Citrus Sinensis ID: 004703

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-----
MTGMAVPTIALYASPPSSVCSATHQINAHTTYDFDLNSRSSASTSSTAAAPSSQKQTIGGLSCLFSSSSEMGSYRSEELKELSSSFGYAYSPSKLCGSSSSLKRDQSPVSVFQGPVSCSGNGSYSYSRSSPPIRTAREKADVNVNFHTFFKGSSGLFNGFVRNALGSCVDYDSSSFRVHNGDAVLNVGSSAALIDELTFNMEDNIVEGNLETYAKEFLANAQLKHKIFREDFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMADARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVECFDEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQAEFGFAAHWRYKEGDCQHSSFVLQMVEWARWVLTWQCEAMSKDRSCVGNGDSIKPPCTFPSHADDCPFSYKPQCSHDGPVFVIMIENDKMSVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTPAIPDKSLTEYREEIQRMYERGLAVSNTGPAVTSMVGSRS
ccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccccccccHHcHHHHHHHHHHccccHHHHHHHHHccccccccccHHHHHHHHcHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHcccEEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEcccccccHHHHHHHHHHcccccccHHccEEEEEEEccHHHHHHHHHHHHcccccccccccccccccccccccccccEEEcccccEEEEEEccHHHHHHHHHHHcHHHccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccEEEEEccccccEEEEccccccccHHHHHHccccccccccccccccccEEEEccccccccccccccccEEEEEEccccccccHHHHHHHHHHHcccEEccccccccccccccc
ccccEEcEEEEEcccccccccccccccccccccccccccccccccccccccccccccEccccHccccccccccccHHHHHccccccccccccccccccccccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccccccccHHHHHccccccccccccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccccccccEEEcHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHcHHHHHHHccccccccEEEccHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccccccccHEEccccccccccccEEEEccccccEEEEEEcHHHHHHHHHHHHEEHHHHccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHcHcccccccccccEEEEEccccccEEEEEccccccccHHHHHcccccccccccEEEEEcccccccEcEEEcccccEcccccEEEEEEccccccccccHHHHHHHHccccEEEEcHHHHHHHHHHcc
mtgmavptialyasppssvcsathqinahttydfdlnsrssastsstaaapssqkqtigglsclfssssemgsyRSEELKELSssfgyayspsklcgsssslkrdqspvsvfqgpvscsgngsysysrssppirtarekadvnvnfhtffkgssglfNGFVRNALgscvdydsssfrvhngdavlnvgssaALIDELTFNMEDNIVEGNLETYAKEFLANAQLKHKIFREDFVIKAFYEAERAhrgqmrasgdpylLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMADARAVLIKLADRLHNmmtldalplckrQRFAKETLEIFVPLANRLGISTWKVQLENLcfkhlnpdqhtELSSKLVECFDEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENEEDCYQALRVVHQLWAEvpgkmkdyitrpkfngyqslhtvvtgeglvplEVQIRTKEMHLQAEFGFAAhwrykegdcqhsSFVLQMVEWARWVLTWQCeamskdrscvgngdsikppctfpshaddcpfsykpqcshdgpvFVIMIENdkmsvqefptsstVMDLLERagrgssrwspygfplkeelrprlnhkavgdprcklkmgdvveltpaipdkslTEYREEIQRMYERGlavsntgpavtsmvgsrs
MTGMAVPTIALYASPPSSVCSATHQINAHTTYDFDLNSRSSASTSStaaapssqkqtiggLSCLFSSSSEMGSYRSEELKELSSSFGYAYSPSKLCGSSSSLKRDQSPVSVFqgpvscsgngsysysrsspPIRTAREKADVNVNFHTFFKGSSGLFNGFVRNALGSCVDYDSSSFRVHNGDAVLNVGSSAALIDELTFNMEDNIVEGNLETYAKEFLANAQLKHKIFREDFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVEGVSKLSQlsklarenntasktveadrLHTMFLAMADARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVECFDEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQAEFGFAAHWRYKEGDCQHSSFVLQMVEWARWVLTWQCEAMSKDRSCVGNGDSIKPPCTFPSHADDCPFSYKPQCSHDGPVFVIMIENDKMSVQEFPTSSTVMDLLERAgrgssrwspygfplkeelrprlnhkavgdprcklkmgdvveltpaipdkslteYREEIQRMYerglavsntgpavtsmvgsrs
MTGMAVPTIALYASPPSSVCSATHQINAHTTYDFDLNsrssastsstaaapssQKQTIGGLSCLFssssemgsyrseeLKELSSSFGYAYspsklcgsssslkRDQSPVSVFQGPVscsgngsysysrssPPIRTAREKADVNVNFHTFFKGSSGLFNGFVRNALGSCVDYDSSSFRVHNGDAVLNVGSSAALIDELTFNMEDNIVEGNLETYAKEFLANAQLKHKIFREDFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMADARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVECFDEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQAEFGFAAHWRYKEGDCQHSSFVLQMVEWARWVLTWQCEAMSKDRSCVGNGDSIKPPCTFPSHADDCPFSYKPQCSHDGPVFVIMIENDKMSVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTPAIPDKSLTEYREEIQRMYERGLAVSNTGPAVTSMVGSRS
********IALY*******CSATHQINAHTTYD***********************************************************************************************************DVNVNFHTFFKGSSGLFNGFVRNALGSCVDYDSSSFRVHNGDAVLNVGSSAALIDELTFNMEDNIVEGNLETYAKEFLANAQLKHKIFREDFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVEGVSKLS***************VEADRLHTMFLAMADARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVECFDEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQAEFGFAAHWRYKEGDCQHSSFVLQMVEWARWVLTWQCEAMSKDRSCVGNGDSIKPPCTFPSHADDCPFSYKPQCSHDGPVFVIMIENDKM***************************YGF**************VGDPRCKLKMGDVVELTPAI*************************************
****AVPTIALYASPPSSVCSATHQINA***********************************LFS*********************************************************************************************FVRNALGSCV***********************************IVEGNLETYAKEFLANAQLKHKIFREDFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVEGVSKLSQLSKLARE******TVEADRLHTMFLAMADARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVECFDEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQAEFGFAAHWR****************EWARWVLTWQCEAMS***SCVGNGDSIKPPCTFPSHADDCPFSYKPQCSHDGPVFVIMIENDKMSVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTPAIPDKSLTEYREEIQRMYERG******************
MTGMAVPTIALYASPPSSVCSATHQINAHTTYDFDLN********************IGGLSCLFSS****************SSFGYAYSPSK****************VFQGPVSCSG*************RTAREKADVNVNFHTFFKGSSGLFNGFVRNALGSCVDYDSSSFRVHNGDAVLNVGSSAALIDELTFNMEDNIVEGNLETYAKEFLANAQLKHKIFREDFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMADARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVECFDEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQAEFGFAAHWRYKEGDCQHSSFVLQMVEWARWVLTWQCEAMSKDRSCVGNGDSIKPPCTFPSHADDCPFSYKPQCSHDGPVFVIMIENDKMSVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTPAIPDKSLTEYREEIQRMYERGLAVSNTGP**********
**GMAVPTIALYASPPSSVCSA***********************************************************************************QSPVSVF**************************************KGSSGLFNGFVRNALGSCVDYDSSSFRVH**********SAALIDELTFNMEDNIVEGNLETYAKEFLANAQLKHKIFREDFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMADARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVECFDEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQAEFGFAAHWRYKEGDCQHSSFVLQMVEWARWVLTWQCEAM***********SIKPPCTFPSHADDCPFSYKPQCSHDGPVFVIMIENDKMSVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTPAIPDKSLTEYREEIQRMYERGLAVSNTGPAVTSM***RS
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MTGMAVPTIALYASPPSSVCSATHQINAHTTYDFDLNSRSSASTSSTAAAPSSQKQTIGGLSCLFSSSSEMGSYRSEELKELSSSFGYAYSPSKLCGSSSSLKRDQSPVSVFQGPVSCSGNGSYSYSRSSPPIRTAREKADVNVNFHTFFKGSSGLFNGFVRNALGSCVDYDSSSFRVHNGDAVLNVGSSAALIDELTFNMEDNIVEGNLETYAKEFLANAQLKHKIFREDFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMADARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVECFDEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQAEFGFAAHWRYKEGDCQHSSFVLQMVEWARWVLTWQCEAMSKDRSCVGNGDSIKPPCTFPSHADDCPFSYKPQCSHDGPVFVIMIENDKMSVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTPAIPDKSLTEYREEIQRMYERGLAVSNTGPAVTSMVGSRS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query735 2.2.26 [Sep-21-2011]
P74007 760 Probable guanosine-3',5'- N/A no 0.469 0.453 0.448 3e-77
O87331 760 GTP pyrophosphokinase OS= yes no 0.461 0.446 0.433 1e-74
O54408 734 GTP pyrophosphokinase OS= yes no 0.469 0.470 0.418 4e-73
Q8CS97 729 GTP pyrophosphokinase OS= yes no 0.436 0.440 0.419 3e-72
Q5HNR8 729 GTP pyrophosphokinase OS= yes no 0.436 0.440 0.419 3e-72
O52177 757 GTP pyrophosphokinase OS= yes no 0.459 0.446 0.410 6e-72
P52560 847 GTP pyrophosphokinase OS= yes no 0.457 0.396 0.417 1e-71
O85709 841 GTP pyrophosphokinase OS= N/A no 0.457 0.399 0.413 3e-70
Q6GG70 736 GTP pyrophosphokinase OS= yes no 0.436 0.436 0.410 1e-69
P0A0E9 736 GTP pyrophosphokinase OS= yes no 0.436 0.436 0.410 1e-69
>sp|P74007|SPOT_SYNY3 Probable guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=spoT PE=3 SV=1 Back     alignment and function desciption
 Score =  290 bits (742), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 160/357 (44%), Positives = 222/357 (62%), Gaps = 12/357 (3%)

Query: 232 FVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLS 291
            + +AF  A   H  Q R SG+PY+ H V  A LL  +G +  ++AAG LHD ++D  +S
Sbjct: 53  LICRAFCFAYDLHAQQRRKSGEPYIAHPVAVAGLLRDLGGDEAMIAAGFLHDVVEDTDIS 112

Query: 292 YDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAVLI 350
            + I   FG   A LVEGV+KLS+       N +++   +A+    MFLAMA D R +++
Sbjct: 113 IEQIEALFGEETASLVEGVTKLSKF------NFSSTTEHQAENFRRMFLAMAKDIRVIVV 166

