Citrus Sinensis ID: 004699

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-----
MDSFEPDGNGARDGNGAPDSLPPPPPVIPPDFVPTRVEEQEPAKKKVVRVPISRRGLGSRGQRISLLTNHFKVNVTNVEGHFYHYSVSVSYEDGRPVDGKGAGRKVIDRVQETYNAELDGKDFAYDGEKSLFTVGPLPRNKLEFTVVLEDISSNRNNGNASPDAHGSPNGNDRKRLRRPYRSKTFKVEISFAAKIPIQAIANALRGQESENSQEAFRVLDIILRQHAAKQGCLLVRQSFFHNDPKNFADVGGGVLGCRGFHSSFRTTQGGLSLNIDVSTTMIIQPGPVVDFLIANQNVRDPFSIDWAKAKRTLKNLRIKTITSNQEYKITGLSEKLCKEQMFSLKQKNVKDDDGEVQELEITVYDYFVNNRNIDLRYSGDLPCINVGKPKRPTYIPLELCELVSLQRYTKALTNLQRASLVEKSRQKPQERMSVLSNALKLSKYDNEPMLRSCGISISTNFAQVEGRVLPAPRLKFGNGEDFSPRNGRWNFNNKKLVQPTKIERWAVVNFSARCDIRSLVRDLIKCGEMKGILIDQPFDVFEESPQFRRSSPVVRVEKMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPMRVNDQYLTNVLLKINAKLGGLNSLLAVEHSPSIPIVSKVPTIILGMDVSHGSPGHSDIPSIAAVVSSRHWPLISRYRAAVRTQSPKVEMIDSLFKKVSDTEDEGIIRLFYCLTYLRWEVVVIGYLYC
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEEEEEccccEEEEEEEEEEccccccccccHHHHHHHHHHHHHHHHHcccccEEEEccccEEcccccccccccEEEEEcccccccccccccccccccccccccccccccccccEEEEEEEEEEcccHHHHHHHHcccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccEEEEEccEEEEEEEcccEEEEEEccEEEEEcccHHHHHHHHHccccccccHHHHHHHccccccEEEEEEccccEEEEcccccccccEEEEcccccccccccccccEEEEHHHHHHHHcccEEcccccccEEEccccccccEEEccEEEEccccHHHccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccccHHHcccccEEEccEEEEEEEEcccccEEccccccccccccccccccccccccccccEEEEEEEccHHHHHHHHHHHHHHHHHccccccccccEEccccccccccHHHHHHHHHHHHHHHccccccEEEEEEccccccccHHHHHHHHccccccEEEEEccccccHHHHHHHHHHHHHHcccccccccccccccccccccccEEEEEEEccccccccccccEEEEEEEEcccccccEEEEEEEEcccccHHHHHHHHHHHccHHHHHHHHHHHHHcccccEEEEEEEEc
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEEEEcccccEEEEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHccccccccccccEEcccccccccEEEEEEEEcccccccccccccccccccccccccccccccccEEEEEEEEEEEEccHHHHHHHHcccccccHHHHHHHHHHHHHHcccccccEEcccccccccccccccccccEEEEccccccccccccccEEEEEcccHHEccccHHHHHHHHHHccccccHHHHHHHHHHHcccEEEEEccccEEEEEccccccccccEcccccccccccccccccEEEEHHHHHHHHccEEEEccccccccccccccccccccHHHHHHHcHHHHHHHccHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHcccEEccccEEEEEEEcccccEEEccccEEcccccEEEccccEEEccEEEEEEEEEEccccccHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHcccccEEEEEEEcccccccEEEEEEEEcccEEEEEEEcEccccccHHHHHHEEEEEEEEEcccccEEcccccccccccccccEEEEEcccccccccccccccEEEEEEccccccccHEEEEEEcccHHHHHHHHHHccccccccccHHHHHHHHHEEEEcccccccccc
mdsfepdgngardgngapdslpppppvippdfvptrveeqepakkkvvrvpisrrglgsrgqrISLLTNHFKVNVTNVEGHFYHYSVSvsyedgrpvdgkgagrKVIDRVQETYnaeldgkdfaydgekslftvgplprnklEFTVVLEDIssnrnngnaspdahgspngndrkrlrrpyrsktFKVEISFAAKIPIQAIANALrgqesensqEAFRVLDIILRQHAAKQGCLLVRqsffhndpknfadvgggvlgcrgfhssfrttqgglslnidvsttmiiqpgpvVDFLIAnqnvrdpfsiDWAKAKRTLKNLRIKTITSNQEYKITGLSEKLCKEQMFSLKqknvkdddgevqELEITVYDYFVnnrnidlrysgdlpcinvgkpkrptyiplelcELVSLQRYTKALTNLQRASLveksrqkpQERMSVLSNAlklskydnepmlrscgisistnfaqvegrvlpaprlkfgngedfsprngrwnfnnkklvqptkIERWAVVNFSARCDIRSLVRDLIKcgemkgilidqpfdvfeespqfrrsspvvRVEKMFDEIqsklpgapqfllcllperknsdlygpwkrknladfgivtqcmapmrvnDQYLTNVLLKINAKLgglnsllavehspsipivskvptiilgmdvshgspghsdipsIAAVVSSRHWPLISRYRAavrtqspkveMIDSLFKKVSDTEDEGIIRLFYCLTYLRWEVVVIGYLYC
MDSFEPDGNGARdgngapdslppppPVIPPDFVPTRveeqepakkkvvrvpisrrglgsrgqrislltNHFKVNVTNVEGHFYHYSVSvsyedgrpvdgkgagrkvIDRVQETYnaeldgkdfayDGEKSLFtvgplprnKLEFTVVLEDISsnrnngnaspdahgspngndrkrlrrPYRSKTFKVEISFAAKIPIQAIANAlrgqesenSQEAFRVLDIILRQHAAKQGCLLVRQSFFHNDPKNFADVGGGVLGCRGFHSSFRTTQGGLSLNIDVSTTMIIQPGPVVDFLIANQNVRDPFSIDWAKAKrtlknlriktitsnqeykitglSEKLCKEQMFSLKqknvkdddgeVQELEITVYDYFVNNRNIDlrysgdlpcinvgkPKRPTYIPLELCELVSLQRYTKALTNlqraslveksrqkpqermSVLSnalklskydnePMLRSCGISISTNFAQVEGRVlpaprlkfgngedfsprngrwnfnnkklvqptkieRWAVVNFSARCDIRSLVRDLIKCGEMKGILIDQPFDVFEESPQFRRSSPVVRVEKMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPMRVNDQYLTNVLLKINAKLGGLNSLLAVEHSPSIPIVSKVPTIILGMDVSHGSPGHSDIPSIAAVVSSRHWPLISRYRaavrtqspkvemIDSLfkkvsdtedeGIIRLFYCLTYLRWEVVVIGYLYC
MDSFEPDGNGARDGNGApdslpppppvippdfvpTRVEEQEPAKKKVVRVPISRRGLGSRGQRISLLTNHFKVNVTNVEGHFYHYSVSVSYEDGRPVDGKGAGRKVIDRVQETYNAELDGKDFAYDGEKSLFTVGPLPRNKLEFTVVLEDISSNRNNGNASPDAHGSPNGNDRKRLRRPYRSKTFKVEISFAAKIPIQAIANALRGQESENSQEAFRVLDIILRQHAAKQGCLLVRQSFFHNDPKNFADVGGGVLGCRGFHSSFRTTQGGLSLNIDVSTTMIIQPGPVVDFLIANQNVRDPFSIDWAKAKRTLKNLRIKTITSNQEYKITGLSEKLCKEQMFSLKQKNVKDDDGEVQELEITVYDYFVNNRNIDLRYSGDLPCINVGKPKRPTYIPLELCELVSLQRYTKALTNLQRASLVEKSRQKPQERMSVLSNALKLSKYDNEPMLRSCGISISTNFAQVEGRVLPAPRLKFGNGEDFSPRNGRWNFNNKKLVQPTKIERWAVVNFSARCDIRSLVRDLIKCGEMKGILIDQPFDVFEESPQFRRSSPVVRVEKMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPMRVNDQYLTNVLLKINAKLGGLNSLLAVEHSPSIPIVSKVPTIILGMDVSHGSPGHSDIPSIAAVVSSRHWPLISRYRAAVRTQSPKVEMIDSLFKKVSDTEDEGIIRLFYCLTYLRWEVVVIGYLYC
***********************************************************RGQRISLLTNHFKVNVTNVEGHFYHYSVSVSYEDGRPVDGKGAGRKVIDRVQETYNAELDGKDFAYDGEKSLFTVGPLPRNKLEFTVVLE**********************************TFKVEISFAAKIPIQAIANAL*********EAFRVLDIILRQHAAKQGCLLVRQSFFHNDPKNFADVGGGVLGCRGFHSSFRTTQGGLSLNIDVSTTMIIQPGPVVDFLIANQNVRDPFSIDWAKAKRTLKNLRIKTITSNQEYKITGLSEKLCKEQMFSLK********GEVQELEITVYDYFVNNRNIDLRYSGDLPCINVGKPKRPTYIPLELCELVSLQRYTKALTNLQ********************************MLRSCGISISTNFAQVEGRVLPAPRLKFGNGEDFSPRNGRWNFNNKKLVQPTKIERWAVVNFSARCDIRSLVRDLIKCGEMKGILIDQPFDVFEE*********VVRVEKMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPMRVNDQYLTNVLLKINAKLGGLNSLLAVEHSPSIPIVSKVPTIILGMDVSHG***HSDIPSIAAVVSSRHWPLISRYRAAVRTQSPKVEMIDSLFKKVSDTEDEGIIRLFYCLTYLRWEVVVIGYLY*
**********************************************************SRGQRISLLTNHFKVNVTNVEGHFYHYSVSVSYEDGRPVDGKGAGRKVIDRVQETYNAELDGKDFAYDGEKSLFTVGPLPRNKLEFTVVLEDISSNRN***************DR*RLRRPYRSKTFKVEISFAAKIPIQAIANALRGQESENSQEAFRVLDIILRQHAAKQGCLLVRQSFFHNDP*****VGGGVLGCRGFHSSFRTTQGGLSLNIDVSTTMIIQPGPVVDFLIANQNVRDPFSIDWAKAKRTLKNLRIKTITSNQEYKITGLSEKLCKEQMFSLK**NVKDDDGEVQELEITVYDYFVNNRNIDLRYSGDLPCINVGKPKRPTYIPLELCELVSLQRY****************RQKPQERMSVLSNALKLSKYDNEPMLRSCGISISTNFAQVEGRVLPAPRLKFGNGEDFSPRNGRWNFNNKKLVQPTKIERWAVVNFSARCDIRSLVRDLIKCGEMKGILIDQPFDVFEESPQFRRSSPVVRVEKMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPMRVNDQYLTNVLLKINAKLGGLNSLLAVEHSPSIPIVSKVPTIILGMDVSHGSP**SDIPSIAAVVSSRHWPLISRYRAAVRTQSPKVEMIDSLFKKVSDTEDEGIIRLFYCLTYLRWEVVVIGYLYC
***********RDGNGAPDSLPPPPPVIPPDFVPTRVEEQEPAKKKVVRVPISRRGLGSRGQRISLLTNHFKVNVTNVEGHFYHYSVSVSYEDGRPVDGKGAGRKVIDRVQETYNAELDGKDFAYDGEKSLFTVGPLPRNKLEFTVVLEDISSNRNNGNASPDAHGSPNGNDRKRLRRPYRSKTFKVEISFAAKIPIQAIANAL********QEAFRVLDIILRQHAAKQGCLLVRQSFFHNDPKNFADVGGGVLGCRGFHSSFRTTQGGLSLNIDVSTTMIIQPGPVVDFLIANQNVRDPFSIDWAKAKRTLKNLRIKTITSNQEYKITGLSEKLCKEQMFSLKQKNVKDDDGEVQELEITVYDYFVNNRNIDLRYSGDLPCINVGKPKRPTYIPLELCELVSLQRYTKALTNLQRASL************SVLSNALKLSKYDNEPMLRSCGISISTNFAQVEGRVLPAPRLKFGNGEDFSPRNGRWNFNNKKLVQPTKIERWAVVNFSARCDIRSLVRDLIKCGEMKGILIDQPFDVFEESPQFRRSSPVVRVEKMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPMRVNDQYLTNVLLKINAKLGGLNSLLAVEHSPSIPIVSKVPTIILGMDVSHGSPGHSDIPSIAAVVSSRHWPLISRYRAAVRTQSPKVEMIDSLFKKVSDTEDEGIIRLFYCLTYLRWEVVVIGYLYC
************************************************RVPISRR**GSRGQRISLLTNHFKVNVTNVEGHFYHYSVSVSYEDGRPVDGKGAGRKVIDRVQETYNAELDGKDFAYDGEKSLFTVGPLPRNKLEFTVVLEDI*****************************RSKTFKVEISFAAKIPIQAIANALRGQESENSQEAFRVLDIILRQHAAKQGCLLVRQSFFHNDPKNFADVGGGVLGCRGFHSSFRTTQGGLSLNIDVSTTMIIQPGPVVDFLIANQNVRDPFSIDWAKAKRTLKNLRIKTITSNQEYKITGLSEKLCKEQMFSLKQKN*******VQELEITVYDYFVNNRNIDLRYSGDLPCINVGKPKRPTYIPLELCELVSLQRYTKALTNLQRASLVEKSRQKPQERMSVLSNALKLSKYDNEPMLRSCGISISTNFAQVEGRVLPAPRLKFGNGEDFSPRNGRWNFNNKKLVQPTKIERWAVVNFSARCDIRSLVRDLIKCGEMKGILIDQPFDVFEESPQFRRSSPVVRVEKMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPMRVNDQYLTNVLLKINAKLGGLNSLLAVEHSPSIPIVSKVPTIILGMDVSHGS*GHSDIPSIAAVVSSRHWPLISRYRAAVRTQSPKVEMIDSLFKKVSDTEDEGIIRLFYCLTYLRWEVVVIGYLYC
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MDSFEPDGNGARDGNGAPDSLPPPPPVIPPDFVPTRVEEQEPAKKKVVRVPISRRGLGSRGQRISLLTNHFKVNVTNVEGHFYHYSVSVSYEDGRPVDGKGAGRKVIDRVQETYNAELDGKDFAYDGEKSLFTVGPLPRNKLEFTVVLEDISSNRNNGNASPDAHGSPNGNDRKRLRRPYRSKTFKVEISFAAKIPIQAIANALRGQESENSQEAFRVLDIILRQHAAKQGCLLVRQSFFHNDPKNFADVGGGVLGCRGFHSSFRTTQGGLSLNIDVSTTMIIQPGPVVDFLIANQNVRDPFSIDWAKAKRTLKNLRIKTITSNQEYKITGLSEKLCKEQMFSLKQKNVKDDDGEVQELEITVYDYFVNNRNIDLRYSGDLPCINVGKPKRPTYIPLELCELVSLQRYTKALTNLQRASLVEKSRQKPQERMSVLSNALKLSKYDNEPMLRSCGISISTNFAQVEGRVLPAPRLKFGNGEDFSPRNGRWNFNNKKLVQPTKIERWAVVNFSARCDIRSLVRDLIKCGEMKGILIDQPFDVFEESPQFRRSSPVVRVEKMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPMRVNDQYLTNVLLKINAKLGGLNSLLAVEHSPSIPIVSKVPTIILGMDVSHGSPGHSDIPSIAAVVSSRHWPLISRYRAAVRTQSPKVEMIDSLFKKVSDTEDEGIIRLFYCLTYLRWEVVVIGYLYC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query735 2.2.26 [Sep-21-2011]
Q9ZVD5 924 Protein argonaute 4 OS=Ar yes no 0.967 0.769 0.705 0.0
Q0JF58 911 Protein argonaute 4B OS=O yes no 0.929 0.749 0.696 0.0
Q9SDG8 904 Protein argonaute 4A OS=O no no 0.902 0.733 0.710 0.0
Q84VQ0 896 Protein argonaute 9 OS=Ar no no 0.936 0.767 0.657 0.0
Q6YSJ5 883 Protein argonaute 16 OS=O no no 0.899 0.748 0.610 0.0
Q3E984 850 Protein argonaute 8 OS=Ar no no 0.892 0.771 0.595 0.0
Q5NBN9 889 Protein argonaute 15 OS=O no no 0.915 0.757 0.574 0.0
O48771 878 Protein argonaute 6 OS=Ar no no 0.899 0.752 0.538 0.0
Q6EU14 1082 Protein argonaute 1A OS=O no no 0.865 0.587 0.344 5e-97
Q9SJK3 997 Protein argonaute 5 OS=Ar no no 0.848 0.625 0.350 4e-94
>sp|Q9ZVD5|AGO4_ARATH Protein argonaute 4 OS=Arabidopsis thaliana GN=AGO4 PE=1 SV=2 Back     alignment and function desciption
 Score = 1044 bits (2699), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 510/723 (70%), Positives = 614/723 (84%), Gaps = 12/723 (1%)

