (736)
Q Consensus       625 ----k~~~~E~~~~~~~~q~~~~~~E~~e~~~ky~~~~~e~kalle~~~--~~~e~~~e~~~~~~~~l~~e~~~~~~e~~  698 (736)
                          +++..++. .........-=+|.+++.++|.+..++.+.+-+.-.  ....-.++..+.++.+++ .+.+.+...+
T Consensus       228 ~~~~ql~~~~el-e~i~~~~~dqlqel~~l~~a~~q~~ee~~~~re~~~tv~~LqeE~e~Lqskl~~~~-~l~~~~~~LE  305 (716)
T KOG4593|consen  228 ELEQQLSLSEEL-EAINKNMKDQLQELEELERALSQLREELATLRENRETVGLLQEELEGLQSKLGRLE-KLQSTLLGLE  305 (716)
T ss_pred             hHHHHHHhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH-HHHHHHhhHH
Confidence                22222111 111111112224556666777777776654433222  222233333333333332 2333344444


Q ss_pred             HHHHHHHHHHHHHH
Q 004698          699 EEMKEKATKIEHAE  712 (736)
Q Consensus       699 ~~~~~~~~k~~~~~  712 (736)
                      .+..++.+|+..-|
T Consensus       306 LeN~~l~tkL~rwE  319 (716)
T KOG4593|consen  306 LENEDLLTKLQRWE  319 (716)
T ss_pred             HHHHHHHHHHHHHH
Confidence            44445555554443

>cd04128 Spg1 Spg1p

Probab=94.76  E-value=0.054  Score=53.91  Aligned_cols=58  Identities=21%  Similarity=0.332  Sum_probs=41.3

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      |.++|..+.|||.|++++++..  |.-   .-..|.|+-.....+.   .+|..+.+-+.||.|..
T Consensus         3 i~vlG~~~vGKTsLi~~~~~~~--f~~---~~~~T~g~~~~~~~i~---~~~~~~~l~iwDt~G~~   60 (182)
T cd04128           3 IGLLGDAQIGKTSLMVKYVEGE--FDE---DYIQTLGVNFMEKTIS---IRGTEITFSIWDLGGQR   60 (182)
T ss_pred             EEEECCCCCCHHHHHHHHHhCC--CCC---CCCCccceEEEEEEEE---ECCEEEEEEEEeCCCch
Confidence            6789999999999999998765  632   1234667655433332   24667889999999853

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=94.74  E-value=8.1  Score=42.39  Aligned_cols=55  Identities=16%  Similarity=0.234  Sum_probs=29.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698          548 YDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYD  602 (736)
Q Consensus       548 ~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~ye  602 (736)
                      ..+.-.+++..+..+..+...|+.+..++...-..|..-+..+|.+..+++..-+
T Consensus       142 ~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ~s~~Qlk~~~~~L~~r~~  196 (499)
T COG4372         142 LTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLRSA  196 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444555555555555555555555555555555555555555554443

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=94.74  E-value=0.05  Score=55.89  Aligned_cols=60  Identities=15%  Similarity=0.186  Sum_probs=39.2

Q ss_pred             EEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      .=|.|+|..++|||+|+++++...  |.-.   ...|.|+-.+...+.   .++..+.+-++||.|..
T Consensus        14 ~Ki~vvG~~gvGKTsli~~~~~~~--f~~~---~~~tig~~~~~~~~~---~~~~~~~l~i~Dt~G~~   73 (219)
T PLN03071         14 FKLVIVGDGGTGKTTFVKRHLTGE--FEKK---YEPTIGVEVHPLDFF---TNCGKIRFYCWDTAGQE   73 (219)
T ss_pred             eEEEEECcCCCCHHHHHHHHhhCC--CCCc---cCCccceeEEEEEEE---ECCeEEEEEEEECCCch
Confidence            348899999999999999987654  4321   123555433322221   13445889999999964

>PRK10218 GTP-binding protein; Provisional

Probab=94.73  E-value=0.12  Score=61.00  Aligned_cols=69  Identities=14%  Similarity=0.340  Sum_probs=47.2

Q ss_pred             CEEEEEeeCCCCCChhHHHHHHhCCCCcccccCC---------CCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698           70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVAST---------HRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA  140 (736)
Q Consensus        70 ~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~---------~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~  140 (736)
                      .|--|+|+|...+|||+|+++|++....|.-...         ..-.+.||-+-......   +..++.+.++||+|...
T Consensus         4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i---~~~~~~inliDTPG~~d   80 (607)
T PRK10218          4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAI---KWNDYRINIVDTPGHAD   80 (607)
T ss_pred             CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEE---ecCCEEEEEEECCCcch
Confidence            4566999999999999999999986655643211         12346788776543322   23357889999999654


Q ss_pred             c
Q 004698          141 Y  141 (736)
Q Consensus       141 ~  141 (736)
                      +
T Consensus        81 f   81 (607)
T PRK10218         81 F   81 (607)
T ss_pred             h
Confidence            3

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=94.71  E-value=0.059  Score=58.99  Aligned_cols=51  Identities=24%  Similarity=0.152  Sum_probs=32.2

Q ss_pred             CCCeeEEEeCCCCceeeCHHHHHHhhc---cCCCEEEEEeeCCCCCChhHHHHHHhC
Q 004698           40 ARPIRLVYCDEKGKFRMDPEAVAALQL---VKEPIGVVSVCGRARQGKSFILNQLLG   93 (736)
Q Consensus        40 ~~pi~Lv~~d~~~~l~l~~eAl~~L~~---i~~~v~vVsv~G~~rtGKS~LlN~l~~   93 (736)
                      ++.|-+|+.+..   .-++.+-.++..   ..++-.||+|+|++++|||||++.|..
T Consensus        25 a~~it~~e~~~~---~~~~~~~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~   78 (332)
T PRK09435         25 ARAITLVESTRP---DHRALAQELLDALLPHTGNALRIGITGVPGVGKSTFIEALGM   78 (332)
T ss_pred             HHHHHHHhCCCc---hhhHHHHHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHH
Confidence            344566654321   111333344433   345667899999999999999999763

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=94.71  E-value=11  Score=43.96  Aligned_cols=25  Identities=36%  Similarity=0.334  Sum_probs=13.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698          628 AAEARLAAAREQALSAQEEVEEWKR  652 (736)
Q Consensus       628 ~~E~~~~~~~~q~~~~~~E~~e~~~  652 (736)
                      .+|..+..+...+..++.|+..|+.
T Consensus       239 ~Le~kL~~a~~~l~~Lq~El~~~~~  263 (522)
T PF05701_consen  239 DLESKLAEASAELESLQAELEAAKE  263 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444455555555555555555554

Several sequences in this family are described as being myosin heavy chain-like.

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=94.71  E-value=3.9  Score=44.34  Aligned_cols=40  Identities=15%  Similarity=0.076  Sum_probs=22.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 004698          552 INDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLK  591 (736)
Q Consensus       552 In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk  591 (736)
                      +.=+.+.++....+...+....+.+.+|++.|++....+.
T Consensus        11 L~IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~   50 (319)
T PF09789_consen   11 LLILSQELEKCQSERDQYKLMAEQLQERYQALKKKYRELI   50 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3334455555555555555555555555555555555544

>cd04134 Rho3 Rho3 subfamily

Probab=94.71  E-value=0.053  Score=54.10  Aligned_cols=57  Identities=26%  Similarity=0.235  Sum_probs=37.3

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      |.|+|+.++|||+|++++++..  |.-.  . ..|.|.-.... +   ..+|..+.+.++||.|..
T Consensus         3 ivivG~~~vGKTsli~~~~~~~--~~~~--~-~~t~~~~~~~~-i---~~~~~~~~l~i~Dt~G~~   59 (189)
T cd04134           3 VVVLGDGACGKTSLLNVFTRGY--FPQV--Y-EPTVFENYVHD-I---FVDGLHIELSLWDTAGQE   59 (189)
T ss_pred             EEEECCCCCCHHHHHHHHhcCC--CCCc--c-CCcceeeeEEE-E---EECCEEEEEEEEECCCCh
Confidence            6799999999999999999765  5321  1 12333221111 1   124566889999999964

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=94.69  E-value=0.093  Score=61.83  Aligned_cols=23  Identities=35%  Similarity=0.674  Sum_probs=21.5

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      +|+|+|....|||+|+|+|.+..
T Consensus         6 iV~IiG~~d~GKTSLln~l~~~~   28 (590)
T TIGR00491         6 IVSVLGHVDHGKTTLLDKIRGSA   28 (590)
T ss_pred             EEEEECCCCCCHHHHHHHHhccc
Confidence            69999999999999999999874

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=94.67  E-value=0.053  Score=52.90  Aligned_cols=52  Identities=21%  Similarity=0.277  Sum_probs=35.1

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCC
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI  138 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~  138 (736)
                      |.++|+.++|||+|+|+|.+.   |...   ...|.|+-...  +.     ...+.+.++||+|.
T Consensus         2 i~~~G~~~~GKTsl~~~l~~~---~~~~---~~~t~g~~~~~--~~-----~~~~~~~i~D~~G~   53 (167)
T cd04161           2 LLTVGLDNAGKTTLVSALQGE---IPKK---VAPTVGFTPTK--LR-----LDKYEVCIFDLGGG   53 (167)
T ss_pred             EEEECCCCCCHHHHHHHHhCC---CCcc---ccCcccceEEE--EE-----ECCEEEEEEECCCc
Confidence            689999999999999999875   3211   12345543221  21     12477899999994

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>cd04120 Rab12 Rab12 subfamily

Probab=94.67  E-value=0.056  Score=54.92  Aligned_cols=58  Identities=19%  Similarity=0.307  Sum_probs=40.6

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      |.|+|..++|||.|++++....  |.-   ..+.|.|+-.....+.   .+|..+.+-+.||.|..
T Consensus         3 vvvlG~~gVGKTSli~r~~~~~--f~~---~~~~Ti~~~~~~~~i~---~~~~~v~l~iwDtaGqe   60 (202)
T cd04120           3 VIIIGSRGVGKTSLMRRFTDDT--FCE---ACKSGVGVDFKIKTVE---LRGKKIRLQIWDTAGQE   60 (202)
T ss_pred             EEEECcCCCCHHHHHHHHHhCC--CCC---cCCCcceeEEEEEEEE---ECCEEEEEEEEeCCCch
Confidence            6799999999999999998765  632   1234555544333332   24667889999999953

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>cd04151 Arl1 Arl1 subfamily

Probab=94.66  E-value=0.076  Score=50.93  Aligned_cols=53  Identities=21%  Similarity=0.186  Sum_probs=34.2

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      |.|+|+.++|||+|+|+|....  |. . +  ..|.|.-+..  +     ++.++.+.++||+|..
T Consensus         2 v~lvG~~~~GKTsl~~~l~~~~--~~-~-~--~~t~~~~~~~--~-----~~~~~~~~i~Dt~G~~   54 (158)
T cd04151           2 ILILGLDNAGKTTILYRLQLGE--VV-T-T--IPTIGFNVET--V-----TYKNLKFQVWDLGGQT   54 (158)
T ss_pred             EEEECCCCCCHHHHHHHHccCC--Cc-C-c--CCccCcCeEE--E-----EECCEEEEEEECCCCH
Confidence            6789999999999999997543  32 1 1  1233432211  1     1234678999999964

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function

Probab=94.65  E-value=2.6  Score=45.17  Aligned_cols=25  Identities=12%  Similarity=0.090  Sum_probs=12.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698          645 EEVEEWKRKYGVAVREAKAALEKAA  669 (736)
Q Consensus       645 ~E~~e~~~ky~~~~~e~kalle~~~  669 (736)
                      --+..+++|.+-+--|.+++|+=+.
T Consensus       201 ~yI~~LEsKVqDLm~EirnLLQle~  225 (401)
T PF06785_consen  201 AYIGKLESKVQDLMYEIRNLLQLES  225 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            3344445555555555555555444

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=94.63  E-value=0.058  Score=52.73  Aligned_cols=57  Identities=19%  Similarity=0.278  Sum_probs=37.5

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      |.|+|+.++|||+|++.+++..  |..  ...|.+..++-+  .+.   .+|..+.+-++||+|..
T Consensus         3 ~~i~G~~~~GKtsl~~~~~~~~--~~~--~~~~t~~~~~~~--~~~---~~~~~~~~~i~Dt~G~~   59 (173)
T cd04130           3 CVLVGDGAVGKTSLIVSYTTNG--YPT--EYVPTAFDNFSV--VVL---VDGKPVRLQLCDTAGQD   59 (173)
T ss_pred             EEEECCCCCCHHHHHHHHHhCC--CCC--CCCCceeeeeeE--EEE---ECCEEEEEEEEECCCCh
Confidence            6799999999999999998754  532  122222223322  222   23556788999999964

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=94.63  E-value=0.053  Score=65.59  Aligned_cols=27  Identities=44%  Similarity=0.866  Sum_probs=23.8

Q ss_pred             CCEEEEEeeCCCCCChhHHHHHHhCCC
Q 004698           69 EPIGVVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        69 ~~v~vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      ..+..|+|+|.+.+|||+|+|+|+|..
T Consensus       273 ~~~~~V~IvG~~nvGKSSL~n~l~~~~  299 (712)
T PRK09518        273 KAVGVVAIVGRPNVGKSTLVNRILGRR  299 (712)
T ss_pred             ccCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            345679999999999999999999875

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=94.61  E-value=3.4  Score=49.99  Aligned_cols=30  Identities=17%  Similarity=0.340  Sum_probs=21.2

Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 004698          686 LREEFSSTLAEKEEEMKEKATKIEHAEQCL  715 (736)
Q Consensus       686 l~~e~~~~~~e~~~~~~~~~~k~~~~~~~~  715 (736)
                      -+..++++|.+-..+|+++..++.+..+++
T Consensus       686 Q~~~I~~iL~~~~~~I~~~v~~ik~i~~~~  715 (717)
T PF10168_consen  686 QKRTIKEILKQQGEEIDELVKQIKNIKKIV  715 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            345667777777777888888877766654

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]

Probab=94.60  E-value=13  Score=43.99  Aligned_cols=8  Identities=13%  Similarity=0.177  Sum_probs=2.9

Q ss_pred             HHHHHHHH
Q 004698          703 EKATKIEH  710 (736)
Q Consensus       703 ~~~~k~~~  710 (736)
                      .+++|+.+
T Consensus       286 ~Lqskl~~  293 (716)
T KOG4593|consen  286 GLQSKLGR  293 (716)
T ss_pred             HHHHHHHH
Confidence            33333333

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=94.59  E-value=0.13  Score=50.70  Aligned_cols=56  Identities=21%  Similarity=0.207  Sum_probs=40.5

Q ss_pred             CEEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCC
Q 004698           70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI  138 (736)
Q Consensus        70 ~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~  138 (736)
                      +=.=|.|+|+.++|||+|+++|.+..  +..   . ..|.|.-+...++       .++.+.+.|..|-
T Consensus        13 ~~~~ililGl~~sGKTtll~~l~~~~--~~~---~-~pT~g~~~~~i~~-------~~~~~~~~d~gG~   68 (175)
T PF00025_consen   13 KEIKILILGLDGSGKTTLLNRLKNGE--ISE---T-IPTIGFNIEEIKY-------KGYSLTIWDLGGQ   68 (175)
T ss_dssp             SEEEEEEEESTTSSHHHHHHHHHSSS--EEE---E-EEESSEEEEEEEE-------TTEEEEEEEESSS
T ss_pred             cEEEEEEECCCccchHHHHHHhhhcc--ccc---c-Ccccccccceeee-------CcEEEEEEecccc
Confidence            33347899999999999999998653  221   2 2377887776554       2377899999984

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>PRK09866 hypothetical protein; Provisional

Probab=94.59  E-value=0.065  Score=62.64  Aligned_cols=57  Identities=25%  Similarity=0.365  Sum_probs=36.2

Q ss_pred             EEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccc--eEEeeccccccccCCCCceEEEEeecCCC
Q 004698           71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTK--GLWLWSAPLKRTALDGTEYNLLLLDSEGI  138 (736)
Q Consensus        71 v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~--Giw~w~~p~~~~~~~g~~~~v~llDteG~  138 (736)
                      -.+|+|+|+.++|||+|+|.|+|.. -++.+  ..++|.  ++-.|. |       |....+++.||-|+
T Consensus        69 ~~~valvG~sgaGKSTLiNaL~G~~-Vlpt~--~~~~t~lpT~i~~~-p-------g~re~~L~~dtvgf  127 (741)
T PRK09866         69 EMVLAIVGTMKAGKSTTINAIVGTE-VLPNR--NRPMTALPTLIRHT-P-------GQKEPVLHFSHVAP  127 (741)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCc-cccCC--CcccccccEEEEec-C-------CcCceeeecCCccc
Confidence            3689999999999999999999864 22222  223321  222332 2       22345677888776

>cd04129 Rho2 Rho2 subfamily

Probab=94.59  E-value=0.075  Score=52.86  Aligned_cols=58  Identities=22%  Similarity=0.285  Sum_probs=36.4

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA  140 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~  140 (736)
                      |+|+|+.++|||+|+|+|.+..  |.-  ...+ |.+..... ++.   .+|..+.+.++||.|...
T Consensus         4 i~ivG~~g~GKStLl~~l~~~~--~~~--~~~~-t~~~~~~~-~~~---~~~~~~~l~i~Dt~g~~~   61 (187)
T cd04129           4 LVIVGDGACGKTSLLSVFTLGE--FPE--EYHP-TVFENYVT-DCR---VDGKPVQLALWDTAGQEE   61 (187)
T ss_pred             EEEECCCCCCHHHHHHHHHhCC--CCc--ccCC-cccceEEE-EEE---ECCEEEEEEEEECCCChh
Confidence            7899999999999999998543  421  1112 32322221 221   134557788999999643

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>PF14915 CCDC144C: CCDC144C protein coiled-coil region

Probab=94.58  E-value=7.6  Score=41.38  Aligned_cols=75  Identities=20%  Similarity=0.267  Sum_probs=34.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698          524 EDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKY  601 (736)
Q Consensus       524 e~e~~~lk~~Le~~e~~~~e~~k~~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~y  601 (736)
                      .+++++++..++.....-.+-+++|-++|.-++...+++..   .+...-..++..+.....+|..|+.|.+-+..+.
T Consensus         5 q~eia~LrlEidtik~q~qekE~ky~ediei~Kekn~~Lqk---~lKLneE~ltkTi~qy~~QLn~L~aENt~L~SkL   79 (305)
T PF14915_consen    5 QDEIAMLRLEIDTIKNQNQEKEKKYLEDIEILKEKNDDLQK---SLKLNEETLTKTIFQYNGQLNVLKAENTMLNSKL   79 (305)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH---HHhhhHHHHHHHHHHHhhhHHHHHHHHHHHhHHH
Confidence            34444444444444444444445555555554444444432   2222333444444445555555555544444444

>cd01871 Rac1_like Rac1-like subfamily

Probab=94.52  E-value=0.069  Score=52.61  Aligned_cols=57  Identities=25%  Similarity=0.300  Sum_probs=37.3

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      |.|+|..++|||+|+.++++..  |.-  ...|.....+.+  .+   ..+|..+.+.++||.|..
T Consensus         4 i~iiG~~~vGKSsli~~~~~~~--f~~--~~~~t~~~~~~~--~~---~~~~~~~~l~i~Dt~G~~   60 (174)
T cd01871           4 CVVVGDGAVGKTCLLISYTTNA--FPG--EYIPTVFDNYSA--NV---MVDGKPVNLGLWDTAGQE   60 (174)
T ss_pred             EEEECCCCCCHHHHHHHHhcCC--CCC--cCCCcceeeeEE--EE---EECCEEEEEEEEECCCch
Confidence            6899999999999999998754  531  112222222222  11   135666889999999964

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>COG1160 Predicted GTPases [General function prediction only]

Probab=94.51  E-value=0.16  Score=57.03  Aligned_cols=101  Identities=23%  Similarity=0.358  Sum_probs=55.4

Q ss_pred             EEEEEeeCCCCCChhHHHHHHhCCCCc--ccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcccCC---C-
Q 004698           71 IGVVSVCGRARQGKSFILNQLLGRSSG--FQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYDQ---T-  144 (736)
Q Consensus        71 v~vVsv~G~~rtGKS~LlN~l~~~~~g--F~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~~~---~-  144 (736)
                      ..=|+|+|.+..|||+|+|.|+|....  ..+.+|+.-.-..-|-|         +|+  .+.|+||-|+---.+   + 
T Consensus       178 ~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~---------~~~--~~~liDTAGiRrk~ki~e~~  246 (444)
T COG1160         178 PIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFER---------DGR--KYVLIDTAGIRRKGKITESV  246 (444)
T ss_pred             ceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEE---------CCe--EEEEEECCCCCcccccccce
Confidence            345999999999999999999997521  12222222112233444         243  478899999842111   1 


Q ss_pred             Cccc--hHHHHHhhhccceEEEccCCCCchHHhhhhHHHH
Q 004698          145 GTYS--TQIFSLAVLLSSMFIYNQMGGIDESAIDRLSLVT  182 (736)
Q Consensus       145 ~~~d--~~IFaLa~LLSS~~IyN~~g~i~e~~l~~L~~v~  182 (736)
                      ..+.  -.+=++.-.=.-++|.+-...+.++++.-+.++.
T Consensus       247 E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~  286 (444)
T COG1160         247 EKYSVARTLKAIERADVVLLVIDATEGISEQDLRIAGLIE  286 (444)
T ss_pred             EEEeehhhHhHHhhcCEEEEEEECCCCchHHHHHHHHHHH
Confidence            1111  1122222211223556666677777776555554

>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed

Probab=94.45  E-value=9  Score=41.66  Aligned_cols=161  Identities=16%  Similarity=0.248  Sum_probs=90.2

Q ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-------HHHHHHHHHH
Q 004698          516 LMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLRE-------KSSSLSKTVD  588 (736)
Q Consensus       516 L~~k~es~e~e~~~lk~~Le~~e~~~~e~~k~~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~-------r~~~L~~~le  588 (736)
                      +......+.+++..+..+++.-+.+....-+.-+-.+.-....++........-..+.....+       ++..+...--
T Consensus       133 ~~~eN~~L~eKlK~l~eQye~rE~~~~~~~k~keLE~Ql~~AKl~q~~~~~~~e~~k~~~~~~~~l~~~~~~~~~~~~E~  212 (309)
T PF09728_consen  133 LREENEELREKLKSLIEQYELREEHFEKLLKQKELEVQLAEAKLEQQQEEAEQEKEKAKQEKEILLEEAAQVQTLKETEK  212 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444555555555554444444443333333333333344444444344444444444       6666666667


Q ss_pred             HHHHHHHHHHHHH---HHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698          589 SLKNEISDWKRKY---DQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAAL  665 (736)
Q Consensus       589 ~lk~e~~e~~~~y---ee~~~~~~~~~~~~~~~i~~L~~k~~~~E~~~~~~~~q~~~~~~E~~e~~~ky~~~~~e~kall  665 (736)
                      .++.+++-|.-+|   ++++++.+..-..|+.+|+.+..++..+              .+|...|++||+..-.   +++
T Consensus       213 ~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kkl--------------EKE~~~~k~k~e~~n~---~l~  275 (309)
T PF09728_consen  213 ELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKL--------------EKENQTWKSKWEKSNK---ALI  275 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHhH---HHH
Confidence            7777788888777   6688888888889999998777755554              4567788888887654   333


Q ss_pred             HHHH--HHHHHhhHHHHHHHHHHHHHHHhh
Q 004698          666 EKAA--IVQERTSKEMQQREDVLREEFSST  693 (736)
Q Consensus       666 e~~~--~~~e~~~e~~~~~~~~l~~e~~~~  693 (736)
                      +-+.  ......++....+.+.|+.=.+.+
T Consensus       276 ~m~eer~~~~~~~~~~~~k~~kLe~LcRaL  305 (309)
T PF09728_consen  276 EMAEERQKLEKELEKLKKKIEKLEKLCRAL  305 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3322  223344444555555554444443

It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].

>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans

Probab=94.45  E-value=2.1  Score=41.78  Aligned_cols=69  Identities=20%  Similarity=0.253  Sum_probs=49.6

Q ss_pred             HhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004698          607 KQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERT  675 (736)
Q Consensus       607 ~~~~~~~~~~~~i~~L~~k~~~~E~~~~~~~~q~~~~~~E~~e~~~ky~~~~~e~kalle~~~~~~e~~  675 (736)
                      ..+.+..++.++++.|+...+.++..+..+..+...+...-.+|+++|+.+..+.+.++-.-....++.
T Consensus        86 ~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~~e~~~l~er~~e~l~~~~e~ver~  154 (158)
T PF09744_consen   86 QWRQERKDLQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAELKKEYNRLHERERELLRKLKEHVERQ  154 (158)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344445566677777777777777777777777777777777888999988888887777776666643

Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.

>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins

Probab=94.39  E-value=0.051  Score=53.18  Aligned_cols=46  Identities=20%  Similarity=0.316  Sum_probs=27.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhHHHH
Q 004698          647 VEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEK  697 (736)
Q Consensus       647 ~~e~~~ky~~~~~e~kalle~~~~~~e~~~e~~~~~~~~l~~e~~~~~~e~  697 (736)
                      ++|+..||++++++. |+||..+.    +.|.++.+.++|++|++++++|+
T Consensus         2 LeD~EsklN~AIERn-alLE~ELd----EKE~L~~~~QRLkDE~RDLKqEl   47 (166)
T PF04880_consen    2 LEDFESKLNQAIERN-ALLESELD----EKENLREEVQRLKDELRDLKQEL   47 (166)
T ss_dssp             HHHHHHHHHHHHHHH-HHHHHHHH----HHHHHHHCH--------------
T ss_pred             HHHHHHHHHHHHHHh-HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence            579999999999988 99999883    35678889999999999999877

Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=94.38  E-value=8.6  Score=41.12  Aligned_cols=171  Identities=16%  Similarity=0.257  Sum_probs=80.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHH------HHHHhhH
Q 004698          547 RYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDW----------KRKYDQ------VLTKQKA  610 (736)
Q Consensus       547 ~~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e~~e~----------~~~yee------~~~~~~~  610 (736)
                      .+-+.++.++...+.+-.++..|..+.+.+..+++.|-+.++.++......          ++.+++      +..-.-.
T Consensus        52 E~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e~~~~~~~~~~~~~~ler~i~~Le~~~~T~~L~~e  131 (294)
T COG1340          52 ELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKRNEFNLGGRSIKSLEREIERLEKKQQTSVLTPE  131 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHHHhcCCChH
Confidence            345555556666666666667777777777777777777766666555433          222211      1111111


Q ss_pred             HHHHHHHHHHHHhhhhHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 004698          611 MEDQVCSEIEVLKSRSTAAEAR------LAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQRED  684 (736)
Q Consensus       611 ~~~~~~~~i~~L~~k~~~~E~~------~~~~~~q~~~~~~E~~e~~~ky~~~~~e~kalle~~~~~~e~~~e~~~~~~~  684 (736)
                      ....+-+.|..|+..+...+..      +.....+++..+.++.+..-+.+.+..++..-=++-+... +...+...+-+
T Consensus       132 ~E~~lvq~I~~L~k~le~~~k~~e~~~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~-~~~De~Rkead  210 (294)
T COG1340         132 EERELVQKIKELRKELEDAKKALEENEKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLF-EEADELRKEAD  210 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence            2225555566666555555433      2333344444444444444444444444422222221111 33444445555


Q ss_pred             HHHHHHHhhHHHHHH---HHHHHHHHHHHHHHHHhhH
Q 004698          685 VLREEFSSTLAEKEE---EMKEKATKIEHAEQCLTTL  718 (736)
Q Consensus       685 ~l~~e~~~~~~e~~~---~~~~~~~k~~~~~~~~~~~  718 (736)
                      .+++++=.....++.   ++..++.+|+..++.+..|
T Consensus       211 e~he~~ve~~~~~~e~~ee~~~~~~elre~~k~ik~l  247 (294)
T COG1340         211 ELHEEFVELSKKIDELHEEFRNLQNELRELEKKIKAL  247 (294)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555544433333322   2444455555544444433

>PRK05433 GTP-binding protein LepA; Provisional

Probab=94.37  E-value=0.11  Score=61.51  Aligned_cols=103  Identities=18%  Similarity=0.293  Sum_probs=58.0

Q ss_pred             EEEEEeeCCCCCChhHHHHHHhCCCCcccc---cCCC-----CCccceEEeeccccc--cccCCCCceEEEEeecCCCcc
Q 004698           71 IGVVSVCGRARQGKSFILNQLLGRSSGFQV---ASTH-----RPCTKGLWLWSAPLK--RTALDGTEYNLLLLDSEGIDA  140 (736)
Q Consensus        71 v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~---~~~~-----~~~T~Giw~w~~p~~--~~~~~g~~~~v~llDteG~~~  140 (736)
                      +-=|+|+|....|||+|+++|+.....+.-   +.+.     .-.+.||=+....+.  ...++|+.+.+-|+||+|..+
T Consensus         7 iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~d   86 (600)
T PRK05433          7 IRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVD   86 (600)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHH
Confidence            445789999999999999999865322211   1111     011345544332221  112357778899999999754


Q ss_pred             cCCCCccchHHHHHhhhccceEEEccCCCCchHHhhhh
Q 004698          141 YDQTGTYSTQIFSLAVLLSSMFIYNQMGGIDESAIDRL  178 (736)
Q Consensus       141 ~~~~~~~d~~IFaLa~LLSS~~IyN~~g~i~e~~l~~L  178 (736)
                      +.     ..+.-++...=.-++|+.....+..+.+..+
T Consensus        87 F~-----~~v~~sl~~aD~aILVVDas~gv~~qt~~~~  119 (600)
T PRK05433         87 FS-----YEVSRSLAACEGALLVVDASQGVEAQTLANV  119 (600)
T ss_pred             HH-----HHHHHHHHHCCEEEEEEECCCCCCHHHHHHH
Confidence            32     1122234433334667777666665555444

>COG0218 Predicted GTPase [General function prediction only]

Probab=94.35  E-value=0.25  Score=49.81  Aligned_cols=102  Identities=17%  Similarity=0.183  Sum_probs=60.3

Q ss_pred             CEEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcccCCCCcc-c
Q 004698           70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYDQTGTY-S  148 (736)
Q Consensus        70 ~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~~~~~~~-d  148 (736)
                      ...=|+.+|....|||+|+|.|+|+..--.++.|.. .|.=|=.+.       .++   .+.|+|.||.|-.....+. +
T Consensus        23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPG-rTq~iNff~-------~~~---~~~lVDlPGYGyAkv~k~~~e   91 (200)
T COG0218          23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPG-RTQLINFFE-------VDD---ELRLVDLPGYGYAKVPKEVKE   91 (200)
T ss_pred             CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCC-ccceeEEEE-------ecC---cEEEEeCCCcccccCCHHHHH
Confidence            344588999999999999999999753333443322 244443322       122   1778999999743332211 1


Q ss_pred             hH---HHH----HhhhccceEEEccCCCCchHHhhhhHHHH
Q 004698          149 TQ---IFS----LAVLLSSMFIYNQMGGIDESAIDRLSLVT  182 (736)
Q Consensus       149 ~~---IFa----La~LLSS~~IyN~~g~i~e~~l~~L~~v~  182 (736)
                      .|   |.-    =+.|---+++.-....+.+.|.+.+.++.
T Consensus        92 ~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~  132 (200)
T COG0218          92 KWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLL  132 (200)
T ss_pred             HHHHHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHH
Confidence            11   111    02234456777777888887876665544

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=94.34  E-value=0.14  Score=51.91  Aligned_cols=22  Identities=27%  Similarity=0.450  Sum_probs=20.2

Q ss_pred             EEEeeCCCCCChhHHHHHHhCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~   94 (736)
                      -|+|+|..++|||+|+..|.+.
T Consensus         2 ~i~~~g~~~~GKttL~~~l~~~   23 (203)
T cd01888           2 NIGTIGHVAHGKSTLVKALSGV   23 (203)
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4899999999999999999876

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family

Probab=94.33  E-value=3.1  Score=46.14  Aligned_cols=31  Identities=13%  Similarity=0.102  Sum_probs=22.6

Q ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698          517 MLKYRSIEDNMKLLKKQLEDSERYKSEYLKR  547 (736)
Q Consensus       517 ~~k~es~e~e~~~lk~~Le~~e~~~~e~~k~  547 (736)
                      +....-++.++..++..+++++..+.+|+.+
T Consensus       169 ~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~  199 (362)
T TIGR01010       169 KDTIAFAENEVKEAEQRLNATKAELLKYQIK  199 (362)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4455666777778888888888888888753

This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=94.32  E-value=0.091  Score=53.46  Aligned_cols=61  Identities=20%  Similarity=0.175  Sum_probs=39.8

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeec--cccccccCCCCceEEEEeecCCCc
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWS--APLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~--~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      |.++|..++|||+|++++.+..  |.-.   ...|.|.-+..  ..+....++|..+.+-+.||.|..
T Consensus         3 IvlvGd~gVGKTSLi~~~~~~~--f~~~---~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e   65 (202)
T cd04102           3 VLVVGDSGVGKSSLVHLICKNQ--VLGR---PSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSE   65 (202)
T ss_pred             EEEECCCCCCHHHHHHHHHcCC--CCCC---CCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCch
Confidence            7799999999999999999865  5321   12355532211  122111234667889999999953

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>smart00787 Spc7 Spc7 kinetochore protein

Probab=94.26  E-value=9.9  Score=41.39  Aligned_cols=13  Identities=23%  Similarity=0.427  Sum_probs=5.8

Q ss_pred             HHHHHHHHHHHHH
Q 004698          645 EEVEEWKRKYGVA  657 (736)
Q Consensus       645 ~E~~e~~~ky~~~  657 (736)
                      .|+..++++|+.+
T Consensus       271 ~Ei~~Lk~~~~~L  283 (312)
T smart00787      271 KEIEKLKEQLKLL  283 (312)
T ss_pred             HHHHHHHHHHHHH
Confidence            3444444444443

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=94.26  E-value=0.061  Score=53.41  Aligned_cols=53  Identities=25%  Similarity=0.292  Sum_probs=35.9

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      |.++|+.++|||+|++++....  |.   +..| |.|.-..  ++     ++.++.+.+.||+|..
T Consensus        20 v~lvG~~~vGKTsli~~~~~~~--~~---~~~~-T~~~~~~--~~-----~~~~~~~~l~D~~G~~   72 (182)
T PTZ00133         20 ILMVGLDAAGKTTILYKLKLGE--VV---TTIP-TIGFNVE--TV-----EYKNLKFTMWDVGGQD   72 (182)
T ss_pred             EEEEcCCCCCHHHHHHHHhcCC--cc---ccCC-ccccceE--EE-----EECCEEEEEEECCCCH
Confidence            7788999999999999996443  42   1223 5564432  11     1234789999999953

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=94.24  E-value=0.75  Score=50.07  Aligned_cols=82  Identities=13%  Similarity=0.185  Sum_probs=25.0

Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 004698          512 ERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLK  591 (736)
Q Consensus       512 e~~~L~~k~es~e~e~~~lk~~Le~~e~~~~e~~k~~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk  591 (736)
                      -+..+..+.+.++.+.+.+...++..+..     ......+.++.+.+..++.+...+..++..++.+...+.+++..++
T Consensus        10 l~~~l~~~~~~~~~E~~~Y~~fL~~l~~~-----~~~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le   84 (314)
T PF04111_consen   10 LLEQLDKQLEQAEKERDTYQEFLKKLEEE-----SDSEEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELE   84 (314)
T ss_dssp             -------------------------------------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555566666666666666666554411     2223444444555555555555555555555555555555555555


Q ss_pred             HHHHHHH
Q 004698          592 NEISDWK  598 (736)
Q Consensus       592 ~e~~e~~  598 (736)
                      .+..++.
T Consensus        85 ~e~~~l~   91 (314)
T PF04111_consen   85 EELEELD   91 (314)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5444444

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=94.24  E-value=0.051  Score=59.64  Aligned_cols=52  Identities=15%  Similarity=0.258  Sum_probs=36.5

Q ss_pred             EEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccce-EEeeccccccccCCCCceEEEEe
Q 004698           72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKG-LWLWSAPLKRTALDGTEYNLLLL  133 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~G-iw~w~~p~~~~~~~g~~~~v~ll  133 (736)
                      -+++++||.++||||||..|.|-.          +.|.| |++-+.++..-.|....+.+||=
T Consensus        32 ef~~lLGPSGcGKTTlLR~IAGfe----------~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ   84 (352)
T COG3842          32 EFVTLLGPSGCGKTTLLRMIAGFE----------QPSSGEILLDGEDITDVPPEKRPIGMVFQ   84 (352)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCC----------CCCCceEEECCEECCCCChhhcccceeec
Confidence            479999999999999999998753          34555 77766655443444444555543

>PRK12736 elongation factor Tu; Reviewed

Probab=94.22  E-value=0.11  Score=58.26  Aligned_cols=104  Identities=13%  Similarity=0.192  Sum_probs=54.5

Q ss_pred             CCEEEEEeeCCCCCChhHHHHHHhCCCC--------cccccC-CCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           69 EPIGVVSVCGRARQGKSFILNQLLGRSS--------GFQVAS-THRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        69 ~~v~vVsv~G~~rtGKS~LlN~l~~~~~--------gF~~~~-~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      .|..-|+|+|...+|||+|+++|++...        ++.+.. ...-...|+=+-.......   .....+.|+||+|..
T Consensus        10 k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~---~~~~~i~~iDtPGh~   86 (394)
T PRK12736         10 KPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYE---TEKRHYAHVDCPGHA   86 (394)
T ss_pred             CCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEec---CCCcEEEEEECCCHH
Confidence            4445599999999999999999997420        111000 0001122332222111111   123467899999953


Q ss_pred             ccCCCCccchHHHHHhhhccceEEEccCCCCchHHhhhhHH
Q 004698          140 AYDQTGTYSTQIFSLAVLLSSMFIYNQMGGIDESAIDRLSL  180 (736)
Q Consensus       140 ~~~~~~~~d~~IFaLa~LLSS~~IyN~~g~i~e~~l~~L~~  180 (736)
                      .+     ....+.+++..=.-++|+.....+..++.+++.+
T Consensus        87 ~f-----~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~  122 (394)
T PRK12736         87 DY-----VKNMITGAAQMDGAILVVAATDGPMPQTREHILL  122 (394)
T ss_pred             HH-----HHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHH
Confidence            11     1223444443334456666665566666655544

>cd04121 Rab40 Rab40 subfamily

Probab=94.20  E-value=0.086  Score=52.95  Aligned_cols=58  Identities=26%  Similarity=0.298  Sum_probs=40.1

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      |.|+|..+.|||+|+.++.+..  |.-   ..+.|.|+-+....+.   .+|..+.+-|+||.|..
T Consensus         9 ivviG~~~vGKTsll~~~~~~~--~~~---~~~~t~~~~~~~~~i~---~~~~~~~l~iwDt~G~~   66 (189)
T cd04121           9 FLLVGDSDVGKGEILASLQDGS--TES---PYGYNMGIDYKTTTIL---LDGRRVKLQLWDTSGQG   66 (189)
T ss_pred             EEEECCCCCCHHHHHHHHHcCC--CCC---CCCCcceeEEEEEEEE---ECCEEEEEEEEeCCCcH
Confidence            6699999999999999998754  531   1123555544333332   25667889999999964

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=94.20  E-value=0.052  Score=55.01  Aligned_cols=24  Identities=21%  Similarity=0.335  Sum_probs=21.8

Q ss_pred             EEEEeeCCCCCChhHHHHHHhCCC
Q 004698           72 GVVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      -+++|+|+.++|||+|++.|.|..
T Consensus        27 ~~~~i~G~nGsGKSTLl~~l~Gl~   50 (208)
T cd03268          27 EIYGFLGPNGAGKTTTMKIILGLI   50 (208)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCc
Confidence            479999999999999999999864

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=94.19  E-value=0.073  Score=55.24  Aligned_cols=23  Identities=26%  Similarity=0.485  Sum_probs=21.4

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      +++|+|+.|+||||||+.|.|..
T Consensus        30 ~~~i~G~nGsGKSTLl~~l~Gl~   52 (239)
T cd03296          30 LVALLGPSGSGKTTLLRLIAGLE   52 (239)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            79999999999999999999864

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd01874 Cdc42 Cdc42 subfamily

Probab=94.18  E-value=0.091  Score=51.79  Aligned_cols=57  Identities=25%  Similarity=0.293  Sum_probs=38.2

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      |.|+|..++|||+|++++.+..  |.-  ...| |.|.-... .+   ..+|..+.+.++||.|..
T Consensus         4 i~vvG~~~vGKTsl~~~~~~~~--f~~--~~~p-t~~~~~~~-~~---~~~~~~~~l~i~Dt~G~~   60 (175)
T cd01874           4 CVVVGDGAVGKTCLLISYTTNK--FPS--EYVP-TVFDNYAV-TV---MIGGEPYTLGLFDTAGQE   60 (175)
T ss_pred             EEEECCCCCCHHHHHHHHHcCC--CCC--CCCC-ceeeeeEE-EE---EECCEEEEEEEEECCCcc
Confidence            7899999999999999999765  631  1222 44432221 11   124566889999999964

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=94.17  E-value=0.075  Score=54.00  Aligned_cols=23  Identities=26%  Similarity=0.352  Sum_probs=21.4

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      +++|+|+.++|||+||+.|.|..
T Consensus        28 ~~~l~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03301          28 FVVLLGPSGCGKTTTLRMIAGLE   50 (213)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            69999999999999999999864

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=94.15  E-value=0.049  Score=57.29  Aligned_cols=23  Identities=30%  Similarity=0.433  Sum_probs=21.3

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      |++|+||.|+||||||..|.|-.
T Consensus        30 i~~iiGpNG~GKSTLLk~l~g~l   52 (258)
T COG1120          30 ITGILGPNGSGKSTLLKCLAGLL   52 (258)
T ss_pred             EEEEECCCCCCHHHHHHHHhccC
Confidence            79999999999999999999854

>PRK12735 elongation factor Tu; Reviewed

Probab=94.13  E-value=0.13  Score=57.72  Aligned_cols=26  Identities=19%  Similarity=0.265  Sum_probs=22.9

Q ss_pred             CCEEEEEeeCCCCCChhHHHHHHhCC
Q 004698           69 EPIGVVSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        69 ~~v~vVsv~G~~rtGKS~LlN~l~~~   94 (736)
                      .|..-|+|+|...+|||+|+|.|++.
T Consensus        10 ~~~~~i~iiGhvd~GKSTL~~~L~~~   35 (396)
T PRK12735         10 KPHVNVGTIGHVDHGKTTLTAAITKV   35 (396)
T ss_pred             CCeEEEEEECcCCCCHHHHHHHHHHh
Confidence            46667999999999999999999963

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.12  E-value=9.1  Score=40.42  Aligned_cols=28  Identities=29%  Similarity=0.350  Sum_probs=9.9

Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 004698          563 TSRINNLQGENISLREKSSSLSKTVDSL  590 (736)
Q Consensus       563 e~~~~~Le~k~~sl~~r~~~L~~~le~l  590 (736)
                      .++...++.+++.....+..|.++++.+
T Consensus        65 ~~k~~~~~~~i~~~~~eik~l~~eI~~~   92 (265)
T COG3883          65 QSKIDELQKEIDQSKAEIKKLQKEIAEL   92 (265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333333333

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=94.09  E-value=0.088  Score=53.35  Aligned_cols=62  Identities=27%  Similarity=0.338  Sum_probs=39.6

Q ss_pred             EEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCccc
Q 004698           72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAY  141 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~  141 (736)
                      .=|.|+|+.++|||+|+|+|.+..  |.-+   .+.|.|.-....-.   .+++..+.+.++||.|...+
T Consensus         6 ~kivv~G~~g~GKTtl~~~l~~~~--~~~~---~~~t~~~~~~~~~~---~~~~~~~~~~~~Dt~gq~~~   67 (219)
T COG1100           6 FKIVVLGDGGVGKTTLLNRLVGDE--FPEG---YPPTIGNLDPAKTI---EPYRRNIKLQLWDTAGQEEY   67 (219)
T ss_pred             EEEEEEcCCCccHHHHHHHHhcCc--Cccc---CCCceeeeeEEEEE---EeCCCEEEEEeecCCCHHHH
Confidence            348899999999999999999876  4321   12343433332211   11223577889999997543

>TIGR02977 phageshock_pspA phage shock protein A

Probab=94.07  E-value=8.2  Score=39.75  Aligned_cols=98  Identities=13%  Similarity=0.180  Sum_probs=50.9

Q ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 004698          505 LIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDK-KKLADDYTSRINNLQGENISLREKSSSL  583 (736)
Q Consensus       505 l~~~i~~e~~~L~~k~es~e~e~~~lk~~Le~~e~~~~e~~k~~e~~In~l-kk~~e~~e~~~~~Le~k~~sl~~r~~~L  583 (736)
                      .+..++..+...+..+..+......++.+++..+....+|+.+....+..= ..+-..+-.+...++.....+...+..+
T Consensus        32 ~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~~k~~~~~~~~~l~~~~~~~  111 (219)
T TIGR02977        32 IIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLARAALIEKQKAQELAEALERELAAV  111 (219)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444455556666666666666777777777777777776555444422 2222223334444444444444444444


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 004698          584 SKTVDSLKNEISDWKRKYD  602 (736)
Q Consensus       584 ~~~le~lk~e~~e~~~~ye  602 (736)
                      ...++.++..+.+++++++
T Consensus       112 ~~~v~~l~~~l~~L~~ki~  130 (219)
T TIGR02977       112 EETLAKLQEDIAKLQAKLA  130 (219)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            4444444444444444443

Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants

Probab=94.03  E-value=19  Score=43.83  Aligned_cols=15  Identities=0%  Similarity=0.105  Sum_probs=6.2

Q ss_pred             chhHHHHHHHHHHHH
Q 004698          458 SIDNVVKVLDGLISE  472 (736)
Q Consensus       458 ~~~~~~~~~~~ll~~  472 (736)
                      ++..|+..+.-.++.
T Consensus       534 dLE~fieE~s~tLdw  548 (769)
T PF05911_consen  534 DLERFIEEFSLTLDW  548 (769)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            344444444444433

The function of this family is unknown.

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=94.02  E-value=18  Score=43.48  Aligned_cols=52  Identities=10%  Similarity=0.185  Sum_probs=33.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698          550 DAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKY  601 (736)
Q Consensus       550 ~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~y  601 (736)
                      +.+..+.+.++.+..++..++.++..+..++..+.++++.++.++.......
T Consensus       421 e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  472 (650)
T TIGR03185       421 EQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDEKTKQK  472 (650)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566666666666666777777777777777777777666666665544433

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=94.01  E-value=0.051  Score=58.67  Aligned_cols=36  Identities=22%  Similarity=0.348  Sum_probs=28.7

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccce-EEeecccc
Q 004698           73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKG-LWLWSAPL  118 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~G-iw~w~~p~  118 (736)
                      +++++|+.|+||||||+.|.|..          +.+.| ||+++.++
T Consensus        30 i~~l~G~NGaGKTTLl~~l~Gl~----------~~~~G~i~i~g~~~   66 (301)
T TIGR03522        30 IVGFLGPNGAGKSTTMKIITGYL----------PPDSGSVQVCGEDV   66 (301)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC----------CCCceEEEECCEEc
Confidence            79999999999999999999874          12344 77777654

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=94.00  E-value=0.038  Score=50.59  Aligned_cols=22  Identities=32%  Similarity=0.511  Sum_probs=20.4

Q ss_pred             EEEeeCCCCCChhHHHHHHhCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~   94 (736)
                      ||.|+|+++|||||+.+.|...
T Consensus         1 vI~I~G~~gsGKST~a~~La~~   22 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAER   22 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            7999999999999999999865

...

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=93.98  E-value=0.049  Score=61.45  Aligned_cols=23  Identities=22%  Similarity=0.267  Sum_probs=21.0

Q ss_pred             CEEEEEeeCCCCCChhHHHHHHh
Q 004698           70 PIGVVSVCGRARQGKSFILNQLL   92 (736)
Q Consensus        70 ~v~vVsv~G~~rtGKS~LlN~l~   92 (736)
                      +-.||.++|++|+||||++..|.
T Consensus        99 ~~~vi~lvG~~GvGKTTtaaKLA  121 (429)
T TIGR01425        99 KQNVIMFVGLQGSGKTTTCTKLA  121 (429)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHH
Confidence            45799999999999999999987

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=93.97  E-value=18  Score=43.25  Aligned_cols=30  Identities=23%  Similarity=0.353  Sum_probs=15.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698          632 RLAAAREQALSAQEEVEEWKRKYGVAVREA  661 (736)
Q Consensus       632 ~~~~~~~q~~~~~~E~~e~~~ky~~~~~e~  661 (736)
                      .+..+++.++..-.-..|+..|.+.+...+
T Consensus       338 ~LlEarrk~egfddk~~eLEKkrd~al~dv  367 (1265)
T KOG0976|consen  338 ALLEARRKAEGFDDKLNELEKKRDMALMDV  367 (1265)
T ss_pred             HHHHHHHhhcchhHHHHHHHHHHHHHHHhH
Confidence            444445555555555555555555554444

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=93.96  E-value=0.13  Score=49.69  Aligned_cols=53  Identities=21%  Similarity=0.216  Sum_probs=34.9

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      |.++|..++|||+|++++....  |. .  . ..|.|+-+..  +     ....+.+.|.||+|.+
T Consensus         3 v~~~G~~~~GKTsli~~l~~~~--~~-~--~-~pt~g~~~~~--~-----~~~~~~~~l~D~~G~~   55 (159)
T cd04150           3 ILMVGLDAAGKTTILYKLKLGE--IV-T--T-IPTIGFNVET--V-----EYKNISFTVWDVGGQD   55 (159)
T ss_pred             EEEECCCCCCHHHHHHHHhcCC--Cc-c--c-CCCCCcceEE--E-----EECCEEEEEEECCCCH
Confidence            6789999999999999996543  43 1  1 2344542211  1     1234789999999964

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>COG2262 HflX GTPases [General function prediction only]

Probab=93.92  E-value=0.08  Score=58.51  Aligned_cols=56  Identities=34%  Similarity=0.492  Sum_probs=45.3

Q ss_pred             CCEEEEEeeCCCCCChhHHHHHHhCCC-----CcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCC
Q 004698           69 EPIGVVSVCGRARQGKSFILNQLLGRS-----SGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI  138 (736)
Q Consensus        69 ~~v~vVsv~G~~rtGKS~LlN~l~~~~-----~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~  138 (736)
                      .++-.||++|-+.+|||+|+|.|.|..     .-|   .|-.|.|+-|-+++         |  ..++|-||=||
T Consensus       190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LF---ATLdpttR~~~l~~---------g--~~vlLtDTVGF  250 (411)
T COG2262         190 SGIPLVALVGYTNAGKSTLFNALTGADVYVADQLF---ATLDPTTRRIELGD---------G--RKVLLTDTVGF  250 (411)
T ss_pred             cCCCeEEEEeeccccHHHHHHHHhccCeecccccc---ccccCceeEEEeCC---------C--ceEEEecCccC
Confidence            578899999999999999999999753     235   35678888888864         2  35899999998

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=93.89  E-value=0.016  Score=70.06  Aligned_cols=82  Identities=17%  Similarity=0.262  Sum_probs=0.0

Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 004698          513 RSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKN  592 (736)
Q Consensus       513 ~~~L~~k~es~e~e~~~lk~~Le~~e~~~~e~~k~~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk~  592 (736)
                      ...++.++..++.++..++...+.       .+-.++..++.++..++.-..+...|+.+...+..+...+.+.++..+.
T Consensus        63 ~~~~k~~l~~Le~e~~~~~~e~~~-------~~~~le~~~~~l~~~~~~~~~~~~ele~~~~~l~~~~~~le~el~~~~e  135 (722)
T PF05557_consen   63 LIELKAQLNQLEYELEQLKQEHER-------AQLELEKELRELQRQLEREFKRNQELEARLKQLEEREEELEEELEEAEE  135 (722)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444555554444444444433       2223444444444444444444445555555555555555555555554


Q ss_pred             HHHHHHHHH
Q 004698          593 EISDWKRKY  601 (736)
Q Consensus       593 e~~e~~~~y  601 (736)
                      +....+...
T Consensus       136 ~~~~~k~~l  144 (722)
T PF05557_consen  136 ELEQLKRKL  144 (722)
T ss_dssp             ---------
T ss_pred             HHHHHHHHH
Confidence            444444444

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=93.88  E-value=0.046  Score=51.95  Aligned_cols=22  Identities=32%  Similarity=0.555  Sum_probs=20.1

Q ss_pred             EEEeeCCCCCChhHHHHHHhCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~   94 (736)
                      +|.|+||.++|||+|++.|.+.
T Consensus         1 ~i~i~GpsGsGKstl~~~L~~~   22 (137)
T cd00071           1 LIVLSGPSGVGKSTLLKRLLEE   22 (137)
T ss_pred             CEEEECCCCCCHHHHHHHHHhc
Confidence            4789999999999999999976

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription

Probab=93.88  E-value=8.8  Score=39.39  Aligned_cols=19  Identities=11%  Similarity=0.064  Sum_probs=7.0

Q ss_pred             HHHHHHHHhhHHHHHHHHH
Q 004698          565 RINNLQGENISLREKSSSL  583 (736)
Q Consensus       565 ~~~~Le~k~~sl~~r~~~L  583 (736)
                      ....++.+++.+......+
T Consensus        52 ~~~~le~~~~~~~~~~~~~   70 (221)
T PF04012_consen   52 NQKRLERKLDEAEEEAEKW   70 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333

The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=93.85  E-value=0.057  Score=56.24  Aligned_cols=23  Identities=17%  Similarity=0.315  Sum_probs=21.4

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      +++|+|+.++|||+||+.|+|..
T Consensus        31 ~~~i~G~nGsGKSTLl~~l~Gl~   53 (241)
T PRK14250         31 IYTIVGPSGAGKSTLIKLINRLI   53 (241)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            69999999999999999999864

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=93.81  E-value=0.044  Score=51.33  Aligned_cols=23  Identities=35%  Similarity=0.546  Sum_probs=21.6

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      +++|+|+.++|||+|++.|.|..
T Consensus        13 ~~~i~G~nGsGKStLl~~l~g~~   35 (137)
T PF00005_consen   13 IVAIVGPNGSGKSTLLKALAGLL   35 (137)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEEEEccCCCccccceeeecccc
Confidence            68999999999999999999875

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=93.77  E-value=0.099  Score=51.44  Aligned_cols=54  Identities=20%  Similarity=0.156  Sum_probs=36.6

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      =|.++|+.++|||+|+++|....  |.  + . ..|.|+-+....       ...+.+.+.||+|..
T Consensus        15 ki~l~G~~~~GKTsL~~~~~~~~--~~--~-~-~~t~~~~~~~~~-------~~~~~l~l~D~~G~~   68 (175)
T smart00177       15 RILMVGLDAAGKTTILYKLKLGE--SV--T-T-IPTIGFNVETVT-------YKNISFTVWDVGGQD   68 (175)
T ss_pred             EEEEEcCCCCCHHHHHHHHhcCC--CC--C-c-CCccccceEEEE-------ECCEEEEEEECCCCh
Confidence            48899999999999999996433  41  1 1 235565443211       124789999999953

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>PF15397 DUF4618: Domain of unknown function (DUF4618)

Probab=93.70  E-value=11  Score=39.80  Aligned_cols=58  Identities=12%  Similarity=0.160  Sum_probs=22.7

Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhhh
Q 004698          669 AIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKVSFF  727 (736)
Q Consensus       669 ~~~~e~~~e~~~~~~~~l~~e~~~~~~e~~~~~~~~~~k~~~~~~~~~~~~~~l~~~~~  727 (736)
                      ....+..+-........+..++-...+++ .++++...+|+...+.|..-.-+-++-.|
T Consensus       174 ~~~~~~~l~~~~~~N~~m~kei~~~re~i-~el~e~I~~L~~eV~~L~~~~~~~Re~iF  231 (258)
T PF15397_consen  174 QSPMQPALLQRTLENQVMQKEIVQFREEI-DELEEEIPQLRAEVEQLQAQAQDPREVIF  231 (258)
T ss_pred             HhhchHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhcchHHHhh
Confidence            33333333333334444444444443333 22333333333333334433334444444

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=93.68  E-value=10  Score=40.45  Aligned_cols=77  Identities=23%  Similarity=0.336  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698          579 KSSSLSKTVDSLKNEISDWKRKYDQVLTK----QKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKY  654 (736)
Q Consensus       579 r~~~L~~~le~lk~e~~e~~~~yee~~~~----~~~~~~~~~~~i~~L~~k~~~~E~~~~~~~~q~~~~~~E~~e~~~ky  654 (736)
                      ++..+...+..++.+...++.+.++.+..    ........+.++..++.++..+..++...+++.+..+.++.+.+...
T Consensus        21 ~L~~~~~~l~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l  100 (302)
T PF10186_consen   21 RLLELRSELQQLKEENEELRRRIEEILESDSNGQLLEIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESL  100 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46666666777777777777777666652    33334566666667777666666666666666666666654444433


Q ss_pred             H
Q 004698          655 G  655 (736)
Q Consensus       655 ~  655 (736)
                      +
T Consensus       101 ~  101 (302)
T PF10186_consen  101 E  101 (302)
T ss_pred             H
Confidence            3

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=93.68  E-value=0.18  Score=59.45  Aligned_cols=23  Identities=26%  Similarity=0.587  Sum_probs=21.2

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      +|+++|....|||+|+|.|.|..
T Consensus         2 ~I~iiG~~d~GKTTLi~aLtg~~   24 (581)
T TIGR00475         2 IIATAGHVDHGKTTLLKALTGIA   24 (581)
T ss_pred             EEEEECCCCCCHHHHHHHHhCcc
Confidence            79999999999999999999753

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional

Probab=93.66  E-value=13  Score=44.47  Aligned_cols=80  Identities=18%  Similarity=0.171  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 004698          629 AEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKI  708 (736)
Q Consensus       629 ~E~~~~~~~~q~~~~~~E~~e~~~ky~~~~~e~kalle~~~~~~e~~~e~~~~~~~~l~~e~~~~~~e~~~~~~~~~~k~  708 (736)
                      +|.......+.++.+=+ .+++|.||+.+..|.    .++.   ...=-+...+..+|+.|.+..+.++ --.-.+..|+
T Consensus       651 Ie~L~~eIkkkIe~av~-ss~LK~k~E~Lk~Ev----aka~---~~pd~~~k~kieal~~qik~~~~~a-~~~~~lkek~  721 (762)
T PLN03229        651 IESLNEEINKKIERVIR-SSDLKSKIELLKLEV----AKAS---KTPDVTEKEKIEALEQQIKQKIAEA-LNSSELKEKF  721 (762)
T ss_pred             HHHHHHHHHHHHHHHhc-chhHHHHHHHHHHHH----HhcC---CCCCcchHHHHHHHHHHHHHHHHHH-hccHhHHHHH
Confidence            33344444555555555 467777777776655    1111   1111111245566666666666555 2234556666


Q ss_pred             HHHHHHHhh
Q 004698          709 EHAEQCLTT  717 (736)
Q Consensus       709 ~~~~~~~~~  717 (736)
                      |.++.++..
T Consensus       722 e~l~~e~~~  730 (762)
T PLN03229        722 EELEAELAA  730 (762)
T ss_pred             HHHHHHHHH
Confidence            666655543

>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function

Probab=93.64  E-value=12  Score=40.28  Aligned_cols=84  Identities=17%  Similarity=0.204  Sum_probs=61.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhh
Q 004698          546 KRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSR  625 (736)
Q Consensus       546 k~~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~yee~~~~~~~~~~~~~~~i~~L~~k  625 (736)
                      +.+|+-+..+++.-..++.+...+..++...+++-+.|..++.....-.+.+...|+.+....+...+.=+..|..|++|
T Consensus       130 q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~eyQatf~eq~~ml~kRQ~yI~~LEsK  209 (401)
T PF06785_consen  130 QHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQELNDEYQATFVEQHSMLDKRQAYIGKLESK  209 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHH
Confidence            35566666666666666666666666676777777778777777777778888888888888877777777777788887


Q ss_pred             hHHH
Q 004698          626 STAA  629 (736)
Q Consensus       626 ~~~~  629 (736)
                      ++++
T Consensus       210 VqDL  213 (401)
T PF06785_consen  210 VQDL  213 (401)
T ss_pred             HHHH
Confidence            7773

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=93.63  E-value=0.11  Score=55.77  Aligned_cols=57  Identities=30%  Similarity=0.351  Sum_probs=37.6

Q ss_pred             EEEEEeeCCCCCChhHHHHHHhCCCCcccccC-CCCCccceEEeeccccccccCCCCceEEEEeecCCC
Q 004698           71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVAS-THRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI  138 (736)
Q Consensus        71 v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~-~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~  138 (736)
                      .+=|+.+|++..|||+|||.|.|..+-+.--+ |+--+--|+.-+         +|  ..+=+||+||+
T Consensus        63 da~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y---------~g--a~IQild~Pgi  120 (365)
T COG1163          63 DATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEY---------KG--AQIQLLDLPGI  120 (365)
T ss_pred             CeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEee---------cC--ceEEEEcCccc
Confidence            44688999999999999999999763221111 222223355443         23  56778999998

>PLN02318 phosphoribulokinase/uridine kinase

Probab=93.62  E-value=0.074  Score=61.83  Aligned_cols=43  Identities=23%  Similarity=0.254  Sum_probs=36.7

Q ss_pred             CceeeCHHHHHHhhccCCCEEEEEeeCCCCCChhHHHHHHhCC
Q 004698           52 GKFRMDPEAVAALQLVKEPIGVVSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        52 ~~l~l~~eAl~~L~~i~~~v~vVsv~G~~rtGKS~LlN~l~~~   94 (736)
                      ..|-+--.|++.|...+.++.||+|+|+.++|||||++.|.+.
T Consensus        46 ~g~~~~ira~qlL~~~~~~riIIGIaGpSGSGKTTLAk~Lagl   88 (656)
T PLN02318         46 KGFFVVIRACQLLAQKNDGIILVGVAGPSGAGKTVFTEKVLNF   88 (656)
T ss_pred             cchhhhhHHHHHHHhcCCCeEEEEEECCCCCcHHHHHHHHHhh
Confidence            4566777788888876677889999999999999999999865

>KOG0410 consensus Predicted GTP binding protein [General function prediction only]

Probab=93.60  E-value=0.057  Score=57.77  Aligned_cols=58  Identities=29%  Similarity=0.359  Sum_probs=42.3

Q ss_pred             CCCEEEEEeeCCCCCChhHHHHHHhCCC-----CcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           68 KEPIGVVSVCGRARQGKSFILNQLLGRS-----SGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        68 ~~~v~vVsv~G~~rtGKS~LlN~l~~~~-----~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      ..++.||||+|-+.+|||+|+|.|.+..     .-|.   |..|+++-.-|         |.|  ..++|-||=||-
T Consensus       175 ~~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFA---TLDpT~h~a~L---------psg--~~vlltDTvGFi  237 (410)
T KOG0410|consen  175 GESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFA---TLDPTLHSAHL---------PSG--NFVLLTDTVGFI  237 (410)
T ss_pred             cCCCceEEEEeecCccHHHHHHHHHhhhcCccchhhe---eccchhhhccC---------CCC--cEEEEeechhhh
Confidence            3588899999999999999999998542     2353   34455554443         455  368999999973

>TIGR00484 EF-G translation elongation factor EF-G

Probab=93.57  E-value=0.29  Score=59.05  Aligned_cols=26  Identities=12%  Similarity=0.178  Sum_probs=22.6

Q ss_pred             CCEEEEEeeCCCCCChhHHHHHHhCC
Q 004698           69 EPIGVVSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        69 ~~v~vVsv~G~~rtGKS~LlN~l~~~   94 (736)
                      ..|--|+|+|...+|||+|+|+|++.
T Consensus         8 ~~irni~iiG~~~~GKsTL~~~ll~~   33 (689)
T TIGR00484         8 NRFRNIGISAHIDAGKTTTTERILFY   33 (689)
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHh
Confidence            35667999999999999999999854

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=93.47  E-value=0.12  Score=53.35  Aligned_cols=56  Identities=23%  Similarity=0.342  Sum_probs=38.7

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccce-EEeeccccccccCCCCceEEEEeecCCCc
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKG-LWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~G-iw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      |.|+|..++|||.|++++.+..  |.-  ...| |.| .|.  .++.   .+|..+.+-|.||.|..
T Consensus         4 IvvvGd~~vGKTsLi~~~~~~~--f~~--~y~p-Ti~~~~~--~~~~---~~~~~v~L~iwDt~G~e   60 (222)
T cd04173           4 IVVVGDAECGKTALLQVFAKDA--YPG--SYVP-TVFENYT--ASFE---IDKRRIELNMWDTSGSS   60 (222)
T ss_pred             EEEECCCCCCHHHHHHHHHcCC--CCC--ccCC-ccccceE--EEEE---ECCEEEEEEEEeCCCcH
Confidence            6799999999999999999765  642  1223 333 232  2232   35777889999999954

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>TIGR00235 udk uridine kinase

Probab=93.43  E-value=0.061  Score=54.67  Aligned_cols=28  Identities=14%  Similarity=0.250  Sum_probs=24.0

Q ss_pred             CCCEEEEEeeCCCCCChhHHHHHHhCCC
Q 004698           68 KEPIGVVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        68 ~~~v~vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      +.+-.||+|+|+.++|||||++.|.+..
T Consensus         3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~l   30 (207)
T TIGR00235         3 KPKGIIIGIGGGSGSGKTTVARKIYEQL   30 (207)
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHHHHh
Confidence            3455789999999999999999998763

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=93.41  E-value=14  Score=40.20  Aligned_cols=156  Identities=14%  Similarity=0.177  Sum_probs=92.9

Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH-H-H-HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 004698          507 DQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYL-K-R-YDDAINDKKKLADDYTSRINNLQGENISLREKSSSL  583 (736)
Q Consensus       507 ~~i~~e~~~L~~k~es~e~e~~~lk~~Le~~e~~~~e~~-k-~-~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L  583 (736)
                      +.-++++...+..++.+......+++...+.......+. . . ....-..+-..+.+...+...|..++.++..++..+
T Consensus        19 e~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~   98 (319)
T PF09789_consen   19 EKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEVEELRQKLNEA   98 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555666666666666666666665554332111110 0 0 001222334445666666667777777777777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698          584 SKTVDSLKNEISDWKRKYDQVLTKQ-KAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAK  662 (736)
Q Consensus       584 ~~~le~lk~e~~e~~~~yee~~~~~-~~~~~~~~~~i~~L~~k~~~~E~~~~~~~~q~~~~~~E~~e~~~ky~~~~~e~k  662 (736)
                      ..+...++..++..+..-+..-... --+.+.+-.+++.++.++..+|--+.+.-+..+-+..|-.-.+.|.+++..|.-
T Consensus        99 qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn  178 (319)
T PF09789_consen   99 QGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELN  178 (319)
T ss_pred             hchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777777777776665553322111 033446777777777777777777777777777777777777777777766653

>PRK01889 GTPase RsgA; Reviewed

Probab=93.36  E-value=0.047  Score=60.48  Aligned_cols=24  Identities=38%  Similarity=0.583  Sum_probs=21.5

Q ss_pred             EEEEeeCCCCCChhHHHHHHhCCC
Q 004698           72 GVVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      -+++++|..++|||+|+|.|+|..
T Consensus       196 ~~~~lvG~sgvGKStLin~L~g~~  219 (356)
T PRK01889        196 KTVALLGSSGVGKSTLVNALLGEE  219 (356)
T ss_pred             CEEEEECCCCccHHHHHHHHHHhc
Confidence            378999999999999999999853

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=93.33  E-value=0.078  Score=56.26  Aligned_cols=23  Identities=30%  Similarity=0.367  Sum_probs=21.3

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      +++|+|+.|+||||||+.|.|..
T Consensus        29 ~~~i~G~nGsGKSTLl~~l~Gl~   51 (271)
T PRK13638         29 VTGLVGANGCGKSTLFMNLSGLL   51 (271)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCC
Confidence            79999999999999999999864

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=93.31  E-value=0.11  Score=61.90  Aligned_cols=26  Identities=31%  Similarity=0.511  Sum_probs=22.1

Q ss_pred             CCEEEEEeeCCCCCChhHHHHHHhCCC
Q 004698           69 EPIGVVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        69 ~~v~vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      .++. |+|+|...+|||+|+|+|+...
T Consensus        23 ~~~~-i~iiGh~~~GKSTL~~~Ll~~~   48 (632)
T PRK05506         23 SLLR-FITCGSVDDGKSTLIGRLLYDS   48 (632)
T ss_pred             CeeE-EEEECCCCCChHHHHHHHHHHh
Confidence            4566 6699999999999999999654

>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.29  E-value=0.11  Score=49.54  Aligned_cols=58  Identities=28%  Similarity=0.396  Sum_probs=45.6

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      +-|+|+.+||||-||-++....  |.-   ..++|-||-.-+.-+   ...|+.+.+-+.||-|..
T Consensus        12 fl~iG~aGtGKSCLLh~Fie~k--fkD---dssHTiGveFgSrIi---nVGgK~vKLQIWDTAGQE   69 (214)
T KOG0086|consen   12 FLVIGSAGTGKSCLLHQFIENK--FKD---DSSHTIGVEFGSRIV---NVGGKTVKLQIWDTAGQE   69 (214)
T ss_pred             eEEeccCCCChhHHHHHHHHhh--hcc---cccceeeeeecceee---eecCcEEEEEEeecccHH
Confidence            5689999999999999998765  543   236799998887655   346777889999999953

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=93.27  E-value=0.33  Score=55.09  Aligned_cols=27  Identities=30%  Similarity=0.441  Sum_probs=22.8

Q ss_pred             CCEEEEEeeCCCCCChhHHHHHHhCCC
Q 004698           69 EPIGVVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        69 ~~v~vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      .|..-|+|+|...+|||+|+|+|++..
T Consensus         4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~   30 (425)
T PRK12317          4 KPHLNLAVIGHVDHGKSTLVGRLLYET   30 (425)
T ss_pred             CCEEEEEEECCCCCChHHHHHHHHHHc
Confidence            455569999999999999999999543

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=93.26  E-value=0.083  Score=57.07  Aligned_cols=24  Identities=33%  Similarity=0.379  Sum_probs=21.8

Q ss_pred             EEEEeeCCCCCChhHHHHHHhCCC
Q 004698           72 GVVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      -+++++|+.|+||||||+.|.|..
T Consensus        31 e~~~l~G~NGaGKSTLl~~l~Gl~   54 (303)
T TIGR01288        31 ECFGLLGPNGAGKSTIARMLLGMI   54 (303)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCC
Confidence            379999999999999999999864

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>cd04103 Centaurin_gamma Centaurin gamma

Probab=93.24  E-value=0.17  Score=49.00  Aligned_cols=56  Identities=23%  Similarity=0.374  Sum_probs=36.9

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      |.|+|+.++|||+|++++++..  |.-.   .+.|.|-..  ..+   ..+|..+.+.+.||.|..
T Consensus         3 i~vvG~~gvGKTsli~~~~~~~--f~~~---~~~~~~~~~--~~i---~~~~~~~~l~i~D~~g~~   58 (158)
T cd04103           3 LGIVGNLQSGKSALVHRYLTGS--YVQL---ESPEGGRFK--KEV---LVDGQSHLLLIRDEGGAP   58 (158)
T ss_pred             EEEECCCCCcHHHHHHHHHhCC--CCCC---CCCCccceE--EEE---EECCEEEEEEEEECCCCC
Confidence            6899999999999999987654  5321   122334331  112   124666788999999863

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>cd04126 Rab20 Rab20 subfamily

Probab=93.21  E-value=0.15  Score=52.64  Aligned_cols=53  Identities=25%  Similarity=0.420  Sum_probs=37.1

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      |.|+|..++|||+|++++++..  |.  . . ..|.|.-+....+       ..+.+.++||.|..
T Consensus         3 IvivG~~~vGKTSLi~r~~~~~--f~--~-~-~~Tig~~~~~~~~-------~~~~l~iwDt~G~e   55 (220)
T cd04126           3 VVLLGDMNVGKTSLLHRYMERR--FK--D-T-VSTVGGAFYLKQW-------GPYNISIWDTAGRE   55 (220)
T ss_pred             EEEECCCCCcHHHHHHHHhcCC--CC--C-C-CCccceEEEEEEe-------eEEEEEEEeCCCcc
Confidence            6789999999999999999876  63  1 2 2355544332221       23678999999964

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>PLN03126 Elongation factor Tu; Provisional

Probab=93.21  E-value=0.27  Score=56.57  Aligned_cols=104  Identities=13%  Similarity=0.187  Sum_probs=55.2

Q ss_pred             cCCCEEEEEeeCCCCCChhHHHHHHhCCCC--------cccccC-CCCCccceEEeeccccccccCCCCceEEEEeecCC
Q 004698           67 VKEPIGVVSVCGRARQGKSFILNQLLGRSS--------GFQVAS-THRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEG  137 (736)
Q Consensus        67 i~~~v~vVsv~G~~rtGKS~LlN~l~~~~~--------gF~~~~-~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG  137 (736)
                      ...|..-|+|+|...+|||+|+|+|++...        ++.... +.+-..+||=+-.......   ..+..+.|+||+|
T Consensus        77 ~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~---~~~~~i~liDtPG  153 (478)
T PLN03126         77 RKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYE---TENRHYAHVDCPG  153 (478)
T ss_pred             ccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEe---cCCcEEEEEECCC
Confidence            456777799999999999999999996421        111110 1112235664332211111   1234678999999


Q ss_pred             CcccCCCCccchHHHHHhhhccceEEEccCCCCchHHhhhh
Q 004698          138 IDAYDQTGTYSTQIFSLAVLLSSMFIYNQMGGIDESAIDRL  178 (736)
Q Consensus       138 ~~~~~~~~~~d~~IFaLa~LLSS~~IyN~~g~i~e~~l~~L  178 (736)
                      ...+-     ...+.+++..=.-++|+.....+..+..+++
T Consensus       154 h~~f~-----~~~~~g~~~aD~ailVVda~~G~~~qt~e~~  189 (478)
T PLN03126        154 HADYV-----KNMITGAAQMDGAILVVSGADGPMPQTKEHI  189 (478)
T ss_pred             HHHHH-----HHHHHHHhhCCEEEEEEECCCCCcHHHHHHH
Confidence            53211     2234444432233455655544544444444

>PRK00300 gmk guanylate kinase; Provisional

Probab=93.15  E-value=0.076  Score=53.60  Aligned_cols=27  Identities=26%  Similarity=0.364  Sum_probs=23.1

Q ss_pred             CEEEEEeeCCCCCChhHHHHHHhCCCC
Q 004698           70 PIGVVSVCGRARQGKSFILNQLLGRSS   96 (736)
Q Consensus        70 ~v~vVsv~G~~rtGKS~LlN~l~~~~~   96 (736)
                      |=.+|+|+|+.++|||+|++.|.+...
T Consensus         4 ~g~~i~i~G~sGsGKstl~~~l~~~~~   30 (205)
T PRK00300          4 RGLLIVLSGPSGAGKSTLVKALLERDP   30 (205)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence            334799999999999999999998753

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=93.15  E-value=0.068  Score=54.44  Aligned_cols=32  Identities=31%  Similarity=0.397  Sum_probs=24.8

Q ss_pred             HhhccCCCEE---EEEeeCCCCCChhHHHHHHhCC
Q 004698           63 ALQLVKEPIG---VVSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        63 ~L~~i~~~v~---vVsv~G~~rtGKS~LlN~l~~~   94 (736)
                      .|..++-.|.   ||+|+||.+|||||||..|-+-
T Consensus        17 VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~L   51 (240)
T COG1126          17 VLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGL   51 (240)
T ss_pred             EecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCC
Confidence            4555554333   8999999999999999988764

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=93.13  E-value=0.092  Score=54.51  Aligned_cols=24  Identities=29%  Similarity=0.338  Sum_probs=21.8

Q ss_pred             EEEEeeCCCCCChhHHHHHHhCCC
Q 004698           72 GVVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      -+++|+|+.|+|||+|++.|+|..
T Consensus        28 e~~~l~G~nGsGKSTLl~~l~G~~   51 (240)
T PRK09493         28 EVVVIIGPSGSGKSTLLRCINKLE   51 (240)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCC
Confidence            379999999999999999999864

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=93.08  E-value=0.16  Score=52.78  Aligned_cols=58  Identities=24%  Similarity=0.252  Sum_probs=39.4

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      =|.|+|..++|||.|++++.+..  |.-  ...| |.|.-. ...+   ..+|..+.+-|.||.|..
T Consensus        15 KIvvvGd~~VGKTsLi~r~~~~~--F~~--~y~p-Ti~~~~-~~~i---~~~~~~v~l~iwDTaG~e   72 (232)
T cd04174          15 KLVLVGDVQCGKTAMLQVLAKDC--YPE--TYVP-TVFENY-TAGL---ETEEQRVELSLWDTSGSP   72 (232)
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC--CCC--CcCC-ceeeee-EEEE---EECCEEEEEEEEeCCCch
Confidence            36799999999999999998765  642  2223 334322 1222   235677999999999953

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=93.08  E-value=0.14  Score=52.10  Aligned_cols=23  Identities=35%  Similarity=0.543  Sum_probs=21.4

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      +++|+|+.++|||+|++.|+|-.
T Consensus        26 ~~~i~G~nGsGKSTLl~~l~G~~   48 (213)
T TIGR01277        26 IVAIMGPSGAGKSTLLNLIAGFI   48 (213)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            68999999999999999999864

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=93.01  E-value=0.07  Score=55.20  Aligned_cols=23  Identities=26%  Similarity=0.525  Sum_probs=21.4

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      +++|+|+.|+||||||+.|.|..
T Consensus        28 ~~~l~G~nGsGKSTLl~~l~G~~   50 (235)
T cd03261          28 ILAIIGPSGSGKSTLLRLIVGLL   50 (235)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            69999999999999999999864

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]

Probab=93.01  E-value=13  Score=38.62  Aligned_cols=89  Identities=12%  Similarity=0.191  Sum_probs=44.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 004698          632 RLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHA  711 (736)
Q Consensus       632 ~~~~~~~q~~~~~~E~~e~~~ky~~~~~e~kalle~~~~~~e~~~e~~~~~~~~l~~e~~~~~~e~~~~~~~~~~k~~~~  711 (736)
                      +...+.+++...+....+|.++=..++......|-+.+-.-...+++....+++.-.++..........+..+..||...
T Consensus        53 ~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~  132 (225)
T COG1842          53 RQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAEL  132 (225)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555566666666666666666666655544444444333333333334444444444444444444455555555555


Q ss_pred             HHHHhhHHH
Q 004698          712 EQCLTTLRL  720 (736)
Q Consensus       712 ~~~~~~~~~  720 (736)
                      +.....+.-
T Consensus       133 ~~~~~~l~a  141 (225)
T COG1842         133 RAKKEALKA  141 (225)
T ss_pred             HHHHHHHHH
Confidence            544444433

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=93.00  E-value=0.093  Score=55.84  Aligned_cols=23  Identities=26%  Similarity=0.371  Sum_probs=21.5

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      +++|+|+.++|||+||+.|.|-.
T Consensus        30 ~~~i~G~nGsGKSTLl~~l~Gl~   52 (274)
T PRK13644         30 YIGIIGKNGSGKSTLALHLNGLL   52 (274)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            79999999999999999999864

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=92.99  E-value=4.7  Score=48.77  Aligned_cols=7  Identities=14%  Similarity=0.259  Sum_probs=3.0

Q ss_pred             CEEEEEe
Q 004698           70 PIGVVSV   76 (736)
Q Consensus        70 ~v~vVsv   76 (736)
                      -|+||-+
T Consensus       106 ~v~V~~L  112 (717)
T PF10168_consen  106 GVVVLEL  112 (717)
T ss_pred             cEEEEEe
Confidence            3444444

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]

Probab=92.99  E-value=19  Score=40.59  Aligned_cols=113  Identities=16%  Similarity=0.147  Sum_probs=72.9

Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhhHHHHHHHHH
Q 004698          613 DQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAA-------IVQERTSKEMQQREDV  685 (736)
Q Consensus       613 ~~~~~~i~~L~~k~~~~E~~~~~~~~q~~~~~~E~~e~~~ky~~~~~e~kalle~~~-------~~~e~~~e~~~~~~~~  685 (736)
                      ..++.-|++|++.+.-+|-++..+...-...+++.++-.++...-.++..-.|.+.+       -..|+.+...+.++++
T Consensus       490 ~~~~~~i~El~~~l~~~e~~L~~a~s~~~~~ke~~e~e~~a~~~E~eklE~el~~lnL~s~ts~l~~eq~vqs~~i~ld~  569 (622)
T COG5185         490 KNLKHDINELTQILEKLELELSEANSKFELSKEENERELVAQRIEIEKLEKELNDLNLLSKTSILDAEQLVQSTEIKLDE  569 (622)
T ss_pred             hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhccchHhhHHHHHHHHHhhHHH
Confidence            356666778888888888888888888888888887777777666655544444443       3445666667777777


Q ss_pred             HHHHHHhhHHHHHHH--------HH---HHHHHHHHHHHHHhhHHHHhhhh
Q 004698          686 LREEFSSTLAEKEEE--------MK---EKATKIEHAEQCLTTLRLELKVS  725 (736)
Q Consensus       686 l~~e~~~~~~e~~~~--------~~---~~~~k~~~~~~~~~~~~~~l~~~  725 (736)
                      +-..+-.-..++.++        |+   -+|..++..+-.+...+.+|...
T Consensus       570 ~~~~~n~~r~~i~k~V~~v~~~~~~fk~~IQssledl~~~l~k~~~~l~~~  620 (622)
T COG5185         570 LKVDLNRKRYKIHKQVIHVIDITSKFKINIQSSLEDLENELGKVIEELRNL  620 (622)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHHHHHHHHHhc
Confidence            666666655555544        11   24555666666666666665543

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=92.97  E-value=0.09  Score=54.00  Aligned_cols=35  Identities=23%  Similarity=0.331  Sum_probs=28.2

Q ss_pred             HHHhhccCCCEE---EEEeeCCCCCChhHHHHHHhCCC
Q 004698           61 VAALQLVKEPIG---VVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        61 l~~L~~i~~~v~---vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      .++|+.++-.|.   |-+|+||.+||||||.+.|.|..
T Consensus        17 keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p   54 (251)
T COG0396          17 KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHP   54 (251)
T ss_pred             hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            367766653333   78999999999999999999985

>PRK00049 elongation factor Tu; Reviewed

Probab=92.96  E-value=0.25  Score=55.52  Aligned_cols=26  Identities=19%  Similarity=0.265  Sum_probs=22.6

Q ss_pred             CCEEEEEeeCCCCCChhHHHHHHhCC
Q 004698           69 EPIGVVSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        69 ~~v~vVsv~G~~rtGKS~LlN~l~~~   94 (736)
                      .|..-|+|+|...+|||+|+++|++.
T Consensus        10 ~~~~ni~iiGhvd~GKSTL~~~L~~~   35 (396)
T PRK00049         10 KPHVNVGTIGHVDHGKTTLTAAITKV   35 (396)
T ss_pred             CCEEEEEEEeECCCCHHHHHHHHHHh
Confidence            45556999999999999999999973

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=92.90  E-value=0.15  Score=53.48  Aligned_cols=23  Identities=30%  Similarity=0.440  Sum_probs=21.5

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      +++|+|+.++|||+||+.|.|..
T Consensus        31 ~~~l~G~nGsGKSTLl~~l~Gl~   53 (254)
T PRK10418         31 VLALVGGSGSGKSLTCAAALGIL   53 (254)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            79999999999999999999874

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=92.90  E-value=0.086  Score=54.62  Aligned_cols=23  Identities=30%  Similarity=0.424  Sum_probs=21.2

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      .|+|+|..++||||||+.|.|.-
T Consensus        55 ~vGiiG~NGaGKSTLlkliaGi~   77 (249)
T COG1134          55 RVGIIGHNGAGKSTLLKLIAGIY   77 (249)
T ss_pred             EEEEECCCCCcHHHHHHHHhCcc
Confidence            69999999999999999999864

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=92.89  E-value=0.35  Score=57.09  Aligned_cols=60  Identities=22%  Similarity=0.335  Sum_probs=36.8

Q ss_pred             EEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698           72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA  140 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~  140 (736)
                      .+|+|+|...+|||+|+|+|.+..  |..+.. ...|..+-.+..++    +++.  .+.|+||+|...
T Consensus        88 p~V~I~Ghvd~GKTSLl~~l~~~~--v~~~e~-~GIT~~ig~~~v~~----~~~~--~i~~iDTPGhe~  147 (587)
T TIGR00487        88 PVVTIMGHVDHGKTSLLDSIRKTK--VAQGEA-GGITQHIGAYHVEN----EDGK--MITFLDTPGHEA  147 (587)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCC--cccccC-CceeecceEEEEEE----CCCc--EEEEEECCCCcc
Confidence            369999999999999999998764  432211 11232222222211    1222  578999999643

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=92.89  E-value=0.37  Score=58.54  Aligned_cols=90  Identities=16%  Similarity=0.325  Sum_probs=48.6

Q ss_pred             EEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcccCCCCccchHH
Q 004698           72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYDQTGTYSTQI  151 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~~~~~~~d~~I  151 (736)
                      .+|+|+|....|||+|+|+|.+..  |..+.. ...|..+-.+..++     +|  ..+.|+||+|...+..     ++ 
T Consensus       291 pvV~ImGhvd~GKTSLl~~Lr~~~--v~~~e~-~GIT~~iga~~v~~-----~~--~~ItfiDTPGhe~F~~-----m~-  354 (787)
T PRK05306        291 PVVTIMGHVDHGKTSLLDAIRKTN--VAAGEA-GGITQHIGAYQVET-----NG--GKITFLDTPGHEAFTA-----MR-  354 (787)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCC--cccccc-CceeeeccEEEEEE-----CC--EEEEEEECCCCccchh-----HH-
Confidence            479999999999999999998654  322211 11122121111111     12  5688999999654311     11 


Q ss_pred             HHHhhhcc--ceEEEccCCCCchHHhhhh
Q 004698          152 FSLAVLLS--SMFIYNQMGGIDESAIDRL  178 (736)
Q Consensus       152 FaLa~LLS--S~~IyN~~g~i~e~~l~~L  178 (736)
                       .-++-.+  -++||.....+..+..+.+
T Consensus       355 -~rga~~aDiaILVVdAddGv~~qT~e~i  382 (787)
T PRK05306        355 -ARGAQVTDIVVLVVAADDGVMPQTIEAI  382 (787)
T ss_pred             -HhhhhhCCEEEEEEECCCCCCHhHHHHH
Confidence             1111112  2567776554545444443

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=92.84  E-value=16  Score=39.37  Aligned_cols=106  Identities=19%  Similarity=0.251  Sum_probs=64.1

Q ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH-HHHHHHHHHHHH
Q 004698          514 SSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKS-SSLSKTVDSLKN  592 (736)
Q Consensus       514 ~~L~~k~es~e~e~~~lk~~Le~~e~~~~e~~k~~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~-~~L~~~le~lk~  592 (736)
                      ..++..+.++..+...++..++.....    -+.+++.+..++..       .+.+..+...=++-+ ..|-+.++.+++
T Consensus        23 ~~l~~~~~sL~qen~~Lk~El~~ek~~----~~~L~~e~~~lr~~-------sv~~~~~aEqEEE~isN~LlKkl~~l~k   91 (310)
T PF09755_consen   23 EQLRKRIESLQQENRVLKRELETEKAR----CKHLQEENRALREA-------SVRIQAKAEQEEEFISNTLLKKLQQLKK   91 (310)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHH----HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            677888888888777777766442111    13445555554443       344444444334333 357788899999


Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHH
Q 004698          593 EISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARL  633 (736)
Q Consensus       593 e~~e~~~~yee~~~~~~~~~~~~~~~i~~L~~k~~~~E~~~  633 (736)
                      ++..+-..|++.=.-.   .+.+++.+..|++--..+|..+
T Consensus        92 eKe~L~~~~e~EEE~l---tn~L~rkl~qLr~EK~~lE~~L  129 (310)
T PF09755_consen   92 EKETLALKYEQEEEFL---TNDLSRKLNQLRQEKVELENQL  129 (310)
T ss_pred             HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence            9999988885433322   4567777777777444555553

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=92.82  E-value=12  Score=37.87  Aligned_cols=52  Identities=17%  Similarity=0.344  Sum_probs=27.1

Q ss_pred             HhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhh
Q 004698          674 RTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKVS  725 (736)
Q Consensus       674 ~~~e~~~~~~~~l~~e~~~~~~e~~~~~~~~~~k~~~~~~~~~~~~~~l~~~  725 (736)
                      +.+..++.++.-....++-.+.--..++.+.+.++..+...+..|..-|+++
T Consensus       139 ~ki~~Lek~leL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~klkEK  190 (194)
T PF15619_consen  139 KKIQELEKQLELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKLKEK  190 (194)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333344433344444444344446666666666666666666666654

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=92.78  E-value=0.2  Score=49.99  Aligned_cols=57  Identities=25%  Similarity=0.317  Sum_probs=38.3

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      |.|+|..++|||.|++++++..  |.-  ...| |.|.-. ...+   ..++..+.+-+.||.|..
T Consensus         8 ivvvGd~~vGKTsli~~~~~~~--f~~--~~~p-T~~~~~-~~~~---~~~~~~~~l~iwDtaG~e   64 (182)
T cd04172           8 IVVVGDSQCGKTALLHVFAKDC--FPE--NYVP-TVFENY-TASF---EIDTQRIELSLWDTSGSP   64 (182)
T ss_pred             EEEECCCCCCHHHHHHHHHhCC--CCC--ccCC-ceeeee-EEEE---EECCEEEEEEEEECCCch
Confidence            8899999999999999999765  532  1112 333221 1222   225667889999999953

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=92.74  E-value=0.083  Score=52.78  Aligned_cols=23  Identities=35%  Similarity=0.424  Sum_probs=21.4

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      +++|+|+.++|||+||+.|.|..
T Consensus        20 ~~~i~G~nGsGKSTLl~~i~G~~   42 (190)
T TIGR01166        20 VLALLGANGAGKSTLLLHLNGLL   42 (190)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            79999999999999999999864

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=92.71  E-value=0.082  Score=53.88  Aligned_cols=23  Identities=35%  Similarity=0.527  Sum_probs=21.4

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      +++|+|+.++||||||+.|.|..
T Consensus        31 ~~~i~G~nGsGKSTLl~~l~Gl~   53 (216)
T TIGR00960        31 MVFLVGHSGAGKSTFLKLILGIE   53 (216)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999999864

>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=92.69  E-value=32  Score=42.43  Aligned_cols=18  Identities=28%  Similarity=0.362  Sum_probs=14.9

Q ss_pred             EeeCCCCCChhHHHHHHh
Q 004698           75 SVCGRARQGKSFILNQLL   92 (736)
Q Consensus        75 sv~G~~rtGKS~LlN~l~   92 (736)
                      =|+||.|||||++.+.+.
T Consensus        46 mIiGpNGSGKSSiVcAIc   63 (1072)
T KOG0979|consen   46 MIIGPNGSGKSSIVCAIC   63 (1072)
T ss_pred             eEECCCCCCchHHHHHHH
Confidence            468999999999998864