Query: 351 KLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQH 410
           KLADRLHNM TLDAL   K++R A+ET +IF PLANRLGI  +K +LE+L FK+L PD +
Sbjct: 167 KLADRLHNMRTLDALSPEKQRRIARETKDIFAPLANRLGIWRFKWELEDLSFKYLEPDSY 226

Query: 411 TELSSKLVECFD--EAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKLTM 468
            ++ S +VE     E+ + +  + L   L+D+ I    L GR K LY I+ KM  +    
Sbjct: 227 RKIQSLVVEKRGDRESRLETVKDMLRFRLRDEGIEHFELQGRPKHLYGIYYKMTSQDKAF 286

Query: 469 DEIHDIYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEG 528
           +EI+DI  LR+IVE++ +CY+AL VVH ++  +PG+ KDYI  PK N YQSLHT V G  
Sbjct: 287 EEIYDIAALRIIVESKGECYRALSVVHDVFKPIPGRFKDYIGLPKPNRYQSLHTTVLGLT 346

Query: 529 LVPLEVQIRTKEMHLQAEFGFAAHWRYKEGDCQHSSFVLQMVE---WARWVLTWQCE 582
             PLE+QIRT+EMH  AE+G AAHW+YKE     ++ +    E   W R +L WQ +
Sbjct: 347 SRPLEIQIRTEEMHHVAEYGIAAHWKYKESGGSENATLTSTDEKFTWLRQLLDWQSD 403
In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. This enzyme catalyzes the degradation of ppGpp into GDP. It may also be capable of catalyzing the synthesis of ppGpp.
Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)
EC: 3EC: .EC: 1EC: .EC: 7EC: .EC: 2
>sp|O87331|RELA_CORGL GTP pyrophosphokinase OS=Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 / LMG 3730 / NCIMB 10025) GN=relA PE=3 SV=2 Back     alignment and function description
>sp|O54408|RELA_BACSU GTP pyrophosphokinase OS=Bacillus subtilis (strain 168) GN=relA PE=3 SV=3 Back     alignment and function description
>sp|Q8CS97|RELA_STAES GTP pyrophosphokinase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=relA PE=3 SV=1 Back     alignment and function description
>sp|Q5HNR8|RELA_STAEQ GTP pyrophosphokinase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=relA PE=3 SV=1 Back     alignment and function description
>sp|O52177|RELA_MYXXA GTP pyrophosphokinase OS=Myxococcus xanthus GN=relA PE=3 SV=1 Back     alignment and function description
>sp|P52560|RELA_STRCO GTP pyrophosphokinase OS=Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145) GN=relA PE=3 SV=1 Back     alignment and function description
>sp|O85709|RELA_STRAT GTP pyrophosphokinase OS=Streptomyces antibioticus GN=relA PE=3 SV=1 Back     alignment and function description
>sp|Q6GG70|RELA_STAAR GTP pyrophosphokinase OS=Staphylococcus aureus (strain MRSA252) GN=relA PE=3 SV=1 Back     alignment and function description
>sp|P0A0E9|RELA_STAAW GTP pyrophosphokinase OS=Staphylococcus aureus (strain MW2) GN=relA PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query735
224054061716 predicted protein [Populus trichocarpa] 0.948 0.973 0.751 0.0
225442114724 PREDICTED: GTP pyrophosphokinase-like [V 0.968 0.983 0.741 0.0
224070802737 predicted protein [Populus trichocarpa] 0.972 0.970 0.741 0.0
356558920715 PREDICTED: uncharacterized protein LOC10 0.955 0.981 0.731 0.0
33637487718 RSH2 [Nicotiana tabacum] 0.970 0.993 0.727 0.0
356519788714 PREDICTED: uncharacterized protein LOC10 0.953 0.981 0.730 0.0
15081594721 RSH-like protein [Capsicum annuum] 0.960 0.979 0.713 0.0
37196706729 RelA-SpoT like protein PsRSH1 [Pisum sat 0.956 0.964 0.705 0.0
449461673733 PREDICTED: GTP pyrophosphokinase-like [C 0.964 0.967 0.694 0.0
357514019726 GTP pyrophosphokinase [Medicago truncatu 0.959 0.971 0.698 0.0
>gi|224054061|ref|XP_002298089.1| predicted protein [Populus trichocarpa] gi|222845347|gb|EEE82894.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score = 1090 bits (2819), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 551/733 (75%), Positives = 618/733 (84%), Gaps = 36/733 (4%)

Query: 4   MAVPTIALYASPPSSVCSATH--QINAHTTYDFDLNSRSSASTSSTAAAPSSQKQTIGGL 61
           MAVPTIALYASPPSSVCS  +  QINAH  YDF+LNSRSS++ SS+A++  SQK  +GGL
Sbjct: 1   MAVPTIALYASPPSSVCSTPYPCQINAHANYDFELNSRSSSTASSSASS--SQKPIVGGL 58

Query: 62  SCLFSSSS-----------EMGSY-RSEELKELSSSFGYAYSPSKLCGSSSSLKRDQSPV 109
           S LFSS +           E+G + R +ELKELSSSF   Y+PSK C + SS+KRDQSPV
Sbjct: 59  SRLFSSPAVKHASFSGDREELGWHDRGDELKELSSSF--CYTPSK-CLAGSSIKRDQSPV 115

Query: 110 SVFQGPVSCSGNGSYSYSRSSPPIRTAREKADVNVNFHT-----FFKGSSGLFNGFVRNA 164
           SV QG VSCS         SSPP R ARE++  +V F +     F  G++GLFNGFVRNA
Sbjct: 116 SVLQGQVSCS---------SSPPTRIARERSGCDVGFQSSIHGSFRSGANGLFNGFVRNA 166

Query: 165 LGSCVDYDSSSFRVHNGDAVLNVGSSAALIDELTFNMEDNIVEGNLETYAKEFLANAQLK 224
           LGSCVDYDS SF VHN    ++  SS+ ++DELTF+MED+ V+ N E YAKE L  AQ +
Sbjct: 167 LGSCVDYDSPSFEVHNNG--IDEDSSSVVVDELTFSMEDSCVDANYEPYAKELLFGAQSR 224

Query: 225 HKIFREDFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDT 284
           H IF +DFVIKAF+EAE+AHRGQMRASGDPYL HCVETA+LLA IGANSTVVAAGLLHDT
Sbjct: 225 HTIFCDDFVIKAFHEAEKAHRGQMRASGDPYLQHCVETAVLLAIIGANSTVVAAGLLHDT 284

Query: 285 LDDAFLSYDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMAD 344
           LDD+F+SYD+IF+TFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMAD
Sbjct: 285 LDDSFISYDHIFKTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMAD 344

Query: 345 ARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKH 404
           ARAVLIKLADRLHNMMTLDALPL K+QRFAKET EIF PLANRLGIS+WK QLENLCFKH
Sbjct: 345 ARAVLIKLADRLHNMMTLDALPLVKQQRFAKETSEIFAPLANRLGISSWKEQLENLCFKH 404

Query: 405 LNPDQHTELSSKLVECFDEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKK 464
           LNPDQH +LS++LV+ FDEAM+ SA EKLE+AL D+ IS+  L GRHKSLYS +CKMLKK
Sbjct: 405 LNPDQHKDLSARLVDSFDEAMIASAKEKLEKALTDEAISY-DLSGRHKSLYSTYCKMLKK 463

Query: 465 KLTMDEIHDIYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVV 524
           KL MD+IHDI+GLRLIVEN EDCY+ALRVV +LW+EVPGK KDYI  PKFNGY+SLHTVV
Sbjct: 464 KLNMDQIHDIHGLRLIVENNEDCYRALRVVQRLWSEVPGKFKDYINNPKFNGYRSLHTVV 523

Query: 525 TGEGLVPLEVQIRTKEMHLQAEFGFAAHWRYKEGDCQHSSFVLQMVEWARWVLTWQCEAM 584
            GEG VPLEVQIRT+EMHLQAEFGFAAHWRYKEGD +HSSFVLQMVEWARWV+TWQCE M
Sbjct: 524 MGEGTVPLEVQIRTREMHLQAEFGFAAHWRYKEGDSKHSSFVLQMVEWARWVITWQCETM 583

Query: 585 SKDRSCVGNGDSIKPPCTFPSHADDCPFSYKPQCSHDGPVFVIMIENDKMSVQEFPTSST 644
           SKD S +G GDSIKPPCTFPSH+D CP+SYKP C  DGPVFVIMIE+DKMSVQEFP +ST
Sbjct: 584 SKDHSFIGCGDSIKPPCTFPSHSDGCPYSYKPHCGQDGPVFVIMIESDKMSVQEFPANST 643

Query: 645 VMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTPAIPDKSLT 704
           VMDLLERAGR SSRWSPYGFP+KEELRPRLNH+ V D  CKLKMGDVVELTPAIPDKSL+
Sbjct: 644 VMDLLERAGRTSSRWSPYGFPVKEELRPRLNHRPVYDVTCKLKMGDVVELTPAIPDKSLS 703