Query: 1   MDSFEPDGNGA-------RDGNGAPDSLPPPPPVIPPDFVPTRVEEQEPAKKKVVRVPIS 53
           MDS   +GNGA        +G+G  ++LPPPPPVIPP+  P RV+ +   KK  VRVP++
Sbjct: 1   MDS--TNGNGADLESANGANGSGVTEALPPPPPVIPPNVEPVRVKTELAEKKGPVRVPMA 58

Query: 54  RRGLGSRGQRISLLTNHFKVNVTNVEGHFYHYSVSVSYEDGRPVDGKGAGRKVIDRVQET 113
           R+G G+RGQ+I LLTNHFKV+V N++GHF+HYSV++ Y+DGRPV+ KG GRK++D+V +T
Sbjct: 59  RKGFGTRGQKIPLLTNHFKVDVANLQGHFFHYSVALFYDDGRPVEQKGVGRKILDKVHQT 118

Query: 114 YNAELDGKDFAYDGEKSLFTVGPLPRNKLEFTVVLEDISSNRNNGNASPDAHGSPNGNDR 173
           Y+++LDGK+FAYDGEK+LFT G LP NK++F+VVLE++S+ R NGN SP+ + SP+  DR
Sbjct: 119 YHSDLDGKEFAYDGEKTLFTYGALPSNKMDFSVVLEEVSATRANGNGSPNGNESPSDGDR 178

Query: 174 KRLRRPYRSKTFKVEISFAAKIPIQAIANALRGQESENSQEAFRVLDIILRQHAAKQGCL 233
           KRLRRP RSK F+VEIS+AAKIP+QA+ANA+RGQESENSQEA RVLDIILRQHAA+QGCL
Sbjct: 179 KRLRRPNRSKNFRVEISYAAKIPLQALANAMRGQESENSQEAIRVLDIILRQHAARQGCL 238

Query: 234 LVRQSFFHNDPKNFADVGGGVLGCRGFHSSFRTTQGGLSLNIDVSTTMIIQPGPVVDFLI 293
           LVRQSFFHNDP N   VGG +LGCRGFHSSFRTTQGG+SLN+DV+TTMII+PGPVVDFLI
Sbjct: 239 LVRQSFFHNDPTNCEPVGGNILGCRGFHSSFRTTQGGMSLNMDVTTTMIIKPGPVVDFLI 298

Query: 294 ANQNVRDPFSIDWAKAKRTLKNLRIKTITSNQEYKITGLSEKLCKEQMFSLKQKNVKDDD 353
           ANQN RDP+SIDW+KAKRTLKNLR+K   S QE+KITGLS+K C+EQ F LK++N  +++
Sbjct: 299 ANQNARDPYSIDWSKAKRTLKNLRVKVSPSGQEFKITGLSDKPCREQTFELKKRN-PNEN 357

Query: 354 GEVQELEITVYDYFVNNRNIDLRYSGDLPCINVGKPKRPTYIPLELCELVSLQRYTKALT 413
           GE +  E+TV DYF + R+IDL+YS DLPCINVGKPKRPTYIPLELC LV LQRYTKALT
Sbjct: 358 GEFETTEVTVADYFRDTRHIDLQYSADLPCINVGKPKRPTYIPLELCALVPLQRYTKALT 417

Query: 414 NLQRASLVEKSRQKPQERMSVLSNALKLSKYDNEPMLRSCGISISTNFAQVEGRVLPAPR 473
             QR++LVEKSRQKPQERM+VLS ALK+S YD EP+LRSCGISIS+NF QVEGRVLPAP+
Sbjct: 418 TFQRSALVEKSRQKPQERMTVLSKALKVSNYDAEPLLRSCGISISSNFTQVEGRVLPAPK 477

Query: 474 LKFGNGEDFSPRNGRWNFNNKKLVQPTKIERWAVVNFSARCDIRSLVRDLIKCGEMKGIL 533
           LK G G +  PRNGRWNFNNK+ V+PTKI+RW VVNFSARC++R +V DLIK G  KGI 
Sbjct: 478 LKMGCGSETFPRNGRWNFNNKEFVEPTKIQRWVVVNFSARCNVRQVVDDLIKIGGSKGIE 537

Query: 534 IDQPFDVFEESPQFRRSSPVVRVEKMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRK 593
           I  PF VFEE  QFRR+ P++RVE MF +IQSKLPG PQF+LC+LP++KNSDLYGPWK+K
Sbjct: 538 IASPFQVFEEGNQFRRAPPMIRVENMFKDIQSKLPGVPQFILCVLPDKKNSDLYGPWKKK 597

Query: 594 NLADFGIVTQCMAPMRV-NDQYLTNVLLKINAKLGGLNSLLAVEHSPSIPIVSKVPTIIL 652
           NL +FGIVTQCMAP R  NDQYLTN+LLKINAKLGGLNS+L+VE +P+  ++SKVPTIIL
Sbjct: 598 NLTEFGIVTQCMAPTRQPNDQYLTNLLLKINAKLGGLNSMLSVERTPAFTVISKVPTIIL 657

Query: 653 GMDVSHGSPGHSDIPSIAAVVSSRHWPLISRYRAAVRTQSPKVEMIDSLFKKVSDTEDEG 712
           GMDVSHGSPG SD+PSIAAVVSSR WPLIS+YRA+VRTQ  K EMI+SL KK + TED+G
Sbjct: 658 GMDVSHGSPGQSDVPSIAAVVSSREWPLISKYRASVRTQPSKAEMIESLVKK-NGTEDDG 716

Query: 713 IIR 715
           II+
Sbjct: 717 IIK 719
Involved in transcriptional gene silencing (TGS). Component of the RISC complex that associate with the small interfering RNA (siRNA) pathway involved in direct cytosine methylation at endogenous DNA repeats. Forms a AGO4/NRPE1/siRNA complex in cajal body, facilitating its function in RNA-directed gene silencing of target loci. Required for CpNpG and asymmetric DNA methylation as well as histone H3 'Lys-9' methylation (H3K9me) at SUP and SN1 loci. May be not required for CpG methylation. Required for the production and maintenance of retrotransposon SN1 and Copia and ribosomal 5S 25 nucleotide siRNAs specialized in gene silencing at chromatin level. Involved in de novo methylation of FWA gene and required for the maintenance of RNA-directed DNA methylation (RdDM) triggered by inverted repeat transgenes. Interacts with miRNA miR390 and miR172, targeting respectively TAS3 and AP2 mRNAs, and mediates cleavage of miRNA targets. Associates mainly with small RNAs of 24 nucleotide in length and preferentially recruits small RNAs with a 5' terminal adenosine. Targeted by the turnip yellows virus (TuYV) protein P0 (via F-box-like domain) for probable proteasome degradation and thereby inactivating AGO4 function in RNA silencing. Required for resistance to the bacterial pathogen P.syringae. Works independently of the RdDM pathway in mediating resistance to P.syringae. RdDM is involved in viral genome methylation as an epigenetic defense against geminiviruses.
Arabidopsis thaliana (taxid: 3702)
>sp|Q0JF58|AGO4B_ORYSJ Protein argonaute 4B OS=Oryza sativa subsp. japonica GN=AGO4B PE=2 SV=1 Back     alignment and function description
>sp|Q9SDG8|AGO4A_ORYSJ Protein argonaute 4A OS=Oryza sativa subsp. japonica GN=AGO4A PE=2 SV=1 Back     alignment and function description
>sp|Q84VQ0|AGO9_ARATH Protein argonaute 9 OS=Arabidopsis thaliana GN=AGO9 PE=1 SV=2 Back     alignment and function description
>sp|Q6YSJ5|AGO16_ORYSJ Protein argonaute 16 OS=Oryza sativa subsp. japonica GN=AGO16 PE=2 SV=2 Back     alignment and function description
>sp|Q3E984|AGO8_ARATH Protein argonaute 8 OS=Arabidopsis thaliana GN=AGO8 PE=3 SV=1 Back     alignment and function description
>sp|Q5NBN9|AGO15_ORYSJ Protein argonaute 15 OS=Oryza sativa subsp. japonica GN=AGO15 PE=2 SV=2 Back     alignment and function description
>sp|O48771|AGO6_ARATH Protein argonaute 6 OS=Arabidopsis thaliana GN=AGO6 PE=2 SV=2 Back     alignment and function description
>sp|Q6EU14|AGO1A_ORYSJ Protein argonaute 1A OS=Oryza sativa subsp. japonica GN=AGO1A PE=2 SV=1 Back     alignment and function description
>sp|Q9SJK3|AGO5_ARATH Protein argonaute 5 OS=Arabidopsis thaliana GN=AGO5 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query735
255573685 921 eukaryotic translation initiation factor 0.965 0.770 0.837 0.0
225436053 913 PREDICTED: protein argonaute 4 [Vitis vi 0.963 0.775 0.819 0.0
449463869 915 PREDICTED: protein argonaute 4-like [Cuc 0.965 0.775 0.818 0.0
268376309 933 argonaute 4-like protein [Pelargonium x 0.961 0.757 0.829 0.0
449516890 915 PREDICTED: LOW QUALITY PROTEIN: protein 0.965 0.775 0.818 0.0
409127957 909 AGO4A [Solanum lycopersicum] 0.927 0.750 0.8 0.0
84688912 905 AGO4-2, partial [Nicotiana benthamiana] 0.945 0.767 0.796 0.0
409127959 913 AGO4B [Solanum lycopersicum] 0.926 0.745 0.797 0.0
356554251 906 PREDICTED: protein argonaute 4-like [Gly 0.912 0.740 0.811 0.0
84688910 912 AGO4-1, partial [Nicotiana benthamiana] 0.929 0.748 0.797 0.0
>gi|255573685|ref|XP_002527764.1| eukaryotic translation initiation factor 2c, putative [Ricinus communis] gi|223532851|gb|EEF34625.1| eukaryotic translation initiation factor 2c, putative [Ricinus communis] Back     alignment and taxonomy information
 Score = 1215 bits (3143), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 604/721 (83%), Positives = 651/721 (90%), Gaps = 11/721 (1%)

Query: 1   MDSFEPDGNGARDGNG------APDSLPPPPPVIPPDFVPTRVEEQEPAKKKVVRVPISR 54
           MDSFEPDGNG R+GNG      + + LPPPPPV+PPD VP R E  EP KKKVVRVPI+R
Sbjct: 1   MDSFEPDGNGLREGNGIHEGNGSQEGLPPPPPVVPPDVVPMRAEP-EPVKKKVVRVPIAR 59