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=92.68  E-value=0.084  Score=53.57  Aligned_cols=24  Identities=33%  Similarity=0.375  Sum_probs=21.8

Q ss_pred             EEEEeeCCCCCChhHHHHHHhCCC
Q 004698           72 GVVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      .+++|+|+.++||||||+.|.|..
T Consensus        28 ~~~~l~G~nGsGKSTLl~~l~G~~   51 (211)
T cd03225          28 EFVLIVGPNGSGKSTLLRLLNGLL   51 (211)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCC
Confidence            379999999999999999999864

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=92.64  E-value=0.1  Score=42.72  Aligned_cols=20  Identities=30%  Similarity=0.473  Sum_probs=18.0

Q ss_pred             EEEeeCCCCCChhHHHHHHh
Q 004698           73 VVSVCGRARQGKSFILNQLL   92 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~   92 (736)
                      +..|.|+.++|||+||+.+.
T Consensus        25 ~tli~G~nGsGKSTllDAi~   44 (62)
T PF13555_consen   25 VTLITGPNGSGKSTLLDAIQ   44 (62)
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            68899999999999999853

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=92.62  E-value=0.082  Score=52.64  Aligned_cols=23  Identities=26%  Similarity=0.468  Sum_probs=21.3

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      +|+|+|+.++|||||++.|.|..
T Consensus        27 ~~~l~G~nGsGKSTLl~~l~Gl~   49 (177)
T cd03222          27 VIGIVGPNGTGKTTAVKILAGQL   49 (177)
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            69999999999999999999864

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans

Probab=92.61  E-value=11  Score=36.88  Aligned_cols=74  Identities=15%  Similarity=0.118  Sum_probs=40.8

Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 004698          513 RSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKT  586 (736)
Q Consensus       513 ~~~L~~k~es~e~e~~~lk~~Le~~e~~~~e~~k~~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~  586 (736)
                      ...|+...+.+......-+..-...+..+.+.+..++...+++...+++++++...|+.++.++.+....|...
T Consensus        52 ~~~L~~d~e~L~~q~~~ek~~r~~~e~~l~~~Ed~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~  125 (158)
T PF09744_consen   52 LELLREDNEQLETQYEREKELRKQAEEELLELEDQWRQERKDLQSQVEQLEEENRQLELKLKNLSDQSSRLEER  125 (158)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchh
Confidence            44444444444444444444444444444555556666666666667777777766666666655555444443

Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=92.59  E-value=0.22  Score=58.81  Aligned_cols=65  Identities=14%  Similarity=0.250  Sum_probs=41.1

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCCCcccccCCC---------CCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698           73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTH---------RPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA  140 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~---------~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~  140 (736)
                      -|+|+|...+|||+|+++|+.....|.-...+         .-..+||=+-+.....   +..++.+-|+||+|..+
T Consensus         3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v---~~~~~kinlIDTPGh~D   76 (594)
T TIGR01394         3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAI---RYNGTKINIVDTPGHAD   76 (594)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEE---EECCEEEEEEECCCHHH
Confidence            38999999999999999999765445332111         1123566554432211   12347788999999754

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>TIGR00634 recN DNA repair protein RecN

Probab=92.57  E-value=27  Score=41.26  Aligned_cols=21  Identities=33%  Similarity=0.626  Sum_probs=17.8

Q ss_pred             EEEEeeCCCCCChhHHHHHHh
Q 004698           72 GVVSVCGRARQGKSFILNQLL   92 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~   92 (736)
                      ++..|+|+.|+|||.||..|.
T Consensus        23 g~~vitG~nGaGKS~ll~al~   43 (563)
T TIGR00634        23 GLTVLTGETGAGKSMIIDALS   43 (563)
T ss_pred             CeEEEECCCCCCHHHHHHHHH
Confidence            356789999999999998864

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>TIGR00503 prfC peptide chain release factor 3

Probab=92.52  E-value=0.33  Score=56.65  Aligned_cols=95  Identities=15%  Similarity=0.241  Sum_probs=50.3

Q ss_pred             CEEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCC-----C----------ccceEEeeccccccccCCCCceEEEEee
Q 004698           70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHR-----P----------CTKGLWLWSAPLKRTALDGTEYNLLLLD  134 (736)
Q Consensus        70 ~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~-----~----------~T~Giw~w~~p~~~~~~~g~~~~v~llD  134 (736)
                      .+--|+|+|...+|||+|+++|+-....-...+++.     +          .++||=+.+.....   +..++.+.|+|
T Consensus        10 ~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~---~~~~~~inliD   86 (527)
T TIGR00503        10 KRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQF---PYRDCLVNLLD   86 (527)
T ss_pred             cCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEE---eeCCeEEEEEE
Confidence            455699999999999999999874321111101110     1          12455444332221   22347788999


Q ss_pred             cCCCcccCCCCccchHHHHHhhhccceEEEccCCCCch
Q 004698          135 SEGIDAYDQTGTYSTQIFSLAVLLSSMFIYNQMGGIDE  172 (736)
Q Consensus       135 teG~~~~~~~~~~d~~IFaLa~LLSS~~IyN~~g~i~e  172 (736)
                      |+|..++.    .+++ -+|...=+=++|+.....+..
T Consensus        87 TPG~~df~----~~~~-~~l~~aD~aIlVvDa~~gv~~  119 (527)
T TIGR00503        87 TPGHEDFS----EDTY-RTLTAVDNCLMVIDAAKGVET  119 (527)
T ss_pred             CCChhhHH----HHHH-HHHHhCCEEEEEEECCCCCCH
Confidence            99974221    1222 233332233556666554443

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=92.50  E-value=0.091  Score=53.14  Aligned_cols=23  Identities=22%  Similarity=0.456  Sum_probs=21.3

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      +++|+|+.++|||+||+.|.|..
T Consensus        28 ~~~i~G~nGsGKSTLl~~l~Gl~   50 (205)
T cd03226          28 IIALTGKNGAGKTTLAKILAGLI   50 (205)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            79999999999999999999864

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]

Probab=92.48  E-value=0.37  Score=53.40  Aligned_cols=111  Identities=18%  Similarity=0.161  Sum_probs=63.7

Q ss_pred             CCCEEEEEeeCCCCCChhHHHHHHhCCC--Cccccc-------C-CC-CCccceEEeeccccccccCCCCceEEEE-eec
Q 004698           68 KEPIGVVSVCGRARQGKSFILNQLLGRS--SGFQVA-------S-TH-RPCTKGLWLWSAPLKRTALDGTEYNLLL-LDS  135 (736)
Q Consensus        68 ~~~v~vVsv~G~~rtGKS~LlN~l~~~~--~gF~~~-------~-~~-~~~T~Giw~w~~p~~~~~~~g~~~~v~l-lDt  135 (736)
                      ..+.++|.|+|+..||||||.+.|+++.  .||.++       . .. -|.|.+.-.-..|+.. ......++..| =++
T Consensus        70 ~~~~~~vmvvG~vDSGKSTLt~~LaN~~l~rG~~v~iiDaDvGQ~ei~pPg~ISL~~~~s~~~~-L~~l~~~~~~FvG~i  148 (398)
T COG1341          70 AGKVGVVMVVGPVDSGKSTLTTYLANKLLARGRKVAIIDADVGQSEIGPPGFISLAFPESPVIS-LSELEPFTLYFVGSI  148 (398)
T ss_pred             ccCCcEEEEECCcCcCHHHHHHHHHHHHhhcCceEEEEeCCCCCcccCCCceEEeecccCCCCC-HHHcCccceEEEecc
Confidence            3578899999999999999999998763  366443       1 11 1333333332222221 00112223333 222


Q ss_pred             CCCcccCCCCccchHHHHHhhhccceEEEccCCCCch-HHhhhhH
Q 004698          136 EGIDAYDQTGTYSTQIFSLAVLLSSMFIYNQMGGIDE-SAIDRLS  179 (736)
Q Consensus       136 eG~~~~~~~~~~d~~IFaLa~LLSS~~IyN~~g~i~e-~~l~~L~  179 (736)
                      ...+...+--.-=++++.+|.=.+-+.|.|+.|-|.- ..++.+.
T Consensus       149 sP~~~~~~~i~~v~rL~~~a~~~~~~ilIdT~GWi~G~~g~elk~  193 (398)
T COG1341         149 SPQGFPGRYIAGVARLVDLAKKEADFILIDTDGWIKGWGGLELKR  193 (398)
T ss_pred             CCCCChHHHHHHHHHHHHHhhccCCEEEEcCCCceeCchHHHHHH
Confidence            2211111111113678888887778889999999987 7887654

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=92.47  E-value=0.092  Score=53.63  Aligned_cols=23  Identities=26%  Similarity=0.429  Sum_probs=21.4

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      +++|+|+.++|||+||+.|.|-.
T Consensus        30 ~~~i~G~nGsGKSTLl~~l~Gl~   52 (220)
T cd03263          30 IFGLLGHNGAGKTTTLKMLTGEL   52 (220)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            79999999999999999999864

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=92.46  E-value=0.093  Score=53.70  Aligned_cols=24  Identities=17%  Similarity=0.220  Sum_probs=21.7

Q ss_pred             EEEEeeCCCCCChhHHHHHHhCCC
Q 004698           72 GVVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      -+++|+|+.++|||||++.|.|..
T Consensus        27 e~~~i~G~nGsGKSTLl~~i~G~~   50 (220)
T cd03265          27 EIFGLLGPNGAGKTTTIKMLTTLL   50 (220)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            379999999999999999999863

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]

Probab=92.45  E-value=0.085  Score=51.19  Aligned_cols=24  Identities=29%  Similarity=0.476  Sum_probs=21.7

Q ss_pred             EEEEEeeCCCCCChhHHHHHHhCC
Q 004698           71 IGVVSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        71 v~vVsv~G~~rtGKS~LlN~l~~~   94 (736)
                      +.+|+|+|+-+||||+|.|+|...
T Consensus         8 ~K~VailG~ESsGKStLv~kLA~~   31 (187)
T COG3172           8 VKTVAILGGESSGKSTLVNKLANI   31 (187)
T ss_pred             heeeeeecCcccChHHHHHHHHHH
Confidence            568999999999999999999854

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=92.45  E-value=8.4  Score=38.49  Aligned_cols=8  Identities=25%  Similarity=0.235  Sum_probs=2.8

Q ss_pred             HHHHHHhh
Q 004698          567 NNLQGENI  574 (736)
Q Consensus       567 ~~Le~k~~  574 (736)
                      ..++..+.
T Consensus       105 ~~~~~~l~  112 (191)
T PF04156_consen  105 QELESELE  112 (191)
T ss_pred             HHHHHHHH
Confidence            33333333

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=92.45  E-value=0.068  Score=53.75  Aligned_cols=23  Identities=13%  Similarity=0.492  Sum_probs=20.8

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      ||+|+|+.++|||||++.|.+..
T Consensus         1 iigi~G~~GsGKSTl~~~l~~~l   23 (198)
T cd02023           1 IIGIAGGSGSGKTTVAEEIIEQL   23 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh
Confidence            69999999999999999998753

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=92.44  E-value=0.095  Score=53.18  Aligned_cols=23  Identities=22%  Similarity=0.405  Sum_probs=21.4

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      +++|+|+.++||||||+.|.|..
T Consensus        28 ~~~i~G~nGsGKSTLl~~l~G~~   50 (210)
T cd03269          28 IFGLLGPNGAGKTTTIRMILGII   50 (210)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            69999999999999999999864

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=92.44  E-value=37  Score=42.56  Aligned_cols=21  Identities=33%  Similarity=0.567  Sum_probs=18.2

Q ss_pred             EEEEeeCCCCCChhHHHHHHh
Q 004698           72 GVVSVCGRARQGKSFILNQLL   92 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~   92 (736)
                      +|-.|+|+.|+|||+||+.+.
T Consensus        26 gi~lI~G~nGsGKSSIldAI~   46 (908)
T COG0419          26 GIFLIVGPNGAGKSSILDAIT   46 (908)
T ss_pred             CeEEEECCCCCcHHHHHHHHH
Confidence            356789999999999999965

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=92.43  E-value=0.38  Score=57.13  Aligned_cols=22  Identities=23%  Similarity=0.584  Sum_probs=20.8

Q ss_pred             EEEeeCCCCCChhHHHHHHhCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~   94 (736)
                      ||+++|....|||+|+|.|.|.
T Consensus         2 ii~~~GhvdhGKTtLi~aLtg~   23 (614)
T PRK10512          2 IIATAGHVDHGKTTLLQAITGV   23 (614)
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            7999999999999999999975

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=92.42  E-value=0.48  Score=54.61  Aligned_cols=27  Identities=26%  Similarity=0.491  Sum_probs=22.1

Q ss_pred             CCEEEEEeeCCCCCChhHHHHHHhCCC
Q 004698           69 EPIGVVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        69 ~~v~vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      .+..=|+|+|...+|||+|+++|+...
T Consensus        25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~   51 (474)
T PRK05124         25 KSLLRFLTCGSVDDGKSTLIGRLLHDT   51 (474)
T ss_pred             cCceEEEEECCCCCChHHHHHHHHHhc
Confidence            444457899999999999999998654

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=92.42  E-value=0.094  Score=53.61  Aligned_cols=24  Identities=29%  Similarity=0.577  Sum_probs=21.8

Q ss_pred             EEEEeeCCCCCChhHHHHHHhCCC
Q 004698           72 GVVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      -+++|+|+.|+|||+||+.|.|..
T Consensus        27 e~~~i~G~nGsGKSTLl~~l~Gl~   50 (222)
T cd03224          27 EIVALLGRNGAGKTTLLKTIMGLL   50 (222)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCC
Confidence            479999999999999999998864

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>PLN03127 Elongation factor Tu; Provisional

Probab=92.40  E-value=0.56  Score=53.63  Aligned_cols=27  Identities=19%  Similarity=0.256  Sum_probs=22.5

Q ss_pred             CCCEEEEEeeCCCCCChhHHHHHHhCC
Q 004698           68 KEPIGVVSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        68 ~~~v~vVsv~G~~rtGKS~LlN~l~~~   94 (736)
                      ..|..-|+|+|-..+|||+|++.|.+.
T Consensus        58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~   84 (447)
T PLN03127         58 TKPHVNVGTIGHVDHGKTTLTAAITKV   84 (447)
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHhH
Confidence            345555999999999999999999743

>PLN00223 ADP-ribosylation factor; Provisional

Probab=92.39  E-value=0.2  Score=49.68  Aligned_cols=52  Identities=19%  Similarity=0.196  Sum_probs=36.1

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCC
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI  138 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~  138 (736)
                      |.++|+.++|||+|++++....  |.  + . ..|.|+-+..  +     ++..+.+.+.||+|.
T Consensus        20 i~ivG~~~~GKTsl~~~l~~~~--~~--~-~-~pt~g~~~~~--~-----~~~~~~~~i~D~~Gq   71 (181)
T PLN00223         20 ILMVGLDAAGKTTILYKLKLGE--IV--T-T-IPTIGFNVET--V-----EYKNISFTVWDVGGQ   71 (181)
T ss_pred             EEEECCCCCCHHHHHHHHccCC--Cc--c-c-cCCcceeEEE--E-----EECCEEEEEEECCCC
Confidence            7899999999999999997543  42  1 1 2355654332  1     233578999999994

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=92.33  E-value=0.19  Score=54.98  Aligned_cols=23  Identities=30%  Similarity=0.411  Sum_probs=21.1

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      +++++||.|+||||||+.+.|-.
T Consensus        31 f~vllGPSGcGKSTlLr~IAGLe   53 (338)
T COG3839          31 FVVLLGPSGCGKSTLLRMIAGLE   53 (338)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68899999999999999999864

>cd01875 RhoG RhoG subfamily

Probab=92.33  E-value=0.25  Score=49.36  Aligned_cols=57  Identities=28%  Similarity=0.232  Sum_probs=39.0

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      |.|+|..++|||.|++++....  |.-.  . ..|.|.-. ..++   ..+|..+.+-+.||.|..
T Consensus         6 i~~vG~~~vGKTsli~~~~~~~--f~~~--~-~~t~~~~~-~~~~---~~~~~~~~l~i~Dt~G~e   62 (191)
T cd01875           6 CVVVGDGAVGKTCLLICYTTNA--FPKE--Y-IPTVFDNY-SAQT---AVDGRTVSLNLWDTAGQE   62 (191)
T ss_pred             EEEECCCCCCHHHHHHHHHhCC--CCcC--C-CCceEeee-EEEE---EECCEEEEEEEEECCCch
Confidence            7899999999999999998754  6321  1 23445422 2222   125667899999999954

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=92.32  E-value=0.099  Score=53.16  Aligned_cols=23  Identities=26%  Similarity=0.421  Sum_probs=21.4

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      +++|+|+.++|||||++.|.|..
T Consensus        30 ~~~l~G~nGsGKSTLl~~i~Gl~   52 (214)
T TIGR02673        30 FLFLTGPSGAGKTTLLKLLYGAL   52 (214)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            79999999999999999999864

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=92.31  E-value=0.099  Score=53.34  Aligned_cols=23  Identities=39%  Similarity=0.533  Sum_probs=21.4

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      +++|+|+.++||||||+.|.|..
T Consensus        32 ~~~l~G~nGsGKSTLl~~i~Gl~   54 (218)
T cd03255          32 FVAIVGPSGSGKSTLLNILGGLD   54 (218)
T ss_pred             EEEEEcCCCCCHHHHHHHHhCCc
Confidence            69999999999999999999864

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=92.30  E-value=0.1  Score=53.43  Aligned_cols=23  Identities=35%  Similarity=0.553  Sum_probs=21.5

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      +++|+|+.|+||||||+.|.|..
T Consensus        33 ~~~i~G~nGsGKSTLl~~i~G~~   55 (221)
T TIGR02211        33 IVAIVGSSGSGKSTLLHLLGGLD   55 (221)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            79999999999999999999874

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=92.28  E-value=0.092  Score=53.32  Aligned_cols=23  Identities=17%  Similarity=0.284  Sum_probs=21.4

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      +++|+|+.++|||+||+.|.|-.
T Consensus        27 ~~~i~G~nGsGKSTLl~~l~Gl~   49 (211)
T cd03264          27 MYGLLGPNGAGKTTLMRILATLT   49 (211)
T ss_pred             cEEEECCCCCCHHHHHHHHhCCC
Confidence            79999999999999999999863

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2

Probab=92.28  E-value=0.092  Score=52.81  Aligned_cols=21  Identities=19%  Similarity=0.493  Sum_probs=19.6

Q ss_pred             EEEeeCCCCCChhHHHHHHhC
Q 004698           73 VVSVCGRARQGKSFILNQLLG   93 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~   93 (736)
                      ||+|+|+.+||||||.+.|..
T Consensus         1 IIgI~G~sgSGKTTla~~L~~   21 (194)
T PF00485_consen    1 IIGIAGPSGSGKTTLAKRLAQ   21 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999999864

7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=92.28  E-value=0.11  Score=49.85  Aligned_cols=24  Identities=29%  Similarity=0.494  Sum_probs=21.7

Q ss_pred             EEEEeeCCCCCChhHHHHHHhCCC
Q 004698           72 GVVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      .+++|+|+.++|||+|++.|.|..
T Consensus        27 e~~~i~G~nGsGKStLl~~l~G~~   50 (144)
T cd03221          27 DRIGLVGRNGAGKSTLLKLIAGEL   50 (144)
T ss_pred             CEEEEECCCCCCHHHHHHHHcCCC
Confidence            378999999999999999999864

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=92.27  E-value=0.1  Score=53.03  Aligned_cols=23  Identities=26%  Similarity=0.381  Sum_probs=21.3

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      +++|+|+.++||||||+.|.|..
T Consensus        29 ~~~i~G~nGsGKSTLl~~l~G~~   51 (214)
T cd03292          29 FVFLVGPSGAGKSTLLKLIYKEE   51 (214)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            68999999999999999999864

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=92.27  E-value=0.16  Score=56.60  Aligned_cols=23  Identities=22%  Similarity=0.395  Sum_probs=21.5

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      +++|+|+.++||||||+.|.|-.
T Consensus        42 ~~~LlGpsGsGKSTLLr~IaGl~   64 (375)
T PRK09452         42 FLTLLGPSGCGKTTVLRLIAGFE   64 (375)
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            79999999999999999999864

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=92.25  E-value=0.098  Score=53.78  Aligned_cols=23  Identities=26%  Similarity=0.325  Sum_probs=21.5

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      +++|+|+.|+||||||+.|+|..
T Consensus        28 ~~~i~G~nGsGKSTLl~~i~G~~   50 (227)
T cd03260          28 ITALIGPSGCGKSTLLRLLNRLN   50 (227)
T ss_pred             EEEEECCCCCCHHHHHHHHHhhc
Confidence            79999999999999999999864

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=92.24  E-value=0.12  Score=59.57  Aligned_cols=22  Identities=27%  Similarity=0.537  Sum_probs=20.1

Q ss_pred             EEEEeeCCCCCChhHHHHHHhC
Q 004698           72 GVVSVCGRARQGKSFILNQLLG   93 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~~   93 (736)
                      .+|+|+|+.|+||||++..|.+
T Consensus       351 ~vIaLVGPtGvGKTTtaakLAa  372 (559)
T PRK12727        351 GVIALVGPTGAGKTTTIAKLAQ  372 (559)
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999999874

>PLN02939 transferase, transferring glycosyl groups

Probab=92.23  E-value=35  Score=42.51  Aligned_cols=100  Identities=18%  Similarity=0.189  Sum_probs=43.3

Q ss_pred             hhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHHHhhHHHHHH
Q 004698          625 RSTAAEARLAAAREQALSA---QEEVEEWKRKYGVAVREAKAALEKAAIVQE--RTSKEMQQREDVLREEFSSTLAEKEE  699 (736)
Q Consensus       625 k~~~~E~~~~~~~~q~~~~---~~E~~e~~~ky~~~~~e~kalle~~~~~~e--~~~e~~~~~~~~l~~e~~~~~~e~~~  699 (736)
                      |+..++..++.+..|++.+   -++--|+++|.+.+.    +.|+.++..--  ...+-.+.+...+++.++..-+|+..
T Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (977)
T PLN02939        301 KVENLQDLLDRATNQVEKAALVLDQNQDLRDKVDKLE----ASLKEANVSKFSSYKVELLQQKLKLLEERLQASDHEIHS  376 (977)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHH----HHHHHhhHhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            3333444444444444332   344456666666554    33444431111  12233444444444444444444444


Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHhhhhhhh
Q 004698          700 EMKEKATKIEHAEQCLTTLRLELKVSFFD  728 (736)
Q Consensus       700 ~~~~~~~k~~~~~~~~~~~~~~l~~~~~~  728 (736)
                      +++.-++.++.-...+..+..|-+.+..+
T Consensus       377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  405 (977)
T PLN02939        377 YIQLYQESIKEFQDTLSKLKEESKKRSLE  405 (977)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhccccc
Confidence            44444444444333344444444444433

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=92.21  E-value=0.1  Score=53.08  Aligned_cols=23  Identities=30%  Similarity=0.531  Sum_probs=21.2

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      +++|+|+.++||||||+.|.|..
T Consensus        27 ~~~l~G~nGsGKSTLl~~l~G~~   49 (213)
T cd03235          27 FLAIVGPNGAGKSTLLKAILGLL   49 (213)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCC
Confidence            69999999999999999999864

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=92.21  E-value=6.5  Score=43.96  Aligned_cols=116  Identities=15%  Similarity=0.164  Sum_probs=0.0

Q ss_pred             HHHHHHhhhHHHHHHHHHH-HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 004698          514 SSLMLKYRSIEDNMKLLKK-QLEDSERYKSEYL---KRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDS  589 (736)
Q Consensus       514 ~~L~~k~es~e~e~~~lk~-~Le~~e~~~~e~~---k~~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~  589 (736)
                      +.|.-+..--+..+..+.+ ++++.....+...   +..+....++......++.+...++.++...+.++..+++.=..
T Consensus       328 sqleSqr~y~e~~~~e~~qsqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~  407 (493)
T KOG0804|consen  328 SQLESQRKYYEQIMSEYEQSQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKK  407 (493)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH


Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHH
Q 004698          590 LKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAA  629 (736)
Q Consensus       590 lk~e~~e~~~~yee~~~~~~~~~~~~~~~i~~L~~k~~~~  629 (736)
                      +.+...-|+.++++.....+........+|++|+.+++++
T Consensus       408 l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDl  447 (493)
T KOG0804|consen  408 LIKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQLRDL  447 (493)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH

>PF13514 AAA_27: AAA domain

Probab=92.21  E-value=44  Score=42.90  Aligned_cols=25  Identities=28%  Similarity=0.387  Sum_probs=19.7

Q ss_pred             eeCCCCCChhHHHHHHhCCCCcccc
Q 004698           76 VCGRARQGKSFILNQLLGRSSGFQV  100 (736)
Q Consensus        76 v~G~~rtGKS~LlN~l~~~~~gF~~  100 (736)
                      |.||.=+||||+|.+|.+--=||+.
T Consensus         1 IyGpNEAGKST~l~fI~~lLFGfp~   25 (1111)
T PF13514_consen    1 IYGPNEAGKSTLLAFIRDLLFGFPT   25 (1111)
T ss_pred             CCCCCCCCHHHHHHHHHHHhcCCCC
Confidence            6899999999999997655445543

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=92.21  E-value=0.11  Score=50.78  Aligned_cols=23  Identities=30%  Similarity=0.392  Sum_probs=21.3

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      +|+|+|+.++|||+||+.|.|..
T Consensus        28 ~~~l~G~nGsGKSTLl~~i~G~~   50 (163)
T cd03216          28 VHALLGENGAGKSTLMKILSGLY   50 (163)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999999864

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=92.21  E-value=0.073  Score=54.87  Aligned_cols=23  Identities=22%  Similarity=0.291  Sum_probs=20.8

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      ||+|+|+.++|||||++.|.+..
T Consensus         1 IigI~G~sGSGKTTla~~L~~~l   23 (220)
T cd02025           1 IIGIAGSVAVGKSTTARVLQALL   23 (220)
T ss_pred             CEEeeCCCCCCHHHHHHHHHHHH
Confidence            68999999999999999998753

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=92.20  E-value=0.15  Score=52.30  Aligned_cols=24  Identities=25%  Similarity=0.398  Sum_probs=21.7

Q ss_pred             EEEEeeCCCCCChhHHHHHHhCCC
Q 004698           72 GVVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      .+++|+|+.++|||+|++.|.|..
T Consensus        32 ~~~~I~G~nGsGKStLl~~l~G~~   55 (220)
T TIGR02982        32 EIVILTGPSGSGKTTLLTLIGGLR   55 (220)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            479999999999999999999864

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=92.20  E-value=0.1  Score=54.16  Aligned_cols=24  Identities=25%  Similarity=0.300  Sum_probs=21.7

Q ss_pred             EEEEeeCCCCCChhHHHHHHhCCC
Q 004698           72 GVVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      -+++|+|+.|+||||||+.|.|..
T Consensus        29 e~~~l~G~nGsGKSTLl~~l~Gl~   52 (243)
T TIGR02315        29 EFVAIIGPSGAGKSTLLRCINRLV   52 (243)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCc
Confidence            379999999999999999999864

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=92.20  E-value=0.1  Score=51.93  Aligned_cols=21  Identities=38%  Similarity=0.438  Sum_probs=19.5

Q ss_pred             EEEeeCCCCCChhHHHHHHhC
Q 004698           73 VVSVCGRARQGKSFILNQLLG   93 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~   93 (736)
                      +|+|+||.++|||||||.+++
T Consensus        23 ~~~l~G~nG~GKSTLl~~il~   43 (176)
T cd03238          23 LVVVTGVSGSGKSTLVNEGLY   43 (176)
T ss_pred             EEEEECCCCCCHHHHHHHHhh
Confidence            689999999999999999875

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>TIGR00485 EF-Tu translation elongation factor TU

Probab=92.19  E-value=0.36  Score=54.22  Aligned_cols=109  Identities=14%  Similarity=0.163  Sum_probs=0.0

Q ss_pred             CCCEEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCcc---------ceEEeeccccccccCCCCceEEEEeecCCC
Q 004698           68 KEPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCT---------KGLWLWSAPLKRTALDGTEYNLLLLDSEGI  138 (736)
Q Consensus        68 ~~~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T---------~Giw~w~~p~~~~~~~g~~~~v~llDteG~  138 (736)
                      ..|...|+|+|...+|||+|++.|++....-.-+.......         +|+=+-...+..   ......+.|+||+|.
T Consensus         9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~---~~~~~~~~liDtpGh   85 (394)
T TIGR00485         9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEY---ETENRHYAHVDCPGH   85 (394)
T ss_pred             CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEE---cCCCEEEEEEECCch


Q ss_pred             cccCCCCccchHHHHHhhhccceEEEccCCCCchHHhhhhHHHHHH
Q 004698          139 DAYDQTGTYSTQIFSLAVLLSSMFIYNQMGGIDESAIDRLSLVTQM  184 (736)
Q Consensus       139 ~~~~~~~~~d~~IFaLa~LLSS~~IyN~~g~i~e~~l~~L~~v~el  184 (736)
                      ..+-     ...+.+++..=.-++|+.....+..++.+++.++..+
T Consensus        86 ~~f~-----~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~  126 (394)
T TIGR00485        86 ADYV-----KNMITGAAQMDGAILVVSATDGPMPQTREHILLARQV  126 (394)
T ss_pred             HHHH-----HHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHc

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=92.19  E-value=9.3  Score=35.62  Aligned_cols=103  Identities=17%  Similarity=0.299  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 004698          504 RLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSL  583 (736)
Q Consensus       504 ~l~~~i~~e~~~L~~k~es~e~e~~~lk~~Le~~e~~~~e~~k~~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L  583 (736)
                      .+++++.+.+..+...+.+++.++..+...-+.+...+-......++. .........+..+...++.+++.+=+=++.=
T Consensus        16 ~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~-~~~~~~~~~L~~el~~l~~ry~t~LellGEK   94 (120)
T PF12325_consen   16 QLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEEL-RALKKEVEELEQELEELQQRYQTLLELLGEK   94 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcch


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 004698          584 SKTVDSLKNEISDWKRKYDQVLTK  607 (736)
Q Consensus       584 ~~~le~lk~e~~e~~~~yee~~~~  607 (736)
                      ...++.|+..+.+++..|...+..
T Consensus        95 ~E~veEL~~Dv~DlK~myr~Qi~~  118 (120)
T PF12325_consen   95 SEEVEELRADVQDLKEMYREQIDQ  118 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	736
1dg3_A	592	Structure Of Human Guanylate Binding Protein-1 In N		5e-52
2b8w_A	328	Crystal-Structure Of The N-Terminal Large Gtpase Do		1e-47
3q5e_A	447	Crystal Structure Of Human Atlastin-1 (Residues 1-4		5e-11
4idq_A	447	Human Atlastin-1 1-446, N440t, Gdpalf4- Length = 44		5e-11
4idn_A	457	Human Atlastin-1 1-446, C-his6, Gppnhp Length = 457		5e-11
3qnu_A	459	Crystal Structure Of The Cytosolic Domain Of Human		6e-11
4idp_A	447	Human Atlastin-1 1-446, N440t, Gppnhp Length = 447		1e-09
3q5d_A	447	Crystal Structure Of Human Atlastin-1 (Residues 1-4		1e-09

>pdb|1DG3|A Chain A, Structure Of Human Guanylate Binding Protein-1 In Nucleotide Free Form Length = 592

Iteration: 1
 Score =  202 bits (515), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 171/599 (28%), Positives = 295/599 (49%), Gaps = 57/599 (9%)
Query: 36  VTGPARPIRLVYCDEKGKFRMDPEAVAALQLVKEPIGVVSVCGRARQGKSFILNQLLGRS 95
           +TGP   I     +  G+   +PEA+  L  + +P+ VV++ G  R GKS+++N+L G+ 
Sbjct: 7   MTGPMCLIE----NTNGRLMANPEALKILSAITQPMVVVAIVGLYRTGKSYLMNKLAGKK 62
Query: 96  SGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI-DAYDQTGTYSTQIFSL 154
            GF + ST +  TKG+W+W  P  +       + L+LLD+EG+ D         + IF+L
Sbjct: 63  KGFSLGSTVQSHTKGIWMWCVPHPKKP----GHILVLLDTEGLGDVEKGDNQNDSWIFAL 118
Query: 155 AVLLSSMFIYNQMGGIDESAIDRLSLVTQMTKHIRIRASGGKTT-----PSELGQFSPIF 209
           AVLLSS F+YN +G I++ A+D+L  VT++T  IR ++S  +        ++   F P F
Sbjct: 119 AVLLSSTFVYNSIGTINQQAMDQLYYVTELTHRIRSKSSPDENENEVEDSADFVSFFPDF 178
Query: 210 VWLLRDFYLDLVEDNRKITPRDYLEIALRPVQGSGRDIAAKNEIRDSIRALFPDRECFTL 269
           VW LRDF LDL  D + +TP +YL  +L+  +G+ +     N  R  IR  FP ++CF  
Sbjct: 179 VWTLRDFSLDLEADGQPLTPDEYLTYSLKLKKGTSQKDETFNLPRLCIRKFFPKKKCFVF 238
Query: 270 VRPLSNENELQRLDQISLDRLRPEFRAGLDALTKFVFERTRPKQV-GATVLTGPVLIGIT 328
            RP+ +  +L +L+++  + L PEF   +     ++F  ++ K + G   + GP L  + 
Sbjct: 239 DRPV-HRRKLAQLEKLQDEELDPEFVQQVADFCSYIFSNSKTKTLSGGIQVNGPRLESLV 297
Query: 329 ESYLDAINNGAVPTISSSWQSVEEAECRRAYDSATETYMSTFDRSK--PPEEVA-LGEAH 385
            +Y++AI++G +P + ++  ++ + E   A   A   Y     +    P E +  L + H
Sbjct: 298 LTYVNAISSGDLPCMENAVLALAQIENSAAVQKAIAHYEQQMGQKVQLPTESLQELLDLH 357
Query: 386 EAAVQKALAVYNAGAVGVGLARKKYEGLLQKFFRKAFEDH-----KKNVYMEADIRCSSA 440
             + ++A+ V+      +  + K  + L QK      E       K+N    +D RCS  
Sbjct: 358 RDSEREAIEVF------IRSSFKDVDHLFQKELAAQLEKKRDDFCKQNQEASSD-RCSGL 410
Query: 441 IQ----SMERKLRAACHSSDASIDNVVKVLDGLISE-YETSCHGPGKWQKLATFL--QQS 493
           +Q     +E +++A  +S        V+ L  L  + YE    G    + L T+L  ++S
Sbjct: 411 LQVIFSPLEEEVKAGIYSKPGGYRLFVQKLQDLKKKYYEEPRKGIQAEEILQTYLKSKES 470
Query: 494 SEGPILDLVKRLID---QIGSERSSLMLKYRSIEDNMKLL-------KKQLEDSERYKSE 543
               IL   + L +   +I  ER    +K  S + + K+L       ++ +E  ER   E
Sbjct: 471 MTDAILQTDQTLTEKEKEIEVER----VKAESAQASAKMLHEMQRKNEQMMEQKERSYQE 526
Query: 544 YLKRYDDAI-NDKKKLADDYTSRIN-NLQGENISLREKSSSLSKTVDSLKNEISDWKRK 600
           +LK+  + + ND+ +L  +    +   LQ +   L+E      K    +KNEI D + K
Sbjct: 527 HLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKE---GFQKESRIMKNEIQDLQTK 582

>pdb|2B8W|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of Human Guanylate Binding Protein 1 (Hgbp1) In Complex With GmpALF4 Length = 328

Iteration: 1
 Score =  187 bits (476), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 106/318 (33%), Positives = 180/318 (56%), Gaps = 16/318 (5%)
Query: 36  VTGPARPIRLVYCDEKGKFRMDPEAVAALQLVKEPIGVVSVCGRARQGKSFILNQLLGRS 95
           +TGP   I     +  G+   +PEA+  L  + +P+ VV++ G  R GKS+++N+L G+ 
Sbjct: 18  MTGPMCLIE----NTNGRLMANPEALKILSAITQPMVVVAIVGLYRTGKSYLMNKLAGKK 73
Query: 96  SGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI-DAYDQTGTYSTQIFSL 154
            GF + ST +  TKG+W+W  P  +       + L+LLD+EG+ D         + IF+L
Sbjct: 74  KGFSLGSTVQSHTKGIWMWCVPHPKKP----GHILVLLDTEGLGDVEKGDNQNDSWIFAL 129
Query: 155 AVLLSSMFIYNQMGGIDESAIDRLSLVTQMTKHIRIRASGGKT-----TPSELGQFSPIF 209
           AVLLSS F+YN +G I++ A+D+L  VT++T  IR ++S  +        ++   F P F
Sbjct: 130 AVLLSSTFVYNSIGTINQQAMDQLYYVTELTHRIRSKSSPDENENEVEDSADFVSFFPDF 189
Query: 210 VWLLRDFYLDLVEDNRKITPRDYLEIALRPVQGSGRDIAAKNEIRDSIRALFPDRECFTL 269
           VW LRDF LDL  D + +TP +YL  +L+  +G+ +     N  R  IR  FP ++CF  
Sbjct: 190 VWTLRDFSLDLEADGQPLTPDEYLTYSLKLKKGTSQKDETFNLPRLCIRKFFPKKKCFVF 249
Query: 270 VRPLSNENELQRLDQISLDRLRPEFRAGLDALTKFVFERTRPKQV-GATVLTGPVLIGIT 328
            RP+ +  +L +L+++  + L PEF   +     ++F  ++ K + G   + GP L  + 
Sbjct: 250 DRPV-HRRKLAQLEKLQDEELDPEFVQQVADFCSYIFSNSKTKTLSGGIQVNGPRLESLV 308
Query: 329 ESYLDAINNGAVPTISSS 346
            +Y++AI++G +P + ++
Sbjct: 309 LTYVNAISSGDLPCMENA 326

>pdb|3Q5E|A Chain A, Crystal Structure Of Human Atlastin-1 (Residues 1-447) Bound To Gdp, Crystal Form 2 Length = 447

Iteration: 1
 Score = 66.6 bits (161), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 86/372 (23%), Positives = 151/372 (40%), Gaps = 53/372 (14%)
Query: 40  ARPIRLVYCDEKGKFRMDPEAVAALQLVK----EPIGVVSVCGRARQGKSFILNQLL--- 92
           A P++++   +   F +D  A+  + L +    + +  VSV G  R+GKSF+++ +L   
Sbjct: 32  AGPVQVLIVKDDHSFELDETALNRILLSEAVRDKEVVAVSVAGAFRKGKSFLMDFMLRYM 91
Query: 93  -GRSSGFQVASTHRPCT------------KGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139
             + S   V   + P T             G+ +WS        DG +  +LL+D++G  
Sbjct: 92  YNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMDTQGTF 151
Query: 140 AYDQTGTYSTQIFSLAVLLSSMFIYNQMGGIDESAIDRLSLVTQMTKHIRIRASGGKTTP 199
               T   S  +F+L+ ++SS+ +YN    + E  +  L L T+           G+   
Sbjct: 152 DSQSTLRDSATVFALSTMISSIQVYNLSQNVQEDDLQHLQLFTEY----------GRLAM 201
Query: 200 SE--LGQFSPIFVWLLRDFYLDLVEDNRKITPRDYLEIALRPVQGSGRDIAAKNEIRDSI 257
            E  L  F  + ++L+RD+               +LE  L+    SG        +R  I
Sbjct: 202 EETFLKPFQSL-IFLVRDWSFPYEFSYGADGGAKFLEKRLKV---SGNQHEELQNVRKHI 257
Query: 258 RALFPDRECFTLVRP----LSNENELQRLDQISLDRLRPEFRAGLDALTKFVF--ERTRP 311
            + F +  CF L  P     +N N   +L +I       EF   L  L  ++   E    
Sbjct: 258 HSCFTNISCFLLPHPGLKVATNPNFDGKLKEID-----DEFIKNLKILIPWLLSPESLDI 312
Query: 312 KQVGATVLTGPVLIGITESYLDAINNGAVPTISSSWQSVEEAECRRAYDSATETYMSTFD 371
           K++    +T   L+   ++Y+       +P   S  Q+  EA    A  +A +TY     
Sbjct: 313 KEINGNKITCRGLVEYFKAYIKIYQGEELPHPKSMLQATAEANNLAAVATAKDTY----- 367
Query: 372 RSKPPEEVALGE 383
            +K  EE+  G+
Sbjct: 368 -NKKMEEICGGD 378

>pdb|4IDQ|A Chain A, Human Atlastin-1 1-446, N440t, Gdpalf4- Length = 447

Iteration: 1
 Score = 66.6 bits (161), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 86/372 (23%), Positives = 151/372 (40%), Gaps = 53/372 (14%)
Query: 40  ARPIRLVYCDEKGKFRMDPEAVAALQLVK----EPIGVVSVCGRARQGKSFILNQLL--- 92
           A P++++   +   F +D  A+  + L +    + +  VSV G  R+GKSF+++ +L   
Sbjct: 33  AGPVQVLIVKDDHSFELDETALNRILLSEAVRDKEVVAVSVAGAFRKGKSFLMDFMLRYM 92
Query: 93  -GRSSGFQVASTHRPCT------------KGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139
             + S   V   + P T             G+ +WS        DG +  +LL+D++G  
Sbjct: 93  YNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMDTQGTF 152
Query: 140 AYDQTGTYSTQIFSLAVLLSSMFIYNQMGGIDESAIDRLSLVTQMTKHIRIRASGGKTTP 199
               T   S  +F+L+ ++SS+ +YN    + E  +  L L T+           G+   
Sbjct: 153 DSQSTLRDSATVFALSTMISSIQVYNLSQNVQEDDLQHLQLFTEY----------GRLAM 202
Query: 200 SE--LGQFSPIFVWLLRDFYLDLVEDNRKITPRDYLEIALRPVQGSGRDIAAKNEIRDSI 257
            E  L  F  + ++L+RD+               +LE  L+    SG        +R  I
Sbjct: 203 EETFLKPFQSL-IFLVRDWSFPYEFSYGADGGAKFLEKRLKV---SGNQHEELQNVRKHI 258
Query: 258 RALFPDRECFTLVRP----LSNENELQRLDQISLDRLRPEFRAGLDALTKFVF--ERTRP 311
            + F +  CF L  P     +N N   +L +I       EF   L  L  ++   E    
Sbjct: 259 HSCFTNISCFLLPHPGLKVATNPNFDGKLKEID-----DEFIKNLKILIPWLLSPESLDI 313
Query: 312 KQVGATVLTGPVLIGITESYLDAINNGAVPTISSSWQSVEEAECRRAYDSATETYMSTFD 371
           K++    +T   L+   ++Y+       +P   S  Q+  EA    A  +A +TY     
Sbjct: 314 KEINGNKITCRGLVEYFKAYIKIYQGEELPHPKSMLQATAEANNLAAVATAKDTY----- 368
Query: 372 RSKPPEEVALGE 383
            +K  EE+  G+
Sbjct: 369 -NKKMEEICGGD 379

>pdb|4IDN|A Chain A, Human Atlastin-1 1-446, C-his6, Gppnhp Length = 457

Iteration: 1
 Score = 66.2 bits (160), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 86/372 (23%), Positives = 151/372 (40%), Gaps = 53/372 (14%)
Query: 40  ARPIRLVYCDEKGKFRMDPEAVAALQLVK----EPIGVVSVCGRARQGKSFILNQLL--- 92
           A P++++   +   F +D  A+  + L +    + +  VSV G  R+GKSF+++ +L   
Sbjct: 32  AGPVQVLIVKDDHSFELDETALNRILLSEAVRDKEVVAVSVAGAFRKGKSFLMDFMLRYM 91
Query: 93  -GRSSGFQVASTHRPCT------------KGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139
             + S   V   + P T             G+ +WS        DG +  +LL+D++G  
Sbjct: 92  YNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMDTQGTF 151
Query: 140 AYDQTGTYSTQIFSLAVLLSSMFIYNQMGGIDESAIDRLSLVTQMTKHIRIRASGGKTTP 199
               T   S  +F+L+ ++SS+ +YN    + E  +  L L T+           G+   
Sbjct: 152 DSQSTLRDSATVFALSTMISSIQVYNLSQNVQEDDLQHLQLFTEY----------GRLAM 201
Query: 200 SE--LGQFSPIFVWLLRDFYLDLVEDNRKITPRDYLEIALRPVQGSGRDIAAKNEIRDSI 257
            E  L  F  + ++L+RD+               +LE  L+    SG        +R  I
Sbjct: 202 EETFLKPFQSL-IFLVRDWSFPYEFSYGADGGAKFLEKRLKV---SGNQHEELQNVRKHI 257
Query: 258 RALFPDRECFTLVRP----LSNENELQRLDQISLDRLRPEFRAGLDALTKFVF--ERTRP 311
            + F +  CF L  P     +N N   +L +I       EF   L  L  ++   E    
Sbjct: 258 HSCFTNISCFLLPHPGLKVATNPNFDGKLKEID-----DEFIKNLKILIPWLLSPESLDI 312
Query: 312 KQVGATVLTGPVLIGITESYLDAINNGAVPTISSSWQSVEEAECRRAYDSATETYMSTFD 371
           K++    +T   L+   ++Y+       +P   S  Q+  EA    A  +A +TY     
Sbjct: 313 KEINGNKITCRGLVEYFKAYIKIYQGEELPHPKSMLQATAEANNLAAVATAKDTY----- 367
Query: 372 RSKPPEEVALGE 383
            +K  EE+  G+
Sbjct: 368 -NKKMEEICGGD 378

>pdb|3QNU|A Chain A, Crystal Structure Of The Cytosolic Domain Of Human Atlastin-1 In Complex With Gdp, Hexagonal Form Length = 459

Iteration: 1
 Score = 66.2 bits (160), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 86/372 (23%), Positives = 151/372 (40%), Gaps = 53/372 (14%)
Query: 40  ARPIRLVYCDEKGKFRMDPEAVAALQLVK----EPIGVVSVCGRARQGKSFILNQLL--- 92
           A P++++   +   F +D  A+  + L +    + +  VSV G  R+GKSF+++ +L   
Sbjct: 44  AGPVQVLIVKDDHSFELDETALNRILLSEAVRDKEVVAVSVAGAFRKGKSFLMDFMLRYM 103
Query: 93  -GRSSGFQVASTHRPCT------------KGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139
             + S   V   + P T             G+ +WS        DG +  +LL+D++G  
Sbjct: 104 YNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMDTQGTF 163
Query: 140 AYDQTGTYSTQIFSLAVLLSSMFIYNQMGGIDESAIDRLSLVTQMTKHIRIRASGGKTTP 199
               T   S  +F+L+ ++SS+ +YN    + E  +  L L T+           G+   
Sbjct: 164 DSQSTLRDSATVFALSTMISSIQVYNLSQNVQEDDLQHLQLFTEY----------GRLAM 213
Query: 200 SE--LGQFSPIFVWLLRDFYLDLVEDNRKITPRDYLEIALRPVQGSGRDIAAKNEIRDSI 257
            E  L  F  + ++L+RD+               +LE  L+    SG        +R  I
Sbjct: 214 EETFLKPFQSL-IFLVRDWSFPYEFSYGADGGAKFLEKRLKV---SGNQHEELQNVRKHI 269
Query: 258 RALFPDRECFTLVRP----LSNENELQRLDQISLDRLRPEFRAGLDALTKFVF--ERTRP 311
            + F +  CF L  P     +N N   +L +I       EF   L  L  ++   E    
Sbjct: 270 HSCFTNISCFLLPHPGLKVATNPNFDGKLKEID-----DEFIKNLKILIPWLLSPESLDI 324
Query: 312 KQVGATVLTGPVLIGITESYLDAINNGAVPTISSSWQSVEEAECRRAYDSATETYMSTFD 371
           K++    +T   L+   ++Y+       +P   S  Q+  EA    A  +A +TY     
Sbjct: 325 KEINGNKITCRGLVEYFKAYIKIYQGEELPHPKSMLQATAEANNLAAVATAKDTY----- 379
Query: 372 RSKPPEEVALGE 383
            +K  EE+  G+
Sbjct: 380 -NKKMEEICGGD 390

>pdb|4IDP|A Chain A, Human Atlastin-1 1-446, N440t, Gppnhp Length = 447

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 85/372 (22%), Positives = 145/372 (38%), Gaps = 53/372 (14%)
Query: 40  ARPIRLVYCDEKGKFRMDPEAVAALQLVK----EPIGVVSVCGRARQGKSFILNQLLGRS 95
           A P++++   +   F +D  A+  + L +    + +  VSV G  R+GKSF+ +  L   
Sbjct: 33  AGPVQVLIVKDDHSFELDETALNRILLSEAVRDKEVVAVSVAGAFRKGKSFLXDFXLRYX 92
Query: 96  ----------------SGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139
                           +GF         T G+ +WS        DG +  +LL D++G  
Sbjct: 93  YNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLXDTQGTF 152
Query: 140 AYDQTGTYSTQIFSLAVLLSSMFIYNQMGGIDESAIDRLSLVTQMTKHIRIRASGGKTTP 199
               T   S  +F+L+  +SS+ +YN    + E  +  L L T+           G+   
Sbjct: 153 DSQSTLRDSATVFALSTXISSIQVYNLSQNVQEDDLQHLQLFTEY----------GRLAX 202
Query: 200 SE--LGQFSPIFVWLLRDFYLDLVEDNRKITPRDYLEIALRPVQGSGRDIAAKNEIRDSI 257
            E  L  F  + ++L+RD+               +LE  L+    SG        +R  I
Sbjct: 203 EETFLKPFQSL-IFLVRDWSFPYEFSYGADGGAKFLEKRLKV---SGNQHEELQNVRKHI 258
Query: 258 RALFPDRECFTLVRP----LSNENELQRLDQISLDRLRPEFRAGLDALTKFVF--ERTRP 311
            + F +  CF L  P     +N N   +L +I       EF   L  L  ++   E    
Sbjct: 259 HSCFTNISCFLLPHPGLKVATNPNFDGKLKEID-----DEFIKNLKILIPWLLSPESLDI 313
Query: 312 KQVGATVLTGPVLIGITESYLDAINNGAVPTISSSWQSVEEAECRRAYDSATETYMSTFD 371
           K++    +T   L+   ++Y+       +P   S  Q+  EA    A  +A +TY     
Sbjct: 314 KEINGNKITCRGLVEYFKAYIKIYQGEELPHPKSXLQATAEANNLAAVATAKDTY----- 368
Query: 372 RSKPPEEVALGE 383
            +K  EE+  G+
Sbjct: 369 -NKKXEEICGGD 379

>pdb|3Q5D|A Chain A, Crystal Structure Of Human Atlastin-1 (Residues 1-447) Bound To Gdp, Crystal Form 1 Length = 447

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 85/372 (22%), Positives = 145/372 (38%), Gaps = 53/372 (14%)
Query: 40  ARPIRLVYCDEKGKFRMDPEAVAALQLVK----EPIGVVSVCGRARQGKSFILNQLLGRS 95
           A P++++   +   F +D  A+  + L +    + +  VSV G  R+GKSF+ +  L   
Sbjct: 32  AGPVQVLIVKDDHSFELDETALNRILLSEAVRDKEVVAVSVAGAFRKGKSFLXDFXLRYX 91
Query: 96  ----------------SGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID 139
                           +GF         T G+ +WS        DG +  +LL D++G  
Sbjct: 92  YNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLXDTQGTF 151
Query: 140 AYDQTGTYSTQIFSLAVLLSSMFIYNQMGGIDESAIDRLSLVTQMTKHIRIRASGGKTTP 199
               T   S  +F+L+  +SS+ +YN    + E  +  L L T+           G+   
Sbjct: 152 DSQSTLRDSATVFALSTXISSIQVYNLSQNVQEDDLQHLQLFTEY----------GRLAX 201
Query: 200 SE--LGQFSPIFVWLLRDFYLDLVEDNRKITPRDYLEIALRPVQGSGRDIAAKNEIRDSI 257
            E  L  F  + ++L+RD+               +LE  L+    SG        +R  I
Sbjct: 202 EETFLKPFQSL-IFLVRDWSFPYEFSYGADGGAKFLEKRLKV---SGNQHEELQNVRKHI 257
Query: 258 RALFPDRECFTLVRP----LSNENELQRLDQISLDRLRPEFRAGLDALTKFVF--ERTRP 311
            + F +  CF L  P     +N N   +L +I       EF   L  L  ++   E    
Sbjct: 258 HSCFTNISCFLLPHPGLKVATNPNFDGKLKEID-----DEFIKNLKILIPWLLSPESLDI 312
Query: 312 KQVGATVLTGPVLIGITESYLDAINNGAVPTISSSWQSVEEAECRRAYDSATETYMSTFD 371
           K++    +T   L+   ++Y+       +P   S  Q+  EA    A  +A +TY     
Sbjct: 313 KEINGNKITCRGLVEYFKAYIKIYQGEELPHPKSXLQATAEANNLAAVATAKDTY----- 367
Query: 372 RSKPPEEVALGE 383
            +K  EE+  G+
Sbjct: 368 -NKKXEEICGGD 378

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	736
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	1e-112
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	1e-06
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	8e-88
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-19
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-12
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-11
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-11
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-06
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-07
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	3e-05
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	1e-06
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	6e-04
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	5e-06
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	1e-05
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	4e-05
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	1e-05
4akv_A	386	Sorting nexin-33; transport protein, organelle bio	7e-05

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* Length = 592

 Score =  351 bits (902), Expect = e-112
 Identities = 153/587 (26%), Positives = 278/587 (47%), Gaps = 32/587 (5%)

Query: 40  ARPIRLVYCDEKGKFRMDPEAVAALQLVKEPIGVVSVCGRARQGKSFILNQLLGRSSGFQ 99
             P+ L+  +  G+   +PEA+  L  + +P+ VV++ G  R GKS+++N+L G+  GF 
Sbjct: 8   TGPMCLIE-NTNGRLMANPEALKILSAITQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFS 66

Query: 100 VASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI-DAYDQTGTYSTQIFSLAVLL 158
           + ST +  TKG+W+W  P          + L+LLD+EG+ D         + IF+LAVLL
Sbjct: 67  LGSTVQSHTKGIWMWCVPHP----KKPGHILVLLDTEGLGDVEKGDNQNDSWIFALAVLL 122

Query: 159 SSMFIYNQMGGIDESAIDRLSLVTQMTKHIRIRASGGKTT-----PSELGQFSPIFVWLL 213
           SS F+YN +G I++ A+D+L  VT++T  IR ++S  +        ++   F P FVW L
Sbjct: 123 SSTFVYNSIGTINQQAMDQLYYVTELTHRIRSKSSPDENENEVEDSADFVSFFPDFVWTL 182

Query: 214 RDFYLDLVEDNRKITPRDYLEIALRPVQGSGRDIAAKNEIRDSIRALFPDRECFTLVRPL 273
           RDF LDL  D + +TP +YL  +L+  +G+ +     N  R  IR  FP ++CF   RP 
Sbjct: 183 RDFSLDLEADGQPLTPDEYLTYSLKLKKGTSQKDETFNLPRLCIRKFFPKKKCFVFDRP- 241

Query: 274 SNENELQRLDQISLDRLRPEFRAGLDALTKFVFERTRPKQV-GATVLTGPVLIGITESYL 332
            +  +L +L+++  + L PEF   +     ++F  ++ K + G   + GP L  +  +Y+
Sbjct: 242 VHRRKLAQLEKLQDEELDPEFVQQVADFCSYIFSNSKTKTLSGGIQVNGPRLESLVLTYV 301

Query: 333 DAINNGAVPTISSSWQSVEEAECRRAYDSATETY---MSTFDRSKPPEEVALGEAHEAAV 389
           +AI++G +P + ++  ++ + E   A   A   Y   M    +        L + H  + 
Sbjct: 302 NAISSGDLPCMENAVLALAQIENSAAVQKAIAHYEQQMGQKVQLPTESLQELLDLHRDSE 361

Query: 390 QKALAVYNAGAVGVGLARKKYEGLLQKFFRKAFEDHKKNVYMEADIRCSSAIQ----SME 445
           ++A+ V+             ++  L     K  +D  K     +  RCS  +Q     +E
Sbjct: 362 REAIEVFI--RSSFKDVDHLFQKELAAQLEKKRDDFCKQNQEASSDRCSGLLQVIFSPLE 419

Query: 446 RKLRAACHSSDASIDNVVKVLDGLISEY-ETSCHGPGKWQKLATFLQ--QSSEGPILDLV 502
            +++A  +S        V+ L  L  +Y E    G    + L T+L+  +S    IL   
Sbjct: 420 EEVKAGIYSKPGGYRLFVQKLQDLKKKYYEEPRKGIQAEEILQTYLKSKESMTDAILQTD 479

Query: 503 KRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDY 562
           + L ++   E     +K  S + + K+L +    +E+   +  + Y + +    +  ++ 
Sbjct: 480 QTLTEKE-KEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMEND 538

Query: 563 TSRINNLQGENISLREKS------SSLSKTVDSLKNEISDWKRKYDQ 603
             ++   Q   ++L+ +           K    +KNEI D + K  +
Sbjct: 539 RVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQTKMRR 585

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* Length = 592

 Score = 50.7 bits (120), Expect = 1e-06
 Identities = 42/246 (17%), Positives = 95/246 (38%), Gaps = 18/246 (7%)

Query: 476 SCHGPGKWQKLATFLQQSSEGPILDLVKRLIDQIGSERSSLMLK--YRSIEDNMKLLKKQ 533
             H   + + +  F++ S +       K L  Q+  +R     +    S +    LL+  
Sbjct: 355 DLHRDSEREAIEVFIRSSFKDVDHLFQKELAAQLEKKRDDFCKQNQEASSDRCSGLLQVI 414

Query: 534 LEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNE 593
               E    E +K    +     +L       +     E      ++  + +T    K  
Sbjct: 415 FSPLE----EEVKAGIYSKPGGYRLFVQKLQDLKKKYYEEPRKGIQAEEILQTYLKSKES 470

Query: 594 ISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRK 653
           ++D   + DQ LT+++        EIEV + ++ +A+A      E     ++ +E+ +R 
Sbjct: 471 MTDAILQTDQTLTEKE-------KEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERS 523

Query: 654 YGVAVREAKAALEK-----AAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKI 708
           Y   +++    +E          +   + ++Q++E +L+E F       + E+++  TK+
Sbjct: 524 YQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQTKM 583

Query: 709 EHAEQC 714
              + C
Sbjct: 584 RRRKAC 589

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A* Length = 447

 Score =  282 bits (722), Expect = 8e-88
 Identities = 83/446 (18%), Positives = 162/446 (36%), Gaps = 45/446 (10%)

Query: 10  KDSSPYNSLQPSTSPSSSRLPLNSTPVTGPARPIRLVYCDEKGKFRMDPEAVAALQLVKE 69
           +D + +      T   SS            A P++++   +   F +D  A+  + L + 
Sbjct: 6   RDRNSWGGFSEKTYEWSS----EEEEPVKKAGPVQVLIVKDDHSFELDETALNRILLSEA 61

Query: 70  ----PIGVVSVCGRARQGKSFILNQLLGRS----------------SGFQVASTHRPCTK 109
                +  VSV G  R+GKSF+++ +L                   +GF         T 
Sbjct: 62  VRDKEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETT 121

Query: 110 GLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYDQTGTYSTQIFSLAVLLSSMFIYNQMGG 169
           G+ +WS        DG +  +LL+D++G      T   S  +F+L+ ++SS+ +YN    
Sbjct: 122 GIQIWSEIFLINKPDGKKVAVLLMDTQGTFDSQSTLRDSATVFALSTMISSIQVYNLSQN 181

Query: 170 IDESAIDRLSLVTQMTKHIRIRASGGKTTPSELGQFSPIFVWLLRDFYLDLVEDNRKITP 229
           + E  +  L L T+  +                 +     ++L+RD+             
Sbjct: 182 VQEDDLQHLQLFTEYGRLAM---------EETFLKPFQSLIFLVRDWSFPYEFSYGADGG 232

Query: 230 RDYLEIALRPVQGSGRDIAAKNEIRDSIRALFPDRECFTLVRPLSNENELQRLDQISLDR 289
             +LE  L+       ++     +R  I + F +  CF L  P          D   L  
Sbjct: 233 AKFLEKRLKVSGNQHEEL---QNVRKHIHSCFTNISCFLLPHPGLKVATNPNFDG-KLKE 288

Query: 290 LRPEFRAGLDALTKFVF--ERTRPKQVGATVLTGPVLIGITESYLDAINNGAVPTISSSW 347
           +  EF   L  L  ++   E    K++    +T   L+   ++Y+       +P   S  
Sbjct: 289 IDDEFIKNLKILIPWLLSPESLDIKEINGNKITCRGLVEYFKAYIKIYQGEELPHPKSML 348

Query: 348 QSVEEAECRRAYDSATETYMSTFDRSKPPEEV-----ALGEAHEAAVQKALAVYNAGA-V 401
           Q+  EA    A  +A +TY    +     ++       L   H    ++++ ++     +
Sbjct: 349 QATAEANNLAAVATAKDTYNKKMEEICGGDKPFLAPNDLQTKHLQLKEESVKLFRGVKKM 408

Query: 402 GVGLARKKYEGLLQKFFRKAFEDHKK 427
           G     ++Y   L+    + +  + K
Sbjct: 409 GGEEFSRRYLQQLESEIDELYIQYIK 434

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 92.6 bits (229), Expect = 2e-19
 Identities = 104/628 (16%), Positives = 182/628 (28%), Gaps = 218/628 (34%)

Query: 4   KFFGKGKDSSPYNSL---------QPS---TSPSSSRLPLNSTPVTGPARPIRLVYCDEK 51
           KF  +    + Y  L         QPS         R  L +         +        
Sbjct: 81  KFVEEVLRIN-YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS------- 132

Query: 52  GKFRMDPEAVAALQ--LVK-EPIGVVSVCGRARQGKSFILNQLLGRSSGFQ--------- 99
              R   +    L+  L++  P   V + G    GK+++   +   S   Q         
Sbjct: 133 ---R--LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVC-LSYKVQCKMDFKIFW 186

Query: 100 --VASTHRP--CTKGLW-LW---------------SAPL--------KRTALDGTEYN-- 129
             + + + P    + L  L                +  L         R  L    Y   
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246

Query: 130 LLLLD----SEGIDAYDQTGTYSTQIFSLAVLLSSMFIYNQMGGIDESAIDRLSLVTQMT 185
           LL+L     ++  +A++          S  +LL++           +   D LS  T  T
Sbjct: 247 LLVLLNVQNAKAWNAFN---------LSCKILLTTR---------FKQVTDFLSAAT--T 286

Query: 186 KHIRIRASGGKTTPSE-LGQFSPIFVWLLRDFYLDLVEDNRKITPRDYLEIALRPVQGSG 244
            HI +       TP E          +L      DL  +     P     +++       
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLK---YLDCRPQ-DLPREVLTTNP---RRLSI------- 332

Query: 245 RDIAAKNEIRDSIRALFPDR-ECFTLVRPLSNENELQRLDQISLDRLRP-EFRAGLDALT 302
             IA    IRD          + +  V    N ++L  + + SL+ L P E+R   D L 
Sbjct: 333 --IAE--SIRD-----GLATWDNWKHV----NCDKLTTIIESSLNVLEPAEYRKMFDRL- 378

Query: 303 KFVFERTRPKQVGATVLTGPVLIGITESYLDAINNGAVPTISSSWQSVEEAEC------- 355
             VF    P               I               +S  W  V +++        
Sbjct: 379 -SVF----PPSA-----------HIPTI-----------LLSLIWFDVIKSDVMVVVNKL 411

Query: 356 -------RRAYDSATETYMSTFD-RSKPPEEVALGEAHEAAVQKALAVYNAGAVGVGLAR 407
                  ++  +S         + + K   E AL   H + V      YN          
Sbjct: 412 HKYSLVEKQPKESTISIPSIYLELKVKLENEYAL---HRSIVDH----YN--------IP 456

Query: 408 KKYEGLLQKFFRKAFED---------HKKNVYMEADIRCSSAI----QSMERKLRAACHS 454
           K ++          + D         H KN+     +     +    + +E+K+R    +
Sbjct: 457 KTFD---SDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTA 513

Query: 455 SDA--SIDNVVKVLD---GLISEYETSCHGPGKWQKLATFLQQSSE----GPILDLVKRL 505
            +A  SI N ++ L      I + +           +  FL +  E        DL+   
Sbjct: 514 WNASGSILNTLQQLKFYKPYICDNDPKYE--RLVNAILDFLPKIEENLICSKYTDLL--- 568

Query: 506 IDQIGSERSSLMLKYRSI-EDNMKLLKK 532
             +I      LM +  +I E+  K +++
Sbjct: 569 --RIA-----LMAEDEAIFEEAHKQVQR 589

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 68.7 bits (167), Expect = 4e-12
 Identities = 79/553 (14%), Positives = 162/553 (29%), Gaps = 165/553 (29%)

Query: 217 YLDLVEDNRKITPRDYLEIALRPVQGSGRDIAAKNEIRDSIRALFPDRECFTLVRPLSNE 276
           ++D      +   +D L +          +   K +++D  +++    E   ++      
Sbjct: 6   HMDFETGEHQYQYKDILSVFEDAFV---DNFDCK-DVQDMPKSILSKEEIDHIIMSKDAV 61

Query: 277 NELQRLDQISLDRLRPEFRAGLDALTKFVFERTRPKQVGATVLTGPVLIGITESYLDAIN 336
           +   RL       L        + + KFV E  R                   +Y     
Sbjct: 62  SGTLRL----FWTLL---SKQEEMVQKFVEEVLRI------------------NY----- 91

Query: 337 NGAVPTISSSWQSVEEAECRRAYDSATETYMSTFDRSKPPEEVALGEAHEAAVQKALAVY 396
                 + S  +     E R+     T  Y+   DR                      +Y
Sbjct: 92  ----KFLMSPIK----TEQRQPSMM-TRMYIEQRDR----------------------LY 120

Query: 397 NAGAVGVGLARKKYEGLLQKFFRKAFEDHKKNVYMEADIRCSSAIQSMERKLRAACHSSD 456
           N                 Q F        K NV           ++    +LR A     
Sbjct: 121 NDN---------------QVF-------AKYNVSRLQPYL---KLRQALLELRPA----- 150

Query: 457 ASIDNVVKVLDG--------LISE----YETSCHGPGK--WQKLATFLQQSSEGPILDLV 502
               NV  ++DG        +  +    Y+  C    K  W  L      +S   +L+++
Sbjct: 151 ---KNV--LIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLK---NCNSPETVLEML 202

Query: 503 KRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYL--KRY-------DDAIN 553
           ++L+ QI          + S  D+   +K ++   +      L  K Y        + + 
Sbjct: 203 QKLLYQIDPN-------WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN-VQ 254

Query: 554 DKKKL-ADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAME 612
           + K   A + + +I  L    ++ R K  +   +  +  +   D    +   LT  +   
Sbjct: 255 NAKAWNAFNLSCKI--L----LTTRFKQVTDFLSAATTTHISLD---HHSMTLTPDEVKS 305

Query: 613 DQVCSEIEVLKSRSTAAEARLAAAREQALSA---QEEVEEWKR-KYGVAVREAKAALEKA 668
             +  +    + +    E      R  ++ A   ++ +  W   K+ V   +    +E +
Sbjct: 306 --LLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKH-VNCDKLTTIIESS 362

Query: 669 AIVQERTSKEMQQR-ED--VLREEF---SSTLA-----EKEEEMKEKATKIEHAEQCLTT 717
             V E    E ++  +   V        +  L+       + ++     K+ H    +  
Sbjct: 363 LNVLE--PAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKL-HKYSLVEK 419

Query: 718 LRLELKVSFFDIY 730
              E  +S   IY
Sbjct: 420 QPKESTISIPSIY 432

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 67.2 bits (164), Expect = 2e-11
 Identities = 48/309 (15%), Positives = 115/309 (37%), Gaps = 18/309 (5%)

Query: 414  LQKFFRKAFEDHKKNVYMEADIRCSSAIQSMERKLRAACHSSDASIDNVVKVLDGLISEY 473
            L K  R+  E   K+   E   R     Q  E +L+          +    + + L +E 
Sbjct: 849  LLKVTRQEEEMQAKD---EELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAET 905

Query: 474  ETSCHGPGKWQKLATFLQQSSEGPILDLVKRLIDQIGSERSSLMLKYRSIEDNMKLLKKQ 533
            E          +LA   Q+  E  + ++  R+ ++       L  + + ++  M  L++Q
Sbjct: 906  ELYAEAEEMRVRLAAKKQEL-EEILHEMEARI-EEEEERSQQLQAEKKKMQQQMLDLEEQ 963

Query: 534  LEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNE 593
            LE+ E            A    +        +I  ++ + + + ++++ L+K    L+  
Sbjct: 964  LEEEEA-----------ARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEER 1012

Query: 594  ISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRK 653
            +SD      +   K K +     ++ E + S       +   +R++    + ++E     
Sbjct: 1013 VSDLTTNLAEEEEKAKNLTKLK-NKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSD 1071

Query: 654  YGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQ 713
                + E +A + +      +  +E+Q     L +E +S      ++++E  + I   ++
Sbjct: 1072 LHEQIAELQAQIAELKAQLAKKEEELQAALARLEDE-TSQKNNALKKIRELESHISDLQE 1130

Query: 714  CLTTLRLEL 722
             L + +   
Sbjct: 1131 DLESEKAAR 1139

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 66.8 bits (163), Expect = 2e-11
 Identities = 31/228 (13%), Positives = 83/228 (36%), Gaps = 11/228 (4%)

Query: 502  VKRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLE---DSERYKSEYLKRYDDAINDKKKL 558
             K    +  +E   L  K+  + +   LL+++L+   +      E   R      + +++
Sbjct: 869  TKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEI 928

Query: 559  ADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSE 618
              +  +RI   +  +  L+ +   + + +  L+ ++ + +        K +  +     +
Sbjct: 929  LHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAA----RQKLQLEKVTADGK 984

Query: 619  IEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKE 678
            I+ ++      E +     ++    +E V +          E    L K     E    E
Sbjct: 985  IKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNL-AEEEEKAKNLTKLKNKHESMISE 1043

Query: 679  MQ---QREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELK 723
            ++   ++E+  R+E      + E E  +   +I   +  +  L+ +L 
Sbjct: 1044 LEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLA 1091

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 50.6 bits (121), Expect = 2e-06
 Identities = 35/244 (14%), Positives = 80/244 (32%), Gaps = 30/244 (12%)

Query: 442  QSMERKLRAACHSSDASIDNVVKVLDGLISEYETSCHGPGKWQKLATFLQQSSE--GPIL 499
            ++  +KL+    ++D  I  +   +  +  +         K  K    L++        L
Sbjct: 968  EAARQKLQLEKVTADGKIKKMEDDILIMEDQNN-------KLTKERKLLEERVSDLTTNL 1020

Query: 500  DLVKRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLA 559
               +     +   ++        +E  +K  +K  ++ E+ K +               +
Sbjct: 1021 AEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGE-----------S 1069

Query: 560  DDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEI 619
             D   +I  LQ +   L+ + +   + + +    + D   + +  L K + +E    S I
Sbjct: 1070 SDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELE----SHI 1125

Query: 620  EVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEM 679
              L+    + +A    A +Q     EE+E  K +              A   + R S   
Sbjct: 1126 SDLQEDLESEKAARNKAEKQKRDLSEELEALKTEL------EDTLDTTATQQELRGSDYK 1179

Query: 680  QQRE 683
               +
Sbjct: 1180 DDDD 1183

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 54.0 bits (130), Expect = 2e-07
 Identities = 41/281 (14%), Positives = 100/281 (35%), Gaps = 37/281 (13%)

Query: 405  LARKKYEGL--------LQKFFRKAFEDHKKNVYMEADIRCSS-AIQSMERKLRAACHSS 455
             AR     L        +QKF R  +   K+       +R ++ A+Q++ R         
Sbjct: 805  QARCYATFLRRTRAAIIIQKFQR-MYVVRKR----YQCMRDATIALQALLRGYLVRNKYQ 859

Query: 456  DASIDNVVKVLDGLISEYETSCHGPGKWQKLATFLQQSSEGPI--------------LDL 501
                ++   ++   +  +    H   +  K   +LQ      +              ++ 
Sbjct: 860  MMLREHKSIIIQKHVRGWLARVHYH-RTLKAIVYLQCCYRRMMAKRELKKLKIEARSVER 918

Query: 502  VKRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADD 561
             K+L   + ++   L  K        K L +++ + E   S   ++    +   +   ++
Sbjct: 919  YKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEE 978

Query: 562  ---YTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSE 618
                T+R+ +LQ E   LR++         +++     +K + +Q++++ K     + +E
Sbjct: 979  AKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTE 1038

Query: 619  IEVLKSRSTAAEARLAAAREQALSAQE-----EVEEWKRKY 654
             E L  R       +    E+ L  +      ++ + + +Y
Sbjct: 1039 KEELNRRIHDQAKEITETMEKKLVEETKQLELDLNDERLRY 1079

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 46.3 bits (110), Expect = 3e-05
 Identities = 20/205 (9%), Positives = 61/205 (29%), Gaps = 9/205 (4%)

Query: 519  KYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLRE 578
            +Y+ + D    L+  L          +   +      +K    + +R++  +     +  
Sbjct: 834  RYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYL 893

Query: 579  KSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAARE 638
            +             ++    R  ++       +E+++      L+ +         +  E
Sbjct: 894  QCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKI----MQLQRKIDEQNKEYKSLLE 949

Query: 639  QALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKE 698
            +  + +        K    +R     L  +    +  +  +   ++ +  +    L + +
Sbjct: 950  KMNNLEITYSTETEK----LRSDVERLRMSEEEAKNATNRVLSLQEEI-AKLRKELHQTQ 1004

Query: 699  EEMKEKATKIEHAEQCLTTLRLELK 723
             E K      +  +     L  ELK
Sbjct: 1005 TEKKTIEEWADKYKHETEQLVSELK 1029

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 48.6 bits (115), Expect = 1e-06
 Identities = 16/118 (13%), Positives = 38/118 (32%), Gaps = 44/118 (37%)

Query: 587 VDSLKNE---ISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSA 643
            D L  E   I  W+ +                   + L+    A++      RE+A   
Sbjct: 77  ADRLTQEPESIRKWREEQR-----------------KRLQELDAASKVMEQEWREKA--- 116

Query: 644 QEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEM 701
           ++++EEW ++            E+     E+     +  +    + F     + + ++
Sbjct: 117 KKDLEEWNQRQS----------EQV----EKNKINNRIAD----KAF---YQQPDADI 153

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 40.5 bits (94), Expect = 6e-04
 Identities = 15/76 (19%), Positives = 27/76 (35%), Gaps = 17/76 (22%)

Query: 635 AAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTL 694
           A  ++     E + +W        RE     E+   +QE  +      ++  RE+    L
Sbjct: 75  AQADRLTQEPESIRKW--------RE-----EQRKRLQELDAASKVMEQE-WREKAKKDL 120

Query: 695 AE---KEEEMKEKATK 707
            E   ++ E  EK   
Sbjct: 121 EEWNQRQSEQVEKNKI 136

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 48.1 bits (114), Expect = 5e-06
 Identities = 31/227 (13%), Positives = 92/227 (40%), Gaps = 10/227 (4%)

Query: 499 LDLVKRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKL 558
           L   +  ++    + +       S+   ++L +++L+ ++   +  L++ ++A    +K 
Sbjct: 64  LKDAQEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEA----EKA 119

Query: 559 ADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSE 618
           AD+    +  ++       EK       +   K+   D  RKY++V  K   +E     +
Sbjct: 120 ADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIES----D 175

Query: 619 IEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKE 678
           +E  + R+  +E + A   E+  +    ++  + +     ++     E+  ++ ++  + 
Sbjct: 176 LERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEA 235

Query: 679 MQQREDVLRE--EFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELK 723
             + E   R   +   ++ + E+E+  +  K +   + L     ++ 
Sbjct: 236 ETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDMT 282

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 46.6 bits (110), Expect = 1e-05
 Identities = 36/233 (15%), Positives = 91/233 (39%), Gaps = 8/233 (3%)

Query: 499 LDLVKRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKL 558
           +D +K+ +  +  ++ + + +    E + K  + + +  E       K+     ++  K 
Sbjct: 1   MDAIKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKY 60

Query: 559 ---ADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAME--- 612
                D   ++   + +        +SL++ +   + E+   + +    L K +  E   
Sbjct: 61  SEALKDAQEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAA 120

Query: 613 DQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQ 672
           D+    ++V++SR+   E ++     Q   A+   E+  RKY    R+           +
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAE 180

Query: 673 ERTSKEMQQREDVLRE--EFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELK 723
           ER      +  ++  E    ++ L   E + ++ + K +  E+ +  L  +LK
Sbjct: 181 ERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLK 233

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 45.0 bits (106), Expect = 4e-05
 Identities = 39/234 (16%), Positives = 82/234 (35%), Gaps = 17/234 (7%)

Query: 506 IDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKL---ADDY 562
             Q+  E  SL  K ++ ED +    + L+D++       K+  DA  D   L      +
Sbjct: 36  SKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLF 95

Query: 563 TSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVC---SEI 619
              ++  Q    +  +K     K  D  +  +   + +  +   K +  E Q+       
Sbjct: 96  EEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIA 155

Query: 620 EVLKSRSTAAEARLAAAREQALSAQEEVEEWK----------RKYGVAVREAKAALEKAA 669
           E    +      +L         A+E  E  +          +     ++  +A  EK +
Sbjct: 156 EDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYS 215

Query: 670 IVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELK 723
             +++  +E++   D L+E   +     E  + +    I+  E  L   +L+ K
Sbjct: 216 QKEDKYEEEIKVLSDKLKEA-ETRAEFAERSVTKLEKSIDDLEDELYAQKLKYK 268

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245

 Score = 48.0 bits (114), Expect = 1e-05
 Identities = 26/196 (13%), Positives = 56/196 (28%), Gaps = 12/196 (6%)

Query: 535  EDSERYKSEYL-------KRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTV 587
            E + R             + Y D IN    L ++   ++   Q       +K       V
Sbjct: 1877 EANIRLLKRQGRQNYVTPRHYLDFINQVVLLINEKRDQLEEEQLHLNIGLKKLRDTEAQV 1936

Query: 588  DSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEV 647
              L+  ++   R+ D    +      Q+  + +  + +   A         +      + 
Sbjct: 1937 KDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDARELQVQLDVRNKEIAVQK 1996

Query: 648  EEWKRKYGVAV-----REAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMK 702
             +       A      RE    LE AA   +    E+      L +  ++   E    ++
Sbjct: 1997 VKAYADLEKAEPTGPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIR 2056

Query: 703  EKATKIEHAEQCLTTL 718
            E       + +    +
Sbjct: 2057 ETEQIKTESSKVKNKV 2072

>4akv_A Sorting nexin-33; transport protein, organelle biogenesis; 2.65A {Homo sapiens} Length = 386

 Score = 44.8 bits (105), Expect = 7e-05
 Identities = 29/250 (11%), Positives = 79/250 (31%), Gaps = 21/250 (8%)

Query: 482 KWQKLATFLQQSSEGPILDLVKRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYK 541
           +++    FL    +     + KR  ++     +S +L ++   ++  L  + +ED     
Sbjct: 137 QYEGFQHFLSCLDD-KQWKMGKRRAEKDEMVGASFLLTFQIPTEHQDL--QDVEDRVDTF 193

Query: 542 SEYLKRYDDAINDKKKLADDYTSR------------INNLQGENISLREKSSSLSKTVDS 589
             + K+ DD++     +A +   +             +  Q  + S +      S+ ++S
Sbjct: 194 KAFSKKMDDSVLQLSTVASELVRKHVGGFRKEFQKLGSAFQAISHSFQMDPPFCSEALNS 253

Query: 590 LKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEE 649
             +          ++  +Q   +     +   L     +    +   ++ A +  +E + 
Sbjct: 254 AISHTGRTYEAIGEMFAEQPKNDLFQMLDTLSLYQGLLSNFPDIIHLQKGAFAKVKESQR 313

Query: 650 WKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIE 709
              +  +   EA     +  +V      EM         +F   +     +       I 
Sbjct: 314 MSDEGRMVQDEADGIRRRCRVVGFALQAEMNHFHQRRELDFKHMMQNYLRQQ------IL 367

Query: 710 HAEQCLTTLR 719
             ++    L 
Sbjct: 368 FYQRVGQQLE 377

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	736
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	100.0
4ido_A	457	Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE	100.0
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	100.0
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	98.98
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	98.55
2v66_B	111	Nuclear distribution protein NUDE-like 1; structur	98.52
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	98.47
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	98.41
3swk_A	86	Vimentin; cytoskeleton, intermediate filament, alp	98.25
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	97.77
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	97.76
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	97.71
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	97.68
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	97.68
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	97.68
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	97.61
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	97.6
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	97.46
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	97.44
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	97.43
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	97.41
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	97.4
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	97.37
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	97.32
3trt_A	77	Vimentin; cytoskeleton, intermediate filament, alp	97.31
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	97.31
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	97.23
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	97.19
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	97.18
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	97.1
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	97.08
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	97.05
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	97.05
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	97.04
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	97.04
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	97.03
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	97.03
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	97.01
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	97.0
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	96.98
3tnu_B	129	Keratin, type II cytoskeletal 5; coiled-coil, stru	96.96
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	96.95
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	96.95
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	96.95
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	96.95
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	96.95
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	96.94
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	96.94
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	96.93
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	96.93
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	96.93
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	96.92
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	96.92
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	96.92
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	96.9
3tnu_A	131	Keratin, type I cytoskeletal 14; coiled-coil, stru	96.9
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	96.89
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	96.88
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	96.87
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	96.86
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	96.85
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	96.83
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	96.82
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	96.82
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	96.8
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	96.79
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	96.77
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	96.75
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	96.75
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	96.74
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	96.74
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	96.74
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	96.72
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	96.71
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	96.71
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	96.7
1wxq_A	397	GTP-binding protein; structural genomics, riken st	96.7
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	96.69
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	96.69
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	96.69
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	96.69
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	96.67
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	96.66
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	96.66
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	96.66
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	96.66
2wji_A	165	Ferrous iron transport protein B homolog; membrane	96.64
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	96.64
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	96.64
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	96.63
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	96.63
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	96.62
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	96.62
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	96.61
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	96.6
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	96.59
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	96.57
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	96.56
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	96.52
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	96.52
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	96.52
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	96.51
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	96.5
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	96.49
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	96.48
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	96.47
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	96.47
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	96.46
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	96.46
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	96.46
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	96.46
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	96.46
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	96.43
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	96.43
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	96.4
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	96.4
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	96.39
3llu_A	196	RAS-related GTP-binding protein C; structural geno	96.39
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	96.37
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	96.36
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	96.35
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	96.35
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	96.34
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	96.34
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	96.34
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	96.33
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	96.33
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	96.31
2ged_A	193	SR-beta, signal recognition particle receptor beta	96.31
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	96.31
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	96.3
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	96.29
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	96.28
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	96.28
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	96.28
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	96.28
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	96.27
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	96.27
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	96.26
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	96.26
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	96.25
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	96.23
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	96.22
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	96.21
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	96.21
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	96.2
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	96.2
3swk_A	86	Vimentin; cytoskeleton, intermediate filament, alp	96.18
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	96.17
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	96.15
1nrj_B	218	SR-beta, signal recognition particle receptor beta	96.14
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	96.14
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	96.14
3ghg_A	562	Fibrinogen alpha chain; triple-stranded coiled coi	96.13
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	96.12
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	96.11
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	96.08
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	96.08
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	96.07
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	96.04
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	96.01
2fh5_B	214	SR-beta, signal recognition particle receptor beta	96.0
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	95.99
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	95.98
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	95.98
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	95.97
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	95.97
3s84_A	273	Apolipoprotein A-IV; four helix bundle, transport	95.96
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	95.95
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	95.93
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	95.88
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	95.86
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	95.86
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	95.86
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	95.85
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	95.83
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	95.82
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	95.82
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	95.76
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	95.75
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	95.75
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	95.53
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	95.53
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	95.48
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	95.45
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	95.39
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	95.38
2ocy_A	154	RAB guanine nucleotide exchange factor SEC2; RAB,	95.34
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	95.31
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	95.28
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	95.28
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	95.17
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	95.16
2ocy_A	154	RAB guanine nucleotide exchange factor SEC2; RAB,	95.13
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	95.1
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	95.09
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	95.07
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	95.06
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	94.93
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	94.92
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	94.9
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	94.83
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	94.82
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	94.79
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	93.8
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	94.76
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	94.73
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	94.72
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	94.7
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	94.7
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	94.68
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	94.65
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	94.6
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	94.54
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	94.49
2b9c_A	147	Striated-muscle alpha tropomyosin; alpha-helix, co	94.46
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	94.39
3tnu_B	129	Keratin, type II cytoskeletal 5; coiled-coil, stru	94.37
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	94.37
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	94.3
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	94.25
2b9c_A	147	Striated-muscle alpha tropomyosin; alpha-helix, co	94.16
1wb1_A	482	Translation elongation factor SELB; selenocysteine	94.16
3ghg_A	562	Fibrinogen alpha chain; triple-stranded coiled coi	94.15
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	94.15
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	94.12
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	94.12
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	94.07
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	94.04
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	94.01
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	94.0
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	94.0
3tnu_A	131	Keratin, type I cytoskeletal 14; coiled-coil, stru	93.96
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	93.91
3s84_A	273	Apolipoprotein A-IV; four helix bundle, transport	93.89
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	93.89
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	93.82
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	93.82
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	93.77
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	93.66
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	93.65
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	93.64
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	93.63
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	93.53
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	93.47
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	93.44
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	93.42
1g6h_A	257	High-affinity branched-chain amino acid transport	93.42
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	93.38
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	93.34
1sgw_A	214	Putative ABC transporter; structural genomics, P p	93.31
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	93.3
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	93.29
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	93.28
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	93.27
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	93.26
1b0u_A	262	Histidine permease; ABC transporter, transport pro	93.26
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	93.25
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	93.24
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	93.23
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	93.22
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	93.16
1ji0_A	240	ABC transporter; ATP binding protein, structural g	93.16
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	93.15
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	93.13
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	93.1
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	93.04
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	92.99
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	92.98
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	92.93
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	92.89
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	92.87
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	92.85
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	92.79
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	92.79
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	92.77
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	92.76
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	92.75
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	92.7
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	92.7
2ghi_A	260	Transport protein; multidrug resistance protein, M	92.67
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	92.65
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	92.61
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	92.54
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	92.42
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	92.29
2eyu_A	261	Twitching motility protein PILT; pilus retraction	92.22
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	92.18
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	92.1
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	92.09
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	92.05
2v66_B	111	Nuclear distribution protein NUDE-like 1; structur	92.02
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	91.96
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	91.91
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	91.88
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	91.88
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	91.87
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	91.83
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	91.81
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	91.72
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	91.67
3s4r_A	93	Vimentin; alpha-helix, cytoskeleton, intermediate	91.67
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	91.66
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	91.66
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	91.65
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	91.63
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	91.49
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	91.45
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	91.43
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	91.37
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	91.34
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	91.19
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	91.18
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	91.18
1p9r_A	418	General secretion pathway protein E; bacterial typ	91.1
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	91.08
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	91.04
4a74_A	231	DNA repair and recombination protein RADA; hydrola	90.99
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	90.98
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	90.97
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	90.97
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	90.93
2xxa_A	433	Signal recognition particle protein; protein trans	90.93
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	90.88
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	90.87
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	90.86
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	90.84
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	90.8
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	90.69
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	90.61
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	90.6
2eqb_B	97	RAB guanine nucleotide exchange factor SEC2; coile	90.55
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	90.54
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	90.39
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	90.39
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	90.31
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	90.22
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	90.21
2e7s_A	135	RAB guanine nucleotide exchange factor SEC2; coile	90.02
2e7s_A	135	RAB guanine nucleotide exchange factor SEC2; coile	90.02
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	89.88
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	89.87
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	89.68
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	89.67
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	89.67
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	89.59
3mq9_A	471	Bone marrow stromal antigen 2 fused to maltose-BI	89.55
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	89.34
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	89.29
2ewv_A	372	Twitching motility protein PILT; pilus retraction	89.16
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	89.1
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	89.08
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	89.08
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	89.07
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	89.05
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	89.02
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	89.01
3mq9_A	471	Bone marrow stromal antigen 2 fused to maltose-BI	89.01
3i00_A	120	HIP-I, huntingtin-interacting protein 1; transcrip	89.0
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	88.96
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	88.9
3s4r_A	93	Vimentin; alpha-helix, cytoskeleton, intermediate	88.89
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	88.83
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	88.81
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	88.69
3iox_A	497	AGI/II, PA; alpha helix, PPII helix, supersandwich	88.41
1ic2_A	81	Tropomyosin alpha chain, skeletal muscle; alpha-he	88.32
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	88.11
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	88.05
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	88.04
1ic2_A	81	Tropomyosin alpha chain, skeletal muscle; alpha-he	87.89
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	87.64
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	87.42
2a01_A	243	Apolipoprotein A-I; four-helix bundle, lipid trans	87.36
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	87.35
3haj_A	486	Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR,	87.26
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	87.1
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	87.0
2og2_A	359	Putative signal recognition particle receptor; nuc	86.99
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	86.95
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	86.95
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	86.93
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	86.81
2zqm_A	117	Prefoldin beta subunit 1; chaperone; HET: CIT; 1.9	86.69
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	86.44
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	86.44
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	86.4
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	86.35
2hf9_A	226	Probable hydrogenase nickel incorporation protein	86.24
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	86.17
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	86.09
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	86.09
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	86.08
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	86.04
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	86.0
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	85.83
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	85.77
3i00_A	120	HIP-I, huntingtin-interacting protein 1; transcrip	85.67
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	85.65
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	85.58
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	85.55
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	85.51
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	85.39
1l8d_A	112	DNA double-strand break repair RAD50 ATPase; zinc	85.18
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	85.13
3r6n_A	450	Desmoplakin; spectrin repeat, SH3 domain, cell adh	84.92
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	84.76
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	84.74
1x8y_A	86	Lamin A/C; structural protein, intermediate filame	84.67
3qh9_A	81	Liprin-beta-2; coiled-coil, dimerization, structur	84.67
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	84.63
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	84.61
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	84.4
4fla_A	152	Regulation of nuclear PRE-mRNA domain-containing 1	84.3
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	84.29
1fxk_A	107	Prefoldin; archaeal protein, chaperone; 2.30A {Met	84.28
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	84.27
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	84.17
2cvh_A	220	DNA repair and recombination protein RADB; filamen	84.1
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	84.04
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	83.96
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	83.96
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	83.89
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	83.87
3trt_A	77	Vimentin; cytoskeleton, intermediate filament, alp	83.76
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	83.75
3kta_A	182	Chromosome segregation protein SMC; structural mai	83.72
1gk4_A	84	Vimentin; intermediate filament, dimer, parallel c	83.6
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	83.56
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	83.52
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	83.36
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	83.34
2l7b_A	307	Apolipoprotein E, APO-E; lipid transport, atherosc	83.0
4gkw_A	167	Spindle assembly abnormal protein 6; double helix,	82.99
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	82.98
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	82.97
3cvf_A	79	Homer-3, homer protein homolog 3; coiled coil, alt	82.97
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	82.91
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	82.69
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	82.65
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	82.59
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	82.49
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	82.37
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	82.34
1via_A	175	Shikimate kinase; structural genomics, transferase	82.34
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	82.3
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	82.22
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	82.17
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	82.15
3bos_A	242	Putative DNA replication factor; P-loop containing	82.09
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	82.07
1m1j_B	464	Fibrinogen beta chain; coiled coils, disulfide rin	82.04
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	81.73
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	81.73
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	81.65
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	81.5
3a7p_A	152	Autophagy protein 16; coiled-coil, coiled coil, cy	81.44
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	81.41
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	81.28
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	81.19
3qh9_A	81	Liprin-beta-2; coiled-coil, dimerization, structur	81.0
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	80.9
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	80.74
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	80.68
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	80.65
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	80.57
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	80.54
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	80.49
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	80.45
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	80.41
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	80.31