Query: 705 EYREEIQRMYERG 717
           +YREEIQRMYERG
Sbjct: 704 DYREEIQRMYERG 716

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225442114|ref|XP_002273796.1| PREDICTED: GTP pyrophosphokinase-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|224070802|ref|XP_002303242.1| predicted protein [Populus trichocarpa] gi|222840674|gb|EEE78221.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356558920|ref|XP_003547750.1| PREDICTED: uncharacterized protein LOC100787301 [Glycine max] Back     alignment and taxonomy information
>gi|33637487|gb|AAQ23899.1| RSH2 [Nicotiana tabacum] Back     alignment and taxonomy information
>gi|356519788|ref|XP_003528551.1| PREDICTED: uncharacterized protein LOC100789399 [Glycine max] Back     alignment and taxonomy information
>gi|15081594|gb|AAK82651.1| RSH-like protein [Capsicum annuum] Back     alignment and taxonomy information
>gi|37196706|dbj|BAC97801.1| RelA-SpoT like protein PsRSH1 [Pisum sativum] Back     alignment and taxonomy information
>gi|449461673|ref|XP_004148566.1| PREDICTED: GTP pyrophosphokinase-like [Cucumis sativus] gi|449528710|ref|XP_004171346.1| PREDICTED: GTP pyrophosphokinase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357514019|ref|XP_003627298.1| GTP pyrophosphokinase [Medicago truncatula] gi|66947621|emb|CAJ00006.1| RelA-SpoT homolog 1 [Medicago truncatula] gi|355521320|gb|AET01774.1| GTP pyrophosphokinase [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query735
TAIR|locus:2088262709 RSH2 "RELA/SPOT homolog 2" [Ar 0.729 0.755 0.787 6.2e-249
TAIR|locus:2014335715 RSH3 "RELA/SPOT homolog 3" [Ar 0.764 0.786 0.753 7.3e-233
UNIPROTKB|Q3A9Z8 716 relA "GTP pyrophosphokinase" [ 0.469 0.481 0.452 1.7e-73
TIGR_CMR|CHY_2223 716 CHY_2223 "GTP pyrophosphokinas 0.469 0.481 0.452 1.7e-73
TIGR_CMR|BA_4637 727 BA_4637 "GTP pyrophosphokinase 0.469 0.474 0.431 1.8e-72
TIGR_CMR|DET_0005 728 DET_0005 "GTP pyrophosphokinas 0.469 0.473 0.438 4.4e-68
TIGR_CMR|GSU_2236 716 GSU_2236 "GTP pyrophosphokinas 0.466 0.479 0.415 1.2e-67
UNIPROTKB|P0AG24 702 spoT "guanosine 3'-diphosphate 0.468 0.490 0.423 1.8e-64
TIGR_CMR|CPS_4973 703 CPS_4973 "guanosine-3,5-bis(di 0.473 0.495 0.422 2e-63
UNIPROTKB|P66014 738 relA "Bifunctional (p)ppGpp sy 0.463 0.462 0.397 3.3e-63
TAIR|locus:2088262 RSH2 "RELA/SPOT homolog 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2197 (778.4 bits), Expect = 6.2e-249, Sum P(2) = 6.2e-249
 Identities = 425/540 (78%), Positives = 466/540 (86%)

Query:   188 GSSAALIDELTFNMEDNIVEGNLETYAKEFLANAQLKHKIFREDFVIKAFYEAERAHRGQ 247
             GS + L+DELTF ME   V+  ++ YA++ L  AQL+HKIF ++ VIKAFYEAE+AHRGQ
Sbjct:   170 GSDSVLVDELTFPME---VD-TIKPYARDLLRRAQLRHKIFNDESVIKAFYEAEKAHRGQ 225

Query:   248 MRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLV 307
             MRAS DPYL HCVETAMLLA IGANSTVV AGLLHDT+DD+F+SYDYI R FGAGVADLV
Sbjct:   226 MRASRDPYLQHCVETAMLLANIGANSTVVVAGLLHDTIDDSFMSYDYILRNFGAGVADLV 285

Query:   308 EGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMADARAVLIKLADRLHNMMTLDALPL 367
             EGVSKLSQLSKLARENNTA KTVEADRLHTMFLAMADARAVLIKLADRLHNM TL AL  
Sbjct:   286 EGVSKLSQLSKLARENNTACKTVEADRLHTMFLAMADARAVLIKLADRLHNMKTLYALSP 345

Query:   368 CKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVECFDEAMVT 427
              K+QRFAKETLEIF PLANRLGISTWKVQLENLCFKHL P+QH E+S+ L + FDEAM+T
Sbjct:   346 VKQQRFAKETLEIFAPLANRLGISTWKVQLENLCFKHLYPNQHNEMSTMLEDSFDEAMIT 405

Query:   428 SAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENEEDC 487
             SAIEKLEQALK   IS+ VLCGRHKSLYSI+ KMLKKKLT+DEIHDI+GLRLIV+NE DC
Sbjct:   406 SAIEKLEQALKKAGISYHVLCGRHKSLYSIYSKMLKKKLTVDEIHDIHGLRLIVDNEGDC 465

Query:   488 YQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQAEF 547
             Y+AL VVH LW+EVPGK+KDYIT PKFNGYQSLHTVV   G VPLEVQIRT+EMHLQAEF
Sbjct:   466 YKALGVVHSLWSEVPGKLKDYITHPKFNGYQSLHTVVMDNGTVPLEVQIRTQEMHLQAEF 525

Query:   548 GFAAHWRYKEGDCQHSSFVLQMVEWARWVLTWQCEAMSKDRSCVGNGDSIKPPCTFPSHA 607
             GFAAHWRYKEG C++SSFVLQMVEWARWV+TW CEAMSKDRS + + DSIKPPC FPSH+
Sbjct:   526 GFAAHWRYKEGGCKYSSFVLQMVEWARWVVTWHCEAMSKDRSSISSSDSIKPPCKFPSHS 585

Query:   608 DDCPFSYKPQCSHDGPVFVIMIENDKMSVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLK 667
             +DCP SYKP  S DGPV+VI+IENDKMSVQEFP SSTV DLL RAG GSSRWS YG P K
Sbjct:   586 EDCPASYKPNSSQDGPVYVIVIENDKMSVQEFPASSTVSDLLSRAGPGSSRWSMYGIPAK 645

Query:   668 EELRPRLNHKAVGDPRCKLKMGDVVELTPAIPDKSLTEYREEIQRMYERGLAVSNTGPAV 727
             EELRPRLN   V D + KLKMGDVVELTP IPD+SLTEYREEIQRMY+RGLA S  G  V
Sbjct:   646 EELRPRLNQIPVSDLKWKLKMGDVVELTPTIPDESLTEYREEIQRMYDRGLAFSRPGTMV 705
GO:0003824 "catalytic activity" evidence=IEA
GO:0008081 "phosphoric diester hydrolase activity" evidence=IEA
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0015969 "guanosine tetraphosphate metabolic process" evidence=IEA
GO:0046872 "metal ion binding" evidence=IEA
GO:0008728 "GTP diphosphokinase activity" evidence=IGI
GO:0009611 "response to wounding" evidence=IEP;RCA
GO:0009737 "response to abscisic acid stimulus" evidence=IEP
GO:0007165 "signal transduction" evidence=RCA
GO:0009414 "response to water deprivation" evidence=RCA
GO:0009620 "response to fungus" evidence=RCA
GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA
GO:0009723 "response to ethylene stimulus" evidence=RCA
GO:0009733 "response to auxin stimulus" evidence=RCA
GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA
GO:0009753 "response to jasmonic acid stimulus" evidence=RCA
GO:0042538 "hyperosmotic salinity response" evidence=RCA
TAIR|locus:2014335 RSH3 "RELA/SPOT homolog 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q3A9Z8 relA "GTP pyrophosphokinase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_2223 CHY_2223 "GTP pyrophosphokinase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|BA_4637 BA_4637 "GTP pyrophosphokinase" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
TIGR_CMR|DET_0005 DET_0005 "GTP pyrophosphokinase" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_2236 GSU_2236 "GTP pyrophosphokinase" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
UNIPROTKB|P0AG24 spoT "guanosine 3'-diphosphate 5'-triphosphate 3'-diphosphatase [multifunctional]" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_4973 CPS_4973 "guanosine-3,5-bis(diphosphate) 3-pyrophosphohydrolase" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
UNIPROTKB|P66014 relA "Bifunctional (p)ppGpp synthase/hydrolase relA" [Mycobacterium tuberculosis (taxid:1773)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.7.6LOW CONFIDENCE prediction!
4th Layer2.7.6.5LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.I.9324.1
hypothetical protein (716 aa)
(Populus trichocarpa)
Predicted Functional Partners:
estExt_fgenesh4_pg.C_1870028
hypothetical protein; Hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr). Could [...] (202 aa)
•     • 0.609
eugene3.80240001
Predicted protein (139 aa)
 ••     0.433
gw1.28.724.1
histidine-tRNA ligase (EC-6.1.1.21) (441 aa)
•       0.431
eugene3.143650001
hypothetical protein (163 aa)
      • 0.431

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query735
COG0317 701 COG0317, SpoT, Guanosine polyphosphate pyrophospho 1e-141
TIGR00691 683 TIGR00691, spoT_relA, (p)ppGpp synthetase, RelA/Sp 1e-117
PRK11092 702 PRK11092, PRK11092, bifunctional (p)ppGpp syntheta 7e-92
PRK10872 743 PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophos 5e-67
smart00954111 smart00954, RelA_SpoT, Region found in RelA / SpoT 1e-52
pfam04607116 pfam04607, RelA_SpoT, Region found in RelA / SpoT 7e-52
pfam13328156 pfam13328, HD_4, HD domain 5e-51
cd05399129 cd05399, NT_Rel-Spo_like, Nucleotidyltransferase ( 2e-38
COG2357231 COG2357, COG2357, PpGpp synthetase catalytic domai 5e-13
pfam01966111 pfam01966, HD, HD domain 1e-08
smart00471124 smart00471, HDc, Metal dependent phosphohydrolases 2e-05
cd00077145 cd00077, HDc, Metal dependent phosphohydrolases wi 1e-04
>gnl|CDD|223394 COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription] Back     alignment and domain information 
 Score =  429 bits (1106), Expect = e-141
 Identities = 170/374 (45%), Positives = 233/374 (62%), Gaps = 14/374 (3%)

Query: 213 YAKEFLANAQLKHKIFREDFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGAN 272
             +E L +         +  + KA+Y A +AH GQ R SG+PY+ H +E A +LA +  +
Sbjct: 8   ELEELLDSLATYLPP-VDIELKKAWYYARQAHGGQTRKSGEPYISHPLEVAEILAELHMD 66

Query: 273 STVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEA 332
              +AA LLHDT++D  ++ + I   FG  VA LVEGV+KL ++ +L+     + + ++A
Sbjct: 67  METLAAALLHDTIEDTPVTEELIEEIFGKEVAKLVEGVTKLKKIGQLS-----SEEELQA 121

Query: 333 DRLHTMFLAMA-DARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGIS 391
           + L  M LAM  D R VLIKLADRLHN+ TL  L   KR+R A+ETL+I+ PLA+RLGI 
Sbjct: 122 ENLRKMLLAMVKDIRVVLIKLADRLHNLRTLKNLDEEKRRRIARETLDIYAPLAHRLGIG 181

Query: 392 TWKVQLENLCFKHLNPDQHTELSSKLVE--CFDEAMVTSAIEKLEQALKDKNISFLVLCG 449
             K +LE+L F++L+PDQ+  ++  L E     E  + + + +L + LK   I   V  G
Sbjct: 182 QIKWELEDLSFRYLHPDQYKRIAKLLDEKRLEREQYIENVVSELREELKAAGIKAEVS-G 240