Query: 55  RGLGSRGQRISLLTNHFKVNVTNVEGHFYHYSVSVSYEDGRPVDGKGAGRKVIDRVQETY 114
           RGLGS+GQ+ISLLTNHFKVNV  V+ +F+HY VS+SYEDGRPVDGKG GRKVIDRV ETY
Sbjct: 60  RGLGSKGQKISLLTNHFKVNVNKVDDYFFHYCVSLSYEDGRPVDGKGVGRKVIDRVHETY 119

Query: 115 NAELDGKDFAYDGEKSLFTVGPLPRNKLEFTVVLEDISSNRNNGNASPDAHGSPNGNDRK 174
           ++E+ GK FAYDGEKSLFTVG LPRNKLEFTVVLED++SNRNNGNASPD HGSPN  DRK
Sbjct: 120 DSEMGGKKFAYDGEKSLFTVGALPRNKLEFTVVLEDVTSNRNNGNASPDGHGSPNEGDRK 179

Query: 175 RLRRPYRSKTFKVEISFAAKIPIQAIANALRGQESENSQEAFRVLDIILRQHAAKQGCLL 234
           R+RRPY+SKTFKVEISFAAKIP+QAIANALRGQESENSQEA RVLDIILRQHAAKQGCLL
Sbjct: 180 RMRRPYQSKTFKVEISFAAKIPMQAIANALRGQESENSQEAIRVLDIILRQHAAKQGCLL 239

Query: 235 VRQSFFHNDPKNFADVGGGVLGCRGFHSSFRTTQGGLSLNIDVSTTMIIQPGPVVDFLIA 294
           VRQ+FFHNDPKNFADVGGGVLGCRGFHSSFRTTQGGLSLNIDVSTTMIIQPGPVVDFLIA
Sbjct: 240 VRQNFFHNDPKNFADVGGGVLGCRGFHSSFRTTQGGLSLNIDVSTTMIIQPGPVVDFLIA 299

Query: 295 NQNVRDPFSIDWAKAKRTLKNLRIKTITSNQEYKITGLSEKLCKEQMFSLKQKNVKDDDG 354
           NQNVRDPF +DWAKAKRTLKNLRIK   SNQEYKITGLSE  CKEQ F L QK   D+D 
Sbjct: 300 NQNVRDPFQLDWAKAKRTLKNLRIKASPSNQEYKITGLSEMPCKEQTFQLNQKGRDDND- 358

Query: 355 EVQELEITVYDYFVNNRNIDLRYSGDLPCINVGKPKRPTYIPLELCELVSLQRYTKALTN 414
               LE+TVYDYFVN+R I+LRYSGDLPCINVGKPKRPT+IP+ELC LVSLQRYTKAL  
Sbjct: 359 ---PLELTVYDYFVNHRRIELRYSGDLPCINVGKPKRPTFIPIELCSLVSLQRYTKALNT 415

Query: 415 LQRASLVEKSRQKPQERMSVLSNALKLSKYDNEPMLRSCGISISTNFAQVEGRVLPAPRL 474
           LQRASLVEKSRQKPQERMS LSNALK S YD EPMLRSCG+SIST+F QV+GR L AP+L
Sbjct: 416 LQRASLVEKSRQKPQERMSTLSNALKSSNYDAEPMLRSCGVSISTSFVQVDGRQLQAPKL 475

Query: 475 KFGNGEDFSPRNGRWNFNNKKLVQPTKIERWAVVNFSARCDIRSLVRDLIKCGEMKGILI 534
           K GNGEDF PRNGRWNFNNKKLV P+KIERWAVVNFSARCDIR+LVRDL KC EMKGI I
Sbjct: 476 KVGNGEDFFPRNGRWNFNNKKLVDPSKIERWAVVNFSARCDIRNLVRDLTKCAEMKGIPI 535

Query: 535 DQPFDVFEESPQFRRSSPVVRVEKMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKN 594
           + PFDVFEE+PQFRR+ P VRVEKMFD IQSKLPGAP+FLLCLLPERKNSDLYGPWK+KN
Sbjct: 536 EPPFDVFEENPQFRRAPPTVRVEKMFDSIQSKLPGAPKFLLCLLPERKNSDLYGPWKKKN 595

Query: 595 LADFGIVTQCMAPMRVNDQYLTNVLLKINAKLGGLNSLLAVEHSPSIPIVSKVPTIILGM 654
           L+DFGIVTQC+AP RVNDQYLTNVLLKINAKLGGLNS+LAVEHSPSIP+VSKVPTII+GM
Sbjct: 596 LSDFGIVTQCIAPQRVNDQYLTNVLLKINAKLGGLNSMLAVEHSPSIPLVSKVPTIIIGM 655

Query: 655 DVSHGSPGHSDIPSIAAVVSSRHWPLISRYRAAVRTQSPKVEMIDSLFKKVSDTEDEGII 714
           DVSHGSPGHSD+PSIAAVVSSR WPLISRYRA VRTQSPKVEMIDSL+K VSDTEDEG++
Sbjct: 656 DVSHGSPGHSDVPSIAAVVSSRQWPLISRYRACVRTQSPKVEMIDSLYKPVSDTEDEGMM 715

Query: 715 R 715
           R
Sbjct: 716 R 716

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225436053|ref|XP_002275928.1| PREDICTED: protein argonaute 4 [Vitis vinifera] gi|296083994|emb|CBI24382.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449463869|ref|XP_004149653.1| PREDICTED: protein argonaute 4-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|268376309|gb|ACZ04920.1| argonaute 4-like protein [Pelargonium x hortorum] Back     alignment and taxonomy information
>gi|449516890|ref|XP_004165479.1| PREDICTED: LOW QUALITY PROTEIN: protein argonaute 4-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|409127957|gb|AFV15381.1| AGO4A [Solanum lycopersicum] Back     alignment and taxonomy information
>gi|84688912|gb|ABC61505.1| AGO4-2, partial [Nicotiana benthamiana] Back     alignment and taxonomy information
>gi|409127959|gb|AFV15382.1| AGO4B [Solanum lycopersicum] Back     alignment and taxonomy information
>gi|356554251|ref|XP_003545462.1| PREDICTED: protein argonaute 4-like [Glycine max] Back     alignment and taxonomy information
>gi|84688910|gb|ABC61504.1| AGO4-1, partial [Nicotiana benthamiana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9ZVD5AGO4_ARATHNo assigned EC number0.70530.96730.7694yesno
Q0JF58AGO4B_ORYSJNo assigned EC number0.69620.92920.7497yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00017422001
SubName- Full=Chromosome chr6 scaffold_15, whole genome shotgun sequence; (916 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query735
PLN03202 900 PLN03202, PLN03202, protein argonaute; Provisional 0.0
cd04657 426 cd04657, Piwi_ago-like, Piwi_ago-like: PIWI domain 4e-78
pfam02170114 pfam02170, PAZ, PAZ domain 7e-29
smart00950 301 smart00950, Piwi, This domain is found in the prot 8e-29
cd02846114 cd02846, PAZ_argonaute_like, PAZ domain, argonaute 3e-28
cd04658 448 cd04658, Piwi_piwi-like_Euk, Piwi_piwi-like_Euk: P 2e-27
pfam02171 296 pfam02171, Piwi, Piwi domain 1e-26
pfam0869952 pfam08699, DUF1785, Domain of unknown function (DU 3e-20
cd02826 393 cd02826, Piwi-like, Piwi-like: PIWI domain 3e-15
smart00949138 smart00949, PAZ, This domain is named PAZ after th 1e-05
cd02825115 cd02825, PAZ, PAZ domain, named PAZ after the prot 5e-04
>gnl|CDD|215631 PLN03202, PLN03202, protein argonaute; Provisional Back     alignment and domain information 
 Score = 1422 bits (3683), Expect = 0.0
 Identities = 573/698 (82%), Positives = 634/698 (90%), Gaps = 3/698 (0%)

Query: 18  PDSLPPPPPVIPPDFVPTRVEEQEPAKKKVVRVPISRRGLGSRGQRISLLTNHFKVNVTN 77
            D+LPPPPPV+PP+ VP ++E       K  R+P++RRG GS+GQ+I LLTNHFKV+V N
Sbjct: 1   KDALPPPPPVVPPNVVPIKLEP-TKKPSKPKRLPMARRGFGSKGQKIQLLTNHFKVSVNN 59

Query: 78  VEGHFYHYSVSVSYEDGRPVDGKGAGRKVIDRVQETYNAELDGKDFAYDGEKSLFTVGPL 137
            +GHF+HYSVS++YEDGRPVDGKG GRKVID+VQETY+++L GKDFAYDGEKSLFTVG L
Sbjct: 60  PDGHFFHYSVSLTYEDGRPVDGKGIGRKVIDKVQETYSSDLAGKDFAYDGEKSLFTVGAL 119

Query: 138 PRNKLEFTVVLEDISSNRNNGNASPDAHGSPNGNDRKRLRRPYRSKTFKVEISFAAKIPI 197
           P+NKLEFTVVLED+SSNRNNGN SP  +GSPNG DRKR RRPY+SKTFKVEISFAAKIP+
Sbjct: 120 PQNKLEFTVVLEDVSSNRNNGNGSPVGNGSPNGGDRKRSRRPYQSKTFKVEISFAAKIPM 179

Query: 198 QAIANALRGQESENSQEAFRVLDIILRQHAAKQGCLLVRQSFFHNDPKNFADVGGGVLGC 257
           QAIANALRGQESENSQ+A RVLDIILRQHAAKQGCLLVRQSFFHNDPKNF D+GGGVLGC
Sbjct: 180 QAIANALRGQESENSQDALRVLDIILRQHAAKQGCLLVRQSFFHNDPKNFVDLGGGVLGC 239

Query: 258 RGFHSSFRTTQGGLSLNIDVSTTMIIQPGPVVDFLIANQNVRDPFSIDWAKAKRTLKNLR 317
           RGFHSSFRTTQGGLSLNIDVSTTMI+QPGPVVDFLIANQNVRDPF IDW+KAKR LKNLR
Sbjct: 240 RGFHSSFRTTQGGLSLNIDVSTTMIVQPGPVVDFLIANQNVRDPFQIDWSKAKRMLKNLR 299

Query: 318 IKTITSNQEYKITGLSEKLCKEQMFSLKQKNVKDDDGEVQELEITVYDYFVNNRNIDLRY 377
           +K   SNQEYKITGLSEK CKEQ FSLKQ+N   +  EV+ +EITVYDYFV +R I+LRY
Sbjct: 300 VKVSPSNQEYKITGLSEKPCKEQTFSLKQRN--GNGNEVETVEITVYDYFVKHRGIELRY 357

Query: 378 SGDLPCINVGKPKRPTYIPLELCELVSLQRYTKALTNLQRASLVEKSRQKPQERMSVLSN 437
           SGDLPCINVGKPKRPTY P+ELC LVSLQRYTKAL+ LQR+SLVEKSRQKPQERM VL++
Sbjct: 358 SGDLPCINVGKPKRPTYFPIELCSLVSLQRYTKALSTLQRSSLVEKSRQKPQERMKVLTD 417

Query: 438 ALKLSKYDNEPMLRSCGISISTNFAQVEGRVLPAPRLKFGNGEDFSPRNGRWNFNNKKLV 497
           ALK S YD +PMLRSCGISIS+ F QVEGRVLPAP+LK GNGEDF PRNGRWNFNNKKLV
Sbjct: 418 ALKSSNYDADPMLRSCGISISSQFTQVEGRVLPAPKLKVGNGEDFFPRNGRWNFNNKKLV 477

Query: 498 QPTKIERWAVVNFSARCDIRSLVRDLIKCGEMKGILIDQPFDVFEESPQFRRSSPVVRVE 557
           +PTKIERWAVVNFSARCDIR LVRDLIKCGEMKGI I+ PFDVFEE+PQFRR+ P VRVE
Sbjct: 478 EPTKIERWAVVNFSARCDIRHLVRDLIKCGEMKGINIEPPFDVFEENPQFRRAPPPVRVE 537

Query: 558 KMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPMRVNDQYLTN 617
           KMF++IQSKLPG PQFLLC+LPERKNSD+YGPWK+KNL++FGIVTQC+AP RVNDQYLTN
Sbjct: 538 KMFEQIQSKLPGPPQFLLCILPERKNSDIYGPWKKKNLSEFGIVTQCIAPTRVNDQYLTN 597

Query: 618 VLLKINAKLGGLNSLLAVEHSPSIPIVSKVPTIILGMDVSHGSPGHSDIPSIAAVVSSRH 677
           VLLKINAKLGGLNSLLA+EHSPSIP+VSKVPTIILGMDVSHGSPG SD+PSIAAVVSSR 
Sbjct: 598 VLLKINAKLGGLNSLLAIEHSPSIPLVSKVPTIILGMDVSHGSPGQSDVPSIAAVVSSRQ 657

Query: 678 WPLISRYRAAVRTQSPKVEMIDSLFKKVSDTEDEGIIR 715
           WPLISRYRA+VRTQSPKVEMIDSLFK V D +D+GIIR
Sbjct: 658 WPLISRYRASVRTQSPKVEMIDSLFKPVGDKDDDGIIR 695