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=100.00  E-value=1.5e-90  Score=796.25  Aligned_cols=515  Identities=28%  Similarity=0.491  Sum_probs=476.1

Q ss_pred             CCCCCeeEEEeCCCCceeeCHHHHHHhhccCCCEEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccc
Q 004698           38 GPARPIRLVYCDEKGKFRMDPEAVAALQLVKEPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAP  117 (736)
Q Consensus        38 ~~~~pi~Lv~~d~~~~l~l~~eAl~~L~~i~~~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p  117 (736)
                      ..+.|||||.++ +|.|.+|++|+++|..++.|+.+|+|+|++++|||||+|.|+|...||.+++++.+||+|||+|+.|
T Consensus         6 ~m~~pv~li~~~-~~~l~~~~eal~~L~~i~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~   84 (592)
T 1f5n_A            6 HMTGPMCLIENT-NGRLMANPEALKILSAITQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVP   84 (592)
T ss_dssp             -CCSCEEEEEEE-TTEEEECHHHHHHHHTCCSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEE
T ss_pred             CCCCCeEEEEeC-CCcEEECHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecc
Confidence            356799999987 7999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             cccccCCCCceEEEEeecCCCcccCC-CCccchHHHHHhhhccceEEEccCCCCchHHhhhhHHHHHHHHHHHHHhcC--
Q 004698          118 LKRTALDGTEYNLLLLDSEGIDAYDQ-TGTYSTQIFSLAVLLSSMFIYNQMGGIDESAIDRLSLVTQMTKHIRIRASG--  194 (736)
Q Consensus       118 ~~~~~~~g~~~~v~llDteG~~~~~~-~~~~d~~IFaLa~LLSS~~IyN~~g~i~e~~l~~L~~v~el~~~i~~k~~~--  194 (736)
                      ++.    +.+..++|+||||+++... +..+|+++|+|+++|||++|||+.|.|++++++.|++++++++.++.++++  
T Consensus        85 ~~~----~~~~~i~LiDTpGi~~~~~~~~~~~~~~fala~llss~lv~n~~~~i~~~dl~~l~~v~e~~~~l~~k~~~~~  160 (592)
T 1f5n_A           85 HPK----KPGHILVLLDTEGLGDVEKGDNQNDSWIFALAVLLSSTFVYNSIGTINQQAMDQLYYVTELTHRIRSKSSPDE  160 (592)
T ss_dssp             CSS----STTCEEEEEEECCBCCGGGCCCTTHHHHHHHHHHHCSEEEEEEESCSSHHHHHTTHHHHTHHHHCBSCCC---
T ss_pred             ccc----CCCceEEEecCCCcCcccccchhHHHHHHHHHHHhcCeEEEECCCCccHHHHHHHHHHHHHhhhhhcccCccc
Confidence            854    2346799999999988776 567899999999999999999999999999999999999999999887652  


Q ss_pred             ---CCCCCCcccccCCeEEEEeecccccccccCccCChHHHHHHhhccccCCChhhhhhhHHHHHHHhhCCCCceEeccC
Q 004698          195 ---GKTTPSELGQFSPIFVWLLRDFYLDLVEDNRKITPRDYLEIALRPVQGSGRDIAAKNEIRDSIRALFPDRECFTLVR  271 (736)
Q Consensus       195 ---~~~~~~e~~~~~P~f~wlvRDf~l~~~~~g~~~t~~~yLe~~L~~~~g~~~~~~~~n~ir~~i~~~F~~~~cf~l~~  271 (736)
                         +..+..+++.|||+|+||||||++++..+|+++|+++||+++|+..+|.++.+...|.+|.+|++|||+++||+|||
T Consensus       161 ~~~~~~~~~~~~~~fP~~~wvvRD~~l~~~~~g~~~t~~eyLe~~L~~~~~~~~~~~~~n~~R~~I~~~F~~~~cf~lp~  240 (592)
T 1f5n_A          161 NENEVEDSADFVSFFPDFVWTLRDFSLDLEADGQPLTPDEYLTYSLKLKKGTSQKDETFNLPRLCIRKFFPKKKCFVFDR  240 (592)
T ss_dssp             ----CCGGGGHHHHCCEEEEEEETCCCCCCCSSSCCCHHHHHHHHTCCCCCCSHHHHHHHHHHHHHHHHCSCEEEEECCC
T ss_pred             ccccccchhhhhccCCceEEEEecccchhccCCCCCCHHHHHHHHHhhccCCChhhHhhhhHHHHHHHhCCCCcEEEeCC
Confidence               22234567889999999999999999889999999999999999999988889999999999999999999999999


Q ss_pred             CCcChhhhhcccCCCcCCCChHHHHHHHHHHHHHhccCCcccc-CCcccchhhHHHHHHHHHHHHhcCCCCCccchHHHH
Q 004698          272 PLSNENELQRLDQISLDRLRPEFRAGLDALTKFVFERTRPKQV-GATVLTGPVLIGITESYLDAINNGAVPTISSSWQSV  350 (736)
Q Consensus       272 P~~~~~~l~~l~~~~~~~l~~eF~~~l~~l~~~i~~~~~pK~~-~g~~ltg~~l~~l~~~yv~ain~g~vP~i~s~~~~~  350 (736)
                      |+.+. .+++++.++.++|+|+|+++++.||++|++.++||++ +|.++||++|+.|++.||+|||+|.+|+++|+|.++
T Consensus       241 P~~~~-~l~~L~~~~~~~L~peF~~~l~~l~~~i~~~~~~K~~~gg~~vtG~~L~~l~~~yv~ain~g~vP~~~s~~~a~  319 (592)
T 1f5n_A          241 PVHRR-KLAQLEKLQDEELDPEFVQQVADFCSYIFSNSKTKTLSGGIQVNGPRLESLVLTYVNAISSGDLPCMENAVLAL  319 (592)
T ss_dssp             CSCGG-GGGGGGGSCGGGSCHHHHHHHHHHHHHHHHHCCCCEETTTEECBHHHHHHHHHHHHHHHHHTSCCBHHHHHHHH
T ss_pred             CCcHH-HHhhhccCChhhCCHHHHHHHHHHHHHHHccccceeecCCccccHHHHHHHHHHHHHHHhCCCCCCcchHHHHH
Confidence            99988 8999999999999999999999999999999999999 578999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhcccC--CCCCh-HHHHHHHHHHHHHHHHHhhhcccCChhhhHHHHHHHHHHHHHHHHHHHH
Q 004698          351 EEAECRRAYDSATETYMSTFDRS--KPPEE-VALGEAHEAAVQKALAVYNAGAVGVGLARKKYEGLLQKFFRKAFEDHKK  427 (736)
Q Consensus       351 ~e~~~~~a~~~A~~~Y~~~m~~~--~p~~e-~~L~~~h~~~~~~Al~~F~~~s~g~~~~~~~~~~~L~~~i~~~~e~~~~  427 (736)
                      ++.+|.+|++.|+++|.+.|...  +|.+. ++|...|..+..+|+++|++.+|+  +..++|+++|...|.+.+++|++
T Consensus       320 a~~e~~~av~~A~~~Y~~~M~~~~~~P~~~~~eL~~~H~~~~~~Al~~F~~~~~~--d~~~~~~~~L~~~i~~~~~~~~~  397 (592)
T 1f5n_A          320 AQIENSAAVQKAIAHYEQQMGQKVQLPTESLQELLDLHRDSEREAIEVFIRSSFK--DVDHLFQKELAAQLEKKRDDFCK  397 (592)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCCSSCSSHHHHHHHHHHHHHHHHHHHHHHCCC--CGGGHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHhcch--hhHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999863  46655 899999999999999999999987  56789999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHH----HHHHHHhhccCCCcchhHHHHHHHHHHHHHhccc-CCCchhHHHHHHHH--HhhhhhHHH
Q 004698          428 NVYMEADIRCSSAIQS----MERKLRAACHSSDASIDNVVKVLDGLISEYETSC-HGPGKWQKLATFLQ--QSSEGPILD  500 (736)
Q Consensus       428 ~n~~~s~~~C~~~l~~----le~~l~~~~~~~~~~~~~~~~~~~~ll~~Y~~~~-~Gp~K~~~L~~fLq--~~~~~~il~  500 (736)
                      .|+.+|..+|+++|+.    |+++|+++.+..+|+|+.|.+.++.+..+|+..+ +||.++.+|++||+  ....++|++
T Consensus       398 ~N~~~s~~~C~~ll~~l~~~l~~~i~~g~~~~p~g~~~~~~~~~~~~~~Y~~~~~kg~~~~~vl~~fl~~~~~~~~~ilq  477 (592)
T 1f5n_A          398 QNQEASSDRCSGLLQVIFSPLEEEVKAGIYSKPGGYRLFVQKLQDLKKKYYEEPRKGIQAEEILQTYLKSKESMTDAILQ  477 (592)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSTTHHHHHHHHHHHHHHHHHHSSCCCTTHHHHHHHHHHHTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCCCcHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999986    5666667788888899999999999999999999 89999999999998  467899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698          501 LVKRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADD  561 (736)
Q Consensus       501 ~~~~l~~~i~~e~~~L~~k~es~e~e~~~lk~~Le~~e~~~~e~~k~~e~~In~lkk~~e~  561 (736)
                      +|+.|+++ ++++.+.+++.++++.+...+.+.+...++.+++.+++|+++|.+++.+|+.
T Consensus       478 ~d~~l~~~-~k~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~ql~~kme~  537 (592)
T 1f5n_A          478 TDQTLTEK-EKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMEN  537 (592)
T ss_dssp             HCSSSCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999 9999999999999999999999999999999999999999999999766554

>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*

Probab=100.00  E-value=4.2e-87  Score=739.91  Aligned_cols=382  Identities=21%  Similarity=0.307  Sum_probs=348.9

Q ss_pred             CCCCCCeeEEEeCCCCceeeCHHHHH-Hhhc---cCCCEEEEEeeCCCCCChhHHHHHHh-------CC---------CC
Q 004698           37 TGPARPIRLVYCDEKGKFRMDPEAVA-ALQL---VKEPIGVVSVCGRARQGKSFILNQLL-------GR---------SS   96 (736)
Q Consensus        37 ~~~~~pi~Lv~~d~~~~l~l~~eAl~-~L~~---i~~~v~vVsv~G~~rtGKS~LlN~l~-------~~---------~~   96 (736)
                      +.+++|||||+++++|+|.||++|++ +|..   +++||+||||+|++|||||||||+|+       |.         ..
T Consensus        29 ~~~~~pvqlV~~~~~~~l~ln~eAl~~iL~~~~i~~~~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~  108 (457)
T 4ido_A           29 VKKAGPVQVLIVKDDHSFELDETALNRILLSEAVRDKEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLT  108 (457)
T ss_dssp             --CCCEEEEEEECTTSCEEECHHHHHHHHSSTTTTTSBEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCC
T ss_pred             cCCCCceeEEEECCCCCEEECHHHHHHHHhccccCCCceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCC
Confidence            57899999999988899999999999 5654   47899999999999999999999776       22         57


Q ss_pred             cccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcccCCCCccchHHHHHhhhccceEEEccCCCCchHHhh
Q 004698           97 GFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYDQTGTYSTQIFSLAVLLSSMFIYNQMGGIDESAID  176 (736)
Q Consensus        97 gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~~~~~~~d~~IFaLa~LLSS~~IyN~~g~i~e~~l~  176 (736)
                      ||+||++++|||+|||||+.|+....|+|++++||||||||+++.+.+.++|++||+|++||||++|||++|+|++++|+
T Consensus       109 gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vlllDTEG~~d~~~~~~~d~~ifaLa~LLSS~~IyN~~~~i~~~~L~  188 (457)
T 4ido_A          109 GFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMDTQGTFDSQSTLRDSATVFALSTMISSIQVYNLSQNVQEDDLQ  188 (457)
T ss_dssp             SSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEEEEECCBTCTTCCHHHHHHHHHHHHHHCSEEEEEEESSCCHHHHH
T ss_pred             CceeCCCCCCcCceEEEecCcccccCCCCCeeEEEEEeccCCCCcccCccccHHHHHHHHHHhhheeecccccCCHHHHH
Confidence            99999999999999999999998888899999999999999999988888999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHhcCCCCCCCcccccCCeEEEEeecccccccccCccCChHHHHHHhhccccCCChhhhhhhHHHHH
Q 004698          177 RLSLVTQMTKHIRIRASGGKTTPSELGQFSPIFVWLLRDFYLDLVEDNRKITPRDYLEIALRPVQGSGRDIAAKNEIRDS  256 (736)
Q Consensus       177 ~L~~v~el~~~i~~k~~~~~~~~~e~~~~~P~f~wlvRDf~l~~~~~g~~~t~~~yLe~~L~~~~g~~~~~~~~n~ir~~  256 (736)
                      +|++|+++++.|..         ..+..|||+|+||||||+++++.+|..+|+++||+++|+..+|..   .+.|.+|++
T Consensus       189 ~L~~~tel~~~i~~---------~~~~~~Fp~f~wlvRDf~l~l~~~~g~~t~~eyLe~~L~~~~g~~---~~~~~iR~~  256 (457)
T 4ido_A          189 HLQLFTEYGRLAME---------ETFLKPFQSLIFLVRDWSFPYEFSYGADGGAKFLEKRLKVSGNQH---EELQNVRKH  256 (457)
T ss_dssp             HHHHHHHHHHHHSC---------CCSSCSEEEEEEEEETCCCTTTSCSBHHHHHHHHHHHHCCCTTSC---HHHHHHHHH
T ss_pred             HHHHHHHHHHHHhh---------hcccccCCceEEEEecCCccccccCCCCCHHHHHHHHhccCCCCC---HHHHHHHHH
Confidence            99999999998741         235678999999999999999888889999999999999887643   467889999


Q ss_pred             HHhhCCCCceEeccCCCcChhhhhcccCCCcCCCChHHHHHHHHHHHHHhcc--CCccccCCcccchhhHHHHHHHHHHH
Q 004698          257 IRALFPDRECFTLVRPLSNENELQRLDQISLDRLRPEFRAGLDALTKFVFER--TRPKQVGATVLTGPVLIGITESYLDA  334 (736)
Q Consensus       257 i~~~F~~~~cf~l~~P~~~~~~l~~l~~~~~~~l~~eF~~~l~~l~~~i~~~--~~pK~~~g~~ltg~~l~~l~~~yv~a  334 (736)
                      |++|||+++||+||||+.++..+++++ .+.++|+|+|+++++.||++|++.  ++||+++|.+|||++|+.|++.||+|
T Consensus       257 I~~~F~~~~Cf~lp~P~~~~~~~~~~~-~~l~dL~peF~~ql~~l~~~I~~~~~l~~K~i~G~~vtg~~L~~lv~~Yv~a  335 (457)
T 4ido_A          257 IHSCFTNISCFLLPHPGLKVATNPNFD-GKLKEIDDEFIKNLKILIPWLLSPESLDIKEINGNKITCRGLVEYFKAYIKI  335 (457)
T ss_dssp             HHHHEEEEEEEECCCCCHHHHHCTTCC-CCGGGSCHHHHHHHHHHHHHHHSTTTCCCCEETTEECBHHHHHHHHHHHHHH
T ss_pred             HHHhCCCCcEEEcCCCchhhhhchhhh-cChhhCCHHHHHHHHHHHHHHhccccccccccCCEeecHHHHHHHHHHHHHH
Confidence            999999999999999998776666665 367899999999999999999974  56999999999999999999999999


Q ss_pred             HhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHhhcccC----CC-CChHHHHHHHHHHHHHHHHHhhhcc-cCChhhhH
Q 004698          335 INNGAVPTISSSWQSVEEAECRRAYDSATETYMSTFDRS----KP-PEEVALGEAHEAAVQKALAVYNAGA-VGVGLARK  408 (736)
Q Consensus       335 in~g~vP~i~s~~~~~~e~~~~~a~~~A~~~Y~~~m~~~----~p-~~e~~L~~~h~~~~~~Al~~F~~~s-~g~~~~~~  408 (736)
                      ||+|.+|+++|+|.++++++|.+|+++|+++|.+.|.+.    +| .++++|++.|..|+++|+++|++.+ +|+.+..+
T Consensus       336 in~g~vP~~esa~~a~ae~en~~Av~~A~~~Y~~~M~~~~~~~~P~~~~~eL~~~H~~~~~~Al~~F~~~~~~g~~d~~~  415 (457)
T 4ido_A          336 YQGEELPHPKSMLQATAEANNLAAVATAKDTYNKKMEEICGGDKPFLAPNDLQTKHLQLKEESVKLFRGVKKMGGEEFSR  415 (457)
T ss_dssp             HHSSSSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTSCCCCHHHHHHHHHHHHHHHHHHHHHSCCTTHHHHHH
T ss_pred             hcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcccccHHHHH
Confidence            999999999999999999999999999999999999874    35 4679999999999999999999886 78888999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 004698          409 KYEGLLQKFFRKAFEDHKKNVYM  431 (736)
Q Consensus       409 ~~~~~L~~~i~~~~e~~~~~n~~  431 (736)
                      +|+++|...|++++++|++.|+.
T Consensus       416 ~~~~~L~~~l~~~~~~~~~~Ne~  438 (457)
T 4ido_A          416 RYLQQLESEIDELYIQYIKHNDS  438 (457)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcc
Confidence            99999999999999999999965

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=100.00  E-value=2.4e-78  Score=674.78  Aligned_cols=383  Identities=21%  Similarity=0.305  Sum_probs=346.0

Q ss_pred             CCCCCCeeEEEeCCCCceeeCHHHHH-Hhhc---cCCCEEEEEeeCCCCCChhHHHHHHhCC----------------CC
Q 004698           37 TGPARPIRLVYCDEKGKFRMDPEAVA-ALQL---VKEPIGVVSVCGRARQGKSFILNQLLGR----------------SS   96 (736)
Q Consensus        37 ~~~~~pi~Lv~~d~~~~l~l~~eAl~-~L~~---i~~~v~vVsv~G~~rtGKS~LlN~l~~~----------------~~   96 (736)
                      ...++|||||.++++|+|.||++|++ +|..   ++.||+||||+|++|+|||||||+|+|.                .+
T Consensus        29 ~~~~~piqlv~~~~~~~l~v~~eal~~iL~~~~~~~~~v~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~  108 (447)
T 3q5d_A           29 VKKAGPVQVLIVKDDHSFELDETALNRILLSEAVRDKEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLT  108 (447)
T ss_dssp             CCCCCEEEEEEECTTSCEEECHHHHHHHHCCTTTTTSBEEEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCC
T ss_pred             ccCCCceeEEEECCCCCEEECHHHHHHHHhccccCCCceEEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccc
Confidence            47889999999998899999999996 7765   5789999999999999999999999973                57


Q ss_pred             cccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcccCCCCccchHHHHHhhhccceEEEccCCCCchHHhh
Q 004698           97 GFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYDQTGTYSTQIFSLAVLLSSMFIYNQMGGIDESAID  176 (736)
Q Consensus        97 gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~~~~~~~d~~IFaLa~LLSS~~IyN~~g~i~e~~l~  176 (736)
                      ||+|++|+++||+|||||+.|+....|+|+++.||||||||+++.+++.++|++||+|++||||++|||++|.|++++++
T Consensus       109 ~f~~~~t~~~~T~GIw~~~~p~~~~~~~~~~~~vvllDTeG~~~~~~~~~~d~~ifal~~lLSs~~IyN~~~~i~~~~l~  188 (447)
T 3q5d_A          109 GFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMDTQGTFDSQSTLRDSATVFALSTMISSIQVYNLSQNVQEDDLQ  188 (447)
T ss_dssp             SSCSCCSSCCCCCEEEEESSCEEEECSSSCEEEEEEEEEECCCSSHHHHHHHHHHHHHHHHHCSEEEEEESSSCCHHHHH
T ss_pred             eecCCCCCCCceeEEEEecCccccccCCCCcceEEEEcCCcccccccchhhhHHHHHHHHHHhhHHHHhhcccccHHHHH
Confidence            99999999999999999999998888899999999999999998888888999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHhcCCCCCCCcccccCCeEEEEeecccccccccCccCChHHHHHHhhccccCCChhhhhhhHHHHH
Q 004698          177 RLSLVTQMTKHIRIRASGGKTTPSELGQFSPIFVWLLRDFYLDLVEDNRKITPRDYLEIALRPVQGSGRDIAAKNEIRDS  256 (736)
Q Consensus       177 ~L~~v~el~~~i~~k~~~~~~~~~e~~~~~P~f~wlvRDf~l~~~~~g~~~t~~~yLe~~L~~~~g~~~~~~~~n~ir~~  256 (736)
                      +|++|+++++++..         .....+||+|+||||||++++..+|+.+||++||+++|+..++.   ..+.|.+|++
T Consensus       189 ~L~~~~e~~~~~~~---------~~~~~~fp~l~wvvRD~~~~l~~~~g~~t~~eyLe~~L~~~~~~---~~~~~~~r~~  256 (447)
T 3q5d_A          189 HLQLFTEYGRLAME---------ETFLKPFQSLIFLVRDWSFPYEFSYGADGGAKFLEKRLKVSGNQ---HEELQNVRKH  256 (447)
T ss_dssp             HHHHHHHHHHHTSC---------CCSSCSEEEEEEEEEEECCTTTSCSBHHHHHHHHHHHHHSSTTC---SSSSCCHHHH
T ss_pred             HHHHHHHHHHHHHH---------hhcccCCCceEEEEeeccccccccCCCCCHHHHHHHHHhhccCc---cHHHHHHHHH
Confidence            99999999987531         12346789999999999999888777789999999999877543   4456789999


Q ss_pred             HHhhCCCCceEeccCCCcChhhhhcccCCCcCCCChHHHHHHHHHHHHHhc--cCCccccCCcccchhhHHHHHHHHHHH
Q 004698          257 IRALFPDRECFTLVRPLSNENELQRLDQISLDRLRPEFRAGLDALTKFVFE--RTRPKQVGATVLTGPVLIGITESYLDA  334 (736)
Q Consensus       257 i~~~F~~~~cf~l~~P~~~~~~l~~l~~~~~~~l~~eF~~~l~~l~~~i~~--~~~pK~~~g~~ltg~~l~~l~~~yv~a  334 (736)
                      |++|||+++||+||||+.+......++ .++++|+|+|+++++.||++|+.  .++||.++|.+|||++|+.|++.||++
T Consensus       257 i~~~F~~~~cf~lp~P~~~v~~~~~~~-~~l~~L~~~F~~~l~~l~~~i~~~~~~~~K~~~G~~vtg~~L~~~~~~yv~a  335 (447)
T 3q5d_A          257 IHSCFTNISCFLLPHPGLKVATNPNFD-GKLKEIDDEFIKNLKILIPWLLSPESLDIKEINGNKITCRGLVEYFKAYIKI  335 (447)
T ss_dssp             HHHHEEEEEEEEEECCCHHHHHCTTCC-SBGGGSCHHHHHHHHHHHHHHHSTTTCCCCEETTEECBHHHHHHHHHHHHHH
T ss_pred             HHHhCCCceEEeccCcccchhhhhhhh-cchhhccHHHHHHHHHHHHHhcCcccccccccCCEeecHHHHHHHHHHHHHH
Confidence            999999999999999997654444444 36789999999999999999996  467888999999999999999999999


Q ss_pred             HhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHhhcccC----CCC-ChHHHHHHHHHHHHHHHHHhhhcc-cCChhhhH
Q 004698          335 INNGAVPTISSSWQSVEEAECRRAYDSATETYMSTFDRS----KPP-EEVALGEAHEAAVQKALAVYNAGA-VGVGLARK  408 (736)
Q Consensus       335 in~g~vP~i~s~~~~~~e~~~~~a~~~A~~~Y~~~m~~~----~p~-~e~~L~~~h~~~~~~Al~~F~~~s-~g~~~~~~  408 (736)
                      ||+|.+|+++|+|+++++.+|.+|+++|++.|.+.|++.    .|+ ++++|.+.|..++++|++.|+..+ +|..++.+
T Consensus       336 in~~~~P~~~s~~~~~a~~~~~~a~~~A~~~Y~~~m~~~~~~~~p~~~~~~L~~~h~~~~~~al~~F~~~~~~g~~~~~~  415 (447)
T 3q5d_A          336 YQGEELPHPKSMLQATAEANNLAAVATAKDTYNKKMEEICGGDKPFLAPNDLQTKHLQLKEESVKLFRGVKKMGGEEFSR  415 (447)
T ss_dssp             HHHSCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCCHHHHHHHHHHHHHHHHHHHTTSCCSSCHHHHH
T ss_pred             HhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhccccHHHHH
Confidence            999999999999999999999999999999999999873    353 679999999999999999999986 88889999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 004698          409 KYEGLLQKFFRKAFEDHKKNVYME  432 (736)
Q Consensus       409 ~~~~~L~~~i~~~~e~~~~~n~~~  432 (736)
                      +|+++|+..|++.+++|+++|+..
T Consensus       416 ~~~~~L~~~l~~~~~~~~~~Ne~k  439 (447)
T 3q5d_A          416 RYLQQLESEIDELYIQYIKHNDSK  439 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccc
Confidence            999999999999999999999653

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=98.98  E-value=1.1e-07  Score=92.66  Aligned_cols=166  Identities=14%  Similarity=0.135  Sum_probs=103.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698          521 RSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRK  600 (736)
Q Consensus       521 es~e~e~~~lk~~Le~~e~~~~e~~k~~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~  600 (736)
                      .++++++..++..++...+...+    .+..+++.+.-+..++   +.|+.++..++.+...|...+..++.++..|+.+
T Consensus         6 ~s~~ee~~ywk~~~~~~~q~~~~----le~El~EFqesSrELE---~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K   78 (189)
T 2v71_A            6 SSLKEETAYWKELSMKYKQSFQE----ARDELVEFQEGSRELE---AELEAQLVQAEQRNRDLQADNQRLKYEVEALKEK   78 (189)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566677766655443333222    1222222222222222   3566666777777777777777777777777777


Q ss_pred             HHHHHHH-------hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698          601 YDQVLTK-------QKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQE  673 (736)
Q Consensus       601 yee~~~~-------~~~~~~~~~~~i~~L~~k~~~~E~~~~~~~~q~~~~~~E~~e~~~ky~~~~~e~kalle~~~~~~e  673 (736)
                      |+..-++       .+++...+......|+.+++.+|..++++.++.+.+.+.+.|..+||+.++++. |+|+-....  
T Consensus        79 ~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~-alLE~El~E--  155 (189)
T 2v71_A           79 LEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERN-AFLESELDE--  155 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHH-HHHHHHHHH--
Confidence            7666444       444444555555566669999999999999999999999999999999999988 999988874  


Q ss_pred             HhhHHHHHHHHHHHHHHHhhHHHHH
Q 004698          674 RTSKEMQQREDVLREEFSSTLAEKE  698 (736)
Q Consensus       674 ~~~e~~~~~~~~l~~e~~~~~~e~~  698 (736)
                        -+.+....++|++++++++.|..
T Consensus       156 --Ke~l~~~~QRLkdE~rDLk~El~  178 (189)
T 2v71_A          156 --KESLLVSVQRLKDEARDLRQELA  178 (189)
T ss_dssp             --HHHHHCCC---------------
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHH
Confidence              44677888999999999997774

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=98.55  E-value=0.0004  Score=70.54  Aligned_cols=42  Identities=7%  Similarity=0.143  Sum_probs=16.7

Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698          617 SEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAV  658 (736)
Q Consensus       617 ~~i~~L~~k~~~~E~~~~~~~~q~~~~~~E~~e~~~ky~~~~  658 (736)
                      ..+..++.++..++..+.....+...+..++..|+.....+.
T Consensus       146 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  187 (284)
T 1c1g_A          146 IQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSE  187 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333444444444444444443333

>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}

Probab=98.52  E-value=4.1e-06  Score=74.49  Aligned_cols=96  Identities=14%  Similarity=0.172  Sum_probs=81.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh-------hhHHHHHHHHHHHHHHHHHHHHHHH
Q 004698          577 REKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKS-------RSTAAEARLAAAREQALSAQEEVEE  649 (736)
Q Consensus       577 ~~r~~~L~~~le~lk~e~~e~~~~yee~~~~~~~~~~~~~~~i~~L~~-------k~~~~E~~~~~~~~q~~~~~~E~~e  649 (736)
                      +.+...|...++.+..++.+|+.+|++.-..+......++.+++.|+.       +++.+|..+++++|+.+.+.+.+.|
T Consensus         2 Ek~~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD   81 (111)
T 2v66_B            2 EQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLED   81 (111)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHH
Confidence            457788888899999999999999988776666666666666665554       8999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 004698          650 WKRKYGVAVREAKAALEKAAIVQE  673 (736)
Q Consensus       650 ~~~ky~~~~~e~kalle~~~~~~e  673 (736)
                      +.+||++++++. |+||-....-+
T Consensus        82 ~E~k~n~aiErn-alLE~El~EKe  104 (111)
T 2v66_B           82 FEQRLNQAIERN-AFLESELDEKE  104 (111)
T ss_dssp             HHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-HHHHHHHHHHH
Confidence            999999999988 99998877554

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=98.47  E-value=0.0012  Score=67.02  Aligned_cols=30  Identities=20%  Similarity=0.232  Sum_probs=10.9

Q ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698          622 LKSRSTAAEARLAAAREQALSAQEEVEEWK  651 (736)
Q Consensus       622 L~~k~~~~E~~~~~~~~q~~~~~~E~~e~~  651 (736)
                      ++.++..+...+.....+...+..++..+.
T Consensus       165 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  194 (284)
T 1c1g_A          165 VARKLVIIESDLERAEERAELSEGKCAELE  194 (284)
T ss_dssp             HTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333333333

>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}

Probab=98.25  E-value=4.6e-06  Score=71.52  Aligned_cols=86  Identities=10%  Similarity=0.159  Sum_probs=81.1

Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 004698          512 ERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLK  591 (736)
Q Consensus       512 e~~~L~~k~es~e~e~~~lk~~Le~~e~~~~e~~k~~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk  591 (736)
                      ++..||.+++.+..+...+..++++++..+.+++.+|+++++..    ..++++++.|.+.++.++.....|+.++++++
T Consensus         1 Ei~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R----~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~   76 (86)
T 3swk_A            1 EMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQR----EEAENTLQSFRQDVDNASLARLDLERKVESLQ   76 (86)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            36789999999999999999999999999999999999999977    89999999999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q 004698          592 NEISDWKRKY  601 (736)
Q Consensus       592 ~e~~e~~~~y  601 (736)
                      .|+..+++.|
T Consensus        77 eEl~fLkk~h   86 (86)
T 3swk_A           77 EEIAFLKKLH   86 (86)
T ss_dssp             HHHHHHTTCC
T ss_pred             HHHHHHhhcC
Confidence            9999998644

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=97.77  E-value=5.7e-05  Score=94.15  Aligned_cols=39  Identities=13%  Similarity=0.171  Sum_probs=25.5

Q ss_pred             CceeeCHHHHHHhhccCCCEEEEEeeCCCCCChhHHHHHH
Q 004698           52 GKFRMDPEAVAALQLVKEPIGVVSVCGRARQGKSFILNQL   91 (736)
Q Consensus        52 ~~l~l~~eAl~~L~~i~~~v~vVsv~G~~rtGKS~LlN~l   91 (736)
                      |.|.|-+.|-..+..-..+=+ |-|.|..|+|||.-...+
T Consensus       151 Hi~aia~~ay~~m~~~~~~Q~-i~isGeSGaGKTe~~k~~  189 (1184)
T 1i84_S          151 HIYAIADTAYRSMLQDREDQS-ILCTGESGAGKTENTKKV  189 (1184)
T ss_dssp             CHHHHHHHHHHHHHHHTCCEE-EECCCSTTSSTTHHHHHH
T ss_pred             cHhhhHHHHHHHHHhcCCCcE-EEEecCCCCCccHHHHHH
Confidence            445566666666655555554 558899999999544443

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=97.71  E-value=0.00011  Score=78.02  Aligned_cols=62  Identities=31%  Similarity=0.466  Sum_probs=44.9

Q ss_pred             CCCEEEEEeeCCCCCChhHHHHHHhCCCCccccc-C---CCCCccceEEeeccccccccCCCCceEEEEeecCCCccc
Q 004698           68 KEPIGVVSVCGRARQGKSFILNQLLGRSSGFQVA-S---THRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAY  141 (736)
Q Consensus        68 ~~~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~-~---~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~  141 (736)
                      +.|-++|+|+|..++|||+|+|+|+|..  |... +   ++.....|+..+.          ....++|+||+|+...
T Consensus         7 ~~~~g~v~ivG~~nvGKSTLin~l~g~~--~~i~s~~~~tT~~~~~~~~~~~----------~~~~i~lvDTPG~~~~   72 (308)
T 3iev_A            7 HMKVGYVAIVGKPNVGKSTLLNNLLGTK--VSIISPKAGTTRMRVLGVKNIP----------NEAQIIFLDTPGIYEP   72 (308)
T ss_dssp             CCEEEEEEEECSTTSSHHHHHHHHHTSC--CSCCCSSSCCCCSCEEEEEEET----------TTEEEEEEECCCCCCC
T ss_pred             CCCCCEEEEECCCCCcHHHHHHHHhCCC--ccccCCCCCceeeEEEEEEecC----------CCCeEEEEECcCCCcc
Confidence            4578999999999999999999999986  4322 1   2233344665542          1367999999998654

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=97.68  E-value=8.7e-05  Score=92.52  Aligned_cols=17  Identities=24%  Similarity=0.388  Sum_probs=12.5

Q ss_pred             ceEEEEeecCCCcccCC
Q 004698          127 EYNLLLLDSEGIDAYDQ  143 (736)
Q Consensus       127 ~~~v~llDteG~~~~~~  143 (736)
                      ...|=+||..||..++.
T Consensus       457 ~~~IgvLDi~GFE~f~~  473 (1184)
T 1i84_S          457 ASFLGILDIAGFEIFEI  473 (1184)
T ss_dssp             CEEEEEEECCCCCCCSS
T ss_pred             cceEEEeecCCcCCCCc
Confidence            46788889999876553

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=97.68  E-value=0.00016  Score=74.22  Aligned_cols=61  Identities=18%  Similarity=0.385  Sum_probs=42.9

Q ss_pred             CEEEEEeeCCCCCChhHHHHHHhCCCCcccccCC----CCCccceEEeeccccccccCCCCceEEEEeecCCCcccC
Q 004698           70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVAST----HRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYD  142 (736)
Q Consensus        70 ~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~----~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~~  142 (736)
                      +..-|+|+|..++|||+|+|+|+|.. +|..+..    +..+..|+..|.         |  ..+.|+||+|+.+..
T Consensus        21 ~~~~I~lvG~~g~GKStl~n~l~~~~-~~~~~~~~~~~t~~~~~~~~~~~---------~--~~i~iiDTpG~~~~~   85 (260)
T 2xtp_A           21 SELRIILVGKTGTGKSAAGNSILRKQ-AFESKLGSQTLTKTCSKSQGSWG---------N--REIVIIDTPDMFSWK   85 (260)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHTSC-CSCCCTTSCCCCCSCEEEEEEET---------T--EEEEEEECCGGGGSS
T ss_pred             CceEEEEECCCCCCHHHHHHHHhCCC-CcccCCCCCceeeeeEEEEEEeC---------C--CEEEEEECcCCCCCC
Confidence            34568999999999999999999874 4544332    233344555552         2  568999999986543

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=97.68  E-value=0.0088  Score=58.22  Aligned_cols=142  Identities=17%  Similarity=0.172  Sum_probs=86.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698          574 ISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRK  653 (736)
Q Consensus       574 ~sl~~r~~~L~~~le~lk~e~~e~~~~yee~~~~~~~~~~~~~~~i~~L~~k~~~~E~~~~~~~~q~~~~~~E~~e~~~k  653 (736)
                      ++..+.+..-+..++..++...+++..|++-....+....++.++|..       +|-++.++..+...++.|...||.|
T Consensus         6 ~s~~ee~~ywk~~~~~~~q~~~~le~El~EFqesSrELE~ELE~eL~~-------~Ek~~~~L~~~~~~L~~E~e~~k~K   78 (189)
T 2v71_A            6 SSLKEETAYWKELSMKYKQSFQEARDELVEFQEGSRELEAELEAQLVQ-------AEQRNRDLQADNQRLKYEVEALKEK   78 (189)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455666666666666677777777777766655554444444444444       4447888888888999999999999


Q ss_pred             HHHHHHHHHH---HHHHHH-------HHHHHhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhh
Q 004698          654 YGVAVREAKA---ALEKAA-------IVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELK  723 (736)
Q Consensus       654 y~~~~~e~ka---lle~~~-------~~~e~~~e~~~~~~~~l~~e~~~~~~e~~~~~~~~~~k~~~~~~~~~~~~~~l~  723 (736)
                      |+....++-.   .|+..+       ..+...+-+.+...|.|+...+.+-    .-+.++..||.++.-...=|-++|.
T Consensus        79 ~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~----~SleD~e~kln~aiEr~alLE~El~  154 (189)
T 2v71_A           79 LEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATI----MSLEDFEQRLNQAIERNAFLESELD  154 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH----hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9998776322   222222       2222333344444444444444433    2257777777777777677777776


Q ss_pred             hhh
Q 004698          724 VSF  726 (736)
Q Consensus       724 ~~~  726 (736)
                      ++.
T Consensus       155 EKe  157 (189)
T 2v71_A          155 EKE  157 (189)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            643

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=97.61  E-value=0.00019  Score=72.70  Aligned_cols=61  Identities=28%  Similarity=0.449  Sum_probs=38.2

Q ss_pred             CEEEEEeeCCCCCChhHHHHHHhCCCCccccc----CCCCCccceEEeeccccccccCCCCceEEEEeecCCCcccC
Q 004698           70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVA----STHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYD  142 (736)
Q Consensus        70 ~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~----~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~~  142 (736)
                      +..-|+|+|+.++|||+|+|.|+|... |..+    .....+..+...|.         |  ..+.|+||+|+.+..
T Consensus        28 ~~~~i~lvG~~g~GKStlin~l~g~~~-~~~~~~~~~~t~~~~~~~~~~~---------~--~~i~liDTpG~~~~~   92 (239)
T 3lxx_A           28 SQLRIVLVGKTGAGKSATGNSILGRKV-FHSGTAAKSITKKCEKRSSSWK---------E--TELVVVDTPGIFDTE   92 (239)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTSCC-SCC-------CCSCEEEEEEET---------T--EEEEEEECCSCC---
T ss_pred             CceEEEEECCCCCCHHHHHHHHcCCCc-CccCCCCCceeeeEEEEEEEeC---------C--ceEEEEECCCccCCC
Confidence            344589999999999999999999762 2222    12222333333332         2  468899999997544

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=97.60  E-value=0.0072  Score=62.26  Aligned_cols=99  Identities=17%  Similarity=0.247  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHH
Q 004698          550 DAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAA  629 (736)
Q Consensus       550 ~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~yee~~~~~~~~~~~~~~~i~~L~~k~~~~  629 (736)
                      ..+..+...+..+..++..++..+..+...+..++.+++..+..+..++.+-.. + ...++-+.+.++|+.++.+...+
T Consensus        32 ~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~-v-~~~kE~~aL~kEie~~~~~i~~l  109 (256)
T 3na7_A           32 KDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSE-I-KSERELRSLNIEEDIAKERSNQA  109 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-C-SSSSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-c-CCHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333344444444444444444444444444444444444433333321 1 13334456666666666666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 004698          630 EARLAAAREQALSAQEEVEEW  650 (736)
Q Consensus       630 E~~~~~~~~q~~~~~~E~~e~  650 (736)
                      |.....+..+.+..+.++.+.
T Consensus       110 E~eile~~e~ie~~~~~l~~~  130 (256)
T 3na7_A          110 NREIENLQNEIKRKSEKQEDL  130 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            666666666666655554333

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=97.46  E-value=0.00029  Score=69.90  Aligned_cols=66  Identities=23%  Similarity=0.216  Sum_probs=42.6

Q ss_pred             CEEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcccC
Q 004698           70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYD  142 (736)
Q Consensus        70 ~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~~  142 (736)
                      +...|+|+|..++|||+|+|.|+|... +...+....+|..+-.+....      .....+.|+||+|++...
T Consensus        28 ~~~~i~v~G~~~~GKSslin~l~~~~~-~~~~~~~~~~t~~~~~~~~~~------~~~~~~~l~DtpG~~~~~   93 (223)
T 4dhe_A           28 VQPEIAFAGRSNAGKSTAINVLCNQKR-LAFASKTPGRTQHINYFSVGP------AAEPVAHLVDLPGYGYAE   93 (223)
T ss_dssp             CSCEEEEEESCHHHHHHHHHHHTTCSS-SSCTTCCCCSCCCEEEEEESC------TTSCSEEEEECCCCCSSC
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCCc-ceeecCCCCcccceEEEEecC------CCCCcEEEEcCCCCCccc
Confidence            344688999999999999999998751 112222334566554433221      123568899999986543

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=97.44  E-value=0.00021  Score=75.57  Aligned_cols=58  Identities=28%  Similarity=0.478  Sum_probs=41.7

Q ss_pred             CEEEEEeeCCCCCChhHHHHHHhCCCCcccc-cC---CCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698           70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQV-AS---THRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA  140 (736)
Q Consensus        70 ~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~-~~---~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~  140 (736)
                      ....|+|+|..++|||+|+|+|+|..  |.. .+   ++.....|++.|.           .+.+.|+||+|+..
T Consensus         6 ~~g~V~ivG~~nvGKSTLln~l~g~~--~~ivs~~~~tTr~~i~~i~~~~-----------~~~l~l~DTpG~~~   67 (301)
T 1wf3_A            6 YSGFVAIVGKPNVGKSTLLNNLLGVK--VAPISPRPQTTRKRLRGILTEG-----------RRQIVFVDTPGLHK   67 (301)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTSC--CSCCCSSSCCCCSCEEEEEEET-----------TEEEEEEECCCCCC
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhCCc--eeeecCCCCceeEEEEEEEEeC-----------CcEEEEecCccccc
Confidence            35679999999999999999999976  432 21   2223345665542           36789999999853

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=97.43  E-value=0.00017  Score=76.27  Aligned_cols=57  Identities=30%  Similarity=0.560  Sum_probs=40.7

Q ss_pred             CEEEEEeeCCCCCChhHHHHHHhCCCCcccc-cC---CCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQV-AS---THRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        70 ~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~-~~---~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      +-.+|+|+|+.++|||+|+|.|+|..  +.. ++   ++.....|+..|.           ...+.|+||+|+.
T Consensus         7 r~~~VaIvG~~nvGKSTLln~L~g~~--~~i~s~~~~tTr~~~~gi~~~~-----------~~~i~~iDTpG~~   67 (301)
T 1ega_A            7 YCGFIAIVGRPNVGKSTLLNKLLGQK--ISITSRKAQTTRHRIVGIHTEG-----------AYQAIYVDTPGLH   67 (301)
T ss_dssp             EEEEEEEECSSSSSHHHHHHHHHTCS--EEECCCCSSCCSSCEEEEEEET-----------TEEEEEESSSSCC
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHCCC--ccccCCCCCcceeeEEEEEEEC-----------CeeEEEEECcCCC
Confidence            45689999999999999999999975  432 11   1222335666552           2568899999974

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=97.41  E-value=0.0005  Score=68.87  Aligned_cols=60  Identities=20%  Similarity=0.208  Sum_probs=40.2

Q ss_pred             EEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698           71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA  140 (736)
Q Consensus        71 v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~  140 (736)
                      ..-|.|+|..++|||+|+|+|++..  |.+.+ ....|+++......+       ..+.+.|+||+|...
T Consensus        29 ~~kI~vvG~~~vGKSsLin~l~~~~--~~~~~-~~~~t~~~~~~~~~~-------~~~~~~l~DtpG~~~   88 (228)
T 2qu8_A           29 KKTIILSGAPNVGKSSFMNIVSRAN--VDVQS-YSFTTKNLYVGHFDH-------KLNKYQIIDTPGLLD   88 (228)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHTTTC--EEEEC-C-----CEEEEEEEE-------TTEEEEEEECTTTTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC--CccCC-CCCcceeeeeeeeec-------CCCeEEEEECCCCcC
Confidence            3458899999999999999999876  65433 234466665543221       126789999999854

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=97.40  E-value=0.00042  Score=66.69  Aligned_cols=58  Identities=26%  Similarity=0.383  Sum_probs=39.5

Q ss_pred             EEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCccc
Q 004698           72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAY  141 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~  141 (736)
                      .-|.|+|+.++|||+|+|+|++..  +........+|..+..+..       +   ..+.++||+|++..
T Consensus        24 ~~i~v~G~~~~GKSsli~~l~~~~--~~~~~~~~~~t~~~~~~~~-------~---~~~~i~Dt~G~~~~   81 (195)
T 3pqc_A           24 GEVAFVGRSNVGKSSLLNALFNRK--IAFVSKTPGKTRSINFYLV-------N---SKYYFVDLPGYGYA   81 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHTSC--CSCCCSSCCCCCCEEEEEE-------T---TTEEEEECCCBSSS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCc--cccccCCCCCccCeEEEEE-------C---CcEEEEECCCCccc
Confidence            358899999999999999999886  3333333345555544322       1   23779999998643

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=97.37  E-value=0.00023  Score=66.35  Aligned_cols=59  Identities=29%  Similarity=0.334  Sum_probs=35.0

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698           73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA  140 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~  140 (736)
                      -|.|+|+.++|||+|+|+|++..  |.......++|.....+...+     +|  ..+.++||+|...
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~-----~~--~~~~l~Dt~G~~~   61 (161)
T 2dyk_A            3 KVVIVGRPNVGKSSLFNRLLKKR--SAVVADVPGVTRDLKEGVVET-----DR--GRFLLVDTGGLWS   61 (161)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHCC--C-----------CCEEEEEEE-----TT--EEEEEEECGGGCS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC--eeeccCCCCceecceEEEEEe-----CC--ceEEEEECCCCCC
Confidence            47899999999999999999875  332222223343333332221     22  4688999999864

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=97.32  E-value=0.00033  Score=72.54  Aligned_cols=64  Identities=17%  Similarity=0.232  Sum_probs=41.0

Q ss_pred             CCEEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCccc
Q 004698           69 EPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAY  141 (736)
Q Consensus        69 ~~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~  141 (736)
                      .+-.-|.|+|..++|||+|+|.|+|..- +.+++ ..++|........       +.....+.|+||+|++..
T Consensus        37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~-~~~~~-~~~~t~~~~~~~~-------~~~~~~l~iiDTpG~~~~  100 (270)
T 1h65_A           37 VNSLTILVMGKGGVGKSSTVNSIIGERV-VSISP-FQSEGPRPVMVSR-------SRAGFTLNIIDTPGLIEG  100 (270)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTSCC-SCCCS-SSCCCSSCEEEEE-------EETTEEEEEEECCCSEET
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCc-ccccC-CCCcceeeEEEEE-------eeCCeEEEEEECCCCCCC
Confidence            4456789999999999999999998762 12222 2233332222111       112367999999998654

>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*

Probab=97.31  E-value=0.0017  Score=54.23  Aligned_cols=66  Identities=18%  Similarity=0.238  Sum_probs=59.4

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698          591 KNEISDWKRKYDQVLTKQKAMED-QVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKA  663 (736)
Q Consensus       591 k~e~~e~~~~yee~~~~~~~~~~-~~~~~i~~L~~k~~~~E~~~~~~~~q~~~~~~E~~e~~~ky~~~~~e~ka  663 (736)
                      -.-+.+++..|++.+..++++++ +|+.++++|+.       .+......+.+++.|++|++|.++.+..+.-+
T Consensus         8 ~~il~eiRaQYE~ia~knr~EaE~~y~~k~eel~~-------~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~s   74 (77)
T 3trt_A            8 TAAMRDVRQQYESVAAKNLQEAEEWYKSKFADLSE-------AANRNNDALRQAKQESTEYRRQVQSLTMEVDA   74 (77)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-------HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            35578999999999999999999 99999999888       88888889999999999999999999988744

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=97.31  E-value=0.00024  Score=73.78  Aligned_cols=64  Identities=19%  Similarity=0.200  Sum_probs=38.0

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCCCcccccC----CCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698           73 VVSVCGRARQGKSFILNQLLGRSSGFQVAS----THRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA  140 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~----~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~  140 (736)
                      =|+|+|..++|||+|+|.|++.. .|....    +....|.|+-.....+   ..+|..+.+.|+||+|+++
T Consensus        10 ~I~vvG~~g~GKSTLin~L~~~~-~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~~~~l~liDTpG~~d   77 (274)
T 3t5d_A           10 TLMVVGESGLGKSTLINSLFLTD-LYSPEYPGPSHRIKKTVQVEQSKVLI---KEGGVQLLLTIVDTPGFGD   77 (274)
T ss_dssp             EEEEEECTTSSHHHHHHHHSSSC-C---------------CCCEEEEEEE---CC--CCEEEEEEECCCCSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC-ccccCCCCcccccCCceEEEEEEEEE---ecCCeEEEEEEEECCCccc
Confidence            48899999999999999999874 233211    0112344443333222   1245567899999999864

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=97.23  E-value=0.0005  Score=70.84  Aligned_cols=65  Identities=20%  Similarity=0.221  Sum_probs=40.6

Q ss_pred             CCEEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcccC
Q 004698           69 EPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYD  142 (736)
Q Consensus        69 ~~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~~  142 (736)
                      .+-.-|+|+|..++|||+|+|.|+|....+ +++ ..++|.........+     +  +..+.|+||+|+++..
T Consensus        34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~-~~~-~~~~t~~~~~~~~~~-----~--~~~l~liDTpG~~~~~   98 (262)
T 3def_A           34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVR-VSP-FQAEGLRPVMVSRTM-----G--GFTINIIDTPGLVEAG   98 (262)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHTSCCSC-CCS-SCC-CCCCEEEEEEE-----T--TEEEEEEECCCSEETT
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCCCcc-cCC-CCCcceeeEEEEEEE-----C--CeeEEEEECCCCCCcc
Confidence            345568999999999999999999976222 222 222333222111111     1  2578999999987543

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=97.19  E-value=0.00059  Score=64.00  Aligned_cols=56  Identities=21%  Similarity=0.284  Sum_probs=36.7

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCCCcccc--cCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           73 VVSVCGRARQGKSFILNQLLGRSSGFQV--ASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~--~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      =|.|+|+.++|||+|+|.|++..  |..  .++....+...+         ..++..+.+.++||+|..
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~~--~~~~~~~t~~~~~~~~~---------~~~~~~~~~~~~Dt~G~~   62 (172)
T 2erx_A            5 RVAVFGAGGVGKSSLVLRFVKGT--FRESYIPTVEDTYRQVI---------SCDKSICTLQITDTTGSH   62 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTCC--CCSSCCCCSCEEEEEEE---------EETTEEEEEEEEECCSCS
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC--CCCCCCCCccccEEEEE---------EECCEEEEEEEEECCCch
Confidence            37899999999999999999865  421  122221121111         113455789999999964

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=97.18  E-value=0.62  Score=54.62  Aligned_cols=26  Identities=35%  Similarity=0.498  Sum_probs=22.8

Q ss_pred             CEEEEEeeCCCCCChhHHHHHHhCCC
Q 004698           70 PIGVVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        70 ~v~vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      +-..|+|+|.+++|||+|+|.|+|..
T Consensus        68 ~~~~V~VvG~~naGKSSLlNaLlg~~   93 (695)
T 2j69_A           68 GVFRLLVLGDMKRGKSTFLNALIGEN   93 (695)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            44459999999999999999999874

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A

Probab=97.10  E-value=0.19  Score=47.34  Aligned_cols=104  Identities=22%  Similarity=0.286  Sum_probs=62.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004698          529 LLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQ  608 (736)
Q Consensus       529 ~lk~~Le~~e~~~~e~~k~~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~yee~~~~~  608 (736)
                      .+..+|.++   ..+..++|++.-. +...++..+.+....+.++..+++.+.....++.++           +..-.+.
T Consensus         4 ~lE~qlkea---ae~ad~KyeEvaR-~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsL-----------E~seeka   68 (155)
T 2efr_A            4 QLEDKVEEL---LSKNYHLENEVAR-LKKLLERAEERAELSEGKSAELEEELKTVTNNLKSL-----------EAQAEKY   68 (155)
T ss_dssp             HHHHHHHHH---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHH
T ss_pred             HHHHHHHHH---HHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-----------hhhhhHH
Confidence            344455544   3555567775554 555555555555555555555555555444444332           3333333


Q ss_pred             hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 004698          609 KAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEV  647 (736)
Q Consensus       609 ~~~~~~~~~~i~~L~~k~~~~E~~~~~~~~q~~~~~~E~  647 (736)
                      ....+.|+.+|..|+.++..+|.|...+.|.+..++.++
T Consensus        69 sqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~i  107 (155)
T 2efr_A           69 SQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSI  107 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334668899999999988888888777777776666665

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=97.08  E-value=0.0012  Score=63.60  Aligned_cols=63  Identities=22%  Similarity=0.307  Sum_probs=36.6

Q ss_pred             CEEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcccCC
Q 004698           70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYDQ  143 (736)
Q Consensus        70 ~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~~~  143 (736)
                      +..-|.|+|+.++|||+|+|.|++..---.+.++ ..+|..+..+..       ++   .+.++||+|++....
T Consensus        22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~-~~~t~~~~~~~~-------~~---~~~l~Dt~G~~~~~~   84 (195)
T 1svi_A           22 GLPEIALAGRSNVGKSSFINSLINRKNLARTSSK-PGKTQTLNFYII-------ND---ELHFVDVPGYGFAKV   84 (195)
T ss_dssp             CCCEEEEEEBTTSSHHHHHHHHHTC--------------CCEEEEEE-------TT---TEEEEECCCBCCCSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCccccCCC-CCceeeEEEEEE-------CC---cEEEEECCCCCcccc
Confidence            3456889999999999999999987511112222 224554443321       12   378899999865443

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=97.05  E-value=0.00057  Score=64.80  Aligned_cols=64  Identities=19%  Similarity=0.283  Sum_probs=40.9

Q ss_pred             CCEEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698           69 EPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA  140 (736)
Q Consensus        69 ~~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~  140 (736)
                      .+..=|.|+|+.++|||+|+|.|++..  |....   ..|.|+-.....+.   .+|..+.+.++||+|...
T Consensus         7 ~~~~~i~v~G~~~~GKssl~~~l~~~~--~~~~~---~~~~~~~~~~~~~~---~~~~~~~~~i~Dt~G~~~   70 (181)
T 3tw8_B            7 DHLFKLLIIGDSGVGKSSLLLRFADNT--FSGSY---ITTIGVDFKIRTVE---INGEKVKLQIWDTAGQER   70 (181)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHCSCC-----CC---TTTBSEEEEEEEEE---ETTEEEEEEEEEETTGGG
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCC--CCCcc---CCCceeEEEEEEEE---ECCEEEEEEEEcCCCchh
Confidence            345568999999999999999999875  43211   22334333222221   135567899999999643

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=97.05  E-value=0.28  Score=66.09  Aligned_cols=74  Identities=14%  Similarity=0.263  Sum_probs=41.3

Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhHHH
Q 004698          617 SEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAE  696 (736)
Q Consensus       617 ~~i~~L~~k~~~~E~~~~~~~~q~~~~~~E~~e~~~ky~~~~~e~kalle~~~~~~e~~~e~~~~~~~~l~~e~~~~~~e  696 (736)
                      .+++.++.++..+++++...+.++...+.++.+++.+|+.++.|. ..|+..       .+..+.|+++...=+.++-.|
T Consensus      2014 ~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek-~~L~~e-------~~~~~~kl~rA~~Li~gL~~E 2085 (3245)
T 3vkg_A         2014 EEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRET-EQIKTE-------SSKVKNKVDRSIALLDNLNSE 2085 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH-------HHHHHHHHHHHHHHHHhhhhc
Confidence            444455555555555666666666666666667777777776655 333333       334444555555555555545


Q ss_pred             HH
Q 004698          697 KE  698 (736)
Q Consensus       697 ~~  698 (736)
                      ..
T Consensus      2086 k~ 2087 (3245)
T 3vkg_A         2086 RG 2087 (3245)
T ss_dssp             HH
T ss_pred             cc
Confidence            43

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=97.04  E-value=0.00056  Score=64.01  Aligned_cols=59  Identities=19%  Similarity=0.272  Sum_probs=39.0

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      =|.|+|+.++|||+|+|+|++..  |...   ...|.|.-.....+..   ++..+.+.++||+|..
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~~--~~~~---~~~~~~~~~~~~~~~~---~~~~~~~~~~D~~G~~   63 (170)
T 1ek0_A            5 KLVLLGEAAVGKSSIVLRFVSND--FAEN---KEPTIGAAFLTQRVTI---NEHTVKFEIWDTAGQE   63 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC--CCTT---CCCCSSEEEEEEEEEE---TTEEEEEEEEEECCSG
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC--CCCC---CCCccceeEEEEEEEE---CCEEEEEEEEECCCCh
Confidence            38899999999999999999765  4321   1234444332222211   3456789999999954

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=97.04  E-value=0.00034  Score=75.64  Aligned_cols=26  Identities=27%  Similarity=0.597  Sum_probs=22.8

Q ss_pred             CEEEEEeeCCCCCChhHHHHHHhCCC
Q 004698           70 PIGVVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        70 ~v~vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      .+-.|+|+|.+++|||+|+|.|.|..
T Consensus        33 ~lp~I~vvG~~~sGKSSLln~l~g~~   58 (360)
T 3t34_A           33 SLPAIAVVGGQSSGKSSVLESIVGKD   58 (360)
T ss_dssp             CCCEEEEECBTTSSHHHHHHHHHTSC
T ss_pred             cCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            33489999999999999999999964

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=97.03  E-value=0.21  Score=47.48  Aligned_cols=154  Identities=19%  Similarity=0.214  Sum_probs=90.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698          523 IEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYD  602 (736)
Q Consensus       523 ~e~e~~~lk~~Le~~e~~~~e~~k~~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~ye  602 (736)
                      ..+++..+.++++++...+    +.-.+.-.-+++.-.++....+.++..+..+.+++..|...-+++.+++..+....+
T Consensus         4 ~neKi~~LekQL~E~n~kL----k~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~   79 (168)
T 3o0z_A            4 ANEKLSQLQKQLEEANDLL----RTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILE   79 (168)
T ss_dssp             ------CTHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHH----HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455666666666543331    112244444577777777777888888888888888888888888888888777665


Q ss_pred             HHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 004698          603 QVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQR  682 (736)
Q Consensus       603 e~~~~~~~~~~~~~~~i~~L~~k~~~~E~~~~~~~~q~~~~~~E~~e~~~ky~~~~~e~kalle~~~~~~e~~~e~~~~~  682 (736)
                      +.-...    ......+.+|+.|              ..+++.|+...+.++..+..+-+               .++.+
T Consensus        80 qEr~~r----~q~se~~~elq~r--------------i~~L~~El~~~k~~~~k~~~e~r---------------~L~Ek  126 (168)
T 3o0z_A           80 AERRDR----GHDSEMIGDLQAR--------------ITSLQEEVKHLKHNLEKVEGERK---------------EAQDM  126 (168)
T ss_dssp             HHHHHH----HHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHH---------------HHHHH
T ss_pred             HHHHHH----HHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHH---------------HHHHH
Confidence            443322    2222333344443              33333333333333333333333               34445


Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 004698          683 EDVLREEFSSTLAEKEEEMKEKATKIEHAEQ  713 (736)
Q Consensus       683 ~~~l~~e~~~~~~e~~~~~~~~~~k~~~~~~  713 (736)
                      +..|+-+-.+.-.+..-++|-+|.+|++-+.
T Consensus       127 l~~lEKe~a~~eid~~~eLKalQ~~~eqE~~  157 (168)
T 3o0z_A          127 LNHSEKEKNNLEIDLNYKLKSLQQRLEQEVN  157 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence            5556667777777777889999999998763

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=97.03  E-value=0.00059  Score=63.97  Aligned_cols=60  Identities=22%  Similarity=0.289  Sum_probs=39.8

Q ss_pred             EEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      .=|.|+|+.++|||+|+|.|++..  |...   ...|.|.-.....+.   .++..+.+.++||+|..
T Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~--~~~~---~~~~~~~~~~~~~~~---~~~~~~~~~~~Dt~G~~   66 (170)
T 1z0j_A            7 LKVCLLGDTGVGKSSIMWRFVEDS--FDPN---INPTIGASFMTKTVQ---YQNELHKFLIWDTAGLE   66 (170)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSC--CCTT---CCCCCSEEEEEEEEE---ETTEEEEEEEEEECCSG
T ss_pred             eEEEEECcCCCCHHHHHHHHHcCC--CCCC---CCCceeEEEEEEEEE---ECCeEEEEEEEcCCCch
Confidence            348999999999999999999875  3211   122444433322221   13455789999999974

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=97.01  E-value=0.00051  Score=65.09  Aligned_cols=61  Identities=23%  Similarity=0.328  Sum_probs=40.0

Q ss_pred             EEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        71 v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      ..=|.|+|+.++|||+|+|.|++..  |...   ...|.|+-.....+.   .+|..+.+.++||+|..
T Consensus         7 ~~~i~v~G~~~~GKSsli~~l~~~~--~~~~---~~~~~~~~~~~~~~~---~~~~~~~~~i~Dt~G~~   67 (177)
T 1wms_A            7 LFKVILLGDGGVGKSSLMNRYVTNK--FDTQ---LFHTIGVEFLNKDLE---VDGHFVTMQIWDTAGQE   67 (177)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSC--CCC-------CCSEEEEEEEEE---ETTEEEEEEEEECCCCG
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcCC--CCCC---CCCceeeeEEEEEEE---ECCEEEEEEEEeCCCch
Confidence            3458999999999999999999765  4321   123445443332222   24556789999999953

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=97.00  E-value=0.00074  Score=64.15  Aligned_cols=63  Identities=22%  Similarity=0.311  Sum_probs=41.3

Q ss_pred             CEEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        70 ~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      +..-|.|+|+.++|||+|+|.|++..  |....  ...|.|+-.....+.   .+|..+.+.++||+|..
T Consensus         9 ~~~~i~v~G~~~~GKssli~~l~~~~--~~~~~--~~~t~~~~~~~~~~~---~~~~~~~~~~~Dt~G~~   71 (180)
T 2g6b_A            9 VAFKVMLVGDSGVGKTCLLVRFKDGA--FLAGT--FISTVGIDFRNKVLD---VDGVKVKLQMWDTAGQE   71 (180)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSC--CCCCC--CCCCCSCEEEEEEEE---ETTEEEEEEEEECCCC-
T ss_pred             cceEEEEECcCCCCHHHHHHHHHhCC--CCCCC--cCCceeeEEEEEEEE---ECCEEEEEEEEeCCCcH
Confidence            34458999999999999999999875  43221  123444433332221   24566789999999954

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=96.98  E-value=0.00086  Score=63.24  Aligned_cols=61  Identities=18%  Similarity=0.269  Sum_probs=34.5

Q ss_pred             EEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698           71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA  140 (736)
Q Consensus        71 v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~  140 (736)
                      ..-|.|+|+.++|||+|+|+|.+..  |.....    |.|.=.....+.   .+|..+.+.++||+|...
T Consensus         4 ~~ki~i~G~~~vGKSsl~~~l~~~~--~~~~~~----~~~~~~~~~~~~---~~~~~~~~~~~D~~g~~~   64 (175)
T 2nzj_A            4 LYRVVLLGDPGVGKTSLASLFAGKQ--ERDLHE----QLGEDVYERTLT---VDGEDTTLVVVDTWEAEK   64 (175)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHCC-------CC----CSSSSEEEEEEE---ETTEEEEEEEECCC----
T ss_pred             EEEEEEECCCCccHHHHHHHHhcCC--CccccC----ccccceeEEEEE---ECCEEEEEEEEecCCCCc
Confidence            3458999999999999999999875  432211    122111111111   135567899999999753

>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=96.96  E-value=0.0073  Score=55.63  Aligned_cols=53  Identities=11%  Similarity=0.121  Sum_probs=18.6

Q ss_pred             HHHhhHHHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698          605 LTKQKAMED-QVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAA  664 (736)
Q Consensus       605 ~~~~~~~~~-~~~~~i~~L~~k~~~~E~~~~~~~~q~~~~~~E~~e~~~ky~~~~~e~kal  664 (736)
                      +++++++++ +|+.++++|+.       .+......+.+++.|++|++|.++.+..+.-++
T Consensus         2 a~knr~eaE~~y~~K~eel~~-------~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l   55 (129)
T 3tnu_B            2 ANRSRTEAESWYQTKYEELQQ-------TAGRHGDDLRNTKHEISEMNRMIQRLRAEIDNV   55 (129)
T ss_dssp             ---------------------------------------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHHHHH-------HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456777777 99999998888       778888889999999999999999888877444

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=96.95  E-value=0.00089  Score=62.35  Aligned_cols=58  Identities=28%  Similarity=0.298  Sum_probs=36.5

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      =|.|+|+.++|||+|+|.|++..  |..  .. +.|.|.-... .+   ..++..+.+.|+||+|..
T Consensus         6 ~i~v~G~~~~GKssl~~~l~~~~--~~~--~~-~~t~~~~~~~-~~---~~~~~~~~~~l~D~~G~~   63 (168)
T 1u8z_A            6 KVIMVGSGGVGKSALTLQFMYDE--FVE--DY-EPTKADSYRK-KV---VLDGEEVQIDILDTAGQE   63 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC--CCS--CC-CTTCCEEEEE-EE---EETTEEEEEEEEECCC--
T ss_pred             EEEEECCCCCCHHHHHHHHHhCc--cCC--CC-CCCcceEEEE-EE---EECCEEEEEEEEECCCcc
Confidence            48899999999999999999765  421  11 1233322211 11   123556789999999953

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=96.95  E-value=0.00072  Score=63.47  Aligned_cols=60  Identities=22%  Similarity=0.283  Sum_probs=38.6

Q ss_pred             EEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      .-|.|+|+.++|||+|+|+|++..  |....   ..|.|.-.....+.   .+|..+.+.++||+|..
T Consensus         7 ~~i~v~G~~~~GKssli~~l~~~~--~~~~~---~~t~~~~~~~~~~~---~~~~~~~l~i~Dt~G~~   66 (170)
T 1z08_A            7 FKVVLLGEGCVGKTSLVLRYCENK--FNDKH---ITTLGASFLTKKLN---IGGKRVNLAIWDTAGQE   66 (170)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHCC--CCSSC---CCCCSCEEEEEEEE---SSSCEEEEEEEECCCC-
T ss_pred             eEEEEECcCCCCHHHHHHHHHcCC--CCcCC---CCccceEEEEEEEE---ECCEEEEEEEEECCCcH
Confidence            458999999999999999999765  32211   12333222211111   24566889999999964

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=96.95  E-value=0.00096  Score=63.76  Aligned_cols=58  Identities=26%  Similarity=0.301  Sum_probs=36.4

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      =|.|+|+.++|||+|+|.|++..  |..  ...+.+ +..... .+   ..+|..+.+.|+||+|..
T Consensus         6 ki~v~G~~~~GKSsli~~l~~~~--~~~--~~~~t~-~~~~~~-~~---~~~~~~~~~~i~Dt~G~~   63 (189)
T 4dsu_A            6 KLVVVGADGVGKSALTIQLIQNH--FVD--EYDPTI-EDSYRK-QV---VIDGETCLLDILDTAGQE   63 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSS--CCC--CCCTTC-CEEEEE-EE---EETTEEEEEEEEECCCC-
T ss_pred             EEEEECCCCCCHHHHHHHHHhCC--CCC--CCCCCc-hheEEE-EE---EECCcEEEEEEEECCCcH
Confidence            48899999999999999999765  321  111222 221111 11   123556778899999964

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=96.95  E-value=0.0008  Score=69.35  Aligned_cols=60  Identities=17%  Similarity=0.067  Sum_probs=39.8

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcccC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYD  142 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~~  142 (736)
                      .|+++|..++|||+|+|.|.|..  +.+++.. ..|.........+     +|  ..+.|+||+|+.+..
T Consensus         3 kI~lvG~~n~GKSTL~n~L~g~~--~~v~~~p-g~Tv~~~~~~~~~-----~~--~~~~lvDtpG~~~~~   62 (256)
T 3iby_A            3 HALLIGNPNCGKTTLFNALTNAN--QRVGNWP-GVTVEKKTGEFLL-----GE--HLIEITDLPGVYSLV   62 (256)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTTS--EEEEECT-TSSSEEEEEEEEE-----TT--EEEEEEECCCCSSCC
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC--CCccCCC-CceEEEEEEEEEE-----CC--eEEEEEeCCCccccc
Confidence            48899999999999999999986  5555432 2232222221111     12  468899999986543

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=96.95  E-value=0.00061  Score=64.46  Aligned_cols=60  Identities=22%  Similarity=0.305  Sum_probs=39.7

Q ss_pred             EEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      .-|.|+|+.++|||+|+|.|++..  |...   ...|.|+-.+...+.   .++..+.+.++||+|..
T Consensus        15 ~~i~v~G~~~~GKssli~~l~~~~--~~~~---~~~~~~~~~~~~~~~---~~~~~~~~~~~Dt~G~~   74 (179)
T 2y8e_A           15 FKLVFLGEQSVGKTSLITRFMYDS--FDNT---YQATIGIDFLSKTMY---LEDRTVRLQLWDTAGQE   74 (179)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSC--CCSS---CCCCCSEEEEEEEEE---ETTEEEEEEEEEECCSG
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCC--CCCC---CCCceeeEEEEEEEE---ECCeEEEEEEEECCCcH
Confidence            348899999999999999999765  4321   123444433322221   13555789999999954

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=96.94  E-value=0.001  Score=61.90  Aligned_cols=58  Identities=26%  Similarity=0.326  Sum_probs=37.3

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      =|.|+|+.++|||+|+|.|++..  |..  ...+ |.|.... ..+   ..++..+.+.|+||+|..
T Consensus         5 ~i~v~G~~~~GKSsli~~l~~~~--~~~--~~~~-~~~~~~~-~~~---~~~~~~~~~~l~D~~G~~   62 (167)
T 1kao_A            5 KVVVLGSGGVGKSALTVQFVTGT--FIE--KYDP-TIEDFYR-KEI---EVDSSPSVLEILDTAGTE   62 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC--CCS--CCCT-TCCEEEE-EEE---EETTEEEEEEEEECCCTT
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC--Ccc--cCCC-CcceeEE-EEE---EECCEEEEEEEEECCCch
Confidence            48999999999999999999765  321  1122 3332221 111   123556778999999953

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=96.94  E-value=0.0005  Score=64.31  Aligned_cols=59  Identities=20%  Similarity=0.322  Sum_probs=37.5

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      =|.|+|+.++|||+|+|.|++..  |....   ..|.|+-.....+.   .++..+.+.++||+|..
T Consensus         7 ~i~v~G~~~~GKssl~~~l~~~~--~~~~~---~~t~~~~~~~~~~~---~~~~~~~~~l~Dt~G~~   65 (168)
T 1z2a_A            7 KMVVVGNGAVGKSSMIQRYCKGI--FTKDY---KKTIGVDFLERQIQ---VNDEDVRLMLWDTAGQE   65 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHCC--CCCCS---SCCCSSSEEEEEEE---ETTEEEEEEEECCTTGG
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC--CCCCC---CCceEEEEEEEEEE---ECCEEEEEEEEcCCCcH
Confidence            47899999999999999999764  43211   22333211111111   13445789999999954

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=96.93  E-value=0.0012  Score=64.39  Aligned_cols=64  Identities=19%  Similarity=0.288  Sum_probs=42.7

Q ss_pred             CCEEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698           69 EPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA  140 (736)
Q Consensus        69 ~~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~  140 (736)
                      .+..-|.|+|+.++|||+|+|+|++..  |...   ...|.|+-.....+.   .++..+.+.|+||+|...
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~~~~--~~~~---~~~t~~~~~~~~~~~---~~~~~~~~~l~Dt~G~~~   69 (207)
T 1vg8_A            6 KVLLKVIILGDSGVGKTSLMNQYVNKK--FSNQ---YKATIGADFLTKEVM---VDDRLVTMQIWDTAGQER   69 (207)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHSC--CCSS---CCCCCSEEEEEEEEE---SSSCEEEEEEEEECSSGG
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcCC--CCCC---CCCcccceEEEEEEE---ECCEEEEEEEEeCCCcHH
Confidence            455679999999999999999999875  4321   123444433332222   235568899999999643

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=96.93  E-value=0.001  Score=62.91  Aligned_cols=61  Identities=23%  Similarity=0.175  Sum_probs=39.5

Q ss_pred             CEEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        70 ~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      +..-|.|+|..++|||+|+|.|++..  |.-  . .+.|.|.-... .+   ..+|..+.+.|+||+|..
T Consensus         8 ~~~~i~v~G~~~~GKssli~~l~~~~--~~~--~-~~~t~~~~~~~-~~---~~~~~~~~~~~~Dt~G~~   68 (181)
T 2fn4_A            8 ETHKLVVVGGGGVGKSALTIQFIQSY--FVS--D-YDPTIEDSYTK-IC---SVDGIPARLDILDTAGQE   68 (181)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHHSS--CCS--S-CCTTCCEEEEE-EE---EETTEEEEEEEEECCCTT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCc--Ccc--c-cCCCcCceEEE-EE---EECCEEEEEEEEECCCch
Confidence            34458999999999999999999874  321  1 12233333221 11   123555788999999964

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=96.93  E-value=0.00082  Score=62.86  Aligned_cols=60  Identities=18%  Similarity=0.253  Sum_probs=38.9

Q ss_pred             EEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      .-|.|+|+.++|||+|+|+|++..  |..   ....|.|+-.....+..   ++..+.+.++||+|..
T Consensus         7 ~~i~v~G~~~~GKssli~~l~~~~--~~~---~~~~~~~~~~~~~~~~~---~~~~~~~~~~D~~G~~   66 (170)
T 1r2q_A            7 FKLVLLGESAVGKSSLVLRFVKGQ--FHE---FQESTIGAAFLTQTVCL---DDTTVKFEIWDTAGQE   66 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC--CCT---TCCCCSSEEEEEEEEEE---TTEEEEEEEEEECCSG
T ss_pred             EEEEEECCCCCCHHHHHHHHHcCC--CCC---CCCCccceEEEEEEEEE---CCEEEEEEEEeCCCcH
Confidence            348899999999999999999754  321   11234443332222211   3446789999999964

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=96.92  E-value=0.0007  Score=65.27  Aligned_cols=63  Identities=19%  Similarity=0.247  Sum_probs=34.9

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      |+|+|+.++|||+|+|+|.|....|.   +....|.|+-+....+.....++..+.+.++||.|..
T Consensus         5 v~ivG~~gvGKStLl~~l~~~~~~~~---~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~   67 (184)
T 2zej_A            5 LMIVGNTGSGKTTLLQQLMKTKKSDL---GMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGRE   67 (184)
T ss_dssp             EEEESCTTSSHHHHHHHHTCC--------------CSEEEEEEEC---------CEEEEEEECSHH
T ss_pred             EEEECCCCCCHHHHHHHHhcCCCccC---CCcceeccEEeEEeeeccccCCCCceEEEEEecCCCH
Confidence            78999999999999999998532342   1123466665443332211123456788999999964

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=96.92  E-value=0.00075  Score=65.06  Aligned_cols=23  Identities=26%  Similarity=0.296  Sum_probs=21.1

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      =|+|+|+.++|||+|+|.|++..
T Consensus         9 ki~v~G~~~~GKSsli~~l~~~~   31 (208)
T 3clv_A            9 KTVLLGESSVGKSSIVLRLTKDT   31 (208)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHhCc
Confidence            48899999999999999999875

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=96.92  E-value=0.00097  Score=68.75  Aligned_cols=61  Identities=23%  Similarity=0.159  Sum_probs=40.9

Q ss_pred             EEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcccC
Q 004698           72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYD  142 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~~  142 (736)
                      .-|+++|..++|||+|+|+|.|..  |.+++.. ..|.........       ...+.+.|+||+|..+..
T Consensus         6 ~kI~lvG~~nvGKTsL~n~l~g~~--~~~~~~p-g~tv~~~~~~~~-------~~~~~~~l~DtpG~~~~~   66 (258)
T 3a1s_A            6 VKVALAGCPNVGKTSLFNALTGTK--QYVANWP-GVTVEKKEGVFT-------YKGYTINLIDLPGTYSLG   66 (258)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTTC--EEEEECT-TSCCEEEEEEEE-------ETTEEEEEEECCCCSSCC
T ss_pred             eEEEEECCCCCCHHHHHHHHHCCC--CcccCCC-CceEEEEEEEEE-------ECCeEEEEEECCCcCccC
Confidence            458999999999999999999876  5555432 233332222111       123678999999986543

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=96.90  E-value=0.0016  Score=67.60  Aligned_cols=60  Identities=20%  Similarity=0.217  Sum_probs=39.6

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcccC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYD  142 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~~  142 (736)
                      .|+++|..++|||+|+|.|.|..  |.+++.. ..|.......  +.   .+|  ..+.|+||+|+.+..
T Consensus         5 ~I~lvG~~n~GKSTLin~l~g~~--~~v~~~~-g~t~~~~~~~--~~---~~~--~~~~liDtpG~~~~~   64 (274)
T 3i8s_A            5 TIGLIGNPNSGKTTLFNQLTGSR--QRVGNWA-GVTVERKEGQ--FS---TTD--HQVTLVDLPGTYSLT   64 (274)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTTC--EEEEECT-TSSSEEEEEE--EE---CSS--CEEEEEECCCCSCSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC--cccCCCC-CeeEEEEEEE--EE---eCC--CceEEEECcCCCccc
Confidence            58899999999999999999986  6665432 1232221111  11   012  457889999987654

>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=96.90  E-value=0.0061  Score=56.31  Aligned_cols=54  Identities=19%  Similarity=0.202  Sum_probs=13.8

Q ss_pred             HHHHhhHHHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698          604 VLTKQKAMED-QVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAA  664 (736)
Q Consensus       604 ~~~~~~~~~~-~~~~~i~~L~~k~~~~E~~~~~~~~q~~~~~~E~~e~~~ky~~~~~e~kal  664 (736)
                      .++.++++++ +|+.++++|+.       .+......+..++.|++|++|.++.+..+.-++
T Consensus         3 ia~knr~eaE~~y~~K~eel~~-------~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l   57 (131)
T 3tnu_A            3 TAEKNRKDAEEWFFTKTEELNR-------EVATNSELVQSGKSEISELRRTMQNLEIELQSQ   57 (131)
T ss_dssp             ---------------------------------------------CHHHHHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHHHHHHHHHH-------HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566777777 99999998888       777888889999999999999999988876443

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=96.89  E-value=0.00097  Score=64.46  Aligned_cols=59  Identities=17%  Similarity=0.268  Sum_probs=39.3

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      =|.|+|+.++|||+|+|+|++..  |...   ...|.|+-.....+..   ++..+.+.|+||+|..
T Consensus        27 ki~v~G~~~~GKSsLi~~l~~~~--~~~~---~~~t~~~~~~~~~~~~---~~~~~~~~i~Dt~G~~   85 (193)
T 2oil_A           27 KVVLIGESGVGKTNLLSRFTRNE--FSHD---SRTTIGVEFSTRTVML---GTAAVKAQIWDTAGLE   85 (193)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHSC--CCSS---CCCCSSEEEEEEEEEE---TTEEEEEEEEEESCCC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC--CCCC---CCCccceeEEEEEEEE---CCEEEEEEEEeCCCch
Confidence            48999999999999999999865  4321   1234444332222211   3455789999999974

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=96.88  E-value=0.0011  Score=68.66  Aligned_cols=61  Identities=23%  Similarity=0.237  Sum_probs=40.2

Q ss_pred             EEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCccc
Q 004698           71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAY  141 (736)
Q Consensus        71 v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~  141 (736)
                      +..|+++|+.++|||+|+|.|.|..  |.+++.. ..|.......  +..   +|  ..+.++||+|+.+.
T Consensus         3 ~~~i~lvG~~g~GKTTL~n~l~g~~--~~~~~~~-~~t~~~~~~~--~~~---~~--~~~~l~DtpG~~~~   63 (271)
T 3k53_A            3 LKTVALVGNPNVGKTTIFNALTGLR--QHVGNWP-GVTVEKKEGI--MEY---RE--KEFLVVDLPGIYSL   63 (271)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHTTC--EEEEECT-TSSCEEEEEE--EEE---TT--EEEEEEECCCCSCC
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCC--cccCCCC-CeEEEeeEEE--EEE---CC--ceEEEEeCCCcccc
Confidence            4568999999999999999999986  5555431 1233222221  111   12  45889999998654

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=96.87  E-value=0.0012  Score=61.15  Aligned_cols=58  Identities=28%  Similarity=0.316  Sum_probs=36.4

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      -|.|+|+.++|||+|+|.|++..  |.-  ...+ |.|.... ..+   ..++..+.+.++||+|..
T Consensus         5 ~i~v~G~~~~GKssl~~~l~~~~--~~~--~~~~-~~~~~~~-~~~---~~~~~~~~~~~~D~~G~~   62 (166)
T 2ce2_X            5 KLVVVGAGGVGKSALTIQLIQNH--FVD--ECDP-TIEDSYR-KQV---VIDGETCLLDILDTAGQE   62 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSS--CCS--CCCT-TCCEEEE-EEE---EETTEEEEEEEEECCCCS
T ss_pred             EEEEECCCCCCHHHHHHHHHhCc--Ccc--ccCC-ccceEEE-EEE---EECCEEEEEEEEECCCch
Confidence            37899999999999999999764  321  1112 2222111 111   123556788999999954

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=96.86  E-value=0.00076  Score=63.79  Aligned_cols=61  Identities=25%  Similarity=0.371  Sum_probs=38.8

Q ss_pred             EEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        71 v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      ..-|.|+|..++|||+|+|+|++..  |..   ..+.|.|+-.....+.   .++..+.+.|+||+|..
T Consensus        15 ~~~i~v~G~~~~GKSsli~~l~~~~--~~~---~~~~t~~~~~~~~~~~---~~~~~~~~~l~Dt~G~~   75 (179)
T 1z0f_A           15 IFKYIIIGDMGVGKSCLLHQFTEKK--FMA---DCPHTIGVEFGTRIIE---VSGQKIKLQIWDTAGQE   75 (179)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSC--CCS---SCTTSCCCCEEEEEEE---ETTEEEEEEEEECTTGG
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCC--CCC---CCCCccceEEEEEEEE---ECCeEEEEEEEECCCCh
Confidence            4458999999999999999999765  321   1122333221111111   13456789999999953

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=96.85  E-value=0.00074  Score=63.27  Aligned_cols=59  Identities=20%  Similarity=0.337  Sum_probs=35.8

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      =|.|+|+.++|||+|+|.|++..  |....   ..|.|+-.....+   ..+|..+.+.++||+|..
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~~--~~~~~---~~~~~~~~~~~~~---~~~~~~~~~~l~D~~G~~   63 (170)
T 1g16_A            5 KILLIGDSGVGKSCLLVRFVEDK--FNPSF---ITTIGIDFKIKTV---DINGKKVKLQIWDTAGQE   63 (170)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHCC--CCC----------CCEEEEEE---ESSSCEEEEEEECCTTGG
T ss_pred             EEEEECcCCCCHHHHHHHHHhCC--CCCCC---CCccceeEEEEEE---EECCEEEEEEEEeCCCCh
Confidence            48999999999999999999765  42211   1122211110111   123556789999999964

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=96.83  E-value=0.0013  Score=61.26  Aligned_cols=58  Identities=22%  Similarity=0.192  Sum_probs=38.4

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      =|.|+|+.++|||+|+|+|++..  |.-.   ...|.|.-.. ..+   ..++..+.+.++||+|..
T Consensus         5 ki~v~G~~~~GKssli~~l~~~~--~~~~---~~~t~~~~~~-~~~---~~~~~~~~~~l~D~~G~~   62 (167)
T 1c1y_A            5 KLVVLGSGGVGKSALTVQFVQGI--FVEK---YDPTIEDSYR-KQV---EVDCQQCMLEILDTAGTE   62 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHCC--CCCS---CCCCSEEEEE-EEE---ESSSCEEEEEEEEECSSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC--CCCC---CCCCccceEE-EEE---EECCEEEEEEEEECCChH
Confidence            38899999999999999999754  3211   1224443322 111   124566889999999964

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=96.82  E-value=0.0013  Score=64.15  Aligned_cols=61  Identities=20%  Similarity=0.259  Sum_probs=40.5

Q ss_pred             EEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        71 v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      ..=|.|+|+.++|||+|+|+|++..  |....   ..|.|+-.....+.   .++..+.+.|+||+|..
T Consensus         8 ~~ki~v~G~~~~GKSsli~~l~~~~--~~~~~---~~t~~~~~~~~~~~---~~~~~~~~~l~Dt~G~~   68 (203)
T 1zbd_A            8 MFKILIIGNSSVGKTSFLFRYADDS--FTPAF---VSTVGIDFKVKTIY---RNDKRIKLQIWDTAGLE   68 (203)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTCC--CCSCC---CCCCSEEEEEEEEE---ETTEEEEEEEEEECCSG
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcCC--CCCCc---CCccceeEEEEEEE---ECCeEEEEEEEECCCch
Confidence            4458999999999999999999876  43211   22334332222221   13556789999999964

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=96.82  E-value=0.00085  Score=63.00  Aligned_cols=61  Identities=18%  Similarity=0.112  Sum_probs=34.5

Q ss_pred             EEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698           72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA  140 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~  140 (736)
                      .=|.|+|+.++|||+|+|+|.+..  |...+.   .|.+.-.....+.   .+|..+.+.++||+|...
T Consensus         3 ~ki~ivG~~~~GKSsli~~l~~~~--~~~~~~---~~~~~~~~~~~~~---~~~~~~~~~i~D~~g~~~   63 (169)
T 3q85_A            3 FKVMLVGESGVGKSTLAGTFGGLQ--GDHAHE---MENSEDTYERRIM---VDKEEVTLIVYDIWEQGD   63 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHCC-----------------CEEEEEEE---ETTEEEEEEEECCCCC--
T ss_pred             EEEEEECCCCCCHHHHHHHHHhcc--Cccccc---CCCcCCeeeEEEE---ECCeEEEEEEEECCCccc
Confidence            348899999999999999999765  221111   1111111111111   245568899999999753

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=96.80  E-value=0.0021  Score=62.46  Aligned_cols=62  Identities=26%  Similarity=0.270  Sum_probs=40.0

Q ss_pred             CCEEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           69 EPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        69 ~~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      .+..-|.|+|+.++|||+|+|.|++..  |..  .. +.|.|.-.. ..+   ..+|..+.+.|+||+|..
T Consensus        12 ~~~~ki~v~G~~~~GKSsli~~l~~~~--~~~--~~-~~t~~~~~~-~~~---~~~~~~~~~~l~Dt~G~~   73 (206)
T 2bov_A           12 LALHKVIMVGSGGVGKSALTLQFMYDE--FVE--DY-EPTKADSYR-KKV---VLDGEEVQIDILDTAGQE   73 (206)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHSC--CCT--TC-CTTCCEEEE-EEE---EETTEEEEEEEEECCCTT
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhCC--CCC--CC-CCccceEEE-EEE---EECCEEEEEEEEcCCChh
Confidence            345568999999999999999999765  421  11 223332221 111   123556789999999954

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=96.79  E-value=0.00062  Score=71.69  Aligned_cols=26  Identities=31%  Similarity=0.578  Sum_probs=23.4

Q ss_pred             CEEEEEeeCCCCCChhHHHHHHhCCC
Q 004698           70 PIGVVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        70 ~v~vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      ++..|+|+|.+++|||+|+|.|+|..
T Consensus        23 ~~~~I~vvG~~~~GKSTlln~l~g~~   48 (315)
T 1jwy_B           23 DLPQIVVVGSQSSGKSSVLENIVGRD   48 (315)
T ss_dssp             CCCEEEEEECSSSSHHHHHHHHHTSC
T ss_pred             CCCeEEEEcCCCCCHHHHHHHHHCCC
Confidence            45579999999999999999999975

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.77  E-value=0.0014  Score=63.45  Aligned_cols=57  Identities=21%  Similarity=0.242  Sum_probs=36.7

Q ss_pred             EEEEeeCCCCCChhHHHHHHhCCCCcccc--cCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           72 GVVSVCGRARQGKSFILNQLLGRSSGFQV--ASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~~~~~gF~~--~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      .=|.|+|..++|||+|+|.|++..  |..  .++....+...+         ..++..+.+.|+||+|..
T Consensus         9 ~ki~vvG~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~---------~~~~~~~~~~l~Dt~G~~   67 (199)
T 2gf0_A            9 YRVVVFGAGGVGKSSLVLRFVKGT--FRDTYIPTIEDTYRQVI---------SCDKSVCTLQITDTTGSH   67 (199)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHSC--CCCTTSCCCCEEEEEEE---------EETTEEEEEEEEECCGGG
T ss_pred             eEEEEECCCCCcHHHHHHHHHcCC--CCCcccCccccceeEEE---------EECCEEEEEEEEeCCChH
Confidence            348999999999999999999764  321  122211111111         123556789999999954

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=96.75  E-value=0.0014  Score=62.51  Aligned_cols=58  Identities=29%  Similarity=0.489  Sum_probs=35.0

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      -|+|+|+.++|||+|+|.|.+..  |...+...+.|.+.....  +   ..+|  ..+.++||+|+.
T Consensus         6 ki~ivG~~g~GKStLl~~l~~~~--~~~~~~~~~~t~~~~~~~--~---~~~~--~~~~l~Dt~G~~   63 (172)
T 2gj8_A            6 KVVIAGRPNAGKSSLLNALAGRE--AAIVTDIAGTTRDVLREH--I---HIDG--MPLHIIDTAGLR   63 (172)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSC--CSCCCSSTTCCCSCEEEE--E---EETT--EEEEEEECCCCS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC--cceeeCCCCceeceeeEE--E---EECC--eEEEEEECCCcc
Confidence            48899999999999999999875  321111112232221110  1   0123  357889999974

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=96.75  E-value=0.0016  Score=61.95  Aligned_cols=62  Identities=26%  Similarity=0.336  Sum_probs=39.7