Query: 450 RHKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYI 509
           R K +YSI+ KM KKKL+ DEI+D+  +R+IV+   DCY AL +VH LW  +PG+  DYI
Sbjct: 241 RPKHIYSIYRKMQKKKLSFDEIYDVRAVRIIVDTIPDCYTALGIVHTLWKPIPGEFDDYI 300

Query: 510 TRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQAEFGFAAHWRYKEGDCQHSSFVLQM 569
             PK NGYQSLHT V G    P+EVQIRTKEMH  AE G AAHWRYKEG     S   + 
Sbjct: 301 ANPKPNGYQSLHTTVIGPEGKPVEVQIRTKEMHEIAELGVAAHWRYKEG----GSAYEEK 356

Query: 570 VEWARWVLTWQCEA 583
           + W R +L WQ E+
Sbjct: 357 IAWLRQLLEWQEES 370

Length = 701
>gnl|CDD|213552 TIGR00691, spoT_relA, (p)ppGpp synthetase, RelA/SpoT family Back     alignment and domain information
>gnl|CDD|236843 PRK11092, PRK11092, bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional Back     alignment and domain information
>gnl|CDD|182797 PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional Back     alignment and domain information
>gnl|CDD|214934 smart00954, RelA_SpoT, Region found in RelA / SpoT proteins Back     alignment and domain information
>gnl|CDD|218170 pfam04607, RelA_SpoT, Region found in RelA / SpoT proteins Back     alignment and domain information
>gnl|CDD|222047 pfam13328, HD_4, HD domain Back     alignment and domain information
>gnl|CDD|143389 cd05399, NT_Rel-Spo_like, Nucleotidyltransferase (NT) domain of RelA- and SpoT-like ppGpp synthetases and hydrolases Back     alignment and domain information
>gnl|CDD|225232 COG2357, COG2357, PpGpp synthetase catalytic domain [General function prediction only] Back     alignment and domain information
>gnl|CDD|216815 pfam01966, HD, HD domain Back     alignment and domain information
>gnl|CDD|214679 smart00471, HDc, Metal dependent phosphohydrolases with conserved 'HD' motif Back     alignment and domain information
>gnl|CDD|238032 cd00077, HDc, Metal dependent phosphohydrolases with conserved 'HD' motif Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 735
COG0317 701 SpoT Guanosine polyphosphate pyrophosphohydrolases 100.0
PRK10872 743 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; 100.0
PRK11092 702 bifunctional (p)ppGpp synthetase II/ guanosine-3', 100.0
KOG1157543 consensus Predicted guanosine polyphosphate pyroph 100.0
TIGR00691 683 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. ( 100.0
PF13328153 HD_4: HD domain; PDB: 3NR1_B. 100.0
cd05399129 NT_Rel-Spo_like Nucleotidyltransferase (NT) domain 99.96
PF04607115 RelA_SpoT: Region found in RelA / SpoT proteins; I 99.96
COG2357231 PpGpp synthetase catalytic domain [General functio 99.94
PF0282460 TGS: TGS domain; InterPro: IPR004095 The TGS domai 99.35
cd0166976 TGS_Ygr210_C TGS_Ygr210_C: The C-terminal TGS doma 98.85
cd0166675 TGS_DRG_C TGS_DRG_C: DRG (developmentally regulate 98.74
cd0166860 TGS_RelA_SpoT TGS_RelA_SpoT: The RelA (SpoT) prote 98.31
TIGR03276179 Phn-HD phosphonate degradation operons associated 98.1
cd0493876 TGS_Obg-like TGS_Obg-like: The C-terminal TGS doma 97.92
PRK09602396 translation-associated GTPase; Reviewed 97.86
cd0161660 TGS The TGS domain, named after the ThrRS, GTPase, 97.69
PRK0565966 sulfur carrier protein ThiS; Validated 97.35
PRK00413 638 thrS threonyl-tRNA synthetase; Reviewed 97.29
cd0056565 ThiS ThiaminS ubiquitin-like sulfur carrier protei 97.28
cd0166761 TGS_ThrRS_N TGS _ThrRS_N: ThrRS (threonyl-tRNA Syn 97.26
PRK0643767 hypothetical protein; Provisional 97.26
PRK0177795 hypothetical protein; Validated 97.16
TIGR0168364 thiS thiamine biosynthesis protein ThiS. This mode 97.04
PRK0744070 hypothetical protein; Provisional 97.01
PRK0694465 sulfur carrier protein ThiS; Provisional 96.97
COG210468 ThiS Sulfur transfer protein involved in thiamine 96.84
PRK0805366 sulfur carrier protein ThiS; Provisional 96.84
PRK0769667 sulfur carrier protein ThiS; Provisional 96.82
PRK0836470 sulfur carrier protein ThiS; Provisional 96.7
PRK0586365 sulfur carrier protein ThiS; Provisional 96.34
PRK0648865 sulfur carrier protein ThiS; Validated 96.18
PRK14707 2710 hypothetical protein; Provisional 96.12
PRK0608384 sulfur carrier protein ThiS; Provisional 95.91
PTZ00258390 GTP-binding protein; Provisional 95.76
PLN02908 686 threonyl-tRNA synthetase 95.73
PRK12444 639 threonyl-tRNA synthetase; Reviewed 95.69
PF1445181 Ub-Mut7C: Mut7-C ubiquitin 95.35
PRK09601364 GTP-binding protein YchF; Reviewed 95.11
cd0075480 MoaD Ubiquitin domain of MoaD-like proteins. MoaD 95.08
COG1163365 DRG Predicted GTPase [General function prediction 95.0
PLN0279982 Molybdopterin synthase sulfur carrier subunit 94.89
PF0365884 Ub-RnfH: RnfH family Ubiquitin; InterPro: IPR00534 94.66
PRK11840 326 bifunctional sulfur carrier protein/thiazole synth 94.32
PF0259777 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiam 94.24
smart00471124 HDc Metal dependent phosphohydrolases with conserv 93.83
PF01966122 HD: HD domain; InterPro: IPR006674 This domain is 93.0
TIGR0168280 moaD molybdopterin converting factor, subunit 1, n 92.3
COG291499 Uncharacterized protein conserved in bacteria [Fun 91.51
PRK09169 2316 hypothetical protein; Validated 91.44
TIGR03401228 cyanamide_fam HD domain protein, cyanamide hydrata 90.87
PRK12703339 tRNA 2'-O-methylase; Reviewed 89.09
PRK147072710 hypothetical protein; Provisional 88.87
TIGR0168788 moaD_arch MoaD family protein, archaeal. Members o 86.46
PRK1113081 moaD molybdopterin synthase small subunit; Provisi 85.71
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription] Back     alignment and domain information 
Probab=100.00  E-value=9.7e-134  Score=1145.06  Aligned_cols=458  Identities=41%  Similarity=0.639  Sum_probs=428.8

Q ss_pred             HHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHhcCCccccCchhhHHHHHHHHHHHHhCCCHHHHHHHHhhccccccCCC
Q 004703          212 TYAKEFLANAQLKHKIFREDFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLS  291 (735)
Q Consensus       212 ~~~~~ll~~~~~~~~~~d~~ll~kA~~~A~~aH~GQ~RksGePYI~Hpl~VA~ILa~lg~D~~tIaAALLHDvVEDT~vT  291 (735)
                      ..++++++.+..+.+..+.. +.+|+.||.++|.||+|++|+|||.||++||.||+++++|.++++||||||++|||.+|
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~-l~kA~~~A~q~H~~q~r~SGePYi~Hpl~Va~iLael~~d~~tl~AaLLHD~vEDt~~t   85 (701)
T COG0317           7 VELEELLDSLATYLPPVDIE-LKKAWYYARQAHGGQTRKSGEPYISHPLEVAEILAELHMDMETLAAALLHDTIEDTPVT   85 (701)
T ss_pred             ccHHHHHHHHHhcCChHHHH-HHHHHHHHHHHhHhhcCcCCCchhhCHHHHHHHHHHccCCHHHHHHHHccchHhcCCCC
Confidence            34667888888888766666 99999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCHHHHHHHHHhhcccccchhhhhccccchHHHHHHHHHHHhhcc-CceeehhhhhhhhhhcccccCCCHHHH
Q 004703          292 YDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAVLIKLADRLHNMMTLDALPLCKR  370 (735)
Q Consensus       292 ~eeI~~~FG~eVA~LV~gVTKl~~l~~~~r~~~~~~k~~qaE~lRkmLLAma-D~RVvLIKLADRLhNMRtL~~lp~ekq  370 (735)
                      .++|++.||++|++||+||||++.++++.     ..+..|+|++||||+||. |+||++||||||||||||+..++++||
T Consensus        86 ~e~i~~~FG~eVa~LV~GvTkl~~i~~~~-----~~~~~qaen~rkmllAm~~DiRvilIKLADRLhNmrtl~~~~~ek~  160 (701)
T COG0317          86 EELIEEIFGKEVAKLVEGVTKLKKIGQLS-----SEEELQAENLRKMLLAMVKDIRVVLIKLADRLHNLRTLKNLDEEKR  160 (701)
T ss_pred             HHHHHHHHCHHHHHHHhhHHHhhhhhccC-----ccchhHHHHHHHHHHHhccCccEEEeehhhhhhhcccCccCCHHHH
Confidence            99999999999999999999999984221     123458999999999997 999999999999999999999889999


Q ss_pred             HHHHHHHHHHHHhhhhhcCcchHHHHHHhhhhhccCcchhhHHHHHHHhh--hhhhhHHHHHHHHHHHHHhcCCceeccc
Q 004703          371 QRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVEC--FDEAMVTSAIEKLEQALKDKNISFLVLC  448 (735)
Q Consensus       371 ~riA~ETl~IYAPLA~RLGi~~iK~ELEDLaFryL~P~~Y~~i~~~L~~~--~re~~i~~v~~~L~~~L~~~gI~~~~V~  448 (735)
                      +++|+||++|||||||||||+++|||||||||+||+|++|+.|.+.|.++  .|+++|++++..|++.|.++||+++ |+
T Consensus       161 ~riakETl~IyAPLA~RLGi~~iK~ELEDlsFr~l~P~~Y~~I~~~l~e~r~~re~~i~~~~~~l~~~L~~~gi~a~-v~  239 (701)
T COG0317         161 RRIARETLDIYAPLAHRLGIGQIKWELEDLSFRYLHPDQYKRIAKLLDEKRLEREQYIENVVSELREELKAAGIKAE-VS  239 (701)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeEE-EE
Confidence            99999999999999999999999999999999999999999999999876  4899999999999999999999996 99