Length = 900
>gnl|CDD|240015 cd04657, Piwi_ago-like, Piwi_ago-like: PIWI domain, Argonaute-like subfamily Back     alignment and domain information
>gnl|CDD|216914 pfam02170, PAZ, PAZ domain Back     alignment and domain information
>gnl|CDD|214930 smart00950, Piwi, This domain is found in the protein Piwi and its relatives Back     alignment and domain information
>gnl|CDD|239212 cd02846, PAZ_argonaute_like, PAZ domain, argonaute_like subfamily Back     alignment and domain information
>gnl|CDD|240016 cd04658, Piwi_piwi-like_Euk, Piwi_piwi-like_Euk: PIWI domain, Piwi-like subfamily found in eukaryotes Back     alignment and domain information
>gnl|CDD|216915 pfam02171, Piwi, Piwi domain Back     alignment and domain information
>gnl|CDD|219976 pfam08699, DUF1785, Domain of unknown function (DUF1785) Back     alignment and domain information
>gnl|CDD|239208 cd02826, Piwi-like, Piwi-like: PIWI domain Back     alignment and domain information
>gnl|CDD|198017 smart00949, PAZ, This domain is named PAZ after the proteins Piwi Argonaut and Zwille Back     alignment and domain information
>gnl|CDD|239207 cd02825, PAZ, PAZ domain, named PAZ after the proteins Piwi Argonaut and Zwille Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 735
PLN03202 900 protein argonaute; Provisional 100.0
KOG1041 876 consensus Translation initiation factor 2C (eIF-2C 100.0
KOG1042 845 consensus Germ-line stem cell division protein Hiw 100.0
cd04657 426 Piwi_ago-like Piwi_ago-like: PIWI domain, Argonaut 100.0
cd04658 448 Piwi_piwi-like_Euk Piwi_piwi-like_Euk: PIWI domain 100.0
cd02826 393 Piwi-like Piwi-like: PIWI domain. Domain found in 100.0
PF02171 302 Piwi: Piwi domain; InterPro: IPR003165 This domain 99.9
PF02170135 PAZ: PAZ domain; InterPro: IPR003100 This domain i 99.9
cd02845117 PAZ_piwi_like PAZ domain, Piwi_like subfamily. In 99.81
cd02846114 PAZ_argonaute_like PAZ domain, argonaute_like subf 99.8
cd02825115 PAZ PAZ domain, named PAZ after the proteins Piwi 99.8
cd04659 404 Piwi_piwi-like_ProArk Piwi_piwi-like_ProArk: PIWI 99.7
PF0869952 DUF1785: Domain of unknown function (DUF1785); Int 99.53
cd02844135 PAZ_CAF_like PAZ domain, CAF_like subfamily. CAF ( 99.5
cd02843122 PAZ_dicer_like PAZ domain, dicer_like subfamily. D 98.79
COG1431 685 Argonaute homolog, implicated in RNA metabolism [T 93.0
>PLN03202 protein argonaute; Provisional Back     alignment and domain information 
Probab=100.00  E-value=6.1e-126  Score=1128.40  Aligned_cols=704  Identities=81%  Similarity=1.296  Sum_probs=616.0

Q ss_pred             CCCCCCCCCCCCCCCcccccccccccccccccccCCCCCCCCCCEEEEEeeEEEEEecCCCceEEEEEEEEeeCCCCCCC
Q 004699           19 DSLPPPPPVIPPDFVPTRVEEQEPAKKKVVRVPISRRGLGSRGQRISLLTNHFKVNVTNVEGHFYHYSVSVSYEDGRPVD   98 (735)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rp~~Gt~G~~i~L~tN~f~v~~~~~~~~~y~Y~V~i~~~~~~~v~   98 (735)
                      +++||+||.+|+++++...+..+ ....+.+.+++|||||+.|++|.|+||||+|.+..++..+|||+|+|+++.+++++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~RPg~Gt~G~~i~l~aN~f~v~~~~~~~~ly~Y~V~i~p~~~~~~~   80 (900)
T PLN03202          2 DALPPPPPVVPPNVVPIKLEPTK-KPSKPKRLPMARRGFGSKGQKIQLLTNHFKVSVNNPDGHFFHYSVSLTYEDGRPVD   80 (900)
T ss_pred             CCCCCCCCCCCcccccccccccc-cccccccccCCCCCCCCCCCEEEEEeeEEEEeccCCCCcEEEEEEEeccCCCCccc
Confidence            57899999999999988876322 22455668899999999999999999999999865678899999999876556777


Q ss_pred             CCcchHHHHHHHHHHHhhhcCCCCeeecCCCceeecCCCCCCceeEEEEecccccccCCCCCCCCCCCCCCCCccccccC
Q 004699           99 GKGAGRKVIDRVQETYNAELDGKDFAYDGEKSLFTVGPLPRNKLEFTVVLEDISSNRNNGNASPDAHGSPNGNDRKRLRR  178 (735)
Q Consensus        99 ~k~~~r~ii~~l~~~~~~~~~~~~~~yDG~~~l~s~~~L~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (735)
                      +++++++|++++++++...+.+..+||||+++|||+++|+.+..+|.|++.++...++..+++|+++++|++++.+|.+.
T Consensus        81 ~~~~~~~i~~~~~~~~~~~~~~~~~~~Dg~~~l~s~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (900)
T PLN03202         81 GKGIGRKVIDKVQETYSSDLAGKDFAYDGEKSLFTVGALPQNKLEFTVVLEDVSSNRNNGNGSPVGNGSPNGGDRKRSRR  160 (900)
T ss_pred             chhhhHHHHHHHHHhhHHhhCCCceeecCccceEECccCCCCCceEEEEecccccccccccccccccCCccccccccccc
Confidence            78899999999998876667677899999999999999998777888888754333323456677777777777666666


Q ss_pred             CCCCceEEEEEEeeeeeChHHHHHHHcCCCCcchHHHHHHHHHHHhcccccccceecccccccCCCCCccccCCcEEEee
Q 004699          179 PYRSKTFKVEISFAAKIPIQAIANALRGQESENSQEAFRVLDIILRQHAAKQGCLLVRQSFFHNDPKNFADVGGGVLGCR  258 (735)
Q Consensus       179 ~~~~~~~~V~I~~~~~i~~~~l~~~l~g~~~~~~~~~i~~lniilr~~~~~~~~~~vgr~ff~~~~~~~~~l~~G~e~~~  258 (735)
                      ..+.+.|+|+|+++++|++++|.++|.|....+..+++|+||+|||+.++..++..+||+||.++.....++++|+|+|+
T Consensus       161 ~~~~~~~~v~i~~~~~i~~~~L~~~l~~~~~~~~~~~iq~lnivlr~~~~~~~~~~~gr~ff~~~~~~~~~l~~gle~~~  240 (900)
T PLN03202        161 PYQSKTFKVEISFAAKIPMQAIANALRGQESENSQDALRVLDIILRQHAAKQGCLLVRQSFFHNDPKNFVDLGGGVLGCR  240 (900)
T ss_pred             cCCCceEEEEEEEccccCHHHHHHHHcCCCCCCcHHHHHHHHHHHhhhhhhCCCceeccccCCCCCcccccCCCceEEee
Confidence            77889999999999999999999999998777889999999999999998878889999999876555567899999999


Q ss_pred             cceEEEEeeCCeeEEeeecceeeeecCCcHHHHHHHhcCCCCCCchhHHHHHHHhcCcEEEEEecCceEEEeccCccccc
Q 004699          259 GFHSSFRTTQGGLSLNIDVSTTMIIQPGPVVDFLIANQNVRDPFSIDWAKAKRTLKNLRIKTITSNQEYKITGLSEKLCK  338 (735)
Q Consensus       259 Gf~~Svr~~~~gl~LniDvs~~~F~~~~~l~d~l~~~~~~~~~~~~~~~~~~~~Lkgl~V~t~~~nr~~~I~gi~~~~~~  338 (735)
                      ||++|||+++++|+||||+++++|+++++|+|+|.++.+.++....+|.++.++|+|++|.++|++++|+|.||++.+++
T Consensus       241 G~~~Svr~~~~~l~LnvDvs~~~F~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~lkGl~V~t~~~~k~yrI~~i~~~~a~  320 (900)
T PLN03202        241 GFHSSFRTTQGGLSLNIDVSTTMIVQPGPVVDFLIANQNVRDPFQIDWSKAKRMLKNLRVKVSPSNQEYKITGLSEKPCK  320 (900)
T ss_pred             eeeeEeeeccCceEEeeeeeeeeeecCCcHHHHHHHhcCcCCccchhHHHHHHHhcCCEEEEecCCceEEEeeccCCCCc
Confidence            99999999999999999999999999999999999876655544456788999999999999999999999999999999


Q ss_pred             cceeecccCCCCCCCCCccceeeeHHHHHHHhcCcccccCC-CCCeEecCCCCCCccccccceeEcCCCcccCCCCHHHH
Q 004699          339 EQMFSLKQKNVKDDDGEVQELEITVYDYFVNNRNIDLRYSG-DLPCINVGKPKRPTYIPLELCELVSLQRYTKALTNLQR  417 (735)
Q Consensus       339 ~~~F~~~~~~~~~~~~~~~~~~iTV~eYf~~~Y~i~L~~~p-~lP~l~vg~~~~~~ylP~Elc~v~~~Qr~~~~Ls~~q~  417 (735)
                      +.+|.++++++. + .++.+++|||+|||+++|||+|+| | ++|||++|+.++++|||||||.|+|+|+++++|++.|+
T Consensus       321 ~~~F~~~~~~~~-~-~~~~~~~iSv~dYfk~~Yni~l~~-p~~lPlv~~g~~~~~~ylP~ElC~i~~~Q~~~~~l~~~q~  397 (900)
T PLN03202        321 EQTFSLKQRNGN-G-NEVETVEITVYDYFVKHRGIELRY-SGDLPCINVGKPKRPTYFPIELCSLVSLQRYTKALSTLQR  397 (900)
T ss_pred             ceEEEcccCCcc-c-ccCCcceEEHHHHHHHHcCccccC-CCCCCEEEcCCCCCCeEEcceeeEccCCceechhCCHHHH
Confidence            999987643210 0 112245899999999999999999 6 99999999988999999999999999999999999999


Q ss_pred             HHHHHHHhcChHHHHHHHHHHHHhcCCCCchhhhccCceecCcceeeeeeecCCCeeeeCCCcccCCCCCccccCCceee
Q 004699          418 ASLVEKSRQKPQERMSVLSNALKLSKYDNEPMLRSCGISISTNFAQVEGRVLPAPRLKFGNGEDFSPRNGRWNFNNKKLV  497 (735)
Q Consensus       418 ~~mi~~s~~~P~eR~~~i~~~~~~~~~~~~~~L~~~Gi~I~~~~~~V~gRvL~~P~i~~g~~~~~~~~~g~Wn~~~~kf~  497 (735)
                      ++|+++|+++|.+|.+.|.++++.++++.+++|++|||+|+++|++|+||||++|+|.||++..+.|.+|+||+++++|+
T Consensus       398 ~~mik~a~~~P~~R~~~i~~~~~~~~~~~~~~l~~fGi~i~~~~~~V~gRvL~~P~I~y~~~~~~~p~~g~Wn~~~~kf~  477 (900)
T PLN03202        398 SSLVEKSRQKPQERMKVLTDALKSSNYDADPMLRSCGISISSQFTQVEGRVLPAPKLKVGNGEDFFPRNGRWNFNNKKLV  477 (900)
T ss_pred             HHHHHHHccCHHHHHHHHHHHHHHhCCCCchHHHHCCcEecCCceEEeEEEcCCceeecCCCcccCCCCCceecCCCEec
Confidence            99999999999999999999999999988999999999999999999999999999999988767788999999999999


Q ss_pred             CCcccceEEEEEeCCcccHHHHHHHHHHHhhhcCCcCCCCccccccCCcccCCChhHHHHHHHHHHHhhCCCCCeEEEEE
Q 004699          498 QPTKIERWAVVNFSARCDIRSLVRDLIKCGEMKGILIDQPFDVFEESPQFRRSSPVVRVEKMFDEIQSKLPGAPQFLLCL  577 (735)
Q Consensus       498 ~p~~i~~W~vv~~~~~~~~~~f~~~L~~~~~~~G~~i~~p~~v~~~~~~~~~~~~~~~ve~~~~~i~~~~~~~~~~vl~I  577 (735)
                      +|+.+++|+|++|.++++++.|++.|.+.|+.+||.+.+|..+...++++......++++.+++++++.++..++|||||
T Consensus       478 ~~~~l~~W~vv~~~~~~~~~~f~~~l~~~~~~~G~~i~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~qlv~vI  557 (900)
T PLN03202        478 EPTKIERWAVVNFSARCDIRHLVRDLIKCGEMKGINIEPPFDVFEENPQFRRAPPPVRVEKMFEQIQSKLPGPPQFLLCI  557 (900)
T ss_pred             CCCccceEEEEEecCchhHHHHHHHHHHHHHHCCceeCCCccccccccccccccchHHHHHHHHHHHHhccCCCeEEEEE
Confidence            99999999999988767899999999999999999999886554444433333445789999999998876679999999


Q ss_pred             cCCCCCCCchhhhhhhcccccCceeeEeecccCCHHHHHHHHHHHhhccCCceeeccccCCCCCCcccCCCEEEEeeeec
Q 004699          578 LPERKNSDLYGPWKRKNLADFGIVTQCMAPMRVNDQYLTNVLLKINAKLGGLNSLLAVEHSPSIPIVSKVPTIILGMDVS  657 (735)
Q Consensus       578 lp~~k~~~~Y~~iK~~~~~~~GI~TQci~~~k~~~q~~~Ni~lKIN~KLGG~n~~l~~~~~~~ip~~~~~~tMIvG~DVs  657 (735)
                      ||+++++++|+.||++||+++||+||||..++.++||++|||||||+||||+||.|..+....+|++.+.+|||||+||+
T Consensus       558 lp~~~~~~~Y~~IK~~~~~~~gV~TQcv~~~~~~~q~~~NIalKiN~KLGG~n~~~~~~~~~~i~~~~~~~tMivG~DVt  637 (900)
T PLN03202        558 LPERKNSDIYGPWKKKNLSEFGIVTQCIAPTRVNDQYLTNVLLKINAKLGGLNSLLAIEHSPSIPLVSKVPTIILGMDVS  637 (900)
T ss_pred             EcCCCCcchHHHHHHHHhhccCcccEEeCccccchHHHHHHHHHHhhhhCCcceeecccccccCccccCCCeEEEEEEee
Confidence            99745789999999999999999999998878899999999999999999999999866545688888889999999999