Q ss_pred             EEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCccc
Q 004698           71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAY  141 (736)
Q Consensus        71 v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~  141 (736)
                      ..-|.|+|+.++|||+|+|.|++..  |..  .. +.|.|.-... .+   ..+|..+.+.++||+|....
T Consensus         6 ~~ki~~~G~~~~GKSsli~~l~~~~--~~~--~~-~~t~~~~~~~-~~---~~~~~~~~~~l~Dt~G~~~~   67 (181)
T 3t5g_A            6 SRKIAILGYRSVGKSSLTIQFVEGQ--FVD--SY-DPTIENTFTK-LI---TVNGQEYHLQLVDTAGQDEY   67 (181)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSS--CCS--CC-CTTCCEEEEE-EE---EETTEEEEEEEEECCCCCTT
T ss_pred             eEEEEEECcCCCCHHHHHHHHHcCC--CCC--CC-CCCccccEEE-EE---EECCEEEEEEEEeCCCchhh
Confidence            3458899999999999999999654  321  11 1233332211 11   12455678899999997543

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.74  E-value=0.001  Score=65.24  Aligned_cols=62  Identities=23%  Similarity=0.331  Sum_probs=38.9

Q ss_pred             EEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698           71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA  140 (736)
Q Consensus        71 v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~  140 (736)
                      ..-|.|+|+.++|||+|+|.|++..  |....   ..|.|+-.....+.   .+|..+.+.|+||+|...
T Consensus        20 ~~~i~v~G~~~~GKSsli~~l~~~~--~~~~~---~~~~~~~~~~~~~~---~~~~~~~~~l~Dt~G~~~   81 (213)
T 3cph_A           20 IMKILLIGDSGVGKSCLLVRFVEDK--FNPSF---ITTIGIDFKIKTVD---INGKKVKLQLWDTAGQER   81 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHCC--CCCSS---SCCCSCCEEEEEEE---ETTEEEEEEEECCTTGGG
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCC--CCccc---CCcccceEEEEEEE---ECCEEEEEEEEeCCCcHH
Confidence            3458999999999999999999765  43211   11222211111111   135557899999999643

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=96.74  E-value=0.0013  Score=64.84  Aligned_cols=60  Identities=17%  Similarity=0.255  Sum_probs=38.4

Q ss_pred             EEEEeeCCCCCChhHHHHHHhCCCCcccc--cCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698           72 GVVSVCGRARQGKSFILNQLLGRSSGFQV--ASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA  140 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~~~~~gF~~--~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~  140 (736)
                      .=|+|+|..++|||+|+|+|++..  |..  .++....+..+...       ..+|..+.+.|+||+|...
T Consensus        12 ~ki~vvG~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~-------~~~~~~~~~~l~Dt~G~~~   73 (218)
T 4djt_A           12 YKICLIGDGGVGKTTYINRVLDGR--FEKNYNATVGAVNHPVTFL-------DDQGNVIKFNVWDTAGQEK   73 (218)
T ss_dssp             EEEEEECCTTSSHHHHHCBCTTCS--TTCEEETTTTEEEEEEEEE-------BTTSCEEEEEEEEECSGGG
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCC--CCCCCCCccceeeEEEEEE-------eCCCcEEEEEEEecCCchh
Confidence            348899999999999999999765  321  22222222222221       1234447899999999653

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=96.74  E-value=0.0014  Score=68.58  Aligned_cols=57  Identities=28%  Similarity=0.320  Sum_probs=33.2

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCccc
Q 004698           73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAY  141 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~  141 (736)
                      -|+|+|.+++|||+|+|.|+|.. .+.+++.. .+|+..- |.   ..    +.  .+.|+||+|+...
T Consensus       122 ~v~~vG~~nvGKSsliN~l~~~~-~~~~~~~~-g~T~~~~-~~---~~----~~--~~~l~DtpG~~~~  178 (282)
T 1puj_A          122 RALIIGIPNVGKSTLINRLAKKN-IAKTGDRP-GITTSQQ-WV---KV----GK--ELELLDTPGILWP  178 (282)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSC-CC-------------C-CE---EE----TT--TEEEEECCCCCCS
T ss_pred             eEEEEecCCCchHHHHHHHhcCc-eeecCCCC-CeeeeeE-EE---Ee----CC--CEEEEECcCcCCC
Confidence            48899999999999999999875 23444331 2444431 21   11    11  3788999999654

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=96.72  E-value=0.0015  Score=62.79  Aligned_cols=60  Identities=22%  Similarity=0.331  Sum_probs=39.9

Q ss_pred             EEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      .-|.|+|+.++|||+|+|+|++..  |...   ...|.|+-.....+.   .++..+.+.|+||+|..
T Consensus        16 ~~i~v~G~~~~GKssli~~l~~~~--~~~~---~~~t~~~~~~~~~~~---~~~~~~~~~i~Dt~G~~   75 (195)
T 1x3s_A           16 LKILIIGESGVGKSSLLLRFTDDT--FDPE---LAATIGVDFKVKTIS---VDGNKAKLAIWDTAGQE   75 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC--CCTT---CCCCCSEEEEEEEEE---ETTEEEEEEEEEECSSG
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCC--CCcc---CCCccceEEEEEEEE---ECCeEEEEEEEeCCCch
Confidence            458899999999999999999765  4321   122444433222221   13456789999999964

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=96.71  E-value=0.0014  Score=62.04  Aligned_cols=64  Identities=14%  Similarity=0.198  Sum_probs=36.9

Q ss_pred             CCEEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           69 EPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        69 ~~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      .+..-|.|+|+.++|||+|+|+|++..  |....   ..|.|+-.....+..  .++..+.+.++||+|..
T Consensus         6 ~~~~~i~v~G~~~~GKSsli~~l~~~~--~~~~~---~~~~~~~~~~~~~~~--~~~~~~~~~l~Dt~G~~   69 (182)
T 1ky3_A            6 KNILKVIILGDSGVGKTSLMHRYVNDK--YSQQY---KATIGADFLTKEVTV--DGDKVATMQVWDTAGQE   69 (182)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHSC--CCTTC------CCCSCEEEEECC--SSSCCEEEEEECCC---
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhCc--CCccc---CCccceEEEEEEEEE--cCCcEEEEEEEECCCCh
Confidence            345568999999999999999999865  32211   123332222111111  12445789999999954

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=96.71  E-value=0.0012  Score=62.99  Aligned_cols=61  Identities=28%  Similarity=0.370  Sum_probs=39.7

Q ss_pred             EEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        71 v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      ..-|.|+|+.++|||+|+|.|++..  |....   ..|.|+-.....+.   .+|..+.+.|+||+|..
T Consensus        10 ~~ki~v~G~~~~GKSsli~~l~~~~--~~~~~---~~~~~~~~~~~~~~---~~~~~~~~~l~Dt~G~~   70 (186)
T 2bme_A           10 LFKFLVIGNAGTGKSCLLHQFIEKK--FKDDS---NHTIGVEFGSKIIN---VGGKYVKLQIWDTAGQE   70 (186)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSS--CCTTC---CCCSEEEEEEEEEE---ETTEEEEEEEEEECCSG
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCC--CCCCC---CCccceEEEEEEEE---ECCEEEEEEEEeCCCcH
Confidence            4458899999999999999999765  43221   22334322222221   13455789999999954

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=96.70  E-value=0.0015  Score=62.85  Aligned_cols=60  Identities=20%  Similarity=0.219  Sum_probs=38.5

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698           73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA  140 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~  140 (736)
                      =|.|+|+.++|||+|+|+|++..  |....   ..|.|+-.....+.   .++..+.+.|+||+|...
T Consensus        24 ki~vvG~~~~GKSsli~~l~~~~--~~~~~---~~t~~~~~~~~~~~---~~~~~~~~~l~Dt~G~~~   83 (189)
T 2gf9_A           24 KLLLIGNSSVGKTSFLFRYADDS--FTPAF---VSTVGIDFKVKTVY---RHDKRIKLQIWDTAGQER   83 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC--CCCSC---CCCCCCEEEEEEEE---ETTEEEEEEEEECCSCCS
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC--CCCCc---CCceeEEEEEEEEE---ECCeEEEEEEEeCCCcHH
Confidence            48999999999999999999865  43211   12333322211111   134567899999999643

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=96.70  E-value=0.0011  Score=72.78  Aligned_cols=64  Identities=17%  Similarity=0.206  Sum_probs=35.6

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccC---CCCCccceEEeecccccccc------C------CC-CceEEEEeecCC
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVAS---THRPCTKGLWLWSAPLKRTA------L------DG-TEYNLLLLDSEG  137 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~---~~~~~T~Giw~w~~p~~~~~------~------~g-~~~~v~llDteG  137 (736)
                      |+|+|.+++|||+|+|.|.|..  +.+++   ++...+.|+..+..+.+...      |      ++ ..+.+.|+||+|
T Consensus         3 I~ivG~pnvGKSTL~n~L~~~~--~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG   80 (397)
T 1wxq_A            3 IGVVGKPNVGKSTFFSAATLVD--VEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (397)
T ss_dssp             EEEEECTTSSHHHHHHHHHC----------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             EEEECCCCCCHHHHHHHHHCCC--CcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence            7899999999999999999876  33332   23334678865542221100      0      12 136799999999


Q ss_pred             Cc
Q 004698          138 ID  139 (736)
Q Consensus       138 ~~  139 (736)
                      +.
T Consensus        81 ~~   82 (397)
T 1wxq_A           81 LV   82 (397)
T ss_dssp             --
T ss_pred             cc
Confidence            84

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=96.69  E-value=0.0012  Score=64.68  Aligned_cols=62  Identities=21%  Similarity=0.288  Sum_probs=39.3

Q ss_pred             EEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698           71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA  140 (736)
Q Consensus        71 v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~  140 (736)
                      ..=|.|+|+.++|||+|+|+|++..  |....   ..|.|+-.....+.   .+|..+.+.|+||+|...
T Consensus         8 ~~ki~v~G~~~~GKSsli~~l~~~~--~~~~~---~~t~~~~~~~~~~~---~~~~~~~~~l~Dt~G~~~   69 (206)
T 2bcg_Y            8 LFKLLLIGNSGVGKSCLLLRFSDDT--YTNDY---ISTIGVDFKIKTVE---LDGKTVKLQIWDTAGQER   69 (206)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCC--CCTTC---CCSSCCCEEEEEEE---ETTEEEEEEEECCTTTTT
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCC--CCCCC---CCcccceeEEEEEE---ECCEEEEEEEEeCCChHH
Confidence            3458999999999999999999865  43211   12323211111111   135567899999999653

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=96.69  E-value=0.0021  Score=61.13  Aligned_cols=59  Identities=27%  Similarity=0.285  Sum_probs=37.8

Q ss_pred             EEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      .=|.|+|+.++|||+|+|.|++..  |..  .. +.|.|.-... .+   ..++..+.+.|+||+|..
T Consensus        19 ~ki~v~G~~~~GKSsli~~l~~~~--~~~--~~-~~t~~~~~~~-~~---~~~~~~~~~~l~Dt~G~~   77 (187)
T 2a9k_A           19 HKVIMVGSGGVGKSALTLQFMYDE--FVE--DY-EPTKADSYRK-KV---VLDGEEVQIDILDTAGQE   77 (187)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC--CCC--SC-CTTCCEEEEE-EE---EETTEEEEEEEEECCCTT
T ss_pred             eEEEEECCCCCCHHHHHHHHhhCC--CCC--cC-CCccceEEEE-EE---EECCEEEEEEEEECCCCc
Confidence            348899999999999999999765  421  11 1233322211 11   123556789999999954

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=96.69  E-value=0.0015  Score=63.37  Aligned_cols=60  Identities=20%  Similarity=0.231  Sum_probs=39.6

Q ss_pred             EEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      .=|+|+|+.++|||+|+|.|++..  |...   ...|.|+-.....+..   ++..+.+.|+||+|..
T Consensus        24 ~ki~vvG~~~~GKSsli~~l~~~~--~~~~---~~~~~~~~~~~~~~~~---~~~~~~~~i~Dt~G~~   83 (192)
T 2fg5_A           24 LKVCLLGDTGVGKSSIVCRFVQDH--FDHN---ISPTIGASFMTKTVPC---GNELHKFLIWDTAGQE   83 (192)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHCC--CCTT---CCCCSSEEEEEEEEEC---SSSEEEEEEEEECCSG
T ss_pred             eEEEEECcCCCCHHHHHHHHhcCC--CCCC---cCCCcceeEEEEEEEe---CCEEEEEEEEcCCCch
Confidence            458999999999999999999875  4211   1224443332222211   3456789999999954

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=96.69  E-value=0.0012  Score=63.73  Aligned_cols=59  Identities=20%  Similarity=0.361  Sum_probs=38.1

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      -|.|+|..++|||+|+|+|++..  |....   ..|.|+-.....+.   .++..+.+.|+||+|..
T Consensus        22 ki~v~G~~~~GKSsli~~l~~~~--~~~~~---~~t~~~~~~~~~~~---~~~~~~~~~l~Dt~G~~   80 (189)
T 1z06_A           22 KIIVIGDSNVGKTCLTYRFCAGR--FPDRT---EATIGVDFRERAVD---IDGERIKIQLWDTAGQE   80 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSS--CCSSC---CCCCSCCEEEEEEE---ETTEEEEEEEEECCCSH
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC--CCCCC---CCCcceEEEEEEEE---ECCEEEEEEEEECCCch
Confidence            48999999999999999999764  32211   22333322222121   13556789999999964

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=96.67  E-value=0.0019  Score=62.14  Aligned_cols=57  Identities=28%  Similarity=0.330  Sum_probs=35.9

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      |.|+|..++|||+|+|.|++..  |.-  ...+ |.|.-... .+   ..++..+.+.|+||+|..
T Consensus        24 i~vvG~~~~GKSsli~~l~~~~--~~~--~~~~-t~~~~~~~-~~---~~~~~~~~~~l~Dt~G~~   80 (190)
T 3con_A           24 LVVVGAGGVGKSALTIQLIQNH--FVD--EYDP-TIEDSYRK-QV---VIDGETCLLDILDTAGQE   80 (190)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSS--CCS--CCCT-TCCEEEEE-EE---EETTEEEEEEEEECCC--
T ss_pred             EEEECcCCCCHHHHHHHHHcCC--Ccc--ccCC-ccceEEEE-EE---EECCEEEEEEEEECCChH
Confidence            7899999999999999999764  321  1112 22322211 11   123556789999999964

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=96.66  E-value=0.0013  Score=62.54  Aligned_cols=61  Identities=18%  Similarity=0.280  Sum_probs=38.1

Q ss_pred             EEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        71 v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      ..=|.|+|+.++|||+|+|+|++..  |....   ..|.|+-.....+.   .++..+.+.|+||+|..
T Consensus        12 ~~ki~v~G~~~~GKSsli~~l~~~~--~~~~~---~~~~~~~~~~~~~~---~~~~~~~~~i~Dt~G~~   72 (181)
T 2efe_B           12 NAKLVLLGDVGAGKSSLVLRFVKDQ--FVEFQ---ESTIGAAFFSQTLA---VNDATVKFEIWDTAGQE   72 (181)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHHCC--CTTTS---CCCSCCSEEEEEEE---ETTEEEEEEEEECCCSG
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcCC--CCCcC---CCCceeEEEEEEEE---ECCEEEEEEEEeCCCCh
Confidence            3458899999999999999999765  32211   12333211111111   12445789999999954

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=96.66  E-value=0.0013  Score=63.80  Aligned_cols=58  Identities=22%  Similarity=0.362  Sum_probs=35.6

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      |.|+|..++|||+|+|+|++..  |....   ..|.|+-.....+.   .+|..+.+.|+||+|..
T Consensus        29 i~vvG~~~~GKSsLi~~l~~~~--~~~~~---~~t~~~~~~~~~~~---~~~~~~~l~l~Dt~G~~   86 (192)
T 2il1_A           29 VIIIGSRGVGKTSLMERFTDDT--FCEAC---KSTVGVDFKIKTVE---LRGKKIRLQIWDTAGQE   86 (192)
T ss_dssp             EEEECSTTSSHHHHHHHHCC-------------CCTTEEEEEEEEE---ETTEEEEEEEEEECCSG
T ss_pred             EEEECCCCCCHHHHHHHHhcCC--CCcCC---CCccceeEEEEEEE---ECCeEEEEEEEeCCCcH
Confidence            7899999999999999999875  43211   22334333222221   13556789999999953

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=96.66  E-value=0.00066  Score=73.30  Aligned_cols=25  Identities=20%  Similarity=0.122  Sum_probs=23.0

Q ss_pred             CCEEEEEeeCCCCCChhHHHHHHhC
Q 004698           69 EPIGVVSVCGRARQGKSFILNQLLG   93 (736)
Q Consensus        69 ~~v~vVsv~G~~rtGKS~LlN~l~~   93 (736)
                      .+..+|+|+|++++|||+|+|.|+|
T Consensus        72 ~~~~~v~lvG~pgaGKSTLln~L~~   96 (349)
T 2www_A           72 PLAFRVGLSGPPGAGKSTFIEYFGK   96 (349)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             cCceEEEEEcCCCCCHHHHHHHHHH
Confidence            4588999999999999999999986

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=96.66  E-value=0.0044  Score=66.86  Aligned_cols=62  Identities=23%  Similarity=0.253  Sum_probs=42.5

Q ss_pred             CCEEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698           69 EPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA  140 (736)
Q Consensus        69 ~~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~  140 (736)
                      .+...|+|+|+.++|||+|+|.|.|..  +.+++. ...|.++-+...+.       ....+.++||+|+..
T Consensus       165 ~~~~~v~lvG~~gvGKSTLin~L~~~~--~~~~~~-~~~t~~~~~~~~~~-------~~~~~~l~Dt~G~~~  226 (357)
T 2e87_A          165 LEIPTVVIAGHPNVGKSTLLKALTTAK--PEIASY-PFTTRGINVGQFED-------GYFRYQIIDTPGLLD  226 (357)
T ss_dssp             SSSCEEEEECSTTSSHHHHHHHHCSSC--CEEECC-TTCSSCEEEEEEEE-------TTEEEEEEECTTTSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC--CccCCC-CCeeeceeEEEEEe-------cCceEEEEeCCCccc
Confidence            355689999999999999999999876  444332 23455554332221       135789999999854

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=96.64  E-value=0.0018  Score=61.17  Aligned_cols=57  Identities=21%  Similarity=0.344  Sum_probs=36.4

Q ss_pred             EEEEeeCCCCCChhHHHHHHhCCCCcccccCCC---CCccceEEeeccccccccCCCCceEEEEeecCCCccc
Q 004698           72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTH---RPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAY  141 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~---~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~  141 (736)
                      ..|+|+|+.++|||+|+|+|.|..  |.+++..   .....|...|         ++  ..+.++||+|....
T Consensus         4 ~~v~lvG~~gvGKStL~~~l~~~~--~~~~~~~~~t~~~~~~~~~~---------~~--~~l~i~Dt~G~~~~   63 (165)
T 2wji_A            4 YEIALIGNPNVGKSTIFNALTGEN--VYIGNWPGVTVEKKEGEFEY---------NG--EKFKVVDLPGVYSL   63 (165)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHCCS--SSCC-----CCCCCEEEEEE---------TT--EEEEEEECCCCSCS
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCC--eeccCCCCcceeeeEEEEEE---------CC--cEEEEEECCCcccC
Confidence            468999999999999999999865  4333210   0111222211         12  56889999997543

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=96.64  E-value=0.0022  Score=62.63  Aligned_cols=61  Identities=23%  Similarity=0.241  Sum_probs=38.8

Q ss_pred             EEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698           71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA  140 (736)
Q Consensus        71 v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~  140 (736)
                      ..-|.|+|..++|||+|+|+|++..  |..  .. ..|.|.-.... +   ..++..+.+.|+||+|...
T Consensus        24 ~~ki~vvG~~~~GKSsli~~l~~~~--~~~--~~-~~t~~~~~~~~-~---~~~~~~~~~~l~Dt~G~~~   84 (201)
T 3oes_A           24 YRKVVILGYRCVGKTSLAHQFVEGE--FSE--GY-DPTVENTYSKI-V---TLGKDEFHLHLVDTAGQDE   84 (201)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSC--CCS--CC-CCCSEEEEEEE-E---C----CEEEEEEEECCCCT
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCC--CCC--CC-CCccceEEEEE-E---EECCEEEEEEEEECCCccc
Confidence            3458899999999999999999875  432  11 23444333211 1   1235568899999999653

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=96.64  E-value=0.0014  Score=71.29  Aligned_cols=57  Identities=30%  Similarity=0.408  Sum_probs=41.0

Q ss_pred             CEEEEEeeCCCCCChhHHHHHHhCCCCcccccC---CCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVAS---THRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        70 ~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~---~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      -++-|+|+|.+.+|||+|+|.|.|...  .+++   ++..+..|+.-|.         |  ..+.|+||+|+-
T Consensus        71 g~a~V~ivG~PNvGKSTL~n~Lt~~~~--~v~~~pftT~~~~~g~~~~~---------~--~~i~l~D~pGl~  130 (376)
T 4a9a_A           71 GVASVGFVGFPSVGKSTLLSKLTGTES--EAAEYEFTTLVTVPGVIRYK---------G--AKIQMLDLPGII  130 (376)
T ss_dssp             SSEEEEEECCCCHHHHHHHHHHHSBCC--CGGGTCSSCCCEEEEEEEET---------T--EEEEEEECGGGC
T ss_pred             CCCeEEEECCCCCCHHHHHHHHhCCCC--cccCCCCceeeeeeEEEEeC---------C--cEEEEEeCCCcc
Confidence            356799999999999999999998652  2222   2233356776552         2  568999999983

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=96.63  E-value=0.008  Score=57.58  Aligned_cols=68  Identities=13%  Similarity=0.030  Sum_probs=44.3

Q ss_pred             CEEEEEeeCCCCCChhHHHHHHhCCCCccccc-----CCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVA-----STHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        70 ~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~-----~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      +..=|.|+|+.++|||+|+|.|.|....-..+     .+....|.|+-.+...+.  ..++..+.+.++||+|..
T Consensus        13 ~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~~~~~i~Dt~G~~   85 (198)
T 3t1o_A           13 INFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIG--EVKGFKTRFHLYTVPGQV   85 (198)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCC--CSSSCEEEEEEEECCSCC
T ss_pred             cccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccc--cccCCceEEEEEeCCChH
Confidence            34458899999999999999988753211000     011234777766654331  234667889999999964

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=96.63  E-value=0.0016  Score=62.84  Aligned_cols=63  Identities=21%  Similarity=0.301  Sum_probs=40.5

Q ss_pred             CCEEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           69 EPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        69 ~~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      .+..=|.|+|+.++|||+|+|+|++..  |....   ..|.|+-.....+.   .+|..+.+.|+||+|..
T Consensus        14 ~~~~ki~v~G~~~~GKSsli~~l~~~~--~~~~~---~~~~~~~~~~~~~~---~~~~~~~~~i~Dt~G~~   76 (196)
T 3tkl_A           14 DYLFKLLLIGDSGVGKSCLLLRFADDT--YTESY---ISTIGVDFKIRTIE---LDGKTIKLQIWDTAGQE   76 (196)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSC--CCSCC---CCCSSEEEEEEEEE---ETTEEEEEEEEEECCSG
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHcCC--CCCCC---CCcccceEEEEEEE---ECCEEEEEEEEECCCcH
Confidence            345569999999999999999999765  43221   12333222222221   13556789999999953

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=96.62  E-value=0.0017  Score=62.19  Aligned_cols=54  Identities=20%  Similarity=0.295  Sum_probs=35.5

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698           73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA  140 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~  140 (736)
                      =|.|+|+.++|||+|+|+|++..  |..+... ..|..+..+..        +   .+.++||+|++.
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~~--~~~~~~~-~~t~~~~~~~~--------~---~~~l~Dt~G~~~   56 (190)
T 2cxx_A            3 TIIFAGRSNVGKSTLIYRLTGKK--VRRGKRP-GVTRKIIEIEW--------K---NHKIIDMPGFGF   56 (190)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCC--CSSSSST-TCTTSCEEEEE--------T---TEEEEECCCBSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCcC--CccCCCC-CccceeEEEec--------C---CEEEEECCCccc
Confidence            37899999999999999999876  6554332 12222211110        1   367899999753

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=96.62  E-value=0.0011  Score=71.63  Aligned_cols=26  Identities=31%  Similarity=0.579  Sum_probs=23.0

Q ss_pred             CEEEEEeeCCCCCChhHHHHHHhCCC
Q 004698           70 PIGVVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        70 ~v~vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      +..-|+|+|.+++|||+|+|.|+|..
T Consensus        30 ~~~~I~vvG~~~~GKSSLln~L~g~~   55 (353)
T 2x2e_A           30 DLPQIAVVGGQSAGKSSVLENFVGRD   55 (353)
T ss_dssp             CCCEEEEECBTTSSHHHHHHTTTTSC
T ss_pred             CCCeEEEECCCCCCHHHHHHHHhCCC
Confidence            34479999999999999999999975

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=96.61  E-value=0.0027  Score=60.71  Aligned_cols=64  Identities=22%  Similarity=0.251  Sum_probs=38.1

Q ss_pred             EEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEee-cccccc------ccCCCCceEEEEeecCCCc
Q 004698           71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLW-SAPLKR------TALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        71 v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w-~~p~~~------~~~~g~~~~v~llDteG~~  139 (736)
                      ..=|.|+|+.++|||+|+|.|++..  |...   ...|.|+-.. ...+..      ....+..+.+.|+||+|..
T Consensus        11 ~~ki~v~G~~~~GKSsli~~l~~~~--~~~~---~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~   81 (195)
T 3bc1_A           11 LIKFLALGDSGVGKTSVLYQYTDGK--FNSK---FITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLE   81 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSC--CCCS---CCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSG
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCC--CCcC---cccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcH
Confidence            3458899999999999999999765  3221   1223333221 100100      0011225789999999963

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.60  E-value=0.0015  Score=64.35  Aligned_cols=60  Identities=18%  Similarity=0.317  Sum_probs=40.2

Q ss_pred             EEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      .-|+|+|+.++|||+|+|+|++..  |....   ..|.|+-.....+.   .+|..+.+.|+||+|..
T Consensus        27 ~ki~lvG~~~vGKSsLi~~l~~~~--~~~~~---~~t~~~~~~~~~~~---~~~~~~~l~l~Dt~G~~   86 (201)
T 2ew1_A           27 FKIVLIGNAGVGKTCLVRRFTQGL--FPPGQ---GATIGVDFMIKTVE---INGEKVKLQIWDTAGQE   86 (201)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSS--CCTTC---CCCCSEEEEEEEEE---ETTEEEEEEEEEECCSG
T ss_pred             eEEEEECcCCCCHHHHHHHHHhCC--CCCCC---CCccceeEEEEEEE---ECCEEEEEEEEECCCcH
Confidence            348899999999999999999765  43322   23444433222221   24556789999999953

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=96.59  E-value=0.0021  Score=62.51  Aligned_cols=62  Identities=23%  Similarity=0.376  Sum_probs=40.8

Q ss_pred             CEEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        70 ~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      ....|+|+|+.++|||+|+|.|.|..  |....   ..|.|+-.....+.   .+|..+.+.++||.|..
T Consensus        28 ~~~kv~lvG~~g~GKSTLl~~l~~~~--~~~~~---~~t~~~~~~~~~i~---~~g~~~~~~i~Dt~g~~   89 (191)
T 1oix_A           28 YLFKVVLIGDSGVGKSNLLSRFTRNE--FNLES---KSTIGVEFATRSIQ---VDGKTIKAQIWDTAGLE   89 (191)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHSC--CCCSC---CCCCSEEEEEEEEE---ETTEEEEEEEEEECSCC
T ss_pred             cceEEEEECcCCCCHHHHHHHHhcCC--CCCCC---CCccceEEEEEEEE---ECCEEEEEEEEECCCCc
Confidence            34579999999999999999999875  43211   22434333222221   14556777789999964

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=96.57  E-value=0.04  Score=67.76  Aligned_cols=37  Identities=19%  Similarity=0.238  Sum_probs=22.9

Q ss_pred             eeeCHHHHHHhhccCCCEEEEEeeCCCCCChhHHHHHH
Q 004698           54 FRMDPEAVAALQLVKEPIGVVSVCGRARQGKSFILNQL   91 (736)
Q Consensus        54 l~l~~eAl~~L~~i~~~v~vVsv~G~~rtGKS~LlN~l   91 (736)
                      |.|-+.|-..+..-..+=+ |-|.|..|+|||.-...+
T Consensus       140 faiA~~Ay~~m~~~~~~Qs-IiisGESGAGKTe~~K~i  176 (1080)
T 2dfs_A          140 FAVAEEAYKQMARDERNQS-IIVSGESGAGKTVSAKYA  176 (1080)
T ss_dssp             HHHHHHHHHHHHHHTCCEE-EEEECSTTSSHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCcE-EEEcCCCCCCccchHHHH
Confidence            4455555555554444444 557899999999644443

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=96.56  E-value=0.0019  Score=63.04  Aligned_cols=61  Identities=23%  Similarity=0.373  Sum_probs=39.0

Q ss_pred             EEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        71 v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      ..-|+|+|+.++|||+|+|.|.|..  |....   ..|.|+-.....+.   .+|..+.+.+.||.|..
T Consensus         5 ~~kv~lvG~~g~GKSTLl~~l~~~~--~~~~~---~~t~~~~~~~~~i~---~~g~~~~~~i~Dt~g~~   65 (199)
T 2f9l_A            5 LFKVVLIGDSGVGKSNLLSRFTRNE--FNLES---KSTIGVEFATRSIQ---VDGKTIKAQIWDTAGQE   65 (199)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHSC--CCC------CCCSCEEEEEEEE---ETTEEEEEEEEECSSGG
T ss_pred             eEEEEEECcCCCCHHHHHHHHhcCC--CCCCC---CCccceeEEEEEEE---ECCEEEEEEEEECCCch
Confidence            4568999999999999999999875  43211   12333222211111   14556778899999964

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=96.52  E-value=0.7  Score=62.38  Aligned_cols=30  Identities=23%  Similarity=0.427  Sum_probs=21.1

Q ss_pred             hccCCCEEEEEeeCCCCCChhHHHHHHhCCCCc
Q 004698           65 QLVKEPIGVVSVCGRARQGKSFILNQLLGRSSG   97 (736)
Q Consensus        65 ~~i~~~v~vVsv~G~~rtGKS~LlN~l~~~~~g   97 (736)
                      ...+.||   -++||+|||||.++...+....+
T Consensus      1301 l~~~~pv---LL~GptGtGKT~li~~~L~~l~~ 1330 (3245)
T 3vkg_A         1301 LSEHRPL---ILCGPPGSGKTMTLTSTLRAFPD 1330 (3245)
T ss_dssp             HHTTCCC---EEESSTTSSHHHHHHHHGGGCTT
T ss_pred             HHCCCcE---EEECCCCCCHHHHHHHHHHhCCC
Confidence            3446775   46899999999888776654333

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=96.52  E-value=0.0023  Score=59.77  Aligned_cols=58  Identities=22%  Similarity=0.180  Sum_probs=32.3

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698           73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA  140 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~  140 (736)
                      =|.|+|+.++|||+|+|+|.|..  +....    .|.|.-... .+   ..++..+.+.++||+|...
T Consensus         4 ki~~vG~~~~GKSsli~~l~~~~--~~~~~----~~~~~~~~~-~~---~~~~~~~~~~i~D~~g~~~   61 (166)
T 3q72_A            4 KVLLLGAPGVGKSALARIFGGVE--DGPEA----EAAGHTYDR-SI---VVDGEEASLMVYDIWEQDG   61 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHCCC----------------CEEEE-EE---EETTEEEEEEEEECC----
T ss_pred             EEEEECCCCCCHHHHHHHHcCcc--ccCCC----CccccceEE-EE---EECCEEEEEEEEECCCCcc
Confidence            37899999999999999999765  22111    122221110 01   1245668899999999653

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=96.52  E-value=0.003  Score=59.19  Aligned_cols=55  Identities=20%  Similarity=0.184  Sum_probs=37.2

Q ss_pred             EEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      .-|.|+|+.++|||+|+|+|++..  |.   .. ..|.|+-.....+     +  .+.+.++||+|..
T Consensus         8 ~~i~v~G~~~~GKssl~~~l~~~~--~~---~~-~~t~~~~~~~~~~-----~--~~~~~~~Dt~G~~   62 (171)
T 1upt_A            8 MRILILGLDGAGKTTILYRLQVGE--VV---TT-IPTIGFNVETVTY-----K--NLKFQVWDLGGLT   62 (171)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSS--CC---CC-CCCSSEEEEEEEE-----T--TEEEEEEEECCCG
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCC--CC---Cc-CCcCccceEEEEE-----C--CEEEEEEECCCCh
Confidence            348899999999999999998765  42   11 2244543322211     1  3678999999964

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=96.51  E-value=0.001  Score=64.78  Aligned_cols=62  Identities=32%  Similarity=0.432  Sum_probs=18.5

Q ss_pred             EEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCC--ceEEEEeecCCCc
Q 004698           72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGT--EYNLLLLDSEGID  139 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~--~~~v~llDteG~~  139 (736)
                      .-|.|+|+.++|||+|+|.|++....|.-   ....|.|+-.....+..   +|.  .+.+.|+||+|..
T Consensus        21 ~~i~v~G~~~~GKssli~~l~~~~~~~~~---~~~~t~~~~~~~~~~~~---~~~~~~~~~~l~Dt~G~~   84 (208)
T 2yc2_C           21 CKVAVVGEATVGKSALISMFTSKGSKFLK---DYAMTSGVEVVVAPVTI---PDTTVSVELFLLDTAGSD   84 (208)
T ss_dssp             EEEEEC-------------------------------------CEEEEC---TTSSEEEEEEEEETTTTH
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCcccC---CCCCccceEEEEEEEEE---CCcccEEEEEEEECCCcH
Confidence            45899999999999999999987322431   12345553333222221   344  6789999999964

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=96.50  E-value=0.0018  Score=63.05  Aligned_cols=60  Identities=28%  Similarity=0.319  Sum_probs=36.2

Q ss_pred             EEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      .-|.|+|+.++|||+|+|+|++..  |...   ...|.|+-.....+.   .++..+.+.|+||+|..
T Consensus        29 ~ki~v~G~~~~GKSsli~~l~~~~--~~~~---~~~t~~~~~~~~~~~---~~~~~~~l~i~Dt~G~~   88 (199)
T 2p5s_A           29 YKIVLAGDAAVGKSSFLMRLCKNE--FREN---ISATLGVDFQMKTLI---VDGERTVLQLWDTAGQE   88 (199)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHCC--CC-------------CEEEEEE---ETTEEEEEEEEECTTCT
T ss_pred             eEEEEECcCCCCHHHHHHHHHhCC--CCcc---CCCCccceeEEEEEE---ECCEEEEEEEEECCCCc
Confidence            458999999999999999999765  4211   112334322222221   13556789999999954

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=96.49  E-value=0.0034  Score=67.38  Aligned_cols=34  Identities=21%  Similarity=0.142  Sum_probs=25.8

Q ss_pred             HHHHhhccCCCEEEEEeeCCCCCChhHHHHHHhC
Q 004698           60 AVAALQLVKEPIGVVSVCGRARQGKSFILNQLLG   93 (736)
Q Consensus        60 Al~~L~~i~~~v~vVsv~G~~rtGKS~LlN~l~~   93 (736)
                      +++-+...-.+-.+|+|+|+.++|||||+|.|.|
T Consensus        44 ~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g   77 (337)
T 2qm8_A           44 LIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGS   77 (337)
T ss_dssp             HHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHH
T ss_pred             HHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3343333235667899999999999999999985

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=96.48  E-value=0.0034  Score=59.65  Aligned_cols=59  Identities=29%  Similarity=0.284  Sum_probs=37.4

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698           73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA  140 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~  140 (736)
                      =|.|+|+.++|||+|+|+|.+..  |.-  ...+ |.|... ...+   ..+|..+.+.++||+|...
T Consensus         7 ~i~~~G~~~~GKssl~~~l~~~~--~~~--~~~~-t~~~~~-~~~~---~~~~~~~~~~i~Dt~G~~~   65 (186)
T 1mh1_A            7 KCVVVGDGAVGKTCLLISYTTNA--FPG--EYIP-TVFDNY-SANV---MVDGKPVNLGLWDTAGQED   65 (186)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS--CCS--SCCC-CSCCEE-EEEE---EETTEEEEEEEECCCCSGG
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC--CCC--CcCC-ccccee-EEEE---EECCEEEEEEEEECCCCHh
Confidence            48899999999999999999654  321  1112 222111 1111   1245667888999999753

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=96.47  E-value=0.0052  Score=58.50  Aligned_cols=62  Identities=23%  Similarity=0.141  Sum_probs=39.2

Q ss_pred             CCEEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           69 EPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        69 ~~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      .+..-|.|+|+.++|||+|+|+|++..  |...  . ..|.|.-.... +   ..++..+.+-++||+|..
T Consensus        16 ~~~~ki~v~G~~~~GKSsl~~~l~~~~--~~~~--~-~~t~~~~~~~~-~---~~~~~~~~l~i~Dt~G~~   77 (183)
T 3kkq_A           16 LPTYKLVVVGDGGVGKSALTIQFFQKI--FVDD--Y-DPTIEDSYLKH-T---EIDNQWAILDVLDTAGQE   77 (183)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHSC--CCSC--C-CTTCCEEEEEE-E---EETTEEEEEEEEECCSCG
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCC--CCCC--C-CCCccceeEEE-E---EeCCcEEEEEEEECCCch
Confidence            455568999999999999999999764  3221  1 12333222111 1   123555677789999954

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=96.47  E-value=0.0036  Score=60.78  Aligned_cols=60  Identities=22%  Similarity=0.231  Sum_probs=36.1

Q ss_pred             EEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698           72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA  140 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~  140 (736)
                      .-|.|+|..++|||+|+|.|++..  |..  ...+ |.|.-.. ..+   ..+|..+.+.|+||+|...
T Consensus        21 ~ki~~~G~~~~GKssl~~~l~~~~--~~~--~~~~-t~~~~~~-~~~---~~~~~~~~~~i~Dt~G~~~   80 (201)
T 2q3h_A           21 VKCVLVGDGAVGKTSLVVSYTTNG--YPT--EYIP-TAFDNFS-AVV---SVDGRPVRLQLCDTAGQDE   80 (201)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHC------------C-CSSEEEE-EEE---EETTEEEEEEEEECCCSTT
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCC--CCC--CCCC-cccceeE-EEE---EECCEEEEEEEEECCCCHH
Confidence            448899999999999999999875  432  1112 3332221 111   1245567788999999754

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=96.46  E-value=0.0016  Score=63.74  Aligned_cols=59  Identities=29%  Similarity=0.400  Sum_probs=33.7

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      =|.|+|+.++|||+|+|+|++..  |....   ..|.|+-.....+.   .+|..+.+.|+||+|..
T Consensus        27 ki~v~G~~~~GKSsLi~~l~~~~--~~~~~---~~t~~~~~~~~~~~---~~~~~~~l~l~Dt~G~~   85 (200)
T 2o52_A           27 KFLVIGSAGTGKSCLLHQFIENK--FKQDS---NHTIGVEFGSRVVN---VGGKTVKLQIWDTAGQE   85 (200)
T ss_dssp             EEEEEESTTSSHHHHHHHHHC-----------------CCEEEEEEE---ETTEEEEEEEECCTTHH
T ss_pred             EEEEECcCCCCHHHHHHHHHhCC--CCccC---CCcccceeEEEEEE---ECCeeeEEEEEcCCCcH
Confidence            48899999999999999999865  43221   12333211111111   13455789999999964

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=96.46  E-value=0.0038  Score=69.06  Aligned_cols=64  Identities=23%  Similarity=0.308  Sum_probs=34.6

Q ss_pred             EEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcccC
Q 004698           71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYD  142 (736)
Q Consensus        71 v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~~  142 (736)
                      ..-|+|+|..++|||+|+|+|++..  |...+.....|.....  .++..   .+ ...+.|+||+|+++..
T Consensus        34 ~~kI~IvG~~~vGKSTLin~L~~~~--~~~~~~~~gtT~d~~~--~~~~~---~~-~~~l~liDTpG~~d~~   97 (423)
T 3qq5_A           34 RRYIVVAGRRNVGKSSFMNALVGQN--VSIVSDYAGTTTDPVY--KSMEL---HP-IGPVTLVDTPGLDDVG   97 (423)
T ss_dssp             CEEEEEECSCSTTTTTTTTSSCC---------------CCCCE--EEEEE---TT-TEEEEEEECSSTTCCC
T ss_pred             CEEEEEECCCCCCHHHHHHHHHcCC--CCccCCCCCeeeeeEE--EEEEE---CC-CCeEEEEECcCCCccc
Confidence            3458999999999999999999876  4322221222221111  11111   11 1368899999997554

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.46  E-value=0.006  Score=59.06  Aligned_cols=59  Identities=22%  Similarity=0.261  Sum_probs=38.7

Q ss_pred             EEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      .=|.|+|..++|||+|+|+|++..  |...   ...|.|.-.. ..+   ..++..+.+.|+||+|..
T Consensus        29 ~ki~v~G~~~vGKSsli~~l~~~~--~~~~---~~~t~~~~~~-~~~---~~~~~~~~~~l~Dt~G~~   87 (196)
T 2atv_A           29 VKLAIFGRAGVGKSALVVRFLTKR--FIWE---YDPTLESTYR-HQA---TIDDEVVSMEILDTAGQE   87 (196)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSC--CCSC---CCTTCCEEEE-EEE---EETTEEEEEEEEECCCCC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCC--CCcc---cCCCCCceEE-EEE---EECCEEEEEEEEECCCCC
Confidence            348899999999999999999865  4221   1223333221 111   124556789999999975

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=96.46  E-value=0.0059  Score=69.90  Aligned_cols=26  Identities=27%  Similarity=0.353  Sum_probs=23.5

Q ss_pred             CEEEEEeeCCCCCChhHHHHHHhCCC
Q 004698           70 PIGVVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        70 ~v~vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      ....|+|+|.+++|||+|+|.|+|..
T Consensus        64 ~~~~V~vvG~~n~GKSTLIN~Llg~~   89 (550)
T 2qpt_A           64 GKPMVLVAGQYSTGKTSFIQYLLEQE   89 (550)
T ss_dssp             SCCEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCc
Confidence            45689999999999999999999986

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=96.46  E-value=0.0017  Score=67.57  Aligned_cols=26  Identities=31%  Similarity=0.579  Sum_probs=23.1

Q ss_pred             CEEEEEeeCCCCCChhHHHHHHhCCC
Q 004698           70 PIGVVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        70 ~v~vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      +..-|+|+|.+++|||+|+|.|+|..
T Consensus        25 ~~~~i~vvG~~~~GKSSLln~l~g~~   50 (299)
T 2aka_B           25 DLPQIAVVGGQSAGKSSVLENFVGRD   50 (299)
T ss_dssp             CCCEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred             CCCeEEEEeCCCCCHHHHHHHHHCCC
Confidence            34479999999999999999999876

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=96.43  E-value=0.0082  Score=58.63  Aligned_cols=25  Identities=36%  Similarity=0.369  Sum_probs=21.8

Q ss_pred             EEEEEeeCCCCCChhHHHHHHhCCC
Q 004698           71 IGVVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        71 v~vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      -..|+|+|+.++|||+|+|.|+|..
T Consensus        26 ~~~v~lvG~~g~GKSTLl~~l~g~~   50 (210)
T 1pui_A           26 GIEVAFAGRSNAGKSSALNTLTNQK   50 (210)
T ss_dssp             SEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCC
Confidence            3469999999999999999999875

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=96.43  E-value=0.0038  Score=59.76  Aligned_cols=60  Identities=18%  Similarity=0.201  Sum_probs=37.6

Q ss_pred             EEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCccc
Q 004698           72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAY  141 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~  141 (736)
                      ..|+|+|+.++|||+|+|.|.|..  |.++... ..|.......  +.   .+  .+.+.++||+|....
T Consensus         8 ~~i~lvG~~gvGKStL~~~l~~~~--~~~~~~~-~~t~~~~~~~--~~---~~--~~~~~l~Dt~G~~~~   67 (188)
T 2wjg_A            8 YEIALIGNPNVGKSTIFNALTGEN--VYIGNWP-GVTVEKKEGE--FE---YN--GEKFKVVDLPGVYSL   67 (188)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTTC--EEEEECT-TSCCEEEEEE--EE---ET--TEEEEEEECCCCSCC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC--ccccCCC-CeeccceEEE--EE---eC--CcEEEEEECCCcCcc
Confidence            568999999999999999999865  4443221 1121111111  10   01  267889999997543

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=96.40  E-value=0.0033  Score=59.42  Aligned_cols=62  Identities=18%  Similarity=0.329  Sum_probs=37.3

Q ss_pred             CEEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCccc
Q 004698           70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAY  141 (736)
Q Consensus        70 ~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~  141 (736)
                      +...|.|+|+.++|||+|+|+|++..  |..... ...|..+-.+...     .+|  ..+.++||+|....
T Consensus         7 ~~~~i~v~G~~~~GKssl~~~l~~~~--~~~~~~-~~~~~~~~~~~~~-----~~~--~~~~l~Dt~G~~~~   68 (178)
T 2lkc_A            7 RPPVVTIMGHVDHGKTTLLDAIRHSK--VTEQEA-GGITQHIGAYQVT-----VND--KKITFLDTPGHEAF   68 (178)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHTTC--SSCSSC-CSSSTTCCCCEEE-----ETT--EEEEESCCCSSSSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCc--cccCCC-CceeEeeeEEEEE-----eCC--ceEEEEECCCCHHH
Confidence            34458899999999999999999865  433221 0111111111111     122  45778999997543

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=96.40  E-value=0.079  Score=65.13  Aligned_cols=18  Identities=17%  Similarity=0.309  Sum_probs=14.4

Q ss_pred             CceEEEEeecCCCcccCC
Q 004698          126 TEYNLLLLDSEGIDAYDQ  143 (736)
Q Consensus       126 ~~~~v~llDteG~~~~~~  143 (736)
                      ....|=+||..||..++.
T Consensus       429 ~~~~IgvLDI~GFE~f~~  446 (1080)
T 2dfs_A          429 QHSFIGVLDIYGFETFEI  446 (1080)
T ss_dssp             CCEEEEEEEECCCCCCSS
T ss_pred             cCceEEeeccCCccccCc
Confidence            346788999999987765

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=96.39  E-value=0.0086  Score=58.09  Aligned_cols=59  Identities=17%  Similarity=0.117  Sum_probs=35.8

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA  140 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~  140 (736)
                      |.|+|..++|||+|+|+|.+....- ...+....+ +...+.      ..++..+.+.++||.|...
T Consensus        23 i~~vG~~~vGKTsLi~~l~~~~~~~-~~~~~~~~~-~~~~~~------~~~~~~~~l~i~Dt~G~~~   81 (196)
T 3llu_A           23 ILLMGLRRSGKSSIQKVVFHKMSPN-ETLFLESTN-KIYKDD------ISNSSFVNFQIWDFPGQMD   81 (196)
T ss_dssp             EEEEESTTSSHHHHHHHHHSCCCGG-GGGGCCCCC-SCEEEE------ECCTTSCCEEEEECCSSCC
T ss_pred             EEEECCCCCCHHHHHHHHHhcCCCc-ceeeecccc-ceeeee------ccCCCeeEEEEEECCCCHH
Confidence            7889999999999999999853111 111111211 221111      1134557899999999643

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=96.37  E-value=0.003  Score=61.03  Aligned_cols=60  Identities=18%  Similarity=0.139  Sum_probs=40.4

Q ss_pred             EEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        71 v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      ..=|.|+|..++|||+|+|+|.+..  |..   ....|.|.-.... +   ..+|..+.+.++||+|..
T Consensus        23 ~~ki~~vG~~~~GKSsl~~~l~~~~--~~~---~~~~t~~~~~~~~-~---~~~~~~~~~~i~Dt~G~~   82 (194)
T 3reg_A           23 ALKIVVVGDGAVGKTCLLLAFSKGE--IPT---AYVPTVFENFSHV-M---KYKNEEFILHLWDTAGQE   82 (194)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSC--CCS---SCCCCSEEEEEEE-E---EETTEEEEEEEEEECCSG
T ss_pred             eeEEEEECcCCCCHHHHHHHHhcCC--CCC---ccCCeeeeeeEEE-E---EECCEEEEEEEEECCCcH
Confidence            3448899999999999999999875  421   1123444443321 1   124566788999999954

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=96.36  E-value=0.0026  Score=68.89  Aligned_cols=63  Identities=19%  Similarity=0.238  Sum_probs=32.4

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccC-----CCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVAS-----THRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA  140 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~-----~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~  140 (736)
                      |+|+|+.++|||+|+|.|+|.. -|..+.     .....|.|+-.....+.   .+|..+.+.++||+|+++
T Consensus        40 I~vvG~~g~GKSTLln~L~~~~-~~~~~~~~~~~~~~~~ti~~~~~~~~~~---~~~~~~~l~i~DTpG~gd  107 (361)
T 2qag_A           40 LMVVGESGLGKSTLINSLFLTD-LYPERVIPGAAEKIERTVQIEASTVEIE---ERGVKLRLTVVDTPGYGD  107 (361)
T ss_dssp             EEECCCTTSCHHHHHHHHTTCC-C---------------CEEEEEEEEC-------CEEEEEEEEC------
T ss_pred             EEEEcCCCCCHHHHHHHHhCCC-CCCCCcccCCCcccCCceeEEEEEEEee---cCCcccceEEEEeccccc
Confidence            6999999999999999999863 232221     01123555544333221   234456789999999864

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=96.35  E-value=0.0049  Score=60.07  Aligned_cols=63  Identities=17%  Similarity=0.128  Sum_probs=40.2

Q ss_pred             CCEEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           69 EPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        69 ~~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      .+..-|.|+|+.++|||+|+|+|.|....|...++.     |.-.....+.   .+|..+.+.++||.|..
T Consensus        21 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~-----~~~~~~~~~~---~~~~~~~l~i~Dt~g~~   83 (195)
T 3cbq_A           21 DGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPEN-----PEDTYERRIM---VDKEEVTLVVYDIWEQG   83 (195)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTS-----CTTEEEEEEE---ETTEEEEEEEECCCCCS
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCc-----ccceEEEEEE---ECCEEEEEEEEecCCCc
Confidence            345679999999999999999998765334322221     1111111111   24566888999999964

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=96.35  E-value=0.0038  Score=60.27  Aligned_cols=58  Identities=22%  Similarity=0.289  Sum_probs=37.4

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      =|.|+|..++|||+|+|+|++..  |..  ...+ |.|.-... .+   ..++..+.+.|+||+|..
T Consensus        23 ki~vvG~~~vGKTsLi~~l~~~~--~~~--~~~~-t~~~~~~~-~~---~~~~~~~~l~i~Dt~G~~   80 (187)
T 3c5c_A           23 NLAILGRRGAGKSALTVKFLTKR--FIS--EYDP-NLEDTYSS-EE---TVDHQPVHLRVMDTADLD   80 (187)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSS--CCS--CCCT-TCCEEEEE-EE---EETTEEEEEEEEECCC--
T ss_pred             EEEEECCCCCcHHHHHHHHHhCC--CCc--ccCC-CccceeeE-EE---EECCEEEEEEEEECCCCC
Confidence            38899999999999999999765  431  1222 33332221 11   124556888999999964

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=96.34  E-value=0.00089  Score=63.44  Aligned_cols=62  Identities=18%  Similarity=0.155  Sum_probs=38.7

Q ss_pred             EEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        71 v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      -.=|.|+|+.++|||+|+|+|.+..  |....   ..|.|+-.....+..  +++..+.+.++||+|..
T Consensus         6 ~~ki~v~G~~~~GKssl~~~l~~~~--~~~~~---~~t~~~~~~~~~~~~--~~~~~~~~~~~Dt~G~~   67 (178)
T 2hxs_A            6 QLKIVVLGDGASGKTSLTTCFAQET--FGKQY---KQTIGLDFFLRRITL--PGNLNVTLQIWDIGGQT   67 (178)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHGGG--TTHHH---HHTTTSSEEEEEEEE--TTTEEEEEEEEECTTCC
T ss_pred             eEEEEEECcCCCCHHHHHHHHHhCc--CCCCC---CCceeEEEEEEEEEe--CCCCEEEEEEEECCCCc
Confidence            3458899999999999999999765  42110   123332222222211  22345789999999954

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=96.34  E-value=0.0044  Score=60.44  Aligned_cols=58  Identities=21%  Similarity=0.245  Sum_probs=36.5

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA  140 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~  140 (736)
                      |.|+|..++|||+|+|.|.+..  |...  . ..|.|.-.... +   ..+|..+.+.|+||+|...
T Consensus        28 i~vvG~~~~GKSsli~~l~~~~--~~~~--~-~~t~~~~~~~~-~---~~~~~~~~l~i~Dt~G~~~   85 (201)
T 2gco_A           28 LVIVGDGACGKTCLLIVFSKDQ--FPEV--Y-VPTVFENYIAD-I---EVDGKQVELALWDTAGQED   85 (201)
T ss_dssp             EEEEESTTSSHHHHHHHHHHSS--CCSS--C-CCSSCCCCEEE-E---EETTEEEEEEEECCCCSGG
T ss_pred             EEEECCCCCCHHHHHHHHHhCc--CCcc--c-CCcccceEEEE-E---EECCEEEEEEEEECCCchh
Confidence            7899999999999999999765  3211  1 11222211110 1   1135567899999999643

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=96.34  E-value=0.0043  Score=59.30  Aligned_cols=57  Identities=21%  Similarity=0.219  Sum_probs=37.9

Q ss_pred             CEEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        70 ~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      +..-|.|+|+.++|||+|+|+|++..  +.   .. ..|.|+-.....+     +  .+.+.++||+|..
T Consensus        17 ~~~~i~v~G~~~~GKssl~~~l~~~~--~~---~~-~~t~~~~~~~~~~-----~--~~~~~~~Dt~G~~   73 (186)
T 1ksh_A           17 RELRLLMLGLDNAGKTTILKKFNGED--VD---TI-SPTLGFNIKTLEH-----R--GFKLNIWDVGGQK   73 (186)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHTTCC--CS---SC-CCCSSEEEEEEEE-----T--TEEEEEEEECCSH
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCC--CC---cc-cccCccceEEEEE-----C--CEEEEEEECCCCH
Confidence            44458999999999999999999865  21   11 2244433222111     1  3678999999964

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=96.33  E-value=0.0023  Score=61.78  Aligned_cols=59  Identities=25%  Similarity=0.372  Sum_probs=36.1

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      =|.|+|+.++|||+|+|+|++..  |....   ..|.|+-.....+.   .+|..+.+.|+||+|..
T Consensus        23 ki~v~G~~~~GKSsli~~l~~~~--~~~~~---~~t~~~~~~~~~~~---~~~~~~~~~i~Dt~G~~   81 (191)
T 2a5j_A           23 KYIIIGDTGVGKSCLLLQFTDKR--FQPVH---DLTIGVEFGARMVN---IDGKQIKLQIWDTAGQE   81 (191)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHSC--CCC--------CCSSEEEEEEE---ETTEEEEEEEECCTTGG
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC--CCCCC---CCcccceeEEEEEE---ECCEEEEEEEEECCCch
Confidence            37899999999999999999765  43211   11222111111111   13556789999999964

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=96.33  E-value=0.0035  Score=60.50  Aligned_cols=58  Identities=21%  Similarity=0.239  Sum_probs=38.6

Q ss_pred             EEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698           72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA  140 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~  140 (736)
                      .-|.|+|..++|||+|+|+|++..  |....  ...|.|+-....       ++..+.+.|+||+|...
T Consensus        18 ~ki~v~G~~~~GKSsl~~~l~~~~--~~~~~--~~~t~~~~~~~~-------~~~~~~~~i~Dt~G~~~   75 (199)
T 4bas_A           18 LQVVMCGLDNSGKTTIINQVKPAQ--SSSKH--ITATVGYNVETF-------EKGRVAFTVFDMGGAKK   75 (199)
T ss_dssp             EEEEEECCTTSCHHHHHHHHSCCC------C--CCCCSSEEEEEE-------EETTEEEEEEEECCSGG
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCC--Ccccc--cccccceeEEEE-------EeCCEEEEEEECCCCHh
Confidence            347899999999999999999876  54311  123555444321       13457899999999743

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=96.31  E-value=0.0033  Score=68.20  Aligned_cols=55  Identities=24%  Similarity=0.425  Sum_probs=34.9

Q ss_pred             CEEEEEeeCCCCCChhHHHHHHhCCCCcccc----cCCCCCccceEEeeccccccccCCCCceEEEEeecCCC
Q 004698           70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQV----ASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI  138 (736)
Q Consensus        70 ~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~----~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~  138 (736)
                      ++.+|+|+|+.++|||+|+|.|.|..  +.+    +.|..+.+.-|.+          +|  ..+.++||.|+
T Consensus       178 ~~~~V~lvG~~naGKSTLln~L~~~~--~~~~~~~~~T~d~~~~~i~~----------~g--~~v~l~DT~G~  236 (364)
T 2qtf_A          178 NIPSIGIVGYTNSGKTSLFNSLTGLT--QKVDTKLFTTMSPKRYAIPI----------NN--RKIMLVDTVGF  236 (364)
T ss_dssp             -CCEEEEECBTTSSHHHHHHHHHCC-------------CCSCEEEEEE----------TT--EEEEEEECCCB
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHCCC--ccccCCcccccCCEEEEEEE----------CC--EEEEEEeCCCc
Confidence            56679999999999999999999875  322    2233332222222          23  35788999997

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=96.31  E-value=0.0014  Score=63.24  Aligned_cols=26  Identities=23%  Similarity=0.271  Sum_probs=22.6

Q ss_pred             CEEEEEeeCCCCCChhHHHHHHhCCC
Q 004698           70 PIGVVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        70 ~v~vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      +..-|.|+|+.++|||+|+|.|++..
T Consensus        47 ~~~~i~vvG~~g~GKSsll~~l~~~~   72 (193)
T 2ged_A           47 YQPSIIIAGPQNSGKTSLLTLLTTDS   72 (193)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            34468999999999999999999875

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=96.31  E-value=0.00082  Score=65.58  Aligned_cols=62  Identities=21%  Similarity=0.305  Sum_probs=38.5

Q ss_pred             EEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698           71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA  140 (736)
Q Consensus        71 v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~  140 (736)
                      ..=|.|+|+.++|||+|+|.|++..  |....   ..|.|+-.....+.   .++..+.+.|+||+|...
T Consensus        33 ~~ki~vvG~~~~GKSsli~~l~~~~--~~~~~---~~~~~~~~~~~~~~---~~~~~~~~~i~Dt~G~~~   94 (199)
T 3l0i_B           33 LFKLLLIGDSGVGKSCLLLRFADDT--YTESY---ISTIGVDFKIRTIE---LDGKTIKLQIWDTAGQER   94 (199)
T ss_dssp             EEEEEEECCTTSCCTTTTTSSBCCC--CCCHH---HHHHCCSEEEEEEE---ETTEEEEEEEECCTTCTT
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCC--CCCCc---CCcccceEEEEEEE---ECCEEEEEEEEECCCcHh
Confidence            4458899999999999999999865  43211   11222111111111   134557899999999643

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=96.30  E-value=0.002  Score=76.16  Aligned_cols=26  Identities=31%  Similarity=0.579  Sum_probs=22.8

Q ss_pred             CEEEEEeeCCCCCChhHHHHHHhCCC
Q 004698           70 PIGVVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        70 ~v~vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      ++--|+|+|.+.+|||+|+|.|+|..
T Consensus        50 ~lp~I~vvG~~saGKSSllnaL~g~~   75 (772)
T 3zvr_A           50 DLPQIAVVGGQSAGKSSVLENFVGRD   75 (772)
T ss_dssp             CCSEEEEEECTTTCHHHHHHHHHSSC
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            34478999999999999999999975

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.29  E-value=0.0042  Score=60.94  Aligned_cols=59  Identities=22%  Similarity=0.231  Sum_probs=36.9

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698           73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA  140 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~  140 (736)
                      =|.|+|..++|||+|+|.|++..  |...   ...|.|...... +   ..+|..+.+.|+||+|...
T Consensus        27 ki~vvG~~~~GKSsli~~l~~~~--~~~~---~~~t~~~~~~~~-~---~~~~~~~~~~i~Dt~G~~~   85 (207)
T 2fv8_A           27 KLVVVGDGACGKTCLLIVFSKDE--FPEV---YVPTVFENYVAD-I---EVDGKQVELALWDTAGQED   85 (207)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHSS--CC----------CCEEEEE-E---EETTEEEEEEEEECTTCTT
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC--CCCc---CCCcccceEEEE-E---EECCEEEEEEEEECCCcHH
Confidence            38899999999999999999865  4321   112333322211 1   1245567899999999653

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=96.28  E-value=0.0025  Score=62.77  Aligned_cols=61  Identities=20%  Similarity=0.176  Sum_probs=38.0

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeecccccccc-------CCCCceEEEEeecCCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTA-------LDGTEYNLLLLDSEGI  138 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~-------~~g~~~~v~llDteG~  138 (736)
                      =|.|+|+.++|||+|+|.|++..  |...   ...|.|+-.....+....       ..+..+.+.|+||+|.
T Consensus        27 ki~vvG~~~~GKSsLi~~l~~~~--~~~~---~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~   94 (217)
T 2f7s_A           27 KLLALGDSGVGKTTFLYRYTDNK--FNPK---FITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQ   94 (217)
T ss_dssp             EEEEESCTTSSHHHHHHHHHCSC--CCCE---EEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESH
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC--CCcC---CCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCc
Confidence            47899999999999999999875  4221   123455433322221110       0011578999999995

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=96.28  E-value=0.0041  Score=59.64  Aligned_cols=61  Identities=21%  Similarity=0.164  Sum_probs=39.8

Q ss_pred             EEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698           71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA  140 (736)
Q Consensus        71 v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~  140 (736)
                      ..=|.|+|+.++|||+|+|+|.+..  |...  . ..|.|.-.. ..+   ..++..+.+.++||+|...
T Consensus         7 ~~ki~v~G~~~vGKSsli~~l~~~~--~~~~--~-~~t~~~~~~-~~~---~~~~~~~~~~i~Dt~G~~~   67 (184)
T 1m7b_A            7 KCKIVVVGDSQCGKTALLHVFAKDC--FPEN--Y-VPTVFENYT-ASF---EIDTQRIELSLWDTSGSPY   67 (184)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSC--CCSS--C-CCCSEEEEE-EEE---ECSSCEEEEEEEEECCSGG
T ss_pred             EEEEEEECCCCCCHHHHHHHHhcCC--CCCC--C-CCccceeEE-EEE---EECCEEEEEEEEECCCChh
Confidence            3458899999999999999999865  4321  1 223333221 111   1245568899999999643

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=96.28  E-value=0.0041  Score=60.03  Aligned_cols=57  Identities=25%  Similarity=0.420  Sum_probs=39.2

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      =|.|+|+.++|||+|+|+|++..  |....   ..|.|.+.  ..+   ..+|..+.+.++||.|..
T Consensus        22 ki~ivG~~~vGKSsL~~~~~~~~--~~~~~---~~t~~~~~--~~~---~~~~~~~~l~i~Dt~G~~   78 (184)
T 3ihw_A           22 KVGIVGNLSSGKSALVHRYLTGT--YVQEE---SPEGGRFK--KEI---VVDGQSYLLLIRDEGGPP   78 (184)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHSS--CCCCC---CTTCEEEE--EEE---EETTEEEEEEEEECSSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC--CCCCc---CCCcceEE--EEE---EECCEEEEEEEEECCCCh
Confidence            38899999999999999999765  53221   22445433  222   124666888999999964

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=96.28  E-value=0.0027  Score=63.15  Aligned_cols=63  Identities=21%  Similarity=0.342  Sum_probs=38.6

Q ss_pred             CEEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698           70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA  140 (736)
Q Consensus        70 ~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~  140 (736)
                      +..=|.|+|+.++|||+|+|.|++..  |....   ..|.|+-.....+.   .+|..+.+.|+||+|...
T Consensus        12 ~~~ki~v~G~~~vGKSsli~~l~~~~--~~~~~---~~t~~~~~~~~~~~---~~~~~~~~~i~Dt~G~~~   74 (223)
T 3cpj_B           12 LLFKIVLIGDSGVGKSNLLSRFTKNE--FNMDS---KSTIGVEFATRTLE---IEGKRIKAQIWDTAGQER   74 (223)
T ss_dssp             EEEEEEEESCTTSSHHHHHHHHHHCC--CCC---------CCSEEEEEEE---ETTEEEEEEEECCTTTTT
T ss_pred             eeeEEEEECcCCCCHHHHHHHHhcCC--CCCCC---CCcccceeEEEEEE---ECCEEEEEEEEECCCccc
Confidence            44568999999999999999999865  43221   12333211111111   135557899999999643

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.27  E-value=0.0053  Score=58.90  Aligned_cols=58  Identities=21%  Similarity=0.205  Sum_probs=36.4

Q ss_pred             CCEEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           69 EPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        69 ~~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      .+-.-|.|+|..++|||+|+|+|.+.... ...+     |.|+-.+...+     +  .+.+.++||+|..
T Consensus        14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~-----t~~~~~~~~~~-----~--~~~~~i~Dt~G~~   71 (187)
T 1zj6_A           14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSP-----TIGSNVEEIVI-----N--NTRFLMWDIGGQE   71 (187)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEEC-----CSCSSCEEEEE-----T--TEEEEEEECCC--
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcC-----CCccceEEEEE-----C--CEEEEEEECCCCH
Confidence            34455899999999999999999976521 2323     33321111111     1  2678999999974

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=96.27  E-value=0.0037  Score=60.16  Aligned_cols=56  Identities=20%  Similarity=0.170  Sum_probs=37.9

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA  140 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~  140 (736)
                      |.|+|..++|||+|+|+|++.. .|...   ...|.|+-.....+     +  .+.+.|+||+|...
T Consensus        24 i~v~G~~~~GKSsli~~l~~~~-~~~~~---~~~t~~~~~~~~~~-----~--~~~~~l~Dt~G~~~   79 (190)
T 2h57_A           24 VLCLGLDNSGKTTIINKLKPSN-AQSQN---ILPTIGFSIEKFKS-----S--SLSFTVFDMSGQGR   79 (190)
T ss_dssp             EEEEECTTSSHHHHHHHTSCGG-GCCSS---CCCCSSEEEEEEEC-----S--SCEEEEEEECCSTT
T ss_pred             EEEECCCCCCHHHHHHHHhcCC-CCCCC---cCCccceeEEEEEE-----C--CEEEEEEECCCCHH
Confidence            7899999999999999999864 12211   12355654433222     2  26789999999653

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=96.26  E-value=0.0046  Score=68.98  Aligned_cols=55  Identities=33%  Similarity=0.569  Sum_probs=33.0

Q ss_pred             EEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCcc----ceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCT----KGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T----~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      ..|+|+|..++|||+|+|+|+|..  |......-..|    .+..-|           ....+.++||+|++
T Consensus        24 ~~V~lvG~~nvGKSTL~n~l~~~~--~~~v~~~~g~t~~~~~~~~~~-----------~~~~~~liDT~G~~   82 (456)
T 4dcu_A           24 PVVAIVGRPNVGKSTIFNRIAGER--ISIVEDTPGVTRDRIYSSAEW-----------LNYDFNLIDTGGID   82 (456)
T ss_dssp             CEEEEECSSSSSHHHHHHHHEEEE--EC-----------CEEEECTT-----------CSSCCEEECCCC--
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCC--CcccCCCCCcceeEEEEEEEE-----------CCceEEEEECCCCC
Confidence            369999999999999999999875  32111111112    222222           12467889999986

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=96.26  E-value=0.0014  Score=62.54  Aligned_cols=62  Identities=21%  Similarity=0.294  Sum_probs=24.8

Q ss_pred             CEEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        70 ~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      +..=|.|+|+.++|||+|+|+|.+..  |...   ...|.|+-.....+.   .+|..+.+.|+||+|..
T Consensus         7 ~~~ki~v~G~~~~GKssl~~~l~~~~--~~~~---~~~t~~~~~~~~~~~---~~~~~~~~~l~Dt~G~~   68 (183)
T 2fu5_C            7 YLFKLLLIGDSGVGKTCVLFRFSEDA--FNST---FISTIGIDFKIRTIE---LDGKRIKLQIWDTAGQE   68 (183)
T ss_dssp             EEEEEEEECCCCC------------------C---HHHHHCEEEEEEEEE---ETTEEEEEEEEEC----
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCC--CCCC---CCCcccceeEEEEEE---ECCEEEEEEEEcCCCCh
Confidence            34568999999999999999999764  4321   122444322222111   14556889999999964

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=96.25  E-value=0.0038  Score=69.36  Aligned_cols=57  Identities=23%  Similarity=0.419  Sum_probs=36.7

Q ss_pred             EEEEeeCCCCCChhHHHHHHhCCCCcc--cccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           72 GVVSVCGRARQGKSFILNQLLGRSSGF--QVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~~~~~gF--~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      .-|+|+|+.++|||+|+|.|+|....+  ...+++...+.|.+.|.         |  ..+.++||+|+.
T Consensus       181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~---------g--~~~~l~Dt~G~~  239 (439)
T 1mky_A          181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFID---------G--RKYVFVDTAGLR  239 (439)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEET---------T--EEEEESSCSCC-
T ss_pred             ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEEC---------C--EEEEEEECCCCc
Confidence            469999999999999999999975211  11122223345666653         3  257789999973

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=96.23  E-value=0.0018  Score=66.94  Aligned_cols=57  Identities=32%  Similarity=0.400  Sum_probs=33.4

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCccc
Q 004698           73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAY  141 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~  141 (736)
                      -|.|+|..++|||+|+|.|+|... ..+++.. .+|+++-...    .    +  ..+.++||+|+...
T Consensus       101 ~v~~vG~~~vGKSslin~l~~~~~-~~~~~~~-g~T~~~~~~~----~----~--~~~~l~DtpG~~~~  157 (262)
T 3cnl_A          101 RVLIVGVPNTGKSTIINKLKGKRA-SSVGAQP-GITKGIQWFS----L----E--NGVKILDTPGILYK  157 (262)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTTCC------------CCSCEEE----C----T--TSCEEESSCEECCC
T ss_pred             heEEeCCCCCCHHHHHHHHhcccc-cccCCCC-CCccceEEEE----e----C--CCEEEEECCCcccC
Confidence            578899999999999999998752 2333321 2344431110    0    1  13678999998654

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=96.22  E-value=0.006  Score=59.08  Aligned_cols=55  Identities=15%  Similarity=0.049  Sum_probs=36.3

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698           73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA  140 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~  140 (736)
                      -|+|+|+.++|||+|+|+|.+..  |...    ..|.|.-.....     .+|  +.+.++||+|...
T Consensus        25 ki~~vG~~~vGKSsli~~l~~~~--~~~~----~~t~~~~~~~~~-----~~~--~~~~i~Dt~G~~~   79 (190)
T 1m2o_B           25 KLLFLGLDNAGKTTLLHMLKNDR--LATL----QPTWHPTSEELA-----IGN--IKFTTFDLGGHIQ   79 (190)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSC--CCCC----CCCCSCEEEEEE-----ETT--EEEEEEECCCSGG
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC--CCcc----ccCCCCCeEEEE-----ECC--EEEEEEECCCCHH
Confidence            58899999999999999999765  4321    123333221111     123  6789999999754

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=96.21  E-value=0.0046  Score=60.42  Aligned_cols=56  Identities=20%  Similarity=0.185  Sum_probs=34.7

Q ss_pred             CCEEEEEeeCCCCCChhHHHHHHhCCCCcccc-cCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           69 EPIGVVSVCGRARQGKSFILNQLLGRSSGFQV-ASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        69 ~~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~-~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      .++ -|+|+|+.++|||+|+|+|.+..  |.. .++..+ +.+.+.+         +|  +.+.++||+|..
T Consensus        24 ~~~-ki~lvG~~~vGKSsLi~~l~~~~--~~~~~~t~~~-~~~~~~~---------~~--~~l~i~Dt~G~~   80 (198)
T 1f6b_A           24 KTG-KLVFLGLDNAGKTTLLHMLKDDR--LGQHVPTLHP-TSEELTI---------AG--MTFTTFDLGGHI   80 (198)
T ss_dssp             CCE-EEEEEEETTSSHHHHHHHHSCC--------CCCCC-SCEEEEE---------TT--EEEEEEEECC--
T ss_pred             CCc-EEEEECCCCCCHHHHHHHHhcCC--CCccCCCCCc-eeEEEEE---------CC--EEEEEEECCCcH
Confidence            444 47899999999999999999865  422 222222 2333322         23  678899999964

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=96.21  E-value=0.0048  Score=64.10  Aligned_cols=55  Identities=22%  Similarity=0.306  Sum_probs=36.9

Q ss_pred             EEEEeeCCCCCChhHHHHHHhCCCCcccccCC----CCCccceEEeeccccccccCCCCceEEEEeecCCCccc
Q 004698           72 GVVSVCGRARQGKSFILNQLLGRSSGFQVAST----HRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAY  141 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~----~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~  141 (736)
                      ..|+++|+.++|||+|+|.|.|..  +.+++.    +. ...|.+-           + .+.+.++||+|..+.
T Consensus         4 ~kI~lvG~~nvGKSTL~n~L~g~~--~~v~~~pg~tv~-~~~~~~~-----------~-~~~l~l~DtpG~~~~   62 (272)
T 3b1v_A            4 TEIALIGNPNSGKTSLFNLITGHN--QRVGNWPGVTVE-RKSGLVK-----------K-NKDLEIQDLPGIYSM   62 (272)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHCCC--CCCCSSSCCCCS-CEEEECT-----------T-CTTEEEEECCCCSCS
T ss_pred             eEEEEECCCCCCHHHHHHHHHCCC--CcccCCCCCcEE-EEEEEEe-----------c-CCeEEEEECCCcCcc
Confidence            358999999999999999999864  334332    11 1122211           1 245788999998654

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=96.20  E-value=0.0038  Score=59.20  Aligned_cols=58  Identities=28%  Similarity=0.378  Sum_probs=38.3

Q ss_pred             EEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      .=|.|+|+.++|||+|+|+|.+..  |..   ..| |.|.-. ...+   ..+|..+.+.++||+|..
T Consensus         8 ~ki~~vG~~~vGKTsli~~l~~~~--~~~---~~~-t~~~~~-~~~~---~~~~~~~~l~i~Dt~G~~   65 (178)
T 2iwr_A            8 LRLGVLGDARSGKSSLIHRFLTGS--YQV---LEK-TESEQY-KKEM---LVDGQTHLVLIREEAGAP   65 (178)
T ss_dssp             EEEEEECCGGGCHHHHHHHHHHSC--CCC---CSS-CSSSEE-EEEE---EETTEEEEEEEEECSSSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCC--CCC---cCC-CcceeE-EEEE---EECCEEEEEEEEECCCCc
Confidence            348899999999999999999865  532   112 333211 1111   124556788999999964

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=96.20  E-value=0.0026  Score=62.30  Aligned_cols=60  Identities=20%  Similarity=0.317  Sum_probs=35.8

Q ss_pred             EEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      .-|.|+|..++|||+|+|+|.+..  |....   ..|.|+-.....+.   .+|..+.+.|+||+|..
T Consensus        30 ~ki~vvG~~~vGKSsli~~l~~~~--~~~~~---~~t~~~~~~~~~~~---~~~~~~~l~i~Dt~G~~   89 (201)
T 2hup_A           30 FKLVLVGDASVGKTCVVQRFKTGA--FSERQ---GSTIGVDFTMKTLE---IQGKRVKLQIWDTAGQE   89 (201)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHSC--C-------------CEEEEEEE---ETTEEEEEEEECCTTCG
T ss_pred             eEEEEECcCCCCHHHHHHHHhhCC--CCCCC---CCCcceEEEEEEEE---ECCEEEEEEEEECCCcH
Confidence            348899999999999999999765  43211   23444322211111   13555789999999953

>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}

Probab=96.18  E-value=0.056  Score=46.07  Aligned_cols=80  Identities=15%  Similarity=0.275  Sum_probs=69.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 004698          503 KRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSS  582 (736)
Q Consensus       503 ~~l~~~i~~e~~~L~~k~es~e~e~~~lk~~Le~~e~~~~e~~k~~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~  582 (736)
                      ++.++.+..++..+...++.+...++..+..++.....    +...+.+++.+++.++++..-.++||.+++++.+++.+
T Consensus         6 r~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~----R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~f   81 (86)
T 3swk_A            6 RRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQ----REEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAF   81 (86)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566678889999999999999999999999873332    46789999999999999999999999999999999999


Q ss_pred             HHHH
Q 004698          583 LSKT  586 (736)
Q Consensus       583 L~~~  586 (736)
                      |++.
T Consensus        82 Lkk~   85 (86)
T 3swk_A           82 LKKL   85 (86)
T ss_dssp             HTTC
T ss_pred             Hhhc
Confidence            9753

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=96.17  E-value=0.0042  Score=59.82  Aligned_cols=55  Identities=18%  Similarity=0.207  Sum_probs=37.4

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      -|.|+|..++|||+|+|+|++..  |...   ...|.|+-....       ++..+.+.|+||+|..
T Consensus        24 ki~v~G~~~~GKSsli~~l~~~~--~~~~---~~~t~~~~~~~~-------~~~~~~~~l~Dt~G~~   78 (188)
T 1zd9_A           24 ELTLVGLQYSGKTTFVNVIASGQ--FNED---MIPTVGFNMRKI-------TKGNVTIKLWDIGGQP   78 (188)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC--CCCS---CCCCCSEEEEEE-------EETTEEEEEEEECCSH
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC--CCCc---cCCCCceeEEEE-------EeCCEEEEEEECCCCH
Confidence            37899999999999999999765  4321   122445443321       1234788999999964

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=96.15  E-value=0.0038  Score=67.58  Aligned_cols=64  Identities=20%  Similarity=0.275  Sum_probs=37.8

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCCCcccccC----CCCCccceEEeeccccc-----cccCCC-CceEEEEeecCCCc
Q 004698           73 VVSVCGRARQGKSFILNQLLGRSSGFQVAS----THRPCTKGLWLWSAPLK-----RTALDG-TEYNLLLLDSEGID  139 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~----~~~~~T~Giw~w~~p~~-----~~~~~g-~~~~v~llDteG~~  139 (736)
                      -|+|+|.+++|||+|+|.|.+..  +.+++    |..| +.|++.|..+-.     ...|.. ....+.|+||+|+.
T Consensus         4 kI~IVG~pnvGKSTL~n~Lt~~~--~~v~~~p~tTi~p-~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~   77 (363)
T 1jal_A            4 KCGIVGLPNVGKSTLFNALTKAG--IEAANYPFCTIEP-NTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLV   77 (363)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHTC--------CCCCCCC-CSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCC
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC--CcccCCCCceECc-eEEEEecCCcccceeeeeecccceeeeEEEEEECCCCc
Confidence            37899999999999999999865  44432    3333 457665532100     000000 01468899999985

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.14  E-value=0.0025  Score=62.85  Aligned_cols=57  Identities=16%  Similarity=0.105  Sum_probs=36.7

Q ss_pred             CEEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698           70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA  140 (736)
Q Consensus        70 ~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~  140 (736)
                      +..-|.|+|+.++|||+|+|+|.+..  |....+....|.|...            ..+.+.++||+|...
T Consensus        11 ~~~~i~~~G~~g~GKTsl~~~l~~~~--~~~~~~~~~~~~~~~~------------~~~~~~l~Dt~G~~~   67 (218)
T 1nrj_B           11 YQPSIIIAGPQNSGKTSLLTLLTTDS--VRPTVVSQEPLSAADY------------DGSGVTLVDFPGHVK   67 (218)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHSS--CCCBCCCSSCEEETTG------------GGSSCEEEECCCCGG
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC--CCCeeeecCceEEEEe------------eCceEEEEECCCcHH
Confidence            34458899999999999999999875  4321111112222211            124688999999753

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=96.14  E-value=0.0024  Score=71.87  Aligned_cols=61  Identities=28%  Similarity=0.350  Sum_probs=28.0

Q ss_pred             CCEEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           69 EPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        69 ~~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      .++. |+|+|.+++|||+|+|.|+|....+ + +....+|..+......     .+|  +.+.|+||+|+.
T Consensus       232 ~~~k-V~ivG~~nvGKSSLln~L~~~~~a~-v-s~~~gtT~d~~~~~i~-----~~g--~~l~liDT~G~~  292 (476)
T 3gee_A          232 EGVS-TVIAGKPNAGKSTLLNTLLGQERAI-V-SHMPGTTRDYIEECFI-----HDK--TMFRLTDTAGLR  292 (476)
T ss_dssp             HCEE-EEEECCTTSSHHHHHHHCC--------------------CEEEE-----ETT--EEEEEEC-----
T ss_pred             CCCE-EEEECCCCCCHHHHHHHHhCCCCcc-c-CCCCCceEEEEEEEEE-----ECC--eEEEEEECCCCC
Confidence            3454 8999999999999999999875221 1 1112233333211111     123  578999999974

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=96.14  E-value=0.0073  Score=59.16  Aligned_cols=61  Identities=25%  Similarity=0.168  Sum_probs=39.6

Q ss_pred             EEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698           71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA  140 (736)
Q Consensus        71 v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~  140 (736)
                      ..=|.|+|..++|||+|+|+|.+..  |..  .. ..|.|.... ..+   ..+|..+.+.|+||+|...
T Consensus         9 ~~ki~i~G~~~~GKTsli~~l~~~~--~~~--~~-~~t~~~~~~-~~~---~~~~~~~~~~i~Dt~G~~~   69 (212)
T 2j0v_A            9 FIKCVTVGDGAVGKTCMLICYTSNK--FPT--DY-IPTVFDNFS-ANV---AVDGQIVNLGLWDTAGQED   69 (212)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSC--CCS--SC-CCSSCCCEE-EEE---ECSSCEEEEEEECCCCCCC
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCC--CCc--cC-CCccceeEE-EEE---EECCEEEEEEEEECCCcHH
Confidence            3458899999999999999999765  421  11 123332221 111   1245668899999999753

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*

Probab=96.13  E-value=0.057  Score=59.43  Aligned_cols=118  Identities=10%  Similarity=0.145  Sum_probs=77.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 004698          585 KTVDSLKNEISDWKRKYDQVLTKQKAMED-QVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVE-EWKRKYGVAVREAK  662 (736)
Q Consensus       585 ~~le~lk~e~~e~~~~yee~~~~~~~~~~-~~~~~i~~L~~k~~~~E~~~~~~~~q~~~~~~E~~-e~~~ky~~~~~e~k  662 (736)
                      ++=..+++-+++++.+|++. .+.++.++ .++..++.|+.       ++..+. +.+++..|++ |++|+|+.+.++.-
T Consensus        57 kqErDltkrINELKnqLEdl-sKnsKdseqy~k~~~E~Lr~-------rq~q~~-dNdNtynE~S~ELRRrIqyLKekVd  127 (562)
T 3ghg_A           57 EVNQDFTNRINKLKNSLFEY-QKNNKDSHSLTTNIMEILRG-------DFSSAN-NRDNTYNRVSEDLRSRIEVLKRKVI  127 (562)
T ss_dssp             HHHHHHHHHHHHHHHHHTHH-HHHHHHHHHHHHHHHHTTSS-------HHHHHH-HHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             hhcCcHHHHHHHHHHHHHHH-HhhchhHHHHHHHHHHHHHH-------HHHhhh-ccchhHHHHHHHHHHHHHHHHHHHH
Confidence            33356677888888888887 66767777 45555557777       666666 8888999999 99999999988775


Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhHHHHHHHHH-------------HHHHHHHHHHHHHhhHH
Q 004698          663 AALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMK-------------EKATKIEHAEQCLTTLR  719 (736)
Q Consensus       663 alle~~~~~~e~~~e~~~~~~~~l~~e~~~~~~e~~~~~~-------------~~~~k~~~~~~~~~~~~  719 (736)
                      .-+ +-+..++       ..++.++.+++.+-.+++.||+             .=..-|+.++++|.++.
T Consensus       128 nQl-snIrvLQ-------snLedq~~kIQRLEvDIdiqirsCKgsCsr~~~~~vd~~sY~~~QKQLeQv~  189 (562)
T 3ghg_A          128 EKV-QHIQLLQ-------KNVRAQLVDMKRLEVDIDIKIRSCRGSCSRALAREVDLKDYEDQQKQLEQVI  189 (562)
T ss_dssp             HHH-HHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHGGGTBSCCCCCCCCHHHHHHHHHHHHHHH
T ss_pred             HHH-HHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhccccccchheeecchHHHHHHHHHHHHHh
Confidence            444 3334444       4445555555555555555532             12334666666666554

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=96.12  E-value=0.0075  Score=58.13  Aligned_cols=60  Identities=22%  Similarity=0.202  Sum_probs=38.8

Q ss_pred             EEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698           72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA  140 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~  140 (736)
                      .-|.|+|+.++|||+|+|+|++..  |.-  .. ..|.|.... ..+   ..+|..+.+.++||+|...
T Consensus        19 ~ki~v~G~~~~GKssli~~l~~~~--~~~--~~-~~t~~~~~~-~~~---~~~~~~~~~~i~D~~G~~~   78 (194)
T 2atx_A           19 LKCVVVGDGAVGKTCLLMSYANDA--FPE--EY-VPTVFDHYA-VSV---TVGGKQYLLGLYDTAGQED   78 (194)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHSS--CCC--SC-CCSSCCCEE-EEE---ESSSCEEEEEEECCCCSSS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcCC--CCC--CC-CCcccceeE-EEE---EECCEEEEEEEEECCCCcc
Confidence            348899999999999999999764  421  11 122232221 111   1245668899999999753

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=96.11  E-value=0.0053  Score=60.46  Aligned_cols=59  Identities=22%  Similarity=0.193  Sum_probs=39.2

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698           73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA  140 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~  140 (736)
                      =|.|+|+.++|||+|+|+|.+..  |...  . ..|.|.-.. ..+   ..++..+.+.|+||+|...
T Consensus        30 ki~vvG~~~vGKSsLi~~l~~~~--~~~~--~-~~t~~~~~~-~~~---~~~~~~~~l~i~Dt~G~~~   88 (205)
T 1gwn_A           30 KIVVVGDSQCGKTALLHVFAKDC--FPEN--Y-VPTVFENYT-ASF---EIDTQRIELSLWDTSGSPY   88 (205)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSC--CCSS--C-CCCSEEEEE-EEE---ESSSSEEEEEEEEECCSGG
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC--CCCC--c-CCccceeEE-EEE---EECCEEEEEEEEeCCCcHh
Confidence            37899999999999999999865  4321  1 223343321 111   1245668899999999643

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=96.08  E-value=0.0055  Score=60.06  Aligned_cols=59  Identities=25%  Similarity=0.272  Sum_probs=36.9

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698           73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA  140 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~  140 (736)
                      -|.|+|..++|||+|+|+|.+..  |.-  ...+ |.|-.... .+   ..+|..+.+.++||+|...
T Consensus        32 ki~vvG~~~~GKSsLi~~l~~~~--~~~--~~~~-t~~~~~~~-~~---~~~~~~~~l~i~Dt~G~~~   90 (204)
T 4gzl_A           32 KCVVVGDGAVGKTCLLISYTTNA--FPG--EYIP-TVFDNYSA-NV---MVDGKPVNLGLWDTAGLED   90 (204)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSC--CCC---CCC-CSEEEEEE-EE---ECC-CEEEEEEEEECCSGG
T ss_pred             EEEEECcCCCCHHHHHHHHHhCC--CCC--CcCC-eecceeEE-EE---EECCEEEEEEEEECCCchh
Confidence            47899999999999999999654  311  1112 22322111 11   1246678888999999753

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=96.08  E-value=0.0062  Score=56.64  Aligned_cols=53  Identities=23%  Similarity=0.270  Sum_probs=36.1

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      |.|+|+.++|||+|+|+|++..  |.-   ..| |.|+-....       +...+.+.++||+|..
T Consensus         3 i~~~G~~~~GKssl~~~l~~~~--~~~---~~~-t~~~~~~~~-------~~~~~~~~i~Dt~G~~   55 (164)
T 1r8s_A            3 ILMVGLDAAGKTTILYKLKLGE--IVT---TIP-TIGFNVETV-------EYKNISFTVWDVGGQD   55 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHC--SSC---CCC-CSSCCEEEE-------ECSSCEEEEEECCCCG
T ss_pred             EEEECCCCCCHHHHHHHHHcCC--cCc---ccC-cCceeEEEE-------EECCEEEEEEEcCCCh
Confidence            7899999999999999998765  421   122 555322211       1234678999999964

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=96.07  E-value=0.007  Score=57.81  Aligned_cols=53  Identities=23%  Similarity=0.277  Sum_probs=35.4

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCccc-ccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQ-VASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA  140 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~-~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~  140 (736)
                      |.|+|..++|||+|+|+|++..  |. ..+     |.|+-.....+     +  ++.+.++||+|...
T Consensus        24 i~v~G~~~~GKSsli~~l~~~~--~~~~~~-----t~~~~~~~~~~-----~--~~~~~i~Dt~G~~~   77 (181)
T 2h17_A           24 VIIVGLDNAGKTTILYQFSMNE--VVHTSP-----TIGSNVEEIVI-----N--NTRFLMWDIGGQES   77 (181)
T ss_dssp             EEEEEETTSSHHHHHHHHHTTS--CEEEEC-----CSSSSCEEEEE-----T--TEEEEEEEESSSGG
T ss_pred             EEEECCCCCCHHHHHHHHhcCC--CCccCC-----cCceeeEEEEE-----C--CEEEEEEECCCCHh
Confidence            7899999999999999999876  41 222     33322111111     2  26789999999753

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=96.04  E-value=0.0039  Score=67.77  Aligned_cols=57  Identities=23%  Similarity=0.233  Sum_probs=36.3

Q ss_pred             EEeeCCCCCChhHHHHHHhCC----CCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCccc
Q 004698           74 VSVCGRARQGKSFILNQLLGR----SSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAY  141 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~----~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~  141 (736)
                      |+++|..++|||+|+|.|+|.    .....+++.. .+|.++-...  +      +.  .+.++||||+...
T Consensus       165 i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~-gtT~~~~~~~--~------~~--~~~liDtPG~~~~  225 (369)
T 3ec1_A          165 VYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFP-GTTLDMIEIP--L------ES--GATLYDTPGIINH  225 (369)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECT-TSSCEEEEEE--C------ST--TCEEEECCSCCCC
T ss_pred             EEEEcCCCCchHHHHHHHHhhccCCccceeecCCC-CeEEeeEEEE--e------CC--CeEEEeCCCcCcH
Confidence            778999999999999999986    1123333222 2455442211  1      11  2688999999654

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=96.01  E-value=0.0063  Score=60.11  Aligned_cols=59  Identities=24%  Similarity=0.273  Sum_probs=32.4