Q ss_pred             ccccChHHHHHHHhhcCCCCCccccceEEEEEeCChHHHHHHHHHHHhhccCCCCcccccccCCCCCCccceeEEEEcCC
Q 004703          449 GRHKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEG  528 (735)
Q Consensus       449 gR~Ks~ySI~~Km~rk~~~~~eI~Dl~giRIIv~~~~DCY~vlgiIh~~~~pip~r~kDYIa~PK~NGYqSLHt~V~~~~  528 (735)
                      ||+||+||||+||++|++.|++|+|++||||||++..|||++||+||.+|+|+|+|||||||+||+||||||||+|.||.
T Consensus       240 gR~KhiYSIyrKM~~k~~~f~~I~Dl~avRiIv~~~~dCY~~LGiVH~~~kp~PgrFKDYIA~PK~NgYQSlHTtv~gp~  319 (701)
T COG0317         240 GRPKHIYSIYRKMQKKKLSFDEIYDVRAVRIIVDTIPDCYTALGIVHTLWKPIPGEFDDYIANPKPNGYQSLHTTVIGPE  319 (701)
T ss_pred             cCCCcccHHHHHHHHcccChhhhhhheeEEEEECChHHHHHHHHHHHhcCcCCCCccccccccCCCCCCceeEEEEECCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeEEEEEeehhhHHHHHHHhhhhcccccCCCCcchhHHHHHHHHHHHHHHHHHhccCCCCCCccCCCCCCCCCCCCCCC
Q 004703          529 LVPLEVQIRTKEMHLQAEFGFAAHWRYKEGDCQHSSFVLQMVEWARWVLTWQCEAMSKDRSCVGNGDSIKPPCTFPSHAD  608 (735)
Q Consensus       529 g~~vEVQIRT~~Mh~wAE~GvAahw~YK~~~~~~~~~~~~~~~Wl~~lle~q~e~~~~~~~~~~~~~~~k~~~~f~~~~~  608 (735)
                      |.++||||||.+||..||+|+||||+||+++.    ...+...||++|++||++..|    +.+|+|.+|.| +|    .
T Consensus       320 g~~vEvQIRT~eMh~~AE~GvAAHW~YKe~~~----~~~~~~~Wlr~lle~q~~~~d----~~ef~e~~k~d-lf----~  386 (701)
T COG0317         320 GKPVEVQIRTKEMHEIAELGVAAHWRYKEGGS----AYEEKIAWLRQLLEWQEESAD----SGEFLEQLKSD-LF----P  386 (701)
T ss_pred             CceEEEEEecHHHHHHHhhhHHHHhHhhcCCc----hhhHHHHHHHHHHHHHHhcCC----cHHHHHHHhhc-cc----C
Confidence            99999999999999999999999999999872    346788999999999999877    47899999997 45    4


Q ss_pred             CCCcccCCCCCCCCCEEEEEEcCCcceEEecCCCCCHhHhHHhhcCCCCCCCCCCCCCccccccccCCeecCCCCCcCCC
Q 004703          609 DCPFSYKPQCSHDGPVFVIMIENDKMSVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKM  688 (735)
Q Consensus       609 ~~iyvfTPk~~~~g~vfVi~~~g~~~~v~~LP~GSTvlDfAy~i~~~~~~~~~~g~~~~~~vgakVNgr~V~~l~~~Lk~  688 (735)
                      |+||||||||                ++++||.||||+||||+||+++|         ++|+||||||++|| |+++|++
T Consensus       387 d~VyvfTPkG----------------~vi~LP~GatplDFAY~vHt~iG---------~~c~gAkVnG~ivp-l~~~Lk~  440 (701)
T COG0317         387 DRVYVFTPKG----------------KVIDLPKGATPLDFAYAVHTDIG---------HRCIGAKVNGRIVP-LTTKLQT  440 (701)
T ss_pred             ceEEEECCCC----------------CEEeCCCCCcchhhhhhhhchhc---------ceeeEEEECCEEec-cceecCC
Confidence            8999999994                79999999999999999999975         69999999999996 9999999


Q ss_pred             CCEEEEee---CCCCccHH------HHHHHHHHHHH
Q 004703          689 GDVVELTP---AIPDKSLT------EYREEIQRMYE  715 (735)
Q Consensus       689 GDvVEIit---a~p~~~l~------~~r~~i~rm~~  715 (735)
                      ||+|||+|   ..|+..|+      .+|..|+++|.
T Consensus       441 Gd~VEIit~k~~~Ps~~Wl~~v~t~kAR~kIr~~~k  476 (701)
T COG0317         441 GDQVEIITSKHAGPSRDWLNFVVTSRARAKIRAWFK  476 (701)
T ss_pred             CCEEEEEeCCCCCCCHHHHHHHhhHHHHHHHHHHHH
Confidence            99999999   44788897      68999999993

>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional Back     alignment and domain information
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional Back     alignment and domain information
>KOG1157 consensus Predicted guanosine polyphosphate pyrophosphohydrolase/synthase [Signal transduction mechanisms] Back     alignment and domain information
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family Back     alignment and domain information
>PF13328 HD_4: HD domain; PDB: 3NR1_B Back     alignment and domain information
>cd05399 NT_Rel-Spo_like Nucleotidyltransferase (NT) domain of RelA- and SpoT-like ppGpp synthetases and hydrolases Back     alignment and domain information
>PF04607 RelA_SpoT: Region found in RelA / SpoT proteins; InterPro: IPR007685 The functions of Escherichia coli RelA and SpoT differ somewhat Back     alignment and domain information
>COG2357 PpGpp synthetase catalytic domain [General function prediction only] Back     alignment and domain information
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) [] Back     alignment and domain information
>cd01669 TGS_Ygr210_C TGS_Ygr210_C: The C-terminal TGS domain of Ygr210 GTP-binding protein which is a member of Obg-like family of GTPases, and present in archaea Back     alignment and domain information
>cd01666 TGS_DRG_C TGS_DRG_C: DRG (developmentally regulated GTP-binding protein) represents a family of GTP-binding proteins that includes two members, DRG1 and DRG2 Back     alignment and domain information
>cd01668 TGS_RelA_SpoT TGS_RelA_SpoT: The RelA (SpoT) protein, also referred to as ppGpp hydrolase/synthetase, is a ribosome-associated protein that is activated during amino acid starvation and thought to mediate the stringent response Back     alignment and domain information
>TIGR03276 Phn-HD phosphonate degradation operons associated HDIG domain protein Back     alignment and domain information
>cd04938 TGS_Obg-like TGS_Obg-like: The C-terminal TGS domain of Obg-like GTPases such as those present in DRG (developmentally regulated GTP-binding protein), and GTP-binding proteins Ygr210 and YchF Back     alignment and domain information
>PRK09602 translation-associated GTPase; Reviewed Back     alignment and domain information
>cd01616 TGS The TGS domain, named after the ThrRS, GTPase, and SpoT/RelA proteins where it occurs, is structurally similar to ubiquitin Back     alignment and domain information
>PRK05659 sulfur carrier protein ThiS; Validated Back     alignment and domain information
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein Back     alignment and domain information
>cd01667 TGS_ThrRS_N TGS _ThrRS_N: ThrRS (threonyl-tRNA Synthetase) is a class II tRNA synthetase that couples threonine to its cognate tRNA Back     alignment and domain information
>PRK06437 hypothetical protein; Provisional Back     alignment and domain information
>PRK01777 hypothetical protein; Validated Back     alignment and domain information
>TIGR01683 thiS thiamine biosynthesis protein ThiS Back     alignment and domain information
>PRK07440 hypothetical protein; Provisional Back     alignment and domain information
>PRK06944 sulfur carrier protein ThiS; Provisional Back     alignment and domain information
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism] Back     alignment and domain information
>PRK08053 sulfur carrier protein ThiS; Provisional Back     alignment and domain information
>PRK07696 sulfur carrier protein ThiS; Provisional Back     alignment and domain information
>PRK08364 sulfur carrier protein ThiS; Provisional Back     alignment and domain information
>PRK05863 sulfur carrier protein ThiS; Provisional Back     alignment and domain information
>PRK06488 sulfur carrier protein ThiS; Validated Back     alignment and domain information
>PRK14707 hypothetical protein; Provisional Back     alignment and domain information
>PRK06083 sulfur carrier protein ThiS; Provisional Back     alignment and domain information
>PTZ00258 GTP-binding protein; Provisional Back     alignment and domain information
>PLN02908 threonyl-tRNA synthetase Back     alignment and domain information
>PRK12444 threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PF14451 Ub-Mut7C: Mut7-C ubiquitin Back     alignment and domain information
>PRK09601 GTP-binding protein YchF; Reviewed Back     alignment and domain information
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins Back     alignment and domain information
>COG1163 DRG Predicted GTPase [General function prediction only] Back     alignment and domain information
>PLN02799 Molybdopterin synthase sulfur carrier subunit Back     alignment and domain information
>PF03658 Ub-RnfH: RnfH family Ubiquitin; InterPro: IPR005346 This is a small family of proteins of unknown function Back     alignment and domain information
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional Back     alignment and domain information
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer Back     alignment and domain information
>smart00471 HDc Metal dependent phosphohydrolases with conserved 'HD' motif Back     alignment and domain information
>PF01966 HD: HD domain; InterPro: IPR006674 This domain is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity [] Back     alignment and domain information
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal Back     alignment and domain information
>COG2914 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PRK09169 hypothetical protein; Validated Back     alignment and domain information
>TIGR03401 cyanamide_fam HD domain protein, cyanamide hydratase family Back     alignment and domain information
>PRK12703 tRNA 2'-O-methylase; Reviewed Back     alignment and domain information
>PRK14707 hypothetical protein; Provisional Back     alignment and domain information
>TIGR01687 moaD_arch MoaD family protein, archaeal Back     alignment and domain information
>PRK11130 moaD molybdopterin synthase small subunit; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query735
1vj7_A393 Crystal Structure Of The Bifunctional Catalytic Fra 2e-68
3nr1_A178 A Metazoan Ortholog Of Spot Hydrolyzes Ppgpp And Pl 2e-08
3nqw_A179 A Metazoan Ortholog Of Spot Hydrolyzes Ppgpp And Pl 1e-07
3l9d_A255 The Crystal Structure Of Smu.1046c From Streptococc 3e-07
2be3_A226 Structure Of A Gtp Pyrophosphokinase Family Protein 3e-06
>pdb|1VJ7|A Chain A, Crystal Structure Of The Bifunctional Catalytic Fragment Of Relseq, The RelaSPOT HOMOLOG FROM STREPTOCOCCUS EQUISIMILIS. Length = 393 Back     alignment and structure 
Iteration: 1