Q ss_pred             cCCCCCCCCCeEEEEEeccCCCcccceeeEEEecCCceeeccccccccCCCcccchHHHHHHHHHhccC
Q 004699          658 HGSPGHSDIPSIAAVVSSRHWPLISRYRAAVRTQSPKVEMIDSLFKKVSDTEDEGIIRLFYCLTYLRWE  726 (735)
Q Consensus       658 Hp~~~~~~~pSiaavVaS~d~p~~tky~~~~~~Q~~~~E~I~~L~~~~~~~~~~~m~~e~L~~f~~~n~  726 (735)
                      ||+|++.+.|||||+|||+|++.+++|++.+++|.+++|+|++|.....+..+.+|+.|+|+.|+++|+
T Consensus       638 Hp~~g~~~~pSiaa~VaS~d~~~~~~y~s~~~~Q~~~~E~i~~l~~~~~~~~~~~m~~~~L~~~~~~~~  706 (900)
T PLN03202        638 HGSPGQSDVPSIAAVVSSRQWPLISRYRASVRTQSPKVEMIDSLFKPVGDKDDDGIIRELLLDFYTSSG  706 (900)
T ss_pred             cCCCCCCCCCceEEEEeccCcccccceeeEEEecCCCceeeeehhccccccchHHHHHHHHHHHHHHcC
Confidence            999986557999999999998679999999999999999999997655555567899999999999775

>KOG1041 consensus Translation initiation factor 2C (eIF-2C) and related proteins [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1042 consensus Germ-line stem cell division protein Hiwi/Piwi; negative developmental regulator [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>cd04657 Piwi_ago-like Piwi_ago-like: PIWI domain, Argonaute-like subfamily Back     alignment and domain information
>cd04658 Piwi_piwi-like_Euk Piwi_piwi-like_Euk: PIWI domain, Piwi-like subfamily found in eukaryotes Back     alignment and domain information
>cd02826 Piwi-like Piwi-like: PIWI domain Back     alignment and domain information
>PF02171 Piwi: Piwi domain; InterPro: IPR003165 This domain is found in the stem cell self-renewal protein Piwi and its relatives in Drosophila melanogaster [] Back     alignment and domain information
>PF02170 PAZ: PAZ domain; InterPro: IPR003100 This domain is named after the proteins Piwi Argonaut and Zwille Back     alignment and domain information
>cd02845 PAZ_piwi_like PAZ domain, Piwi_like subfamily Back     alignment and domain information
>cd02846 PAZ_argonaute_like PAZ domain, argonaute_like subfamily Back     alignment and domain information
>cd02825 PAZ PAZ domain, named PAZ after the proteins Piwi Argonaut and Zwille Back     alignment and domain information
>cd04659 Piwi_piwi-like_ProArk Piwi_piwi-like_ProArk: PIWI domain, Piwi-like subfamily found in Archaea and Bacteria Back     alignment and domain information
>PF08699 DUF1785: Domain of unknown function (DUF1785); InterPro: IPR014811 This region is found in argonaute [] proteins and often co-occurs with IPR003103 from INTERPRO and IPR003165 from INTERPRO Back     alignment and domain information
>cd02844 PAZ_CAF_like PAZ domain, CAF_like subfamily Back     alignment and domain information
>cd02843 PAZ_dicer_like PAZ domain, dicer_like subfamily Back     alignment and domain information
>COG1431 Argonaute homolog, implicated in RNA metabolism [Translation, ribosomal structure and biogenesis] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query735
4ei1_A 859 Crystal Structure Of Human Argonaute2 Length = 859 1e-63
4f3t_A 861 Human Argonaute-2 - Mir-20a Complex Length = 861 1e-63
1r4k_A169 Solution Structure Of The Drosophila Argonaute 1 Pa 3e-14
4g0o_A139 Crystal Structure Of Arabidopsis Thaliana Ago5 Mid 7e-14
3vnb_A155 Structural Insights Into Small Rna Sorting And Mrna 2e-12
1si2_A149 Crystal Structure Of The Paz Domain Of Human Eif2c1 2e-10
1si3_A149 Crystal Structure Of The Paz Domain Of Human Eif2c1 7e-10
4g0p_A147 Crystal Structure Of Arabidopsis Thaliana Ago1 Mid 5e-09
3vna_A154 Structural Insights Into Small Rna Sorting And Mrna 6e-09
4f1n_A 1046 Crystal Structure Of Kluyveromyces Polysporus Argon 3e-08
2yhb_A 437 Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Pi 4e-08
2yha_A 388 Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Pi 5e-08
4g0x_A147 Crystal Structure Of Arabidopsis Thaliana Ago1 Mid 6e-08
4g0m_A150 Crystal Structure Of Arabidopsis Thaliana Ago2 Mid 2e-05
3luc_A138 Crystal Structure Of Mid Domain From Hago2 Length = 6e-05
>pdb|4EI1|A Chain A, Crystal Structure Of Human Argonaute2 Length = 859 Back     alignment and structure 
Iteration: 1

 Score =  241 bits (615), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 196/684 (28%), Positives = 321/684 (46%), Gaps = 87/684 (12%)
Query: 51  PISRRGLGSRGQRISLLTNHFKVNVTNVEGHFYHYSVSVSYEDGRPVDGKGAGRKVIDRV 110
           P  R   G+ G+ I L  N F++++  ++   YHY + +  E       +   R++++ +
Sbjct: 25  PPPRPDFGTSGRTIKLQANFFEMDIPKID--IYHYELDIKPEKC----PRRVNREIVEHM 78
Query: 111 QETYNAELDG-KDFAYDGEKSLFTVGPLP--RNKLEFTVVLEDISSNRNNGNASPDAHGS 167
            + +  ++ G +   +DG K+L+T  PLP  R+K+E  V L                   
Sbjct: 79  VQHFKTQIFGDRKPVFDGRKNLYTAMPLPIGRDKVELEVTLPG----------------- 121
Query: 168 PNGNDRKRLRRPYRSKTFKVEISFAAKIPIQAIANALRGQESENSQEAFRVLDIILRQHA 227
             G DR           FKV I + + + +QA+ +AL G+      E  + LD+++R H 
Sbjct: 122 -EGKDR----------IFKVSIKWVSCVSLQALHDALSGRLPSVPFETIQALDVVMR-HL 169
Query: 228 AKQGCLLVRQSFFHNDPKNFADVGGGVLGCRGFHSSFRTTQGGLSLNIDVSTTMIIQPGP 287
                  V +SFF         +GGG     GFH S R +   + LNIDVS T   +  P
Sbjct: 170 PSMRYTPVGRSFFTASEGCSNPLGGGREVWFGFHQSVRPSLWKMMLNIDVSATAFYKAQP 229
Query: 288 VVDFLIANQNVRDPFSIDW----------AKAKRTLKNLRIKTITSNQ---EYKITGLSE 334
           V++F+     V D  SI+            K  + +K L+++     Q   +Y++  ++ 
Sbjct: 230 VIEFVC---EVLDFKSIEEQQKPLTDSQRVKFTKEIKGLKVEITHCGQMKRKYRVCNVTR 286
Query: 335 KLCKEQMFSLKQKNVKDDDGEVQELEITVYDYFVNNRNIDLRYSGDLPCINVGKPKRPTY 394
           +    Q F L+Q++        Q +E TV  YF +   + LRY   LPC+ VG+ ++ TY
Sbjct: 287 RPASHQTFPLQQES-------GQTVECTVAQYFKDRHKLVLRYP-HLPCLQVGQEQKHTY 338
Query: 395 IPLELCELVSLQRYTKALTNLQRASLVEKSRQKPQERMSVLSNALKLSKYDNEPMLRSCG 454
           +PLE+C +V+ QR  K LT+ Q ++++  + +   +R   +S  ++ + ++ +P +R  G
Sbjct: 339 LPLEVCNIVAGQRCIKKLTDNQTSTMIRATARSAPDRQEEISKLMRSADFNTDPYVREFG 398
Query: 455 ISISTNFAQVEGRVLPAPRLKFG--NGEDFSPRNGRWNFNNKKLVQPTKIERWAVVNFSA 512
           I +      V GRVL  P + +G  N    +P  G W+  NK+     +I+ WA+  F+ 
Sbjct: 399 IMVKDEMTDVTGRVLQPPSILYGGRNKAIATPVQGVWDMRNKQFHTGIEIKVWAIACFAP 458
Query: 513 R-----CDIRSLVRDLIKCGEMKGILID-QPFDVFEESPQFRRSSPVVRVEKMFDEIQSK 566
           +       ++S    L K     G+ I  QP   F +  Q   S     VE MF  +++ 
Sbjct: 459 QRQCTEVHLKSFTEQLRKISRDAGMPIQGQP--CFCKYAQGADS-----VEPMFRHLKNT 511
Query: 567 LPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMA---PMRVNDQYLTNVLLKIN 623
             G  Q ++ +LP +  + +Y   KR      G+ TQC+      R   Q L+N+ LKIN
Sbjct: 512 YAGL-QLVVVILPGK--TPVYAEVKRVGDTVLGMATQCVQMKNVQRTTPQTLSNLCLKIN 568
Query: 624 AKLGGLNSLLAVEHSPSIPIVSKVPTIILGMDVSHGSPGHSDIPSIAAVVSSRHWPLISR 683
            KLGG+N++L  +  P    V + P I LG DV+H   G    PSIAAVV S      +R
Sbjct: 569 VKLGGVNNILLPQGRPP---VFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMD-AHPNR 624
Query: 684 YRAAVRTQSPKVEMIDSLFKKVSD 707
           Y A VR Q  + E+I  L   V +
Sbjct: 625 YCATVRVQQHRQEIIQDLAAMVRE 648
>pdb|4F3T|A Chain A, Human Argonaute-2 - Mir-20a Complex Length = 861 Back     alignment and structure
>pdb|1R4K|A Chain A, Solution Structure Of The Drosophila Argonaute 1 Paz Domain Length = 169 Back     alignment and structure
>pdb|4G0O|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago5 Mid Domain Length = 139 Back     alignment and structure
>pdb|3VNB|A Chain A, Structural Insights Into Small Rna Sorting And Mrna Binding By Arabidopsis Ago Domains Length = 155 Back     alignment and structure
>pdb|1SI2|A Chain A, Crystal Structure Of The Paz Domain Of Human Eif2c1 In Complex With A 9-Mer Sirna-Like Duplex Of Deoxynucleotide Overhang Length = 149 Back     alignment and structure
>pdb|1SI3|A Chain A, Crystal Structure Of The Paz Domain Of Human Eif2c1 In Complex With A 9-Mer Sirna-Like Duplex Length = 149 Back     alignment and structure
>pdb|4G0P|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago1 Mid Domain In Complex With Ump Length = 147 Back     alignment and structure
>pdb|3VNA|A Chain A, Structural Insights Into Small Rna Sorting And Mrna Binding By Arabidopsis Ago Mid Domains Length = 154 Back     alignment and structure
>pdb|4F1N|A Chain A, Crystal Structure Of Kluyveromyces Polysporus Argonaute With A Guide Rna Length = 1046 Back     alignment and structure
>pdb|2YHB|A Chain A, Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Piwi Domains Length = 437 Back     alignment and structure
>pdb|2YHA|A Chain A, Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Piwi Domains Length = 388 Back     alignment and structure
>pdb|4G0X|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago1 Mid Domain Length = 147 Back     alignment and structure
>pdb|4G0M|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago2 Mid Domain Length = 150 Back     alignment and structure
>pdb|3LUC|A Chain A, Crystal Structure Of Mid Domain From Hago2 Length = 138 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query735
4f3t_A 861 Protein argonaute-2; hydrolase/gene regulation, RN 1e-156
4f1n_A 1046 Kpago; argonaute, RNAI, RNAse H, RNA binding prote 1e-135
3ho1_A 685 Argonaute; argonaute, protein-DNA-RNA complex, nuc 6e-63
1yvu_A 706 Hypothetical protein AQ_1447; RNAse H fold, RNA bi 1e-57
2yha_A 388 Post-transcriptional gene silencing protein QDE-2; 7e-44
2yhb_A 437 QDE-2, post-transcriptional gene silencing protein 6e-41
4g0x_A147 Protein argonaute 1; MID domain, small RNA 5' nucl 1e-35
4g0o_A139 Protein argonaute 5; MID domain, small RNA 5' nucl 2e-35
4g0m_A150 Protein argonaute 2; MID domain, small RNA 5' nucl 2e-34
3luc_A138 Protein argonaute-2; MID domain, ribonucleoprotein 9e-31
1u04_A 771 Argonaute, hypothetical protein PF0537; RNAI, sile 1e-28
1vyn_A143 Argonaute2; nucleic acid binding, RNA interference 2e-27
3mj0_A124 Protein argonaute-2; argonaut, PAZ domain, 3'-END 1e-26
2w42_A 427 PIWI, putative uncharacterized protein; RNAI, RISC 4e-26
2xfm_A150 MIWI, PIWI-like protein 1; RNA-protein complex, di 8e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
3qir_A148 PIWI-like protein 2; structural genomics consortiu 7e-08
3o7v_X124 PIWI-like protein 1; PIWI, RNA silencing, PI-RNA, 4e-06
1r6z_P509 Chimera of maltose-binding periplasmic protein AN 3e-05
>4f3t_A Protein argonaute-2; hydrolase/gene regulation, RNAI, slicer, hydrolase-RNA; 2.25A {Homo sapiens} PDB: 4ei1_A 4ei3_A* 1r4k_A 1si2_A 1si3_A Length = 861 Back     alignment and structure
 Score =  475 bits (1222), Expect = e-156
 Identities = 182/707 (25%), Positives = 310/707 (43%), Gaps = 84/707 (11%)