Q ss_pred             EEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      .-|.|+|..++|||+|+|.|++..  |...  ..+ |.|.-.. ..+   ..+|..+.+.|+||+|..
T Consensus        35 ~ki~vvG~~~vGKSsli~~l~~~~--~~~~--~~~-t~~~~~~-~~~---~~~~~~~~l~l~Dt~G~~   93 (214)
T 2j1l_A           35 VKVVLVGDGGCGKTSLLMVFADGA--FPES--YTP-TVFERYM-VNL---QVKGKPVHLHIWDTAGQD   93 (214)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHC-----------CC-CCCEEEE-EEE---EETTEEEEEEEEEC----
T ss_pred             EEEEEECcCCCCHHHHHHHHHcCC--CCCC--CCC-ccceeEE-EEE---EECCEEEEEEEEECCCch
Confidence            348899999999999999999865  4211  112 2222111 111   124556789999999964

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=96.00  E-value=0.0085  Score=58.77  Aligned_cols=58  Identities=19%  Similarity=0.322  Sum_probs=37.3

Q ss_pred             EEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      .-|.|+|+.++|||+|+|+|++..  |.-..  .+.+.....+.  +    .++..+.+.++||+|..
T Consensus         8 ~ki~vvG~~~~GKTsli~~l~~~~--~~~~~--~~~~~~~~~~~--~----~~~~~~~~~i~Dt~G~~   65 (214)
T 2fh5_B            8 RAVLFVGLCDSGKTLLFVRLLTGQ--YRDTQ--TSITDSSAIYK--V----NNNRGNSLTLIDLPGHE   65 (214)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHSC--CCCBC--CCCSCEEEEEE--C----SSTTCCEEEEEECCCCH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC--ccccc--CCcceeeEEEE--e----cCCCccEEEEEECCCCh
Confidence            358899999999999999999765  43211  12222222211  1    12224789999999964

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=95.99  E-value=0.0075  Score=60.09  Aligned_cols=62  Identities=24%  Similarity=0.237  Sum_probs=38.7

Q ss_pred             EEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        71 v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      ..=|.|+|..++|||+|+|+|.|....|.  +..  .|.|.-.....+   ..+|..+.++++||.|..
T Consensus        37 ~~kVvlvG~~~vGKSSLl~r~~~~~~~~~--~~~--~~~g~d~~~~~i---~~~~~~~~l~~~Dt~g~~   98 (211)
T 2g3y_A           37 YYRVVLIGEQGVGKSTLANIFAGVHDSMD--SDC--EVLGEDTYERTL---MVDGESATIILLDMWENK   98 (211)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHCCCCTTC--CC-----CCTTEEEEEE---EETTEEEEEEEECCTTTT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCC--CcC--CccceeeEEEEE---EECCeeeEEEEeecCCCc
Confidence            34589999999999999999998653342  111  122221111111   124666788999999854

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=95.98  E-value=0.0058  Score=58.05  Aligned_cols=57  Identities=19%  Similarity=0.132  Sum_probs=34.7

Q ss_pred             CEEEEEeeCCCCCChhHHHHHHhCCCCcc-cccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698           70 PIGVVSVCGRARQGKSFILNQLLGRSSGF-QVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA  140 (736)
Q Consensus        70 ~v~vVsv~G~~rtGKS~LlN~l~~~~~gF-~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~  140 (736)
                      +-.-|.|+|+.++|||+|+|+|++..  | ...     .|.|+......+     +  .+.+.++||+|...
T Consensus        17 ~~~~i~v~G~~~~GKssli~~l~~~~--~~~~~-----~t~~~~~~~~~~-----~--~~~~~i~Dt~G~~~   74 (183)
T 1moz_A           17 KELRILILGLDGAGKTTILYRLQIGE--VVTTK-----PTIGFNVETLSY-----K--NLKLNVWDLGGQTS   74 (183)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTCCSE--EEEEC-----SSTTCCEEEEEE-----T--TEEEEEEEEC----
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCC--cCccC-----CcCccceEEEEE-----C--CEEEEEEECCCCHh
Confidence            34458899999999999999999765  3 112     233422211111     1  26788999999754

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=95.98  E-value=0.012  Score=56.26  Aligned_cols=67  Identities=22%  Similarity=0.191  Sum_probs=41.3

Q ss_pred             HHhhccC-CCEEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698           62 AALQLVK-EPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA  140 (736)
Q Consensus        62 ~~L~~i~-~~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~  140 (736)
                      +.|..-. .+-.-|.|+|+.++|||+|+|+|.+..  |.-   ..| |.|+-.....+       ..+.+.++||+|...
T Consensus        12 ~~l~~f~~~~~~~i~v~G~~~~GKssli~~l~~~~--~~~---~~~-t~~~~~~~~~~-------~~~~~~~~Dt~G~~~   78 (189)
T 2x77_A           12 QTLGLLPADRKIRVLMLGLDNAGKTSILYRLHLGD--VVT---TVP-TVGVNLETLQY-------KNISFEVWDLGGQTG   78 (189)
T ss_dssp             HHHHTSCTTSCEEEEEEEETTSSHHHHHHHTCCSC--CEE---ECS-STTCCEEEEEE-------TTEEEEEEEECCSSS
T ss_pred             HHhhhccCCCceEEEEECCCCCCHHHHHHHHHcCC--CCC---cCC-CCceEEEEEEE-------CCEEEEEEECCCCHh
Confidence            3343433 344459999999999999999998765  421   112 44422211111       136789999999754


Q ss_pred             c
Q 004698          141 Y  141 (736)
Q Consensus       141 ~  141 (736)
                      .
T Consensus        79 ~   79 (189)
T 2x77_A           79 V   79 (189)
T ss_dssp             S
T ss_pred             H
Confidence            3

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=95.97  E-value=0.0037  Score=59.31  Aligned_cols=59  Identities=20%  Similarity=0.204  Sum_probs=30.7

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698           73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA  140 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~  140 (736)
                      =|.|+|+.++|||+|+|+|.+..  |...  . ..|.|.-... .+   ..+|..+.+.++||+|...
T Consensus        10 ki~v~G~~~~GKssl~~~~~~~~--~~~~--~-~~t~~~~~~~-~~---~~~~~~~~~~i~Dt~G~~~   68 (182)
T 3bwd_D           10 KCVTVGDGAVGKTCLLISYTSNT--FPTD--Y-VPTVFDNFSA-NV---VVNGATVNLGLWDTAGQED   68 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC--CC-------------CBC-CC---C-------CEEECCCC-CT
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC--CCCC--C-CCeeeeeEEE-EE---EECCEEEEEEEEECCCChh
Confidence            37899999999999999999765  4211  1 2233322211 11   1245567788999999643

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=95.97  E-value=0.67  Score=42.37  Aligned_cols=108  Identities=15%  Similarity=0.180  Sum_probs=79.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhh
Q 004698          546 KRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSR  625 (736)
Q Consensus       546 k~~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~yee~~~~~~~~~~~~~~~i~~L~~k  625 (736)
                      +..++.+..++..+...+.....|+.+...+......|..+|.+.+...++.    ++......+...++..++.++..+
T Consensus        16 ~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~----EE~~~~L~~~k~eLe~~l~el~~r   91 (129)
T 2fxo_A           16 ASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADA----EERCDQLIKNKIQLEAKVKEMNKR   91 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566777777777777778888888888888888888888877766555544    444444445556788888888888


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698          626 STAAEARLAAAREQALSAQEEVEEWKRKYGVA  657 (736)
Q Consensus       626 ~~~~E~~~~~~~~q~~~~~~E~~e~~~ky~~~  657 (736)
                      +...|+++..+...-..++.++.+++...+.+
T Consensus        92 leeeee~~~~L~~~kkkle~e~~~Lk~~led~  123 (129)
T 2fxo_A           92 LEDEEEMNAELTAKKRKLEDECSELKRDIDDL  123 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888888888888888887777766544

>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}

Probab=95.96  E-value=1.8  Score=44.66  Aligned_cols=76  Identities=16%  Similarity=0.219  Sum_probs=27.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH----HHHHHHHhhHHHHhhhh
Q 004698          650 WKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKI----EHAEQCLTTLRLELKVS  725 (736)
Q Consensus       650 ~~~ky~~~~~e~kalle~~~~~~e~~~e~~~~~~~~l~~e~~~~~~e~~~~~~~~~~k~----~~~~~~~~~~~~~l~~~  725 (736)
                      ++.+.+....+.+.-++.-+....+..++.+.++.=+-+.|..++..   .+++++.|+    ...+.+++-+-.+++.+
T Consensus       192 lr~~l~~~~e~l~~~l~~~~~~~~qq~e~f~~~~~p~~e~~~~~l~~---~~e~l~~~l~~~~~~~~~~~~~~~~d~~~~  268 (273)
T 3s84_A          192 VRGNLRGNTEGLQKSLAELGGHLDQQVEEFRRRVEPYGENFNKALVQ---QMEQLRQKLGPHAGDVEGHLSFLEKDLRDK  268 (273)
T ss_dssp             HHHTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH---HHHHHHHHHSCC------------------
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHH---HHHHHHHHhCcchhhHHhhhhHHHHHHHHH
Confidence            33344444444444444445555555555555555555555444432   255666665    44556666666666665


Q ss_pred             hhh
Q 004698          726 FFD  728 (736)
Q Consensus       726 ~~~  728 (736)
                      .-.
T Consensus       269 ~~~  271 (273)
T 3s84_A          269 VNS  271 (273)
T ss_dssp             ---
T ss_pred             hhc
Confidence            543

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=95.95  E-value=0.0062  Score=68.56  Aligned_cols=58  Identities=21%  Similarity=0.363  Sum_probs=36.0

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      -|+|+|.+++|||+|+|.|++..  +........+|..+....  +.   .+|  ..+.|+||+|+.
T Consensus       245 kV~ivG~pnvGKSSLln~L~~~~--~a~vs~~~gTT~d~~~~~--i~---~~g--~~~~l~DTaG~~  302 (482)
T 1xzp_A          245 RMVIVGKPNVGKSTLLNRLLNED--RAIVTDIPGTTRDVISEE--IV---IRG--ILFRIVDTAGVR  302 (482)
T ss_dssp             EEEEECCHHHHTCHHHHHHHHHT--BCCCCCSSCCSSCSCCEE--EE---ETT--EEEEEEESSCCC
T ss_pred             EEEEECcCCCcHHHHHHHHHCCC--CCccCCCCCeeeeeEEEE--Ee---cCC--eEEEEEECCCcc
Confidence            58899999999999999999865  222111112232211111  10   123  568999999986

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=95.93  E-value=0.0075  Score=66.95  Aligned_cols=56  Identities=27%  Similarity=0.437  Sum_probs=35.0

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCCCcccccC--C-CCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698           73 VVSVCGRARQGKSFILNQLLGRSSGFQVAS--T-HRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA  140 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~--~-~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~  140 (736)
                      .|+|+|..++|||+|+|+|.|....+ +.+  + +.....|...|.         |  ..+.|+||+|+..
T Consensus         3 ~v~ivG~pnvGKStL~nrl~~~~~~~-v~~~~g~T~d~~~~~~~~~---------~--~~~~l~DT~G~~~   61 (439)
T 1mky_A            3 TVLIVGRPNVGKSTLFNKLVKKKKAI-VEDEEGVTRDPVQDTVEWY---------G--KTFKLVDTCGVFD   61 (439)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC---------------CCSEEEEEET---------T--EEEEEEECTTTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCce-ecCCCCCccceeeEEEEEC---------C--eEEEEEECCCccc
Confidence            68999999999999999999876211 221  1 112234555563         2  3578899999853

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=95.88  E-value=0.0036  Score=60.88  Aligned_cols=64  Identities=23%  Similarity=0.236  Sum_probs=37.8

Q ss_pred             CEEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698           70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA  140 (736)
Q Consensus        70 ~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~  140 (736)
                      +..=|+|+|..++|||+|+|+|.|....|.  +..  .|.|.-.....+   ..+|..+.++++||.|..+
T Consensus         5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~--~~~--~~~~~~~~~~~~---~~~~~~~~l~~~Dt~~~~~   68 (192)
T 2cjw_A            5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMD--SDX--EVLGEDTYERTL---MVDGESATIILLDMWENKG   68 (192)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHSCCC--------GGGCTTEEEEEE---EETTEEEEEEEECCCCC--
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCcCCcC--ccc--cccceeEEEEEE---EECCeEEEEEEEEeccCcc
Confidence            445589999999999999999997543232  111  112221111111   1246667889999998653

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=95.86  E-value=0.0035  Score=60.54  Aligned_cols=58  Identities=19%  Similarity=0.211  Sum_probs=36.0

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI  138 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~  138 (736)
                      =|.|+|+.++|||+|+|+|++..  |....   ..|.|+-.....+.   .++..+.+.|+||+|.
T Consensus        25 ki~v~G~~~~GKSsli~~l~~~~--~~~~~---~~t~~~~~~~~~~~---~~~~~~~~~i~Dt~G~   82 (191)
T 3dz8_A           25 KLLIIGNSSVGKTSFLFRYADDT--FTPAF---VSTVGIDFKVKTVY---RHEKRVKLQIWDTAGQ   82 (191)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT--TCCCE---EEEETTTEEEEEEE---ETTTTEEEEEECHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHhcCC--CCccc---CCCeeeEEEEEEEE---ECCEEEEEEEEeCCCh
Confidence            37899999999999999999754  32111   11222211111111   1345578999999994

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=95.86  E-value=1.2  Score=42.21  Aligned_cols=137  Identities=18%  Similarity=0.172  Sum_probs=72.5

Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 004698          565 RINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQ  644 (736)
Q Consensus       565 ~~~~Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~yee~~~~~~~~~~~~~~~i~~L~~k~~~~E~~~~~~~~q~~~~~  644 (736)
                      +++.|++++..+.+.+..-.+...-+++.-+++...+.           .+.....+|+.+|..++.....+.++...++
T Consensus         7 Ki~~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~-----------~~E~~~rELq~~~~~L~~~k~~Leke~~~LQ   75 (168)
T 3o0z_A            7 KLSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSIS-----------QLESLNRELQERNRILENSKSQTDKDYYQLQ   75 (168)
T ss_dssp             ---CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556666666666666555555555555555544432           2333444566666666666666666666665


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHH----H
Q 004698          645 EEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLR----L  720 (736)
Q Consensus       645 ~E~~e~~~ky~~~~~e~kalle~~~~~~e~~~e~~~~~~~~l~~e~~~~~~e~~~~~~~~~~k~~~~~~~~~~~~----~  720 (736)
                      ..+..=|+-..+.        .+.+...+.++..+...++.++.....+..    +.+.++.++-..|+.-+++-    -
T Consensus        76 a~L~qEr~~r~q~--------se~~~elq~ri~~L~~El~~~k~~~~k~~~----e~r~L~Ekl~~lEKe~a~~eid~~~  143 (168)
T 3o0z_A           76 AILEAERRDRGHD--------SEMIGDLQARITSLQEEVKHLKHNLEKVEG----ERKEAQDMLNHSEKEKNNLEIDLNY  143 (168)
T ss_dssp             HHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            5542222222211        122233334444444444444444444443    35888999999998888777    4


Q ss_pred             Hhhh
Q 004698          721 ELKV  724 (736)
Q Consensus       721 ~l~~  724 (736)
                      +||.
T Consensus       144 eLKa  147 (168)
T 3o0z_A          144 KLKS  147 (168)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4554

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=95.86  E-value=0.0051  Score=66.80  Aligned_cols=57  Identities=26%  Similarity=0.202  Sum_probs=34.4

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCC-----cccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCccc
Q 004698           74 VSVCGRARQGKSFILNQLLGRSS-----GFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAY  141 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~-----gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~  141 (736)
                      |+++|..++|||+|+|.|+|...     ...+++. ..+|...-...  +    .++    +.|+||||+...
T Consensus       163 i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~-~gtT~~~~~~~--~----~~~----~~liDtPG~~~~  224 (368)
T 3h2y_A          163 VYVVGCTNVGKSTFINRMIKEFSDETENVITTSHF-PGTTLDLIDIP--L----DEE----SSLYDTPGIINH  224 (368)
T ss_dssp             EEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECC-C----CEEEEE--S----SSS----CEEEECCCBCCT
T ss_pred             EEEecCCCCChhHHHHHHHhhhccccccceecCCC-CCeecceEEEE--e----cCC----eEEEeCCCcCcH
Confidence            67899999999999999998631     1222222 22454443321  1    112    688999999654

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=95.85  E-value=0.0065  Score=65.50  Aligned_cols=27  Identities=22%  Similarity=0.110  Sum_probs=23.1

Q ss_pred             cCCCEEEEEeeCCCCCChhHHHHHHhC
Q 004698           67 VKEPIGVVSVCGRARQGKSFILNQLLG   93 (736)
Q Consensus        67 i~~~v~vVsv~G~~rtGKS~LlN~l~~   93 (736)
                      ...+..+|+|+|..++|||+|+|.|.+
T Consensus        75 ~~~~~~~I~i~G~~G~GKSTl~~~L~~  101 (355)
T 3p32_A           75 DSGNAHRVGITGVPGVGKSTAIEALGM  101 (355)
T ss_dssp             GCCCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred             hcCCceEEEEECCCCCCHHHHHHHHHH
Confidence            345677899999999999999999863

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=95.83  E-value=0.0075  Score=66.85  Aligned_cols=59  Identities=32%  Similarity=0.483  Sum_probs=29.5

Q ss_pred             EEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      ..|+|+|..++|||+|+|+|.|..  |...+..-..|.........+     +|  ..+.|+||.|+.
T Consensus         4 ~~V~ivG~~nvGKStL~n~l~~~~--~~~v~~~~g~T~d~~~~~~~~-----~~--~~~~l~DT~G~~   62 (436)
T 2hjg_A            4 PVVAIVGRPNVGKSTIFNRIAGER--ISIVEDTPGVTRDRIYSSAEW-----LN--YDFNLIDTGGID   62 (436)
T ss_dssp             CEEEEECSTTSSHHHHHHHHEEEE--CC-----------CEEEECTT-----CS--SCCEEEC-----
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC--ceeecCCCCCccceEEEEEEE-----CC--ceEEEEECCCCC
Confidence            368999999999999999999875  332111112232221111110     12  457889999985

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=95.82  E-value=0.0084  Score=57.44  Aligned_cols=58  Identities=21%  Similarity=0.233  Sum_probs=39.5

Q ss_pred             CCEEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           69 EPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        69 ~~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      .+..-|.|+|+.++|||+|+|+|.+..  |..    -..|.|+-.....+     +  .+.+.++||+|..
T Consensus        14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~--~~~----~~~t~g~~~~~~~~-----~--~~~l~i~Dt~G~~   71 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKTTLLKQLASED--ISH----ITPTQGFNIKSVQS-----Q--GFKLNVWDIGGQR   71 (181)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCSC--CEE----EEEETTEEEEEEEE-----T--TEEEEEEECSSCG
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcCC--CCc----ccCcCCeEEEEEEE-----C--CEEEEEEECCCCH
Confidence            345568999999999999999999874  321    12355644332221     1  3678899999964

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=95.82  E-value=0.0065  Score=66.97  Aligned_cols=61  Identities=26%  Similarity=0.287  Sum_probs=36.4

Q ss_pred             CEEEEEeeCCCCCChhHHHHHHhCCC---CcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           70 PIGVVSVCGRARQGKSFILNQLLGRS---SGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        70 ~v~vVsv~G~~rtGKS~LlN~l~~~~---~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      .-.+|+|+|+.++|||||+|.|+|..   .|=-.-++. +.|...+++..|.      .  ..+.+.|+.|++
T Consensus        68 ~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~-~~t~~~~v~q~~~------~--~~ltv~D~~g~~  131 (413)
T 1tq4_A           68 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVV-EVTMERHPYKHPN------I--PNVVFWDLPGIG  131 (413)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-----CCCEEEECSS------C--TTEEEEECCCGG
T ss_pred             CCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCe-ecceeEEeccccc------c--CCeeehHhhccc
Confidence            44589999999999999999999942   221111111 2232223433321      1  136778999986

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=95.76  E-value=0.002  Score=72.14  Aligned_cols=60  Identities=25%  Similarity=0.347  Sum_probs=32.8

Q ss_pred             CEEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        70 ~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      .+. |+|+|++++|||+|+|.|+|..  +...+.....|..+...  .+   ..+|  +.+.|+||+|+.
T Consensus       224 ~~k-V~ivG~~nvGKSSLln~L~~~~--~a~v~~~~gtT~d~~~~--~i---~~~g--~~v~liDT~G~~  283 (462)
T 3geh_A          224 GLK-VAIVGRPNVGKSSLLNAWSQSD--RAIVTDLPGTTRDVVES--QL---VVGG--IPVQVLDTAGIR  283 (462)
T ss_dssp             CEE-EEEEECTTSSHHHHHHHHHHHH--BSCCSCCTTCCHHHHHH--EE---EETT--EEEEECC-----
T ss_pred             CCE-EEEEcCCCCCHHHHHHHHhCCC--cccccCCCCeeEEEEEE--EE---EECC--EEEEEEECCccc
Confidence            444 8999999999999999999864  32222222233322111  01   0123  568999999974

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=95.75  E-value=0.0093  Score=62.90  Aligned_cols=58  Identities=24%  Similarity=0.266  Sum_probs=38.8

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      |+++|..++|||+|+|+|++....|.. + .-..|.|+-.....+     +| .+.+.++||+|..
T Consensus         6 I~lvG~~~vGKSSLi~~l~~~~~~~~~-~-~~~~Ti~~~~~~~~~-----~~-~~~l~i~Dt~G~~   63 (307)
T 3r7w_A            6 LLLMGRSGSGKSSMRSIIFSNYSAFDT-R-RLGATIDVEHSHLRF-----LG-NMTLNLWDCGGQD   63 (307)
T ss_dssp             EEEECCTTSSHHHHHHHHHSCCCTGGG-G-GCCCCCSEEEEEEEE-----TT-TEEEEEEEECCSH
T ss_pred             EEEECCCCCCHHHHHHHHHhCCCCccc-c-CcCCccceEEEEEEe-----CC-ceEEEEEECCCcH
Confidence            789999999999999999987544431 1 112355554432211     23 4789999999964

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=95.75  E-value=0.011  Score=58.50  Aligned_cols=59  Identities=19%  Similarity=0.119  Sum_probs=39.6

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698           73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA  140 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~  140 (736)
                      =|.|+|..++|||+|+|+|++..  |..   ....|.|.-... .+   ..++..+.+.++||.|...
T Consensus        29 ki~vvG~~~vGKSsL~~~l~~~~--~~~---~~~~t~~~~~~~-~~---~~~~~~~~l~i~Dt~G~~~   87 (214)
T 3q3j_B           29 KLVLVGDVQCGKTAMLQVLAKDC--YPE---TYVPTVFENYTA-CL---ETEEQRVELSLWDTSGSPY   87 (214)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC--CCS---SCCCCSEEEEEE-EE---EC--CEEEEEEEEECCSGG
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC--CCC---CcCCeeeeeEEE-EE---EECCEEEEEEEEECCCCHh
Confidence            47899999999999999999765  432   122355554421 11   1245668899999999643

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=95.53  E-value=0.071  Score=61.12  Aligned_cols=60  Identities=20%  Similarity=0.232  Sum_probs=29.9

Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 004698          565 RINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKS  624 (736)
Q Consensus       565 ~~~~Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~yee~~~~~~~~~~~~~~~i~~L~~  624 (736)
                      ++..++..+..+.++.....+.+...+.++.+.+..|+..........+.+.+.+..++.
T Consensus       457 e~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  516 (597)
T 3oja_B          457 EVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKE  516 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCccccccCCHHHHHHHHHHHHHh
Confidence            344444555555555555555555556666665555543222222333444455554444

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=95.53  E-value=0.012  Score=63.10  Aligned_cols=26  Identities=23%  Similarity=0.114  Sum_probs=22.7

Q ss_pred             CCCEEEEEeeCCCCCChhHHHHHHhC
Q 004698           68 KEPIGVVSVCGRARQGKSFILNQLLG   93 (736)
Q Consensus        68 ~~~v~vVsv~G~~rtGKS~LlN~l~~   93 (736)
                      ..+..+|+|+|+.++|||+|+|.|++
T Consensus        53 ~~~~~~i~i~G~~g~GKSTl~~~l~~   78 (341)
T 2p67_A           53 CGNTLRLGVTGTPGAGKSTFLEAFGM   78 (341)
T ss_dssp             CSCSEEEEEEECTTSCHHHHHHHHHH
T ss_pred             cCCCEEEEEEcCCCCCHHHHHHHHHH
Confidence            35667899999999999999999974

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=95.48  E-value=0.03  Score=61.22  Aligned_cols=65  Identities=14%  Similarity=0.123  Sum_probs=39.9

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCCCcc-cccC---CCCCccceEEeeccc-cc--cccCCCC---ceEEEEeecCCCc
Q 004698           73 VVSVCGRARQGKSFILNQLLGRSSGF-QVAS---THRPCTKGLWLWSAP-LK--RTALDGT---EYNLLLLDSEGID  139 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~~gF-~~~~---~~~~~T~Giw~w~~p-~~--~~~~~g~---~~~v~llDteG~~  139 (736)
                      .|+|+|+.++|||||+|.|.|..  + .+++   ++...+.|...+..+ +.  ....++.   ...+.++||+|+.
T Consensus        22 ~vgiVG~pnaGKSTL~n~Ltg~~--~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~   96 (392)
T 1ni3_A           22 KTGIVGMPNVGKSTFFRAITKSV--LGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLT   96 (392)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHST--TTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGC
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC--cccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccc
Confidence            68999999999999999999854  2 2222   123346777665321 00  0000011   1247889999985

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=95.45  E-value=0.039  Score=61.46  Aligned_cols=59  Identities=20%  Similarity=0.419  Sum_probs=37.2

Q ss_pred             CEEEEEeeCCCCCChhHHHHHHhCCCCcccccCC---CCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698           70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVAST---HRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA  140 (736)
Q Consensus        70 ~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~---~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~  140 (736)
                      +..-|+|+|..++|||+|+|.|+|... +.+++.   ......+.+-|         +|  ..+.|+||+|+..
T Consensus       194 ~~~ki~ivG~~~vGKSslin~l~~~~~-~~~~~~~gtt~~~~~~~~~~---------~~--~~~~l~DT~G~~~  255 (456)
T 4dcu_A          194 EVIQFCLIGRPNVGKSSLVNAMLGEER-VIVSNVAGTTRDAVDTSFTY---------NQ--QEFVIVDTAGMRK  255 (456)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHTSTT-EEECC------CTTSEEEEE---------TT--EEEEETTGGGTTT
T ss_pred             ccceeEEecCCCCCHHHHHHHHhCCCc-cccCCCCCeEEEEEEEEEEE---------CC--ceEEEEECCCCCc
Confidence            345689999999999999999998752 222221   11111222222         23  3688999999854

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=95.39  E-value=0.019  Score=63.65  Aligned_cols=61  Identities=20%  Similarity=0.331  Sum_probs=35.1

Q ss_pred             EEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698           71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA  140 (736)
Q Consensus        71 v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~  140 (736)
                      ..-|+|+|..++|||+|+|+|+|..  |...+.....|.....  .++.   .+|  ..+.|+||+|+..
T Consensus       175 ~~ki~lvG~~nvGKSSLin~l~~~~--~~~~~~~~gtT~d~~~--~~~~---~~~--~~~~l~DT~G~~~  235 (436)
T 2hjg_A          175 VIQFCLIGRPNVGKSSLVNAMLGEE--RVIVSNVAGTTRDAVD--TSFT---YNQ--QEFVIVDTAGMRK  235 (436)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHTST--TEEEC---------CC--EEEE---ETT--EEEEETTHHHHTC
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCCC--ceeecCCCCceeeeeE--EEEE---ECC--eEEEEEECCCcCc
Confidence            3458899999999999999999875  3321112223333211  1111   123  3588999999853

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=95.38  E-value=0.013  Score=56.74  Aligned_cols=57  Identities=19%  Similarity=0.107  Sum_probs=36.3

Q ss_pred             CEEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        70 ~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      +-.-|.|+|+.++|||+|+|+|++..  |.-   . ..|.|+-.....       ...+.+.++||+|..
T Consensus        28 ~~~ki~v~G~~~vGKSsLi~~l~~~~--~~~---~-~~t~~~~~~~~~-------~~~~~~~i~Dt~G~~   84 (192)
T 2b6h_A           28 KQMRILMVGLDAAGKTTILYKLKLGE--IVT---T-IPTIGFNVETVE-------YKNICFTVWDVGGQD   84 (192)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHCSSC--CEE---E-EEETTEEEEEEE-------ETTEEEEEEECC---
T ss_pred             CccEEEEECCCCCCHHHHHHHHHhCC--ccc---c-CCcCceeEEEEE-------ECCEEEEEEECCCCH
Confidence            34459999999999999999998765  431   1 225553222111       124788999999974

>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=95.34  E-value=1.9  Score=40.49  Aligned_cols=34  Identities=18%  Similarity=0.066  Sum_probs=20.8

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhH
Q 004698          661 AKAALEKAAIVQERTSKEMQQREDVLREEFSSTL  694 (736)
Q Consensus       661 ~kalle~~~~~~e~~~e~~~~~~~~l~~e~~~~~  694 (736)
                      .++.+++.+...+..+.++...++.+++++..++
T Consensus       109 ~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK  142 (154)
T 2ocy_A          109 EKYAIEILNKRLTEQLREKDTLLDTLTLQLKNLK  142 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455556666666666666666666666666554

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=95.31  E-value=0.021  Score=63.08  Aligned_cols=63  Identities=21%  Similarity=0.275  Sum_probs=32.0

Q ss_pred             EEeeCCCCCChhHHHHHHhCCC---CcccccCC-CCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698           74 VSVCGRARQGKSFILNQLLGRS---SGFQVAST-HRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA  140 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~---~gF~~~~~-~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~  140 (736)
                      |+|+|+.++|||+|+|.|+|..   .|.. +.. ..+.|.++-..+..+.   .++....+-+.||.|++.
T Consensus        34 I~lvG~sGaGKSTLln~L~g~~~~~~~~~-~~~~~~~~t~~~~~i~~v~q---~~~~~~~Ltv~Dt~g~~~  100 (418)
T 2qag_C           34 LMVVGESGLGKSTLINSLFLTDLYSPEYP-GPSHRIKKTVQVEQSKVLIK---EGGVQLLLTIVDTPGFGD  100 (418)
T ss_dssp             EEEECCTTSSHHHHHHHHTTCCCCCCCCC-SCC-----CCEEEEEECC---------CEEEEEEECC----
T ss_pred             EEEECCCCCcHHHHHHHHhCCCCCCCCCC-CcccCCccceeeeeEEEEEe---cCCcccceeeeechhhhh
Confidence            4999999999999999999864   2210 000 0122334322111111   123335688899999864

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=95.28  E-value=0.0048  Score=61.09  Aligned_cols=61  Identities=15%  Similarity=0.193  Sum_probs=36.6

Q ss_pred             EEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        71 v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      -.=|.|+|..++|||+|+|+|++..  |....   ..|.|+-.....+.   .++..+.+.++||+|..
T Consensus        15 ~~ki~v~G~~~~GKSsli~~~~~~~--~~~~~---~~t~~~~~~~~~~~---~~~~~~~~~i~Dt~G~~   75 (221)
T 3gj0_A           15 QFKLVLVGDGGTGKTTFVKRHLTGE--FEKKY---VATLGVEVHPLVFH---TNRGPIKFNVWDTAGQE   75 (221)
T ss_dssp             EEEEEEEECTTSSHHHHHTTBHHHH--HTCEE---ETTTTEEEEEEEEE---ETTEEEEEEEEEECSGG
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCC--CCCCC---CCccceeEEEEEEE---ECCEEEEEEEEeCCChH
Confidence            3458899999999999999966432  21110   11223222222111   13455789999999964

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=95.28  E-value=0.028  Score=63.90  Aligned_cols=68  Identities=18%  Similarity=0.206  Sum_probs=36.7

Q ss_pred             CEEEEEeeCCCCCChhHHHHHHhCCCCcccccCC----------C-----CCccceEEeeccccccccCCCCceEEEEee
Q 004698           70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVAST----------H-----RPCTKGLWLWSAPLKRTALDGTEYNLLLLD  134 (736)
Q Consensus        70 ~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~----------~-----~~~T~Giw~w~~p~~~~~~~g~~~~v~llD  134 (736)
                      ...-|+|+|..++|||+|+|+|++....+...+.          +     ...+.||-+-......   +...+.+.|+|
T Consensus        12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~---~~~~~~i~liD   88 (529)
T 2h5e_A           12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQF---PYHDCLVNLLD   88 (529)
T ss_dssp             TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEE---EETTEEEEEEC
T ss_pred             CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEE---EECCeEEEEEE
Confidence            4567999999999999999999964322211000          0     0124455433322211   12347789999


Q ss_pred             cCCCcc
Q 004698          135 SEGIDA  140 (736)
Q Consensus       135 teG~~~  140 (736)
                      |+|..+
T Consensus        89 TPG~~d   94 (529)
T 2h5e_A           89 TPGHED   94 (529)
T ss_dssp             CCCSTT
T ss_pred             CCCChh
Confidence            999743

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=95.17  E-value=0.019  Score=62.85  Aligned_cols=64  Identities=17%  Similarity=0.153  Sum_probs=33.6

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCCCcccccC----CCCCccceEEeeccc-cc----cccCC-CCceEEEEeecCCCc
Q 004698           73 VVSVCGRARQGKSFILNQLLGRSSGFQVAS----THRPCTKGLWLWSAP-LK----RTALD-GTEYNLLLLDSEGID  139 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~----~~~~~T~Giw~w~~p-~~----~~~~~-g~~~~v~llDteG~~  139 (736)
                      -|+|+|+.++|||+|+|.|.|..  +.+++    |..| +.|...+..+ +.    ...|. .-...+.|+||+|+.
T Consensus        24 kvgIVG~pnvGKSTL~n~Ltg~~--~~~~~~p~tTi~p-~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~   97 (396)
T 2ohf_A           24 KIGIVGLPNVGKSTFFNVLTNSQ--ASAENFPFCTIDP-NESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLV   97 (396)
T ss_dssp             CEEEECCSSSSHHHHHHHHHC---------------CC-SEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC--
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC--ccccCCCccccCc-eeEEEEECCccceeeccccCcccccccccEEEECCCcc
Confidence            37899999999999999999875  33332    2333 3455444211 00    00000 001358999999974

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=95.16  E-value=0.016  Score=58.05  Aligned_cols=58  Identities=22%  Similarity=0.385  Sum_probs=36.9

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      |.|+|..++|||.|++++.+..  |...   -..|.|+-.....+.   .++..+.+-+.||.|..
T Consensus        16 ivlvGd~~VGKTsLi~r~~~~~--f~~~---~~~Tig~d~~~k~~~---~~~~~v~l~iwDtaGqe   73 (216)
T 4dkx_A           16 LVFLGEQSVGKTSLITRFMYDS--FDNT---YQATIGIDFLSKTMY---LEDRTIRLQLWDTAGLE   73 (216)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSC--CC-------------CEEEEEE---CSSCEEEEEEECCSCTT
T ss_pred             EEEECcCCcCHHHHHHHHHhCC--CCCC---cCCccceEEEEEEEE---ecceEEEEEEEECCCch
Confidence            6789999999999999998655  6432   234667655444332   35667889999999964

>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=95.13  E-value=2.2  Score=40.04  Aligned_cols=133  Identities=11%  Similarity=0.115  Sum_probs=70.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698          521 RSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRK  600 (736)
Q Consensus       521 es~e~e~~~lk~~Le~~e~~~~e~~k~~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~  600 (736)
                      ..+++++..++..++.....+..++ .+.+.+..+......+..+...|..++..-..+....+.....+.+|+.++...
T Consensus        16 s~LeD~L~~~R~el~~~~~ri~~lE-~~r~~~~~l~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTas   94 (154)
T 2ocy_A           16 SHLEEQLNKSLKTIASQKAAIENYN-QLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTAS   94 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTH-HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555555555544333333222 122334444444455666666666666666666666666667777777777766


Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698          601 YDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVA  657 (736)
Q Consensus       601 yee~~~~~~~~~~~~~~~i~~L~~k~~~~E~~~~~~~~q~~~~~~E~~e~~~ky~~~  657 (736)
                      .=+.+|.-   --....+-..++.|...+++++.+....+++.+.++.++|+-.+.+
T Consensus        95 LFeEAN~M---Va~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~v~~~m  148 (154)
T 2ocy_A           95 LFDEANNM---VADARKEKYAIEILNKRLTEQLREKDTLLDTLTLQLKNLKKVMHSL  148 (154)
T ss_dssp             HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred             HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            53333322   1122333334445555555566666777777777776666654433

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=95.10  E-value=0.013  Score=60.78  Aligned_cols=22  Identities=32%  Similarity=0.492  Sum_probs=20.4

Q ss_pred             EEEeeCCCCCChhHHHHHHhCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~   94 (736)
                      .|+|+|+.|+|||||||.|+|.
T Consensus         4 ~v~lvG~nGaGKSTLln~L~g~   25 (270)
T 3sop_A            4 NIMVVGQSGLGKSTLVNTLFKS   25 (270)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999984

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=95.09  E-value=0.014  Score=62.76  Aligned_cols=57  Identities=21%  Similarity=0.223  Sum_probs=38.5

Q ss_pred             EEEEEeeCCCCCChhHHHHHHhCCCCcccccC---CCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVAS---THRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        71 v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~---~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      ++-|+++|..++|||+|+|.|.+..  +.+.+   ++...+.|++-+.        +  ...++|+||+|+.
T Consensus       158 la~V~lvG~~nvGKSTLln~L~~~~--~~i~~~~ftTl~p~~g~v~~~--------~--~~~~~l~DtPG~i  217 (342)
T 1lnz_A          158 LADVGLVGFPSVGKSTLLSVVSSAK--PKIADYHFTTLVPNLGMVETD--------D--GRSFVMADLPGLI  217 (342)
T ss_dssp             CCCEEEESSTTSSHHHHHHHSEEEC--CEESSTTSSCCCCCEEEEECS--------S--SCEEEEEEHHHHH
T ss_pred             cCeeeeeCCCCCCHHHHHHHHHcCC--CccccCCccccCceEEEEEeC--------C--CceEEEecCCCCc
Confidence            4569999999999999999999764  33321   2222344554331        1  1468899999974

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=95.07  E-value=0.017  Score=65.21  Aligned_cols=24  Identities=21%  Similarity=0.250  Sum_probs=20.7

Q ss_pred             CCEEEEEeeCCCCCChhHHHHHHh
Q 004698           69 EPIGVVSVCGRARQGKSFILNQLL   92 (736)
Q Consensus        69 ~~v~vVsv~G~~rtGKS~LlN~l~   92 (736)
                      .+..+|+|+|++++|||||+|.|+
T Consensus        99 ~~~~vI~ivG~~GvGKTTl~~kLA  122 (504)
T 2j37_W           99 GKQNVIMFVGLQGSGKTTTCSKLA  122 (504)
T ss_dssp             S--EEEEEECSTTSSHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHH
Confidence            356789999999999999999998

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=95.06  E-value=0.023  Score=62.70  Aligned_cols=27  Identities=19%  Similarity=0.209  Sum_probs=22.7

Q ss_pred             CCEEEEEeeCCCCCChhHHHHHHhCCC
Q 004698           69 EPIGVVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        69 ~~v~vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      +-+.-|+|+|+.|+|||||||.|+|..
T Consensus        40 Gei~~vaLvG~nGaGKSTLln~L~G~~   66 (427)
T 2qag_B           40 GFCFNILCVGETGLGKSTLMDTLFNTK   66 (427)
T ss_dssp             CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence            333339999999999999999999974

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=94.93  E-value=0.0073  Score=59.39  Aligned_cols=31  Identities=35%  Similarity=0.538  Sum_probs=24.0

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCC---CcccccCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRS---SGFQVAST  103 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~---~gF~~~~~  103 (736)
                      +|+|+||.|+|||||++.|+|..   .|+.+.++
T Consensus         6 ~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~t   39 (198)
T 1lvg_A            6 PVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHT   39 (198)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEE
T ss_pred             EEEEECCCCCCHHHHHHHHHhhCchhceeeeeee
Confidence            68899999999999999998742   34444443

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=94.90  E-value=0.032  Score=58.46  Aligned_cols=61  Identities=23%  Similarity=0.316  Sum_probs=39.2

Q ss_pred             EEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698           71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA  140 (736)
Q Consensus        71 v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~  140 (736)
                      ..-|.|+|..++|||+|+|++.+..  |.  ....+.|...+...  +   ..+|..+.+.|+||+|...
T Consensus       155 ~~~i~i~G~~~~GKssli~~~~~~~--~~--~~~~~t~~~~~~~~--~---~~~~~~~~~~l~Dt~G~~~  215 (332)
T 2wkq_A          155 LIKCVVVGDGAVGKTCLLISYTTNA--FP--GEYIPTVFDNYSAN--V---MVDGKPVNLGLWDTAGLED  215 (332)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHSC--CC--CSCCCCSEEEEEEE--E---EETTEEEEEEEEEECCCGG
T ss_pred             eeEEEEECCCCCChHHHHHHHHhCC--CC--cccCCcccceeEEE--E---EECCEEEEEEEEeCCCchh
Confidence            3458899999999999999999654  31  11223232222211  1   1246667788999999754

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=94.83  E-value=0.037  Score=62.12  Aligned_cols=28  Identities=29%  Similarity=0.281  Sum_probs=22.8

Q ss_pred             CCCEEEEEeeCCCCCChhHHHHHHhCCC
Q 004698           68 KEPIGVVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        68 ~~~v~vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      ..+..=|+|+|...+|||+|+|+|++..
T Consensus        30 ~k~~~ki~iiG~~~~GKSTLi~~Ll~~~   57 (483)
T 3p26_A           30 ALPHLSFVVLGHVDAGKSTLMGRLLYDL   57 (483)
T ss_dssp             SCCEEEEEEESCGGGTHHHHHHHHHHHT
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHhc
Confidence            3444457799999999999999998663

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=94.82  E-value=0.02  Score=60.27  Aligned_cols=21  Identities=33%  Similarity=0.479  Sum_probs=19.0

Q ss_pred             EEeeCCCCCChhHHHHHHhCC
Q 004698           74 VSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~   94 (736)
                      |+|+|+.++|||+|+|.|+|.
T Consensus        21 I~lvG~nG~GKSTLl~~L~g~   41 (301)
T 2qnr_A           21 LMVVGESGLGKSTLINSLFLT   41 (301)
T ss_dssp             EEEEEETTSSHHHHHHHHHC-
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            499999999999999999986

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=94.79  E-value=0.011  Score=57.03  Aligned_cols=23  Identities=22%  Similarity=0.388  Sum_probs=21.0

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      +|+|+||.++|||||++.|++..
T Consensus         7 ~i~i~GpsGsGKSTL~~~L~~~~   29 (180)
T 1kgd_A            7 TLVLLGAHGVGRRHIKNTLITKH   29 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            78999999999999999998753

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=93.80  E-value=0.005  Score=60.04  Aligned_cols=59  Identities=25%  Similarity=0.192  Sum_probs=36.8

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698           73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA  140 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~  140 (736)
                      -|.|+|..++|||+|+|+|++..  |.-.  . ..|.|-... ..+   ..+|..+.+.++||+|...
T Consensus        32 ki~v~G~~~~GKSsli~~l~~~~--~~~~--~-~~t~~~~~~-~~~---~~~~~~~~l~i~Dt~G~~~   90 (204)
T 3th5_A           32 KCVVVGDGAVGKTCLLISYTTNA--FPGE--Y-IPTVFDNYS-ANV---MVDGKPVNLGLWDTAGQED   90 (204)
Confidence            48899999999999999998654  3211  1 122222111 111   1245557778999999643

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=94.76  E-value=0.4  Score=54.85  Aligned_cols=24  Identities=29%  Similarity=0.304  Sum_probs=8.9

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHH
Q 004698          572 ENISLREKSSSLSKTVDSLKNEIS  595 (736)
Q Consensus       572 k~~sl~~r~~~L~~~le~lk~e~~  595 (736)
                      ....+++.+..+...+..++.+..
T Consensus       450 ~~e~l~~e~~~~~~~i~~l~~~~~  473 (597)
T 3oja_B          450 GNEQLEAEVNELRAEVQQLTNEQI  473 (597)
T ss_dssp             ----CCHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444444444444443

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=94.73  E-value=0.026  Score=64.24  Aligned_cols=64  Identities=23%  Similarity=0.277  Sum_probs=37.1

Q ss_pred             EEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeecccc-----ccccCCCCceEEEEeecCCCc
Q 004698           71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPL-----KRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        71 v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~-----~~~~~~g~~~~v~llDteG~~  139 (736)
                      -.=|+++|..++|||+|+|.|.+..  |.   .....|.|+-+...-.     .....++..+.+.+.||+|..
T Consensus        41 ~~kV~lvG~~~vGKSSLl~~l~~~~--~~---~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e  109 (535)
T 3dpu_A           41 EIKVHLIGDGMAGKTSLLKQLIGET--FD---PKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQE  109 (535)
T ss_dssp             EEEEEEESSSCSSHHHHHHHHHC----------------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCC
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCC--CC---CCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHH
Confidence            3458899999999999999999875  43   1223355554442210     000123456889999999954

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=94.72  E-value=0.028  Score=59.10  Aligned_cols=23  Identities=26%  Similarity=0.341  Sum_probs=21.1

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      +++++|+.++|||+|||.|.|..
T Consensus       171 iv~l~G~sG~GKSTll~~l~g~~  193 (301)
T 1u0l_A          171 ISTMAGLSGVGKSSLLNAINPGL  193 (301)
T ss_dssp             EEEEECSTTSSHHHHHHHHSTTC
T ss_pred             eEEEECCCCCcHHHHHHHhcccc
Confidence            78999999999999999999853

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=94.70  E-value=0.038  Score=59.93  Aligned_cols=21  Identities=33%  Similarity=0.472  Sum_probs=19.7

Q ss_pred             EEeeCCCCCChhHHHHHHhCC
Q 004698           74 VSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~   94 (736)
                      |+|+|++++|||+|+|.|.+.
T Consensus         4 v~IVG~pnvGKSTL~n~L~~~   24 (368)
T 2dby_A            4 VGIVGLPNVGKSTLFNALTRA   24 (368)
T ss_dssp             EEEECCSSSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            789999999999999999975

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=94.70  E-value=0.073  Score=58.20  Aligned_cols=26  Identities=23%  Similarity=0.464  Sum_probs=22.5

Q ss_pred             CCEEEEEeeCCCCCChhHHHHHHhCC
Q 004698           69 EPIGVVSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        69 ~~v~vVsv~G~~rtGKS~LlN~l~~~   94 (736)
                      .|-.-|+++|..++|||+|+|.|.|.
T Consensus         6 ~~~~~I~vvG~~~~GKSTLi~~L~~~   31 (403)
T 3sjy_A            6 QPEVNIGVVGHVDHGKTTLVQAITGI   31 (403)
T ss_dssp             CCCCEEEEECSTTSSHHHHHHHHHSC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCc
Confidence            34456899999999999999999985

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=94.68  E-value=0.04  Score=63.57  Aligned_cols=104  Identities=17%  Similarity=0.293  Sum_probs=52.2

Q ss_pred             CEEEEEeeCCCCCChhHHHHHHhCCCCccc---ccCCCC-----CccceEEeeccccc--cccCCCCceEEEEeecCCCc
Q 004698           70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQ---VASTHR-----PCTKGLWLWSAPLK--RTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        70 ~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~---~~~~~~-----~~T~Giw~w~~p~~--~~~~~g~~~~v~llDteG~~  139 (736)
                      .+--|+|+|...+|||+|+|+|++....+.   ++.+.-     -.+.||=+......  ...++|..+.+-|+||+|..
T Consensus         5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~   84 (600)
T 2ywe_A            5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHV   84 (600)
T ss_dssp             GEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcH
Confidence            466789999999999999999985321111   111100     11244443322111  11235677889999999975


Q ss_pred             ccCCCCccchHHHHHhhhccceEEEccCCCCchHHhhhh
Q 004698          140 AYDQTGTYSTQIFSLAVLLSSMFIYNQMGGIDESAIDRL  178 (736)
Q Consensus       140 ~~~~~~~~d~~IFaLa~LLSS~~IyN~~g~i~e~~l~~L  178 (736)
                      ++..     ...-+|...=.-++||.....+..+.+..+
T Consensus        85 dF~~-----ev~r~l~~aD~aILVVDa~~gv~~qt~~~~  118 (600)
T 2ywe_A           85 DFSY-----EVSRALAACEGALLLIDASQGIEAQTVANF  118 (600)
T ss_dssp             GGHH-----HHHHHHHTCSEEEEEEETTTBCCHHHHHHH
T ss_pred             hHHH-----HHHHHHHhCCEEEEEEECCCCccHHHHHHH
Confidence            4311     223344443344566666655555544443

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=94.65  E-value=0.048  Score=64.07  Aligned_cols=25  Identities=16%  Similarity=0.230  Sum_probs=22.6

Q ss_pred             CCEEEEEeeCCCCCChhHHHHHHhC
Q 004698           69 EPIGVVSVCGRARQGKSFILNQLLG   93 (736)
Q Consensus        69 ~~v~vVsv~G~~rtGKS~LlN~l~~   93 (736)
                      ..+..|+|+|..++|||+|+|+|++
T Consensus         8 ~~~~~I~IvG~~~aGKSTL~~~Ll~   32 (693)
T 2xex_A            8 EKTRNIGIMAHIDAGKTTTTERILY   32 (693)
T ss_dssp             TTEEEEEEECCGGGTHHHHHHHHHH
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHH
Confidence            4577899999999999999999994

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=94.60  E-value=0.013  Score=58.06  Aligned_cols=24  Identities=29%  Similarity=0.476  Sum_probs=21.1

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRSS   96 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~~   96 (736)
                      +|+|+||.++|||+|+|.|++...
T Consensus        21 ~ivl~GPSGaGKsTL~~~L~~~~~   44 (197)
T 3ney_A           21 TLVLIGASGVGRSHIKNALLSQNP   44 (197)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             EEEEECcCCCCHHHHHHHHHhhCC
Confidence            578999999999999999997643

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=94.54  E-value=0.044  Score=63.22  Aligned_cols=104  Identities=17%  Similarity=0.293  Sum_probs=48.5

Q ss_pred             CEEEEEeeCCCCCChhHHHHHHhCCCCccc---ccCCCC-----CccceEEeeccccc--cccCCCCceEEEEeecCCCc
Q 004698           70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQ---VASTHR-----PCTKGLWLWSAPLK--RTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        70 ~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~---~~~~~~-----~~T~Giw~w~~p~~--~~~~~g~~~~v~llDteG~~  139 (736)
                      .+--|+|+|...+|||+|+++|++....+.   ++.+..     -.+.||=+-.....  ....+|..+.+-|+||+|..
T Consensus         3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~   82 (599)
T 3cb4_D            3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV   82 (599)
T ss_dssp             TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence            456689999999999999999986432221   111110     11345544322111  11225677889999999974


Q ss_pred             ccCCCCccchHHHHHhhhccceEEEccCCCCchHHhhhh
Q 004698          140 AYDQTGTYSTQIFSLAVLLSSMFIYNQMGGIDESAIDRL  178 (736)
Q Consensus       140 ~~~~~~~~d~~IFaLa~LLSS~~IyN~~g~i~e~~l~~L  178 (736)
                      ++..     ...-+|...=.-++||.....+..+.+..+
T Consensus        83 dF~~-----ev~~~l~~aD~aILVVDa~~gv~~qt~~~~  116 (599)
T 3cb4_D           83 DFSY-----EVSRSLAACEGALLVVDAGQGVEAQTLANC  116 (599)
T ss_dssp             GGHH-----HHHHHHHHCSEEEEEEETTTCCCTHHHHHH
T ss_pred             HHHH-----HHHHHHHHCCEEEEEEECCCCCCHHHHHHH
Confidence            3221     223334443344566666555554444433

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=94.49  E-value=0.024  Score=64.53  Aligned_cols=24  Identities=17%  Similarity=0.207  Sum_probs=21.5

Q ss_pred             CEEEEEeeCCCCCChhHHHHHHhC
Q 004698           70 PIGVVSVCGRARQGKSFILNQLLG   93 (736)
Q Consensus        70 ~v~vVsv~G~~rtGKS~LlN~l~~   93 (736)
                      .+-.|+|+|..++|||+|+|.|++
T Consensus        12 ~~r~IaIiG~~~aGKTTL~~~Ll~   35 (528)
T 3tr5_A           12 MRRTFAIISHPDAGKTTLTEKLLL   35 (528)
T ss_dssp             TEEEEEEEECTTSSHHHHHHHHHH
T ss_pred             cCCEEEEECCCCCcHHHHHHHHHh
Confidence            466799999999999999999973

>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1

Probab=94.46  E-value=0.44  Score=44.66  Aligned_cols=110  Identities=18%  Similarity=0.224  Sum_probs=68.6

Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 004698          566 INNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQE  645 (736)
Q Consensus       566 ~~~Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~yee~~~~~~~~~~~~~~~i~~L~~k~~~~E~~~~~~~~q~~~~~~  645 (736)
                      +..++-+++.+++|+.....+|+.+.+.                  +++...-...|.++...-++++..+..++.-++.
T Consensus         5 i~llEeeLer~eerl~~a~~kLeeaek~------------------adE~eR~~k~lE~r~~~deEr~~~lE~qLkeak~   66 (147)
T 2b9c_A            5 IQLVEEELDRAQERLATALQKLEEAEKA------------------ADESERGMKVIESRAQKDEEKMEIQEIQLKEAKH   66 (147)
T ss_dssp             ------CCGGGGTTTTHHHHHHHHHHHH------------------HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHH
Confidence            3444555555555555554444444333                  3333344445667777778888888888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhH
Q 004698          646 EVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTL  694 (736)
Q Consensus       646 E~~e~~~ky~~~~~e~kalle~~~~~~e~~~e~~~~~~~~l~~e~~~~~  694 (736)
                      -+.+=-+||+.+-.+. +.++......+-+.+.+..+...|+++++.+-
T Consensus        67 ~aeeadrKyeE~~RKl-~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~  114 (147)
T 2b9c_A           67 IAEDADRKYEEVARKL-VIIESDLERAEERAELSEGKCAELEEELKTVT  114 (147)
T ss_dssp             HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888899999988877 55666666666666666666666666666543

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=94.39  E-value=0.012  Score=62.13  Aligned_cols=22  Identities=27%  Similarity=0.386  Sum_probs=20.2

Q ss_pred             EEEeeCCCCCChhHHHHHHhCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~   94 (736)
                      +++|+|+.++|||||+|.|+|.
T Consensus       175 ~~~lvG~sG~GKSTLln~L~g~  196 (307)
T 1t9h_A          175 TTVFAGQSGVGKSSLLNAISPE  196 (307)
T ss_dssp             EEEEEESHHHHHHHHHHHHCC-
T ss_pred             EEEEECCCCCCHHHHHHHhccc
Confidence            7899999999999999999985

>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=94.37  E-value=1  Score=41.19  Aligned_cols=64  Identities=13%  Similarity=0.152  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698          509 IGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGE  572 (736)
Q Consensus       509 i~~e~~~L~~k~es~e~e~~~lk~~Le~~e~~~~e~~k~~e~~In~lkk~~e~~e~~~~~Le~k  572 (736)
                      ...++.+++..+.+++.+++.++.+-...+..+.+.+.+|+..+.+.+..+..++.++..+..+
T Consensus        34 ~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e   97 (129)
T 3tnu_B           34 TKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQD   97 (129)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            3567888888899999999888888888888888888888887777644444444444433333

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=94.37  E-value=0.089  Score=57.63  Aligned_cols=28  Identities=18%  Similarity=0.299  Sum_probs=24.6

Q ss_pred             CCCEEEEEeeCCCCCChhHHHHHHhCCC
Q 004698           68 KEPIGVVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        68 ~~~v~vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      ..+...|+|+|...+|||+|+|+|.|..
T Consensus         7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~   34 (410)
T 1kk1_A            7 RQAEVNIGMVGHVDHGKTTLTKALTGVW   34 (410)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHTCC
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHhCCc
Confidence            4567789999999999999999999763

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=94.30  E-value=0.031  Score=61.61  Aligned_cols=57  Identities=28%  Similarity=0.251  Sum_probs=38.0

Q ss_pred             EEEEEeeCCCCCChhHHHHHHhCCCCcccccC---CCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           71 IGVVSVCGRARQGKSFILNQLLGRSSGFQVAS---THRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        71 v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~---~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      ..+|+|+|+.++|||||||.|.+..  ..+..   +....+.|+..+.         + ...+.+.||+|+.
T Consensus       157 g~~VgLVG~~gAGKSTLL~~Lsg~~--~~i~~~~ftTl~p~~G~V~~~---------~-~~~~~l~DtpGli  216 (416)
T 1udx_A          157 IADVGLVGYPNAGKSSLLAAMTRAH--PKIAPYPFTTLSPNLGVVEVS---------E-EERFTLADIPGII  216 (416)
T ss_dssp             SCSEEEECCGGGCHHHHHHHHCSSC--CEECCCTTCSSCCEEEEEECS---------S-SCEEEEEECCCCC
T ss_pred             CCEEEEECCCCCcHHHHHHHHHcCC--ccccCcccceecceeeEEEec---------C-cceEEEEeccccc
Confidence            4579999999999999999999874  22221   1122345554332         1 2457889999974

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=94.25  E-value=0.025  Score=55.79  Aligned_cols=28  Identities=25%  Similarity=0.292  Sum_probs=24.0

Q ss_pred             CCCEEEEEeeCCCCCChhHHHHHHhCCC
Q 004698           68 KEPIGVVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        68 ~~~v~vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      ..+-.+|+|+|+.++|||||++.|.|..
T Consensus        19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~   46 (208)
T 3c8u_A           19 QPGRQLVALSGAPGSGKSTLSNPLAAAL   46 (208)
T ss_dssp             CCSCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            3456789999999999999999998753

>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1

Probab=94.16  E-value=0.93  Score=42.41  Aligned_cols=40  Identities=23%  Similarity=0.227  Sum_probs=29.9

Q ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698          568 NLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTK  607 (736)
Q Consensus       568 ~Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~yee~~~~  607 (736)
                      .|+..-..-++++..|..+|...+....+-.++|++...+
T Consensus        42 ~lE~r~~~deEr~~~lE~qLkeak~~aeeadrKyeE~~RK   81 (147)
T 2b9c_A           42 VIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARK   81 (147)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            4555556677888888888888888888888888765443

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=94.16  E-value=0.057  Score=60.67  Aligned_cols=96  Identities=14%  Similarity=0.199  Sum_probs=47.7

Q ss_pred             EEEEeeCCCCCChhHHHHHHhCCCC-----cccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcccCCCCc
Q 004698           72 GVVSVCGRARQGKSFILNQLLGRSS-----GFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYDQTGT  146 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~~~~~-----gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~~~~~~  146 (736)
                      ..|+|+|...+|||+|+|+|.|...     .+... .....|..+-.+..++     +  ...+.|+||+|...+.    
T Consensus        20 ~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e-~~~GiTi~~~~~~~~~-----~--~~~i~iiDtPGh~~~~----   87 (482)
T 1wb1_A           20 INLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPES-QKRGITIDIGFSAFKL-----E--NYRITLVDAPGHADLI----   87 (482)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHTTC---------------------CCCEEEE-----T--TEEEEECCCSSHHHHH----
T ss_pred             CEEEEECCCCChHHHHHHHHHCCCccccccccccc-ccCccEEecceEEEEE-----C--CEEEEEEECCChHHHH----
Confidence            3589999999999999999998651     11110 0011222221111111     1  2578899999963211    


Q ss_pred             cchHHHHHhhhccceEEEccCCCCchHHhhhhHH
Q 004698          147 YSTQIFSLAVLLSSMFIYNQMGGIDESAIDRLSL  180 (736)
Q Consensus       147 ~d~~IFaLa~LLSS~~IyN~~g~i~e~~l~~L~~  180 (736)
                       ...+..++..=.-++|+.....+..+..+++.+
T Consensus        88 -~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~  120 (482)
T 1wb1_A           88 -RAVVSAADIIDLALIVVDAKEGPKTQTGEHMLI  120 (482)
T ss_dssp             -HHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHH
T ss_pred             -HHHHHHHhhCCEEEEEEecCCCccHHHHHHHHH
Confidence             122222222112245565555555666665543

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*

Probab=94.15  E-value=0.39  Score=52.94  Aligned_cols=11  Identities=27%  Similarity=0.380  Sum_probs=0.0

Q ss_pred             HHHhhHHHHHH
Q 004698          689 EFSSTLAEKEE  699 (736)
Q Consensus       689 e~~~~~~e~~~  699 (736)
                      .+++.+.++..
T Consensus       217 ~fKsq~q~~~~  227 (562)
T 3ghg_A          217 NFKSQLQKVPP  227 (562)
T ss_dssp             -----------
T ss_pred             hhhhhccccCH
Confidence            34444444333

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=94.15  E-value=0.038  Score=60.48  Aligned_cols=26  Identities=23%  Similarity=0.243  Sum_probs=22.8

Q ss_pred             CCEEEEEeeCCCCCChhHHHHHHhCC
Q 004698           69 EPIGVVSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        69 ~~v~vVsv~G~~rtGKS~LlN~l~~~   94 (736)
                      .+..-|+|+|...+|||+|+|+|++.
T Consensus         9 ~~~~~I~iiG~~~~GKSTLi~~L~~~   34 (405)
T 2c78_A            9 KPHVNVGTIGHVDHGKTTLTAALTYV   34 (405)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEEEcCCCCCHHHHHHHHHhh
Confidence            45667999999999999999999873

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=94.12  E-value=0.088  Score=58.19  Aligned_cols=27  Identities=30%  Similarity=0.491  Sum_probs=23.3

Q ss_pred             CCEEEEEeeCCCCCChhHHHHHHhCCC
Q 004698           69 EPIGVVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        69 ~~v~vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      .+..-|+|+|...+|||+|+|+|++..
T Consensus        22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~   48 (434)
T 1zun_B           22 KEMLRFLTCGNVDDGKSTLIGRLLHDS   48 (434)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHhhc
Confidence            456678999999999999999998654

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=94.12  E-value=1.4  Score=38.48  Aligned_cols=26  Identities=4%  Similarity=0.100  Sum_probs=10.5

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHH
Q 004698          561 DYTSRINNLQGENISLREKSSSLSKT  586 (736)
Q Consensus       561 ~~e~~~~~Le~k~~sl~~r~~~L~~~  586 (736)
                      .|.-++..|..+.+++.+|...+..+
T Consensus         6 ~iKkKm~~lk~e~e~a~d~ae~~e~~   31 (101)
T 3u59_A            6 AIKKKMQMLKLDKENAIDRAEQAEAD   31 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333344444444444444444333

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=94.07  E-value=0.0089  Score=68.06  Aligned_cols=61  Identities=23%  Similarity=0.375  Sum_probs=36.4

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcccC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYD  142 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~~  142 (736)
                      +|+|+|...+|||+|+|+|.+..  |.... ....|..+..+..++    ++|  ..+.|+||+|...+.
T Consensus         6 kV~IvG~~~vGKTSLl~~L~~~~--~~~~~-~~giT~~i~~~~v~~----~~g--~~i~~iDTPGhe~f~   66 (537)
T 3izy_P            6 VVTIMGHVDHGKTTLLDKLRKTQ--VAAME-AGGITQHIGAFLVSL----PSG--EKITFLDTPGHAAFS   66 (537)
T ss_dssp             BCEEEESTTTTHHHHHHHHHHHH--HHHSS-SCCBCCCTTSCCBCS----SCS--SCCBCEECSSSCCTT
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC--ccccc-CCceeEEEeEEEEEe----CCC--CEEEEEECCChHHHH
Confidence            48999999999999999998754  32221 111222222222111    123  247789999975443

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=94.04  E-value=0.053  Score=56.99  Aligned_cols=20  Identities=35%  Similarity=0.504  Sum_probs=19.1

Q ss_pred             EEEeeCCCCCChhHHHHHHh
Q 004698           73 VVSVCGRARQGKSFILNQLL   92 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~   92 (736)
                      +++++|+.++|||||+|.|.
T Consensus       167 i~~l~G~sG~GKSTLln~l~  186 (302)
T 2yv5_A          167 ICILAGPSGVGKSSILSRLT  186 (302)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            68999999999999999998

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=94.01  E-value=2.3  Score=37.05  Aligned_cols=27  Identities=7%  Similarity=0.156  Sum_probs=11.7

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 004698          560 DDYTSRINNLQGENISLREKSSSLSKT  586 (736)
Q Consensus       560 e~~e~~~~~Le~k~~sl~~r~~~L~~~  586 (736)
                      +.|.-++..|..+.+++.+|...+..+
T Consensus         5 daIKkKm~~lk~e~e~a~drae~~e~~   31 (101)
T 3u1c_A            5 DAIKKKMQMLKLDKENALDRAEQAEAD   31 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444444443

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=94.00  E-value=0.031  Score=59.50  Aligned_cols=54  Identities=20%  Similarity=0.193  Sum_probs=36.3

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      -|.|+|..++|||+|+|+|.+..  |.-.   . .|.|+-....       ++..+.+.|+||+|..
T Consensus       167 kI~ivG~~~vGKSsLl~~l~~~~--~~~~---~-pT~~~~~~~~-------~~~~~~l~i~Dt~G~~  220 (329)
T 3o47_A          167 RILMVGLDAAGKTTILYKLKLGE--IVTT---I-PTIGFNVETV-------EYKNISFTVWDVGGQD  220 (329)
T ss_dssp             EEEEEESTTSSHHHHHHHTCSSC--CEEE---E-EETTEEEEEE-------EETTEEEEEEECC---
T ss_pred             eEEEECCCCccHHHHHHHHhCCC--CCCc---c-cccceEEEEE-------ecCcEEEEEEECCCCH
Confidence            48899999999999999999876  4211   1 2666544322       1234789999999953

>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=93.96  E-value=0.94  Score=41.49  Aligned_cols=66  Identities=17%  Similarity=0.089  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004698          509 IGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENI  574 (736)
Q Consensus       509 i~~e~~~L~~k~es~e~e~~~lk~~Le~~e~~~~e~~k~~e~~In~lkk~~e~~e~~~~~Le~k~~  574 (736)
                      ...++.+++..+.+++.+++.++.+-...+..+.+.+.+|+..+.+.+..+..++.++..+..++.
T Consensus        36 ~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~em~  101 (131)
T 3tnu_A           36 GKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCEME  101 (131)
T ss_dssp             -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356788888888888888888888888878888888888888777665555444444444444333

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=93.91  E-value=0.027  Score=57.12  Aligned_cols=23  Identities=35%  Similarity=0.390  Sum_probs=21.3

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      +++|+||.|+||||||+.|.|-.
T Consensus        33 ~~~iiG~nGsGKSTLl~~l~Gl~   55 (235)
T 3tif_A           33 FVSIMGPSGSGKSTMLNIIGCLD   55 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            69999999999999999999864

>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}

Probab=93.89  E-value=6.7  Score=40.37  Aligned_cols=57  Identities=16%  Similarity=0.183  Sum_probs=35.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHHHhhHHHHHHH
Q 004698          644 QEEVEEWKRKYGVAVREAKAALEKAAIVQE----RTSKEMQQREDVLREEFSSTLAEKEEE  700 (736)
Q Consensus       644 ~~E~~e~~~ky~~~~~e~kalle~~~~~~e----~~~e~~~~~~~~l~~e~~~~~~e~~~~  700 (736)
                      +.-+.+++.+.+..+.+.|.-|+-.++...    ...++++..+..+..+++-..++.-..
T Consensus       164 ~~~a~~L~~~l~~~~eeLr~~L~p~ae~lr~~l~~~~e~l~~~l~~~~~~~~qq~e~f~~~  224 (273)
T 3s84_A          164 KKNAEELKARISASAEELRQRLAPLAEDVRGNLRGNTEGLQKSLAELGGHLDQQVEEFRRR  224 (273)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            445566777777777777777766665543    445566666666666666666555444

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=93.89  E-value=0.027  Score=63.08  Aligned_cols=40  Identities=18%  Similarity=0.152  Sum_probs=30.4

Q ss_pred             ceeeCHHHHHHhhccCCCEEEEEeeCCCCCChhHHHHHHhCC
Q 004698           53 KFRMDPEAVAALQLVKEPIGVVSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        53 ~l~l~~eAl~~L~~i~~~v~vVsv~G~~rtGKS~LlN~l~~~   94 (736)
                      ...++++.+..+.  ..+..-|+|+|....|||+|+|+|++.
T Consensus        27 ~~~~~~~~~~~~~--~k~~~~i~iiG~vd~GKSTLi~~Ll~~   66 (467)
T 1r5b_A           27 QNEVDQELLKDMY--GKEHVNIVFIGHVDAGKSTLGGNILFL   66 (467)
T ss_dssp             TTTCCSTTHHHHS--CCEEEEEEEEECGGGTHHHHHHHHHHH
T ss_pred             ccccCHHHHHhhc--CCCeeEEEEEECCCCCHHHHHHHHHHH
Confidence            3455666666554  356667999999999999999999854

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=93.82  E-value=0.15  Score=59.99  Aligned_cols=71  Identities=13%  Similarity=0.082  Sum_probs=40.7

Q ss_pred             CEEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCC-----------CccceEEeeccccccc----cCCCCceEEEEee
Q 004698           70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHR-----------PCTKGLWLWSAPLKRT----ALDGTEYNLLLLD  134 (736)
Q Consensus        70 ~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~-----------~~T~Giw~w~~p~~~~----~~~g~~~~v~llD  134 (736)
                      .+..|+|+|..++|||+|+++|+.....|.-...+.           ..+.||=+-.......    ..++..+.+.|+|
T Consensus         9 ~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~liD   88 (704)
T 2rdo_7            9 RYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIID   88 (704)
T ss_pred             cccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEEe
Confidence            456799999999999999999985432221110000           0023333322211110    1235558899999


Q ss_pred             cCCCcc
Q 004698          135 SEGIDA  140 (736)
Q Consensus       135 teG~~~  140 (736)
                      |+|..+
T Consensus        89 TPG~~d   94 (704)
T 2rdo_7           89 TPGHVD   94 (704)
T ss_pred             CCCccc
Confidence            999743

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=93.82  E-value=0.073  Score=61.58  Aligned_cols=26  Identities=31%  Similarity=0.344  Sum_probs=22.1

Q ss_pred             CEEEEEeeCCCCCChhHHHHHHhCCC
Q 004698           70 PIGVVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        70 ~v~vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      +..-|+|+|...+|||+|+|+|++..
T Consensus       166 ~~lkV~ivG~~n~GKSTLin~Ll~~~  191 (611)
T 3izq_1          166 PHLSFVVLGHVDAGKSTLMGRLLYDL  191 (611)
T ss_dssp             CCCEEEEECCSSSCHHHHHHHHHSCS
T ss_pred             CceEEEEEECCCCCHHHHHHHHHHhc
Confidence            34457899999999999999999774

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=93.77  E-value=0.024  Score=55.13  Aligned_cols=23  Identities=13%  Similarity=0.263  Sum_probs=21.0

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      +|+|+||.|+|||||++.|.|..
T Consensus         9 ii~l~Gp~GsGKSTl~~~L~~~~   31 (205)
T 3tr0_A            9 LFIISAPSGAGKTSLVRALVKAL   31 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHhhC
Confidence            68999999999999999998753

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=93.66  E-value=0.11  Score=57.59  Aligned_cols=26  Identities=27%  Similarity=0.174  Sum_probs=21.8

Q ss_pred             CEEEEEeeCCCCCChhHHHHHHhCCC
Q 004698           70 PIGVVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        70 ~v~vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      +..-|+|+|...+|||+|+|+|++..
T Consensus        16 ~~~~i~iiG~~d~GKSTL~~~Ll~~~   41 (439)
T 3j2k_7           16 EHVNVVFIGHVDAGKSTIGGQIMYLT   41 (439)
T ss_pred             ceeEEEEEeCCCCCHHHHHHHHHHHc
Confidence            34458899999999999999997653

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=93.65  E-value=0.027  Score=55.57  Aligned_cols=24  Identities=13%  Similarity=0.253  Sum_probs=21.5

Q ss_pred             EEEEeeCCCCCChhHHHHHHhCCC
Q 004698           72 GVVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      .+|+|+||.++|||||++.|++..
T Consensus         9 ~~i~l~GpsGsGKsTl~~~L~~~~   32 (208)
T 3tau_A            9 LLIVLSGPSGVGKGTVREAVFKDP   32 (208)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHST
T ss_pred             cEEEEECcCCCCHHHHHHHHHhhC
Confidence            368899999999999999999764

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=93.64  E-value=0.029  Score=56.32  Aligned_cols=23  Identities=35%  Similarity=0.303  Sum_probs=21.3

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      +++|+|+.|+||||||+.|.|-.
T Consensus        32 ~~~iiG~nGsGKSTLl~~l~Gl~   54 (224)
T 2pcj_A           32 FVSIIGASGSGKSTLLYILGLLD   54 (224)
T ss_dssp             EEEEEECTTSCHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            79999999999999999999864

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=93.63  E-value=0.097  Score=61.45  Aligned_cols=25  Identities=12%  Similarity=0.258  Sum_probs=22.3

Q ss_pred             CCEEEEEeeCCCCCChhHHHHHHhC
Q 004698           69 EPIGVVSVCGRARQGKSFILNQLLG   93 (736)
Q Consensus        69 ~~v~vVsv~G~~rtGKS~LlN~l~~   93 (736)
                      ..+..|+|+|..++|||+|+|+|+.
T Consensus        10 ~~~~~I~IvG~~~aGKTTL~~~Ll~   34 (691)
T 1dar_A           10 KRLRNIGIAAHIDAGKTTTTERILY   34 (691)
T ss_dssp             GGEEEEEEEECTTSCHHHHHHHHHH
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHH
Confidence            3577899999999999999999983

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=93.53  E-value=0.028  Score=55.36  Aligned_cols=23  Identities=35%  Similarity=0.420  Sum_probs=21.1

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      +++|+||.++|||||++.|.|..
T Consensus        22 i~~l~GpnGsGKSTLl~~l~gl~   44 (207)
T 1znw_A           22 VVVLSGPSAVGKSTVVRCLRERI   44 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            68999999999999999998864

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=93.47  E-value=0.033  Score=56.70  Aligned_cols=26  Identities=23%  Similarity=0.295  Sum_probs=23.6

Q ss_pred             CCEEEEEeeCCCCCChhHHHHHHhCCC
Q 004698           69 EPIGVVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        69 ~~v~vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      .+ .+++|+|+.|+||||||+.|.|-.
T Consensus        23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~   48 (240)
T 2onk_A           23 GR-DYCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             CS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence            46 899999999999999999999864

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=93.44  E-value=3  Score=36.34  Aligned_cols=29  Identities=17%  Similarity=0.158  Sum_probs=11.5

Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 004698          615 VCSEIEVLKSRSTAAEARLAAAREQALSA  643 (736)
Q Consensus       615 ~~~~i~~L~~k~~~~E~~~~~~~~q~~~~  643 (736)
                      ...++..|+.|++.+|..+..+..++..+
T Consensus        42 ~E~ei~sL~kKiq~lE~eld~~~e~l~~a   70 (101)
T 3u59_A           42 LEEEQQGLQKKLKGTEDEVEKYSESVKEA   70 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444444444433333333333

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A

Probab=93.42  E-value=5.2  Score=37.59  Aligned_cols=109  Identities=13%  Similarity=0.160  Sum_probs=66.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHH
Q 004698          549 DDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTA  628 (736)
Q Consensus       549 e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~yee~~~~~~~~~~~~~~~i~~L~~k~~~  628 (736)
                      +.-+..+...+..+.+..-.|+..-....+|...+..++..+.....+-..+|+..-..    ...+++.|+.|.+++..
T Consensus        41 E~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERs----v~kLEk~id~lEd~L~~  116 (155)
T 2efr_A           41 EGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERS----VTKLEKSIDDLEDELYA  116 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence            33444444444555555556666666666666666666666666666666666432221    33456666666666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698          629 AEARLAAAREQALSAQEEVEEWKRKYGVAVREA  661 (736)
Q Consensus       629 ~E~~~~~~~~q~~~~~~E~~e~~~ky~~~~~e~  661 (736)
                      ..+......+.++.+-.++..+..++..+.++.
T Consensus       117 ~Kek~~~i~~eLd~tl~el~~~~~~~~~~~~~~  149 (155)
T 2efr_A          117 QKLKYKAISEEMKQLEDKVEELLSKNYHLENEV  149 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccchHHHHHHH
Confidence            666667777777777777766666666666554

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=93.42  E-value=0.036  Score=56.91  Aligned_cols=23  Identities=30%  Similarity=0.413  Sum_probs=21.4

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      +++|+|+.|+||||||+.|.|-.
T Consensus        35 ~~~liG~nGsGKSTLlk~l~Gl~   57 (257)
T 1g6h_A           35 VTLIIGPNGSGKSTLINVITGFL   57 (257)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            79999999999999999999864

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=93.38  E-value=0.058  Score=58.24  Aligned_cols=23  Identities=30%  Similarity=0.319  Sum_probs=21.3

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      +++|+||.|+||||||+.|.|-.
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~   53 (359)
T 2yyz_A           31 FVALLGPSGCGKTTTLLMLAGIY   53 (359)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEEcCCCchHHHHHHHHHCCC
Confidence            68999999999999999999863

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=93.34  E-value=0.039  Score=55.64  Aligned_cols=23  Identities=26%  Similarity=0.537  Sum_probs=21.4

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      +++|+|+.|+||||||+.|+|-.
T Consensus        36 ~~~i~G~nGsGKSTLl~~l~Gl~   58 (229)
T 2pze_A           36 LLAVAGSTGAGKTSLLMMIMGEL   58 (229)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            79999999999999999999864

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=93.31  E-value=0.033  Score=55.65  Aligned_cols=23  Identities=26%  Similarity=0.312  Sum_probs=21.1

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      +++|+|+.|+||||||+.|.|-.
T Consensus        37 ~~~iiG~NGsGKSTLlk~l~Gl~   59 (214)
T 1sgw_A           37 VVNFHGPNGIGKTTLLKTISTYL   59 (214)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            68999999999999999999864

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=93.30  E-value=0.039  Score=55.95  Aligned_cols=23  Identities=39%  Similarity=0.562  Sum_probs=21.4

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      +++|+|+.|+||||||+.|+|-.
T Consensus        33 ~~~i~G~nGsGKSTLl~~l~Gl~   55 (237)
T 2cbz_A           33 LVAVVGQVGCGKSSLLSALLAEM   55 (237)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTCS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            79999999999999999999864

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=93.29  E-value=0.041  Score=52.57  Aligned_cols=22  Identities=23%  Similarity=0.348  Sum_probs=19.6

Q ss_pred             EEEEeeCCCCCChhHHHHHHhC
Q 004698           72 GVVSVCGRARQGKSFILNQLLG   93 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~~   93 (736)
                      .+|+++|+.|+|||||++.+++
T Consensus        10 ei~~l~G~nGsGKSTl~~~~~~   31 (171)
T 4gp7_A           10 SLVVLIGSSGSGKSTFAKKHFK   31 (171)
T ss_dssp             EEEEEECCTTSCHHHHHHHHSC
T ss_pred             EEEEEECCCCCCHHHHHHHHcc
Confidence            4799999999999999999663

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=93.28  E-value=0.028  Score=55.04  Aligned_cols=22  Identities=18%  Similarity=0.225  Sum_probs=20.2

Q ss_pred             EEEeeCCCCCChhHHHHHHhCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~   94 (736)
                      +|+|+|+.++|||||++.|.|.
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g~   24 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASEV   24 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHhh
Confidence            5899999999999999999875

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=93.27  E-value=0.039  Score=57.03  Aligned_cols=23  Identities=35%  Similarity=0.479  Sum_probs=21.4

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      +++|+|+.|+||||||+.|.|-.
T Consensus        39 ~~~liG~nGsGKSTLl~~l~Gl~   61 (266)
T 4g1u_C           39 MVAIIGPNGAGKSTLLRLLTGYL   61 (266)
T ss_dssp             EEEEECCTTSCHHHHHHHHTSSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            79999999999999999999864

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=93.26  E-value=0.03  Score=54.96  Aligned_cols=25  Identities=20%  Similarity=0.278  Sum_probs=22.1

Q ss_pred             CEEEEEeeCCCCCChhHHHHHHhCC
Q 004698           70 PIGVVSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        70 ~v~vVsv~G~~rtGKS~LlN~l~~~   94 (736)
                      +-.+|+|+|+.++|||||++.|.|.
T Consensus         5 ~~~~i~i~G~~GsGKSTl~~~l~~~   29 (211)
T 3asz_A            5 KPFVIGIAGGTASGKTTLAQALART   29 (211)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHH
Confidence            3458999999999999999999875

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=93.26  E-value=0.04  Score=56.77  Aligned_cols=23  Identities=30%  Similarity=0.330  Sum_probs=21.3

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      +++|+|+.|+||||||+.|.|-.
T Consensus        34 ~~~liG~nGsGKSTLlk~l~Gl~   56 (262)
T 1b0u_A           34 VISIIGSSGSGKSTFLRCINFLE   56 (262)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            79999999999999999999864

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=93.25  E-value=0.04  Score=57.27  Aligned_cols=23  Identities=26%  Similarity=0.378  Sum_probs=21.4

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      +++|+||.|+|||||++.|.|-.
T Consensus        36 ~~~iiGpnGsGKSTLl~~l~Gl~   58 (275)
T 3gfo_A           36 VTAILGGNGVGKSTLFQNFNGIL   58 (275)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            79999999999999999999864

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=93.24  E-value=0.16  Score=54.96  Aligned_cols=20  Identities=20%  Similarity=0.388  Sum_probs=19.4

Q ss_pred             EEEeeCCCCCChhHHHHHHh
Q 004698           73 VVSVCGRARQGKSFILNQLL   92 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~   92 (736)
                      .|+++|....|||+|+|+|+
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~   42 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLG   42 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            79999999999999999998

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=93.23  E-value=0.069  Score=57.94  Aligned_cols=23  Identities=22%  Similarity=0.329  Sum_probs=21.3

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      +++|+||.|+||||||+.|.|-.
T Consensus        39 ~~~llGpnGsGKSTLLr~iaGl~   61 (372)
T 1v43_A           39 FLVLLGPSGCGKTTTLRMIAGLE   61 (372)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            78999999999999999999864

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=93.22  E-value=0.13  Score=56.28  Aligned_cols=27  Identities=19%  Similarity=0.270  Sum_probs=23.3

Q ss_pred             CCEEEEEeeCCCCCChhHHHHHHhCCC
Q 004698           69 EPIGVVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        69 ~~v~vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      .+..-|+|+|...+|||+|+|+|.|..
T Consensus         6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~   32 (408)
T 1s0u_A            6 QAEVNIGMVGHVDHGKTSLTKALTGVW   32 (408)
T ss_dssp             CCCEEEEEESCTTSSHHHHHHHHHSCC
T ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCc
Confidence            455678999999999999999999763

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=93.16  E-value=0.042  Score=56.44  Aligned_cols=23  Identities=17%  Similarity=0.219  Sum_probs=21.4

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      +++|+|+.|+||||||+.|.|-.
T Consensus        43 i~~l~G~NGsGKSTLlk~l~Gl~   65 (256)
T 1vpl_A           43 IFGLIGPNGAGKTTTLRIISTLI   65 (256)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            79999999999999999999864

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=93.16  E-value=0.042  Score=55.79  Aligned_cols=23  Identities=26%  Similarity=0.456  Sum_probs=21.4

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      +++|+|+.|+||||||+.|.|-.
T Consensus        34 ~~~l~G~nGsGKSTLl~~l~Gl~   56 (240)
T 1ji0_A           34 IVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            79999999999999999999864

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=93.15  E-value=0.043  Score=55.81  Aligned_cols=24  Identities=25%  Similarity=0.325  Sum_probs=21.7

Q ss_pred             EEEEeeCCCCCChhHHHHHHhCCC
Q 004698           72 GVVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      .+|+|+|+.|+||||||+.|.|-.
T Consensus        29 e~~~i~G~nGsGKSTLl~~l~Gl~   52 (243)
T 1mv5_A           29 SIIAFAGPSGGGKSTIFSLLERFY   52 (243)
T ss_dssp             EEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            379999999999999999999864

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=93.13  E-value=0.068  Score=57.76  Aligned_cols=23  Identities=26%  Similarity=0.410  Sum_probs=21.3

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      +++|+||.|+||||||+.|.|-.
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~   53 (362)
T 2it1_A           31 FMALLGPSGSGKSTLLYTIAGIY   53 (362)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCchHHHHHHHHhcCC
Confidence            68999999999999999999864

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=93.10  E-value=0.034  Score=55.34  Aligned_cols=22  Identities=23%  Similarity=0.255  Sum_probs=20.3

Q ss_pred             EEEeeCCCCCChhHHHHHHhCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~   94 (736)
                      +|+|+|+.++||||||+.|.|.
T Consensus        24 ~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           24 IVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             EEEEECCTTSSTTHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5889999999999999999875

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=93.04  E-value=0.045  Score=55.88  Aligned_cols=23  Identities=26%  Similarity=0.395  Sum_probs=21.4

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      +++|+|+.|+||||||+.|.|-.
T Consensus        37 ~~~i~G~nGsGKSTLl~~l~Gl~   59 (247)
T 2ff7_A           37 VIGIVGRSGSGKSTLTKLIQRFY   59 (247)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            69999999999999999999864

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=92.99  E-value=0.046  Score=56.39  Aligned_cols=23  Identities=39%  Similarity=0.312  Sum_probs=21.3

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      +++|+|+.|+||||||+.|.|-.
T Consensus        52 i~~liG~NGsGKSTLlk~l~Gl~   74 (263)
T 2olj_A           52 VVVVIGPSGSGKSTFLRCLNLLE   74 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Confidence            78999999999999999999864

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=92.98  E-value=0.047  Score=55.87  Aligned_cols=23  Identities=26%  Similarity=0.530  Sum_probs=21.4

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      +++|+|+.|+||||||+.|.|-.
T Consensus        28 ~~~liG~NGsGKSTLlk~l~Gl~   50 (249)
T 2qi9_C           28 ILHLVGPNGAGKSTLLARMAGMT   50 (249)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            69999999999999999999864

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=92.93  E-value=0.047  Score=55.75  Aligned_cols=22  Identities=32%  Similarity=0.362  Sum_probs=20.9

Q ss_pred             EEEeeCCCCCChhHHHHHHhCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~   94 (736)
                      +++|+|+.|+||||||+.|.|-
T Consensus        31 ~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           31 VHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            7999999999999999999985

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=92.89  E-value=0.047  Score=52.48  Aligned_cols=23  Identities=26%  Similarity=0.379  Sum_probs=21.2

Q ss_pred             EEEEeeCCCCCChhHHHHHHhCC
Q 004698           72 GVVSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~~~   94 (736)
                      .+|+|+|+.++|||||++.|.|.
T Consensus        10 ~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A           10 NILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhc
Confidence            36899999999999999999986

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=92.87  E-value=0.033  Score=55.50  Aligned_cols=23  Identities=26%  Similarity=0.577  Sum_probs=20.8

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      +|+|+||.|+|||||++.|+|..
T Consensus        25 ~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           25 PLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            68999999999999999998743

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=92.85  E-value=0.049  Score=55.81  Aligned_cols=23  Identities=39%  Similarity=0.602  Sum_probs=21.4

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      +++|+|+.|+||||||+.|.|-.
T Consensus        33 ~~~l~G~nGsGKSTLl~~l~Gl~   55 (253)
T 2nq2_C           33 ILAVLGQNGCGKSTLLDLLLGIH   55 (253)
T ss_dssp             EEEEECCSSSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999999864

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=92.79  E-value=0.043  Score=53.06  Aligned_cols=23  Identities=17%  Similarity=0.427  Sum_probs=20.8

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      .|+|+|+.|+|||||++.|.|..
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l   24 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERL   24 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            48899999999999999998764

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=92.79  E-value=0.051  Score=56.12  Aligned_cols=22  Identities=36%  Similarity=0.510  Sum_probs=20.9

Q ss_pred             EEEeeCCCCCChhHHHHHHhCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~   94 (736)
                      +++|+|+.|+||||||+.|.|-
T Consensus        48 ~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           48 VHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6999999999999999999986

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=92.77  E-value=0.043  Score=55.02  Aligned_cols=23  Identities=26%  Similarity=0.351  Sum_probs=21.2

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      +|+|+||.|+|||||++.|+|..
T Consensus        18 ii~l~GpsGsGKSTLlk~L~g~~   40 (219)
T 1s96_A           18 LYIVSAPSGAGKSSLIQALLKTQ   40 (219)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhccC
Confidence            78999999999999999999854

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=92.76  E-value=0.051  Score=56.28  Aligned_cols=23  Identities=26%  Similarity=0.283  Sum_probs=21.4

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      +++|+|+.|+||||||+.|.|-.
T Consensus        47 ~~~i~G~nGsGKSTLlk~l~Gl~   69 (271)
T 2ixe_A           47 VTALVGPNGSGKSTVAALLQNLY   69 (271)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            79999999999999999999864

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=92.75  E-value=0.18  Score=60.62  Aligned_cols=27  Identities=26%  Similarity=0.354  Sum_probs=23.4

Q ss_pred             CCCEEEEEeeCCCCCChhHHHHHHhCC
Q 004698           68 KEPIGVVSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        68 ~~~v~vVsv~G~~rtGKS~LlN~l~~~   94 (736)
                      ...+.-|+|+|..++|||+|+|+|++.
T Consensus        16 ~~~~rnI~IiG~~~~GKTTL~~~Ll~~   42 (842)
T 1n0u_A           16 VTNVRNMSVIAHVDHGKSTLTDSLVQR   42 (842)
T ss_dssp             GGGEEEEEEECCGGGTHHHHHHHHHHH
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHHh
Confidence            346777999999999999999999864

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=92.70  E-value=0.053  Score=55.97  Aligned_cols=23  Identities=30%  Similarity=0.420  Sum_probs=21.3

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      +++|+|+.|+||||||+.|.|-.
T Consensus        35 ~~~liG~nGsGKSTLl~~i~Gl~   57 (266)
T 2yz2_A           35 CLLVAGNTGSGKSTLLQIVAGLI   57 (266)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            69999999999999999999864

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=92.70  E-value=0.042  Score=51.51  Aligned_cols=37  Identities=24%  Similarity=0.332  Sum_probs=30.2

Q ss_pred             eCHHHHHHhhccCCCEEEEEeeCCCCCChhHHHHHHhCC
Q 004698           56 MDPEAVAALQLVKEPIGVVSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        56 l~~eAl~~L~~i~~~v~vVsv~G~~rtGKS~LlN~l~~~   94 (736)
                      .|.+++..|..+.+  .++.++|+.++|||+|++.+.+.
T Consensus        23 ~n~~~~~~l~~~~g--~~~~l~G~~G~GKTtL~~~i~~~   59 (149)
T 2kjq_A           23 ENAELVYVLRHKHG--QFIYVWGEEGAGKSHLLQAWVAQ   59 (149)
T ss_dssp             CTHHHHHHCCCCCC--SEEEEESSSTTTTCHHHHHHHHH
T ss_pred             ccHHHHHHHHhcCC--CEEEEECCCCCCHHHHHHHHHHH
Confidence            56788888877733  36788999999999999999874

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=92.67  E-value=0.054  Score=55.73  Aligned_cols=23  Identities=26%  Similarity=0.286  Sum_probs=21.3