 Score =  257 bits (656), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 141/331 (42%), Positives = 207/331 (62%), Gaps = 13/331 (3%)
Query: 232 FVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLS 291
           FV KA   A  AH  Q+R SG+PY++H ++ A +LA +  ++  VA G LHD ++D  ++
Sbjct: 27  FVKKALDYATAAHFYQVRKSGEPYIVHPIQVAGILADLHLDAVTVACGFLHDVVEDTDIT 86
Query: 292 YDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAVLI 350
            D I   FG  V D+V+GV+KL ++   + E   A           M +AM+ D R +L+
Sbjct: 87  LDNIEFDFGKDVRDIVDGVTKLGKVEYKSHEEQLAENH------RKMLMAMSKDIRVILV 140
Query: 351 KLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQH 410
           KLADRLHNM TL  L   K++R ++ET+EI+ PLA+RLGIS  K +LE+L F++LN  + 
Sbjct: 141 KLADRLHNMRTLKHLRKDKQERISRETMEIYAPLAHRLGISRIKWELEDLAFRYLNETEF 200
Query: 411 TELSSKLVECFDE--AMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKLTM 468
            ++S  + E   E  A+V   + K++    ++ + F  + GR K +YSI+ KM  KK   
Sbjct: 201 YKISHMMNEKRREREALVDDIVTKIKSYTTEQGL-FGDVYGRPKHIYSIYRKMRDKKKRF 259
Query: 469 DEIHDIYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTG-E 527
           D+I D+  +R ++E + D Y  +  +H+LW  +PG+ KDYI  PK NGYQS+HT V G +
Sbjct: 260 DQIFDLIAIRCVMETQSDVYAMVGYIHELWRPMPGRFKDYIAAPKANGYQSIHTTVYGPK 319
Query: 528 GLVPLEVQIRTKEMHLQAEFGFAAHWRYKEG 558
           G  P+E+QIRTKEMH  AE+G AAHW YK+G
Sbjct: 320 G--PIEIQIRTKEMHQVAEYGVAAHWAYKKG 348
>pdb|3NR1|A Chain A, A Metazoan Ortholog Of Spot Hydrolyzes Ppgpp And Plays A Role In Starvation Responses Length = 178 Back     alignment and structure
>pdb|3NQW|A Chain A, A Metazoan Ortholog Of Spot Hydrolyzes Ppgpp And Plays A Role In Starvation Responses Length = 179 Back     alignment and structure
>pdb|3L9D|A Chain A, The Crystal Structure Of Smu.1046c From Streptococcus Mutans Ua159 Length = 255 Back     alignment and structure
>pdb|2BE3|A Chain A, Structure Of A Gtp Pyrophosphokinase Family Protein From Streptococcus Pneumoniae Length = 226 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query735
1vj7_A393 Bifunctional RELA/SPOT; HD domain, alpha beta 2-la 1e-152
3nr1_A178 HD domain-containing protein 3; stringent response 6e-57
3nqw_A179 CG11900; stringent response, pyrophosphohydrolase, 1e-53
3l9d_A255 SMU.1046C, putative GTP pyrophosphokinase; transfe 9e-51
2be3_A226 GTP pyrophosphokinase; structural genomics, PSI, p 3e-48
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-16
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-05
>1vj7_A Bifunctional RELA/SPOT; HD domain, alpha beta 2-layer sandwich, helix bundle, mangan PPG2':3'P, (P)PPGPP, PPGPP; HET: GDP GPX; 2.10A {Streptococcus dysgalactiae subsp} SCOP: a.211.1.1 d.218.1.8 Length = 393 Back     alignment and structure
 Score =  446 bits (1149), Expect = e-152
 Identities = 144/360 (40%), Positives = 216/360 (60%), Gaps = 15/360 (4%)

Query: 230 EDFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAF 289
             FV KA   A  AH  Q+R SG+PY++H ++ A +LA +  ++  VA G LHD ++D  
Sbjct: 25  AAFVKKALDYATAAHFYQVRKSGEPYIVHPIQVAGILADLHLDAVTVACGFLHDVVEDTD 84

Query: 290 LSYDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAV 348
           ++ D I   FG  V D+V+GV+KL ++   + E         A+    M +AM+ D R +
Sbjct: 85  ITLDNIEFDFGKDVRDIVDGVTKLGKVEYKSHE------EQLAENHRKMLMAMSKDIRVI 138

Query: 349 LIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPD 408
           L+KLADRLHNM TL  L   K++R ++ET+EI+ PLA+RLGIS  K +LE+L F++LN  
Sbjct: 139 LVKLADRLHNMRTLKHLRKDKQERISRETMEIYAPLAHRLGISRIKWELEDLAFRYLNET 198

Query: 409 QHTELSSKLVECFD--EAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKL 466
           +  ++S  + E     EA+V   + K++    ++ +   V  GR K +YSI+ KM  KK 
Sbjct: 199 EFYKISHMMNEKRREREALVDDIVTKIKSYTTEQGLFGDVY-GRPKHIYSIYRKMRDKKK 257

Query: 467 TMDEIHDIYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTG 526
             D+I D+  +R ++E + D Y  +  +H+LW  +PG+ KDYI  PK NGYQS+HT V G
Sbjct: 258 RFDQIFDLIAIRCVMETQSDVYAMVGYIHELWRPMPGRFKDYIAAPKANGYQSIHTTVYG 317

Query: 527 -EGLVPLEVQIRTKEMHLQAEFGFAAHWRYKEGDCQHSSFVLQM--VEWARWVLTWQCEA 583
            +G  P+E+QIRTKEMH  AE+G AAHW YK+G     +   Q   + W + ++  Q  +
Sbjct: 318 PKG--PIEIQIRTKEMHQVAEYGVAAHWAYKKGVRGKVNQAEQKVGMNWIKELVELQDAS 375
>3nr1_A HD domain-containing protein 3; stringent response, pyrophosphohydrolase, HD (histidine and acid) family, PPGPP hydrolase, hydrolase; 1.90A {Homo sapiens} Length = 178 Back     alignment and structure
>3nqw_A CG11900; stringent response, pyrophosphohydrolase, HD (histidine and acid) family ,PPGPP hydrolase, hydrolase; 2.90A {Drosophila melanogaster} Length = 179 Back     alignment and structure
>3l9d_A SMU.1046C, putative GTP pyrophosphokinase; transferase; 2.48A {Streptococcus mutans} Length = 255 Back     alignment and structure
>2be3_A GTP pyrophosphokinase; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG, transferase; HET: PG4; 2.40A {Streptococcus pneumoniae} SCOP: d.218.1.8 Length = 226 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query735
1vj7_A393 Bifunctional RELA/SPOT; HD domain, alpha beta 2-la 100.0
3l9d_A255 SMU.1046C, putative GTP pyrophosphokinase; transfe 100.0
2be3_A226 GTP pyrophosphokinase; structural genomics, PSI, p 100.0
3nqw_A179 CG11900; stringent response, pyrophosphohydrolase, 100.0
3nr1_A178 HD domain-containing protein 3; stringent response 99.98
3hvz_A78 Uncharacterized protein; alpha-beta protein, struc 99.64
2eki_A93 DRG 1, developmentally-regulated GTP-binding prote 99.15
2kmm_A73 Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohy 98.8
1wwt_A88 Threonyl-tRNA synthetase, cytoplasmic; TGS domain, 98.72
1tke_A 224 Threonyl-tRNA synthetase; ligase; 1.46A {Escherich 98.61
1wxq_A397 GTP-binding protein; structural genomics, riken st 98.43
1f0z_A66 THis protein; ubiquitin fold, transport protein; N 97.13
1tyg_B87 YJBS; alpha beta barrel, protein-protein complex, 97.11
2l32_A74 Small archaeal modifier protein 2; protein BIN; NM 97.1
2kl0_A73 Putative thiamin biosynthesis THis; structural gen 96.98
1qf6_A 642 THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, m 96.96
1ryj_A70 Unknown; beta/alpha protein, structural genomics, 96.89
2k5p_A78 THis protein, thiamine-biosynthesis protein; NESG, 96.88
1rws_A77 Hypothetical protein PF1061; residual dipolar coup 96.83
2cu3_A64 Unknown function protein; thermus thermophilus HB8 96.8
2hj1_A97 Hypothetical protein; structural genomics, PSI, pr 96.74
1nyr_A 645 Threonyl-tRNA synthetase 1; ATP, threonine, ligase 96.54
2q5w_D77 Molybdopterin converting factor, subunit 1; MOCO, 95.96
1vjk_A98 Molybdopterin converting factor, subunit 1; struct 95.16
4a9a_A376 Ribosome-interacting GTPase 1; DRG-DFRP complex, r 94.98
3po0_A89 Small archaeal modifier protein 1; ubiquitin-like 94.88
3rpf_C74 Molybdopterin converting factor, subunit 1 (MOAD); 94.58
1jal_A363 YCHF protein; nucleotide-binding fold, structural 94.12
2ohf_A396 Protein OLA1, GTP-binding protein 9; ATPase, GTPas 93.68
2dby_A368 GTP-binding protein; GDP, structural genomics, NPP 93.61
1fm0_D81 Molybdopterin convertin factor, subunit 1; molybde 93.45
2g1e_A90 Hypothetical protein TA0895; MOAD, molybdopterin, 93.28
3b57_A209 LIN1889 protein; Q92AN1, X-RAY, NESG, structural g 91.43
3dto_A223 BH2835 protein; all alpha-helical protein, structu 90.97
2pjq_A231 Uncharacterized protein LP_2664; LPR71, NESG, stru 90.07
2l52_A99 Methanosarcina acetivorans SAMP1 homolog; beta-grA 89.77
2pq7_A220 Predicted HD superfamily hydrolase; 104161995, HD 89.69
2qgs_A225 Protein Se1688; alpha-helical protein, structural 89.34
3djb_A223 Hydrolase, HD family; all alpha-helical protein., 89.23
2paq_A201 5'-deoxynucleotidase YFBR; HD domain phosphoh stru 88.76
3dwg_C93 9.5 kDa culture filtrate antigen CFP10A; sulfur ca 87.1
1ni3_A392 YCHF GTPase, YCHF GTP-binding protein; structural 86.46
1wgk_A114 Riken cDNA 2900073H19 protein; THis domain, ubiqut 81.97
>1vj7_A Bifunctional RELA/SPOT; HD domain, alpha beta 2-layer sandwich, helix bundle, mangan PPG2':3'P, (P)PPGPP, PPGPP; HET: GDP GPX; 2.10A {Streptococcus dysgalactiae subsp} SCOP: a.211.1.1 d.218.1.8 Back     alignment and structure
Probab=100.00  E-value=1.3e-104  Score=866.68  Aligned_cols=365  Identities=39%  Similarity=0.601  Sum_probs=312.1