Query: 16  GAPDSLPPPPPVIPPDFVPTRVEEQEPAKKKVVRVPISRRGLGSRGQRISLLTNHFKVNV 75
           GA  S    P + PP   P       P +    + P  R   G+ G+ I L  N F++++
Sbjct: 1   GAMYS-GAGPALAPPAPPP-------PIQGYAFKPP-PRPDFGTSGRTIKLQANFFEMDI 51

Query: 76  TNVEGHFYHYSVSVSYEDGRPVDGKGAGRKVIDRVQETYNAE-LDGKDFAYDGEKSLFTV 134
                  YHY + +  E       +   R++++ + + +  +    +   +DG K+L+T 
Sbjct: 52  PK--IDIYHYELDIKPE----KCPRRVNREIVEHMVQHFKTQIFGDRKPVFDGRKNLYTA 105

Query: 135 GPLPRNKLEFTVVLEDISSNRNNGNASPDAHGSPNGNDRKRLRRPYRSKTFKVEISFAAK 194
            PLP  + +  + +                           L    + + FKV I + + 
Sbjct: 106 MPLPIGRDKVELEVT--------------------------LPGEGKDRIFKVSIKWVSC 139

Query: 195 IPIQAIANALRGQESENSQEAFRVLDIILRQHAAKQGCLLVRQSFFHNDPKNFADVGGGV 254
           + +QA+ +AL G+      E  + LD+++R   + +    V +SFF         +GGG 
Sbjct: 140 VSLQALHDALSGRLPSVPFETIQALDVVMRHLPSMR-YTPVGRSFFTASEGCSNPLGGGR 198

Query: 255 LGCRGFHSSFRTTQGGLSLNIDVSTTMIIQPGPVVDFLIANQNVRDPFSI-------DWA 307
               GFH S R +   + LNIDVS T   +  PV++F+    + +               
Sbjct: 199 EVWFGFHQSVRPSLWKMMLNIDVSATAFYKAQPVIEFVCEVLDFKSIEEQQKPLTDSQRV 258

Query: 308 KAKRTLKNLRIKTI---TSNQEYKITGLSEKLCKEQMFSLKQKNVKDDDGEVQELEITVY 364
           K  + +K L+++        ++Y++  ++ +    Q F L            Q +E TV 
Sbjct: 259 KFTKEIKGLKVEITHCGQMKRKYRVCNVTRRPASHQTFPL-------QQESGQTVECTVA 311

Query: 365 DYFVNNRNIDLRYSGDLPCINVGKPKRPTYIPLELCELVSLQRYTKALTNLQRASLVEKS 424
            YF +   + LRY   LPC+ VG+ ++ TY+PLE+C +V+ QR  K LT+ Q ++++  +
Sbjct: 312 QYFKDRHKLVLRYP-HLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIRAT 370

Query: 425 RQKPQERMSVLSNALKLSKYDNEPMLRSCGISISTNFAQVEGRVLPAPRLKFGNGEDF-- 482
            +   +R   +S  ++ + ++ +P +R  GI +      V GRVL  P + +G       
Sbjct: 371 ARSAPDRQEEISKLMRSASFNTDPYVREFGIMVKDEMTDVTGRVLQPPSILYGGRNKAIA 430

Query: 483 SPRNGRWNFNNKKLVQPTKIERWAVVNFSAR-----CDIRSLVRDLIKCGEMKGILIDQP 537
           +P  G W+  NK+     +I+ WA+  F+ +       ++S    L K     G+ I   
Sbjct: 431 TPVQGVWDMRNKQFHTGIEIKVWAIACFAPQRQCTEVHLKSFTEQLRKISRDAGMPIQGQ 490

Query: 538 FDVFEESPQFRRSSPVVRVEKMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLAD 597
                     + +     VE MF  +++   G  Q ++ +LP +    +Y   KR     
Sbjct: 491 P------CFCKYAQGADSVEPMFRHLKNTYAG-LQLVVVILPGKT--PVYAEVKRVGDTV 541

Query: 598 FGIVTQCMAP---MRVNDQYLTNVLLKINAKLGGLNSLLAVEHSPSIPIVSKVPTIILGM 654
            G+ TQC+      R   Q L+N+ LKIN KLGG+N++L        P V + P I LG 
Sbjct: 542 LGMATQCVQMKNVQRTTPQTLSNLCLKINVKLGGVNNIL---LPQGRPPVFQQPVIFLGA 598

Query: 655 DVSHGSPGHSDIPSIAAVVSSRHWPLISRYRAAVRTQSPKVEMIDSL 701
           DV+H   G    PSIAAVV S      +RY A VR Q  + E+I  L
Sbjct: 599 DVTHPPAGDGKKPSIAAVVGSMD-AHPNRYCATVRVQQHRQEIIQDL 644
>4f1n_A Kpago; argonaute, RNAI, RNAse H, RNA binding protein-RNA complex; 3.19A {Vanderwaltozyma polyspora} Length = 1046 Back     alignment and structure
>3ho1_A Argonaute; argonaute, protein-DNA-RNA complex, nucleic acid binding Pro RNA complex; 2.60A {Thermus thermophilus} PDB: 3dlb_A* 3dlh_A* 3f73_A* 3hm9_A 3hvr_A 3hxm_A* 3hk2_A 3hjf_A Length = 685 Back     alignment and structure
>1yvu_A Hypothetical protein AQ_1447; RNAse H fold, RNA binding protein, gene regulation; 2.90A {Aquifex aeolicus} SCOP: b.34.14.1 c.55.3.10 PDB: 2f8s_A 2f8t_A 2nub_A Length = 706 Back     alignment and structure
>2yha_A Post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; HET: GOL; 1.85A {Neurospora crassa} PDB: 2xdy_A Length = 388 Back     alignment and structure
>2yhb_A QDE-2, post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; 3.65A {Neurospora crassa} Length = 437 Back     alignment and structure
>4g0x_A Protein argonaute 1; MID domain, small RNA 5' nucleotide recognition, gene regula; 1.35A {Arabidopsis thaliana} PDB: 4g0q_A* 4g0p_A 4g0y_A* 4g0z_A* Length = 147 Back     alignment and structure
>4g0o_A Protein argonaute 5; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.19A {Arabidopsis thaliana} Length = 139 Back     alignment and structure
>4g0m_A Protein argonaute 2; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.31A {Arabidopsis thaliana} Length = 150 Back     alignment and structure
>3luc_A Protein argonaute-2; MID domain, ribonucleoprotein, RNA-binding, RNA-mediated GEN silencing, translation regulation, RNA binding protein; 1.69A {Homo sapiens} PDB: 3lud_A* 3lug_A 3luh_A 3luj_A* 3luk_A 3qx8_A* 3qx9_A* Length = 138 Back     alignment and structure
>1u04_A Argonaute, hypothetical protein PF0537; RNAI, silencing, PIWI, PAZ, RISC, slicer, RNAse H hydrolase-gene regulation complex; 2.25A {Pyrococcus furiosus} SCOP: b.34.14.1 c.55.3.10 PDB: 1z25_A 1z26_A Length = 771 Back     alignment and structure
>3mj0_A Protein argonaute-2; argonaut, PAZ domain, 3'-END 2'-O-methylated ssRNA, RNA-RNA protein complex; HET: OMU; 2.31A {Drosophila melanogaster} PDB: 1t2r_A 1t2s_A Length = 124 Back     alignment and structure
>2w42_A PIWI, putative uncharacterized protein; RNAI, RISC, argonaute, PIWI domain, protein/DNA complex; 1.90A {Archaeoglobus fulgidus} PDB: 1ytu_A 2bgg_A 1w9h_A Length = 427 Back     alignment and structure
>2xfm_A MIWI, PIWI-like protein 1; RNA-protein complex, differentiation, RNA interference; HET: OMU; NMR {Mus musculus} Length = 150 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3qir_A PIWI-like protein 2; structural genomics consortium, SGC, PAZ domain, RNAI, RNA B RNA binding protein; 2.45A {Homo sapiens} PDB: 3o7x_A Length = 148 Back     alignment and structure
>3o7v_X PIWI-like protein 1; PIWI, RNA silencing, PI-RNA, HIWI1, HILI, PAZ domain, RNA BI protein; HET: OMU; 2.10A {Homo sapiens} PDB: 2l5c_A 2l5d_A 3o3i_X 3o6e_X* Length = 124 Back     alignment and structure
>1r6z_P Chimera of maltose-binding periplasmic protein AN argonaute 2; deviant OB fold, RNAI, gene regulation; HET: MAL; 2.80A {Escherichia coli} SCOP: b.34.14.1 c.94.1.1 Length = 509 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query735
4f3t_A 861 Protein argonaute-2; hydrolase/gene regulation, RN 100.0
4f1n_A 1046 Kpago; argonaute, RNAI, RNAse H, RNA binding prote 100.0
1yvu_A 706 Hypothetical protein AQ_1447; RNAse H fold, RNA bi 100.0
1u04_A 771 Argonaute, hypothetical protein PF0537; RNAI, sile 100.0
3ho1_A 685 Argonaute; argonaute, protein-DNA-RNA complex, nuc 100.0
2yha_A 388 Post-transcriptional gene silencing protein QDE-2; 100.0
2yhb_A 437 QDE-2, post-transcriptional gene silencing protein 100.0
1vyn_A143 Argonaute2; nucleic acid binding, RNA interference 99.94
4g0o_A139 Protein argonaute 5; MID domain, small RNA 5' nucl 99.94
4g0x_A147 Protein argonaute 1; MID domain, small RNA 5' nucl 99.93
4g0m_A150 Protein argonaute 2; MID domain, small RNA 5' nucl 99.92
2xfm_A150 MIWI, PIWI-like protein 1; RNA-protein complex, di 99.92
3luc_A138 Protein argonaute-2; MID domain, ribonucleoprotein 99.92
3qir_A148 PIWI-like protein 2; structural genomics consortiu 99.91
3mj0_A124 Protein argonaute-2; argonaut, PAZ domain, 3'-END 99.89
3o7v_X124 PIWI-like protein 1; PIWI, RNA silencing, PI-RNA, 99.87
2w42_A 427 PIWI, putative uncharacterized protein; RNAI, RISC 99.82
1r6z_P509 Chimera of maltose-binding periplasmic protein AN 99.82
2qvw_A 756 GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral 98.81
>4f3t_A Protein argonaute-2; hydrolase/gene regulation, RNAI, slicer, hydrolase-RNA; 2.25A {Homo sapiens} PDB: 4ei1_A 4ei3_A* 1r4k_A 1si2_A 1si3_A Back     alignment and structure
Probab=100.00  E-value=2.6e-116  Score=1046.23  Aligned_cols=617  Identities=29%  Similarity=0.511  Sum_probs=527.2

Q ss_pred             cccccCCCCCCCCCCEEEEEeeEEEEEecCCCceEEEEEEEEeeCCCCCCCCCcchHHHHHHHHHHHhhh-cCCCCeeec
Q 004699           48 VRVPISRRGLGSRGQRISLLTNHFKVNVTNVEGHFYHYSVSVSYEDGRPVDGKGAGRKVIDRVQETYNAE-LDGKDFAYD  126 (735)
Q Consensus        48 ~~~~~~Rp~~Gt~G~~i~L~tN~f~v~~~~~~~~~y~Y~V~i~~~~~~~v~~k~~~r~ii~~l~~~~~~~-~~~~~~~yD  126 (735)
                      ...+|+|||+|+.|++|.|+||||+|.+.  +..+|||+|+|++    +.++++++|+|++++.+++..+ |++..+|||
T Consensus        24 ~~~~p~RPg~Gt~G~~i~l~aN~F~v~~~--~~~ly~Y~V~i~p----~~~~~~~~r~i~~~l~~~~~~~~~~~~~~afD   97 (861)
T 4f3t_A           24 AFKPPPRPDFGTSGRTIKLQANFFEMDIP--KIDIYHYELDIKP----EKCPRRVNREIVEHMVQHFKTQIFGDRKPVFD   97 (861)
T ss_dssp             -CCCCBCCCCCCCSEEEEEEESEEEEECC--SCEEEEEEEEEES----CSCCHHHHHHHHHHHHHHSCCCCCTTCCCEEC
T ss_pred             cccCCCCCCCCCCCcEEEEEeeeEEEECC--CCceeeeeEEeCC----CcCcHHHHHHHHHHHHHHhhhhhhcCceEEEc
Confidence            45678999999999999999999999874  5679999999964    4556788999999999887433 555667999


Q ss_pred             CCCceeecCCCCCCceeEEEEecccccccCCCCCCCCCCCCCCCCccccccCCCCCceEEEEEEeeeeeChHHHHHHHcC
Q 004699          127 GEKSLFTVGPLPRNKLEFTVVLEDISSNRNNGNASPDAHGSPNGNDRKRLRRPYRSKTFKVEISFAAKIPIQAIANALRG  206 (735)
Q Consensus       127 G~~~l~s~~~L~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~I~~~~~i~~~~l~~~l~g  206 (735)
                      |+++|||+++||.+...+++.+... +                         ..++++|+|+|++++++++++|.+||+|
T Consensus        98 G~~~l~s~~~L~~~~~~~~~~v~~~-~-------------------------~~~~~~~~V~I~~~~~i~l~~L~~~l~g  151 (861)
T 4f3t_A           98 GRKNLYTAMPLPIGRDKVELEVTLP-G-------------------------EGKDRIFKVSIKWVSCVSLQALHDALSG  151 (861)
T ss_dssp             SSSEEEESSCCSCSSCEEEEECCC---------------------------------CEEEEEEEEEEEEHHHHHHHHHT
T ss_pred             CcceEEECCcCCCCCcceEEEEecC-C-------------------------CCCCcEEEEEEEEeeecCHHHHHHHhcC
Confidence            9999999999997654433332210 0                         0135789999999999999999999999