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      +|+|+|+.|+||||||+.|.|-.
T Consensus        48 ~~~i~G~nGsGKSTLl~~l~Gl~   70 (260)
T 2ghi_A           48 TCALVGHTGSGKSTIAKLLYRFY   70 (260)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhccC
Confidence            79999999999999999999863

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=92.65  E-value=0.055  Score=56.34  Aligned_cols=23  Identities=26%  Similarity=0.231  Sum_probs=21.3

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      +++|+|+.|+||||||+.|.|-.
T Consensus        49 ~~~liG~NGsGKSTLlk~l~Gl~   71 (279)
T 2ihy_A           49 KWILYGLNGAGKTTLLNILNAYE   71 (279)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            68999999999999999999864

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=92.61  E-value=0.045  Score=63.14  Aligned_cols=26  Identities=27%  Similarity=0.456  Sum_probs=23.0

Q ss_pred             CCCEEEEEeeCCCCCChhHHHHHHhC
Q 004698           68 KEPIGVVSVCGRARQGKSFILNQLLG   93 (736)
Q Consensus        68 ~~~v~vVsv~G~~rtGKS~LlN~l~~   93 (736)
                      ..++.-|+|+|...+|||+|+|+|++
T Consensus       174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~  199 (592)
T 3mca_A          174 PKPVVHLVVTGHVDSGKSTMLGRIMF  199 (592)
T ss_dssp             CCCEEEEEEECCSSSTHHHHHHHHHH
T ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHH
Confidence            45677899999999999999999975

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=92.54  E-value=0.087  Score=60.70  Aligned_cols=101  Identities=18%  Similarity=0.255  Sum_probs=52.1

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCCCccccc-CCCCCccceEEeeccc--------cccc-cCCCCceEEEEeecCCCcccC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRSSGFQVA-STHRPCTKGLWLWSAP--------LKRT-ALDGTEYNLLLLDSEGIDAYD  142 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~-~~~~~~T~Giw~w~~p--------~~~~-~~~g~~~~v~llDteG~~~~~  142 (736)
                      +|+|+|...+|||+|+|+|++..  |.-. ++.-..|-|......+        .... ..+.....+.|+||+|..++.
T Consensus         7 ~V~IvGh~d~GKTTLl~~L~~~~--v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F~   84 (594)
T 1g7s_A            7 IVSVLGHVDHGKTTLLDHIRGSA--VASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFT   84 (594)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH--HSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCT
T ss_pred             EEEEECCCCCcHHHHHHHHhccc--CccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHHH
Confidence            68999999999999999999753  2110 0000123343322110        0000 000111258899999976543


Q ss_pred             CCCccchHHHHHhhhccceEEEccCCCCchHHhhhhHH
Q 004698          143 QTGTYSTQIFSLAVLLSSMFIYNQMGGIDESAIDRLSL  180 (736)
Q Consensus       143 ~~~~~d~~IFaLa~LLSS~~IyN~~g~i~e~~l~~L~~  180 (736)
                      .....     ++...=.-++||.....+..+.++.+.+
T Consensus        85 ~~~~r-----~~~~aD~aILVvDa~~Gv~~qT~e~l~~  117 (594)
T 1g7s_A           85 TLRKR-----GGALADLAILIVDINEGFKPQTQEALNI  117 (594)
T ss_dssp             TSBCS-----SSBSCSEEEEEEETTTCCCHHHHHHHHH
T ss_pred             HHHHH-----HHhhCCEEEEEEECCCCccHhHHHHHHH
Confidence            32111     1111112356777776666766665543

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=92.42  E-value=0.049  Score=57.67  Aligned_cols=26  Identities=23%  Similarity=0.160  Sum_probs=22.8

Q ss_pred             CCEEEEEeeCCCCCChhHHHHHHhCC
Q 004698           69 EPIGVVSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        69 ~~v~vVsv~G~~rtGKS~LlN~l~~~   94 (736)
                      .+-.||+|+|+.++|||||++.|.|.
T Consensus        88 ~~g~ivgI~G~sGsGKSTL~~~L~gl  113 (312)
T 3aez_A           88 PVPFIIGVAGSVAVGKSTTARVLQAL  113 (312)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCchHHHHHHHHHhh
Confidence            34568999999999999999999875

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=92.29  E-value=0.052  Score=54.91  Aligned_cols=24  Identities=21%  Similarity=0.324  Sum_probs=21.5

Q ss_pred             EEEEEeeCCCCCChhHHHHHHhCC
Q 004698           71 IGVVSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        71 v~vVsv~G~~rtGKS~LlN~l~~~   94 (736)
                      -.+|+|+|+.++|||||++.|.|.
T Consensus        25 g~iigI~G~~GsGKSTl~k~L~~~   48 (245)
T 2jeo_A           25 PFLIGVSGGTASGKSTVCEKIMEL   48 (245)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHH
Confidence            357999999999999999999874

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=92.22  E-value=0.057  Score=55.59  Aligned_cols=33  Identities=24%  Similarity=0.378  Sum_probs=25.9

Q ss_pred             HHHHhhccCCCEEEEEeeCCCCCChhHHHHHHhCC
Q 004698           60 AVAALQLVKEPIGVVSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        60 Al~~L~~i~~~v~vVsv~G~~rtGKS~LlN~l~~~   94 (736)
                      +++-+. + .|=.+|+|+||.|+||||||+.|+|.
T Consensus        16 vl~~i~-i-~~g~~v~i~Gp~GsGKSTll~~l~g~   48 (261)
T 2eyu_A           16 KVLELC-H-RKMGLILVTGPTGSGKSTTIASMIDY   48 (261)
T ss_dssp             HHHHGG-G-CSSEEEEEECSTTCSHHHHHHHHHHH
T ss_pred             HHHHHh-h-CCCCEEEEECCCCccHHHHHHHHHHh
Confidence            444454 3 34458999999999999999999874

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=92.18  E-value=0.033  Score=62.78  Aligned_cols=22  Identities=27%  Similarity=0.516  Sum_probs=20.2

Q ss_pred             EEEeeCCCCCChhHHHHHHhCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~   94 (736)
                      +|+|+|...+|||+|+|+|.+.
T Consensus         6 ~V~IvGhvd~GKTTLl~~L~~~   27 (501)
T 1zo1_I            6 VVTIMGHVDHGKTSLLEYIRST   27 (501)
T ss_dssp             CEEEEESTTSSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999999864

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=92.10  E-value=0.098  Score=53.27  Aligned_cols=21  Identities=33%  Similarity=0.493  Sum_probs=18.7

Q ss_pred             EEeeCCC---------CCChhHHHHHHhCC
Q 004698           74 VSVCGRA---------RQGKSFILNQLLGR   94 (736)
Q Consensus        74 Vsv~G~~---------rtGKS~LlN~l~~~   94 (736)
                      |+|+|..         ++|||+|+|+|.+.
T Consensus        22 i~lvG~~~~~~~~~~~~vGKSsLi~~l~~~   51 (255)
T 3c5h_A           22 ISVVGLSGTEKEKGQCGIGKSCLCNRFVRP   51 (255)
T ss_dssp             EEEEESCCCTTTTTTCCCSHHHHHHHHHCC
T ss_pred             EEEECCCccccccCCCCcCHHHHHHHHHhc
Confidence            6778888         99999999999984

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=92.09  E-value=0.064  Score=59.35  Aligned_cols=30  Identities=27%  Similarity=0.301  Sum_probs=24.0

Q ss_pred             CCEEEEEeeCCCCCChhHHHHHHhCCCCcc
Q 004698           69 EPIGVVSVCGRARQGKSFILNQLLGRSSGF   98 (736)
Q Consensus        69 ~~v~vVsv~G~~rtGKS~LlN~l~~~~~gF   98 (736)
                      .+..-|+|+|..++|||+|+|+|++...+|
T Consensus         4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i   33 (435)
T 1jny_A            4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFI   33 (435)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHHBCC
T ss_pred             CCEEEEEEEeCCCCCHHHHHHHHHHHcCCc
Confidence            355568999999999999999998653334

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=92.05  E-value=0.071  Score=56.41  Aligned_cols=28  Identities=32%  Similarity=0.564  Sum_probs=24.6

Q ss_pred             CEEEEEeeCCCCCChhHHHHHHhCCCCc
Q 004698           70 PIGVVSVCGRARQGKSFILNQLLGRSSG   97 (736)
Q Consensus        70 ~v~vVsv~G~~rtGKS~LlN~l~~~~~g   97 (736)
                      ++-|+.|+|+.|+|||||||.|+|...|
T Consensus         3 ~i~v~~i~G~~GaGKTTll~~l~~~~~~   30 (318)
T 1nij_A            3 PIAVTLLTGFLGAGKTTLLRHILNEQHG   30 (318)
T ss_dssp             CEEEEEEEESSSSSCHHHHHHHHHSCCC
T ss_pred             cccEEEEEecCCCCHHHHHHHHHhhcCC
Confidence            6789999999999999999999976533

>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}

Probab=92.02  E-value=4.3  Score=35.96  Aligned_cols=70  Identities=13%  Similarity=0.235  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 004698          510 GSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREK  579 (736)
Q Consensus       510 ~~e~~~L~~k~es~e~e~~~lk~~Le~~e~~~~e~~k~~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r  579 (736)
                      ++-...|+.++..+.-+.+.++..++............++.+|..++..-+.+...+..||.+.+.++..
T Consensus         2 Ek~~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~   71 (111)
T 2v66_B            2 EQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERA   71 (111)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHH
Confidence            3446678888888888888888887776555444444555555555444444444444444444444433

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=91.96  E-value=0.18  Score=55.00  Aligned_cols=24  Identities=17%  Similarity=0.159  Sum_probs=21.1

Q ss_pred             EEEEEeeCCCCCChhHHHHHHhCC
Q 004698           71 IGVVSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        71 v~vVsv~G~~rtGKS~LlN~l~~~   94 (736)
                      -.-|+|+|...+|||+|+|+|++.
T Consensus         3 ~~~I~iiG~~~~GKSTLi~~L~~~   26 (397)
T 1d2e_A            3 HVNVGTIGHVDHGKTTLTAAITKI   26 (397)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHH
T ss_pred             eEEEEEEeCCCCCHHHHHHHHhCh
Confidence            345899999999999999999874

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=91.91  E-value=0.063  Score=52.13  Aligned_cols=23  Identities=13%  Similarity=0.369  Sum_probs=21.1

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      +|+|+|+.|+|||||++.|.+..
T Consensus         8 ~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            8 LIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHCT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhh
Confidence            79999999999999999998764

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=91.88  E-value=0.19  Score=55.71  Aligned_cols=23  Identities=17%  Similarity=0.257  Sum_probs=20.9

Q ss_pred             CEEEEEeeCCCCCChhHHHHHHh
Q 004698           70 PIGVVSVCGRARQGKSFILNQLL   92 (736)
Q Consensus        70 ~v~vVsv~G~~rtGKS~LlN~l~   92 (736)
                      +-.||.++|++++||||+++.|.
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA  121 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLA  121 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHH
Confidence            35789999999999999999987

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=91.88  E-value=0.066  Score=50.82  Aligned_cols=27  Identities=22%  Similarity=0.219  Sum_probs=22.8

Q ss_pred             CCEEEEEeeCCCCCChhHHHHHHhCCC
Q 004698           69 EPIGVVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        69 ~~v~vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      .+=.||+++|+.++|||||++.|.|..
T Consensus        31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           31 EKAIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence            344579999999999999999998753

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=91.87  E-value=0.059  Score=51.85  Aligned_cols=22  Identities=27%  Similarity=0.333  Sum_probs=20.2

Q ss_pred             EEEeeCCCCCChhHHHHHHhCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~   94 (736)
                      +|+|+|+.++|||||++.|.+.
T Consensus         4 ii~l~G~~GaGKSTl~~~L~~~   25 (189)
T 2bdt_A            4 LYIITGPAGVGKSTTCKRLAAQ   25 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhcc
Confidence            7899999999999999999863

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=91.83  E-value=0.077  Score=57.21  Aligned_cols=23  Identities=39%  Similarity=0.577  Sum_probs=21.2

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      +++|+|+.++|||||+|.|+|..
T Consensus       217 ~~~lvG~sG~GKSTLln~L~g~~  239 (358)
T 2rcn_A          217 ISIFAGQSGVGKSSLLNALLGLQ  239 (358)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCCS
T ss_pred             EEEEECCCCccHHHHHHHHhccc
Confidence            68999999999999999999864

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=91.81  E-value=0.08  Score=54.59  Aligned_cols=22  Identities=27%  Similarity=0.413  Sum_probs=20.8

Q ss_pred             EEEeeCCCCCChhHHHHHHhCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~   94 (736)
                      +++|+|+.++||||||+.|.|-
T Consensus        32 ~~~i~G~NGsGKSTLlk~l~Gl   53 (263)
T 2pjz_A           32 KVIILGPNGSGKTTLLRAISGL   53 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            7999999999999999999875

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=91.72  E-value=0.06  Score=52.65  Aligned_cols=33  Identities=36%  Similarity=0.637  Sum_probs=24.8

Q ss_pred             EEeeCCCCCChhHHHHHHhCCC-C--cccccCCCCC
Q 004698           74 VSVCGRARQGKSFILNQLLGRS-S--GFQVASTHRP  106 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~-~--gF~~~~~~~~  106 (736)
                      |.|+||.|+||++|++.|+... .  +|.+++|+++
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~   39 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRT   39 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSC
T ss_pred             EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccC
Confidence            5589999999999999998653 2  3566666544

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=91.67  E-value=0.059  Score=56.87  Aligned_cols=23  Identities=30%  Similarity=0.388  Sum_probs=21.2

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      +|+|+|+.|+|||||++.|+|-.
T Consensus        82 ~vaivG~sGsGKSTLl~ll~gl~  104 (306)
T 3nh6_A           82 TLALVGPSGAGKSTILRLLFRFY  104 (306)
T ss_dssp             EEEEESSSCHHHHHHHHHHTTSS
T ss_pred             EEEEECCCCchHHHHHHHHHcCC
Confidence            79999999999999999999864

>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A

Probab=91.67  E-value=3.1  Score=35.73  Aligned_cols=41  Identities=17%  Similarity=0.293  Sum_probs=31.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 004698          546 KRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKT  586 (736)
Q Consensus       546 k~~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~  586 (736)
                      .-|+..|.++++.++.+..+.+.++.+++++......++.+
T Consensus        52 ~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~K   92 (93)
T 3s4r_A           52 DLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREK   92 (93)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            45888888888888888888888888888876666655543

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=91.66  E-value=0.061  Score=53.73  Aligned_cols=23  Identities=22%  Similarity=0.404  Sum_probs=15.4

Q ss_pred             EEEeeCCCCCChhHHHHHHh-CCC
Q 004698           73 VVSVCGRARQGKSFILNQLL-GRS   95 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~-~~~   95 (736)
                      +|+|+||.++|||||++.|. |..
T Consensus        29 ii~l~Gp~GsGKSTl~~~L~~~~~   52 (231)
T 3lnc_A           29 ILVLSSPSGCGKTTVANKLLEKQK   52 (231)
T ss_dssp             EEEEECSCC----CHHHHHHC---
T ss_pred             EEEEECCCCCCHHHHHHHHHhcCC
Confidence            79999999999999999999 764

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=91.66  E-value=0.27  Score=57.41  Aligned_cols=26  Identities=31%  Similarity=0.433  Sum_probs=22.9

Q ss_pred             CCEEEEEeeCCCCCChhHHHHHHhCC
Q 004698           69 EPIGVVSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        69 ~~v~vVsv~G~~rtGKS~LlN~l~~~   94 (736)
                      .+...|+|+|..++|||+|+|.|++.
T Consensus         7 ~~~~~i~IiG~~gaGKTTLl~~L~~~   32 (665)
T 2dy1_A            7 AMIRTVALVGHAGSGKTTLTEALLYK   32 (665)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCChHHHHHHHHHHh
Confidence            45678999999999999999999953

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=91.65  E-value=0.13  Score=57.29  Aligned_cols=29  Identities=28%  Similarity=0.306  Sum_probs=23.3

Q ss_pred             CEEEEEeeCCCCCChhHHHHHHhCCCCcc
Q 004698           70 PIGVVSVCGRARQGKSFILNQLLGRSSGF   98 (736)
Q Consensus        70 ~v~vVsv~G~~rtGKS~LlN~l~~~~~gF   98 (736)
                      +..-|+|+|....|||+|+|+|++...+|
T Consensus         6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~   34 (458)
T 1f60_A            6 SHINVVVIGHVDSGKSTTTGHLIYKCGGI   34 (458)
T ss_dssp             EEEEEEEEECTTSCHHHHHHHHHHHHSCS
T ss_pred             ceeEEEEEcCCCCCHHHHHHHHHHHcCCc
Confidence            44568899999999999999998753333

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=91.63  E-value=0.067  Score=56.46  Aligned_cols=24  Identities=25%  Similarity=0.385  Sum_probs=21.2

Q ss_pred             EEEEeeCCCCCChhHHHHHHhCCC
Q 004698           72 GVVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      .+|+|+||.++|||||++.|+|-.
T Consensus       127 e~vaIvGpsGsGKSTLl~lL~gl~  150 (305)
T 2v9p_A          127 NCLAFIGPPNTGKSMLCNSLIHFL  150 (305)
T ss_dssp             SEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCcHHHHHHHHhhhc
Confidence            368999999999999999998753

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=91.49  E-value=0.081  Score=55.37  Aligned_cols=23  Identities=26%  Similarity=0.537  Sum_probs=21.3

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      +++|+|+.|+||||||+.|.|-.
T Consensus        66 ~~~i~G~NGsGKSTLlk~l~Gl~   88 (290)
T 2bbs_A           66 LLAVAGSTGAGKTSLLMMIMGEL   88 (290)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            79999999999999999999864

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=91.45  E-value=0.045  Score=53.64  Aligned_cols=23  Identities=26%  Similarity=0.550  Sum_probs=20.4

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      +|.|+|+.++|||||++.|....
T Consensus        14 ~i~l~G~sGsGKsTl~~~L~~~~   36 (204)
T 2qor_A           14 PLVVCGPSGVGKGTLIKKVLSEF   36 (204)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHhC
Confidence            68889999999999999998654

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=91.43  E-value=0.15  Score=55.37  Aligned_cols=23  Identities=30%  Similarity=0.408  Sum_probs=21.4

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      +++|+||.|+||||||+.|.|-.
T Consensus        31 ~~~llGpsGsGKSTLLr~iaGl~   53 (381)
T 3rlf_A           31 FVVFVGPSGCGKSTLLRMIAGLE   53 (381)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEcCCCchHHHHHHHHHcCC
Confidence            79999999999999999999864

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=91.37  E-value=0.13  Score=56.78  Aligned_cols=24  Identities=21%  Similarity=0.246  Sum_probs=21.2

Q ss_pred             CEEEEEeeCCCCCChhHHHHHHhC
Q 004698           70 PIGVVSVCGRARQGKSFILNQLLG   93 (736)
Q Consensus        70 ~v~vVsv~G~~rtGKS~LlN~l~~   93 (736)
                      +..+|+|+|++++||||+++.|.+
T Consensus        98 ~~~vI~ivG~~GvGKTTla~~La~  121 (432)
T 2v3c_C           98 KQNVILLVGIQGSGKTTTAAKLAR  121 (432)
T ss_dssp             SCCCEEEECCSSSSTTHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            345899999999999999999985

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=91.34  E-value=0.099  Score=54.86  Aligned_cols=23  Identities=22%  Similarity=0.172  Sum_probs=20.3

Q ss_pred             EEEEEeeCCCCCChhHHHHHHhC
Q 004698           71 IGVVSVCGRARQGKSFILNQLLG   93 (736)
Q Consensus        71 v~vVsv~G~~rtGKS~LlN~l~~   93 (736)
                      -.||+++|+.++||||+++.|.+
T Consensus        98 ~~vi~i~G~~G~GKTT~~~~la~  120 (297)
T 1j8m_F           98 PYVIMLVGVQGTGKTTTAGKLAY  120 (297)
T ss_dssp             SEEEEEECSSCSSTTHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45888999999999999999874

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=91.19  E-value=0.096  Score=55.79  Aligned_cols=23  Identities=26%  Similarity=0.460  Sum_probs=20.9

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      +|+|+|+.++|||||||.|+|.-
T Consensus       173 ~v~i~G~~GsGKTTll~~l~g~~  195 (330)
T 2pt7_A          173 NVIVCGGTGSGKTTYIKSIMEFI  195 (330)
T ss_dssp             CEEEEESTTSCHHHHHHHGGGGS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58899999999999999999763

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=91.18  E-value=0.072  Score=50.26  Aligned_cols=23  Identities=30%  Similarity=0.252  Sum_probs=20.7

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      +|+|+|+.++|||||++.|.+..
T Consensus         6 ~i~l~G~~GsGKSTl~~~La~~l   28 (173)
T 1kag_A            6 NIFLVGPMGAGKSTIGRQLAQQL   28 (173)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            58999999999999999998753

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=91.18  E-value=0.12  Score=50.48  Aligned_cols=26  Identities=15%  Similarity=0.272  Sum_probs=23.1

Q ss_pred             CEEEEEeeCCCCCChhHHHHHHhCCC
Q 004698           70 PIGVVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        70 ~v~vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      +..+|+|+|+.++|||||++.|.+..
T Consensus        20 ~~~~i~i~G~~GsGKSTl~~~L~~~~   45 (207)
T 2qt1_A           20 KTFIIGISGVTNSGKTTLAKNLQKHL   45 (207)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence            44689999999999999999999864

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=91.10  E-value=0.12  Score=56.91  Aligned_cols=41  Identities=27%  Similarity=0.377  Sum_probs=30.7

Q ss_pred             eeeCHHHHHHhhc-cCCCEEEEEeeCCCCCChhHHHHHHhCC
Q 004698           54 FRMDPEAVAALQL-VKEPIGVVSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        54 l~l~~eAl~~L~~-i~~~v~vVsv~G~~rtGKS~LlN~l~~~   94 (736)
                      +.+.++...+|.. +..+=.+|+|+||.++||||||+.|+|.
T Consensus       149 Lg~~~~~~~~L~~l~~~~ggii~I~GpnGSGKTTlL~allg~  190 (418)
T 1p9r_A          149 LGMTAHNHDNFRRLIKRPHGIILVTGPTGSGKSTTLYAGLQE  190 (418)
T ss_dssp             SCCCHHHHHHHHHHHTSSSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHhh
Confidence            4455655555543 2456678999999999999999999874

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=91.08  E-value=0.08  Score=59.92  Aligned_cols=39  Identities=23%  Similarity=0.293  Sum_probs=29.8

Q ss_pred             eCHHHHHHhhc-cCCCEEEEEeeCCCCCChhHHHHHHhCCC
Q 004698           56 MDPEAVAALQL-VKEPIGVVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        56 l~~eAl~~L~~-i~~~v~vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      +.+++++.|.. +...- +|+|+|+.|||||||||.|+|.-
T Consensus       245 ~~~~~l~~l~~~v~~g~-~i~I~GptGSGKTTlL~aL~~~i  284 (511)
T 2oap_1          245 VPSGVLAYLWLAIEHKF-SAIVVGETASGKTTTLNAIMMFI  284 (511)
T ss_dssp             SCHHHHHHHHHHHHTTC-CEEEEESTTSSHHHHHHHHGGGS
T ss_pred             CCHHHHHHHHHHHhCCC-EEEEECCCCCCHHHHHHHHHhhC
Confidence            45788888754 33332 38999999999999999998753

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=91.04  E-value=0.11  Score=52.43  Aligned_cols=22  Identities=14%  Similarity=0.240  Sum_probs=20.4

Q ss_pred             EEEEEeeCCCCCChhHHHHHHh
Q 004698           71 IGVVSVCGRARQGKSFILNQLL   92 (736)
Q Consensus        71 v~vVsv~G~~rtGKS~LlN~l~   92 (736)
                      -.+|+|+|+.|+|||||++.|.
T Consensus        27 ~~~i~l~G~~GsGKSTl~k~La   48 (246)
T 2bbw_A           27 LLRAVILGPPGSGKGTVCQRIA   48 (246)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            3579999999999999999998

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=90.99  E-value=0.081  Score=52.14  Aligned_cols=22  Identities=23%  Similarity=0.324  Sum_probs=20.7

Q ss_pred             EEEEeeCCCCCChhHHHHHHhC
Q 004698           72 GVVSVCGRARQGKSFILNQLLG   93 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~~   93 (736)
                      .+++|+|+.++|||+|++.|+|
T Consensus        26 ~~~~l~G~nGsGKSTll~~l~g   47 (231)
T 4a74_A           26 AITEVFGEFGSGKTQLAHTLAV   47 (231)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4899999999999999999987

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=90.98  E-value=9  Score=42.40  Aligned_cols=12  Identities=0%  Similarity=-0.238  Sum_probs=4.3

Q ss_pred             chhHHHHHHHHH
Q 004698          458 SIDNVVKVLDGL  469 (736)
Q Consensus       458 ~~~~~~~~~~~l  469 (736)
                      +...|...++.+
T Consensus       322 g~~eF~~Eve~L  333 (487)
T 3oja_A          322 GSETERLECERE  333 (487)
T ss_dssp             ---CHHHHHHHH
T ss_pred             cHHHHHHHHHHH
Confidence            344555544433

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=90.97  E-value=0.091  Score=51.24  Aligned_cols=23  Identities=26%  Similarity=0.291  Sum_probs=20.7

Q ss_pred             EEEEeeCCCCCChhHHHHHHhCC
Q 004698           72 GVVSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~~~   94 (736)
                      .+|+|+|+.|+|||||++.|.+.
T Consensus        30 ~~i~l~G~~GsGKSTl~~~L~~~   52 (200)
T 4eun_A           30 RHVVVMGVSGSGKTTIAHGVADE   52 (200)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHh
Confidence            47899999999999999999865

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=90.97  E-value=0.083  Score=49.29  Aligned_cols=25  Identities=28%  Similarity=0.414  Sum_probs=20.8

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCCCccc
Q 004698           73 VVSVCGRARQGKSFILNQLLGRSSGFQ   99 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~~gF~   99 (736)
                      +|.|+|+.+|||||+.+.|  ..-||.
T Consensus         3 ~I~l~G~~GsGKsT~a~~L--~~~g~~   27 (179)
T 3lw7_A            3 VILITGMPGSGKSEFAKLL--KERGAK   27 (179)
T ss_dssp             EEEEECCTTSCHHHHHHHH--HHTTCE
T ss_pred             EEEEECCCCCCHHHHHHHH--HHCCCc
Confidence            6899999999999999999  433443

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=90.93  E-value=0.11  Score=56.23  Aligned_cols=23  Identities=22%  Similarity=0.238  Sum_probs=21.3

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      +++|+|+.|+||||||+.|.|-.
T Consensus        56 i~~IiGpnGaGKSTLlr~i~GL~   78 (366)
T 3tui_C           56 IYGVIGASGAGKSTLIRCVNLLE   78 (366)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEcCCCchHHHHHHHHhcCC
Confidence            69999999999999999999864

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=90.93  E-value=0.15  Score=56.54  Aligned_cols=24  Identities=29%  Similarity=0.385  Sum_probs=21.2

Q ss_pred             CCEEEEEeeCCCCCChhHHHHHHh
Q 004698           69 EPIGVVSVCGRARQGKSFILNQLL   92 (736)
Q Consensus        69 ~~v~vVsv~G~~rtGKS~LlN~l~   92 (736)
                      .+..||.|+|+.|+||||+...|+
T Consensus        98 ~~~~vI~ivG~~GvGKTT~a~~LA  121 (433)
T 2xxa_A           98 QPPAVVLMAGLQGAGKTTSVGKLG  121 (433)
T ss_dssp             SSSEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHH
Confidence            456789999999999999999987

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=90.88  E-value=0.12  Score=55.60  Aligned_cols=23  Identities=26%  Similarity=0.521  Sum_probs=20.9

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      +|+|+|+.|+|||||+|.|+|..
T Consensus       177 ~i~ivG~sGsGKSTll~~l~~~~  199 (361)
T 2gza_A          177 VIVVAGETGSGKTTLMKALMQEI  199 (361)
T ss_dssp             CEEEEESSSSCHHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHHhcC
Confidence            58899999999999999999864

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=90.87  E-value=0.083  Score=55.58  Aligned_cols=26  Identities=23%  Similarity=0.195  Sum_probs=22.7

Q ss_pred             CCEEEEEeeCCCCCChhHHHHHHhCC
Q 004698           69 EPIGVVSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        69 ~~v~vVsv~G~~rtGKS~LlN~l~~~   94 (736)
                      .+-.+|+|+|+.++|||||++.|.|.
T Consensus        78 ~~g~iigI~G~~GsGKSTl~~~L~~~  103 (308)
T 1sq5_A           78 RIPYIISIAGSVAVGKSTTARVLQAL  103 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            34468999999999999999999874

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=90.86  E-value=0.094  Score=56.53  Aligned_cols=25  Identities=40%  Similarity=0.549  Sum_probs=22.1

Q ss_pred             CEEEEEeeCCCCCChhHHHHHHhCC
Q 004698           70 PIGVVSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        70 ~v~vVsv~G~~rtGKS~LlN~l~~~   94 (736)
                      |=.+|+|+||.|+||||||+.|+|.
T Consensus       122 ~~g~i~I~GptGSGKTTlL~~l~g~  146 (356)
T 3jvv_A          122 PRGLVLVTGPTGSGKSTTLAAMLDY  146 (356)
T ss_dssp             SSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhc
Confidence            4458999999999999999999874

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=90.84  E-value=0.2  Score=55.42  Aligned_cols=23  Identities=17%  Similarity=0.177  Sum_probs=20.8

Q ss_pred             CEEEEEeeCCCCCChhHHHHHHh
Q 004698           70 PIGVVSVCGRARQGKSFILNQLL   92 (736)
Q Consensus        70 ~v~vVsv~G~~rtGKS~LlN~l~   92 (736)
                      +-.||.++|++++||||+++.|.
T Consensus        96 ~~~vI~lvG~~GsGKTTt~~kLA  118 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTAGKLA  118 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHH
Confidence            35789999999999999999987

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=90.80  E-value=0.11  Score=55.94  Aligned_cols=23  Identities=30%  Similarity=0.489  Sum_probs=21.4

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      +++|+||.++||||||+.|.|-.
T Consensus        43 ~~~llGpnGsGKSTLLr~iaGl~   65 (355)
T 1z47_A           43 MVGLLGPSGSGKTTILRLIAGLE   65 (355)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            79999999999999999999864

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=90.69  E-value=0.14  Score=49.94  Aligned_cols=22  Identities=27%  Similarity=0.351  Sum_probs=20.5

Q ss_pred             EEEEeeCCCCCChhHHHHHHhC
Q 004698           72 GVVSVCGRARQGKSFILNQLLG   93 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~~   93 (736)
                      .+|+|+|+.+|||||+.+.|.+
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999999987

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=90.61  E-value=0.12  Score=52.48  Aligned_cols=23  Identities=26%  Similarity=0.313  Sum_probs=20.6

Q ss_pred             CEEEEEeeCCCCCChhHHHHHHh
Q 004698           70 PIGVVSVCGRARQGKSFILNQLL   92 (736)
Q Consensus        70 ~v~vVsv~G~~rtGKS~LlN~l~   92 (736)
                      +-.+|+|+|+.|+|||||++.|.
T Consensus        26 ~g~~I~I~G~~GsGKSTl~k~La   48 (252)
T 4e22_A           26 IAPVITVDGPSGAGKGTLCKALA   48 (252)
T ss_dssp             TSCEEEEECCTTSSHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHH
Confidence            33479999999999999999998

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=90.60  E-value=0.11  Score=56.06  Aligned_cols=23  Identities=26%  Similarity=0.407  Sum_probs=21.4

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      +++|+||.|+||||||+.|.|-.
T Consensus        32 ~~~llGpsGsGKSTLLr~iaGl~   54 (359)
T 3fvq_A           32 ILFIIGASGCGKTTLLRCLAGFE   54 (359)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCchHHHHHHHHhcCC
Confidence            79999999999999999999864

>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=90.55  E-value=6.4  Score=33.91  Aligned_cols=90  Identities=18%  Similarity=0.248  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698          583 LSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAK  662 (736)
Q Consensus       583 L~~~le~lk~e~~e~~~~yee~~~~~~~~~~~~~~~i~~L~~k~~~~E~~~~~~~~q~~~~~~E~~e~~~ky~~~~~e~k  662 (736)
                      |.+.++.++.++..+......           +..++..|+..+..-..+...++.....+.+|++|+          .-
T Consensus         3 ~~~~~e~lre~l~~le~~~~~-----------~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeL----------Ta   61 (97)
T 2eqb_B            3 LGSNYNQLKEDYNTLKRELSD-----------RDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDL----------TA   61 (97)
T ss_dssp             --CCHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HH
T ss_pred             HhHHHHHHHHHHHHHHHHHHh-----------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HH


Q ss_pred             HHHHHHHHHHH---HhhHHHHHHHHHHHHHHHhh
Q 004698          663 AALEKAAIVQE---RTSKEMQQREDVLREEFSST  693 (736)
Q Consensus       663 alle~~~~~~e---~~~e~~~~~~~~l~~e~~~~  693 (736)
                      +|.++|+..-.   +.....+.+...|++++.+.
T Consensus        62 sLFeEAN~MVa~ar~e~~~~e~kn~~L~~qL~d~   95 (97)
T 2eqb_B           62 SLFDEANNMVADARKEKYAIEILNKRLTEQLREK   95 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=90.54  E-value=0.081  Score=51.06  Aligned_cols=24  Identities=21%  Similarity=0.411  Sum_probs=21.8

Q ss_pred             EEEEEeeCCCCCChhHHHHHHhCC
Q 004698           71 IGVVSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        71 v~vVsv~G~~rtGKS~LlN~l~~~   94 (736)
                      +.+|+|+|+.++|||+|++.|++.
T Consensus         6 ~~~i~i~G~sGsGKTTl~~~l~~~   29 (174)
T 1np6_A            6 IPLLAFAAWSGTGKTTLLKKLIPA   29 (174)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHHh
Confidence            558999999999999999999875

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=90.39  E-value=0.13  Score=55.87  Aligned_cols=23  Identities=22%  Similarity=0.315  Sum_probs=21.3

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      +++|+||.|+||||||+.|.|-.
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~   53 (372)
T 1g29_1           31 FMILLGPSGCGKTTTLRMIAGLE   53 (372)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCcHHHHHHHHHHcCC
Confidence            78999999999999999999864

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=90.31  E-value=0.13  Score=54.70  Aligned_cols=25  Identities=20%  Similarity=0.166  Sum_probs=21.8

Q ss_pred             CEEEEEeeCCCCCChhHHHHHHhCC
Q 004698           70 PIGVVSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        70 ~v~vVsv~G~~rtGKS~LlN~l~~~   94 (736)
                      ...||+|+|+.++|||||++.|.+.
T Consensus        91 ~p~iigI~GpsGSGKSTl~~~L~~l  115 (321)
T 3tqc_A           91 VPYIIGIAGSVAVGKSTTSRVLKAL  115 (321)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHH
Confidence            4558999999999999999998754

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=90.22  E-value=0.16  Score=49.65  Aligned_cols=26  Identities=31%  Similarity=0.327  Sum_probs=22.6

Q ss_pred             CCEEEEEeeCCCCCChhHHHHHHhCC
Q 004698           69 EPIGVVSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        69 ~~v~vVsv~G~~rtGKS~LlN~l~~~   94 (736)
                      .+-.+|+|+|+.++|||||++.|.+.
T Consensus        20 ~~~~~i~i~G~~GsGKstl~~~l~~~   45 (201)
T 1rz3_A           20 AGRLVLGIDGLSRSGKTTLANQLSQT   45 (201)
T ss_dssp             SSSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            44568999999999999999999864

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=90.21  E-value=0.12  Score=51.12  Aligned_cols=22  Identities=18%  Similarity=0.359  Sum_probs=20.2

Q ss_pred             EEEeeCCCCCChhHHHHHHhCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~   94 (736)
                      +|+|+|+.+|||||+++.|.+.
T Consensus         7 ~i~i~G~~GsGKSTl~~~L~~~   28 (227)
T 1cke_A            7 VITIDGPSGAGKGTLCKAMAEA   28 (227)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            7999999999999999999764

>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=90.02  E-value=1.4  Score=40.35  Aligned_cols=36  Identities=17%  Similarity=0.031  Sum_probs=17.3

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhHH
Q 004698          660 EAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLA  695 (736)
Q Consensus       660 e~kalle~~~~~~e~~~e~~~~~~~~l~~e~~~~~~  695 (736)
                      +.++.+++.+...+..+.++...++.++++++.++.
T Consensus        96 ~~~~~~e~r~~~L~~ql~e~e~ll~~lq~QL~~LK~  131 (135)
T 2e7s_A           96 MEKYAIEILNKRLTEQLREKDMLLDTLTLQLKNLKK  131 (135)
T ss_dssp             HHHHHHHHHHHHHHHTTTHHHHCC------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345666777777777777777777777777777663

>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=90.02  E-value=0.83  Score=41.84  Aligned_cols=80  Identities=11%  Similarity=0.135  Sum_probs=36.0

Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 004698          566 INNLQGENISLREKSSSLSKTVDSLKNEISDWKRKY----DQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQAL  641 (736)
Q Consensus       566 ~~~Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~y----ee~~~~~~~~~~~~~~~i~~L~~k~~~~E~~~~~~~~q~~  641 (736)
                      +..|..++..-..+....+.....+.+|+.++....    ..-...+|.....++.+...|+.+..+.+.++.....|+.
T Consensus        48 ~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~e~ll~~lq~QL~  127 (135)
T 2e7s_A           48 VKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNLVADARMEKYAIEILNKRLTEQLREKDMLLDTLTLQLK  127 (135)
T ss_dssp             HHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTTHHHHCC--------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333344444444444444444443    3334445666667777777777777777777666666665


Q ss_pred             HHHH
Q 004698          642 SAQE  645 (736)
Q Consensus       642 ~~~~  645 (736)
                      .++.
T Consensus       128 ~LK~  131 (135)
T 2e7s_A          128 NLKK  131 (135)
T ss_dssp             ----
T ss_pred             HHHH
Confidence            5543

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=89.88  E-value=0.18  Score=49.08  Aligned_cols=27  Identities=26%  Similarity=0.138  Sum_probs=23.0

Q ss_pred             CCEEEEEeeCCCCCChhHHHHHHhCCC
Q 004698           69 EPIGVVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        69 ~~v~vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      .+=.+|.|+|+.++|||||++.|.+..
T Consensus        23 ~~g~~i~l~G~sGsGKSTl~~~La~~l   49 (200)
T 3uie_A           23 QKGCVIWVTGLSGSGKSTLACALNQML   49 (200)
T ss_dssp             SCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            444689999999999999999998753

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=89.87  E-value=0.13  Score=48.67  Aligned_cols=24  Identities=17%  Similarity=0.253  Sum_probs=21.1

Q ss_pred             EEEEEeeCCCCCChhHHHHHHhCC
Q 004698           71 IGVVSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        71 v~vVsv~G~~rtGKS~LlN~l~~~   94 (736)
                      -.+|.|+|+.++|||||++.|.+.
T Consensus         8 g~~i~l~G~~GsGKSTl~~~l~~~   31 (175)
T 1knq_A            8 HHIYVLMGVSGSGKSAVASEVAHQ   31 (175)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHh
Confidence            357999999999999999998764

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=89.68  E-value=0.12  Score=55.62  Aligned_cols=23  Identities=22%  Similarity=0.394  Sum_probs=21.3

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      +++|+||.|+||||||+.|.|-.
T Consensus        28 ~~~llGpnGsGKSTLLr~iaGl~   50 (348)
T 3d31_A           28 YFVILGPTGAGKTLFLELIAGFH   50 (348)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCccHHHHHHHHHcCC
Confidence            78999999999999999999864

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=89.67  E-value=0.22  Score=57.58  Aligned_cols=25  Identities=32%  Similarity=0.514  Sum_probs=22.1

Q ss_pred             EEEEEeeCCCCCChhHHHHHHhCCC
Q 004698           71 IGVVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        71 v~vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      +-.|+|+|+.|+|||+|||.|.|..
T Consensus        45 lp~iaIvG~nGsGKSTLL~~I~Gl~   69 (608)
T 3szr_A           45 LPAIAVIGDQSSGKSSVLEALSGVA   69 (608)
T ss_dssp             CCCEECCCCTTSCHHHHHHHHHSCC
T ss_pred             CCeEEEECCCCChHHHHHHHHhCCC
Confidence            3459999999999999999999963

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=89.67  E-value=0.18  Score=52.70  Aligned_cols=26  Identities=23%  Similarity=0.212  Sum_probs=22.8

Q ss_pred             CCEEEEEeeCCCCCChhHHHHHHhCC
Q 004698           69 EPIGVVSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        69 ~~v~vVsv~G~~rtGKS~LlN~l~~~   94 (736)
                      .+-.+|+|+|+.++|||||++.|.+.
T Consensus        29 ~~~~ii~I~G~sGsGKSTla~~L~~~   54 (290)
T 1odf_A           29 KCPLFIFFSGPQGSGKSFTSIQIYNH   54 (290)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            45568999999999999999998865

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=89.59  E-value=0.16  Score=48.97  Aligned_cols=29  Identities=24%  Similarity=0.365  Sum_probs=24.1

Q ss_pred             CEEEEEeeCCCCCChhHHHHHHhCCCCcccc
Q 004698           70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQV  100 (736)
Q Consensus        70 ~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~  100 (736)
                      ...+|+|+|+.+|||||+.+.|...  |+.+
T Consensus         7 ~~~~I~i~G~~GsGKST~~~~La~~--g~~~   35 (203)
T 1uf9_A            7 HPIIIGITGNIGSGKSTVAALLRSW--GYPV   35 (203)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHT--TCCE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHC--CCEE
Confidence            3457999999999999999999876  5543

>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}

Probab=89.55  E-value=9.1  Score=42.15  Aligned_cols=32  Identities=3%  Similarity=0.131  Sum_probs=15.6

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 004698          556 KKLADDYTSRINNLQGENISLREKSSSLSKTV  587 (736)
Q Consensus       556 kk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~l  587 (736)
                      ++++++++..+.+++.+-.+.......|..-|
T Consensus       403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (471)
T 3mq9_A          403 QQELTEAQKGFQDVEAQAATANHTVMALMASL  434 (471)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhHHHHHHHhhhcchhHHHHHHHH
Confidence            44444444445555555555555555544433

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=89.34  E-value=0.14  Score=48.77  Aligned_cols=23  Identities=17%  Similarity=0.213  Sum_probs=20.4

Q ss_pred             EEEEeeCCCCCChhHHHHHHhCC
Q 004698           72 GVVSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~~~   94 (736)
                      .+|.++||.|+|||+|++.+.+.
T Consensus        39 ~~~~l~G~~G~GKTtL~~~i~~~   61 (180)
T 3ec2_A           39 KGLTFVGSPGVGKTHLAVATLKA   61 (180)
T ss_dssp             CEEEECCSSSSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            46889999999999999998864

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=89.29  E-value=0.14  Score=53.82  Aligned_cols=24  Identities=29%  Similarity=0.192  Sum_probs=21.4

Q ss_pred             EEEEEeeCCCCCChhHHHHHHhCC
Q 004698           71 IGVVSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        71 v~vVsv~G~~rtGKS~LlN~l~~~   94 (736)
                      -.||+|+|+.|+|||||++.|.|.
T Consensus       102 g~vi~lvG~nGsGKTTll~~Lagl  125 (304)
T 1rj9_A          102 GRVVLVVGVNGVGKTTTIAKLGRY  125 (304)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHH
Confidence            458999999999999999999863

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=89.16  E-value=0.15  Score=55.12  Aligned_cols=26  Identities=23%  Similarity=0.461  Sum_probs=22.6

Q ss_pred             CCEEEEEeeCCCCCChhHHHHHHhCC
Q 004698           69 EPIGVVSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        69 ~~v~vVsv~G~~rtGKS~LlN~l~~~   94 (736)
                      .+=.+|+|+|+.|+||||||+.|+|.
T Consensus       134 ~~g~~i~ivG~~GsGKTTll~~l~~~  159 (372)
T 2ewv_A          134 RKMGLILVTGPTGSGKSTTIASMIDY  159 (372)
T ss_dssp             SSSEEEEEECSSSSSHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhh
Confidence            34468999999999999999999874

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=89.10  E-value=0.083  Score=50.83  Aligned_cols=23  Identities=17%  Similarity=0.457  Sum_probs=21.1

Q ss_pred             EEEEeeCCCCCChhHHHHHHhCC
Q 004698           72 GVVSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~~~   94 (736)
                      .+|+|+|+.++|||||++.|+|.
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~   25 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPI   25 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999999875

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=89.08  E-value=0.18  Score=57.40  Aligned_cols=23  Identities=30%  Similarity=0.544  Sum_probs=21.6

Q ss_pred             EEEEeeCCCCCChhHHHHHHhCC
Q 004698           72 GVVSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~~~   94 (736)
                      -|++|+|+.|+||||||+.|.|.
T Consensus        26 ei~gLiGpNGaGKSTLlkiL~Gl   48 (538)
T 3ozx_A           26 TILGVLGKNGVGKTTVLKILAGE   48 (538)
T ss_dssp             EEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CEEEEECCCCCcHHHHHHHHhcC
Confidence            48999999999999999999985

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=89.07  E-value=0.11  Score=55.93  Aligned_cols=23  Identities=17%  Similarity=0.342  Sum_probs=21.3

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      +++|+||.|+||||||+.|.|-.
T Consensus        33 ~~~llGpnGsGKSTLLr~iaGl~   55 (353)
T 1oxx_K           33 RFGILGPSGAGKTTFMRIIAGLD   55 (353)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            78999999999999999999864

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=89.05  E-value=0.15  Score=50.91  Aligned_cols=25  Identities=24%  Similarity=0.167  Sum_probs=22.1

Q ss_pred             CEEEEEeeCCCCCChhHHHHHHhCC
Q 004698           70 PIGVVSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        70 ~v~vVsv~G~~rtGKS~LlN~l~~~   94 (736)
                      +=.+|+|.|+.|+|||||++.|.|.
T Consensus        19 ~g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           19 QPFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhc
Confidence            3358999999999999999999876

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=89.02  E-value=0.2  Score=46.86  Aligned_cols=22  Identities=18%  Similarity=0.078  Sum_probs=19.9

Q ss_pred             EEEeeCCCCCChhHHHHHHhCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~   94 (736)
                      +|.|+|+.|+||||+.+.|...
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~~   24 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSKE   24 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            7899999999999999998754

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=89.01  E-value=0.15  Score=49.52  Aligned_cols=21  Identities=19%  Similarity=0.254  Sum_probs=20.1

Q ss_pred             EEEeeCCCCCChhHHHHHHhC
Q 004698           73 VVSVCGRARQGKSFILNQLLG   93 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~   93 (736)
                      +|+|+|+.++||||+++.|.+
T Consensus         3 ~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            3 RIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHH
Confidence            699999999999999999987

>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}

Probab=89.01  E-value=6.1  Score=43.61  Aligned_cols=62  Identities=11%  Similarity=0.099  Sum_probs=27.3

Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 004698          563 TSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKS  624 (736)
Q Consensus       563 e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~yee~~~~~~~~~~~~~~~i~~L~~  624 (736)
                      .+....|+++++.++.....++++-..-..-+--+....+...++..+..++++.+|+.|..
T Consensus       396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  457 (471)
T 3mq9_A          396 RNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNH  457 (471)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444555555555555555555544443333333333333333333333344444444433

>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A

Probab=89.00  E-value=3.3  Score=37.26  Aligned_cols=26  Identities=23%  Similarity=0.346  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698          633 LAAAREQALSAQEEVEEWKRKYGVAV  658 (736)
Q Consensus       633 ~~~~~~q~~~~~~E~~e~~~ky~~~~  658 (736)
                      +.++++.+..+..-+..+|.+|-.++
T Consensus        94 ~~e~E~kAqa~Eerf~KLKe~yteLr  119 (120)
T 3i00_A           94 LSEIERKAQANEQRYSKLKEKYSELV  119 (120)
T ss_dssp             --------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34555555555666666677776554

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=88.96  E-value=0.17  Score=55.13  Aligned_cols=23  Identities=35%  Similarity=0.453  Sum_probs=21.3

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      +++|+||.++||||||+.|+|-.
T Consensus        49 ~~~llGpsGsGKSTLLr~iaGl~   71 (390)
T 3gd7_A           49 RVGLLGRTGSGKSTLLSAFLRLL   71 (390)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTCS
T ss_pred             EEEEECCCCChHHHHHHHHhCCC
Confidence            79999999999999999999864

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=88.90  E-value=0.11  Score=49.88  Aligned_cols=31  Identities=23%  Similarity=0.495  Sum_probs=24.1

Q ss_pred             CEEEEEeeCCCCCChhHHHHHHhCC--CCcccc
Q 004698           70 PIGVVSVCGRARQGKSFILNQLLGR--SSGFQV  100 (736)
Q Consensus        70 ~v~vVsv~G~~rtGKS~LlN~l~~~--~~gF~~  100 (736)
                      .+.+|+|+|+.++|||+|++.|++.  ..|+.+
T Consensus         3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v   35 (169)
T 1xjc_A            3 AMNVWQVVGYKHSGKTTLMEKWVAAAVREGWRV   35 (169)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHhhHhcCCee
Confidence            3558999999999999999999864  234444

>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A

Probab=88.89  E-value=8.4  Score=32.99  Aligned_cols=81  Identities=17%  Similarity=0.206  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 004698          559 ADDYTSRINNLQGENISLREKSSSLSKTVDSLKNE-ISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAR  637 (736)
Q Consensus       559 ~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e-~~e~~~~yee~~~~~~~~~~~~~~~i~~L~~k~~~~E~~~~~~~  637 (736)
                      |..+..+++.+--++..|+..=..|+.+++.++.. ...              ...-|...|.+|+.++..+....+.+.
T Consensus        11 mq~LNdRlAsyIdKVR~LEqqN~~Le~~i~~l~~~~~~~--------------~~~~ye~~i~~Lr~~i~~~~~ek~~l~   76 (93)
T 3s4r_A           11 LQELNDRFANLIDKVRFLEQQNKILLAELEQLKGQGKSR--------------LGDLYEEEMRELRRQVDQLTNDKARVE   76 (93)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC--------------cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444555555555555555555554444333321 111              233466677777776666666677777


Q ss_pred             HHHHHHHHHHHHHHHH
Q 004698          638 EQALSAQEEVEEWKRK  653 (736)
Q Consensus       638 ~q~~~~~~E~~e~~~k  653 (736)
                      -+.++++.++.++|.|
T Consensus        77 ~e~dnl~~~~~~~k~K   92 (93)
T 3s4r_A           77 VERDNLAEDIMRLREK   92 (93)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            7777888888777765

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=88.83  E-value=0.33  Score=59.72  Aligned_cols=26  Identities=19%  Similarity=0.265  Sum_probs=23.1

Q ss_pred             CCEEEEEeeCCCCCChhHHHHHHhCC
Q 004698           69 EPIGVVSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        69 ~~v~vVsv~G~~rtGKS~LlN~l~~~   94 (736)
                      .+..-|+|+|....|||+|+|+|.+.
T Consensus       294 k~~lnIvIIGhvDvGKSTLInrLt~~  319 (1289)
T 3avx_A          294 KPHVNVGTIGHVDHGKTTLTAAITTV  319 (1289)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCeeEEEEEcCCCCCHHHHHHHHHhh
Confidence            46677999999999999999999864

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=88.81  E-value=0.16  Score=53.30  Aligned_cols=23  Identities=30%  Similarity=0.440  Sum_probs=21.3

Q ss_pred             EEEEeeCCCCCChhHHHHHHhCC
Q 004698           72 GVVSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~~~   94 (736)
                      .||+++|+.|+|||||++.|.|.
T Consensus       101 ~vi~lvG~nGsGKTTll~~Lag~  123 (302)
T 3b9q_A          101 AVIMIVGVNGGGKTTSLGKLAHR  123 (302)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHH
Confidence            58999999999999999999874

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=88.69  E-value=0.17  Score=49.55  Aligned_cols=41  Identities=12%  Similarity=0.240  Sum_probs=29.9

Q ss_pred             eeeCHHHHHHhhcc--CCCEEEEEeeCCCCCChhHHHHHHhCC
Q 004698           54 FRMDPEAVAALQLV--KEPIGVVSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        54 l~l~~eAl~~L~~i--~~~v~vVsv~G~~rtGKS~LlN~l~~~   94 (736)
                      +.-+.+..+.+...  ...+.+|+|+|..++|||+|+|.|++.
T Consensus        11 l~~~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~   53 (221)
T 2wsm_A           11 LAENKRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIER   53 (221)
T ss_dssp             CHHHHHHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred             HhhcHHHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHH
Confidence            44455555555432  245678999999999999999999864

>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A

Probab=88.41  E-value=8.6  Score=42.35  Aligned_cols=42  Identities=19%  Similarity=0.202  Sum_probs=25.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 004698          583 LSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKS  624 (736)
Q Consensus       583 L~~~le~lk~e~~e~~~~yee~~~~~~~~~~~~~~~i~~L~~  624 (736)
                      ...+-+++++..+.-+..|++.+.+-.++...|++..++.+.
T Consensus        46 i~aeNeaikkrNa~aka~Ye~~l~kY~~dlakY~~~~AeY~~   87 (497)
T 3iox_A           46 LTAENTAIKKRNADAKADYEAKLAKYQADLAKYQKDLADYPV   87 (497)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444445555666666677776666665556666666555555

>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1

Probab=88.32  E-value=5.3  Score=33.24  Aligned_cols=37  Identities=19%  Similarity=0.272  Sum_probs=16.9

Q ss_pred             HHhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 004698          673 ERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQ  713 (736)
Q Consensus       673 e~~~e~~~~~~~~l~~e~~~~~~e~~~~~~~~~~k~~~~~~  713 (736)
                      +..+..++.+...+++++..+...    +...+.||+.+++
T Consensus        40 E~ev~~L~kKiq~lE~eld~~ee~----l~~a~~kLeeaek   76 (81)
T 1ic2_A           40 EDELVALQKKLKGTEDELDKYSES----LKDAQEKLELADK   76 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence            333444444444444444433322    3555555655544

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=88.11  E-value=0.23  Score=56.54  Aligned_cols=22  Identities=36%  Similarity=0.536  Sum_probs=20.9

Q ss_pred             EEEeeCCCCCChhHHHHHHhCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~   94 (736)
                      +++|+|+.|+||||||+.|.|.
T Consensus        49 ~~~LvG~NGaGKSTLlk~l~Gl   70 (538)
T 1yqt_A           49 VVGIVGPNGTGKSTAVKILAGQ   70 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            7999999999999999999985

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=88.05  E-value=0.23  Score=57.37  Aligned_cols=22  Identities=36%  Similarity=0.525  Sum_probs=21.0

Q ss_pred             EEEeeCCCCCChhHHHHHHhCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~   94 (736)
                      +++|+||.|+||||||+.|.|.
T Consensus       105 i~~LvGpNGaGKSTLLkiL~Gl  126 (608)
T 3j16_B          105 VLGLVGTNGIGKSTALKILAGK  126 (608)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHhcC
Confidence            7999999999999999999985

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=88.04  E-value=0.2  Score=53.36  Aligned_cols=25  Identities=20%  Similarity=0.194  Sum_probs=22.2

Q ss_pred             CEEEEEeeCCCCCChhHHHHHHhCC
Q 004698           70 PIGVVSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        70 ~v~vVsv~G~~rtGKS~LlN~l~~~   94 (736)
                      +=.||+++|+.|+|||||++.|.|.
T Consensus       128 ~g~vi~lvG~nGaGKTTll~~Lag~  152 (328)
T 3e70_C          128 KPYVIMFVGFNGSGKTTTIAKLANW  152 (328)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4468999999999999999999864

>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1

Probab=87.89  E-value=6.2  Score=32.79  Aligned_cols=33  Identities=27%  Similarity=0.300  Sum_probs=17.5

Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 004698          614 QVCSEIEVLKSRSTAAEARLAAAREQALSAQEE  646 (736)
Q Consensus       614 ~~~~~i~~L~~k~~~~E~~~~~~~~q~~~~~~E  646 (736)
                      ....++..|+.|++.+|+.+..+..++..++..
T Consensus        38 ~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~k   70 (81)
T 1ic2_A           38 QLEDELVALQKKLKGTEDELDKYSESLKDAQEK   70 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444555555555555555555555555555444

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=87.64  E-value=16  Score=33.09  Aligned_cols=68  Identities=18%  Similarity=0.204  Sum_probs=27.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 004698          523 IEDNMKLLKKQLEDSERYKSEYLK---RYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSL  590 (736)
Q Consensus       523 ~e~e~~~lk~~Le~~e~~~~e~~k---~~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~l  590 (736)
                      .+.++..++..+...+....+.+.   ++....+++...+..-....++.+-.+..+..+...|...+..+
T Consensus        18 ~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el   88 (129)
T 2fxo_A           18 MKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEM   88 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            444455555555444444333332   33333333333333333333333444444444444444443333

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=87.42  E-value=0.26  Score=56.88  Aligned_cols=22  Identities=32%  Similarity=0.525  Sum_probs=21.0

Q ss_pred             EEEeeCCCCCChhHHHHHHhCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~   94 (736)
                      +++|+|+.|+||||||+.|.|.
T Consensus       119 ~~~LiG~NGsGKSTLlkiL~Gl  140 (607)
T 3bk7_A          119 VVGIVGPNGTGKTTAVKILAGQ  140 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCChHHHHHHHHhCC
Confidence            7999999999999999999985

>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*

Probab=87.36  E-value=2.7  Score=42.58  Aligned_cols=13  Identities=8%  Similarity=0.041  Sum_probs=5.2

Q ss_pred             HHHHHHHHHHHHH
Q 004698          461 NVVKVLDGLISEY  473 (736)
Q Consensus       461 ~~~~~~~~ll~~Y  473 (736)
                      .+...+..++.+.
T Consensus        10 ~v~~~~~~Y~~q~   22 (243)
T 2a01_A           10 RVKDLATVYVDVL   22 (243)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            3344444444433

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=87.35  E-value=0.3  Score=45.95  Aligned_cols=22  Identities=18%  Similarity=0.303  Sum_probs=20.0

Q ss_pred             EEEEeeCCCCCChhHHHHHHhC
Q 004698           72 GVVSVCGRARQGKSFILNQLLG   93 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~~   93 (736)
                      .+|.|+|+.+|||||+.+.|..
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            3689999999999999999986

>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}

Probab=87.26  E-value=40  Score=37.33  Aligned_cols=104  Identities=17%  Similarity=0.167  Sum_probs=60.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698          525 DNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQV  604 (736)
Q Consensus       525 ~e~~~lk~~Le~~e~~~~e~~k~~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~yee~  604 (736)
                      .....+.+.+....+.+...++.|+..-.+.+    .+..+....+.+...-...+..+...++..+.++.+-+..|...
T Consensus       136 ~~~~k~qk~l~~~~~~l~KaKk~Y~~~cke~e----~a~~~~~~a~~d~~~t~k~~eK~~~k~~k~~~~~~~a~~~Y~~~  211 (486)
T 3haj_A          136 DGFRKAQKPWAKKLKEVEAAKKAHHAACKEEK----LAISREANSKADPSLNPEQLKKLQDKIEKCKQDVLKTKEKYEKS  211 (486)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHCCCSCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444455555555555544432    22111111111111112445566677777788888888888888


Q ss_pred             HHHhhHHHHHHHHHHHHHhhhhHHHHHH
Q 004698          605 LTKQKAMEDQVCSEIEVLKSRSTAAEAR  632 (736)
Q Consensus       605 ~~~~~~~~~~~~~~i~~L~~k~~~~E~~  632 (736)
                      +...++....|...+..+=..++++|+.
T Consensus       212 v~~~n~~~~~y~~~~~~~~~~lQ~lEee  239 (486)
T 3haj_A          212 LKELDQGTPQYMENMEQVFEQCQQFEEK  239 (486)
T ss_dssp             HHHHHTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888777778888887766677777766

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=87.10  E-value=7.9  Score=32.23  Aligned_cols=37  Identities=11%  Similarity=0.193  Sum_probs=24.6

Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698          567 NNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQ  603 (736)
Q Consensus       567 ~~Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~yee  603 (736)
                      ..|+.|+..+-+.+..|...++.+|.+...+....++
T Consensus         9 eqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e   45 (81)
T 2jee_A            9 EKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQN   45 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566677777777777777777777766666555544

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=87.00  E-value=0.21  Score=53.63  Aligned_cols=25  Identities=28%  Similarity=0.405  Sum_probs=22.5

Q ss_pred             EEEEEeeCCCCCChhHHHHHHhCCC
Q 004698           71 IGVVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        71 v~vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      ...++|+|+.++|||||++.|.|..
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl~  194 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAVF  194 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHHh
Confidence            5689999999999999999999863

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=86.99  E-value=0.25  Score=53.32  Aligned_cols=23  Identities=30%  Similarity=0.440  Sum_probs=21.3

Q ss_pred             EEEEeeCCCCCChhHHHHHHhCC
Q 004698           72 GVVSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~~~   94 (736)
                      .||+++|+.|+|||||++.|.|.
T Consensus       158 ~vi~lvG~nGsGKTTll~~Lag~  180 (359)
T 2og2_A          158 AVIMIVGVNGGGKTTSLGKLAHR  180 (359)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEEEcCCCChHHHHHHHHHhh
Confidence            48999999999999999999874

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=86.95  E-value=0.26  Score=47.86  Aligned_cols=23  Identities=26%  Similarity=0.348  Sum_probs=20.4

Q ss_pred             EEEEeeCCCCCChhHHHHHHhCC
Q 004698           72 GVVSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~~~   94 (736)
                      .+|.|+|+.|+|||||.+.|.+.
T Consensus        19 ~~I~l~G~~GsGKSTla~~L~~~   41 (202)
T 3t61_A           19 GSIVVMGVSGSGKSSVGEAIAEA   41 (202)
T ss_dssp             SCEEEECSTTSCHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            47899999999999999998754

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=86.95  E-value=0.32  Score=46.97  Aligned_cols=27  Identities=11%  Similarity=0.160  Sum_probs=22.7

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCCCccc
Q 004698           73 VVSVCGRARQGKSFILNQLLGRSSGFQ   99 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~~gF~   99 (736)
                      +|.|+|+.+|||||+.+.|.....|+.
T Consensus         6 ~I~l~G~~GsGKsT~~~~L~~~l~g~~   32 (204)
T 2v54_A            6 LIVFEGLDKSGKTTQCMNIMESIPANT   32 (204)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHTSCGGG
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHCCCc
Confidence            689999999999999999987654443

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=86.93  E-value=0.26  Score=48.33  Aligned_cols=22  Identities=14%  Similarity=0.445  Sum_probs=19.9

Q ss_pred             EEEeeCCCCCChhHHHHHHhCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~   94 (736)
                      ++.|+|+.++|||+|++.|++.
T Consensus        25 ~~~i~G~~GsGKTtl~~~l~~~   46 (235)
T 2w0m_A           25 FIALTGEPGTGKTIFSLHFIAK   46 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            6889999999999999999854

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=86.81  E-value=0.3  Score=55.55  Aligned_cols=23  Identities=22%  Similarity=0.421  Sum_probs=21.4

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      +|+|+|+.++||||||+.|+|..
T Consensus       296 i~~i~G~nGsGKSTLl~~l~Gl~  318 (538)
T 3ozx_A          296 IIGILGPNGIGKTTFARILVGEI  318 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            79999999999999999999864

>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A

Probab=86.69  E-value=9.6  Score=33.49  Aligned_cols=77  Identities=18%  Similarity=0.257  Sum_probs=48.6

Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004698          513 RSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYL------------------KRYDDAINDKKKLADDYTSRINNLQGENI  574 (736)
Q Consensus       513 ~~~L~~k~es~e~e~~~lk~~Le~~e~~~~e~~------------------k~~e~~In~lkk~~e~~e~~~~~Le~k~~  574 (736)
                      .+.++.++..+...+..+..++.+.+....+..                  +..++.+..+.+..+.++.++..|+.++.
T Consensus        15 ~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~~l~~d~~vy~~iG~vfv~~~~~ea~~~L~~~~e~ie~~i~~le~~~~   94 (117)
T 2zqm_A           15 LESYQQQLQLVVQQKQKVQLELTEAKKALDEIESLPDDAVVYKTVGTLIVKTTKDKAVAELKEKIETLEVRLNALERQEK   94 (117)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHhhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555666677777777777777777766666665                  25666777666666666666666655555


Q ss_pred             HHHHHHHHHHHHHHH
Q 004698          575 SLREKSSSLSKTVDS  589 (736)
Q Consensus       575 sl~~r~~~L~~~le~  589 (736)
                      .+..++..+...+..
T Consensus        95 ~l~~~l~~lk~~l~~  109 (117)
T 2zqm_A           95 KLNEKLKELTAQIQS  109 (117)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            555555555555443

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=86.44  E-value=0.32  Score=56.15  Aligned_cols=23  Identities=26%  Similarity=0.462  Sum_probs=21.4

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      +|+|+|+.|+||||||+.|+|..
T Consensus       384 i~~i~G~NGsGKSTLlk~l~Gl~  406 (607)
T 3bk7_A          384 VIGIVGPNGIGKTTFVKMLAGVE  406 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            79999999999999999999864

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=86.44  E-value=0.27  Score=55.08  Aligned_cols=23  Identities=22%  Similarity=0.281  Sum_probs=21.4

Q ss_pred             EEEEeeCCCCCChhHHHHHHhCC
Q 004698           72 GVVSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~~~   94 (736)
                      .+++|+|+.|+||||||+.|.|-
T Consensus        30 e~~~liG~nGsGKSTLl~~l~Gl   52 (483)
T 3euj_A           30 LVTTLSGGNGAGKSTTMAGFVTA   52 (483)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCcHHHHHHHHhcC
Confidence            78999999999999999999873

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=86.40  E-value=0.33  Score=55.25  Aligned_cols=23  Identities=26%  Similarity=0.462  Sum_probs=21.5

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      +|+|+|+.|+||||||+.|+|..
T Consensus       314 ~~~i~G~NGsGKSTLlk~l~Gl~  336 (538)
T 1yqt_A          314 VIGIVGPNGIGKTTFVKMLAGVE  336 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            79999999999999999999864

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=86.35  E-value=0.27  Score=55.10  Aligned_cols=23  Identities=22%  Similarity=0.278  Sum_probs=21.1

Q ss_pred             EEEEeeCCCCCChhHHHHHHhCC
Q 004698           72 GVVSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~~~   94 (736)
                      .||+|+|+.|+|||||++.|.|.
T Consensus       294 eVI~LVGpNGSGKTTLl~~LAgl  316 (503)
T 2yhs_A          294 FVILMVGVNGVGKTTTIGKLARQ  316 (503)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCcccHHHHHHHHHHH
Confidence            48999999999999999999874

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=86.24  E-value=0.36  Score=47.37  Aligned_cols=42  Identities=12%  Similarity=0.279  Sum_probs=29.5

Q ss_pred             ceeeCHHHHHHhhcc--CCCEEEEEeeCCCCCChhHHHHHHhCC
Q 004698           53 KFRMDPEAVAALQLV--KEPIGVVSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        53 ~l~l~~eAl~~L~~i--~~~v~vVsv~G~~rtGKS~LlN~l~~~   94 (736)
                      .+.-+++..+.+...  ..++.+|+|+|..++|||+|+|+|++.
T Consensus        18 ~~~~~~~~a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~   61 (226)
T 2hf9_A           18 ILKANKRLADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDN   61 (226)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             hhhhhHHHHHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            344444444444432  245678999999999999999999864

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=86.17  E-value=0.31  Score=55.90  Aligned_cols=23  Identities=30%  Similarity=0.366  Sum_probs=21.3

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      +|+|+|+.|+|||||++.|+|-.
T Consensus       371 ~~~ivG~sGsGKSTLl~~l~g~~  393 (582)
T 3b60_A          371 TVALVGRSGSGKSTIASLITRFY  393 (582)
T ss_dssp             EEEEEECTTSSHHHHHHHHTTTT
T ss_pred             EEEEECCCCCCHHHHHHHHhhcc
Confidence            68999999999999999999864

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=86.09  E-value=0.32  Score=55.74  Aligned_cols=23  Identities=35%  Similarity=0.397  Sum_probs=21.3

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      +|+|+|+.|+|||||++.|+|-.
T Consensus       371 ~~~ivG~sGsGKSTll~~l~g~~  393 (582)
T 3b5x_A          371 TVALVGRSGSGKSTIANLFTRFY  393 (582)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            79999999999999999999864

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=86.09  E-value=0.36  Score=47.40  Aligned_cols=22  Identities=27%  Similarity=0.382  Sum_probs=20.2

Q ss_pred             EEEEeeCCCCCChhHHHHHHhC
Q 004698           72 GVVSVCGRARQGKSFILNQLLG   93 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~~   93 (736)
                      .+|+|+|+.+|||||+++.|.+
T Consensus         5 ~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            5 YIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999976

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=86.04  E-value=0.24  Score=52.31  Aligned_cols=63  Identities=19%  Similarity=0.226  Sum_probs=36.9

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeec-cccccccCCCCceEEEEeecCCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWS-APLKRTALDGTEYNLLLLDSEGI  138 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~-~p~~~~~~~g~~~~v~llDteG~  138 (736)
                      +|.|+||+++|||+|...|+....|.-++......-+|+-+.. +|-+. ..+|  +...|+|...+
T Consensus         5 ~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~QvYr~~~igTakp~~~-E~~g--vphhlid~~~~   68 (322)
T 3exa_A            5 LVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSMQVYRGMDIGTAKITAE-EMDG--VPHHLIDIKDP   68 (322)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHTTTEEEEECCGGGGBTTCCTTTTCCCHH-HHTT--CCEESSSCBCT
T ss_pred             EEEEECCCcCCHHHHHHHHHHhCccceeecCcccceeeeeecCCCCCHH-HHcC--CCEEEeccCCh
Confidence            6889999999999999999866543322222222333433332 22211 1123  55677888754

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=86.00  E-value=0.32  Score=55.95  Aligned_cols=24  Identities=29%  Similarity=0.375  Sum_probs=21.7

Q ss_pred             EEEEeeCCCCCChhHHHHHHhCCC
Q 004698           72 GVVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      -+|+|+|+.|+|||||++.|+|-.
T Consensus       382 ~~~~ivG~sGsGKSTll~~l~g~~  405 (598)
T 3qf4_B          382 QKVALVGPTGSGKTTIVNLLMRFY  405 (598)
T ss_dssp             CEEEEECCTTSSTTHHHHHHTTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCc
Confidence            379999999999999999999864

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=85.83  E-value=0.39  Score=45.56  Aligned_cols=21  Identities=24%  Similarity=0.224  Sum_probs=19.4

Q ss_pred             EEEeeCCCCCChhHHHHHHhC
Q 004698           73 VVSVCGRARQGKSFILNQLLG   93 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~   93 (736)
                      +|.|+|+.++||||+.+.|..
T Consensus         5 ~I~i~G~~GsGKsT~~~~L~~   25 (192)
T 1kht_A            5 VVVVTGVPGVGSTTSSQLAMD   25 (192)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999964

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=85.77  E-value=0.4  Score=46.08  Aligned_cols=22  Identities=23%  Similarity=0.388  Sum_probs=20.0

Q ss_pred             EEEeeCCCCCChhHHHHHHhCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~   94 (736)
                      +|+|+|+.++||||+.+.|...
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~   23 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKK   23 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHHh
Confidence            5899999999999999999764

>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A

Probab=85.67  E-value=4.2  Score=36.58  Aligned_cols=58  Identities=24%  Similarity=0.284  Sum_probs=30.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698          587 VDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWK  651 (736)
Q Consensus       587 le~lk~e~~e~~~~yee~~~~~~~~~~~~~~~i~~L~~k~~~~E~~~~~~~~q~~~~~~E~~e~~  651 (736)
                      ++.|+.++..++...+.....+       +..+.+|++++..+|..+...+.+.+.+..|.+.++
T Consensus        17 Ie~Lkreie~lk~ele~l~~E~-------q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr   74 (120)
T 3i00_A           17 IERLYREISGLKAQLENMKTES-------QRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLR   74 (120)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445555555555554443333       333444455555555566666666666666654443

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=85.65  E-value=0.37  Score=55.58  Aligned_cols=24  Identities=21%  Similarity=0.419  Sum_probs=21.9

Q ss_pred             EEEEeeCCCCCChhHHHHHHhCCC
Q 004698           72 GVVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      -+|+|+|+.|+||||||+.|.|-.
T Consensus       379 Eiv~iiG~NGsGKSTLlk~l~Gl~  402 (608)
T 3j16_B          379 EILVMMGENGTGKTTLIKLLAGAL  402 (608)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHTSS
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCC
Confidence            479999999999999999999864

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=85.58  E-value=0.81  Score=48.64  Aligned_cols=58  Identities=22%  Similarity=0.181  Sum_probs=35.0

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCccc
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAY  141 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~  141 (736)
                      |.++|..++|||.|++++.+..  |.-....-..|-|+-.-.  +      +..+.+-+.||.|...+
T Consensus         2 IvllGdsgvGKTSLl~~~~~~~--~~~~~~~~~~Tig~~~~~--v------~~~v~LqIWDTAGQErf   59 (331)
T 3r7w_B            2 VLLMGVRRCGKSSICKVVFHNM--QPLDTLYLESTSNPSLEH--F------STLIDLAVMELPGQLNY   59 (331)
T ss_dssp             EEEECSTTSSTTHHHHHHHSCC--CSGGGTTCCCCCSCCCEE--E------CSSSCEEEEECCSCSSS
T ss_pred             EEEECCCCCCHHHHHHHHHcCC--CCCccceecCeeeeeeEE--E------ccEEEEEEEECCCchhc
Confidence            5688999999999999988653  211000112244443321  1      12367889999997543

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=85.55  E-value=0.24  Score=55.16  Aligned_cols=23  Identities=22%  Similarity=0.341  Sum_probs=20.9

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      +|+|+|+.++|||||++.|+|..
T Consensus       140 ~v~IvGpnGsGKSTLlr~L~Gl~  162 (460)
T 2npi_A          140 RVVIVGGSQTGKTSLSRTLCSYA  162 (460)
T ss_dssp             CEEEEESTTSSHHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhCcc
Confidence            58999999999999999999863

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=85.51  E-value=0.38  Score=45.68  Aligned_cols=23  Identities=26%  Similarity=0.239  Sum_probs=20.3

Q ss_pred             EEEEeeCCCCCChhHHHHHHhCC
Q 004698           72 GVVSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~~~   94 (736)
                      .+|.|+|+.++||||+.+.|...
T Consensus         2 ~~I~i~G~~GsGKsT~~~~L~~~   24 (194)
T 1nks_A            2 KIGIVTGIPGVGKSTVLAKVKEI   24 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            37899999999999999999753

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=85.39  E-value=0.3  Score=55.97  Aligned_cols=23  Identities=26%  Similarity=0.300  Sum_probs=21.2

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      +|+|+||.|+|||||++.|+|-.
T Consensus       369 ~~~ivG~sGsGKSTll~~l~g~~  391 (578)
T 4a82_A          369 TVAFVGMSGGGKSTLINLIPRFY  391 (578)
T ss_dssp             EEEEECSTTSSHHHHHTTTTTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            79999999999999999999864

>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1

Probab=85.18  E-value=13  Score=32.57  Aligned_cols=33  Identities=9%  Similarity=0.003  Sum_probs=14.7

Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 004698          614 QVCSEIEVLKSRSTAAEARLAAAREQALSAQEE  646 (736)
Q Consensus       614 ~~~~~i~~L~~k~~~~E~~~~~~~~q~~~~~~E  646 (736)
                      .+..++..++.++..+++.+..+.++...+..+
T Consensus        68 ~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~  100 (112)
T 1l8d_A           68 KYHLDLNNSKNTLAKLIDRKSELERELRRIDME  100 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444555555554444444444444444443333

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=85.13  E-value=18  Score=39.99  Aligned_cols=19  Identities=26%  Similarity=0.429  Sum_probs=8.8

Q ss_pred             HHHHHHHHHHhhhHHHHHH
Q 004698          510 GSERSSLMLKYRSIEDNMK  528 (736)
Q Consensus       510 ~~e~~~L~~k~es~e~e~~  528 (736)
                      +.....|...|.+...+..
T Consensus       338 HrNLV~L~gyC~s~~~~~~  356 (487)
T 3oja_A          338 QREIDALKEQYRTVIDQVT  356 (487)
T ss_dssp             HHHHHHHHHHTCCCCCHHH
T ss_pred             ccchhhHHHHhcChHHHHH
Confidence            3345555555554444333

>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens}

Probab=84.92  E-value=51  Score=36.29  Aligned_cols=71  Identities=13%  Similarity=0.105  Sum_probs=46.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 004698          573 NISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSA  643 (736)
Q Consensus       573 ~~sl~~r~~~L~~~le~lk~e~~e~~~~yee~~~~~~~~~~~~~~~i~~L~~k~~~~E~~~~~~~~q~~~~  643 (736)
                      +..+..+...|..++++-...+..+...-++.+....-.++..+..++.|+++-..+.+.+..-+.++..+
T Consensus       128 v~~l~~khq~l~~EL~~~e~~i~~v~~~G~~Li~~~Hpas~~I~~r~~~L~~~W~~L~~l~~~R~~~L~~a  198 (450)
T 3r6n_A          128 IAQKQEAFSIRMSQLEVKEKELNKLKQESDQLVLNQHPASDKIEAYMDTLQTQWSWILQITKCIDVHLKEN  198 (450)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555666666677776666677776666777666666667777777777776666666655555444443

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=84.76  E-value=0.34  Score=50.13  Aligned_cols=22  Identities=27%  Similarity=0.250  Sum_probs=20.3

Q ss_pred             EEEeeCCCCCChhHHHHHHhCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~   94 (736)
                      +++|+|+.++|||+|++.|+|.
T Consensus        37 ~~~i~G~~G~GKTTl~~~ia~~   58 (296)
T 1cr0_A           37 VIMVTSGSGMGKSTFVRQQALQ   58 (296)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            6899999999999999999875

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=84.74  E-value=0.36  Score=55.44  Aligned_cols=23  Identities=30%  Similarity=0.408  Sum_probs=21.3

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      +|+|+|+.|+|||||++.|+|-.
T Consensus       371 ~~~ivG~sGsGKSTll~~l~g~~  393 (587)
T 3qf4_A          371 LVAVLGETGSGKSTLMNLIPRLI  393 (587)
T ss_dssp             EEEEECSSSSSHHHHHHTTTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCc
Confidence            79999999999999999999864

>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A

Probab=84.67  E-value=7.5  Score=32.75  Aligned_cols=26  Identities=8%  Similarity=0.322  Sum_probs=12.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698          581 SSLSKTVDSLKNEISDWKRKYDQVLT  606 (736)
Q Consensus       581 ~~L~~~le~lk~e~~e~~~~yee~~~  606 (736)
                      ..++.++..++.+.+...+.|++.++
T Consensus        38 ~~lE~el~~~r~e~~~ql~EYq~Lln   63 (86)
T 1x8y_A           38 AEKEREMAEMRARMQQQLDEYQELLD   63 (86)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444445555555555444

>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}

Probab=84.67  E-value=8.9  Score=31.72  Aligned_cols=49  Identities=12%  Similarity=0.110  Sum_probs=34.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 004698          548 YDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISD  596 (736)
Q Consensus       548 ~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e~~e  596 (736)
                      +=.+||+++-.+++++++..++|.++.+.-+.++.|.++|+.-..++.-
T Consensus        24 L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~r   72 (81)
T 3qh9_A           24 LLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIER   72 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHH
Confidence            3456777777778888888888888877777777777776655544433

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=84.63  E-value=0.47  Score=48.26  Aligned_cols=23  Identities=17%  Similarity=0.135  Sum_probs=20.6

Q ss_pred             EEEEeeCCCCCChhHHHHHHhCC
Q 004698           72 GVVSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~~~   94 (736)
                      .+|.|+|+.+||||+|...|.+.
T Consensus         2 ~li~I~G~~GSGKSTla~~La~~   24 (253)
T 2ze6_A            2 LLHLIYGPTCSGKTDMAIQIAQE   24 (253)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHhc
Confidence            47899999999999999999754

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=84.61  E-value=0.49  Score=44.93  Aligned_cols=21  Identities=24%  Similarity=0.227  Sum_probs=19.4

Q ss_pred             EEEeeCCCCCChhHHHHHHhC
Q 004698           73 VVSVCGRARQGKSFILNQLLG   93 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~   93 (736)
                      +|.++|+.+|||||+.+.|..
T Consensus         6 ~I~l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            6 AVIFLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999974

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=84.40  E-value=0.41  Score=51.92  Aligned_cols=24  Identities=21%  Similarity=0.149  Sum_probs=21.3

Q ss_pred             EEEEeeCCCCCChhHHHHHHhCCC
Q 004698           72 GVVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      .+|+|+||.|+|||+|++.|.|..
T Consensus       170 ~~i~l~G~~GsGKSTl~~~l~~~~  193 (377)
T 1svm_A          170 RYWLFKGPIDSGKTTLAAALLELC  193 (377)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhc
Confidence            378999999999999999999754

>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}

Probab=84.30  E-value=17  Score=34.03  Aligned_cols=71  Identities=14%  Similarity=0.186  Sum_probs=47.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 004698          524 EDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEI  594 (736)
Q Consensus       524 e~e~~~lk~~Le~~e~~~~e~~k~~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e~  594 (736)
                      .++.+.+.+..+++...+.+|.++++.++.+.+.++..++.-+..++..+...+.++...+..++.++.-+
T Consensus        67 k~~~e~l~~~veeA~~~L~eYn~rL~~E~~dR~~L~~~L~~~~~~~~~~l~e~e~~leeyK~Kl~rv~~vk  137 (152)
T 4fla_A           67 KEAAERLSKTVDEACLLLAEYNGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLEEYKQKLARVTQVR  137 (152)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566777888888888999999999999988777777665555555555555555444444444443333

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=84.29  E-value=0.23  Score=48.34  Aligned_cols=22  Identities=23%  Similarity=0.478  Sum_probs=20.0

Q ss_pred             EEEeeCCCCCChhHHHHHHhCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~   94 (736)
                      +|+|+|+.+||||||++.|...
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~   23 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGA   23 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            6899999999999999999754

>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B

Probab=84.28  E-value=13  Score=32.07  Aligned_cols=75  Identities=9%  Similarity=0.145  Sum_probs=49.4

Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004698          513 RSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYL------------------KRYDDAINDKKKLADDYTSRINNLQGENI  574 (736)
Q Consensus       513 ~~~L~~k~es~e~e~~~lk~~Le~~e~~~~e~~------------------k~~e~~In~lkk~~e~~e~~~~~Le~k~~  574 (736)
                      .+.++.++..+...+..+..++.+.+....+..                  +..++.+..+.+..+.++.++..++.++.
T Consensus        10 f~~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL~~l~~d~~vy~~iG~vfv~~~~~e~~~~L~~~~e~i~~~i~~le~~~~   89 (107)
T 1fxk_A           10 FQQLQQQAQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAKDELTEELQEKLETLQLREKTIERQEE   89 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHhHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455666666677777777777777766666665                  25667777666666766666666666666


Q ss_pred             HHHHHHHHHHHHH
Q 004698          575 SLREKSSSLSKTV  587 (736)
Q Consensus       575 sl~~r~~~L~~~l  587 (736)
                      .+..++..+...+
T Consensus        90 ~~~~~l~~lk~~l  102 (107)
T 1fxk_A           90 RVMKKLQEMQVNI  102 (107)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            6666666665554

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=84.27  E-value=0.52  Score=44.81  Aligned_cols=22  Identities=27%  Similarity=0.241  Sum_probs=19.6

Q ss_pred             EEEEeeCCCCCChhHHHHHHhC
Q 004698           72 GVVSVCGRARQGKSFILNQLLG   93 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~~   93 (736)
                      .+|.|+|+.+|||||+...|..
T Consensus         4 ~~I~l~G~~GsGKsT~a~~L~~   25 (196)
T 1tev_A            4 LVVFVLGGPGAGKGTQCARIVE   25 (196)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999999864

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=84.17  E-value=0.53  Score=44.31  Aligned_cols=22  Identities=27%  Similarity=0.312  Sum_probs=20.0

Q ss_pred             EEEeeCCCCCChhHHHHHHhCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~   94 (736)
                      +|-|+|+.+|||||+.+.|...
T Consensus         5 ~i~l~G~~GsGKST~a~~La~~   26 (178)
T 1qhx_A            5 MIILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            6889999999999999999864

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=84.10  E-value=0.43  Score=46.48  Aligned_cols=21  Identities=24%  Similarity=0.134  Sum_probs=20.0

Q ss_pred             EEEeeCCCCCChhHHHHHHhC
Q 004698           73 VVSVCGRARQGKSFILNQLLG   93 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~   93 (736)
                      ++.|+|+.++|||+|+..|++
T Consensus        22 ~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           22 LTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            789999999999999999987

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=84.04  E-value=0.53  Score=45.64  Aligned_cols=25  Identities=12%  Similarity=0.170  Sum_probs=21.3

Q ss_pred             CEEEEEeeCCCCCChhHHHHHHhCC
Q 004698           70 PIGVVSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        70 ~v~vVsv~G~~rtGKS~LlN~l~~~   94 (736)
                      +..+|.|+|+.++||||+...|.+.
T Consensus        24 ~~~~i~l~G~~GsGKsTl~~~La~~   48 (199)
T 3vaa_A           24 AMVRIFLTGYMGAGKTTLGKAFARK   48 (199)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHH
Confidence            3347899999999999999999754

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=83.96  E-value=0.54  Score=44.57  Aligned_cols=23  Identities=22%  Similarity=0.147  Sum_probs=20.3

Q ss_pred             EEEEeeCCCCCChhHHHHHHhCC
Q 004698           72 GVVSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~~~   94 (736)
                      .+|.++|+.++||||+++.|.+.
T Consensus         6 ~~i~l~G~~GsGKST~~~~L~~~   28 (179)
T 2pez_A            6 CTVWLTGLSGAGKTTVSMALEEY   28 (179)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            36889999999999999999764

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=83.96  E-value=0.52  Score=44.81  Aligned_cols=22  Identities=18%  Similarity=0.243  Sum_probs=19.8

Q ss_pred             EEEeeCCCCCChhHHHHHHhCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~   94 (736)
                      +|+|.|+.+|||||+.+.|...
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~~   23 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYEY   23 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999999753

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=83.89  E-value=0.44  Score=47.15  Aligned_cols=22  Identities=27%  Similarity=0.383  Sum_probs=20.4

Q ss_pred             EEEeeCCCCCChhHHHHHHhCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~   94 (736)
                      ++.|+|+.++|||+|+..|++.
T Consensus        26 ~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           26 ITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHH
Confidence            7899999999999999999873

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=83.87  E-value=0.54  Score=45.39  Aligned_cols=22  Identities=23%  Similarity=0.421  Sum_probs=20.0

Q ss_pred             EEEeeCCCCCChhHHHHHHhCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~   94 (736)
                      +|+|.|+++||||++.+.|.+.
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~   25 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAA   25 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            7999999999999999998653

>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*

Probab=83.76  E-value=8.2  Score=31.56  Aligned_cols=35  Identities=14%  Similarity=0.260  Sum_probs=24.2

Q ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698          568 NLQGENISLREKSSSLSKTVDSLKNEISDWKRKYD  602 (736)
Q Consensus       568 ~Le~k~~sl~~r~~~L~~~le~lk~e~~e~~~~ye  602 (736)
                      ++..|+..+..........+...+.|+.++++.++
T Consensus        32 ~y~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq   66 (77)
T 3trt_A           32 WYKSKFADLSEAANRNNDALRQAKQESTEYRRQVQ   66 (77)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            56666667777777777777777777777776654

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=83.72  E-value=0.52  Score=44.71  Aligned_cols=21  Identities=29%  Similarity=0.339  Sum_probs=19.1

Q ss_pred             EEEeeCCCCCChhHHHHHHhC
Q 004698           73 VVSVCGRARQGKSFILNQLLG   93 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~   93 (736)
                      +.+|+|+.++|||+|+..|.+
T Consensus        28 ~~~i~G~NGsGKStll~ai~~   48 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILF   48 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            788999999999999999864

>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1

Probab=83.60  E-value=18  Score=30.16  Aligned_cols=30  Identities=20%  Similarity=0.500  Sum_probs=15.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698          577 REKSSSLSKTVDSLKNEISDWKRKYDQVLT  606 (736)
Q Consensus       577 ~~r~~~L~~~le~lk~e~~e~~~~yee~~~  606 (736)
                      ...+..|+.++..++.+.+...+.|++.++
T Consensus        32 q~~i~~lE~eL~~~r~e~~~q~~EYq~Lln   61 (84)
T 1gk4_A           32 QDTIGRLQDEIQNMKEEMARHLREYQDLLN   61 (84)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444555555555555555555554

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=83.56  E-value=0.57  Score=45.24  Aligned_cols=23  Identities=22%  Similarity=0.123  Sum_probs=20.4

Q ss_pred             EEEEeeCCCCCChhHHHHHHhCC
Q 004698           72 GVVSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~~~   94 (736)
                      .+|.|.|+.+|||||+.+.|...
T Consensus         5 ~~I~i~G~~GsGKsT~~~~L~~~   27 (213)
T 2plr_A            5 VLIAFEGIDGSGKSSQATLLKDW   27 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Confidence            37999999999999999999753

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=83.52  E-value=0.52  Score=44.88  Aligned_cols=23  Identities=22%  Similarity=0.355  Sum_probs=20.1

Q ss_pred             EEEEeeCCCCCChhHHHHHHhCC
Q 004698           72 GVVSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~~~   94 (736)
                      .+|.|+|+.++||||+.+.|...
T Consensus         6 ~~I~l~G~~GsGKST~~~~L~~~   28 (193)
T 2rhm_A            6 ALIIVTGHPATGKTTLSQALATG   28 (193)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            47899999999999999998643

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=83.36  E-value=0.18  Score=54.80  Aligned_cols=20  Identities=30%  Similarity=0.461  Sum_probs=18.3

Q ss_pred             EEEeeCCCCCChhHHHHHHh
Q 004698           73 VVSVCGRARQGKSFILNQLL   92 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~   92 (736)
                      +++|+|+.|+|||+||+.|.
T Consensus        62 ~~~lvG~NGaGKStLl~aI~   81 (415)
T 4aby_A           62 FCAFTGETGAGKSIIVDALG   81 (415)
T ss_dssp             EEEEEESHHHHHHHHTHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHH
Confidence            78999999999999998764

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=83.34  E-value=0.54  Score=45.00  Aligned_cols=22  Identities=18%  Similarity=0.383  Sum_probs=19.9

Q ss_pred             EEEeeCCCCCChhHHHHHHhCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~   94 (736)
                      +|.|+|+.+|||||+.+.|...
T Consensus        14 ~I~l~G~~GsGKsT~a~~L~~~   35 (199)
T 2bwj_A           14 IIFIIGGPGSGKGTQCEKLVEK   35 (199)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6999999999999999998754

>2l7b_A Apolipoprotein E, APO-E; lipid transport, atherosclerosis, alzheime disease; NMR {Homo sapiens}

Probab=83.00  E-value=1.1  Score=46.98  Aligned_cols=15  Identities=0%  Similarity=-0.181  Sum_probs=7.7