Q ss_pred             HHHHHHHHHhhCCcchHHHHHHHHHHHHHHhcCCccccCchhhHHHHHHHHHHHHhCCCHHHHHHHHhhccccccCCCHH
Q 004703          214 AKEFLANAQLKHKIFREDFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYD  293 (735)
Q Consensus       214 ~~~ll~~~~~~~~~~d~~ll~kA~~~A~~aH~GQ~RksGePYI~Hpl~VA~ILa~lg~D~~tIaAALLHDvVEDT~vT~e  293 (735)
                      +++|++.+..+.+..+.+++.+|+.||.++|.||+|++|+|||.||++||.||+++++|.++++||||||++|||.+|.+
T Consensus         9 ~~~l~~~~~~~~~~~~~~~l~~A~~~A~~aH~gQ~rksGePYi~Hpl~VA~iLa~l~~D~~~i~AALLHDvvEDt~~t~e   88 (393)
T 1vj7_A            9 GEEVVALAAKYMNETDAAFVKKALDYATAAHFYQVRKSGEPYIVHPIQVAGILADLHLDAVTVACGFLHDVVEDTDITLD   88 (393)
T ss_dssp             HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCBCTTSCBTTHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHSSCCHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhccCcCCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHhhhHHhcCCCCHH
Confidence            46788888899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCHHHHHHHHHhhcccccchhhhhccccchHHHHHHHHHHHhhcc-CceeehhhhhhhhhhcccccCCCHHHHHH
Q 004703          294 YIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAVLIKLADRLHNMMTLDALPLCKRQR  372 (735)
Q Consensus       294 eI~~~FG~eVA~LV~gVTKl~~l~~~~r~~~~~~k~~qaE~lRkmLLAma-D~RVvLIKLADRLhNMRtL~~lp~ekq~r  372 (735)
                      +|++.||++|+.||+||||+++++...      ....|+|++|||||+|+ |+||++|||||||||||++..+|+++|++
T Consensus        89 ~I~~~FG~~Va~lV~gvTk~~~~~~~~------~~~~qae~~Rkmllam~~D~RvvlIKLADRlhNmRtl~~~~~ek~~~  162 (393)
T 1vj7_A           89 NIEFDFGKDVRDIVDGVTKLGKVEYKS------HEEQLAENHRKMLMAMSKDIRVILVKLADRLHNMRTLKHLRKDKQER  162 (393)
T ss_dssp             HHHHHHCHHHHHHHHHHHHHC--------------------CCSCTTTSCCCHHHHHHHHHHHHHHHHTCC------HHH
T ss_pred             HHHHHhCHHHHHHHHHHHhcccCCccc------HHHHHHHHHHHHHHhhcCCcceeeeeHHHHHHccCchhhCChHHHHH
Confidence            999999999999999999999876421      23457899999999997 99999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhhcCcchHHHHHHhhhhhccCcchhhHHHHHHHhh--hhhhhHHHHHHHHHHHHHhcCCceeccccc
Q 004703          373 FAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVEC--FDEAMVTSAIEKLEQALKDKNISFLVLCGR  450 (735)
Q Consensus       373 iA~ETl~IYAPLA~RLGi~~iK~ELEDLaFryL~P~~Y~~i~~~L~~~--~re~~i~~v~~~L~~~L~~~gI~~~~V~gR  450 (735)
                      +|+||++|||||||||||++||||||||||+||+|+.|++|.++|.+.  .++.+++.+++.|++.|.+.||.+. |+||
T Consensus       163 iA~Etl~iyaPLA~rLGi~~ik~ELEdl~f~~l~p~~y~~i~~~l~~~r~~r~~~i~~i~~~l~~~L~~~gi~~~-v~~R  241 (393)
T 1vj7_A          163 ISRETMEIYAPLAHRLGISRIKWELEDLAFRYLNETEFYKISHMMNEKRREREALVDDIVTKIKSYTTEQGLFGD-VYGR  241 (393)
T ss_dssp             HHHHHHHTHHHHHHHTTCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTCCCE-EEEC
T ss_pred             HHHHHHHHHHHHHhhcChhHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceE-EEEE
Confidence            999999999999999999999999999999999999999999999876  4789999999999999999999985 9999


Q ss_pred             ccChHHHHHHHhhcCCCCCccccceEEEEEeCChHHHHHHHHHHHhhccCCCCcccccccCCCCCCccceeEEEEcCCee
Q 004703          451 HKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLV  530 (735)
Q Consensus       451 ~Ks~ySI~~Km~rk~~~~~eI~Dl~giRIIv~~~~DCY~vlgiIh~~~~pip~r~kDYIa~PK~NGYqSLHt~V~~~~g~  530 (735)
                      +|++||||+||+|++.+|++|+|++|+||||++++|||+++|+||++|+|+|++|||||++||+||||||||+|.+|.| 
T Consensus       242 ~K~~~Si~~Km~rk~~~~~~i~Di~giRIi~~~~~dcy~vl~~i~~~~~~~~~~~kDyIa~PK~nGYqSlH~~v~~p~~-  320 (393)
T 1vj7_A          242 PKHIYSIYRKMRDKKKRFDQIFDLIAIRCVMETQSDVYAMVGYIHELWRPMPGRFKDYIAAPKANGYQSIHTTVYGPKG-  320 (393)
T ss_dssp             CCCHHHHHHHHHHHGGGCCTTGGGCEEEEEESSHHHHHHHHHHHHHHSCBCTTCCEETTTSCCTTCCCCEEEEEECSSS-
T ss_pred             eCChHHHHHHHHHhCCChhhhcccceEEEEECCHHHHHHHHHHHHhcCCCCCCcccccccCCCcCCcceeEEEEEeCCc-
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             eEEEEEeehhhHHHHHHHhhhhcccccCCCC--cchhHHHHHHHHHHHHHHHHHhccC
Q 004703          531 PLEVQIRTKEMHLQAEFGFAAHWRYKEGDCQ--HSSFVLQMVEWARWVLTWQCEAMSK  586 (735)
Q Consensus       531 ~vEVQIRT~~Mh~wAE~GvAahw~YK~~~~~--~~~~~~~~~~Wl~~lle~q~e~~~~  586 (735)
                      ++||||||..||.|||+||++||+||++...  ......++++||++|++||++..++
T Consensus       321 ~vEIQIRT~~mh~~Ae~g~aah~~YK~~~~~~~~~~~~~~~~~wl~~ll~~~~~~~~~  378 (393)
T 1vj7_A          321 PIEIQIRTKEMHQVAEYGVAAHWAYKKGVRGKVNQAEQKVGMNWIKELVELQDASNGD  378 (393)
T ss_dssp             EEEEEEEEHHHHHHHHHTTCC---------------------CHHHHHHHC-------
T ss_pred             eEEEEEecHHHHHHHHhhHHHHhccccCCCcccchhhhHHHHHHHHHHHHHHhcCCCc
Confidence            9999999999999999999999999987432  1123345789999999999887663
>3l9d_A SMU.1046C, putative GTP pyrophosphokinase; transferase; 2.48A {Streptococcus mutans} Back     alignment and structure
>2be3_A GTP pyrophosphokinase; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG, transferase; HET: PG4; 2.40A {Streptococcus pneumoniae} SCOP: d.218.1.8 Back     alignment and structure
>3nqw_A CG11900; stringent response, pyrophosphohydrolase, HD (histidine and acid) family ,PPGPP hydrolase, hydrolase; 2.90A {Drosophila melanogaster} Back     alignment and structure
>3nr1_A HD domain-containing protein 3; stringent response, pyrophosphohydrolase, HD (histidine and acid) family, PPGPP hydrolase, hydrolase; 1.90A {Homo sapiens} Back     alignment and structure
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum} Back     alignment and structure
>2eki_A DRG 1, developmentally-regulated GTP-binding protein 1; protein NEDD3, neural precursor cell expressed developmentally DOWN-regulated protein 3; NMR {Homo sapiens} Back     alignment and structure
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis} Back     alignment and structure
>1wwt_A Threonyl-tRNA synthetase, cytoplasmic; TGS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ligase; NMR {Homo sapiens} Back     alignment and structure
>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A* Back     alignment and structure
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2 Back     alignment and structure
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2 Back     alignment and structure
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2 Back     alignment and structure
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii} Back     alignment and structure
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 Back     alignment and structure
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2 Back     alignment and structure
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A Back     alignment and structure
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A Back     alignment and structure
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E Back     alignment and structure
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4 Back     alignment and structure
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A* Back     alignment and structure
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B* Back     alignment and structure
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1 Back     alignment and structure
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae} Back     alignment and structure
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A Back     alignment and structure
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori} Back     alignment and structure
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 Back     alignment and structure
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} Back     alignment and structure
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A Back     alignment and structure
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D Back     alignment and structure
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A Back     alignment and structure
>3b57_A LIN1889 protein; Q92AN1, X-RAY, NESG, structural genomics, PSI-2, protein structure initiative; 3.00A {Listeria innocua CLIP11262} SCOP: a.211.1.1 Back     alignment and structure
>3dto_A BH2835 protein; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Bacillus halodurans} SCOP: a.211.1.1 Back     alignment and structure
>2pjq_A Uncharacterized protein LP_2664; LPR71, NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Lactobacillus plantarum WCFS1} SCOP: a.211.1.1 Back     alignment and structure
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans} Back     alignment and structure
>2pq7_A Predicted HD superfamily hydrolase; 104161995, HD domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.45A {Uncultured thermotogales bacterium} SCOP: a.211.1.1 Back     alignment and structure
>2qgs_A Protein Se1688; alpha-helical protein, structural genomics, PSI-2, protein S initiative, northeast structural genomics consortium; 2.00A {Staphylococcus epidermidis} SCOP: a.211.1.1 Back     alignment and structure
>3djb_A Hydrolase, HD family; all alpha-helical protein., structural genomics, PSI-2, protein structure initiative; 2.90A {Bacillus thuringiensis serovarkonkukian} SCOP: a.211.1.1 Back     alignment and structure
>2paq_A 5'-deoxynucleotidase YFBR; HD domain phosphoh structural genomics, PSI, protein structure initiative, MID center for structural genomics, MCSG; 2.10A {Escherichia coli} SCOP: a.211.1.1 PDB: 2par_A* 2pau_A* Back     alignment and structure
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A Back     alignment and structure
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 Back     alignment and structure
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 735
d1vj7a1192 a.211.1.1 (A:5-196) Stringent response-like protei 1e-43
d2be3a1203 d.218.1.8 (A:1-203) Putative GTP pyrophosphokinase 4e-37
d1vj7a2175 d.218.1.8 (A:197-371) Stringent response-like prot 4e-30
>d1vj7a1 a.211.1.1 (A:5-196) Stringent response-like protein RelA N-terminal domain {Streptococcus equisimilis [TaxId: 119602]} Length = 192 Back     information, alignment and structure

class: All alpha proteins
fold: HD-domain/PDEase-like
superfamily: HD-domain/PDEase-like
family: HD domain
domain: Stringent response-like protein RelA N-terminal domain
species: Streptococcus equisimilis [TaxId: 119602]

 Score =  153 bits (387), Expect = 1e-43
 Identities = 78/194 (40%), Positives = 116/194 (59%), Gaps = 7/194 (3%)

Query: 214 AKEFLANAQLKHKIFREDFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANS 273
            +E +A A          FV KA   A  AH  Q+R SG+PY++H ++ A +LA +  ++
Sbjct: 5   GEEVVALAAKYMNETDAAFVKKALDYATAAHFYQVRKSGEPYIVHPIQVAGILADLHLDA 64

Query: 274 TVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEAD 333
             VA G LHD ++D  ++ D I   FG  V D+V+GV+KL       +    + +   A+
Sbjct: 65  VTVACGFLHDVVEDTDITLDNIEFDFGKDVRDIVDGVTKL------GKVEYKSHEEQLAE 118

Query: 334 RLHTMFLAMA-DARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGIST 392
               M +AM+ D R +L+KLADRLHNM TL  L   K++R ++ET+EI+ PLA+RLGIS 
Sbjct: 119 NHRKMLMAMSKDIRVILVKLADRLHNMRTLKHLRKDKQERISRETMEIYAPLAHRLGISR 178

Query: 393 WKVQLENLCFKHLN 406
            K +LE+L F++LN
Sbjct: 179 IKWELEDLAFRYLN 192
>d2be3a1 d.218.1.8 (A:1-203) Putative GTP pyrophosphokinase SP1097 {Streptococcus pneumoniae [TaxId: 1313]} Length = 203 Back     information, alignment and structure
>d1vj7a2 d.218.1.8 (A:197-371) Stringent response-like protein RelA domain 2 {Streptococcus equisimilis [TaxId: 119602]} Length = 175 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query735
d1vj7a1192 Stringent response-like protein RelA N-terminal do 100.0
d1vj7a2175 Stringent response-like protein RelA domain 2 {Str 100.0
d2be3a1203 Putative GTP pyrophosphokinase SP1097 {Streptococc 100.0
d1wxqa276 GTP-binding protein PH0525 {Pyrococcus horikoshii 99.28
d1tkea162 Threonyl-tRNA synthetase (ThrRS), N-terminal 'addi 99.12
d1nyra259 Threonyl-tRNA synthetase (ThrRS), N-terminal 'addi 98.93
d1zud2165 Thiamin biosynthesis sulfur carrier protein ThiS { 97.02
d1rwsa_68 Hypothetical protein PF1061 {Archaeon Pyrococcus f 96.52
d2cu3a163 Uncharacterised protein TTHA0675 {Thermus thermoph 96.2
d1tygb_65 Thiamin biosynthesis sulfur carrier protein ThiS { 96.18
d2hj1a177 Hypothetical protein HI0395 {Haemophilus influenza 95.07
d1vjka_88 Molybdopterin synthase subunit MoaD {Pyrococcus fu 94.93
d3dtoa1212 Uncharacterized protein BH2835 {Bacillus haloduran 89.96
d2qgsa1216 Uncharacterized protein SE1688 {Staphylococcus epi 88.86
d3b57a1201 Uncharacterized protein Lin1889 {Listeria innocua 88.37
d2pq7a1217 Predicted hydrolase mes0020 {Uncultured thermotoga 83.72
d2pjqa1215 Uncharacterized protein LP2664 {Lactobacillus plan 82.62
>d1vj7a1 a.211.1.1 (A:5-196) Stringent response-like protein RelA N-terminal domain {Streptococcus equisimilis [TaxId: 119602]} Back     information, alignment and structure
class: All alpha proteins
fold: HD-domain/PDEase-like
superfamily: HD-domain/PDEase-like
family: HD domain
domain: Stringent response-like protein RelA N-terminal domain
species: Streptococcus equisimilis [TaxId: 119602]

Probab=100.00  E-value=5.7e-53  Score=418.10  Aligned_cols=187  Identities=42%  Similarity=0.606  Sum_probs=163.5

Q ss_pred             HHHHHHHHHhhCCcchHHHHHHHHHHHHHHhcCCccccCchhhHHHHHHHHHHHHhCCCHHHHHHHHhhccccccCCCHH
Q 004703          214 AKEFLANAQLKHKIFREDFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYD  293 (735)
Q Consensus       214 ~~~ll~~~~~~~~~~d~~ll~kA~~~A~~aH~GQ~RksGePYI~Hpl~VA~ILa~lg~D~~tIaAALLHDvVEDT~vT~e  293 (735)
                      .++++..++.+.+..|.++|++|+.||.++|.||+|++|+||++||++||.+|+++++|+++++||||||++|||.+|.+
T Consensus         5 ~e~~l~~~~~yl~~~d~~~i~~A~~~A~~~H~gq~r~sG~py~~H~~~VA~iL~~~~~d~~~i~AalLhd~~edt~~t~e   84 (192)
T d1vj7a1           5 GEEVVALAAKYMNETDAAFVKKALDYATAAHFYQVRKSGEPYIVHPIQVAGILADLHLDAVTVACGFLHDVVEDTDITLD   84 (192)
T ss_dssp             HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCBCTTSCBTTHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHSSCCHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCcccChHHHHHHHHHHHHHHHHhcCChHHhhhhheechhhhchhHHH
Confidence            56888899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCHHHHHHHHHhhcccccchhhhhccccchHHHHHHHHHHHhhcc-CceeehhhhhhhhhhcccccCCCHHHHHH
Q 004703          294 YIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAVLIKLADRLHNMMTLDALPLCKRQR  372 (735)
Q Consensus       294 eI~~~FG~eVA~LV~gVTKl~~l~~~~r~~~~~~k~~qaE~lRkmLLAma-D~RVvLIKLADRLhNMRtL~~lp~ekq~r  372 (735)
                      +|+++||++|+++|++|||+..++...      ....+++++||||++|. |+||++|||||||||||++..++++++++
T Consensus        85 ~I~~~FG~~Va~lV~~ltk~~~~~~~~------~~~~~ae~~rkmlla~~~d~rvvlIKLADRLhnlrtl~~~~~~k~~~  158 (192)
T d1vj7a1          85 NIEFDFGKDVRDIVDGVTKLGKVEYKS------HEEQLAENHRKMLMAMSKDIRVILVKLADRLHNMRTLKHLRKDKQER  158 (192)
T ss_dssp             HHHHHHCHHHHHHHHHHHHHC--------------------CCSCTTTSCCCHHHHHHHHHHHHHHHHTCC------HHH
T ss_pred             HHHHhcchhHHHHHHHHHhhccccccc------cchHHHHHHHHHHHhhccCceeehhHHHHHHhhccccccCChHHHHH
Confidence            999999999999999999998876432      23456789999999997 99999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhhcCcchHHHHHHhhhhhccC
Q 004703          373 FAKETLEIFVPLANRLGISTWKVQLENLCFKHLN  406 (735)
Q Consensus       373 iA~ETl~IYAPLA~RLGi~~iK~ELEDLaFryL~  406 (735)
                      +|+||+++|+|||+|||++++|||||||||+|||
T Consensus       159 ~a~Et~~iyaplA~rLG~~~ik~eLEdl~f~~L~  192 (192)
T d1vj7a1         159 ISRETMEIYAPLAHRLGISRIKWELEDLAFRYLN  192 (192)
T ss_dssp             HHHHHHHTHHHHHHHTTCHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999986
>d1vj7a2 d.218.1.8 (A:197-371) Stringent response-like protein RelA domain 2 {Streptococcus equisimilis [TaxId: 119602]} Back     information, alignment and structure
>d2be3a1 d.218.1.8 (A:1-203) Putative GTP pyrophosphokinase SP1097 {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d1wxqa2 d.15.10.2 (A:320-395) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1tkea1 d.15.10.1 (A:1-62) Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1nyra2 d.15.10.1 (A:4-62) Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1zud21 d.15.3.2 (2:2-66) Thiamin biosynthesis sulfur carrier protein ThiS {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1rwsa_ d.15.3.2 (A:) Hypothetical protein PF1061 {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d2cu3a1 d.15.3.2 (A:1-63) Uncharacterised protein TTHA0675 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1tygb_ d.15.3.2 (B:) Thiamin biosynthesis sulfur carrier protein ThiS {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2hj1a1 d.15.3.4 (A:11-87) Hypothetical protein HI0395 {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1vjka_ d.15.3.1 (A:) Molybdopterin synthase subunit MoaD {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d3dtoa1 a.211.1.1 (A:2-213) Uncharacterized protein BH2835 {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure
>d2qgsa1 a.211.1.1 (A:1-216) Uncharacterized protein SE1688 {Staphylococcus epidermidis [TaxId: 1282]} Back     information, alignment and structure
>d3b57a1 a.211.1.1 (A:1-201) Uncharacterized protein Lin1889 {Listeria innocua [TaxId: 1642]} Back     information, alignment and structure
>d2pq7a1 a.211.1.1 (A:1-217) Predicted hydrolase mes0020 {Uncultured thermotogales bacterium [TaxId: 221214]} Back     information, alignment and structure
>d2pjqa1 a.211.1.1 (A:1-215) Uncharacterized protein LP2664 {Lactobacillus plantarum [TaxId: 1590]} Back     information, alignment and structure