Q ss_pred             CCCcchHHHHHHHHHHHhcccccccceecccccccCCCCCccccCCcEEEeecceEEEEeeCCeeEEeeecceeeeecCC
Q 004699          207 QESENSQEAFRVLDIILRQHAAKQGCLLVRQSFFHNDPKNFADVGGGVLGCRGFHSSFRTTQGGLSLNIDVSTTMIIQPG  286 (735)
Q Consensus       207 ~~~~~~~~~i~~lniilr~~~~~~~~~~vgr~ff~~~~~~~~~l~~G~e~~~Gf~~Svr~~~~gl~LniDvs~~~F~~~~  286 (735)
                      ...+.+++++|+||||||+.+ ..++..+||+||++..+...++++|+|+|+||++|||+++++|+||+|+++++|++++
T Consensus       152 ~~~~~~~~~iq~Lniilr~~~-~~~~~~vGR~Ff~~~~~~~~~lg~Gle~w~G~~~Svr~~~~~l~LnvDvs~~~F~~~~  230 (861)
T 4f3t_A          152 RLPSVPFETIQALDVVMRHLP-SMRYTPVGRSFFTASEGCSNPLGGGREVWFGFHQSVRPSLWKMMLNIDVSATAFYKAQ  230 (861)
T ss_dssp             CSSSCCHHHHHHHHHHHHHHH-HHHSEEETTEEECCC---CCEEETTEEEEEEEEEEEEECSSSEEEEEEEEEEEEECCE
T ss_pred             CCCCCcHHHHHHHHHHHHhhc-cccccccCCCccCCCCCceeccCCCEEEEeceeEEEEecCCccEEeecccceeEeeCC
Confidence            987788999999999999964 4568999999999875544678999999999999999999999999999999999999


Q ss_pred             cHHHHHHHhcCCCCC-------CchhHHHHHHHhcCcEEEEEe---cCceEEEeccCccccccceeecccCCCCCCCCCc
Q 004699          287 PVVDFLIANQNVRDP-------FSIDWAKAKRTLKNLRIKTIT---SNQEYKITGLSEKLCKEQMFSLKQKNVKDDDGEV  356 (735)
Q Consensus       287 ~l~d~l~~~~~~~~~-------~~~~~~~~~~~Lkgl~V~t~~---~nr~~~I~gi~~~~~~~~~F~~~~~~~~~~~~~~  356 (735)
                      +|+|+|.+..+.++.       .+.++.+++++|+|++|.++|   ++|+|+|.||++.++.+++|.++..+       +
T Consensus       231 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~k~LkGl~V~~t~~~~~~r~yrI~~i~~~pa~~~~F~~~~~~-------g  303 (861)
T 4f3t_A          231 PVIEFVCEVLDFKSIEEQQKPLTDSQRVKFTKEIKGLKVEITHCGQMKRKYRVCNVTRRPASHQTFPLQQES-------G  303 (861)
T ss_dssp             EHHHHHHHHHTCSSCC---CCCCHHHHHHHHHHHTTCEEEESCC---CCEEEEEEEEEEETTTCEEEEECSS-------S
T ss_pred             cHHHHHHHHhcccchhhhccccCHHHHHHHHHHhCCcEEEEeecCCCCceEEEeeCCCCCCCCcEEEeecCC-------C
Confidence            999999987654322       234678899999999999999   56899999999999999999864321       1


Q ss_pred             cceeeeHHHHHHHhcCcccccCCCCCeEecCCCCCCccccccceeEcCCCcccCCCCHHHHHHHHHHHhcChHHHHHHHH
Q 004699          357 QELEITVYDYFVNNRNIDLRYSGDLPCINVGKPKRPTYIPLELCELVSLQRYTKALTNLQRASLVEKSRQKPQERMSVLS  436 (735)
Q Consensus       357 ~~~~iTV~eYf~~~Y~i~L~~~p~lP~l~vg~~~~~~ylP~Elc~v~~~Qr~~~~Ls~~q~~~mi~~s~~~P~eR~~~i~  436 (735)
                      ++.+|||+|||+++|||+|+| |+||||++|+.++++|||||||.|++||+|+++|+++|+++|+++|+..|.+|.+.|.
T Consensus       304 ~~~~iSV~dYFk~kYni~L~~-p~lPll~~g~~~~~~ylP~Elc~i~~gQ~~~~~Lt~~q~s~mik~~~~~P~~R~~~I~  382 (861)
T 4f3t_A          304 QTVECTVAQYFKDRHKLVLRY-PHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIRATARSAPDRQEEIS  382 (861)
T ss_dssp             CEEEEEHHHHHHHHHCCCCSC-TTSEEEEESCTTTTEEEEGGGEEECTTCBCCSCCCHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred             CceeEEHHHHHHHhcCcccCC-CCCceEEecCCCCCccccceeEEeeCCccccccCCHHHHHHHHHHHccCHHHHHHHHH
Confidence            135899999999999999999 9999999998888999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCCchhhhccCceecCcceeeeeeecCCCeeeeCCCc--ccCCCCCccccCCceeeCCcccceEEEEEeCCc-
Q 004699          437 NALKLSKYDNEPMLRSCGISISTNFAQVEGRVLPAPRLKFGNGE--DFSPRNGRWNFNNKKLVQPTKIERWAVVNFSAR-  513 (735)
Q Consensus       437 ~~~~~~~~~~~~~L~~~Gi~I~~~~~~V~gRvL~~P~i~~g~~~--~~~~~~g~Wn~~~~kf~~p~~i~~W~vv~~~~~-  513 (735)
                      ++++.++++.+++|++|||+|+++|++|+||||+||+|.||++.  ...|.+|+|++++++|++|+++++|++++++.. 
T Consensus       383 ~~~~~l~~~~~~~l~~fGi~i~~~~~~v~gRvL~~P~I~y~~~~~~~~~~~~g~W~~~~~~f~~~~~l~~W~vv~~~~~~  462 (861)
T 4f3t_A          383 KLMRSASFNTDPYVREFGIMVKDEMTDVTGRVLQPPSILYGGRNKAIATPVQGVWDMRNKQFHTGIEIKVWAIACFAPQR  462 (861)
T ss_dssp             HHHHHHCGGGCHHHHHTTCEECSSCEEEEEEECCCCCEECCSSSCCEECCBTTBCCCTTCCCTBCCCBCCEEEEECSCTT
T ss_pred             HHHHHhcCCCchHHHHCCCEEeCCeeEEEEEEecCceEEecCCcccccCCCCCceeccCCEEccCcccceeEEEEecCcc
Confidence            99999988888999999999999999999999999999999753  357889999999999999999999999998642 


Q ss_pred             -c---cHHHHHHHHHHHhhhcCCcCCC-CccccccCCcccCCChhHHHHHHHHHHHhhCCCCCeEEEEEcCCCCCCCchh
Q 004699          514 -C---DIRSLVRDLIKCGEMKGILIDQ-PFDVFEESPQFRRSSPVVRVEKMFDEIQSKLPGAPQFLLCLLPERKNSDLYG  588 (735)
Q Consensus       514 -~---~~~~f~~~L~~~~~~~G~~i~~-p~~v~~~~~~~~~~~~~~~ve~~~~~i~~~~~~~~~~vl~Ilp~~k~~~~Y~  588 (735)
                       +   .++.|++.|.+.|+.+||.+.. |..+....       ..++++.+|+.+++.. .+++|||||||+ + .++|+
T Consensus       463 ~~~~~~~~~f~~~L~~~~~~~G~~i~~~p~~~~~~~-------~~~~~~~~~~~l~~~~-~~~qlvl~Ilp~-~-~~~Y~  532 (861)
T 4f3t_A          463 QCTEVHLKSFTEQLRKISRDAGMPIQGQPCFCKYAQ-------GADSVEPMFRHLKNTY-AGLQLVVVILPG-K-TPVYA  532 (861)
T ss_dssp             TSCHHHHHHHHHHHHHHHHHHTCCBCSCCSEEEECC-------SSSSHHHHHHHHHHHS-TTCCEEEEEESS-S-CTHHH
T ss_pred             cccHHHHHHHHHHHHHHHhhCCcccCCCCeEEEecC-------chHHHHHHHHHHHhhc-CCCcEEEEEeCC-C-ccHHH
Confidence             1   5899999999999999999974 43322211       1246788899988764 368999999997 4 58999


Q ss_pred             hhhhhcccccCceeeEeecc---cCCHHHHHHHHHHHhhccCCceeeccccCCCCCCcccCCCEEEEeeeeccCCCCCCC
Q 004699          589 PWKRKNLADFGIVTQCMAPM---RVNDQYLTNVLLKINAKLGGLNSLLAVEHSPSIPIVSKVPTIILGMDVSHGSPGHSD  665 (735)
Q Consensus       589 ~iK~~~~~~~GI~TQci~~~---k~~~q~~~Ni~lKIN~KLGG~n~~l~~~~~~~ip~~~~~~tMIvG~DVsHp~~~~~~  665 (735)
                      .||++||+++||+||||..+   +.++||++||+||||+||||+||.+.+.   ..|.+...+|||||+||+||++++..
T Consensus       533 ~IK~~~~~~~gI~TQcv~~~~~~k~~~q~~~ni~lKiN~KlGG~n~~l~~~---~~~~~~~~~tmiiG~DV~H~~~~~~~  609 (861)
T 4f3t_A          533 EVKRVGDTVLGMATQCVQMKNVQRTTPQTLSNLCLKINVKLGGVNNILLPQ---GRPPVFQQPVIFLGADVTHPPAGDGK  609 (861)
T ss_dssp             HHHHHHHHTSCCEEEEEETHHHHSCCHHHHHHHHHHHHHHTTCBCCEECST---TSCGGGGSCEEEEEEEEECCC----C
T ss_pred             HHHHHhcccCCcceEEEEecccccccHHHHHHHHHHHHHhcCCcceecccc---ccccccCCceEEEEEEecccCCCCCC
Confidence            99999999999999999975   5689999999999999999999998643   24555568999999999999998667


Q ss_pred             CCeEEEEEeccCCCcccceeeEEEecCCceeeccccccccCCCcccchHHHHHHHHHhccCcE
Q 004699          666 IPSIAAVVSSRHWPLISRYRAAVRTQSPKVEMIDSLFKKVSDTEDEGIIRLFYCLTYLRWEVV  728 (735)
Q Consensus       666 ~pSiaavVaS~d~p~~tky~~~~~~Q~~~~E~I~~L~~~~~~~~~~~m~~e~L~~f~~~n~~~  728 (735)
                      .|||||||||+|+ .+++|++.+++|.+++|+|++|.+         |++|+|++|+++|+.+
T Consensus       610 ~pSiaa~vaS~d~-~~~~y~~~~~~Q~~~~E~i~~l~~---------~~~~~L~~~~~~~~~~  662 (861)
T 4f3t_A          610 KPSIAAVVGSMDA-HPNRYCATVRVQQHRQEIIQDLAA---------MVRELLIQFYKSTRFK  662 (861)
T ss_dssp             CCEEEEEEEECSS-SSCCEEEEEEEESTTCCSCTTHHH---------HHHHHHHHHHHHHSCC
T ss_pred             CceEEEEEEEcCC-CcceEEEEEEEcCCCccHHHHHHH---------HHHHHHHHHHHHhCCC
Confidence            8999999999997 899999999999999999999986         9999999999998865
>4f1n_A Kpago; argonaute, RNAI, RNAse H, RNA binding protein-RNA complex; 3.19A {Vanderwaltozyma polyspora} Back     alignment and structure
>1yvu_A Hypothetical protein AQ_1447; RNAse H fold, RNA binding protein, gene regulation; 2.90A {Aquifex aeolicus} SCOP: b.34.14.1 c.55.3.10 PDB: 2f8s_A 2f8t_A 2nub_A Back     alignment and structure
>1u04_A Argonaute, hypothetical protein PF0537; RNAI, silencing, PIWI, PAZ, RISC, slicer, RNAse H hydrolase-gene regulation complex; 2.25A {Pyrococcus furiosus} SCOP: b.34.14.1 c.55.3.10 PDB: 1z25_A 1z26_A Back     alignment and structure
>3ho1_A Argonaute; argonaute, protein-DNA-RNA complex, nucleic acid binding Pro RNA complex; 2.60A {Thermus thermophilus} PDB: 3dlb_A* 3dlh_A* 3f73_A* 3hm9_A 3hvr_A 3hxm_A* 3hk2_A 3hjf_A Back     alignment and structure
>2yha_A Post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; HET: GOL; 1.85A {Neurospora crassa} PDB: 2xdy_A Back     alignment and structure
>2yhb_A QDE-2, post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; 3.65A {Neurospora crassa} Back     alignment and structure
>4g0o_A Protein argonaute 5; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.19A {Arabidopsis thaliana} Back     alignment and structure
>4g0x_A Protein argonaute 1; MID domain, small RNA 5' nucleotide recognition, gene regula; 1.35A {Arabidopsis thaliana} PDB: 4g0q_A* 4g0p_A 4g0y_A* 4g0z_A* 3vna_A 3vnb_A Back     alignment and structure
>4g0m_A Protein argonaute 2; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.31A {Arabidopsis thaliana} Back     alignment and structure
>2xfm_A MIWI, PIWI-like protein 1; RNA-protein complex, differentiation, RNA interference; HET: OMU; NMR {Mus musculus} Back     alignment and structure
>3luc_A Protein argonaute-2; MID domain, ribonucleoprotein, RNA-binding, RNA-mediated GEN silencing, translation regulation, RNA binding protein; 1.69A {Homo sapiens} PDB: 3lud_A* 3lug_A 3luh_A 3luj_A* 3luk_A 3qx8_A* 3qx9_A* Back     alignment and structure
>3qir_A PIWI-like protein 2; structural genomics consortium, SGC, PAZ domain, RNAI, RNA B RNA binding protein; 2.45A {Homo sapiens} PDB: 3o7x_A Back     alignment and structure
>3mj0_A Protein argonaute-2; argonaut, PAZ domain, 3'-END 2'-O-methylated ssRNA, RNA-RNA protein complex; HET: OMU; 2.31A {Drosophila melanogaster} SCOP: b.34.14.1 PDB: 1t2r_A 1t2s_A Back     alignment and structure
>3o7v_X PIWI-like protein 1; PIWI, RNA silencing, PI-RNA, HIWI1, HILI, PAZ domain, RNA BI protein; HET: OMU; 2.10A {Homo sapiens} PDB: 2l5c_A 2l5d_A 3o3i_X 3o6e_X* Back     alignment and structure
>2w42_A PIWI, putative uncharacterized protein; RNAI, RISC, argonaute, PIWI domain, protein/DNA complex; 1.90A {Archaeoglobus fulgidus} PDB: 1ytu_A 2bgg_A 1w9h_A Back     alignment and structure
>1r6z_P Chimera of maltose-binding periplasmic protein AN argonaute 2; deviant OB fold, RNAI, gene regulation; HET: MAL; 2.80A {Escherichia coli} SCOP: b.34.14.1 c.94.1.1 Back     alignment and structure
>2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 735
d1si2a_126 b.34.14.1 (A:) Eukaryotic translation initiation f 4e-29
d1yvua2 392 c.55.3.10 (A:315-706) Argonaute homologue Aq_1447 2e-28
d1w9ha1 316 c.55.3.10 (A:93-408) Hypothetical protein AF1318 { 6e-22
d1t2sa_123 b.34.14.1 (A:) Argonaute 2 {Fruit fly (Drosophila 1e-20
d1u04a2 447 c.55.3.10 (A:324-770) Argonaute homologue PF0537 { 2e-13
d1u04a1322 b.34.14.1 (A:2-323) Argonaute homologue PF0537 {Py 6e-06
>d1si2a_ b.34.14.1 (A:) Eukaryotic translation initiation factor 2C 1, EIF2C1 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 Back     information, alignment and structure