Q ss_pred             chhHHHHHHHHHHHH
Q 004698          458 SIDNVVKVLDGLISE  472 (736)
Q Consensus       458 ~~~~~~~~~~~ll~~  472 (736)
                      ..+.+...|..++..
T Consensus        33 ~~e~v~~~fwdY~~~   47 (307)
T 2l7b_A           33 RWELALGRFWDYLRW   47 (307)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHH
Confidence            345555555555554

>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}

Probab=82.99  E-value=26  Score=31.48  Aligned_cols=96  Identities=14%  Similarity=0.188  Sum_probs=62.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 004698          500 DLVKRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREK  579 (736)
Q Consensus       500 ~~~~~l~~~i~~e~~~L~~k~es~e~e~~~lk~~Le~~e~~~~e~~k~~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r  579 (736)
                      ++-++-... ++++..||+...+++...+.....|...-..+..+  +  -+|    +++..+++....--.=++++++.
T Consensus        50 QlqKRn~~H-QKEi~~Lrae~~~~QRn~~K~~~~Lkrn~~qQnQQ--S--lDi----RKLrELEADLKEKDsMVe~LT~T  120 (167)
T 4gkw_A           50 QLQKRNVAH-QKEIGKLRAELGTAQRNLEKADQLLKRNSQQQNQQ--S--LDM----RKLGELEADLKEKDSMVESLTET  120 (167)
T ss_dssp             HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H--HHH----HHTHHHHHTHHHHHHHHHHHHHH
T ss_pred             HHHHhccHH-HHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHhHh--h--hhH----HHHHHHHhHHhhhhHHHHHHHHH
Confidence            344555544 88899999888888888887777775532221111  1  112    22344444444445557788889


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698          580 SSSLSKTVDSLKNEISDWKRKYDQV  604 (736)
Q Consensus       580 ~~~L~~~le~lk~e~~e~~~~yee~  604 (736)
                      +..|++.|+..+-+..++--.|+..
T Consensus       121 iG~LrKELEdEklK~~E~MdSFE~L  145 (167)
T 4gkw_A          121 IGILRKELENEKLKAAENMDSFEKL  145 (167)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999988888888877777653

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=82.98  E-value=0.65  Score=45.28  Aligned_cols=26  Identities=27%  Similarity=0.339  Sum_probs=22.3

Q ss_pred             CCEEEEEeeCCCCCChhHHHHHHhCC
Q 004698           69 EPIGVVSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        69 ~~v~vVsv~G~~rtGKS~LlN~l~~~   94 (736)
                      ..-.+|+|+|..+|||||+.+.|...
T Consensus        10 ~~~~iIgltG~~GSGKSTva~~L~~~   35 (192)
T 2grj_A           10 HHHMVIGVTGKIGTGKSTVCEILKNK   35 (192)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHHh
Confidence            34568999999999999999998753

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=82.97  E-value=0.45  Score=50.98  Aligned_cols=36  Identities=17%  Similarity=0.215  Sum_probs=27.3

Q ss_pred             HHHHHHhhccC-CCEEEEEeeCCCCCChhHHHHHHhCCC
Q 004698           58 PEAVAALQLVK-EPIGVVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        58 ~eAl~~L~~i~-~~v~vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      ..|++-+..+. +-  +++|+|+.++|||+||+.|.|..
T Consensus        59 ~~ald~ll~i~~Gq--~~gIiG~nGaGKTTLl~~I~g~~   95 (347)
T 2obl_A           59 VRAIDGLLTCGIGQ--RIGIFAGSGVGKSTLLGMICNGA   95 (347)
T ss_dssp             CHHHHHHSCEETTC--EEEEEECTTSSHHHHHHHHHHHS
T ss_pred             CEEEEeeeeecCCC--EEEEECCCCCCHHHHHHHHhcCC
Confidence            45666663332 22  68999999999999999999864

>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}

Probab=82.97  E-value=8  Score=32.08  Aligned_cols=27  Identities=19%  Similarity=0.153  Sum_probs=12.2

Q ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 004698          620 EVLKSRSTAAEARLAAAREQALSAQEE  646 (736)
Q Consensus       620 ~~L~~k~~~~E~~~~~~~~q~~~~~~E  646 (736)
                      +++..|+.++|.++..++++++.++..
T Consensus         9 e~~~~klq~~E~rN~~Le~~v~~le~~   35 (79)
T 3cvf_A            9 EETQQKVQDLETRNAELEHQLRAMERS   35 (79)
T ss_dssp             -CTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            344445555555554444444444444

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=82.91  E-value=0.58  Score=44.68  Aligned_cols=23  Identities=17%  Similarity=0.372  Sum_probs=20.1

Q ss_pred             EEEEeeCCCCCChhHHHHHHhCC
Q 004698           72 GVVSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~~~   94 (736)
                      .+|.|+|+.+|||||+.+.|...
T Consensus        10 ~~I~l~G~~GsGKsT~~~~La~~   32 (196)
T 2c95_A           10 NIIFVVGGPGSGKGTQCEKIVQK   32 (196)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            36899999999999999998743

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=82.69  E-value=0.74  Score=44.42  Aligned_cols=24  Identities=25%  Similarity=0.351  Sum_probs=21.0

Q ss_pred             EEEEEeeCCCCCChhHHHHHHhCC
Q 004698           71 IGVVSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        71 v~vVsv~G~~rtGKS~LlN~l~~~   94 (736)
                      ..+|.|+|+.+|||||+.+.|...
T Consensus        15 ~~~I~l~G~~GsGKsT~~~~L~~~   38 (203)
T 1ukz_A           15 VSVIFVLGGPGAGKGTQCEKLVKD   38 (203)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            357999999999999999999754

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=82.65  E-value=0.61  Score=47.09  Aligned_cols=25  Identities=20%  Similarity=0.264  Sum_probs=21.4

Q ss_pred             CEEEEEeeCCCCCChhHHHHHHhCC
Q 004698           70 PIGVVSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        70 ~v~vVsv~G~~rtGKS~LlN~l~~~   94 (736)
                      ...+|+|+|+.+|||||+.+.|...
T Consensus        21 ~~~iI~I~G~~GSGKST~a~~L~~~   45 (252)
T 1uj2_A           21 EPFLIGVSGGTASGKSSVCAKIVQL   45 (252)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHH
Confidence            3457999999999999999998753

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=82.59  E-value=0.48  Score=48.65  Aligned_cols=21  Identities=29%  Similarity=0.319  Sum_probs=19.7

Q ss_pred             EEEeeCCCCCChhHHHHHHhC
Q 004698           73 VVSVCGRARQGKSFILNQLLG   93 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~   93 (736)
                      ++.|+|+.++|||+|+..|++
T Consensus        32 i~~i~G~~GsGKTtl~~~l~~   52 (279)
T 1nlf_A           32 VGALVSPGGAGKSMLALQLAA   52 (279)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            688999999999999999986

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=82.49  E-value=0.56  Score=43.84  Aligned_cols=22  Identities=14%  Similarity=0.131  Sum_probs=19.5

Q ss_pred             EEEeeCCCCCChhHHHHHHhCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~   94 (736)
                      +|.|+|+.+|||||+.+.|...
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~~   25 (173)
T 1e6c_A            4 PIFMVGARGCGMTTVGRELARA   25 (173)
T ss_dssp             CEEEESCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999998643

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=82.37  E-value=0.62  Score=44.18  Aligned_cols=23  Identities=26%  Similarity=0.287  Sum_probs=20.3

Q ss_pred             EEEEeeCCCCCChhHHHHHHhCC
Q 004698           72 GVVSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~~~   94 (736)
                      .+|.|+|+.+|||||+.+.|...
T Consensus         7 ~~I~l~G~~GsGKsT~~~~L~~~   29 (194)
T 1qf9_A            7 NVVFVLGGPGSGKGTQCANIVRD   29 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999998643

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=82.34  E-value=0.5  Score=48.70  Aligned_cols=24  Identities=25%  Similarity=0.508  Sum_probs=21.0

Q ss_pred             CEEEEEeeCCCCCChhHHHHHHhCC
Q 004698           70 PIGVVSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        70 ~v~vVsv~G~~rtGKS~LlN~l~~~   94 (736)
                      |-+ |.++||.|+|||+|++.|.|.
T Consensus        44 ~~G-vlL~Gp~GtGKTtLakala~~   67 (274)
T 2x8a_A           44 PAG-VLLAGPPGCGKTLLAKAVANE   67 (274)
T ss_dssp             CSE-EEEESSTTSCHHHHHHHHHHH
T ss_pred             CCe-EEEECCCCCcHHHHHHHHHHH
Confidence            344 899999999999999999875

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=82.34  E-value=0.57  Score=44.20  Aligned_cols=22  Identities=23%  Similarity=0.209  Sum_probs=19.5

Q ss_pred             EEEeeCCCCCChhHHHHHHhCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~   94 (736)
                      +|.|+|+++|||||+...|...
T Consensus         6 ~i~i~G~~GsGKsTla~~La~~   27 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAKD   27 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            5889999999999999999754

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=82.30  E-value=0.6  Score=45.23  Aligned_cols=22  Identities=27%  Similarity=0.252  Sum_probs=19.9

Q ss_pred             EEEeeCCCCCChhHHHHHHhCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~   94 (736)
                      +|.|+|+.+|||||+.+.|...
T Consensus        12 ~I~l~G~~GsGKST~~~~L~~~   33 (212)
T 2wwf_A           12 FIVFEGLDRSGKSTQSKLLVEY   33 (212)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            6999999999999999999743

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=82.22  E-value=0.49  Score=52.34  Aligned_cols=37  Identities=22%  Similarity=0.202  Sum_probs=27.1

Q ss_pred             HHHHHHhhccCCCEEEEEeeCCCCCChhHHHHHHhCCC
Q 004698           58 PEAVAALQLVKEPIGVVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        58 ~eAl~~L~~i~~~v~vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      ..+++-+..+.. =-+++|+|+.++|||+||+.|.|..
T Consensus       145 ~~vld~vl~i~~-Gq~~~IvG~sGsGKSTLl~~Iag~~  181 (438)
T 2dpy_A          145 VRAINALLTVGR-GQRMGLFAGSGVGKSVLLGMMARYT  181 (438)
T ss_dssp             CHHHHHHSCCBT-TCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred             ceEEeeeEEecC-CCEEEEECCCCCCHHHHHHHHhccc
Confidence            346666633321 1268999999999999999999864

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=82.17  E-value=0.45  Score=57.64  Aligned_cols=23  Identities=35%  Similarity=0.494  Sum_probs=21.5

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      +|+|+|+.|+||||||+.|.|..
T Consensus       701 ivaIiGpNGSGKSTLLklLaGll  723 (986)
T 2iw3_A          701 RIAVIGPNGAGKSTLINVLTGEL  723 (986)
T ss_dssp             EEEECSCCCHHHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            79999999999999999999864

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=82.15  E-value=0.69  Score=46.71  Aligned_cols=21  Identities=43%  Similarity=0.422  Sum_probs=19.4

Q ss_pred             EEEeeCCCCCChhHHHHHHhC
Q 004698           73 VVSVCGRARQGKSFILNQLLG   93 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~   93 (736)
                      +|+|.|+.++||||+.+.|..
T Consensus        11 ~i~i~G~~GsGKsTla~~la~   31 (233)
T 3r20_A           11 VVAVDGPAGTGKSSVSRGLAR   31 (233)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999999874

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=82.09  E-value=0.87  Score=44.57  Aligned_cols=39  Identities=15%  Similarity=0.365  Sum_probs=28.4

Q ss_pred             eCHHHHHHhhcc--CCCEEEEEeeCCCCCChhHHHHHHhCC
Q 004698           56 MDPEAVAALQLV--KEPIGVVSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        56 l~~eAl~~L~~i--~~~v~vVsv~G~~rtGKS~LlN~l~~~   94 (736)
                      .+.++++.|...  ..+-..|-|.|+.|+|||+|+..+...
T Consensus        35 ~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~   75 (242)
T 3bos_A           35 GNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACAR   75 (242)
T ss_dssp             CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence            356777777643  223345778999999999999998753

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=82.07  E-value=0.53  Score=47.35  Aligned_cols=21  Identities=24%  Similarity=0.431  Sum_probs=19.5

Q ss_pred             EEeeCCCCCChhHHHHHHhCC
Q 004698           74 VSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~   94 (736)
                      |.++||.|+|||+|++.|.+.
T Consensus        52 ~ll~G~~G~GKTtl~~~i~~~   72 (254)
T 1ixz_A           52 VLLVGPPGVGKTHLARAVAGE   72 (254)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            889999999999999999875

>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*

Probab=82.04  E-value=38  Score=37.31  Aligned_cols=69  Identities=23%  Similarity=0.215  Sum_probs=30.5

Q ss_pred             HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 004698          519 KYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLAD-DYTSRINNLQGENISLREKSSSLSKTV  587 (736)
Q Consensus       519 k~es~e~e~~~lk~~Le~~e~~~~e~~k~~e~~In~lkk~~e-~~e~~~~~Le~k~~sl~~r~~~L~~~l  587 (736)
                      .+..+....+..+.++.+.+..+.++...++.....++..++ .+.+.+..|+..++++..+++.|+..+
T Consensus       122 ~i~~Iq~slk~~Q~Qi~en~n~~~~~~~~~e~~~~~i~~~~~~~~~~~i~~L~~~~~~l~~ki~~l~~~~  191 (464)
T 1m1j_B          122 YVNMIDNKLVKTQKQRKDNDIILSEYNTEMELHYNYIKDNLDNNIPSSLRVLRAVIDSLHKKIQKLENAI  191 (464)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444445555444444444433332 233444444444444444444444443

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=81.73  E-value=0.53  Score=51.41  Aligned_cols=23  Identities=30%  Similarity=0.393  Sum_probs=20.5

Q ss_pred             EEEEeeCCCCCChhHHHHHHhCC
Q 004698           72 GVVSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~~~   94 (736)
                      .+|.|+||.++|||+|...|+..
T Consensus         3 ~~i~i~GptgsGKttla~~La~~   25 (409)
T 3eph_A            3 KVIVIAGTTGVGKSQLSIQLAQK   25 (409)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHHH
T ss_pred             cEEEEECcchhhHHHHHHHHHHH
Confidence            47899999999999999999754

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=81.73  E-value=0.75  Score=43.84  Aligned_cols=25  Identities=28%  Similarity=0.184  Sum_probs=21.4

Q ss_pred             CEEEEEeeCCCCCChhHHHHHHhCC
Q 004698           70 PIGVVSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        70 ~v~vVsv~G~~rtGKS~LlN~l~~~   94 (736)
                      +-.+|.++|+.++||||+++.|.+.
T Consensus        12 ~~~~i~l~G~~GsGKsT~~~~L~~~   36 (186)
T 2yvu_A           12 KGIVVWLTGLPGSGKTTIATRLADL   36 (186)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence            3457899999999999999998754

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=81.65  E-value=0.76  Score=42.76  Aligned_cols=21  Identities=24%  Similarity=0.150  Sum_probs=19.1

Q ss_pred             EEEeeCCCCCChhHHHHHHhC
Q 004698           73 VVSVCGRARQGKSFILNQLLG   93 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~   93 (736)
                      +|.|.|+.+|||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSR   22 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999864

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=81.50  E-value=0.68  Score=44.88  Aligned_cols=22  Identities=27%  Similarity=0.357  Sum_probs=19.9

Q ss_pred             EEEeeCCCCCChhHHHHHHhCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~   94 (736)
                      +|.|+|+.+|||||+.+.|...
T Consensus        11 ~I~l~G~~GsGKsT~~~~L~~~   32 (215)
T 1nn5_A           11 LIVLEGVDRAGKSTQSRKLVEA   32 (215)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6999999999999999999753

>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}

Probab=81.44  E-value=17  Score=33.86  Aligned_cols=46  Identities=7%  Similarity=-0.015  Sum_probs=18.5

Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698          614 QVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVR  659 (736)
Q Consensus       614 ~~~~~i~~L~~k~~~~E~~~~~~~~q~~~~~~E~~e~~~ky~~~~~  659 (736)
                      .++++++.|+.++..+++.+..-.+..+..+.|..-++--++.+..
T Consensus        72 ~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~  117 (152)
T 3a7p_A           72 ILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQ  117 (152)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444433333344444443333333333333

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=81.41  E-value=0.15  Score=51.46  Aligned_cols=23  Identities=22%  Similarity=0.293  Sum_probs=20.1

Q ss_pred             EEEEeeCCCCCChhHHHHHHhCC
Q 004698           72 GVVSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~~~   94 (736)
                      .+++|+||.++|||+||+.|.|-
T Consensus        28 ~~~~i~GpnGsGKSTll~~i~g~   50 (227)
T 1qhl_A           28 LVTTLSGGNGAGKSTTMAAFVTA   50 (227)
T ss_dssp             HHHHHHSCCSHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhcc
Confidence            36789999999999999998763

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=81.28  E-value=0.76  Score=44.81  Aligned_cols=22  Identities=18%  Similarity=0.309  Sum_probs=19.1

Q ss_pred             EEEeeCCCCCChhHHHHHHhCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~   94 (736)
                      .|.|+|+.+|||||+.+.|...
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~   23 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIEK   23 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999999643

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=81.19  E-value=0.79  Score=43.44  Aligned_cols=22  Identities=23%  Similarity=0.191  Sum_probs=19.3

Q ss_pred             EEEeeCCCCCChhHHHHHHhCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~   94 (736)
                      +|.++|+.++||||+...|...
T Consensus         7 ~i~l~G~~GsGKst~a~~La~~   28 (185)
T 3trf_A            7 NIYLIGLMGAGKTSVGSQLAKL   28 (185)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5779999999999999999643

>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}

Probab=81.00  E-value=12  Score=30.92  Aligned_cols=37  Identities=16%  Similarity=0.159  Sum_probs=33.2

Q ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 004698          611 MEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEV  647 (736)
Q Consensus       611 ~~~~~~~~i~~L~~k~~~~E~~~~~~~~q~~~~~~E~  647 (736)
                      .++.+-++|.+|+-|+..+|..-...++.+.+++.|+
T Consensus        20 ~~E~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El   56 (81)
T 3qh9_A           20 KAEELLQELRHLKIKVEELENERNQYEWKLKATKAEV   56 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence            3567889999999999999999999999999999886

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=80.90  E-value=0.86  Score=55.24  Aligned_cols=21  Identities=24%  Similarity=0.499  Sum_probs=19.8

Q ss_pred             EEEeeCCCCCChhHHHHHHhC
Q 004698           73 VVSVCGRARQGKSFILNQLLG   93 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~   93 (736)
                      +++|+|+.|+||||||+.|.|
T Consensus       463 ~v~LiGpNGsGKSTLLk~Lag  483 (986)
T 2iw3_A          463 RYGICGPNGCGKSTLMRAIAN  483 (986)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            689999999999999999994

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=80.74  E-value=0.83  Score=43.64  Aligned_cols=22  Identities=14%  Similarity=0.294  Sum_probs=20.1

Q ss_pred             EEEeeCCCCCChhHHHHHHhCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~   94 (736)
                      +|.|+|+.+|||||+.+.|...
T Consensus        12 ~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A           12 NILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            6899999999999999999765

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=80.68  E-value=0.54  Score=49.73  Aligned_cols=26  Identities=19%  Similarity=0.285  Sum_probs=22.4

Q ss_pred             CCEEEEEeeCCCCCChhHHHHHHhCC
Q 004698           69 EPIGVVSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        69 ~~v~vVsv~G~~rtGKS~LlN~l~~~   94 (736)
                      .+...+.++||.|+|||+|++.|.|.
T Consensus        49 ~~~~~~ll~Gp~G~GKTTLa~~ia~~   74 (334)
T 1in4_A           49 EVLDHVLLAGPPGLGKTTLAHIIASE   74 (334)
T ss_dssp             CCCCCEEEESSTTSSHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence            45566889999999999999999864

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=80.65  E-value=0.96  Score=42.03  Aligned_cols=21  Identities=33%  Similarity=0.623  Sum_probs=18.7

Q ss_pred             EEEEeeCCCCCChhHHHHHHh
Q 004698           72 GVVSVCGRARQGKSFILNQLL   92 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~   92 (736)
                      .+..|+|+.++|||+||..|.
T Consensus        24 g~~~I~G~NGsGKStil~Ai~   44 (149)
T 1f2t_A           24 GINLIIGQNGSGKSSLLDAIL   44 (149)
T ss_dssp             EEEEEECCTTSSHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHH
Confidence            467899999999999999974

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=80.57  E-value=0.87  Score=42.52  Aligned_cols=25  Identities=20%  Similarity=0.130  Sum_probs=20.5

Q ss_pred             CEEEEEeeCCCCCChhHHHHHHhCC
Q 004698           70 PIGVVSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        70 ~v~vVsv~G~~rtGKS~LlN~l~~~   94 (736)
                      .+-+|.|.|..+|||||+...|...
T Consensus         6 ~~~~i~l~G~~GsGKSTva~~La~~   30 (168)
T 1zuh_A            6 HMQHLVLIGFMGSGKSSLAQELGLA   30 (168)
T ss_dssp             --CEEEEESCTTSSHHHHHHHHHHH
T ss_pred             ccceEEEECCCCCCHHHHHHHHHHH
Confidence            4568999999999999999998643

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=80.54  E-value=0.71  Score=43.67  Aligned_cols=21  Identities=19%  Similarity=0.279  Sum_probs=18.8

Q ss_pred             EEEeeCCCCCChhHHHHHHhC
Q 004698           73 VVSVCGRARQGKSFILNQLLG   93 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~   93 (736)
                      +|.|+|+.++||||+.+.|..
T Consensus        13 ~i~i~G~~GsGKst~~~~l~~   33 (180)
T 3iij_A           13 NILLTGTPGVGKTTLGKELAS   33 (180)
T ss_dssp             CEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEeCCCCCHHHHHHHHHH
Confidence            577999999999999999873

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=80.45  E-value=0.57  Score=48.76  Aligned_cols=22  Identities=23%  Similarity=0.333  Sum_probs=16.9

Q ss_pred             EEEEeeCCCCCChhHHHHHHhC
Q 004698           72 GVVSVCGRARQGKSFILNQLLG   93 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~~   93 (736)
                      .||+|.|+.+|||||+.+.|..
T Consensus         6 ~iIgItG~sGSGKSTva~~L~~   27 (290)
T 1a7j_A            6 PIISVTGSSGAGTSTVKHTFDQ   27 (290)
T ss_dssp             CEEEEESCC---CCTHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999999874

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=80.41  E-value=0.67  Score=43.97  Aligned_cols=22  Identities=27%  Similarity=0.235  Sum_probs=19.3

Q ss_pred             EEEeeCCCCCChhHHHHHHhCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~   94 (736)
                      +|.|+|+++|||||+...|...
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~~   25 (184)
T 2iyv_A            4 KAVLVGLPGSGKSTIGRRLAKA   25 (184)
T ss_dssp             SEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4889999999999999998643

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=80.31  E-value=0.88  Score=46.97  Aligned_cols=22  Identities=27%  Similarity=0.386  Sum_probs=20.5

Q ss_pred             EEEEEeeCCCCCChhHHHHHHh
Q 004698           71 IGVVSVCGRARQGKSFILNQLL   92 (736)
Q Consensus        71 v~vVsv~G~~rtGKS~LlN~l~   92 (736)
                      ..+|+|+|+.+|||||+.+.|.
T Consensus        75 ~~iI~I~G~~GSGKSTva~~La   96 (281)
T 2f6r_A           75 LYVLGLTGISGSGKSSVAQRLK   96 (281)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHH
Confidence            4689999999999999999997

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	736
d1f5na2	277	c.37.1.8 (A:7-283) Interferon-induced guanylate-bi	1e-78
d1f5na1	300	a.114.1.1 (A:284-583) Interferon-induced guanylate	1e-22
d1f5na1	300	a.114.1.1 (A:284-583) Interferon-induced guanylate	0.001

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 277

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  251 bits (642), Expect = 1e-78
 Identities = 94/279 (33%), Positives = 156/279 (55%), Gaps = 12/279 (4%)

Query: 42  PIRLVYCDEKGKFRMDPEAVAALQLVKEPIGVVSVCGRARQGKSFILNQLLGRSSGFQVA 101
           P+ L+  +  G+   +PEA+  L  + +P+ VV++ G  R GKS+++N+L G+  GF + 
Sbjct: 4   PMCLIE-NTNGRLMANPEALKILSAITQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLG 62

Query: 102 STHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYDQ-TGTYSTQIFSLAVLLSS 160
           ST +  TKG+W+W  P          + L+LLD+EG+   ++      + IF+LAVLLSS
Sbjct: 63  STVQSHTKGIWMWCVPHP----KKPGHILVLLDTEGLGDVEKGDNQNDSWIFALAVLLSS 118

Query: 161 MFIYNQMGGIDESAIDRLSLVTQMTKHIRIRAS-----GGKTTPSELGQFSPIFVWLLRD 215
            F+YN +G I++ A+D+L  VT++T  IR ++S           ++   F P FVW LRD
Sbjct: 119 TFVYNSIGTINQQAMDQLYYVTELTHRIRSKSSPDENENEVEDSADFVSFFPDFVWTLRD 178

Query: 216 FYLDLVEDNRKITPRDYLEIALRPVQGSGRDIAAKNEIRDSIRALFPDRECFTLVRPLSN 275
           F LDL  D + +TP +YL  +L+  +G+ +     N  R  IR  FP ++CF   RP+  
Sbjct: 179 FSLDLEADGQPLTPDEYLTYSLKLKKGTSQKDETFNLPRLCIRKFFPKKKCFVFDRPVHR 238

Query: 276 ENELQRLDQISLDRLRPEFRAGLDALTKFVFERTRPKQV 314
              L +L+++  + L PEF   +     ++F  ++ K +
Sbjct: 239 RK-LAQLEKLQDEELDPEFVQQVADFCSYIFSNSKTKTL 276

>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300

class: All alpha proteins
fold: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
superfamily: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
family: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
domain: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.1 bits (241), Expect = 1e-22
 Identities = 58/303 (19%), Positives = 119/303 (39%), Gaps = 21/303 (6%)

Query: 315 GATVLTGPVLIGITESYLDAINNGAVPTISSSWQSVEEAECRRAYDSATETYMSTFDR-- 372
           G   + GP L  +  +Y++AI++G +P + ++  ++ + E   A   A   Y     +  
Sbjct: 1   GGIQVNGPRLESLVLTYVNAISSGDLPCMENAVLALAQIENSAAVQKAIAHYEQQMGQKV 60

Query: 373 SKPPEEVA-LGEAHEAAVQKALAVYNAGAVGVGLARKKYEGLLQKFFRKAFEDHKKNVYM 431
             P E +  L + H  + ++A+ V+             ++  L     K  +D  K    
Sbjct: 61  QLPTESLQELLDLHRDSEREAIEVFI--RSSFKDVDHLFQKELAAQLEKKRDDFCKQNQE 118

Query: 432 EADIRCSSAIQ----SMERKLRAACHSSDASIDNVVKVLDGLISEYETSCHGPGKWQKLA 487
            +  RCS  +Q     +E +++A  +S        V+ L  L  +Y        + +++ 
Sbjct: 119 ASSDRCSGLLQVIFSPLEEEVKAGIYSKPGGYRLFVQKLQDLKKKYYEEPRKGIQAEEIL 178

Query: 488 TFLQQSSEGPILDL------VKRLIDQIGSERS---SLMLKYRSIEDNMKLLKKQLEDSE 538
               +S E     +      +     +I  ER    S     + + +  +  ++ +E  E
Sbjct: 179 QTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKE 238

Query: 539 RYKSEYLKRYDDAI-NDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDW 597
           R   E+LK+  + + ND+ +L  +    +     E   L ++     K    +KNEI D 
Sbjct: 239 RSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKE--GFQKESRIMKNEIQDL 296

Query: 598 KRK 600
           + K
Sbjct: 297 QTK 299

>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300

class: All alpha proteins
fold: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
superfamily: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
family: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
domain: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (90), Expect = 0.001
 Identities = 34/231 (14%), Positives = 81/231 (35%), Gaps = 16/231 (6%)

Query: 484 QKLATFLQQSSEGPILDLVKRLIDQIGSERSSLML--KYRSIEDNMKLLKKQLEDSERYK 541
           + +  F++ S +       K L  Q+  +R       +  S +    LL+      E   
Sbjct: 80  EAIEVFIRSSFKDVDHLFQKELAAQLEKKRDDFCKQNQEASSDRCSGLLQVIFSPLEEEV 139

Query: 542 SE----YLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDW 597
                     Y   +   + L   Y         + I   E   +  K+ +S+ + I   
Sbjct: 140 KAGIYSKPGGYRLFVQKLQDLKKKY----YEEPRKGIQAEEILQTYLKSKESMTDAI--- 192

Query: 598 KRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVA 657
             + DQ LT+++   +    + E  ++ +           +     +   +E  ++    
Sbjct: 193 -LQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEK 251

Query: 658 VREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKI 708
           +   +  L K    +   + ++Q++E +L+E F       + E+++  TK+
Sbjct: 252 MENDRVQLLKEQ--ERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQTKM 300

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	736
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	100.0
d1f5na1	300	Interferon-induced guanylate-binding protein 1 (GB	99.96
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	98.03
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	97.87
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	97.85
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	97.62
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	97.48
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	97.4
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	97.39
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	97.34
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	97.24
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	97.24
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	97.24
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	97.24
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	97.23
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	97.2
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	97.16
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	97.1
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	96.96
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	96.95
d2fh5b1	207	Signal recognition particle receptor beta-subunit	96.68
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	96.54
d1nrjb_	209	Signal recognition particle receptor beta-subunit	96.49
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	96.45
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	96.45
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	96.42
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	96.41
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	96.38
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	96.36
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	96.23
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	96.18
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	96.18
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	96.13
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	96.12
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	96.12
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	96.08
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	96.05
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.0
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	95.99
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	95.99
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	95.94
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	95.92
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	95.89
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	95.88
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	95.78
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	95.77
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	95.72
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	95.71
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	95.68
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	95.67
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	95.65
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	95.65
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	95.57
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	95.51
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	95.5
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	95.49
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	95.38
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	95.37
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	95.35
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	95.33
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	95.3
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	95.25
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	95.19
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	95.16
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	95.07
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	95.07
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	95.05
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	94.99
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	94.78
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	94.77
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	94.74
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	94.73
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	94.68
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	94.57
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	94.56
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	94.55
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	94.48
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	94.41
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	94.29
d2awna2	232	Maltose transport protein MalK, N-terminal domain	94.05
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	93.96
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	93.95
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	93.93
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	93.77
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	93.7
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	93.69
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	93.46
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	93.42
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	93.35
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	93.34
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	93.33
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	93.28
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	93.27
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	93.25
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	93.11
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	93.05
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	93.04
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	93.02
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	93.0
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	92.95
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	92.68
d1g2912	240	Maltose transport protein MalK, N-terminal domain	92.67
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	92.64
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	92.6
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	92.6
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	92.57
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	92.47
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	92.43
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	92.42
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	92.32
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	92.31
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	92.26
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	92.01
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	91.72
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	91.53
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	91.47
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	91.38
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	91.15
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	91.07
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	90.75
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	90.42
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	90.07
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	89.71
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	89.51
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	89.36
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	89.35
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	89.34
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	88.94
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	88.9
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	88.66
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	88.4
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	88.31
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	88.28
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	88.17
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	88.16
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	87.14
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	86.72
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	86.39
d1j8yf2	211	GTPase domain of the signal sequence recognition p	86.12
d1ls1a2	207	GTPase domain of the signal sequence recognition p	85.97
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	85.96
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	85.92
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	85.83
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	85.81
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	85.72
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	85.56
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	85.39
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	85.13
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	84.76
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	84.73
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	84.65
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	84.54
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	84.34
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	84.05
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	83.77
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	83.25
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	82.95
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	82.6
d1fxka_	107	Prefoldin beta subunit {Archaeon Methanobacterium	82.54
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	82.5
d2efla1	288	Formin-binding protein 1, FNBP1 {Human (Homo sapie	82.42
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	82.2
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	81.99
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	81.62
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	81.46
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	81.29
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	81.1
d1fxka_	107	Prefoldin beta subunit {Archaeon Methanobacterium	81.04
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	80.95
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	80.17

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.6e-62  Score=511.09  Aligned_cols=270  Identities=35%  Similarity=0.678  Sum_probs=246.4

Q ss_pred             CCCeeEEEeCCCCceeeCHHHHHHhhccCCCEEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccc
Q 004698           40 ARPIRLVYCDEKGKFRMDPEAVAALQLVKEPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLK  119 (736)
Q Consensus        40 ~~pi~Lv~~d~~~~l~l~~eAl~~L~~i~~~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~  119 (736)
                      +.|||||+ +++|+|.++++|+++|+.+++||+||||+|++|||||||||+|+|...||.||+++++||+|||||+.|++
T Consensus         2 ~~p~~li~-~~~~~l~~~~e~l~~l~~~~~~v~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~~   80 (277)
T d1f5na2           2 TGPMCLIE-NTNGRLMANPEALKILSAITQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHP   80 (277)
T ss_dssp             CSCEEEEE-EETTEEEECHHHHHHHHTCCSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECS
T ss_pred             CCCeEEEE-cCCCeEEECHHHHHHHHcCCCCEEEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeecc
Confidence            57999997 56799999999999999999999999999999999999999999999999999999999999999999985


Q ss_pred             cccCCCCceEEEEeecCCCcccCC-CCccchHHHHHhhhccceEEEccCCCCchHHhhhhHHHHHHHHHHHHHhcC----
Q 004698          120 RTALDGTEYNLLLLDSEGIDAYDQ-TGTYSTQIFSLAVLLSSMFIYNQMGGIDESAIDRLSLVTQMTKHIRIRASG----  194 (736)
Q Consensus       120 ~~~~~g~~~~v~llDteG~~~~~~-~~~~d~~IFaLa~LLSS~~IyN~~g~i~e~~l~~L~~v~el~~~i~~k~~~----  194 (736)
                          +|.++.|++|||||+++.+. +..+|.+||+|++||||++|||+++.|++.++++|++++++++.+.++.+.    
T Consensus        81 ----~~~~~~~~~lDteG~~~~~~~~~~~~~~i~~l~~llSs~~i~N~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~  156 (277)
T d1f5na2          81 ----KKPGHILVLLDTEGLGDVEKGDNQNDSWIFALAVLLSSTFVYNSIGTINQQAMDQLYYVTELTHRIRSKSSPDENE  156 (277)
T ss_dssp             ----SSTTCEEEEEEECCBCCGGGCCCTTHHHHHHHHHHHCSEEEEEEESCSSHHHHHTTHHHHTHHHHCBSCCC-----
T ss_pred             ----CCCCceEEEEecccccccccccchhHHHHHHHHHHHhCEEEEeccccCcHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence                46778999999999998775 456899999999999999999999999999999999999999988766531    


Q ss_pred             -CCCCCCcccccCCeEEEEeecccccccccCccCChHHHHHHhhccccCCChhhhhhhHHHHHHHhhCCCCceEeccCCC
Q 004698          195 -GKTTPSELGQFSPIFVWLLRDFYLDLVEDNRKITPRDYLEIALRPVQGSGRDIAAKNEIRDSIRALFPDRECFTLVRPL  273 (736)
Q Consensus       195 -~~~~~~e~~~~~P~f~wlvRDf~l~~~~~g~~~t~~~yLe~~L~~~~g~~~~~~~~n~ir~~i~~~F~~~~cf~l~~P~  273 (736)
                       +.....++..++|.|+|+||||++++..+|..+|+.+||+++|+..++.+.++...|.+|++|++||++++||+||||+
T Consensus       157 ~~~~~~~~~~~~~p~l~~vvRD~~~~~~~~~~~~t~~eyLe~~l~~~~~~~~~~~~~N~~R~~i~~~F~dv~cf~Lp~P~  236 (277)
T d1f5na2         157 NEVEDSADFVSFFPDFVWTLRDFSLDLEADGQPLTPDEYLTYSLKLKKGTSQKDETFNLPRLCIRKFFPKKKCFVFDRPV  236 (277)
T ss_dssp             --CCGGGGHHHHCCEEEEEEETCCCCCCCSSSCCCHHHHHHHHTCCCCCCSHHHHHHHHHHHHHHHHCSCEEEEECCCCS
T ss_pred             cccccchhhcccCCceEEEeecccccccccCCcccHHHHHHHHHhcccCchhhhHhhhhHHHHHHHhcCCCeEEeCCCCc
Confidence             1122345567899999999999998877889999999999999999998889999999999999999999999999998


Q ss_pred             cChhhhhcccCCCcCCCChHHHHHHHHHHHHHhccCCccccC
Q 004698          274 SNENELQRLDQISLDRLRPEFRAGLDALTKFVFERTRPKQVG  315 (736)
Q Consensus       274 ~~~~~l~~l~~~~~~~l~~eF~~~l~~l~~~i~~~~~pK~~~  315 (736)
                      ..+ .+++++.++.++|+|+|+++++.||++|+++++||+++
T Consensus       237 ~~~-~l~~l~~~~~~~L~~~F~~~v~~L~k~I~~~~~~K~ln  277 (277)
T d1f5na2         237 HRR-KLAQLEKLQDEELDPEFVQQVADFCSYIFSNSKTKTLS  277 (277)
T ss_dssp             CGG-GGGGGGGSCGGGSCHHHHHHHHHHHHHHHHHCCCCEET
T ss_pred             chh-hhchhhcCCccccCHHHHHHHHHHHHHHhccCCCcccC
Confidence            654 58899999999999999999999999999999999874

>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
superfamily: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
family: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
domain: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=4.9e-27  Score=246.34  Aligned_cols=242  Identities=20%  Similarity=0.279  Sum_probs=204.1

Q ss_pred             CCcccchhhHHHHHHHHHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHhhcccC--CCC-ChHHHHHHHHHHHHH
Q 004698          315 GATVLTGPVLIGITESYLDAINNGAVPTISSSWQSVEEAECRRAYDSATETYMSTFDRS--KPP-EEVALGEAHEAAVQK  391 (736)
Q Consensus       315 ~g~~ltg~~l~~l~~~yv~ain~g~vP~i~s~~~~~~e~~~~~a~~~A~~~Y~~~m~~~--~p~-~e~~L~~~h~~~~~~  391 (736)
                      ||.+|||++|+.|++.||+|||+|.||||.|+|.++++++|.+|++.|+..|...|+..  .|+ +.++|...|..+..+
T Consensus         1 gg~~~~g~~l~~l~~~yv~ain~g~~P~i~~~~~~~~~~e~~~a~e~a~~~Y~~~m~~~~~~~~~~~eel~~~h~~~~~~   80 (300)
T d1f5na1           1 GGIQVNGPRLESLVLTYVNAISSGDLPCMENAVLALAQIENSAAVQKAIAHYEQQMGQKVQLPTESLQELLDLHRDSERE   80 (300)
T ss_dssp             TTEECBHHHHHHHHHHHHHHHHHTSCCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSSCSSHHHHHHHHHHHHHH
T ss_pred             CCceeeHHHHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHH
Confidence            79999999999999999999999999999999999999999999999999999999753  355 458899999999999


Q ss_pred             HHHHhhhcccCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhhccCCCcchhHHHHHHH
Q 004698          392 ALAVYNAGAVGVGLARKKYEGLLQKFFRKAFEDHKKNVYMEADIRCSSAIQS----MERKLRAACHSSDASIDNVVKVLD  467 (736)
Q Consensus       392 Al~~F~~~s~g~~~~~~~~~~~L~~~i~~~~e~~~~~n~~~s~~~C~~~l~~----le~~l~~~~~~~~~~~~~~~~~~~  467 (736)
                      |+.+|...+||  +....|..+|...+.+.+.+|++.|...|...|..++..    ++.++.++.+..+++|..+...++
T Consensus        81 a~~~f~~~~~~--~~~~~~~~~L~~~l~~~~~~~~~~Ne~~s~~~c~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  158 (300)
T d1f5na1          81 AIEVFIRSSFK--DVDHLFQKELAAQLEKKRDDFCKQNQEASSDRCSGLLQVIFSPLEEEVKAGIYSKPGGYRLFVQKLQ  158 (300)
T ss_dssp             HHHHHHHHCCC--CGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSTTHHHHHHHHHH
T ss_pred             HHHHHHHhcch--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchHHHHHHHHH
Confidence            99999999998  445789999999999999999999999999999998865    777788888999999999999999


Q ss_pred             HHHHHHhccc-CCCchhHHHHHHHHH--hhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 004698          468 GLISEYETSC-HGPGKWQKLATFLQQ--SSEGPILDLVKRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEY  544 (736)
Q Consensus       468 ~ll~~Y~~~~-~Gp~K~~~L~~fLq~--~~~~~il~~~~~l~~~i~~e~~~L~~k~es~e~e~~~lk~~Le~~e~~~~e~  544 (736)
                      .+...|+..+ .++.....+..|++.  ...+.+.+.+..+... ...+...+.+.+........+...+...+..+.+.
T Consensus       159 ~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~e~~  237 (300)
T d1f5na1         159 DLKKKYYEEPRKGIQAEEILQTYLKSKESMTDAILQTDQTLTEK-EKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQK  237 (300)
T ss_dssp             HHHHHHHHSSCCCTTHHHHHHHHHHHTHHHHHHHHHHCSSSCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999987 445455667777763  3455666555444444 56667777788888888888888888888888888


Q ss_pred             HHHHHHHHHHHHHHH
Q 004698          545 LKRYDDAINDKKKLA  559 (736)
Q Consensus       545 ~k~~e~~In~lkk~~  559 (736)
                      .+.+++.+..++..+
T Consensus       238 ~~~~ee~~~~l~~~~  252 (300)
T d1f5na1         238 ERSYQEHLKQLTEKM  252 (300)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            888888777664433

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.03  E-value=9.8e-06  Score=81.41  Aligned_cols=109  Identities=15%  Similarity=0.148  Sum_probs=61.5

Q ss_pred             HHhhccC-CCEEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccc----eEEeeccccccccCCCCceEEEEeecC
Q 004698           62 AALQLVK-EPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTK----GLWLWSAPLKRTALDGTEYNLLLLDSE  136 (736)
Q Consensus        62 ~~L~~i~-~~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~----Giw~w~~p~~~~~~~g~~~~v~llDte  136 (736)
                      ..+...+ .++. |.++|.+++|||+|+|.|+|.. -|.+++ ..++|+    +.+.|         +|  ..+.|+|||
T Consensus        23 ~~l~~~~~~~l~-I~LvG~tg~GKSSliN~ilg~~-~~~vs~-~~~~T~~~~~~~~~~---------~g--~~i~viDTP   88 (257)
T d1h65a_          23 GNLKQEDVNSLT-ILVMGKGGVGKSSTVNSIIGER-VVSISP-FQSEGPRPVMVSRSR---------AG--FTLNIIDTP   88 (257)
T ss_dssp             HHHHHTTCCEEE-EEEEESTTSSHHHHHHHHHTSC-CSCCCS-SSCCCSSCEEEEEEE---------TT--EEEEEEECC
T ss_pred             HHHhhcCCCCcE-EEEECCCCCcHHHHHHHHhCCC-ceeecC-CCCcceeEEEEEEEe---------cc--EEEEEEeee
Confidence            3344333 5666 6699999999999999999975 355543 234554    33333         23  568999999


Q ss_pred             CCcccCCCCcc-chHHHHHh-hhccc--eEEEccC-CCCchHHhhhhHHHHHH
Q 004698          137 GIDAYDQTGTY-STQIFSLA-VLLSS--MFIYNQM-GGIDESAIDRLSLVTQM  184 (736)
Q Consensus       137 G~~~~~~~~~~-d~~IFaLa-~LLSS--~~IyN~~-g~i~e~~l~~L~~v~el  184 (736)
                      |+.+.+..... ...+.... .---.  +++.+.. ..+++.+...+..+.++
T Consensus        89 Gl~~~~~~~~~~~~~i~~~~~~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~  141 (257)
T d1h65a_          89 GLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDS  141 (257)
T ss_dssp             CSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHH
T ss_pred             cccCCcchHHHHHHHHHHHHhcCCCCeEEEEEECCCCCCCHHHHHHHHHHHHH
Confidence            99754432211 11222111 10111  2344442 35777777766655444

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.87  E-value=1.3e-05  Score=85.83  Aligned_cols=98  Identities=21%  Similarity=0.255  Sum_probs=60.0

Q ss_pred             CCEEEEEeeCCCCCChhHHHHHHhCCCC---cccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcccCCCC
Q 004698           69 EPIGVVSVCGRARQGKSFILNQLLGRSS---GFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYDQTG  145 (736)
Q Consensus        69 ~~v~vVsv~G~~rtGKS~LlN~l~~~~~---gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~~~~~  145 (736)
                      .|+. |+|+|.+++|||+|+|.|+|...   |. ...++.++|..+..|..|      ++.  .++|+||+|++..... 
T Consensus        55 ~~l~-Iai~G~~n~GKSSLiNaL~G~~~~~~~~-~~~g~~~tT~~~~~~~~~------~~~--~~~l~DtPG~~~~~~~-  123 (400)
T d1tq4a_          55 SVLN-VAVTGETGSGKSSFINTLRGIGNEEEGA-AKTGVVEVTMERHPYKHP------NIP--NVVFWDLPGIGSTNFP-  123 (400)
T ss_dssp             CCEE-EEEEECTTSSHHHHHHHHHTCCTTSTTS-CCCCC----CCCEEEECS------SCT--TEEEEECCCGGGSSCC-
T ss_pred             CCcE-EEEECCCCCCHHHHHHHHhCCCcCCCcc-CCCCCCCCceeeeeeecc------CCC--eEEEEeCCCccccccc-
Confidence            4665 89999999999999999999642   21 122345677766555433      222  3778999999754432 


Q ss_pred             ccchHHHHHhhhccceEEEccCCCCchHHhhhh
Q 004698          146 TYSTQIFSLAVLLSSMFIYNQMGGIDESAIDRL  178 (736)
Q Consensus       146 ~~d~~IFaLa~LLSS~~IyN~~g~i~e~~l~~L  178 (736)
                       .+..+--....-..++|+=+.+.+.+.+++-+
T Consensus       124 -~~~~~~~~~~~~~d~~l~~~~~~~~~~d~~l~  155 (400)
T d1tq4a_         124 -PDTYLEKMKFYEYDFFIIISATRFKKNDIDIA  155 (400)
T ss_dssp             -HHHHHHHTTGGGCSEEEEEESSCCCHHHHHHH
T ss_pred             -HHHHHHHhhhhcceEEEEecCCCCCHHHHHHH
Confidence             22222223333456777777788888776544

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.85  E-value=2.6e-05  Score=73.11  Aligned_cols=59  Identities=27%  Similarity=0.483  Sum_probs=40.7

Q ss_pred             EEEEEeeCCCCCChhHHHHHHhCCCCc-c-cccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698           71 IGVVSVCGRARQGKSFILNQLLGRSSG-F-QVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA  140 (736)
Q Consensus        71 v~vVsv~G~~rtGKS~LlN~l~~~~~g-F-~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~  140 (736)
                      .+.|+|+|..++|||+|+|+|+|.... + ...+++..+..+++.+.           +..+.++||+|+..
T Consensus         5 ~~~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~-----------~~~~~~~DtpG~~~   65 (178)
T d1wf3a1           5 SGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEG-----------RRQIVFVDTPGLHK   65 (178)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET-----------TEEEEEEECCCCCC
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCceeecccCCcccccccceeeee-----------eeeeeecccccccc
Confidence            458999999999999999999997521 1 11123334445555442           25788999999854

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.62  E-value=5.1e-05  Score=71.05  Aligned_cols=55  Identities=27%  Similarity=0.255  Sum_probs=38.4

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccC---CCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVAS---THRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA  140 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~---~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~  140 (736)
                      |+++|.+++|||+|+|.|.|..  ..+++   +....+.|+|.+..          ...+.++||+|+..
T Consensus         4 VaivG~~nvGKSTLin~L~~~~--~~~~~~~~~t~~~~~~~~~~~~----------~~~~~~~DtpG~~~   61 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAMTRAH--PKIAPYPFTTLSPNLGVVEVSE----------EERFTLADIPGIIE   61 (180)
T ss_dssp             EEEECCGGGCHHHHHHHHCSSC--CEECCCTTCSSCCEEEEEECSS----------SCEEEEEECCCCCC
T ss_pred             EEEECCCCCCHHHHHHHHhCCC--CceeccCCCceeeeeceeeecC----------CCeEEEcCCCeeec
Confidence            8999999999999999999875  23322   12234556665432          23578899999854

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.48  E-value=3.9e-05  Score=72.14  Aligned_cols=55  Identities=24%  Similarity=0.270  Sum_probs=37.5

Q ss_pred             EEEEeeCCCCCChhHHHHHHhCCCCccccc---CCCCCccceEEeeccccccccCCCCceEEEEeecCCC
Q 004698           72 GVVSVCGRARQGKSFILNQLLGRSSGFQVA---STHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI  138 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~---~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~  138 (736)
                      +=|+|+|++++|||+|+|.|+|...  .++   +++...+.|.+.+        ++|.  .+.++||+|+
T Consensus         2 ~~VaiiG~~nvGKSSLin~L~~~~~--~~~~~~~~T~~~~~~~~~~--------~~~~--~~~~~DtpG~   59 (185)
T d1lnza2           2 ADVGLVGFPSVGKSTLLSVVSSAKP--KIADYHFTTLVPNLGMVET--------DDGR--SFVMADLPGL   59 (185)
T ss_dssp             CCEEEESSTTSSHHHHHHHSEEECC--EESSTTSSCCCCCEEEEEC--------SSSC--EEEEEEHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHhCCCC--ceecCCCceEeeeeceeEe--------cCCc--EEEEecCCCc
Confidence            3489999999999999999998652  222   1222334555543        2332  4778999997

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.40  E-value=8.3e-05  Score=75.57  Aligned_cols=32  Identities=31%  Similarity=0.441  Sum_probs=24.9

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCcc
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCT  108 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T  108 (736)
                      |+|+|.+++|||+|+|.|+|.. -++++.+  +||
T Consensus        29 ivvvG~~SsGKSsliNaLlg~~-~lP~~~~--~~T   60 (299)
T d2akab1          29 IAVVGGQSAGKSSVLENFVGRD-FLPRGSG--IVT   60 (299)
T ss_dssp             EEEEEBTTSCHHHHHHHHHTSC-CSCCCSS--CSC
T ss_pred             EEEEcCCCCCHHHHHHHHhCCC-cCCCCCC--ccc
Confidence            7799999999999999999975 2255443  444

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.39  E-value=0.0001  Score=68.74  Aligned_cols=54  Identities=20%  Similarity=0.299  Sum_probs=36.4

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCccc
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAY  141 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~  141 (736)
                      |+++|++++|||+|+|.|+|..  +.+++.. .+|+.+-.+.         +.  .+.++||+|++..
T Consensus         3 I~lvG~~nvGKSsLin~l~~~~--~~~~~~~-g~T~~~~~~~---------~~--~~~ivDtpG~~~~   56 (184)
T d2cxxa1           3 IIFAGRSNVGKSTLIYRLTGKK--VRRGKRP-GVTRKIIEIE---------WK--NHKIIDMPGFGFM   56 (184)
T ss_dssp             EEEEEBTTSSHHHHHHHHHSCC--CSSSSST-TCTTSCEEEE---------ET--TEEEEECCCBSCC
T ss_pred             EEEECCCCCCHHHHHHHHhCCC--ceeeCCC-CEeecccccc---------cc--cceecccCCceec
Confidence            8999999999999999999976  4454321 2455432221         11  1456899998644

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=97.34  E-value=0.00019  Score=67.93  Aligned_cols=63  Identities=21%  Similarity=0.221  Sum_probs=35.2

Q ss_pred             CCEEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccc-eEEeeccccccccCCCCceEEEEeecCCCcccCC
Q 004698           69 EPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTK-GLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYDQ  143 (736)
Q Consensus        69 ~~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~-Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~~~  143 (736)
                      .++-.|+|+|.+++|||+|+|.|+|......+++. ..+|. .+..+..           ....++|+.|.+....
T Consensus        21 ~~~~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~-~~~t~~~~~~~~~-----------~~~~~~d~~~~~~~~~   84 (195)
T d1svia_          21 GGLPEIALAGRSNVGKSSFINSLINRKNLARTSSK-PGKTQTLNFYIIN-----------DELHFVDVPGYGFAKV   84 (195)
T ss_dssp             SCCCEEEEEEBTTSSHHHHHHHHHTC--------------CCEEEEEET-----------TTEEEEECCCBCCCSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHhcCCCceEEeecc-cceeeeccccccc-----------ccceEEEEEeeccccc
Confidence            45557999999999999999999987532233222 22333 3333321           1245688888765443

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=97.24  E-value=0.00033  Score=64.69  Aligned_cols=62  Identities=19%  Similarity=0.230  Sum_probs=34.9

Q ss_pred             EEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcccC
Q 004698           72 GVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYD  142 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~~  142 (736)
                      +.|+|+|+.++|||+|+|+|+|..  +...+....+|. .|++..-      +.....+.+.||.|+....
T Consensus         1 a~V~liG~~n~GKSsLi~~L~~~~--~~~~~~~~~~t~-~~~~~~~------~~~~~~~~~~d~~g~~~~~   62 (171)
T d1mkya1           1 ATVLIVGRPNVGKSTLFNKLVKKK--KAIVEDEEGVTR-DPVQDTV------EWYGKTFKLVDTCGVFDNP   62 (171)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHC-----------------CCSEEEE------EETTEEEEEEECTTTTSSG
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC--cceecccCceee-ccccccc------cccccccccccccceeeee
Confidence            469999999999999999999875  222121122222 2232210      1223578999999985433

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.24  E-value=6.2e-05  Score=76.95  Aligned_cols=33  Identities=30%  Similarity=0.454  Sum_probs=21.8

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccc
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTK  109 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~  109 (736)
                      |+|+|.+++|||+|+|.|+|.. -++++.+  +||.
T Consensus        27 ivVvG~~ssGKSSliNaLlG~~-~lP~~~~--~~T~   59 (306)
T d1jwyb_          27 IVVVGSQSSGKSSVLENIVGRD-FLPRGSG--IVTR   59 (306)
T ss_dssp             EEEEECSSSSHHHHHHHHHTSC-CCCC---------
T ss_pred             EEEEeCCCCCHHHHHHHHhCCC-CCCCCCC--cccc
Confidence            6789999999999999999975 2244433  5554

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=97.24  E-value=0.00012  Score=73.69  Aligned_cols=56  Identities=25%  Similarity=0.292  Sum_probs=34.6

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceE-EeeccccccccCCCCceEEEEeecCCCccc
Q 004698           73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGL-WLWSAPLKRTALDGTEYNLLLLDSEGIDAY  141 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Gi-w~w~~p~~~~~~~g~~~~v~llDteG~~~~  141 (736)
                      -|+|+|.+.+|||+|+|.|.|.. ...+|+... .|+++ |++..         .  .+.|+||||+.-+
T Consensus       114 ~v~vvG~PNvGKSsliN~L~~~~-~~~~~~~pG-~Tr~~~~i~~~---------~--~~~l~DTPGi~~p  170 (273)
T d1puja_         114 RALIIGIPNVGKSTLINRLAKKN-IAKTGDRPG-ITTSQQWVKVG---------K--ELELLDTPGILWP  170 (273)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSC-CC-------------CCEEET---------T--TEEEEECCCCCCS
T ss_pred             EEEEEecCccchhhhhhhhhccc-eEEECCccc-ccccceEEECC---------C--CeEEecCCCcccc
Confidence            49999999999999999999975 244544322 35543 55432         2  3789999998644

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.24  E-value=7.2e-05  Score=73.31  Aligned_cols=26  Identities=38%  Similarity=0.764  Sum_probs=22.7

Q ss_pred             cCCCEEEEEeeCCCCCChhHHHHHHhCC
Q 004698           67 VKEPIGVVSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        67 i~~~v~vVsv~G~~rtGKS~LlN~l~~~   94 (736)
                      +..||  |||+|...+|||+|+|.|++.
T Consensus         3 ~r~p~--IaIiGh~d~GKSTL~~~L~~~   28 (227)
T d1g7sa4           3 IRSPI--VSVLGHVDHGKTTLLDHIRGS   28 (227)
T ss_dssp             ECCCE--EEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCE--EEEEeCCCccHHHHHHHHHhh
Confidence            45676  999999999999999999864

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.23  E-value=8e-05  Score=67.92  Aligned_cols=59  Identities=20%  Similarity=0.282  Sum_probs=36.0

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCccc
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAY  141 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~  141 (736)
                      |+++|.+++|||+|+|+|.|....+ +++ .-.+|.....+...       ..+..+.+.||+|+...
T Consensus         3 I~liG~~n~GKSSLin~l~g~~~~~-~~~-~~~~~~~~~~~~~~-------~~~~~~~~~Dt~G~~~~   61 (160)
T d1xzpa2           3 MVIVGKPNVGKSTLLNRLLNEDRAI-VTD-IPGTTRDVISEEIV-------IRGILFRIVDTAGVRSE   61 (160)
T ss_dssp             EEEECCHHHHTCHHHHHHHHHTBCC-CCC-SSCCSSCSCCEEEE-------ETTEEEEEEESSCCCSS
T ss_pred             EEEECCCCCCHHHHHHHHhCCCcee-eec-cccccccceeEEEE-------eCCeeEEeccccccccC
Confidence            7899999999999999999865222 111 11222222111111       11356888999998543

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.20  E-value=0.00016  Score=70.76  Aligned_cols=57  Identities=21%  Similarity=0.213  Sum_probs=33.1

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCC-----C-ccceEEeeccccccccCCCCceEEEEeecCCCccc
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHR-----P-CTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAY  141 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~-----~-~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~  141 (736)
                      ..++|+.|.|||+|+|.|++... ..++.-..     + +|...-+..      .++|    -+++||||+.++
T Consensus        98 ~~~~G~SGVGKSTLiN~L~~~~~-~~T~~vs~~~~rGrHTTt~~~l~~------l~~g----g~iiDTPG~r~~  160 (225)
T d1u0la2          98 STMAGLSGVGKSSLLNAINPGLK-LRVSEVSEKLQRGRHTTTTAQLLK------FDFG----GYVVDTPGFANL  160 (225)
T ss_dssp             EEEECSTTSSHHHHHHHHSTTCC-CC-------------CCCSCCEEE------CTTS----CEEESSCSSTTC
T ss_pred             EEEECCCCCCHHHHHHhhcchhh-hhccCcccccCCCCccccceeEEE------ECCC----cEEEeCCccccc
Confidence            46789999999999999998631 33332111     1 233332321      1233    378999998644

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=97.16  E-value=0.00084  Score=62.47  Aligned_cols=61  Identities=23%  Similarity=0.429  Sum_probs=38.0

Q ss_pred             CCCEEEEEeeCCCCCChhHHHHHHhCCCCc--ccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698           68 KEPIGVVSVCGRARQGKSFILNQLLGRSSG--FQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA  140 (736)
Q Consensus        68 ~~~v~vVsv~G~~rtGKS~LlN~l~~~~~g--F~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~  140 (736)
                      +..+. |+|+|..++|||+|+|.|+|....  .....+...++.|.+.|.         |  ..+.++||+|+..
T Consensus         6 ~~~~k-V~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~---------~--~~~~~~d~~g~~~   68 (186)
T d1mkya2           6 TDAIK-VAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFID---------G--RKYVFVDTAGLRR   68 (186)
T ss_dssp             CSCEE-EEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEET---------T--EEEEESSCSCC--
T ss_pred             CCCCE-EEEECCCCCCHHHHHHHHHCCCcceeecccccccccceeeeccC---------C--ceeeeeccCCccc
Confidence            34455 899999999999999999987521  111233344555665552         2  4678899999853

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=97.10  E-value=0.0003  Score=63.99  Aligned_cols=54  Identities=30%  Similarity=0.439  Sum_probs=34.8

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCccc-ccCC---CCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQ-VAST---HRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA  140 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~-~~~~---~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~  140 (736)
                      |+++|++.+|||+|+|+|+|..  +. +.+.   ......+.-.|           ....+.++||+|+..
T Consensus         4 I~lvG~~nvGKSsLin~l~~~~--~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~d~~g~~~   61 (161)
T d2gj8a1           4 VVIAGRPNAGKSSLLNALAGRE--AAIVTDIAGTTRDVLREHIHI-----------DGMPLHIIDTAGLRE   61 (161)
T ss_dssp             EEEEESTTSSHHHHHHHHHTSC--CSCCCSSTTCCCSCEEEEEEE-----------TTEEEEEEECCCCSC
T ss_pred             EEEECCCCCCHHHHHHHHhCCC--ceEeecccccccceEeeeeec-----------cCceeeecccccccc
Confidence            6799999999999999999875  22 2211   11111122221           125688999999854

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.96  E-value=0.00061  Score=62.88  Aligned_cols=58  Identities=31%  Similarity=0.561  Sum_probs=40.3

Q ss_pred             CCEEEEEeeCCCCCChhHHHHHHhCCCCcccc----cCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           69 EPIGVVSVCGRARQGKSFILNQLLGRSSGFQV----ASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        69 ~~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~----~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      .-+++|+|+|..++|||+|+|+|.|..  +..    ..+..+.+.|+++-.           ...++++|+.|..
T Consensus         3 ~~~~~I~iiG~~nvGKSSLin~L~~~~--~~~~~~~~~t~~~~~~~~~~~~-----------~~~~~~~~~~~~~   64 (179)
T d1egaa1           3 SYCGFIAIVGRPNVGKSTLLNKLLGQK--ISITSRKAQTTRHRIVGIHTEG-----------AYQAIYVDTPGLH   64 (179)
T ss_dssp             CEEEEEEEECSSSSSHHHHHHHHHTCS--EEECCCCSSCCSSCEEEEEEET-----------TEEEEEESSSSCC
T ss_pred             ccccEEEEECCCCCCHHHHHHHHhCCC--ceeeccCCCceEEEEEeeeecC-----------CceeEeecCCCce
Confidence            347789999999999999999999875  222    223444455655542           1356778888853

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=96.95  E-value=0.00047  Score=64.44  Aligned_cols=98  Identities=11%  Similarity=0.133  Sum_probs=49.1

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcccCCCCccchHHH
Q 004698           73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYDQTGTYSTQIF  152 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~~~~~~~d~~IF  152 (736)
                      -|||+|...+|||+|+|.|.+....-.........++|+-.-...... .  ..+..+.++||+|..++     ......
T Consensus         7 nIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~--~~~~~~~~~d~~g~~~~-----~~~~~~   78 (179)
T d1wb1a4           7 NLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAF-K--LENYRITLVDAPGHADL-----IRAVVS   78 (179)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTTC--------------------CCCEE-E--ETTEEEEECCCSSHHHH-----HHHHHH
T ss_pred             EEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeecccccccc-c--cCCcccccccccccccc-----ccchhh
Confidence            499999999999999999997532111000111112233111111100 0  11356788999985321     123344


Q ss_pred             HHhhhccceEEEccCCCCchHHhhhh
Q 004698          153 SLAVLLSSMFIYNQMGGIDESAIDRL  178 (736)
Q Consensus       153 aLa~LLSS~~IyN~~g~i~e~~l~~L  178 (736)
                      ++...=.-++++.....+..++.+.+
T Consensus        79 ~l~~~d~~ilv~d~~~g~~~~~~~~~  104 (179)
T d1wb1a4          79 AADIIDLALIVVDAKEGPKTQTGEHM  104 (179)
T ss_dssp             HTTSCCEEEEEEETTTCSCHHHHHHH
T ss_pred             hhhhccccccccccccccchhhhhhh
Confidence            55554445567777776776655433

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.68  E-value=0.00097  Score=63.39  Aligned_cols=56  Identities=20%  Similarity=0.335  Sum_probs=39.0

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      |.|+|+.++|||+|+|+|++..  |....+....+.+...+.        ++..+.+.+.||+|..
T Consensus         3 V~ivG~~~~GKTsLl~~l~~~~--~~~~~~t~~~~~~~~~~~--------~~~~~~~~~~d~~g~~   58 (207)
T d2fh5b1           3 VLFVGLCDSGKTLLFVRLLTGQ--YRDTQTSITDSSAIYKVN--------NNRGNSLTLIDLPGHE   58 (207)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSC--CCCBCCCCSCEEEEEECS--------STTCCEEEEEECCCCH
T ss_pred             EEEECCCCCCHHHHHHHHHcCC--CCcccCCeeEEEEEEEEe--------eeeeeeeeeeeccccc
Confidence            7899999999999999999865  443333333445554432        2445678889999853

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=96.54  E-value=0.00033  Score=68.62  Aligned_cols=24  Identities=25%  Similarity=0.360  Sum_probs=19.7

Q ss_pred             CCEEEEEeeCCCCCChhHHHHHHhCC
Q 004698           69 EPIGVVSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        69 ~~v~vVsv~G~~rtGKS~LlN~l~~~   94 (736)
                      +.++  .++|+.|.|||+|+|.|+|.
T Consensus        97 ~~~~--vl~G~SGVGKSSLiN~L~~~  120 (231)
T d1t9ha2          97 DKTT--VFAGQSGVGKSSLLNAISPE  120 (231)
T ss_dssp             TSEE--EEEESHHHHHHHHHHHHCC-
T ss_pred             cceE--EEECCCCccHHHHHHhhccH
Confidence            4444  48899999999999999986

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.49  E-value=0.00082  Score=63.54  Aligned_cols=23  Identities=26%  Similarity=0.401  Sum_probs=21.1

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      .|+|+|++++|||+|+|+|.|..
T Consensus         5 ~V~lvG~~n~GKTSLln~l~~~~   27 (209)
T d1nrjb_           5 SIIIAGPQNSGKTSLLTLLTTDS   27 (209)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999999865

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=96.45  E-value=0.0015  Score=59.40  Aligned_cols=53  Identities=23%  Similarity=0.302  Sum_probs=38.6

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      |.|+|+.++|||+|+|+|.+..  |.   +. ..|.|+-.....       ..++.+.+.||+|..
T Consensus         5 i~ivG~~~~GKTsLi~~l~~~~--~~---~~-~~t~~~~~~~~~-------~~~~~~~~~D~~G~~   57 (165)
T d1ksha_           5 LLMLGLDNAGKTTILKKFNGED--VD---TI-SPTLGFNIKTLE-------HRGFKLNIWDVGGQK   57 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHTTCC--CS---SC-CCCSSEEEEEEE-------ETTEEEEEEEECCSH
T ss_pred             EEEECCCCCCHHHHHHHHcCCC--CC---cc-cceEeeeeeecc-------ccccceeeeecCcch
Confidence            6699999999999999998765  32   22 346676655432       234789999999954

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.45  E-value=0.00093  Score=61.81  Aligned_cols=59  Identities=25%  Similarity=0.235  Sum_probs=39.5

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      |.++|..++|||+|+|++.+..  |...+  .+.|.|+......+.   .+|..+.+.++|+.|..
T Consensus         6 v~lvG~~~vGKTsLi~~~~~~~--~~~~~--~~~t~~~~~~~~~~~---~~~~~~~~~~~d~~~~~   64 (172)
T d2g3ya1           6 VVLIGEQGVGKSTLANIFAGVH--DSMDS--DCEVLGEDTYERTLM---VDGESATIILLDMWENK   64 (172)
T ss_dssp             EEEECCTTSSHHHHHHHHHCCC--CTTCC--C---CCTTEEEEEEE---ETTEEEEEEEECCTTTT
T ss_pred             EEEECCCCcCHHHHHHHHHhCc--CCccc--cccceeeecceeeec---cCCceeeeeeecccccc
Confidence            6789999999999999999765  32222  234566654443332   25677889999998753

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.42  E-value=0.0016  Score=59.49  Aligned_cols=57  Identities=19%  Similarity=0.295  Sum_probs=37.3

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccC-CCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVAS-THRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~-~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      |.|+|..++|||+|+|+|.+..  |.-.. .....+..+|.+.       .+|..+.+.+.||+|..
T Consensus         5 i~vvG~~~vGKTSli~~l~~~~--~~~~~~~t~~~~~~~~~i~-------~~~~~~~~~i~Dt~G~~   62 (166)
T d1g16a_           5 ILLIGDSGVGKSCLLVRFVEDK--FNPSFITTIGIDFKIKTVD-------INGKKVKLQIWDTAGQE   62 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHHCC--CCC-------CCEEEEEEE-------SSSCEEEEEEECCTTGG
T ss_pred             EEEECCCCcCHHHHHHHHHhCC--CCCccCCccceeEEEEEEE-------ECCEEEEEEEEECCCch
Confidence            6799999999999999998754  43221 1112233444443       24666888899999964

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.41  E-value=0.0017  Score=59.69  Aligned_cols=60  Identities=23%  Similarity=0.371  Sum_probs=37.8

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA  140 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~  140 (736)
                      |.|+|+.++|||+|+|++++..  |....  .+.|.|+-.....+   ..+|..+.+-+.||.|...
T Consensus         9 i~vvG~~~vGKTsli~~~~~~~--~~~~~--~~~~~~~~~~~~~~---~~~~~~~~l~i~Dt~G~e~   68 (170)
T d2g6ba1           9 VMLVGDSGVGKTCLLVRFKDGA--FLAGT--FISTVGIDFRNKVL---DVDGVKVKLQMWDTAGQER   68 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSC--CCCCC--CCCCCSCEEEEEEE---EETTEEEEEEEEECCCC--
T ss_pred             EEEECCCCcCHHHHHHHHHhCC--CCccc--ccceeeeeeEEEEE---EecCcEEEEEEEECCCchh
Confidence            7899999999999999998754  43221  12232322222111   1246678899999999643

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.38  E-value=0.00095  Score=61.60  Aligned_cols=58  Identities=16%  Similarity=0.254  Sum_probs=39.7

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      |.|+|+.++|||+|+|+|.+..  |.-.   ...|.|+-++...+.   .+|..+.+.+.||.|..
T Consensus         6 i~vvG~~~vGKTsli~~~~~~~--f~~~---~~~Ti~~~~~~~~~~---~~~~~~~l~i~D~~g~~   63 (170)
T d1i2ma_           6 LVLVGDGGTGKTTFVKRHLTGE--FEKK---YVATLGVEVHPLVFH---TNRGPIKFNVWDTAGQE   63 (170)
T ss_dssp             EEEEECTTSSHHHHHHTTC-------CC---EEEETTEEEEEEEEC---BTTCCEEEEEEECTTHH
T ss_pred             EEEECCCCcCHHHHHHHHHhCC--CCcc---cccceeccccccccc---ccccccccccccccccc
Confidence            6788999999999999998765  5322   234667665554432   35777899999999964

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.36  E-value=0.0014  Score=60.21  Aligned_cols=57  Identities=21%  Similarity=0.260  Sum_probs=37.0

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCC
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI  138 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~  138 (736)
                      |.|+|..++|||+|+|+|.+..  |.-..   ..|.|+-.+...+.   .++..+.+-++||+|.
T Consensus         8 i~vvG~~~vGKTsLi~~l~~~~--~~~~~---~~~~~~~~~~~~~~---~~~~~~~l~~wDt~G~   64 (169)
T d3raba_           8 ILIIGNSSVGKTSFLFRYADDS--FTPAF---VSTVGIDFKVKTIY---RNDKRIKLQIWDTAGQ   64 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSC--CCSSC---CCCCSEEEEEEEEE---ETTEEEEEEEEEECCS
T ss_pred             EEEECCCCcCHHHHHHHHHcCC--CCccc---ccccccceeeEEEE---eecceEEEEEEECCCc
Confidence            7899999999999999998764  43221   22333322222221   1344577889999995

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.23  E-value=0.0016  Score=59.45  Aligned_cols=58  Identities=21%  Similarity=0.329  Sum_probs=38.3

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      |.++|..++|||+|+|+|.+..  |.-.   ...|.|+......+   ..+|..+.+.+.||.|..
T Consensus         5 v~liG~~~vGKSsLi~rl~~~~--~~~~---~~~ti~~~~~~~~~---~~~~~~~~~~i~d~~g~~   62 (164)
T d1z2aa1           5 MVVVGNGAVGKSSMIQRYCKGI--FTKD---YKKTIGVDFLERQI---QVNDEDVRLMLWDTAGQE   62 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHHCC--CCCC---SSCCCSSSEEEEEE---EETTEEEEEEEECCTTGG
T ss_pred             EEEECCCCcCHHHHHHHHHhCC--CCcc---cccccccccceeee---eecCceeeeeeeccCCcc
Confidence            6799999999999999998654  4321   12244433322222   124667889999999964

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.18  E-value=0.0037  Score=57.38  Aligned_cols=57  Identities=28%  Similarity=0.384  Sum_probs=37.1

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCC
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI  138 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~  138 (736)
                      |.|+|..++|||+|+|+|.+..  |.-.  . +.|.|.=.....+   ..++....+.+.||+|.
T Consensus         8 I~lvG~~~vGKTsll~~~~~~~--~~~~--~-~~t~~~~~~~~~~---~~~~~~~~~~i~D~~G~   64 (174)
T d2bmea1           8 FLVIGNAGTGKSCLLHQFIEKK--FKDD--S-NHTIGVEFGSKII---NVGGKYVKLQIWDTAGQ   64 (174)
T ss_dssp             EEEEESTTSSHHHHHHHHHHSS--CCTT--C-CCCSEEEEEEEEE---EETTEEEEEEEEEECCS
T ss_pred             EEEECCCCcCHHHHHHHHHhCC--CCcc--c-ccccccceeeEEE---EecCcceeEEEEECCCc
Confidence            7799999999999999998654  5322  1 2233332222212   12455678889999994

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.18  E-value=0.0017  Score=61.14  Aligned_cols=59  Identities=22%  Similarity=0.318  Sum_probs=37.4

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA  140 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~  140 (736)
                      |.|+|+.++|||+|+|+|.+..  |.-..   ..|.|+-.-...+   ..+|..+.+-++||+|...
T Consensus         9 ivvvG~~~vGKTsli~~l~~~~--~~~~~---~~t~~~~~~~~~i---~~~~~~~~l~i~Dt~G~e~   67 (194)
T d2bcgy1           9 LLLIGNSGVGKSCLLLRFSDDT--YTNDY---ISTIGVDFKIKTV---ELDGKTVKLQIWDTAGQER   67 (194)
T ss_dssp             EEEEESTTSSHHHHHHHHHHCC--CCTTC---CCSSCCCEEEEEE---EETTEEEEEEEECCTTTTT
T ss_pred             EEEECCCCcCHHHHHHHHhhCC--CCCCc---CCccceeEEEEEE---EEeeEEEEEEEEECCCchh
Confidence            6789999999999999998654  43221   1233322221111   1235568899999999643

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.13  E-value=0.002  Score=59.26  Aligned_cols=57  Identities=16%  Similarity=0.309  Sum_probs=37.6

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCC
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI  138 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~  138 (736)
                      |.|+|..++|||+|+|+|.+..  |..... ...+.++..+...     .+|..+.+.+.||+|.
T Consensus         8 i~lvG~~~vGKTsLi~~l~~~~--f~~~~~-~~~~~~~~~~~~~-----~~~~~~~l~i~Dt~G~   64 (171)
T d2ew1a1           8 IVLIGNAGVGKTCLVRRFTQGL--FPPGQG-ATIGVDFMIKTVE-----INGEKVKLQIWDTAGQ   64 (171)
T ss_dssp             EEEEESTTSSHHHHHHHHHHSS--CCTTCC-CCCSEEEEEEEEE-----ETTEEEEEEEEEECCS
T ss_pred             EEEECCCCcCHHHHHHHHHhCC--CCCccc-ccccceEEEEEEE-----ECCEEEEEEEEECCCc
Confidence            6789999999999999999765  543321 1122233333221     2356688999999994

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=96.12  E-value=0.0026  Score=56.78  Aligned_cols=53  Identities=17%  Similarity=0.172  Sum_probs=34.7

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      |.|+|+.++|||+|+|+|.+..  |.....  ..+....         ..++..+.+.+.|++|..
T Consensus         3 ivlvG~~~vGKSsLi~~l~~~~--~~~~~~--~~~~~~~---------~~~~~~~~~~~~d~~g~~   55 (160)
T d1r8sa_           3 ILMVGLDAAGKTTILYKLKLGE--IVTTIP--TIGFNVE---------TVEYKNISFTVWDVGGQD   55 (160)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHC--SSCCCC--CSSCCEE---------EEECSSCEEEEEECCCCG
T ss_pred             EEEECCCCCCHHHHHHHHhcCC--CCcccc--ceeeEEE---------EEeeeeEEEEEecCCCcc
Confidence            5699999999999999998765  432111  1111111         123455789999999964

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.12  E-value=0.003  Score=60.43  Aligned_cols=102  Identities=14%  Similarity=0.146  Sum_probs=59.6

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCC------CcccccCCCCC----ccceEEeeccccccccCCCCceEEEEeecCCCcccC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRS------SGFQVASTHRP----CTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYD  142 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~------~gF~~~~~~~~----~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~~  142 (736)
                      =|+|+|-..+|||+|+|+|+...      ..+..+.+...    ..+||=+-..+....   ..+..+-|+||||..++-
T Consensus         5 ni~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~---~~~~~i~iiDtPGh~df~   81 (204)
T d2c78a3           5 NVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYE---TAKRHYSHVDCPGHADYI   81 (204)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEE---CSSCEEEEEECCCSGGGH
T ss_pred             EEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEE---eCCeEEEEEeCCCchhhH
Confidence            38899999999999999998421      00111000000    011333322222111   123567889999964322


Q ss_pred             CCCccchHHHHHhhhccceEEEccCCCCchHHhhhhHHHH
Q 004698          143 QTGTYSTQIFSLAVLLSSMFIYNQMGGIDESAIDRLSLVT  182 (736)
Q Consensus       143 ~~~~~d~~IFaLa~LLSS~~IyN~~g~i~e~~l~~L~~v~  182 (736)
                           ...+-+++..=.-++|......+..+..++|.+..
T Consensus        82 -----~~~~~~~~~aD~avlVvda~~Gv~~qt~~~~~~~~  116 (204)
T d2c78a3          82 -----KNMITGAAQMDGAILVVSAADGPMPQTREHILLAR  116 (204)
T ss_dssp             -----HHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHH
T ss_pred             -----HHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHH
Confidence                 23456666655667888888888888887776554

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.08  E-value=0.0034  Score=57.98  Aligned_cols=57  Identities=21%  Similarity=0.300  Sum_probs=38.0

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCC-ccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRP-CTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~-~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      |.|+|..++|||+|+|+|.+..  |........ .+.+++.+.       .++..+.+.+.||+|..
T Consensus        10 i~vvG~~~vGKTsli~~l~~~~--~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~i~Dt~G~~   67 (177)
T d1x3sa1          10 ILIIGESGVGKSSLLLRFTDDT--FDPELAATIGVDFKVKTIS-------VDGNKAKLAIWDTAGQE   67 (177)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSC--CCTTCCCCCSEEEEEEEEE-------ETTEEEEEEEEEECSSG
T ss_pred             EEEECCCCcCHHHHHHHHHhCC--CCCccccceeecceeEEEE-------EeccccEEEEEECCCch
Confidence            7799999999999999999765  433221111 122333332       23556789999999964

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.05  E-value=0.0029  Score=57.43  Aligned_cols=58  Identities=22%  Similarity=0.358  Sum_probs=39.9

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      |.|+|..++|||+|+|+|.+..  |.-.   ...|.|+..+...+.   .+|..+.+.+.||.|..
T Consensus         3 v~vvG~~~vGKTsLi~r~~~~~--~~~~---~~~~~~~~~~~~~~~---~~~~~~~~~i~d~~g~~   60 (164)
T d1yzqa1           3 LVFLGEQSVGKTSLITRFMYDS--FDNT---YQATIGIDFLSKTMY---LEDRTIRLQLWDTAGQE   60 (164)
T ss_dssp             EEEEESTTSSHHHHHHHHHHSC--CCSS---CCCCCSEEEEEEEEE---CSSCEEEEEEEEECCSG
T ss_pred             EEEECCCCcCHHHHHHHHHhCC--CCCc---cccceeeeccceeec---cCCCceeeeecccCCcc
Confidence            6788999999999999999765  4321   123444444433332   24667889999999964

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=96.00  E-value=0.003  Score=57.48  Aligned_cols=53  Identities=19%  Similarity=0.236  Sum_probs=38.1

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCC
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI  138 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~  138 (736)
                      |.++|+.++|||+|+|+|.+..  |.-  .. ..|.|+-.+...       +.++.+.++||+|-
T Consensus         5 i~i~G~~~~GKTsLl~~l~~~~--~~~--~~-~~T~~~~~~~~~-------~~~~~~~i~D~~G~   57 (164)
T d1zd9a1           5 LTLVGLQYSGKTTFVNVIASGQ--FNE--DM-IPTVGFNMRKIT-------KGNVTIKLWDIGGQ   57 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSC--CCC--SC-CCCCSEEEEEEE-------ETTEEEEEEEECCS
T ss_pred             EEEECCCCCCHHHHHHHHHcCC--CCC--cc-cccceeeeeeee-------eeeEEEEEeecccc
Confidence            5689999999999999998765  432  22 347787665432       23478889999984

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.99  E-value=0.0028  Score=58.10  Aligned_cols=56  Identities=23%  Similarity=0.220  Sum_probs=33.4

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      |.|+|..++|||+|+|+|.+..  |.-.    +.|.|... ...+   ..+|..+.+.+.||+|..
T Consensus         4 i~lvG~~~vGKTsLi~~~~~~~--~~~~----~~~~~~~~-~~~i---~~~~~~~~l~i~D~~g~e   59 (168)
T d2gjsa1           4 VLLLGAPGVGKSALARIFGGVE--DGPE----AEAAGHTY-DRSI---VVDGEEASLMVYDIWEQD   59 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHTC---------------CEEE-EEEE---EETTEEEEEEEEECC---
T ss_pred             EEEECCCCcCHHHHHHHHhCCc--cCCc----CCeeeeee-ccee---eccccccceeeeeccccc
Confidence            6789999999999999999865  3221    22333222 1111   235778999999999964

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=95.99  E-value=0.0056  Score=57.59  Aligned_cols=26  Identities=19%  Similarity=0.330  Sum_probs=22.6

Q ss_pred             CCEEEEEeeCCCCCChhHHHHHHhCC
Q 004698           69 EPIGVVSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        69 ~~v~vVsv~G~~rtGKS~LlN~l~~~   94 (736)
                      +|..=|+|+|--..|||||+|+|+|.
T Consensus         3 ~~~inIaiiGhvd~GKSTL~~~L~g~   28 (195)
T d1kk1a3           3 QAEVNIGMVGHVDHGKTTLTKALTGV   28 (195)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHTC
T ss_pred             CCcEEEEEEeccCCcHHHHHHHHHhh
Confidence            56666999998889999999999985

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.94  E-value=0.0012  Score=61.06  Aligned_cols=59  Identities=22%  Similarity=0.346  Sum_probs=23.4

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA  140 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~  140 (736)
                      |.|+|..++|||+|+|+|++..  |.-.   .+.|.|.-.+..-+.   .+|..+.+-++||+|...
T Consensus         9 i~vvG~~~vGKTsLi~~l~~~~--~~~~---~~~t~~~~~~~~~~~---~~~~~~~l~i~D~~G~e~   67 (173)
T d2fu5c1           9 LLLIGDSGVGKTCVLFRFSEDA--FNST---FISTIGIDFKIRTIE---LDGKRIKLQIWDTAGQER   67 (173)
T ss_dssp             EEEECCCCC------------------C---HHHHHCEEEEEEEEE---ETTEEEEEEEEEC-----
T ss_pred             EEEECCCCcCHHHHHHHHHhCC--CCCc---cCccccceEEEEEEE---ECCEEEEEEEEECCCchh
Confidence            6789999999999999999754  5321   123444433332221   246668888999999643

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.92  E-value=0.0047  Score=56.59  Aligned_cols=59  Identities=14%  Similarity=0.237  Sum_probs=33.1

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      |.|+|+.++|||+|+|+|.+..  |.-..   ..|.|.......+.  ..++..+.+.+.||.|..
T Consensus         5 i~~vG~~~vGKSsLi~~~~~~~--~~~~~---~~t~~~~~~~~~~~--~~~~~~~~~~~~d~~g~~   63 (175)
T d1ky3a_           5 VIILGDSGVGKTSLMHRYVNDK--YSQQY---KATIGADFLTKEVT--VDGDKVATMQVWDTAGQE   63 (175)
T ss_dssp             EEEECCTTSSHHHHHHHHHHSC--CCTTC------CCCSCEEEEEC--CSSSCCEEEEEECCC---
T ss_pred             EEEECCCCcCHHHHHHHHHcCC--CCCcc---Ccccccceeeeeee--ecCcccccceeeccCCch
Confidence            7799999999999999998765  43211   11222211111111  123344678899999953

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.89  E-value=0.0029  Score=58.36  Aligned_cols=57  Identities=21%  Similarity=0.296  Sum_probs=37.2

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCC-CCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVAST-HRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~-~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      |.|+|+.++|||+|+|+|++..  |.-... ....+...|...       .+|..+.+-+.||+|..
T Consensus         7 i~vvG~~~vGKTsLi~~~~~~~--~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~i~d~~g~e   64 (175)
T d2f9la1           7 VVLIGDSGVGKSNLLSRFTRNE--FNLESKSTIGVEFATRSIQ-------VDGKTIKAQIWDTAGQE   64 (175)
T ss_dssp             EEEESSTTSSHHHHHHHHHHSC--CCC---CCCSCEEEEEEEE-------ETTEEEEEEEEECSSGG
T ss_pred             EEEECCCCcCHHHHHHHHHhCC--CCCcccccccceeeeEEEE-------ECCEEEEEEecccCCcH
Confidence            7799999999999999998754  432221 111222333321       24666889999999953

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.88  E-value=0.0039  Score=55.46  Aligned_cols=53  Identities=15%  Similarity=0.054  Sum_probs=35.3

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      |.++|+.++|||+|+|+|.+..  |..   . ..|.|.......+       ....+.+.|+.|..
T Consensus         3 I~liG~~nvGKSSLln~l~~~~--~~~---~-~~t~~~~~~~~~~-------~~~~~~~~~~~~~~   55 (166)
T d2qtvb1           3 LLFLGLDNAGKTTLLHMLKNDR--LAT---L-QPTWHPTSEELAI-------GNIKFTTFDLGGHI   55 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSC--CCC---C-CCCCSCEEEEECC-------TTCCEEEEECCCSG
T ss_pred             EEEECCCCCCHHHHHHHHhCCC--CCe---e-eceeeEeEEEecc-------CCeeEEEEeeccch
Confidence            6799999999999999999865  421   1 2244544433221       22457788998854

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.78  E-value=0.0044  Score=56.54  Aligned_cols=58  Identities=22%  Similarity=0.336  Sum_probs=39.5

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      |.|+|..++|||+|++++.+..  |.-   ....|.|.-.....+   ..+|..+.+.+.||.|..
T Consensus         6 ivlvG~~~vGKTsLi~r~~~~~--f~~---~~~~t~~~~~~~~~~---~~~~~~~~~~~~d~~g~~   63 (167)
T d1z08a1           6 VVLLGEGCVGKTSLVLRYCENK--FND---KHITTLGASFLTKKL---NIGGKRVNLAIWDTAGQE   63 (167)
T ss_dssp             EEEECCTTSCHHHHHHHHHHCC--CCS---SCCCCCSCEEEEEEE---ESSSCEEEEEEEECCCC-
T ss_pred             EEEECCCCcCHHHHHHHHHhCC--CCc---ccccccccchheeee---ccCCccceeeeeccCCcc
Confidence            6789999999999999998765  542   122344543333322   235667889999999964

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.77  E-value=0.0051  Score=56.00  Aligned_cols=57  Identities=21%  Similarity=0.342  Sum_probs=37.7

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCC-CCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVAST-HRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~-~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      |.|+|..++|||+|+|+|++..  |..... ....+.+.+.+.       .+|..+.+.+.||.|..
T Consensus         7 ivlvG~~~vGKTsli~~~~~~~--~~~~~~~~~~~~~~~~~~~-------~~~~~~~l~i~D~~g~~   64 (166)
T d1z0fa1           7 YIIIGDMGVGKSCLLHQFTEKK--FMADCPHTIGVEFGTRIIE-------VSGQKIKLQIWDTAGQE   64 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSC--CCSSCTTSCCCCEEEEEEE-------ETTEEEEEEEEECTTGG
T ss_pred             EEEECCCCcCHHHHHHHHHhCC--CCCcccccccccceeEEEE-------ECCEEEEEEEeccCCch
Confidence            7789999999999999999765  433221 111122222221       24667889999999953

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=95.72  E-value=0.006  Score=54.63  Aligned_cols=54  Identities=20%  Similarity=0.228  Sum_probs=37.1

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA  140 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~  140 (736)
                      |+++|.+++|||+|+|+|.+..  |..  +  ..|.|+.....+.       ..+.+.+.|+.|.+.
T Consensus         8 I~ivG~~~vGKSSLi~~~~~~~--~~~--~--~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~   61 (169)
T d1upta_           8 ILILGLDGAGKTTILYRLQVGE--VVT--T--IPTIGFNVETVTY-------KNLKFQVWDLGGLTS   61 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSS--CCC--C--CCCSSEEEEEEEE-------TTEEEEEEEECCCGG
T ss_pred             EEEECCCCCCHHHHHHHHhCCC--Ccc--e--ecccceeeeeecc-------CceEEEEeecccccc
Confidence            7799999999999999999875  432  1  2355554443221       236778888888653

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.71  E-value=0.007  Score=55.19  Aligned_cols=57  Identities=21%  Similarity=0.211  Sum_probs=38.6

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      |.|+|..++|||+|+|+|++..  |.-.  . ..|.|..... .+   ..+|..+.+.+.||.|..
T Consensus         5 i~viG~~~vGKTsLi~r~~~~~--f~~~--~-~~T~~~~~~~-~~---~~~~~~~~l~~~d~~g~~   61 (171)
T d2erxa1           5 VAVFGAGGVGKSSLVLRFVKGT--FRES--Y-IPTVEDTYRQ-VI---SCDKSICTLQITDTTGSH   61 (171)
T ss_dssp             EEEECCTTSSHHHHHHHHHTCC--CCSS--C-CCCSCEEEEE-EE---EETTEEEEEEEEECCSCS
T ss_pred             EEEECCCCCCHHHHHHHHHhCC--CCCc--c-Ccceeecccc-ce---eeccccceeccccccccc
Confidence            5689999999999999999865  5321  1 2355543221 11   235677889999999854

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.68  E-value=0.0051  Score=56.25  Aligned_cols=57  Identities=23%  Similarity=0.309  Sum_probs=40.0

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      |.|+|+.++|||.|+|++.+..  |.-.  . ..|.|+-+....    ..+|..+.+-+.||.|..
T Consensus         5 i~lvG~~~vGKTsli~r~~~~~--f~~~--~-~pTi~~~~~~~~----~~~~~~~~l~i~D~~g~~   61 (168)
T d2atva1           5 LAIFGRAGVGKSALVVRFLTKR--FIWE--Y-DPTLESTYRHQA----TIDDEVVSMEILDTAGQE   61 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHHSC--CCSC--C-CTTCCEEEEEEE----EETTEEEEEEEEECCCCC
T ss_pred             EEEECCCCCCHHHHHHHHHhCC--CCCc--c-CCceeccccccc----cccccceEEEEeeccccc
Confidence            5789999999999999999765  5322  1 235565433221    235777899999999853

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.67  E-value=0.0046  Score=56.62  Aligned_cols=57  Identities=23%  Similarity=0.188  Sum_probs=38.0

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      |.|+|..++|||+|+|++.+..  |.-.   ...|.|.+.....    ..+|..+.+.++||.|..
T Consensus         8 i~lvG~~~vGKTsLi~r~~~~~--f~~~---~~~t~~~~~~~~~----~~~~~~~~~~~~d~~g~~   64 (171)
T d2erya1           8 LVVVGGGGVGKSALTIQFIQSY--FVTD---YDPTIEDSYTKQC----VIDDRAARLDILDTAGQE   64 (171)
T ss_dssp             EEEEECTTSSHHHHHHHHHHSC--CCSS---CCTTCCEEEEEEE----EETTEEEEEEEEECC---
T ss_pred             EEEECCCCCCHHHHHHHHHhCC--CCcc---cCcccccceeeee----eecccccccccccccccc
Confidence            7789999999999999998754  4321   1235555544322    235677889999999964

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.65  E-value=0.0053  Score=56.06  Aligned_cols=58  Identities=19%  Similarity=0.328  Sum_probs=40.5

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      |.|+|..++|||+|++++.+..  |.-   ..+.|.|+-+....+   ..+|..+.+-+.||.|..
T Consensus         6 i~vvG~~~vGKTsLi~~~~~~~--f~~---~~~~t~~~~~~~~~i---~~~~~~~~l~i~d~~g~~   63 (170)
T d1ek0a_           6 LVLLGEAAVGKSSIVLRFVSND--FAE---NKEPTIGAAFLTQRV---TINEHTVKFEIWDTAGQE   63 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSC--CCT---TCCCCSSEEEEEEEE---EETTEEEEEEEEEECCSG
T ss_pred             EEEECCCCcCHHHHHHHHHhCC--CCc---cccccccceeecccc---ccccccccccccccCCch
Confidence            5689999999999999998765  432   223466654433222   234667889999999953

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.65  E-value=0.0061  Score=55.97  Aligned_cols=57  Identities=25%  Similarity=0.304  Sum_probs=38.0

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      |.|+|..++|||+|+|+|.+..  |.-  ...+.+  .+.+...+   ..+|..+.+.++||.|..
T Consensus         9 v~lvG~~~vGKTsLi~r~~~~~--f~~--~~~~t~--~~~~~~~~---~~~~~~~~l~~~d~~g~~   65 (173)
T d2fn4a1           9 LVVVGGGGVGKSALTIQFIQSY--FVS--DYDPTI--EDSYTKIC---SVDGIPARLDILDTAGQE   65 (173)
T ss_dssp             EEEEECTTSSHHHHHHHHHHSS--CCS--SCCTTC--CEEEEEEE---EETTEEEEEEEEECCCTT
T ss_pred             EEEECCCCcCHHHHHHHHHhCC--CCc--cccccc--ccceeeEe---ccCCeeeeeecccccccc
Confidence            6699999999999999998654  422  112222  22222222   235777899999999964

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.57  E-value=0.0072  Score=55.95  Aligned_cols=59  Identities=20%  Similarity=0.342  Sum_probs=40.6

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA  140 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~  140 (736)
                      |.|+|..++|||+|+|+|.+..  |.-   ....|.|+=.+...+.   ..+..+.+.+.||.|...
T Consensus         5 v~vvG~~~vGKSSLi~~l~~~~--f~~---~~~~t~~~~~~~~~~~---~~~~~~~~~~~d~~g~~~   63 (184)
T d1vg8a_           5 VIILGDSGVGKTSLMNQYVNKK--FSN---QYKATIGADFLTKEVM---VDDRLVTMQIWDTAGQER   63 (184)
T ss_dssp             EEEECCTTSSHHHHHHHHHHSC--CCS---SCCCCCSEEEEEEEEE---SSSCEEEEEEEEECSSGG
T ss_pred             EEEECCCCcCHHHHHHHHHhCC--CCC---CcCCccceeeeeeeee---eCCceEEEEeeecCCccc
Confidence            6799999999999999999754  532   1223555544443332   245668899999999643

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.51  E-value=0.008  Score=54.60  Aligned_cols=58  Identities=26%  Similarity=0.366  Sum_probs=38.1

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA  140 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~  140 (736)
                      |.|+|..++|||+|+|+|.+..  |.-  .. ..|.|.-. ...+   ..+|..+.+-+.||.|...
T Consensus         7 v~liG~~~vGKTsLl~~~~~~~--f~~--~~-~~t~~~~~-~~~~---~~~~~~~~l~i~d~~g~~~   64 (167)
T d1xtqa1           7 IAILGYRSVGKSSLTIQFVEGQ--FVD--SY-DPTIENTF-TKLI---TVNGQEYHLQLVDTAGQDE   64 (167)
T ss_dssp             EEEEESTTSSHHHHHHHHHHSC--CCS--CC-CSSCCEEE-EEEE---EETTEEEEEEEEECCCCCT
T ss_pred             EEEECCCCcCHHHHHHHHHhCC--CCc--cc-Ccceeccc-ceEE---ecCcEEEEeeecccccccc
Confidence            6789999999999999998654  532  11 12333221 1111   2357778899999998654

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.50  E-value=0.0057  Score=55.90  Aligned_cols=58  Identities=21%  Similarity=0.316  Sum_probs=38.8

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      |.|+|..++|||+|+++|.+..  |.-..   +.|.|+-.....+.   .++..+.+.+.||.|..
T Consensus         9 i~vvG~~~vGKTsLi~~l~~~~--f~~~~---~~t~~~~~~~~~~~---~~~~~~~~~~~d~~g~~   66 (170)
T d1r2qa_           9 LVLLGESAVGKSSLVLRFVKGQ--FHEFQ---ESTIGAAFLTQTVC---LDDTTVKFEIWDTAGQE   66 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSC--CCTTC---CCCSSEEEEEEEEE---ETTEEEEEEEEEECCSG
T ss_pred             EEEECCCCcCHHHHHHHHHhCC--CCccc---ccccccccccceee---ccceEEEEEeccCCCch
Confidence            6889999999999999999654  53322   23444433322221   23456889999999954

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.49  E-value=0.0076  Score=55.78  Aligned_cols=59  Identities=29%  Similarity=0.410  Sum_probs=40.5

Q ss_pred             CEEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCC
Q 004698           70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI  138 (736)
Q Consensus        70 ~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~  138 (736)
                      |..=|.|+|..++|||+|+|++++..  |.-.+.    |.|.-. ...+   ..+|+.+.+.+.||.|.
T Consensus         4 p~~ki~vlG~~~vGKTsLi~~~~~~~--f~~~~~----t~~~~~-~~~i---~v~~~~~~l~i~Dt~g~   62 (175)
T d2bmja1           4 PELRLGVLGDARSGKSSLIHRFLTGS--YQVLEK----TESEQY-KKEM---LVDGQTHLVLIREEAGA   62 (175)
T ss_dssp             CEEEEEEECCTTTTHHHHHHHHHHSC--CCCCCC----SSCEEE-EEEE---EETTEEEEEEEEECSSC
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHhCC--CCCcCC----ccceeE-EEEe---ecCceEEEEEEeecccc
Confidence            44558999999999999999999875  643221    222221 1111   23677888999999985

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=95.38  E-value=0.016  Score=52.82  Aligned_cols=24  Identities=38%  Similarity=0.447  Sum_probs=21.1

Q ss_pred             EEEEeeCCCCCChhHHHHHHhCCC
Q 004698           72 GVVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      .-|+++|...+|||+|+|+|+|..
T Consensus        17 ~~I~lvG~~NvGKSSL~n~L~~~~   40 (188)
T d1puia_          17 IEVAFAGRSNAGKSSALNTLTNQK   40 (188)
T ss_dssp             EEEEEEECTTSSHHHHHTTTCCC-
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            349999999999999999999875

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.37  E-value=0.008  Score=55.08  Aligned_cols=58  Identities=24%  Similarity=0.345  Sum_probs=37.9

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccC-CCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVAS-THRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA  140 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~-~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~  140 (736)
                      |.|+|+.++|||+|+|++++..  |.... .....+...+.+..       ++..+.+.+.|+.|...
T Consensus         6 ivvvG~~~vGKTsli~r~~~~~--~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~i~d~~g~~~   64 (173)
T d2a5ja1           6 YIIIGDTGVGKSCLLLQFTDKR--FQPVHDLTIGVEFGARMVNI-------DGKQIKLQIWDTAGQES   64 (173)
T ss_dssp             EEEESSTTSSHHHHHHHHHHSC--CCC-----CCSSEEEEEEEE-------TTEEEEEEEECCTTGGG
T ss_pred             EEEECCCCcCHHHHHHHHhcCC--CCCCcccceeeccceeeeee-------eeeEEEEEeecccCccc
Confidence            5689999999999999998764  43321 11223444444432       24457889999999653

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.35  E-value=0.0078  Score=54.69  Aligned_cols=58  Identities=26%  Similarity=0.263  Sum_probs=38.4

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA  140 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~  140 (736)
                      |.|+|..++|||+|+|+|.+..  |.-.   .+.|.|+-.-.. +   ..+|..+.+.+.|+.|...
T Consensus         6 i~viG~~~vGKTsli~~l~~~~--~~~~---~~~~~~~~~~~~-~---~~~~~~~~l~~~d~~~~~~   63 (166)
T d1ctqa_           6 LVVVGAGGVGKSALTIQLIQNH--FVDE---YDPTIEDSYRKQ-V---VIDGETCLLDILDTAGQEE   63 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHHCC--CCCS---CCCCSEEEEEEE-E---EETTEEEEEEEEEECCCGG
T ss_pred             EEEECCCCCCHHHHHHHHHhCC--CCCc---cCCccceeeccc-e---eeeceeeeeeeeeccCccc
Confidence            7889999999999999999765  5321   123444321111 1   1246678899999998643

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.33  E-value=0.0069  Score=55.52  Aligned_cols=61  Identities=23%  Similarity=0.316  Sum_probs=38.6

Q ss_pred             CEEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCC
Q 004698           70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI  138 (736)
Q Consensus        70 ~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~  138 (736)
                      |+.=|.|+|+.++|||+|+|+|.+..  |.-..   +.|.|.-.+...+.   .+|..+.+.+.||.|.
T Consensus         5 ~~~KI~vvG~~~vGKSSli~~~~~~~--~~~~~---~~t~~~~~~~~~~~---~~~~~~~~~i~d~~g~   65 (174)
T d1wmsa_           5 SLFKVILLGDGGVGKSSLMNRYVTNK--FDTQL---FHTIGVEFLNKDLE---VDGHFVTMQIWDTAGQ   65 (174)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSC--CCC-------CCSEEEEEEEEE---ETTEEEEEEEEECCCC
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCC--CCCcc---ccceeeeeeeeeee---ecCceeeEeeecccCc
Confidence            44447899999999999999998754  43211   22333332222221   2456688889999984

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=95.30  E-value=0.005  Score=56.49  Aligned_cols=58  Identities=19%  Similarity=0.140  Sum_probs=41.0

Q ss_pred             CCEEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698           69 EPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA  140 (736)
Q Consensus        69 ~~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~  140 (736)
                      ..+. |.++|+.++|||+|+|+|.+..  |..    ...|.|++.+..-       +..+.+.+.||+|...
T Consensus        11 k~~k-IvlvG~~~vGKTSli~rl~~~~--~~~----~~~t~~~~~~~~~-------~~~~~~~i~D~~g~~~   68 (173)
T d1e0sa_          11 KEMR-ILMLGLDAAGKTTILYKLKLGQ--SVT----TIPTVGFNVETVT-------YKNVKFNVWDVGGQDK   68 (173)
T ss_dssp             CCEE-EEEEEETTSSHHHHHHHTTCCC--CEE----EEEETTEEEEEEE-------ETTEEEEEEEESCCGG
T ss_pred             CeEE-EEEECCCCCCHHHHHHHHhcCC--CCC----ccceeeeeEEEee-------ccceeeEEecCCCcch
Confidence            4566 4589999999999999998654  322    1246777766432       2347889999999643

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.25  E-value=0.0083  Score=54.57  Aligned_cols=58  Identities=22%  Similarity=0.324  Sum_probs=36.8

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      |.|+|..++|||+|+|+|.+..  |.-.   ...|.|.-.+...+   ..++....+.+.||.|..
T Consensus         7 i~lvG~~~vGKTsli~rl~~~~--f~~~---~~~t~~~~~~~~~~---~~~~~~~~~~i~d~~g~~   64 (167)
T d1z0ja1           7 VCLLGDTGVGKSSIMWRFVEDS--FDPN---INPTIGASFMTKTV---QYQNELHKFLIWDTAGLE   64 (167)
T ss_dssp             EEEECCTTSSHHHHHHHHHHSC--CCTT---CCCCCSEEEEEEEE---EETTEEEEEEEEEECCSG
T ss_pred             EEEECCCCcCHHHHHHHHHhCC--CCcc---cccccccccccccc---cccccccceeeeecCCch
Confidence            5688999999999999998765  5322   12344443332211   123445667789999853

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.19  E-value=0.01  Score=53.92  Aligned_cols=56  Identities=25%  Similarity=0.272  Sum_probs=36.6

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCC
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI  138 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~  138 (736)
                      |.|+|..++|||+|+|+|.+..  |.-  .. ..|.|--.+.. +   ..++..+.+.+.|+.|.
T Consensus         6 i~lvG~~~vGKTsLi~r~~~~~--f~~--~~-~~t~~~~~~~~-~---~~~~~~~~l~~~d~~g~   61 (167)
T d1kaoa_           6 VVVLGSGGVGKSALTVQFVTGT--FIE--KY-DPTIEDFYRKE-I---EVDSSPSVLEILDTAGT   61 (167)
T ss_dssp             EEEECCTTSSHHHHHHHHHHSC--CCS--CC-CTTCCEEEEEE-E---EETTEEEEEEEEECCCT
T ss_pred             EEEECCCCcCHHHHHHHHHhCC--CCC--cc-CCceeeeeeee-e---ecCcceEeeccccCCCc
Confidence            7789999999999999999765  422  11 22333211111 1   12466788999999984

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=95.16  E-value=0.011  Score=59.98  Aligned_cols=22  Identities=23%  Similarity=0.311  Sum_probs=19.4

Q ss_pred             EEeeCCCCCChhHHHHHHhCCC
Q 004698           74 VSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      ||++|.+.+|||||.|.|.|..
T Consensus         3 v~lvG~pn~GKStlfn~lt~~~   24 (319)
T d1wxqa1           3 IGVVGKPNVGKSTFFSAATLVD   24 (319)
T ss_dssp             EEEEECTTSSHHHHHHHHHC--
T ss_pred             EeEECCCCCCHHHHHHHHHCCC
Confidence            8999999999999999999864

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=95.07  E-value=0.02  Score=51.91  Aligned_cols=34  Identities=24%  Similarity=0.250  Sum_probs=25.9

Q ss_pred             HHHhhccCCCEEEEEeeCCCCCChhHHHHHHhCCC
Q 004698           61 VAALQLVKEPIGVVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        61 l~~L~~i~~~v~vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      ++++..-+..+- |.++|+.++|||+|+|+|.+..
T Consensus         4 ~~~~~~~~k~~k-I~lvG~~~vGKTsLl~~l~~~~   37 (186)
T d1f6ba_           4 LQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDDR   37 (186)
T ss_dssp             HHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC-
T ss_pred             HHhccccCCCCE-EEEECCCCCCHHHHHHHHhCCC
Confidence            344544455666 5699999999999999999875

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=95.07  E-value=0.0089  Score=55.12  Aligned_cols=58  Identities=19%  Similarity=0.172  Sum_probs=35.4

Q ss_pred             CCEEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698           69 EPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA  140 (736)
Q Consensus        69 ~~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~  140 (736)
                      ..+- |.++|+.++|||+|+|+|.+..  |....    .|.|.-.+...       ...+.+.+.||+|...
T Consensus        16 k~~K-I~lvG~~~vGKTsLi~~l~~~~--~~~~~----~t~~~~~~~~~-------~~~~~~~i~D~~g~~~   73 (182)
T d1moza_          16 KELR-ILILGLDGAGKTTILYRLQIGE--VVTTK----PTIGFNVETLS-------YKNLKLNVWDLGGQTS   73 (182)
T ss_dssp             SCEE-EEEEEETTSSHHHHHHHTCCSE--EEEEC----SSTTCCEEEEE-------ETTEEEEEEEEC----
T ss_pred             ceEE-EEEECCCCCCHHHHHHHHhcCC--CCccc----cccceEEEEEe-------eCCEEEEEEecccccc
Confidence            4455 5599999999999999998664  43221    13443333221       2247889999999654

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=95.05  E-value=0.014  Score=53.17  Aligned_cols=61  Identities=26%  Similarity=0.291  Sum_probs=41.6

Q ss_pred             CEEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        70 ~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      |+-=|.|+|..++|||+|+|++.+..  |.-.  . ..|.|..+-. .+   ..+|..+.+.++||.|..
T Consensus         3 ~~~KivlvG~~~vGKTsli~~~~~~~--f~~~--~-~~T~~~~~~~-~~---~~~~~~~~l~i~d~~g~~   63 (168)
T d1u8za_           3 ALHKVIMVGSGGVGKSALTLQFMYDE--FVED--Y-EPTKADSYRK-KV---VLDGEEVQIDILDTAGQE   63 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSC--CCSC--C-CTTCCEEEEE-EE---EETTEEEEEEEEECCC--
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCC--CCcc--c-CCcccccccc-cc---cccccccccccccccccc
Confidence            44457899999999999999998654  5321  1 2366665422 12   246778999999999953

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.99  E-value=0.0061  Score=56.52  Aligned_cols=60  Identities=18%  Similarity=0.176  Sum_probs=35.0

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceE--Eeecccc-----ccccCCCCceEEEEeecCCC
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGL--WLWSAPL-----KRTALDGTEYNLLLLDSEGI  138 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Gi--w~w~~p~-----~~~~~~g~~~~v~llDteG~  138 (736)
                      |.|+|+.++|||+|+|+|.+..  |.-..   ..|.|+  +.+...+     ......+..+.+-+.||.|.
T Consensus         8 i~ivG~~~vGKTsLi~~l~~~~--~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~   74 (186)
T d2f7sa1           8 LLALGDSGVGKTTFLYRYTDNK--FNPKF---ITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQ   74 (186)
T ss_dssp             EEEESCTTSSHHHHHHHHHCSC--CCCEE---EEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESH
T ss_pred             EEEECCCCcCHHHHHHHHhcCC--CCCcc---CCcccceeeEEEEEEecccccccccccceEEeccccCCcc
Confidence            6789999999999999999765  42211   223332  2221111     11112234467888999984

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.78  E-value=0.014  Score=53.46  Aligned_cols=59  Identities=24%  Similarity=0.284  Sum_probs=38.7

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCccc
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAY  141 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~  141 (736)
                      |.|+|..++|||+|+|++.+..  |.-.  . ..|.|...- ..+   ..++..+.+-+.||.|....
T Consensus         5 ivvvG~~~vGKTsLi~~~~~~~--f~~~--~-~~t~~~~~~-~~~---~~~~~~~~l~i~D~~g~~~~   63 (177)
T d1kmqa_           5 LVIVGDGACGKTCLLIVNSKDQ--FPEV--Y-VPTVFENYV-ADI---EVDGKQVELALWDTAGLEDY   63 (177)
T ss_dssp             EEEEESTTSSHHHHHHHHHHSC--CCSS--C-CCCSEEEEE-EEE---EETTEEEEEEEEEECCSGGG
T ss_pred             EEEECCCCcCHHHHHHHHHhCC--CCCC--c-CCceeeecc-ccc---cccccceeeeccccCccchh
Confidence            4578999999999999998765  5321  1 234443221 111   23566788999999997543

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.77  E-value=0.021  Score=51.77  Aligned_cols=57  Identities=23%  Similarity=0.214  Sum_probs=39.5

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      |.|+|..++|||.|++++.+..  |.-   ....|.|.-.+.. +   ..++..+.+-+.|+.|..
T Consensus         6 ivvvG~~~vGKTsli~r~~~~~--f~~---~~~~t~~~~~~~~-~---~~~~~~~~~~~~d~~g~~   62 (167)
T d1c1ya_           6 LVVLGSGGVGKSALTVQFVQGI--FVE---KYDPTIEDSYRKQ-V---EVDCQQCMLEILDTAGTE   62 (167)
T ss_dssp             EEEECSTTSSHHHHHHHHHHCC--CCC---SCCCCSEEEEEEE-E---ESSSCEEEEEEEEECSSC
T ss_pred             EEEECCCCCCHHHHHHHHHcCC--CCC---ccCCcccccccee-E---EeeeeEEEeccccccCcc
Confidence            6789999999999999998765  532   1233555433322 1   235667889999999964

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.74  E-value=0.014  Score=54.20  Aligned_cols=58  Identities=24%  Similarity=0.282  Sum_probs=38.4

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA  140 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~  140 (736)
                      |.|+|..++|||+|+|+|++..  |.-.  ..| |.|.+.....    ..+|..+.+-+.||.|...
T Consensus        12 i~lvG~~~vGKTsLi~r~~~~~--f~~~--~~~-Ti~~~~~~~~----~~~~~~~~l~i~D~~g~e~   69 (185)
T d2atxa1          12 CVVVGDGAVGKTCLLMSYANDA--FPEE--YVP-TVFDHYAVSV----TVGGKQYLLGLYDTAGQED   69 (185)
T ss_dssp             EEEEECTTSSHHHHHHHHHHSS--CCCS--CCC-SSCCCEEEEE----ESSSCEEEEEEECCCCSSS
T ss_pred             EEEECCCCCCHHHHHHHHhhCC--CCCc--CCC-ceeeeeeEEE----eeCCceEEeecccccccch
Confidence            7899999999999999998654  5321  112 3343322111    1346678889999999643

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=94.73  E-value=0.018  Score=52.44  Aligned_cols=57  Identities=21%  Similarity=0.307  Sum_probs=37.9

Q ss_pred             CCEEEEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           69 EPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        69 ~~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      ..+. |.|+|+.++|||+|+|+|.+..  |...    ..|.|+-.....       ...+.+.+.|+.|..
T Consensus        15 ~~~k-I~vvG~~~vGKSsLi~~l~~~~--~~~~----~~~~~~~~~~i~-------~~~~~~~i~d~~g~~   71 (176)
T d1fzqa_          15 QEVR-ILLLGLDNAGKTTLLKQLASED--ISHI----TPTQGFNIKSVQ-------SQGFKLNVWDIGGQR   71 (176)
T ss_dssp             SCEE-EEEEESTTSSHHHHHHHHCCSC--CEEE----EEETTEEEEEEE-------ETTEEEEEEECSSCG
T ss_pred             CEEE-EEEECCCCCCHHHHHHHHhcCC--CCcc----eeeeeeeEEEec-------cCCeeEeEeeccccc
Confidence            3555 7799999999999999998875  5321    123444332211       124778899999854

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.68  E-value=0.012  Score=53.15  Aligned_cols=58  Identities=21%  Similarity=0.377  Sum_probs=35.6

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      |.|+|..++|||+|+|++++..  |.-..   +.|.|.-.....+.   ..+....+.++|+.|..
T Consensus         5 v~liG~~~vGKTsLl~~~~~~~--~~~~~---~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~   62 (165)
T d1z06a1           5 IIVIGDSNVGKTCLTYRFCAGR--FPDRT---EATIGVDFRERAVD---IDGERIKIQLWDTAGQE   62 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHHSS--CCSSC---CCCCSCCEEEEEEE---ETTEEEEEEEEECCCSH
T ss_pred             EEEECCCCcCHHHHHHHHHhCC--CCCcc---Ccccccccceeeee---eeccceEEEEEeccCch
Confidence            6799999999999999998664  43222   22322211111111   12345678889999853

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=94.57  E-value=0.021  Score=51.73  Aligned_cols=24  Identities=29%  Similarity=0.295  Sum_probs=21.2

Q ss_pred             EEEEeeCCCCCChhHHHHHHhCCC
Q 004698           72 GVVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      .=|.|+|..++|||+|+|+|.+..
T Consensus        16 ~kI~vvG~~~~GKSsLi~rl~~~~   39 (177)
T d1zj6a1          16 HKVIIVGLDNAGKTTILYQFSMNE   39 (177)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTTS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcCC
Confidence            347799999999999999999876

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=94.56  E-value=0.022  Score=53.80  Aligned_cols=26  Identities=23%  Similarity=0.464  Sum_probs=22.5

Q ss_pred             CCEEEEEeeCCCCCChhHHHHHHhCC
Q 004698           69 EPIGVVSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        69 ~~v~vVsv~G~~rtGKS~LlN~l~~~   94 (736)
                      +|-.-|+|+|--.+|||||+|+|+|.
T Consensus         6 ~p~ini~iiGhVd~GKSTL~~~L~~~   31 (205)
T d2qn6a3           6 QPEVNIGVVGHVDHGKTTLVQAITGI   31 (205)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHSC
T ss_pred             CCCeEEEEEEccCCcHHHHHHHHHhh
Confidence            56446999998889999999999985

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.55  E-value=0.016  Score=53.83  Aligned_cols=58  Identities=22%  Similarity=0.260  Sum_probs=39.4

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA  140 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~  140 (736)
                      |.|+|..++|||+|++++.+..  |.-.  . ..|.|... ...+   ..+|..+.+-+.||.|...
T Consensus         6 vvllG~~~vGKTSli~r~~~~~--f~~~--~-~~t~~~~~-~~~~---~~~~~~~~l~i~D~~g~~~   63 (191)
T d2ngra_           6 CVVVGDGAVGKTCLLISYTTNK--FPSE--Y-VPTVFDNY-AVTV---MIGGEPYTLGLFDTAGQED   63 (191)
T ss_dssp             EEEEESTTSSHHHHHHHHHHSC--CCSS--C-CCCSEEEE-EEEE---EETTEEEEEEEEEECCSGG
T ss_pred             EEEECCCCcCHHHHHHHHHhCC--CCCC--c-CCceeeec-ceeE---eeCCceeeeeccccccchh
Confidence            6688999999999999998765  5322  1 23555443 2222   2356678899999999653

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=94.48  E-value=0.052  Score=53.93  Aligned_cols=99  Identities=13%  Similarity=0.213  Sum_probs=59.0

Q ss_pred             CEEEEEeeCCCCCChhHHHHHHhC---CC-------CcccccC-CCCCccceEEeeccccccccCCCCceEEEEeecCCC
Q 004698           70 PIGVVSVCGRARQGKSFILNQLLG---RS-------SGFQVAS-THRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGI  138 (736)
Q Consensus        70 ~v~vVsv~G~~rtGKS~LlN~l~~---~~-------~gF~~~~-~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~  138 (736)
                      +|-=|+|+|..++|||+|+..|+-   ..       .|-.+.. ...-..+||=+-..++...   ..++.+-|+||||.
T Consensus         5 ~iRni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~---~~~~~~n~iDtPG~   81 (276)
T d2bv3a2           5 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCF---WKDHRINIIDAPGH   81 (276)
T ss_dssp             GEEEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEE---ETTEEEEEECCCSS
T ss_pred             hceEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeec---cCCeEEEEecCCch
Confidence            344589999999999999999972   11       1111110 0111234444444333322   23467899999997


Q ss_pred             cccCCCCccchHHHHHhhhccceEEEccCCCCchHHhh
Q 004698          139 DAYDQTGTYSTQIFSLAVLLSSMFIYNQMGGIDESAID  176 (736)
Q Consensus       139 ~~~~~~~~~d~~IFaLa~LLSS~~IyN~~g~i~e~~l~  176 (736)
                      .++-.     ..+.+|.+.=+.++|.+....+..+...
T Consensus        82 ~dF~~-----e~~~~l~~~D~avlVvda~~Gv~~~T~~  114 (276)
T d2bv3a2          82 VDFTI-----EVERSMRVLDGAIVVFDSSQGVEPQSET  114 (276)
T ss_dssp             SSCST-----THHHHHHHCCEEEEEEETTTSSCHHHHH
T ss_pred             hhhHH-----HHHHHHHhhhheEEeccccCCcchhHHH
Confidence            54432     3466888877889999988888765443

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=94.41  E-value=0.0088  Score=53.81  Aligned_cols=22  Identities=18%  Similarity=0.412  Sum_probs=20.4

Q ss_pred             EEEeeCCCCCChhHHHHHHhCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~   94 (736)
                      ||+|+|+.+||||||+|.|+..
T Consensus         4 vi~itG~~GSGKTTL~~~L~~~   25 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIPA   25 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            7999999999999999999864

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=94.29  E-value=0.055  Score=53.51  Aligned_cols=101  Identities=14%  Similarity=0.133  Sum_probs=56.8

Q ss_pred             EEEEeeCCCCCChhHHHHHHhCCCCcccc------cCCCC-----CccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698           72 GVVSVCGRARQGKSFILNQLLGRSSGFQV------ASTHR-----PCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA  140 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~~~~~gF~~------~~~~~-----~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~  140 (736)
                      --|+|+|..++|||+|+..|+....-..-      |+++-     -.-+|+=+-..+....   ..++.+-|+||||..+
T Consensus         3 RNv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~---~~~~~~n~iDtPGh~d   79 (267)
T d2dy1a2           3 RTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLL---FRGHRVFLLDAPGYGD   79 (267)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEE---ETTEEEEEEECCCSGG
T ss_pred             eEEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeeccccc---ccccceeEEccCchhh
Confidence            35899999999999999999733211110      11100     0011221111111110   1235688999999643


Q ss_pred             cCCCCccchHHHHHhhhccceEEEccCCCCchHHhhhhHH
Q 004698          141 YDQTGTYSTQIFSLAVLLSSMFIYNQMGGIDESAIDRLSL  180 (736)
Q Consensus       141 ~~~~~~~d~~IFaLa~LLSS~~IyN~~g~i~e~~l~~L~~  180 (736)
                      +-     ...+-+|.+.=+-++|......+..+....+++
T Consensus        80 F~-----~e~~~al~~~D~avlvvda~~Gv~~~t~~~~~~  114 (267)
T d2dy1a2          80 FV-----GEIRGALEAADAALVAVSAEAGVQVGTERAWTV  114 (267)
T ss_dssp             GH-----HHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH
T ss_pred             hh-----hhhhhhhcccCceEEEeeccCCccchhHHHHHh
Confidence            21     344557777667778888887777766555543

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.05  E-value=0.024  Score=54.97  Aligned_cols=23  Identities=30%  Similarity=0.408  Sum_probs=21.2

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      +++|+||.++|||||||.|.|-.
T Consensus        28 i~~liGpsGsGKSTLl~~i~Gl~   50 (232)
T d2awna2          28 FVVFVGPSGCGKSTLLRMIAGLE   50 (232)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            79999999999999999998864

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.96  E-value=0.0078  Score=54.76  Aligned_cols=29  Identities=24%  Similarity=0.497  Sum_probs=23.4

Q ss_pred             EEEEeeCCCCCChhHHHHHHhCC--CCcccc
Q 004698           72 GVVSVCGRARQGKSFILNQLLGR--SSGFQV  100 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~~~--~~gF~~  100 (736)
                      -||+|+|..+||||||++.|+..  ..|+.+
T Consensus         2 kii~I~G~~gSGKTTli~~l~~~L~~~g~~v   32 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRV   32 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHHhCCCeE
Confidence            38999999999999999999864  234444

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=93.95  E-value=0.018  Score=58.93  Aligned_cols=30  Identities=20%  Similarity=0.081  Sum_probs=25.1

Q ss_pred             hhccCCCEEEEEeeCCCCCChhHHHHHHhC
Q 004698           64 LQLVKEPIGVVSVCGRARQGKSFILNQLLG   93 (736)
Q Consensus        64 L~~i~~~v~vVsv~G~~rtGKS~LlN~l~~   93 (736)
                      |....++.-+|+|.|++++|||+|+|.|..
T Consensus        47 ~~~~~~~~~~IgitG~pGaGKSTLi~~l~~   76 (327)
T d2p67a1          47 IMPYCGNTLRLGVTGTPGAGKSTFLEAFGM   76 (327)
T ss_dssp             HGGGCSCSEEEEEEECTTSCHHHHHHHHHH
T ss_pred             hhhccCCceEEEeeCCCCCCHHHHHHHHHH
Confidence            333456788999999999999999999974

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=93.93  E-value=0.019  Score=55.72  Aligned_cols=36  Identities=22%  Similarity=0.414  Sum_probs=27.6

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeecccc
Q 004698           73 VVSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPL  118 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~  118 (736)
                      +|+|+|+.|+|||||++.|.|-.          +..-.|-+++.|+
T Consensus        27 i~~iiG~nGaGKSTLl~~l~Gl~----------~~~G~I~~~g~~i   62 (231)
T d1l7vc_          27 ILHLVGPNGAGKSTLLARMAGMT----------SGKGSIQFAGQPL   62 (231)
T ss_dssp             EEECBCCTTSSHHHHHHHHHTSC----------CCSSEEEESSSBG
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC----------CCceEEEECCEEC
Confidence            79999999999999999999853          1124466666655

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.77  E-value=0.036  Score=50.99  Aligned_cols=59  Identities=22%  Similarity=0.243  Sum_probs=39.5

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCccc
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAY  141 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~  141 (736)
                      |.++|..++|||.|+++++...  |.-.  . ..|-|.+.... +   ..+|..+.+-+.||.|....
T Consensus         5 ivliG~~~vGKTsli~r~~~~~--f~~~--~-~~t~~~~~~~~-~---~~~~~~~~~~i~D~~g~~~~   63 (179)
T d1m7ba_           5 IVVVGDSQCGKTALLHVFAKDC--FPEN--Y-VPTVFENYTAS-F---EIDTQRIELSLWDTSGSPYY   63 (179)
T ss_dssp             EEEEESTTSSHHHHHHHHHHSC--CCSS--C-CCCSEEEEEEE-E---ECSSCEEEEEEEEECCSGGG
T ss_pred             EEEECCCCcCHHHHHHHHHhCC--CCCc--c-CCceeeccccc-c---cccceEEeeccccccccccc
Confidence            5689999999999999998765  5321  1 12444333322 1   23567788999999996543

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.70  E-value=0.031  Score=50.81  Aligned_cols=57  Identities=23%  Similarity=0.169  Sum_probs=37.9

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      |.++|..++|||+|+|++++..  |.-.  . ..|.|...... +   ..++..+.+-+.||.|..
T Consensus         7 i~lvG~~~vGKTsll~~~~~~~--~~~~--~-~~t~~~~~~~~-~---~~~~~~~~~~i~d~~g~~   63 (169)
T d1x1ra1           7 LVVVGDGGVGKSALTIQFFQKI--FVPD--Y-DPTIEDSYLKH-T---EIDNQWAILDVLDTAGQE   63 (169)
T ss_dssp             EEEECCTTSSHHHHHHHHHHSS--CCTT--C-CTTCCEEEEEE-E---EETTEEEEEEEEECCSCG
T ss_pred             EEEECCCCcCHHHHHHHHHhCC--CCcc--c-Ccceeeccccc-c---cccccccccccccccccc
Confidence            6688999999999999998754  4322  1 12444333211 1   235667889999999964

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=93.69  E-value=0.011  Score=53.72  Aligned_cols=21  Identities=19%  Similarity=0.528  Sum_probs=19.6

Q ss_pred             EEeeCCCCCChhHHHHHHhCC
Q 004698           74 VSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~   94 (736)
                      |.|+||.|+||||||+.|+|.
T Consensus         3 i~I~G~~G~GKSTLl~~i~~~   23 (178)
T d1ye8a1           3 IIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCcHHHHHHHHHHhc
Confidence            789999999999999999874

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=93.46  E-value=0.017  Score=56.55  Aligned_cols=23  Identities=26%  Similarity=0.395  Sum_probs=21.3

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      +|+|+|+.|+|||||++.|+|--
T Consensus        31 ~vaIvG~sGsGKSTLl~ll~gl~   53 (241)
T d2pmka1          31 VIGIVGRSGSGKSTLTKLIQRFY   53 (241)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHHhcC
Confidence            69999999999999999999864

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.42  E-value=0.023  Score=52.13  Aligned_cols=25  Identities=32%  Similarity=0.464  Sum_probs=22.0

Q ss_pred             CCCEEEEEeeCCCCCChhHHHHHHhC
Q 004698           68 KEPIGVVSVCGRARQGKSFILNQLLG   93 (736)
Q Consensus        68 ~~~v~vVsv~G~~rtGKS~LlN~l~~   93 (736)
                      .+|+ ||+|.|+.+||||||.+.|..
T Consensus        20 ~~~~-iIgI~G~~GSGKSTla~~L~~   44 (198)
T d1rz3a_          20 AGRL-VLGIDGLSRSGKTTLANQLSQ   44 (198)
T ss_dssp             SSSE-EEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCE-EEEEECCCCCCHHHHHHHHHH
Confidence            3576 799999999999999999874

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=93.35  E-value=0.018  Score=56.34  Aligned_cols=24  Identities=25%  Similarity=0.325  Sum_probs=21.6

Q ss_pred             EEEEeeCCCCCChhHHHHHHhCCC
Q 004698           72 GVVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      -+|+|+|+.++|||||++.|+|--
T Consensus        29 e~vaivG~sGsGKSTLl~ll~gl~   52 (242)
T d1mv5a_          29 SIIAFAGPSGGGKSTIFSLLERFY   52 (242)
T ss_dssp             EEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhh
Confidence            479999999999999999999863

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=93.34  E-value=0.035  Score=54.09  Aligned_cols=23  Identities=22%  Similarity=0.329  Sum_probs=21.4

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      +++|+||.|+|||||++.|.|-.
T Consensus        34 ~~~liGpsGaGKSTLl~~i~Gl~   56 (239)
T d1v43a3          34 FLVLLGPSGCGKTTTLRMIAGLE   56 (239)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            69999999999999999999864

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.33  E-value=0.037  Score=50.88  Aligned_cols=58  Identities=24%  Similarity=0.202  Sum_probs=38.4

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA  140 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~  140 (736)
                      |.|+|..++|||+|+|+|++..  |.-.  .. .|.|.+.... +   ..++..+.+-+.|+.|-..
T Consensus         8 ivviG~~~vGKTsli~~~~~~~--f~~~--~~-~ti~~~~~~~-~---~~~~~~~~~~~~d~~g~~~   65 (183)
T d1mh1a_           8 CVVVGDGAVGKTCLLISYTTNA--FPGE--YI-PTVFDNYSAN-V---MVDGKPVNLGLWDTAGQED   65 (183)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSS--CCSS--CC-CCSCCEEEEE-E---EETTEEEEEEEECCCCSGG
T ss_pred             EEEECCCCCCHHHHHHHHHhCC--CCcc--cc-cceeeceeee-e---eccCcceEEEeeccccccc
Confidence            7899999999999999999765  5321  11 2444332221 1   2356678888999988643

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=93.28  E-value=0.019  Score=56.04  Aligned_cols=23  Identities=17%  Similarity=0.219  Sum_probs=21.5

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      |++|+||.++|||||+|.|.|-.
T Consensus        30 i~glvG~nGaGKSTLl~~l~G~~   52 (238)
T d1vpla_          30 IFGLIGPNGAGKTTTLRIISTLI   52 (238)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            79999999999999999999874

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.27  E-value=0.019  Score=56.56  Aligned_cols=23  Identities=26%  Similarity=0.283  Sum_probs=21.3

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      +|+|+|+.++|||||++.|+|--
T Consensus        42 ~vaivG~sGsGKSTLl~li~gl~   64 (251)
T d1jj7a_          42 VTALVGPNGSGKSTVAALLQNLY   64 (251)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhccc
Confidence            79999999999999999999864

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=93.25  E-value=0.019  Score=55.71  Aligned_cols=23  Identities=35%  Similarity=0.390  Sum_probs=21.0

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      +++|+|+.|+||||||+.|.|-.
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~gl~   55 (230)
T d1l2ta_          33 FVSIMGPSGSGKSTMLNIIGCLD   55 (230)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCcchhhHhccCCC
Confidence            69999999999999999998853

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.11  E-value=0.027  Score=56.25  Aligned_cols=23  Identities=26%  Similarity=0.530  Sum_probs=21.4

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      +|+|+|+.|+||||||+.|+|-.
T Consensus        64 ~vaivG~nGsGKSTLl~~i~Gl~   86 (281)
T d1r0wa_          64 MLAITGSTGSGKTSLLMLILGEL   86 (281)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhCCC
Confidence            79999999999999999999864

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=93.05  E-value=0.02  Score=54.64  Aligned_cols=22  Identities=23%  Similarity=0.295  Sum_probs=20.2

Q ss_pred             EEEEeeCCCCCChhHHHHHHhC
Q 004698           72 GVVSVCGRARQGKSFILNQLLG   93 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~~   93 (736)
                      .||+|+|+.++|||||++.|+.
T Consensus         1 ~vi~v~G~~GsGKTTLl~~ll~   22 (244)
T d1yrba1           1 MIVVFVGTAGSGKTTLTGEFGR   22 (244)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEEcCCCCcHHHHHHHHHH
Confidence            3899999999999999999973

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=93.04  E-value=0.018  Score=54.57  Aligned_cols=23  Identities=26%  Similarity=0.312  Sum_probs=21.2

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      +++|+||.|+|||||++.|.|..
T Consensus        29 i~~l~G~NGsGKSTLl~~i~gl~   51 (200)
T d1sgwa_          29 VVNFHGPNGIGKTTLLKTISTYL   51 (200)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCChHHHHHHHHhccc
Confidence            68999999999999999999864

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=93.02  E-value=0.086  Score=50.52  Aligned_cols=105  Identities=14%  Similarity=0.169  Sum_probs=57.9

Q ss_pred             CEEEEEeeCCCCCChhHHHHHHhCCCCcccccC------------CCC--------------CccceEEeeccccccccC
Q 004698           70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQVAS------------THR--------------PCTKGLWLWSAPLKRTAL  123 (736)
Q Consensus        70 ~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~~------------~~~--------------~~T~Giw~w~~p~~~~~~  123 (736)
                      ++-=|+|+|--.+|||||+++|+....++.-.+            +..              -...|+-+-...+..   
T Consensus         8 ~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~---   84 (222)
T d1zunb3           8 EMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYF---   84 (222)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEE---
T ss_pred             CcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEEE---
Confidence            444488899999999999999985432221100            000              011122111111100   


Q ss_pred             CCCceEEEEeecCCCcccCCCCccchHHHHHhhhccceEEEccCCCCchHHhhhhHHHH
Q 004698          124 DGTEYNLLLLDSEGIDAYDQTGTYSTQIFSLAVLLSSMFIYNQMGGIDESAIDRLSLVT  182 (736)
Q Consensus       124 ~g~~~~v~llDteG~~~~~~~~~~d~~IFaLa~LLSS~~IyN~~g~i~e~~l~~L~~v~  182 (736)
                      ...+..+.++||||-.++     ....+-+++..=.-++|......+..+..++|.+..
T Consensus        85 ~~~~~~~~iiD~PGH~df-----v~~~~~g~~~aD~ailVvda~~G~~~Qt~e~~~~~~  138 (222)
T d1zunb3          85 STAKRKFIIADTPGHEQY-----TRNMATGASTCDLAIILVDARYGVQTQTRRHSYIAS  138 (222)
T ss_dssp             ECSSEEEEEEECCCSGGG-----HHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHH
T ss_pred             eccceEEEEEeccchhhh-----hhhhccccccCceEEEEeccccCcccchHHHHHHHH
Confidence            112356889999995332     123344555544567788888888888887776543

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=93.00  E-value=0.02  Score=56.39  Aligned_cols=23  Identities=30%  Similarity=0.366  Sum_probs=21.2

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      +|+|+|+.++|||||++.|+|-.
T Consensus        43 ~iaivG~sGsGKSTLl~ll~gl~   65 (253)
T d3b60a1          43 TVALVGRSGSGKSTIASLITRFY   65 (253)
T ss_dssp             EEEEEECTTSSHHHHHHHHTTTT
T ss_pred             EEEEECCCCChHHHHHHHHhccc
Confidence            69999999999999999999864

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=92.95  E-value=0.022  Score=55.59  Aligned_cols=23  Identities=26%  Similarity=0.456  Sum_probs=21.5

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      |++++||.++|||||+|.|.|-.
T Consensus        34 i~~liGpnGaGKSTl~~~i~Gl~   56 (240)
T d1ji0a_          34 IVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            79999999999999999999864

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=92.68  E-value=0.019  Score=55.68  Aligned_cols=23  Identities=22%  Similarity=0.394  Sum_probs=21.5

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      +++|+||.|+|||||++.|.|-.
T Consensus        28 ~~~liGpsGaGKSTll~~l~Gl~   50 (229)
T d3d31a2          28 YFVILGPTGAGKTLFLELIAGFH   50 (229)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Confidence            79999999999999999999864

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=92.67  E-value=0.026  Score=55.09  Aligned_cols=23  Identities=22%  Similarity=0.315  Sum_probs=21.4

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      +++|+||.|+||||||+.|.|-.
T Consensus        31 ~~~liG~sGaGKSTll~~i~gl~   53 (240)
T d1g2912          31 FMILLGPSGCGKTTTLRMIAGLE   53 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            79999999999999999999864

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=92.64  E-value=0.023  Score=51.28  Aligned_cols=25  Identities=28%  Similarity=0.405  Sum_probs=21.5

Q ss_pred             EEEEEeeCCCCCChhHHHHHHhCCC
Q 004698           71 IGVVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        71 v~vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      +-.|.|+|+.|||||||.+.|....
T Consensus         7 ~K~I~i~G~~GsGKTTla~~La~~~   31 (192)
T d1lw7a2           7 AKTVAILGGESSGKSVLVNKLAAVF   31 (192)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHh
Confidence            3468999999999999999998653

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=92.60  E-value=0.02  Score=50.51  Aligned_cols=23  Identities=17%  Similarity=0.358  Sum_probs=19.6

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      ||-|+|+++||||||++.|+...
T Consensus         4 lIii~G~pGsGKTTla~~L~~~~   26 (152)
T d1ly1a_           4 IILTIGCPGSGKSTWAREFIAKN   26 (152)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHHhC
Confidence            56689999999999999987543

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.60  E-value=0.043  Score=50.63  Aligned_cols=52  Identities=23%  Similarity=0.388  Sum_probs=34.4

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA  140 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~  140 (736)
                      |.++|..++|||+|++++-     |.  +...| |.|+-.-.  +.     .+.+.+.+.||.|...
T Consensus         5 ivllG~~~vGKTsll~r~~-----f~--~~~~p-TiG~~~~~--~~-----~~~~~~~~~D~~gq~~   56 (200)
T d1zcba2           5 ILLLGAGESGKSTFLKQMR-----II--HGQDP-TKGIHEYD--FE-----IKNVPFKMVDVGGQRS   56 (200)
T ss_dssp             EEEECSTTSSHHHHHHHHH-----HH--HSCCC-CSSEEEEE--EE-----ETTEEEEEEEECC---
T ss_pred             EEEECCCCCCHHHHHHHHh-----cC--CCCCC-eeeeEEEE--Ee-----eeeeeeeeecccceee
Confidence            6689999999999999982     32  23334 78874432  21     2346788999999743

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=92.57  E-value=0.027  Score=55.47  Aligned_cols=23  Identities=30%  Similarity=0.413  Sum_probs=21.6

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      |++++||.++|||||+|.|.|..
T Consensus        32 i~~liG~nGaGKSTLl~~i~Gl~   54 (254)
T d1g6ha_          32 VTLIIGPNGSGKSTLINVITGFL   54 (254)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Confidence            79999999999999999999874

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=92.47  E-value=0.028  Score=55.40  Aligned_cols=23  Identities=30%  Similarity=0.330  Sum_probs=21.3

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      +|+|+|+.|+|||||++.|.|-.
T Consensus        30 i~~iiG~sGsGKSTLl~~i~Gl~   52 (258)
T d1b0ua_          30 VISIIGSSGSGKSTFLRCINFLE   52 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHHcCc
Confidence            79999999999999999999854

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=92.43  E-value=0.026  Score=55.01  Aligned_cols=23  Identities=22%  Similarity=0.238  Sum_probs=21.3

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      +|+|+|+.|+||||||+.|.|-.
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~Gl~   55 (240)
T d3dhwc1          33 IYGVIGASGAGKSTLIRCVNLLE   55 (240)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHcCCc
Confidence            79999999999999999999864

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=92.42  E-value=0.034  Score=54.69  Aligned_cols=23  Identities=26%  Similarity=0.300  Sum_probs=21.1

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      +|+|+|+.++|||||++.|+|-.
T Consensus        46 ~vaivG~sGsGKSTLl~ll~gl~   68 (255)
T d2hyda1          46 TVAFVGMSGGGKSTLINLIPRFY   68 (255)
T ss_dssp             EEEEECSTTSSHHHHHTTTTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHHhcC
Confidence            68999999999999999999864

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=92.32  E-value=0.043  Score=54.36  Aligned_cols=22  Identities=27%  Similarity=0.404  Sum_probs=20.2

Q ss_pred             EEeeCCCCCChhHHHHHHhCCC
Q 004698           74 VSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      |+|+|.+.+|||||.|.|.+..
T Consensus         5 ~GivG~Pn~GKSTlf~~lt~~~   26 (278)
T d1jala1           5 CGIVGLPNVGKSTLFNALTKAG   26 (278)
T ss_dssp             EEEECCTTSSHHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHHCCC
Confidence            8999999999999999998654

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=92.31  E-value=0.055  Score=50.91  Aligned_cols=102  Identities=17%  Similarity=0.214  Sum_probs=55.6

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCC---Cc--c----cccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcccCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRS---SG--F----QVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAYDQ  143 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~---~g--F----~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~~~~  143 (736)
                      =|+|+|--..|||||+|+|++..   .+  |    ..........+||=+-......   +..+..+-++||+|-.++- 
T Consensus         5 ni~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~---~~~~~~~~~iDtPGh~~f~-   80 (196)
T d1d2ea3           5 NVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEY---STAARHYAHTDCPGHADYV-   80 (196)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEE---ECSSCEEEEEECSSHHHHH-
T ss_pred             EEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEE---EeceeeEEeecCcchHHHH-
Confidence            37899999999999999998521   00  1    0111122234455433322211   1233568889999953221 


Q ss_pred             CCccchHHHHHhhhccceEEEccCCCCchHHhhhhHHHH
Q 004698          144 TGTYSTQIFSLAVLLSSMFIYNQMGGIDESAIDRLSLVT  182 (736)
Q Consensus       144 ~~~~d~~IFaLa~LLSS~~IyN~~g~i~e~~l~~L~~v~  182 (736)
                          ...+-++...=.-++|......+.++..+++.+..
T Consensus        81 ----~~~~~~~~~aD~allVVda~~G~~~QT~~~~~~a~  115 (196)
T d1d2ea3          81 ----KNMITGTAPLDGCILVVAANDGPMPQTREHLLLAR  115 (196)
T ss_dssp             ----HHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHH
T ss_pred             ----HHHHHHHhhcCeEEEEEEcCCCCchhHHHHHHHHH
Confidence                11222332222335666666777777777665543

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=92.26  E-value=0.043  Score=53.37  Aligned_cols=23  Identities=26%  Similarity=0.356  Sum_probs=21.0

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      +++++||.|+||||||+.|.|-.
T Consensus        26 ~~~liGpnGaGKSTll~~i~Gl~   48 (240)
T d2onka1          26 YCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            67899999999999999999864

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.01  E-value=0.034  Score=52.41  Aligned_cols=24  Identities=25%  Similarity=0.509  Sum_probs=20.8

Q ss_pred             CEEEEEeeCCCCCChhHHHHHHhCC
Q 004698           70 PIGVVSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        70 ~v~vVsv~G~~rtGKS~LlN~l~~~   94 (736)
                      |+ ||+|.|+.+||||||.+.|...
T Consensus         2 P~-iIgI~G~~gSGKSTla~~L~~~   25 (213)
T d1uj2a_           2 PF-LIGVSGGTASGKSSVCAKIVQL   25 (213)
T ss_dssp             CE-EEEEECSTTSSHHHHHHHHHHH
T ss_pred             CE-EEEEECCCCCCHHHHHHHHHHH
Confidence            54 6999999999999999998643

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=91.72  E-value=0.04  Score=49.08  Aligned_cols=23  Identities=26%  Similarity=0.289  Sum_probs=20.5

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      +|.|+|++||||||+.+.|....
T Consensus         4 lI~i~G~~GsGKTTva~~L~~~~   26 (176)
T d2bdta1           4 LYIITGPAGVGKSTTCKRLAAQL   26 (176)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHc
Confidence            68899999999999999998654

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.53  E-value=0.035  Score=51.35  Aligned_cols=34  Identities=26%  Similarity=0.504  Sum_probs=24.6

Q ss_pred             EEEeeCCCCCChhHHHHHHhCC-CCccc--ccCCCCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGR-SSGFQ--VASTHRP  106 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~-~~gF~--~~~~~~~  106 (736)
                      +|.|+||.++||++|++.|+.. ..+|.  +.+|++|
T Consensus         5 ~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~v~~TTR~   41 (178)
T d1kgda_           5 TLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRP   41 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSC
T ss_pred             cEEEECCCCCCHHHHHHHHHHhCCcCeeeccccccCC
Confidence            3667999999999999999954 34554  4444443

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.47  E-value=0.03  Score=51.56  Aligned_cols=23  Identities=35%  Similarity=0.420  Sum_probs=20.2

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      +|.|+||.++|||+|++.|....
T Consensus         4 iivl~GpsG~GK~tl~~~L~~~~   26 (182)
T d1znwa1           4 VVVLSGPSAVGKSTVVRCLRERI   26 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            56799999999999999998654

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=91.38  E-value=0.045  Score=49.36  Aligned_cols=21  Identities=24%  Similarity=0.224  Sum_probs=19.4

Q ss_pred             EEEeeCCCCCChhHHHHHHhC
Q 004698           73 VVSVCGRARQGKSFILNQLLG   93 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~   93 (736)
                      ||.|.|+.|+||||+.+.|..
T Consensus         3 iI~i~G~~GsGKsT~~~~L~~   23 (190)
T d1khta_           3 VVVVTGVPGVGSTTSSQLAMD   23 (190)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999999864

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=91.15  E-value=0.074  Score=54.03  Aligned_cols=27  Identities=22%  Similarity=0.155  Sum_probs=24.0

Q ss_pred             cCCCEEEEEeeCCCCCChhHHHHHHhC
Q 004698           67 VKEPIGVVSVCGRARQGKSFILNQLLG   93 (736)
Q Consensus        67 i~~~v~vVsv~G~~rtGKS~LlN~l~~   93 (736)
                      ..++.-+|+|.|++++|||+|++.|..
T Consensus        47 ~~~~~~~igitG~pGaGKSTli~~l~~   73 (323)
T d2qm8a1          47 QTGRAIRVGITGVPGVGKSTTIDALGS   73 (323)
T ss_dssp             GCCCSEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ccCCceEEeeeCCCCCCHHHHHHHHHH
Confidence            456778999999999999999999874

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=91.07  E-value=0.029  Score=54.75  Aligned_cols=23  Identities=17%  Similarity=0.342  Sum_probs=21.3

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      +|+|+||.|+||||||+.|.|-.
T Consensus        33 ~~~iiG~sGsGKSTll~~i~gl~   55 (242)
T d1oxxk2          33 RFGILGPSGAGKTTFMRIIAGLD   55 (242)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHHcCc
Confidence            79999999999999999999853

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=90.75  E-value=0.039  Score=51.02  Aligned_cols=28  Identities=36%  Similarity=0.613  Sum_probs=22.7

Q ss_pred             CEEEEEeeCCCCCChhHHHHHHhCCCCcccc
Q 004698           70 PIGVVSVCGRARQGKSFILNQLLGRSSGFQV  100 (736)
Q Consensus        70 ~v~vVsv~G~~rtGKS~LlN~l~~~~~gF~~  100 (736)
                      |+ ||+|+|+.+|||||+.+.|-  .-||.+
T Consensus         3 p~-IIgitG~~gSGKstva~~l~--~~g~~~   30 (191)
T d1uf9a_           3 PI-IIGITGNIGSGKSTVAALLR--SWGYPV   30 (191)
T ss_dssp             CE-EEEEEECTTSCHHHHHHHHH--HTTCCE
T ss_pred             CE-EEEEECCCCCCHHHHHHHHH--HCCCeE
Confidence            44 69999999999999999984  346654

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=90.42  E-value=0.046  Score=49.02  Aligned_cols=28  Identities=21%  Similarity=0.382  Sum_probs=23.7

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCCCcccc
Q 004698           73 VVSVCGRARQGKSFILNQLLGRSSGFQV  100 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~  100 (736)
                      .|.|+|+.|+||||+.+.|.....||.+
T Consensus         7 ~I~i~G~~GsGKTT~~~~La~~l~~~~~   34 (174)
T d1y63a_           7 NILITGTPGTGKTSMAEMIAAELDGFQH   34 (174)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHSTTEEE
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHhCCCcE
Confidence            5889999999999999999877656554

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.07  E-value=0.075  Score=49.21  Aligned_cols=22  Identities=23%  Similarity=0.490  Sum_probs=20.0

Q ss_pred             EEEEeeCCCCCChhHHHHHHhC
Q 004698           72 GVVSVCGRARQGKSFILNQLLG   93 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~~   93 (736)
                      .||.++|.++||||||.+.|..
T Consensus         3 ~li~l~GlpgsGKSTla~~L~~   24 (213)
T d1bifa1           3 TLIVMVGLPARGKTYISKKLTR   24 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999999984

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.71  E-value=0.073  Score=47.66  Aligned_cols=20  Identities=20%  Similarity=0.313  Sum_probs=18.4

Q ss_pred             EEeeCCCCCChhHHHHHHhC
Q 004698           74 VSVCGRARQGKSFILNQLLG   93 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~   93 (736)
                      |.|.|+.|||||+|+..++.
T Consensus         4 v~ItG~~GtGKTtl~~~i~~   23 (189)
T d2i3ba1           4 VFLTGPPGVGKTTLIHKASE   23 (189)
T ss_dssp             EEEESCCSSCHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            77889999999999999874

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=89.51  E-value=0.083  Score=47.26  Aligned_cols=23  Identities=26%  Similarity=0.379  Sum_probs=20.6

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      ||.+.|+.+|||||+.+.|....
T Consensus         6 iI~l~G~~GsGKSTia~~La~~l   28 (176)
T d1zp6a1           6 ILLLSGHPGSGKSTIAEALANLP   28 (176)
T ss_dssp             EEEEEECTTSCHHHHHHHHHTCS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            68899999999999999998653

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=89.36  E-value=0.079  Score=47.16  Aligned_cols=21  Identities=19%  Similarity=0.357  Sum_probs=18.4

Q ss_pred             EEeeCCCCCChhHHHHHHhCC
Q 004698           74 VSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~   94 (736)
                      |.|+|+.||||||+.+.|..+
T Consensus         7 I~i~G~pGsGKTTia~~La~~   27 (173)
T d1rkba_           7 ILLTGTPGVGKTTLGKELASK   27 (173)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            568899999999999999744

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.35  E-value=0.6  Score=47.34  Aligned_cols=107  Identities=20%  Similarity=0.294  Sum_probs=60.2

Q ss_pred             CCCEEEEEeeCCCCCChhHHHHHHhCCC----------CcccccCCCCCccceEEeeccccc-------------cccCC
Q 004698           68 KEPIGVVSVCGRARQGKSFILNQLLGRS----------SGFQVASTHRPCTKGLWLWSAPLK-------------RTALD  124 (736)
Q Consensus        68 ~~~v~vVsv~G~~rtGKS~LlN~l~~~~----------~gF~~~~~~~~~T~Giw~w~~p~~-------------~~~~~  124 (736)
                      ...|-=|+|+|..++|||+|+..|+...          .++.... ..-..+||=|-+.+..             ....+
T Consensus        14 ~~~IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~-~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~   92 (341)
T d1n0ua2          14 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTR-KDEQERGITIKSTAISLYSEMSDEDVKEIKQKTD   92 (341)
T ss_dssp             GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC-------------------CCCBCCCEEEEEEECCHHHHHHCSSCCC
T ss_pred             cccCcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccc-hhHHhcCceEeCCEEEEEeccCcccccchhcccc
Confidence            4566559999999999999999997211          0111000 0001122222111111             11234


Q ss_pred             CCceEEEEeecCCCcccCCCCccchHHHHHhhhccceEEEccCCCCchHHhhhhHH
Q 004698          125 GTEYNLLLLDSEGIDAYDQTGTYSTQIFSLAVLLSSMFIYNQMGGIDESAIDRLSL  180 (736)
Q Consensus       125 g~~~~v~llDteG~~~~~~~~~~d~~IFaLa~LLSS~~IyN~~g~i~e~~l~~L~~  180 (736)
                      +..+.+=|+||||-.++-     +..+.+|.+.=.-++|.+....+..+....+..
T Consensus        93 ~~~~~inliDtPGh~dF~-----~ev~~al~~~D~allVVda~eGv~~qT~~~~~~  143 (341)
T d1n0ua2          93 GNSFLINLIDSPGHVDFS-----SEVTAALRVTDGALVVVDTIEGVCVQTETVLRQ  143 (341)
T ss_dssp             SSEEEEEEECCCCCCSSC-----HHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHH
T ss_pred             ccceEEEEEcCCCcHHHH-----HHHHHHHhhcCceEEEEecccCcchhHHHHHHH
Confidence            566778899999964321     345566666556678888888777666555443

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=89.34  E-value=0.12  Score=50.08  Aligned_cols=20  Identities=25%  Similarity=0.315  Sum_probs=18.2

Q ss_pred             EEeeCCCCCChhHHHHHHhC
Q 004698           74 VSVCGRARQGKSFILNQLLG   93 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~   93 (736)
                      |+|+|--.+|||+|+.+|+.
T Consensus        27 i~iiGHVD~GKSTL~~~Ll~   46 (245)
T d1r5ba3          27 IVFIGHVDAGKSTLGGNILF   46 (245)
T ss_dssp             EEEEECGGGTHHHHHHHHHH
T ss_pred             EEEEeeCCCCHHHHHHHHHH
Confidence            88899999999999999963

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.94  E-value=0.11  Score=48.00  Aligned_cols=28  Identities=21%  Similarity=0.302  Sum_probs=24.0

Q ss_pred             CCCEEEEEeeCCCCCChhHHHHHHhCCC
Q 004698           68 KEPIGVVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        68 ~~~v~vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      +.++.||.|+||++|||||+...|...-
T Consensus         5 ~~~~~iI~i~GppGSGKsT~a~~La~~~   32 (196)
T d1ukza_           5 PDQVSVIFVLGGPGAGKGTQCEKLVKDY   32 (196)
T ss_dssp             TTTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            3467889999999999999999997653

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=88.90  E-value=0.1  Score=48.06  Aligned_cols=23  Identities=26%  Similarity=0.287  Sum_probs=20.7

Q ss_pred             EEEEeeCCCCCChhHHHHHHhCC
Q 004698           72 GVVSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~~~   94 (736)
                      .||.|+||++|||||+...|...
T Consensus         7 ~iI~i~G~pGSGKsT~a~~La~~   29 (194)
T d1qf9a_           7 NVVFVLGGPGSGKGTQCANIVRD   29 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            58999999999999999999754

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=88.66  E-value=0.094  Score=49.19  Aligned_cols=27  Identities=26%  Similarity=0.363  Sum_probs=22.0

Q ss_pred             EEEEeeCCCCCChhHHHHHHhCCCCcccc
Q 004698           72 GVVSVCGRARQGKSFILNQLLGRSSGFQV  100 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~~~~~gF~~  100 (736)
                      -||+|.|..+|||||+.+.|-.  -||.+
T Consensus         3 ~iIgITG~igSGKStv~~~l~~--~G~~v   29 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFTD--LGVPL   29 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT--TTCCE
T ss_pred             EEEEEECCCCCCHHHHHHHHHH--CCCeE
Confidence            4799999999999999998752  35654

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.40  E-value=0.1  Score=51.94  Aligned_cols=22  Identities=27%  Similarity=0.309  Sum_probs=19.4

Q ss_pred             EEEEeeCCCCCChhHHHHHHhC
Q 004698           72 GVVSVCGRARQGKSFILNQLLG   93 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~~   93 (736)
                      -||+|.|++|||||||.+.|..
T Consensus        28 ~iIGi~G~qGSGKSTl~~~l~~   49 (286)
T d1odfa_          28 LFIFFSGPQGSGKSFTSIQIYN   49 (286)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEeECCCCCCHHHHHHHHHH
Confidence            4799999999999999988753

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=88.31  E-value=0.09  Score=49.67  Aligned_cols=22  Identities=27%  Similarity=0.363  Sum_probs=19.6

Q ss_pred             EEEeeCCCCCChhHHHHHHhCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~   94 (736)
                      +|.|+||.++|||+|+|.|+..
T Consensus         4 livi~GPSG~GK~tl~~~L~~~   25 (205)
T d1s96a_           4 LYIVSAPSGAGKSSLIQALLKT   25 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            4669999999999999999864

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=88.28  E-value=0.11  Score=46.11  Aligned_cols=23  Identities=26%  Similarity=0.268  Sum_probs=20.3

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      ||.|.|+.+|||||+.+.|....
T Consensus         5 iI~l~G~~GsGKsTva~~L~~~l   27 (178)
T d1qhxa_           5 MIILNGGSSAGKSGIVRCLQSVL   27 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHc
Confidence            67899999999999999998653

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.17  E-value=0.078  Score=48.97  Aligned_cols=26  Identities=27%  Similarity=0.538  Sum_probs=20.8

Q ss_pred             EEeeCCCCCChhHHHHHHhCCC-Cccc
Q 004698           74 VSVCGRARQGKSFILNQLLGRS-SGFQ   99 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~-~gF~   99 (736)
                      |.|+||.++||++|++.|+... .+|.
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~~~~~~~   30 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAEYPDSFG   30 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHCTTTEE
T ss_pred             EEEECCCCCCHHHHHHHHHHhCCccee
Confidence            5689999999999999998653 3453

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=88.16  E-value=0.12  Score=45.90  Aligned_cols=23  Identities=22%  Similarity=0.158  Sum_probs=20.3

Q ss_pred             EEEEeeCCCCCChhHHHHHHhCC
Q 004698           72 GVVSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~~~   94 (736)
                      .||.++|+.|+||||+...|...
T Consensus         7 ~~I~l~G~~GsGKTTia~~La~~   29 (183)
T d1m8pa3           7 FTIFLTGYMNSGKDAIARALQVT   29 (183)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            57999999999999999998743

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=87.14  E-value=0.11  Score=47.24  Aligned_cols=49  Identities=20%  Similarity=0.228  Sum_probs=31.6

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCc
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGID  139 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~  139 (736)
                      |.++|..++|||+|+++|....  |+        |.|+=.       ...++..+.+-+.||-|..
T Consensus         5 ivllG~~~vGKTsl~~r~~~~~--~~--------t~~~~~-------~~~~~~~~~~~i~D~~Gq~   53 (195)
T d1svsa1           5 LLLLGAGESGKSTIVKQMKIIH--EA--------GTGIVE-------THFTFKDLHFKMFDVGGQR   53 (195)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH--SC--------CCSEEE-------EEEEETTEEEEEEEECCSG
T ss_pred             EEEECCCCCCHHHHHHHHhhCC--CC--------CccEEE-------EEEEeeeeeeeeecccccc
Confidence            6789999999999999987432  21        223211       0112344677788888854

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=86.72  E-value=0.22  Score=47.80  Aligned_cols=27  Identities=15%  Similarity=0.372  Sum_probs=22.4

Q ss_pred             CCCEEEEEeeCCCCCChhHHHHHHhCCC
Q 004698           68 KEPIGVVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        68 ~~~v~vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      +.|.+ |-+.||+|||||+|...|.+..
T Consensus        30 ~~P~~-ilL~GpPGtGKT~la~~la~~~   56 (273)
T d1gvnb_          30 ESPTA-FLLGGQPGSGKTSLRSAIFEET   56 (273)
T ss_dssp             SSCEE-EEEECCTTSCTHHHHHHHHHHT
T ss_pred             CCCEE-EEEECCCCCCHHHHHHHHHHHh
Confidence            45776 5589999999999999998653

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=86.39  E-value=0.14  Score=51.45  Aligned_cols=21  Identities=29%  Similarity=0.344  Sum_probs=19.1

Q ss_pred             EEEEeeCCCCCChhHHHHHHh
Q 004698           72 GVVSVCGRARQGKSFILNQLL   92 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~   92 (736)
                      -||+|+|+.++||||+.+.|.
T Consensus        81 ~iIGIaG~sgSGKSTla~~L~  101 (308)
T d1sq5a_          81 YIISIAGSVAVGKSTTARVLQ  101 (308)
T ss_dssp             EEEEEEECTTSSHHHHHHHHH
T ss_pred             EEEEEeCCCCCCCcHHHHHHH
Confidence            479999999999999998875

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=86.12  E-value=0.11  Score=49.44  Aligned_cols=22  Identities=23%  Similarity=0.234  Sum_probs=15.2

Q ss_pred             EEEEEeeCCCCCChhHHHHHHh
Q 004698           71 IGVVSVCGRARQGKSFILNQLL   92 (736)
Q Consensus        71 v~vVsv~G~~rtGKS~LlN~l~   92 (736)
                      =.||.++||+|+||+|.+=.|.
T Consensus        12 p~vi~lvGptGvGKTTTiAKLA   33 (211)
T d1j8yf2          12 PYVIMLVGVQGTGKATTAGKLA   33 (211)
T ss_dssp             SEEEEEECSCCC----HHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHH
Confidence            3579999999999999988876

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=85.97  E-value=0.16  Score=48.02  Aligned_cols=21  Identities=19%  Similarity=0.213  Sum_probs=19.4

Q ss_pred             EEEEeeCCCCCChhHHHHHHh
Q 004698           72 GVVSVCGRARQGKSFILNQLL   92 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~   92 (736)
                      .||.++||+|+||||.+-.|.
T Consensus        11 ~vi~lvGp~GvGKTTTiaKLA   31 (207)
T d1ls1a2          11 NLWFLVGLQGSGKTTTAAKLA   31 (207)
T ss_dssp             EEEEEECCTTTTHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            689999999999999999886

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=85.96  E-value=0.14  Score=46.95  Aligned_cols=25  Identities=20%  Similarity=0.392  Sum_probs=20.6

Q ss_pred             CCEEEEEeeCCCCCChhHHHHHHhCC
Q 004698           69 EPIGVVSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        69 ~~v~vVsv~G~~rtGKS~LlN~l~~~   94 (736)
                      .|+. |.|+||.||||||+...|..+
T Consensus         2 ~Pm~-I~i~GppGsGKsT~a~~La~~   26 (189)
T d1zaka1           2 DPLK-VMISGAPASGKGTQCELIKTK   26 (189)
T ss_dssp             CSCC-EEEEESTTSSHHHHHHHHHHH
T ss_pred             CCeE-EEEECCCCCCHHHHHHHHHHH
Confidence            4665 559999999999999998754

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=85.92  E-value=0.18  Score=44.74  Aligned_cols=23  Identities=17%  Similarity=0.296  Sum_probs=19.6

Q ss_pred             EEEEeeCCCCCChhHHHHHHhCC
Q 004698           72 GVVSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~~~   94 (736)
                      .||-|+|+.||||||+...|...
T Consensus         7 ~iivl~G~~GsGKsT~a~~La~~   29 (171)
T d1knqa_           7 HIYVLMGVSGSGKSAVASEVAHQ   29 (171)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            45667899999999999998754

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=85.83  E-value=0.18  Score=46.81  Aligned_cols=23  Identities=17%  Similarity=0.313  Sum_probs=20.7

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      ||+|.||+||||||+...|..+-
T Consensus         5 iI~I~GppGSGKgT~ak~La~~~   27 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAEAL   27 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            79999999999999999998653

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=85.81  E-value=0.18  Score=47.30  Aligned_cols=26  Identities=31%  Similarity=0.497  Sum_probs=21.8

Q ss_pred             EEEeeCCCCCChhHHHHHHhCCCCcccc
Q 004698           73 VVSVCGRARQGKSFILNQLLGRSSGFQV  100 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~~~gF~~  100 (736)
                      ||+|+|..+|||||..+.|-.  -||.+
T Consensus         5 iIgitG~igSGKStv~~~l~~--~G~~v   30 (208)
T d1vhta_           5 IVALTGGIGSGKSTVANAFAD--LGINV   30 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH--TTCEE
T ss_pred             EEEEECCCcCCHHHHHHHHHH--CCCcE
Confidence            799999999999999998752  36654

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=85.72  E-value=0.15  Score=46.78  Aligned_cols=27  Identities=26%  Similarity=0.383  Sum_probs=22.7

Q ss_pred             CCCEEEEEeeCCCCCChhHHHHHHhCCC
Q 004698           68 KEPIGVVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        68 ~~~v~vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      +.|+ +|+|.|+-|+||||+++.|....
T Consensus         7 ~kp~-~I~ieG~~GsGKTTl~~~L~~~l   33 (197)
T d2vp4a1           7 TQPF-TVLIEGNIGSGKTTYLNHFEKYK   33 (197)
T ss_dssp             CCCE-EEEEECSTTSCHHHHHHTTGGGT
T ss_pred             CCce-EEEEECCCCCCHHHHHHHHHHHh
Confidence            3565 68899999999999999997653

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=85.56  E-value=0.2  Score=47.73  Aligned_cols=29  Identities=31%  Similarity=0.555  Sum_probs=24.9

Q ss_pred             CCEEEEEeeCCCCCChhHHHHHHhCCCCc
Q 004698           69 EPIGVVSVCGRARQGKSFILNQLLGRSSG   97 (736)
Q Consensus        69 ~~v~vVsv~G~~rtGKS~LlN~l~~~~~g   97 (736)
                      .||-|.-|.|--|+|||||||+|+....|
T Consensus         1 ~~iPv~iitGFLGaGKTTll~~lL~~~~~   29 (222)
T d1nija1           1 NPIAVTLLTGFLGAGKTTLLRHILNEQHG   29 (222)
T ss_dssp             CCEEEEEEEESSSSSCHHHHHHHHHSCCC
T ss_pred             CCCCEEEEeeCCCCCHHHHHHHHHhcCCC
Confidence            47889999999999999999999975434

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.39  E-value=0.27  Score=44.65  Aligned_cols=53  Identities=17%  Similarity=0.130  Sum_probs=37.2

Q ss_pred             EEeeCCCCCChhHHHHHHhCCCCcccccCCCCCccceEEeeccccccccCCCCceEEEEeecCCCcc
Q 004698           74 VSVCGRARQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDA  140 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~~~gF~~~~~~~~~T~Giw~w~~p~~~~~~~g~~~~v~llDteG~~~  140 (736)
                      |-++|..++|||+|++++....  |..-     .|.|+-+-...       ...+.+-+.||.|...
T Consensus         5 iv~lG~~~vGKTsll~r~~~~~--~~~~-----pTiG~~~~~~~-------~~~~~~~~~d~~g~~~   57 (200)
T d2bcjq2           5 LLLLGTGESGKSTFIKQMRIIH--GSGV-----PTTGIIEYPFD-------LQSVIFRMVDVGGQRS   57 (200)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHT--SSCC-----CCCSCEEEEEE-------CSSCEEEEEECCCSTT
T ss_pred             EEEECCCCCCHHHHHHHHhCCC--CCCC-----ceeeEEEEEEe-------ccceeeeecccccccc
Confidence            6789999999999999997554  5321     36776543322       2346788899999643

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.13  E-value=0.21  Score=45.73  Aligned_cols=22  Identities=27%  Similarity=0.348  Sum_probs=19.9

Q ss_pred             EEEeeCCCCCChhHHHHHHhCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~   94 (736)
                      ||.|+||++|||||+...|...
T Consensus         3 iI~i~GppGSGKsT~a~~La~~   24 (194)
T d1teva_           3 VVFVLGGPGAGKGTQCARIVEK   24 (194)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999998754

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=84.76  E-value=0.2  Score=45.00  Aligned_cols=23  Identities=26%  Similarity=0.239  Sum_probs=20.1

Q ss_pred             EEEEeeCCCCCChhHHHHHHhCC
Q 004698           72 GVVSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~~~   94 (736)
                      -||.|.|+.|+||||+.+.|...
T Consensus         2 kiivi~G~~GsGKTT~~~~La~~   24 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKEI   24 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            47889999999999999999643

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.73  E-value=0.14  Score=46.64  Aligned_cols=22  Identities=23%  Similarity=0.184  Sum_probs=19.2

Q ss_pred             EEEeeCCCCCChhHHHHHHhCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~   94 (736)
                      ||-++|+.|||||||.+.|...
T Consensus        21 vI~L~G~pGSGKTTiAk~La~~   42 (195)
T d1x6va3          21 TVWLTGLSGAGKTTVSMALEEY   42 (195)
T ss_dssp             EEEEESSCHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5779999999999999999643

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=84.65  E-value=0.22  Score=47.40  Aligned_cols=29  Identities=14%  Similarity=0.174  Sum_probs=23.6

Q ss_pred             EEEEeeCCCCCChhHHHHHHhCCCCccccc
Q 004698           72 GVVSVCGRARQGKSFILNQLLGRSSGFQVA  101 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~~~~~gF~~~  101 (736)
                      -+|+|.|..+|||||..|.|.... ||.+-
T Consensus         2 ~iIgiTG~igSGKsTva~~l~e~~-g~~~i   30 (241)
T d1deka_           2 KLIFLSGVKRSGKDTTADFIMSNY-SAVKY   30 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHS-CEEEC
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhC-CCeEE
Confidence            479999999999999999997542 56543

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=84.54  E-value=0.18  Score=51.07  Aligned_cols=35  Identities=23%  Similarity=0.407  Sum_probs=26.6

Q ss_pred             CHHHHHHhhcc---CCCEEEEEeeCCCCCChhHHHHHHhCC
Q 004698           57 DPEAVAALQLV---KEPIGVVSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        57 ~~eAl~~L~~i---~~~v~vVsv~G~~rtGKS~LlN~l~~~   94 (736)
                      .+++..+|...   ..+   |-|+|+++||||+|||.|++.
T Consensus       152 ~~~~~~~l~~~v~~~~n---ili~G~tgSGKTT~l~al~~~  189 (323)
T d1g6oa_         152 KEQAISAIKDGIAIGKN---VIVCGGTGSGKTTYIKSIMEF  189 (323)
T ss_dssp             HHHHHHHHHHHHHHTCC---EEEEESTTSSHHHHHHHHGGG
T ss_pred             HHHHHHHHHHHHHhCCC---EEEEeeccccchHHHHHHhhh
Confidence            36667777542   344   567999999999999999964

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=84.34  E-value=0.16  Score=50.56  Aligned_cols=21  Identities=19%  Similarity=0.328  Sum_probs=19.8

Q ss_pred             EEeeCCCCCChhHHHHHHhCC
Q 004698           74 VSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~   94 (736)
                      |+|+|.+.+|||||.|.|.+.
T Consensus        13 iGivG~Pn~GKSTlfnalT~~   33 (296)
T d1ni3a1          13 TGIVGMPNVGKSTFFRAITKS   33 (296)
T ss_dssp             EEEEECSSSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHCC
Confidence            899999999999999999964

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.05  E-value=0.25  Score=44.90  Aligned_cols=22  Identities=32%  Similarity=0.341  Sum_probs=19.2

Q ss_pred             EEEEeeCCCCCChhHHHHHHhC
Q 004698           72 GVVSVCGRARQGKSFILNQLLG   93 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~~   93 (736)
                      .||-++|+.+|||||+...|+.
T Consensus        15 ~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          15 EVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTG
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            3677899999999999999864

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=83.77  E-value=0.24  Score=44.60  Aligned_cols=21  Identities=14%  Similarity=0.271  Sum_probs=18.5

Q ss_pred             EEeeCCCCCChhHHHHHHhCC
Q 004698           74 VSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~   94 (736)
                      |.|+|+++|||||+...|...
T Consensus         3 I~i~G~pGSGKsT~a~~La~~   23 (182)
T d1zina1           3 LVLMGLPGAGKGTQAEKIVAA   23 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            669999999999999998654

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=83.25  E-value=0.24  Score=42.99  Aligned_cols=21  Identities=33%  Similarity=0.344  Sum_probs=18.2

Q ss_pred             EEeeCCCCCChhHHHHHHhCC
Q 004698           74 VSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~   94 (736)
                      |-++|+.|+||||+...|...
T Consensus         5 I~l~G~~GsGKSTvak~La~~   25 (169)
T d1kaga_           5 IFLVGPMGAGKSTIGRQLAQQ   25 (169)
T ss_dssp             EEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            667799999999999998754

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=82.95  E-value=0.4  Score=49.78  Aligned_cols=42  Identities=26%  Similarity=0.369  Sum_probs=35.6

Q ss_pred             ceeeCHHHHHHhhc-cCCCEEEEEeeCCCCCChhHHHHHHhCC
Q 004698           53 KFRMDPEAVAALQL-VKEPIGVVSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        53 ~l~l~~eAl~~L~~-i~~~v~vVsv~G~~rtGKS~LlN~l~~~   94 (736)
                      .|-+.+..++.|.. +..|=++|-|.||++|||||+|..++..
T Consensus       139 ~LG~~~~~~~~l~~l~~~~~GliLvtGpTGSGKSTTl~~~l~~  181 (401)
T d1p9ra_         139 SLGMTAHNHDNFRRLIKRPHGIILVTGPTGSGKSTTLYAGLQE  181 (401)
T ss_dssp             GSCCCHHHHHHHHHHHTSSSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred             hhcccHHHHHHHHHHHhhhhceEEEEcCCCCCccHHHHHHhhh
Confidence            46677888888865 4688999999999999999999999853

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=82.60  E-value=0.28  Score=45.03  Aligned_cols=24  Identities=17%  Similarity=0.310  Sum_probs=20.8

Q ss_pred             EEEEeeCCCCCChhHHHHHHhCCC
Q 004698           72 GVVSVCGRARQGKSFILNQLLGRS   95 (736)
Q Consensus        72 ~vVsv~G~~rtGKS~LlN~l~~~~   95 (736)
                      .||-|+||+||||||+...|....
T Consensus         9 ~iI~l~G~pGSGKsT~a~~La~~~   32 (194)
T d3adka_           9 KIIFVVGGPGSGKGTQCEKIVQKY   32 (194)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHh
Confidence            468899999999999999997653

>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Prefoldin
family: Prefoldin
domain: Prefoldin beta subunit
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=82.54  E-value=8.6  Score=31.47  Aligned_cols=33  Identities=12%  Similarity=0.157  Sum_probs=16.3

Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 004698          513 RSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYL  545 (736)
Q Consensus       513 ~~~L~~k~es~e~e~~~lk~~Le~~e~~~~e~~  545 (736)
                      ...++..+..+...+..+..++.+.+..+.+..
T Consensus        10 ~q~lq~el~~~~~q~~~le~q~~E~~~vl~eL~   42 (107)
T d1fxka_          10 FQQLQQQAQAISVQKQTVEMQINETQKALEELS   42 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444455555555555555555555444443

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=82.50  E-value=0.29  Score=46.22  Aligned_cols=38  Identities=13%  Similarity=0.154  Sum_probs=26.7

Q ss_pred             CHHHHHHhhcc----CCCEEEEEeeCCCCCChhHHHHHHhCC
Q 004698           57 DPEAVAALQLV----KEPIGVVSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        57 ~~eAl~~L~~i----~~~v~vVsv~G~~rtGKS~LlN~l~~~   94 (736)
                      |..|...+..+    ......+-|.|+.|+|||+|++.+...
T Consensus        18 N~~a~~~~~~~~~~~~~~~n~l~l~G~~G~GKTHLl~A~~~~   59 (213)
T d1l8qa2          18 NRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNE   59 (213)
T ss_dssp             THHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcCCCCCcEEEECCCCCcHHHHHHHHHHH
Confidence            66666666553    222333569999999999999998643

>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: FCH domain
domain: Formin-binding protein 1, FNBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.42  E-value=20  Score=33.45  Aligned_cols=113  Identities=12%  Similarity=0.142  Sum_probs=58.6

Q ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 004698          516 LMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEIS  595 (736)
Q Consensus       516 L~~k~es~e~e~~~lk~~Le~~e~~~~e~~k~~e~~In~lkk~~e~~e~~~~~Le~k~~sl~~r~~~L~~~le~lk~e~~  595 (736)
                      .+.....+......+.+.+......+....+.|.....++    +.+.........+..........+...++....+..
T Consensus       109 ~~~~~K~~~~~~~k~~k~~~~~~~~l~k~k~~Y~~~~~e~----e~~~~~~~~~~~~~~~~~~~~~K~~~k~~~~~~~~~  184 (288)
T d2efla1         109 LKQERKSNFHDGRKAQQHIETCWKQLESSKRRFERDCKEA----DRAQQYFEKMDADINVTKADVEKARQQAQIRHQMAE  184 (288)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhhccccccchHHHHHHHHHHHHHHHHHH
Confidence            3334444455555555555555555555555555554444    222223333333333334455556666666666666


Q ss_pred             HHHHHHHHHHHHhhHHHHH-HHHHHHHHhhhhHHHHHH
Q 004698          596 DWKRKYDQVLTKQKAMEDQ-VCSEIEVLKSRSTAAEAR  632 (736)
Q Consensus       596 e~~~~yee~~~~~~~~~~~-~~~~i~~L~~k~~~~E~~  632 (736)
                      ..+..|...+...++.... |...+..+-+.+..+|+.
T Consensus       185 ~a~~~Y~~~v~~~n~~~~~~~~~~~~~~~~~~q~~e~~  222 (288)
T d2efla1         185 DSKADYSSILQKFNHEQHEYYHTHIPNIFQKIQEMEER  222 (288)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777777766666655543 455555444444444433

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=82.20  E-value=0.3  Score=44.27  Aligned_cols=21  Identities=14%  Similarity=0.344  Sum_probs=18.8

Q ss_pred             EEeeCCCCCChhHHHHHHhCC
Q 004698           74 VSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~   94 (736)
                      |.|+|+++|||||+...|...
T Consensus         3 I~i~G~pGSGKsT~a~~La~~   23 (182)
T d1s3ga1           3 IVLMGLPGAGKGTQADRIVEK   23 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            678999999999999999855

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=81.99  E-value=0.22  Score=49.49  Aligned_cols=21  Identities=24%  Similarity=0.374  Sum_probs=16.2

Q ss_pred             EEEeeCCCCCChhHHHHHHhC
Q 004698           73 VVSVCGRARQGKSFILNQLLG   93 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~   93 (736)
                      ||+|+|+.++||||+.+.|..
T Consensus         6 IIgIaG~SGSGKTTva~~l~~   26 (288)
T d1a7ja_           6 IISVTGSSGAGTSTVKHTFDQ   26 (288)
T ss_dssp             EEEEESCC---CCTHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            799999999999999998754

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=81.46  E-value=0.69  Score=43.74  Aligned_cols=38  Identities=26%  Similarity=0.371  Sum_probs=27.9

Q ss_pred             eeeCHHHHHHhhccCCCEEEEEeeCCCCCChhHHHHHHhC
Q 004698           54 FRMDPEAVAALQLVKEPIGVVSVCGRARQGKSFILNQLLG   93 (736)
Q Consensus        54 l~l~~eAl~~L~~i~~~v~vVsv~G~~rtGKS~LlN~l~~   93 (736)
                      |.=-++.++.|.....+  +|.|.|+.|+|||+|++.++.
T Consensus        14 f~GR~~el~~l~~~~~~--~i~i~G~~G~GKTsLl~~~~~   51 (283)
T d2fnaa2          14 FFDREKEIEKLKGLRAP--ITLVLGLRRTGKSSIIKIGIN   51 (283)
T ss_dssp             SCCCHHHHHHHHHTCSS--EEEEEESTTSSHHHHHHHHHH
T ss_pred             CCChHHHHHHHHhccCC--EEEEEcCCCCcHHHHHHHHHH
Confidence            33345566777665555  466889999999999999864

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.29  E-value=0.34  Score=44.59  Aligned_cols=21  Identities=33%  Similarity=0.544  Sum_probs=18.5

Q ss_pred             EEeeCCCCCChhHHHHHHhCC
Q 004698           74 VSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        74 Vsv~G~~rtGKS~LlN~l~~~   94 (736)
                      |.|+||.++||++|++.|+..
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~   23 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQE   23 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            559999999999999999754

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=81.10  E-value=0.36  Score=46.10  Aligned_cols=24  Identities=21%  Similarity=0.217  Sum_probs=20.2

Q ss_pred             EEEEEeeCCCCCChhHHHHHHhCC
Q 004698           71 IGVVSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        71 v~vVsv~G~~rtGKS~LlN~l~~~   94 (736)
                      ..++-+.||+|||||++++.++..
T Consensus        46 ~~~l~l~GppGtGKT~l~~~l~~~   69 (287)
T d1w5sa2          46 NMIYGSIGRVGIGKTTLAKFTVKR   69 (287)
T ss_dssp             EEEEECTTCCSSSHHHHHHHHHHH
T ss_pred             ceEEEeECCCCCCHHHHHHHHHHH
Confidence            445677899999999999999854

>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Prefoldin
family: Prefoldin
domain: Prefoldin beta subunit
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=81.04  E-value=5  Score=33.02  Aligned_cols=39  Identities=15%  Similarity=0.136  Sum_probs=29.3

Q ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004698          619 IEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVA  657 (736)
Q Consensus       619 i~~L~~k~~~~E~~~~~~~~q~~~~~~E~~e~~~ky~~~  657 (736)
                      +.+|..+...++.++..+.++...+.+++.+|+.+|+.+
T Consensus        67 ~~~l~~~~e~l~~~i~~l~~q~~~l~~~l~~~~~~l~~~  105 (107)
T d1fxka_          67 TEELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQEA  105 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            335556666777788888888888888888888887653

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=80.95  E-value=0.43  Score=43.46  Aligned_cols=24  Identities=21%  Similarity=0.232  Sum_probs=19.6

Q ss_pred             CEEEEEeeCCCCCChhHHHHHHhCC
Q 004698           70 PIGVVSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        70 ~v~vVsv~G~~rtGKS~LlN~l~~~   94 (736)
                      .+-|| ++||++|||||+...|..+
T Consensus         3 ~~rii-l~G~pGSGKsT~a~~La~~   26 (190)
T d1ak2a1           3 GVRAV-LLGPPGAGKGTQAPKLAKN   26 (190)
T ss_dssp             CCEEE-EECCTTSSHHHHHHHHHHH
T ss_pred             ccEEE-EECCCCCCHHHHHHHHHHH
Confidence            34555 7899999999999999854

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=80.17  E-value=0.41  Score=44.50  Aligned_cols=22  Identities=23%  Similarity=0.327  Sum_probs=19.9

Q ss_pred             EEEeeCCCCCChhHHHHHHhCC
Q 004698           73 VVSVCGRARQGKSFILNQLLGR   94 (736)
Q Consensus        73 vVsv~G~~rtGKS~LlN~l~~~   94 (736)
                      +|+|-||.|+||||+...|...
T Consensus         5 ~IaIdGp~GsGKgT~ak~La~~   26 (223)
T d1q3ta_           5 QIAIDGPASSGKSTVAKIIAKD   26 (223)
T ss_dssp             EEEEECSSCSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999754