class: All beta proteins
fold: SH3-like barrel
superfamily: PAZ domain
family: PAZ domain
domain: Eukaryotic translation initiation factor 2C 1, EIF2C1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  110 bits (275), Expect = 4e-29
 Identities = 33/132 (25%), Positives = 63/132 (47%), Gaps = 18/132 (13%)

Query: 286 GPVVDFLIANQNVRDP-------FSIDWAKAKRTLKNLRIKTI---TSNQEYKITGLSEK 335
            PV++F+    ++R+              +  + +K L+++        ++Y++  ++ +
Sbjct: 3   QPVIEFMCEVLDIRNIDEQPKPLTDSQRVRFTKEIKGLKVEVTHCGQMKRKYRVCNVTRR 62

Query: 336 LCKEQMFSLKQKNVKDDDGEVQELEITVYDYFVNNRNIDLRYSGDLPCINVGKPKRPTYI 395
               Q F L            Q +E TV  YF    N+ L+Y   LPC+ VG+ ++ TY+
Sbjct: 63  PASHQTFPL-------QLESGQTVECTVAQYFKQKYNLQLKYP-HLPCLQVGQEQKHTYL 114

Query: 396 PLELCELVSLQR 407
           PLE+C +V+ QR
Sbjct: 115 PLEVCNIVAGQR 126
>d1yvua2 c.55.3.10 (A:315-706) Argonaute homologue Aq_1447 {Aquifex aeolicus [TaxId: 63363]} Length = 392 Back     information, alignment and structure
>d1w9ha1 c.55.3.10 (A:93-408) Hypothetical protein AF1318 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 316 Back     information, alignment and structure
>d1t2sa_ b.34.14.1 (A:) Argonaute 2 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 123 Back     information, alignment and structure
>d1u04a2 c.55.3.10 (A:324-770) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]} Length = 447 Back     information, alignment and structure
>d1u04a1 b.34.14.1 (A:2-323) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]} Length = 322 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query735
d1u04a1322 Argonaute homologue PF0537 {Pyrococcus furiosus [T 100.0
d1u04a2 447 Argonaute homologue PF0537 {Pyrococcus furiosus [T 99.91
d1yvua2 392 Argonaute homologue Aq_1447 {Aquifex aeolicus [Tax 99.91
d1si2a_126 Eukaryotic translation initiation factor 2C 1, EIF 99.91
d1w9ha1 316 Hypothetical protein AF1318 {Archaeoglobus fulgidu 99.89
d1t2sa_123 Argonaute 2 {Fruit fly (Drosophila melanogaster) [ 99.88
>d1u04a1 b.34.14.1 (A:2-323) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
class: All beta proteins
fold: SH3-like barrel
superfamily: PAZ domain
family: PAZ domain
domain: Argonaute homologue PF0537
species: Pyrococcus furiosus [TaxId: 2261]

Probab=100.00  E-value=3.4e-38  Score=322.88  Aligned_cols=285  Identities=11%  Similarity=0.009  Sum_probs=207.9

Q ss_pred             EEEEEeeEEEEEecCCCceEEEEEEEEeeCCCCCCCCCcchHHHHHHHHHHHhhhcCCCCeeecCCCceeecCCCCCCce
Q 004699           63 RISLLTNHFKVNVTNVEGHFYHYSVSVSYEDGRPVDGKGAGRKVIDRVQETYNAELDGKDFAYDGEKSLFTVGPLPRNKL  142 (735)
Q Consensus        63 ~i~L~tN~f~v~~~~~~~~~y~Y~V~i~~~~~~~v~~k~~~r~ii~~l~~~~~~~~~~~~~~yDG~~~l~s~~~L~~~~~  142 (735)
                      ++.+.+|+|+|..+.-...+|||+|+|    +|++++++++..++..+.+     ..|..++|||. .||++.+|+.+..
T Consensus         1 ~~~~~~N~~ki~~~~~p~~lyqYrV~f----~P~~e~~~~r~~ll~~h~~-----~~G~~~~fDg~-~l~~~kkL~~~~e   70 (322)
T d1u04a1           1 KAIVVINLVKINKKIIPDKIYVYRLFN----DPEEELQKEGYSIYRLAYE-----NVGIVIDPENL-IIATTKELEYEGE   70 (322)
T ss_dssp             EEEEEBSEEEBCGGGSCSCEEEEEC----------------CCHHHHHHH-----TTEEEEETTTT-EEEESSCCCCSSC
T ss_pred             CeEEEEEEEEeecccCCceeEEEEecC----CChhhhHHHHHHHHHHHHH-----hcCeEEecCCc-EEecccccCccee
Confidence            467899999996432123599999999    6788899888888877653     44667889998 8999999986421


Q ss_pred             eEEEEecccccccCCCCCCCCCCCCCCCCccccccCCCCCceEEEEEEeeeeeChHHHHHHHcCCCCcchHHHHHHHHHH
Q 004699          143 EFTVVLEDISSNRNNGNASPDAHGSPNGNDRKRLRRPYRSKTFKVEISFAAKIPIQAIANALRGQESENSQEAFRVLDII  222 (735)
Q Consensus       143 ~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~I~~~~~i~~~~l~~~l~g~~~~~~~~~i~~lnii  222 (735)
                                                                +.++++...+...             .+.+++|++|++
T Consensus        71 ------------------------------------------~~~~~~~~~~~~~-------------~~~~~~q~~Nil   95 (322)
T d1u04a1          71 ------------------------------------------FIPEGEISFSELR-------------NDYQSKLVLRLL   95 (322)
T ss_dssp             ------------------------------------------CEEEEEECGGGSC-------------HHHHHHHHHHHH
T ss_pred             ------------------------------------------EEEEEEEEcccCC-------------CcHHHHHHHHHH
Confidence                                                      1233333332222             356789999999


Q ss_pred             HhcccccccceecccccccCCCCCccccCCcEEEeecceEEEEeeCCeeEEeeecceeeeecCCcHHHHHHHhcCC----
Q 004699          223 LRQHAAKQGCLLVRQSFFHNDPKNFADVGGGVLGCRGFHSSFRTTQGGLSLNIDVSTTMIIQPGPVVDFLIANQNV----  298 (735)
Q Consensus       223 lr~~~~~~~~~~vgr~ff~~~~~~~~~l~~G~e~~~Gf~~Svr~~~~gl~LniDvs~~~F~~~~~l~d~l~~~~~~----  298 (735)
                      +|.++...++.++||+||++..      ..++++|+||.+||+..+++++|++|++|++ .|..||+|+|.+..+.    
T Consensus        96 ~r~~m~~l~l~~iGRnyydp~~------~~~levwPGy~TSI~q~E~~ilLc~disHKV-mR~~Tvld~l~~~~~~~~~~  168 (322)
T d1u04a1          96 KENGIGEYELSKLLRKFRKPKT------FGDYKVIPSVEMSVIKHDEDFYLVIHIIHQI-QSMKTLWELVNKDPKELEEF  168 (322)
T ss_dssp             HHTTCSHHHHHHHHTTTSCCEE------ETTEEEEEEEEEEEEECSSCEEEEEEEEEEE-EESSCHHHHTTTCHHHHHHH
T ss_pred             HHHHhhhcceeeeccccCCCCC------ccceEEcCCeeeeehhhcCceEEEEEeeeeE-eehhhHHHHHHHHHHhhhhh
Confidence            9999998899999999998753      2578999999999999999999999999999 7999999999654210    


Q ss_pred             -----CCCCchhHHHHHHHhcCcEEEEEecCceEEEe---ccCccccccceeecccCCCCCCCCCccceeeeHHHHHHHh
Q 004699          299 -----RDPFSIDWAKAKRTLKNLRIKTITSNQEYKIT---GLSEKLCKEQMFSLKQKNVKDDDGEVQELEITVYDYFVNN  370 (735)
Q Consensus       299 -----~~~~~~~~~~~~~~Lkgl~V~t~~~nr~~~I~---gi~~~~~~~~~F~~~~~~~~~~~~~~~~~~iTV~eYf~~~  370 (735)
                           +.... -...+.+.|.|..|.|.|||++|+++   +++++.++..+|..+             ..+|+.|||+++
T Consensus       169 ~~~~~~~~~~-~~~~~~k~lvG~iVLT~YNNkTy~~di~~dvd~~~~p~~t~~~~-------------~~~s~ieYYk~~  234 (322)
T d1u04a1         169 LMTHKENLML-KDIASPLKTVYKPCFEEYTKKPKLDHNQEIVKYWYNYHIERYWN-------------TPEAKLEFYRKF  234 (322)
T ss_dssp             HHHSTTTCEE-EETTSTTCCEEEECBCTTSSCBCEECCHHHHHHHHHHHHHHHCC-------------SHHHHHHHHHHH
T ss_pred             hhhhhhhhHH-HHhhhhhheeceEEEeccCCcceecchhhcCCcccCccceeccC-------------CcccHHHHHHHh
Confidence                 01000 01234567899999999999998665   456655665566432             257999999999


Q ss_pred             cCcccccCCCCCeEecCC-------CCCCccccccceeEcCCCcccCCCCHHHHH----HHHHHHhcChHHHHHHHHHHH
Q 004699          371 RNIDLRYSGDLPCINVGK-------PKRPTYIPLELCELVSLQRYTKALTNLQRA----SLVEKSRQKPQERMSVLSNAL  439 (735)
Q Consensus       371 Y~i~L~~~p~lP~l~vg~-------~~~~~ylP~Elc~v~~~Qr~~~~Ls~~q~~----~mi~~s~~~P~eR~~~i~~~~  439 (735)
                      ||+   + .+||+|....       ....+||+||||+++|       |++++|+    +|..+++..|.+|.+.+.+++
T Consensus       235 Yni---D-~~QPlLvs~~k~~~~~~~~~~i~LiPELc~lTG-------ltD~mR~dlMk~la~~Trl~P~~R~~~l~~f~  303 (322)
T d1u04a1         235 GQV---D-LKQPAILAKFASKIKKNKNYKIYLLPQLVVPTY-------NAEQLESDVAKEILEYTKLMPEERKELLENIL  303 (322)
T ss_dssp             CSC---C-TTSCEEEEEESCC-----CCCEEECTTTEEEEE-------EGGGC----CCHHHHHHCCCHHHHHHHHHHHH
T ss_pred             cCC---C-CCCceEEEecccccCCCCceEEEEchHhhhhcC-------CcHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence            997   4 7899998621       2346999999999998       4666655    789999999999999999999


Q ss_pred             HhcCC
Q 004699          440 KLSKY  444 (735)
Q Consensus       440 ~~~~~  444 (735)
                      +.++.
T Consensus       304 ~~l~~  308 (322)
T d1u04a1         304 AEVDS  308 (322)
T ss_dssp             HHCCC
T ss_pred             HHHHh
Confidence            99864
>d1u04a2 c.55.3.10 (A:324-770) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1yvua2 c.55.3.10 (A:315-706) Argonaute homologue Aq_1447 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1si2a_ b.34.14.1 (A:) Eukaryotic translation initiation factor 2C 1, EIF2C1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w9ha1 c.55.3.10 (A:93-408) Hypothetical protein AF1318 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1t2sa_ b.34.14.1 (A:) Argonaute 2 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure