Citrus Sinensis ID: 004712
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 734 | 2.2.26 [Sep-21-2011] | |||||||
| Q8RWS9 | 717 | Probable cyclic nucleotid | yes | no | 0.971 | 0.994 | 0.809 | 0.0 | |
| O82226 | 747 | Probable cyclic nucleotid | no | no | 0.994 | 0.977 | 0.771 | 0.0 | |
| Q9M0A4 | 733 | Putative cyclic nucleotid | no | no | 0.982 | 0.983 | 0.769 | 0.0 | |
| Q9S9N5 | 738 | Putative cyclic nucleotid | no | no | 0.975 | 0.970 | 0.718 | 0.0 | |
| Q9FXH6 | 753 | Putative cyclic nucleotid | no | no | 0.987 | 0.962 | 0.710 | 0.0 | |
| O65717 | 716 | Cyclic nucleotide-gated i | no | no | 0.963 | 0.987 | 0.564 | 0.0 | |
| Q9LNJ0 | 711 | Probable cyclic nucleotid | no | no | 0.900 | 0.929 | 0.550 | 0.0 | |
| Q9LD40 | 696 | Putative cyclic nucleotid | no | no | 0.900 | 0.949 | 0.523 | 0.0 | |
| Q9SJA4 | 726 | Probable cyclic nucleotid | no | no | 0.877 | 0.887 | 0.557 | 0.0 | |
| Q9SL29 | 678 | Putative cyclic nucleotid | no | no | 0.892 | 0.966 | 0.538 | 0.0 |
| >sp|Q8RWS9|CNGC5_ARATH Probable cyclic nucleotide-gated ion channel 5 OS=Arabidopsis thaliana GN=CNGC5 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 1195 bits (3091), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 587/725 (80%), Positives = 635/725 (87%), Gaps = 12/725 (1%)
Query: 11 MDGQQEKFVRLDDLDSRLSSSSDTGVRRCGFNVEGLSRTGHASNTTS--FKRGIRKGSEG 68
M G++E FVR+DDLDSRL SSS + N G HASN TS FK+GI+KGS+G
Sbjct: 1 MAGKRENFVRVDDLDSRLPSSSVAFQQNYASNFSGQLHPIHASNETSRSFKKGIQKGSKG 60
Query: 69 LKSIGRSLRFGVSRAVFPEDLKVSEKKIFDPQDKLLLFCNKLFVISCILAVSVDPLFFYL 128
LKSIGRSL FGV RAVFPEDLKVSEKKIFDPQDK LL+CNKLFV SCIL+V VDP FFYL
Sbjct: 61 LKSIGRSLGFGVYRAVFPEDLKVSEKKIFDPQDKFLLYCNKLFVASCILSVFVDPFFFYL 120
Query: 129 PVINDSSKCLGIDRKLAITATTLRTIVDVFYLLHMALQFRTAFIAPSSRVFGRGELVIDP 188
PVIN SKCLGIDRKLAITA+TLRT +DVFYL HMALQ RTA+IAPSSRVFGRGELVIDP
Sbjct: 121 PVINAESKCLGIDRKLAITASTLRTFIDVFYLAHMALQLRTAYIAPSSRVFGRGELVIDP 180
Query: 189 AQIAKRYMRRYFIIDFLAVLPLPQIVVWRFLLRSNGSDVLATKQALFFIVLFQYFPRFFR 248
AQIAKRY++R+FIIDFL+VLPLPQIVVWRFL SNGSDVLATKQAL FIVL QY PRF R
Sbjct: 181 AQIAKRYLQRWFIIDFLSVLPLPQIVVWRFLQSSNGSDVLATKQALLFIVLVQYIPRFLR 240
Query: 249 ILPLTSELKRTAGVFAETAWAGAAYYLLLYMLASHVVGALWYLLALERNDTCWRKACSVT 308
+LPLTSELKRTAGVFAETAWAGAAYYLLLYMLASH+VGA WYLLALERND CW++AC
Sbjct: 241 VLPLTSELKRTAGVFAETAWAGAAYYLLLYMLASHIVGAFWYLLALERNDACWQEACIDA 300
Query: 309 ANCTKDFLYCGNQDMTGYAAWHDISNTTLESKCSADEDD--PPFDFGIYSQALSSGIVSS 366
NC+ DFLYCGNQ+M GYA W+ + L+SKC AD DD PPFDFGIY+QALSSGIVSS
Sbjct: 301 GNCSTDFLYCGNQNMDGYAVWNRAKESVLKSKCRADLDDNNPPFDFGIYTQALSSGIVSS 360
Query: 367 KKFFSKYCYCLWWGLQNLSTLGQGLQTSTFPGEVIFSIALAIFGLILFALLIGNMQTYLQ 426
+ F KYCYCLWWGLQNLSTLGQGL+TST+P E+IFSI+LAI GLILFALLIGNMQTYLQ
Sbjct: 361 QNFIVKYCYCLWWGLQNLSTLGQGLETSTYPMEIIFSISLAISGLILFALLIGNMQTYLQ 420
Query: 427 SLTIRLEEMRIKRRDSEQWMHHRLLPPDLRERVRRYDQYKWLETRGVDEENLVQSLPKDL 486
SLTIRLEEMR+KRRDSEQWMHHR+LP DLRERVRRYDQYKWLETRGVDEE LVQ+LPKDL
Sbjct: 421 SLTIRLEEMRVKRRDSEQWMHHRMLPQDLRERVRRYDQYKWLETRGVDEEYLVQNLPKDL 480
Query: 487 RRDIKRHLCLALVRRVPLFENMDERLLDAICERLKPCLFTDSTYIVREGDPVDEMLFIIR 546
RRDIKRHLCLALVRRVPLF++MD++LLDAIC RLKPCLFT+STY+VREGDPVDEMLFIIR
Sbjct: 481 RRDIKRHLCLALVRRVPLFKSMDDKLLDAICMRLKPCLFTESTYLVREGDPVDEMLFIIR 540
Query: 547 GRLESVTTDGGRSGFFNRGFLKEGDFCGEELLTWALDPKSGVNLPSSTRTVRALKEVEAF 606
GRLESVTTDGGRSGFFNR LKEG+FCGEELLTWALDPKSGVNLPSSTRTV+AL EVEAF
Sbjct: 541 GRLESVTTDGGRSGFFNRSLLKEGEFCGEELLTWALDPKSGVNLPSSTRTVKALTEVEAF 600
Query: 607 ALMAEELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAAWRRYSKRKKMEQTRKE 666
AL +EELKFVASQFRRLHSRQVQHTFRFYS QWRTWAACFIQAAWRRY KRKKME+
Sbjct: 601 ALTSEELKFVASQFRRLHSRQVQHTFRFYSHQWRTWAACFIQAAWRRYCKRKKMEEA--- 657
Query: 667 EEEEEASEGVQSSSTGGGSYSIGATFLATRFAANALRGVHRNRNAKSARELVKLQKPPEP 726
EA SSST G SYSIGA FLAT+FAANALR +HRNRN K R+LVKLQKPPEP
Sbjct: 658 ----EAEAAAVSSSTAGPSYSIGAAFLATKFAANALRTIHRNRNTK-IRDLVKLQKPPEP 712
Query: 727 DFTAE 731
DFTA+
Sbjct: 713 DFTAD 717
|
Probable cyclic nucleotide-gated ion channel. Arabidopsis thaliana (taxid: 3702) |
| >sp|O82226|CNGC6_ARATH Probable cyclic nucleotide-gated ion channel 6 OS=Arabidopsis thaliana GN=CNGC6 PE=1 SV=2 | Back alignment and function description |
|---|
| >sp|Q9M0A4|CNGC9_ARATH Putative cyclic nucleotide-gated ion channel 9 OS=Arabidopsis thaliana GN=CNGC9 PE=1 SV=1 | Back alignment and function description |
|---|
| >sp|Q9S9N5|CNGC7_ARATH Putative cyclic nucleotide-gated ion channel 7 OS=Arabidopsis thaliana GN=CNGC7 PE=2 SV=1 | Back alignment and function description |
|---|
| >sp|Q9FXH6|CNGC8_ARATH Putative cyclic nucleotide-gated ion channel 8 OS=Arabidopsis thaliana GN=CNGC8 PE=3 SV=2 | Back alignment and function description |
|---|
| >sp|O65717|CNGC1_ARATH Cyclic nucleotide-gated ion channel 1 OS=Arabidopsis thaliana GN=CNGC1 PE=1 SV=1 | Back alignment and function description |
|---|
| >sp|Q9LNJ0|CNG10_ARATH Probable cyclic nucleotide-gated ion channel 10 OS=Arabidopsis thaliana GN=CNGC10 PE=2 SV=2 | Back alignment and function description |
|---|
| >sp|Q9LD40|CNG13_ARATH Putative cyclic nucleotide-gated ion channel 13 OS=Arabidopsis thaliana GN=CNGC13 PE=3 SV=2 | Back alignment and function description |
|---|
| >sp|Q9SJA4|CNG14_ARATH Probable cyclic nucleotide-gated ion channel 14 OS=Arabidopsis thaliana GN=CNGC14 PE=2 SV=2 | Back alignment and function description |
|---|
| >sp|Q9SL29|CNG15_ARATH Putative cyclic nucleotide-gated ion channel 15 OS=Arabidopsis thaliana GN=CNGC15 PE=3 SV=1 | Back alignment and function description |
|---|
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 734 | ||||||
| 224143939 | 733 | predicted protein [Populus trichocarpa] | 0.994 | 0.995 | 0.849 | 0.0 | |
| 255577001 | 735 | Cyclic nucleotide-gated ion channel, put | 0.995 | 0.994 | 0.849 | 0.0 | |
| 225445859 | 743 | PREDICTED: probable cyclic nucleotide-ga | 1.0 | 0.987 | 0.823 | 0.0 | |
| 356543300 | 732 | PREDICTED: probable cyclic nucleotide-ga | 0.994 | 0.997 | 0.842 | 0.0 | |
| 449453970 | 731 | PREDICTED: probable cyclic nucleotide-ga | 0.993 | 0.997 | 0.823 | 0.0 | |
| 356500659 | 728 | PREDICTED: probable cyclic nucleotide-ga | 0.989 | 0.997 | 0.822 | 0.0 | |
| 356562567 | 728 | PREDICTED: probable cyclic nucleotide-ga | 0.989 | 0.997 | 0.822 | 0.0 | |
| 449522199 | 711 | PREDICTED: probable cyclic nucleotide-ga | 0.965 | 0.997 | 0.824 | 0.0 | |
| 30696976 | 717 | cyclic nucleotide gated channel [Arabido | 0.971 | 0.994 | 0.809 | 0.0 | |
| 297793311 | 717 | ATCNGC5 [Arabidopsis lyrata subsp. lyrat | 0.971 | 0.994 | 0.804 | 0.0 |
| >gi|224143939|ref|XP_002325129.1| predicted protein [Populus trichocarpa] gi|222866563|gb|EEF03694.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1278 bits (3308), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 626/737 (84%), Positives = 668/737 (90%), Gaps = 7/737 (0%)
Query: 1 MFDCGYKSYYMDG-QQEKFVRLDDLDSRLSSSSDTGVRRCGFNVEGLSRTGHASNTTS-- 57
MFDCG KS Y+ G Q++KFVRLDDLDSRLSS S GVR CGF +EG RTG ++T S
Sbjct: 1 MFDCGSKSQYLGGGQRDKFVRLDDLDSRLSSPSSAGVRSCGFGIEGFRRTGQGADTPSRS 60
Query: 58 FKRGIRKGSEGLKSIGRSLRFGVSRAVFPEDLKVSEKKIFDPQDKLLLFCNKLFVISCIL 117
FKRGIRKGSEGLKSIGRSLRFGV R VFPEDLKVSEKKIFDPQDK L FCNKLF+ISCIL
Sbjct: 61 FKRGIRKGSEGLKSIGRSLRFGVPRGVFPEDLKVSEKKIFDPQDKFLQFCNKLFLISCIL 120
Query: 118 AVSVDPLFFYLPVINDSSKCLGIDRKLAITATTLRTIVDVFYLLHMALQFRTAFIAPSSR 177
AVSVDPLFFYLPV +DS CLGIDRKLA ATTLRTIVD FYL+ MALQFRTA+IAPSSR
Sbjct: 121 AVSVDPLFFYLPVFSDSETCLGIDRKLATIATTLRTIVDAFYLIRMALQFRTAYIAPSSR 180
Query: 178 VFGRGELVIDPAQIAKRYMRRYFIIDFLAVLPLPQIVVWRFLLRSNGSDVLATKQALFFI 237
VFGRGELVIDP QIAKRYM+RYFIID L+VLPLPQIVVWRFLLRS GSDVLATKQAL +I
Sbjct: 181 VFGRGELVIDPTQIAKRYMQRYFIIDLLSVLPLPQIVVWRFLLRSKGSDVLATKQALLYI 240
Query: 238 VLFQYFPRFFRILPLTSELKRTAGVFAETAWAGAAYYLLLYMLASHVVGALWYLLALERN 297
+L QY PRFFRILPLTSELKRTAGVFAETAWAGAAYYLLLYMLASH+VG+ WYLLA+ERN
Sbjct: 241 ILLQYIPRFFRILPLTSELKRTAGVFAETAWAGAAYYLLLYMLASHIVGSFWYLLAVERN 300
Query: 298 DTCWRKACSVTANCTKDFLYCGNQDMTGYAAWHDISNTTLESKCSADEDDPPFDFGIYSQ 357
D CW+K C+ C KDFLYCGN+ M Y AW ++ L S CSAD D+ FD+GIYS
Sbjct: 301 DACWQKNCTAAVKCKKDFLYCGNRGMEDYRAW---DSSILNSNCSAD-DNNQFDYGIYSN 356
Query: 358 ALSSGIVSSKKFFSKYCYCLWWGLQNLSTLGQGLQTSTFPGEVIFSIALAIFGLILFALL 417
ALSSGIVSSKKF SKYC+CLWWGLQNLSTLGQGL+TST+PGEVIFSIALAIFGLILFALL
Sbjct: 357 ALSSGIVSSKKFVSKYCFCLWWGLQNLSTLGQGLETSTYPGEVIFSIALAIFGLILFALL 416
Query: 418 IGNMQTYLQSLTIRLEEMRIKRRDSEQWMHHRLLPPDLRERVRRYDQYKWLETRGVDEEN 477
IGNMQTYLQSLTIRLEEMR+KRRDSEQWMHHRLLP DLRERVRRYDQYKWLETRGVDEEN
Sbjct: 417 IGNMQTYLQSLTIRLEEMRVKRRDSEQWMHHRLLPQDLRERVRRYDQYKWLETRGVDEEN 476
Query: 478 LVQSLPKDLRRDIKRHLCLALVRRVPLFENMDERLLDAICERLKPCLFTDSTYIVREGDP 537
LVQSLPKDLRRDIKRHLCLALVRRVPLFENMDERLLDAICERLKPCLFT+STYIVREGDP
Sbjct: 477 LVQSLPKDLRRDIKRHLCLALVRRVPLFENMDERLLDAICERLKPCLFTESTYIVREGDP 536
Query: 538 VDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCGEELLTWALDPKSGVNLPSSTRTV 597
VDEMLFIIRGRLESVTTDGGRSGFFNR L+EGDFCGEELLTWALDPKSG NLPSSTRTV
Sbjct: 537 VDEMLFIIRGRLESVTTDGGRSGFFNRSLLREGDFCGEELLTWALDPKSGANLPSSTRTV 596
Query: 598 RALKEVEAFALMAEELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAAWRRYSKR 657
+AL+EVEAFAL+AEELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAAWRRYSKR
Sbjct: 597 KALREVEAFALIAEELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAAWRRYSKR 656
Query: 658 KKMEQTRKEEEEEEASEGVQSSSTGGGSYSIGATFLATRFAANALRGVHRNRNAKSAREL 717
K +E RKEEE+E ++G +S+ GGGSYSIGATFLATRFAANALRG+HRNRNAK+AREL
Sbjct: 657 KSLELRRKEEEDEAEADGNRSNMRGGGSYSIGATFLATRFAANALRGIHRNRNAKTAREL 716
Query: 718 VKLQKPPEPDFTAEDAD 734
VKLQKPPEPDFTA+DAD
Sbjct: 717 VKLQKPPEPDFTADDAD 733
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255577001|ref|XP_002529385.1| Cyclic nucleotide-gated ion channel, putative [Ricinus communis] gi|223531133|gb|EEF32981.1| Cyclic nucleotide-gated ion channel, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
| >gi|225445859|ref|XP_002278464.1| PREDICTED: probable cyclic nucleotide-gated ion channel 5 [Vitis vinifera] gi|297743648|emb|CBI36531.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|356543300|ref|XP_003540100.1| PREDICTED: probable cyclic nucleotide-gated ion channel 5-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|449453970|ref|XP_004144729.1| PREDICTED: probable cyclic nucleotide-gated ion channel 6-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|356500659|ref|XP_003519149.1| PREDICTED: probable cyclic nucleotide-gated ion channel 5-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|356562567|ref|XP_003549541.1| PREDICTED: probable cyclic nucleotide-gated ion channel 5-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|449522199|ref|XP_004168115.1| PREDICTED: probable cyclic nucleotide-gated ion channel 6-like, partial [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|30696976|ref|NP_851209.1| cyclic nucleotide gated channel [Arabidopsis thaliana] gi|42568613|ref|NP_200602.2| cyclic nucleotide gated channel [Arabidopsis thaliana] gi|38503077|sp|Q8RWS9.1|CNGC5_ARATH RecName: Full=Probable cyclic nucleotide-gated ion channel 5; Short=AtCNGC5; AltName: Full=Cyclic nucleotide- and calmodulin-regulated ion channel 5 gi|20268758|gb|AAM14082.1| putative cyclic nucleotide and calmodulin-regulated ion channel [Arabidopsis thaliana] gi|21281123|gb|AAM45101.1| putative cyclic nucleotide and calmodulin-regulated ion channel [Arabidopsis thaliana] gi|222423973|dbj|BAH19948.1| AT5G57940 [Arabidopsis thaliana] gi|332009591|gb|AED96974.1| cyclic nucleotide gated channel [Arabidopsis thaliana] gi|332009593|gb|AED96976.1| cyclic nucleotide gated channel [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
| >gi|297793311|ref|XP_002864540.1| ATCNGC5 [Arabidopsis lyrata subsp. lyrata] gi|297310375|gb|EFH40799.1| ATCNGC5 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 734 | ||||||
| TAIR|locus:2174448 | 717 | CNGC5 "cyclic nucleotide gated | 0.971 | 0.994 | 0.737 | 1.8e-286 | |
| TAIR|locus:2061401 | 747 | CNGC6 "cyclic nucleotide-gated | 0.994 | 0.977 | 0.705 | 6.8e-285 | |
| TAIR|locus:2118836 | 733 | CNGC9 "cyclic nucleotide gated | 0.982 | 0.983 | 0.707 | 2.2e-279 | |
| TAIR|locus:2200502 | 738 | CNGC7 "cyclic nucleotide gated | 0.978 | 0.972 | 0.665 | 5e-257 | |
| TAIR|locus:2013139 | 753 | CNGC8 "cyclic nucleotide gated | 0.989 | 0.964 | 0.656 | 9.4e-256 | |
| TAIR|locus:2163776 | 716 | CNGC1 "cyclic nucleotide gated | 0.961 | 0.986 | 0.530 | 1e-194 | |
| TAIR|locus:2062814 | 678 | CNGC15 "cyclic nucleotide-gate | 0.829 | 0.898 | 0.536 | 2.4e-179 | |
| TAIR|locus:2125206 | 696 | CNGC13 "cyclic nucleotide-gate | 0.900 | 0.949 | 0.492 | 3.1e-177 | |
| TAIR|locus:2046703 | 726 | CNGC14 "cyclic nucleotide-gate | 0.788 | 0.797 | 0.557 | 5.1e-177 | |
| TAIR|locus:2118816 | 720 | CNGC17 "cyclic nucleotide-gate | 0.889 | 0.906 | 0.508 | 1.7e-171 |
| TAIR|locus:2174448 CNGC5 "cyclic nucleotide gated channel 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2752 (973.8 bits), Expect = 1.8e-286, P = 1.8e-286
Identities = 535/725 (73%), Positives = 581/725 (80%)
Query: 11 MDGQQEKFVXXXXXXXXXXXXXXTGVRRCGFNVEGLSRTGHASNTTS--FKRGIRKGSEG 68
M G++E FV + N G HASN TS FK+GI+KGS+G
Sbjct: 1 MAGKRENFVRVDDLDSRLPSSSVAFQQNYASNFSGQLHPIHASNETSRSFKKGIQKGSKG 60
Query: 69 LKSIGRSLRFGVSRAVFPEDLKVSEKKIFDPQDKLLLFCNKLFVISCILAVSVDPLFFYL 128
LKSIGRSL FGV RAVFPEDLKVSEKKIFDPQDK LL+CNKLFV SCIL+V VDP FFYL
Sbjct: 61 LKSIGRSLGFGVYRAVFPEDLKVSEKKIFDPQDKFLLYCNKLFVASCILSVFVDPFFFYL 120
Query: 129 PVINDSSKCLGIDRKLAITATTLRTIVDVFYLLHMALQFRTAFIAPSSRVFGRGELVIDP 188
PVIN SKCLGIDRKLAITA+TLRT +DVFYL HMALQ RTA+IAPSSRVFGRGELVIDP
Sbjct: 121 PVINAESKCLGIDRKLAITASTLRTFIDVFYLAHMALQLRTAYIAPSSRVFGRGELVIDP 180
Query: 189 AQIAKRYMRRYFIIDFLAVLPLPQIVVWRFLLRSNGSDVLATKQALFFIVLFQYFPRFFR 248
AQIAKRY++R+FIIDFL+VLPLPQIVVWRFL SNGSDVLATKQAL FIVL QY PRF R
Sbjct: 181 AQIAKRYLQRWFIIDFLSVLPLPQIVVWRFLQSSNGSDVLATKQALLFIVLVQYIPRFLR 240
Query: 249 ILPLTSELKRTAGVFAETAWXXXXXXXXXXXXXSHVVGALWYLLALERNDTCWRKACSVT 308
+LPLTSELKRTAGVFAETAW SH+VGA WYLLALERND CW++AC
Sbjct: 241 VLPLTSELKRTAGVFAETAWAGAAYYLLLYMLASHIVGAFWYLLALERNDACWQEACIDA 300
Query: 309 ANCTKDFLYCGNQDMTGYAAWHDISNTTLESKCSADEDD--PPFDFGIYSQALSSGIVSS 366
NC+ DFLYCGNQ+M GYA W+ + L+SKC AD DD PPFDFGIY+QALSSGIVSS
Sbjct: 301 GNCSTDFLYCGNQNMDGYAVWNRAKESVLKSKCRADLDDNNPPFDFGIYTQALSSGIVSS 360
Query: 367 KKFFSKYCYCLWWGLQNLSTLGQGLQTSTFPGEVXXXXXXXXXXXXXXXXXXXNMQTYLQ 426
+ F KYCYCLWWGLQNLSTLGQGL+TST+P E+ NMQTYLQ
Sbjct: 361 QNFIVKYCYCLWWGLQNLSTLGQGLETSTYPMEIIFSISLAISGLILFALLIGNMQTYLQ 420
Query: 427 SLTIRLEEMRIKRRDSEQWMHHRLLPPDLRERVRRYDQYKWLETRGVDEENLVQSLPKDL 486
SLTIRLEEMR+KRRDSEQWMHHR+LP DLRERVRRYDQYKWLETRGVDEE LVQ+LPKDL
Sbjct: 421 SLTIRLEEMRVKRRDSEQWMHHRMLPQDLRERVRRYDQYKWLETRGVDEEYLVQNLPKDL 480
Query: 487 RRDIKRHLCLALVRRVPLFENMDERLLDAICERLKPCLFTDSTYIVREGDPVDEMLFIIR 546
RRDIKRHLCLALVRRVPLF++MD++LLDAIC RLKPCLFT+STY+VREGDPVDEMLFIIR
Sbjct: 481 RRDIKRHLCLALVRRVPLFKSMDDKLLDAICMRLKPCLFTESTYLVREGDPVDEMLFIIR 540
Query: 547 GRLESVTTDGGRSGFFNRGFLKEGDFCGEELLTWALDPKSGVNLPSSTRTVRALKEVEAF 606
GRLESVTTDGGRSGFFNR LKEG+FCGEELLTWALDPKSGVNLPSSTRTV+AL EVEAF
Sbjct: 541 GRLESVTTDGGRSGFFNRSLLKEGEFCGEELLTWALDPKSGVNLPSSTRTVKALTEVEAF 600
Query: 607 ALMAEELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAAWRRYSKRKKMEQTRKX 666
AL +EELKFVASQFRRLHSRQVQHTFRFYS QWRTWAACFIQAAWRRY KRKKME+
Sbjct: 601 ALTSEELKFVASQFRRLHSRQVQHTFRFYSHQWRTWAACFIQAAWRRYCKRKKMEEAE-- 658
Query: 667 XXXXXAXXXXXXXXXXXXXXXXXATFLATRFAANALRGVHRNRNAKSARELVKLQKPPEP 726
A A FLAT+FAANALR +HRNRN K R+LVKLQKPPEP
Sbjct: 659 -----AEAAAVSSSTAGPSYSIGAAFLATKFAANALRTIHRNRNTK-IRDLVKLQKPPEP 712
Query: 727 DFTAE 731
DFTA+
Sbjct: 713 DFTAD 717
|
|
| TAIR|locus:2061401 CNGC6 "cyclic nucleotide-gated channel 6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2118836 CNGC9 "cyclic nucleotide gated channel 9" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2200502 CNGC7 "cyclic nucleotide gated channel 7" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2013139 CNGC8 "cyclic nucleotide gated channel 8" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2163776 CNGC1 "cyclic nucleotide gated channel 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2062814 CNGC15 "cyclic nucleotide-gated channel 15" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2125206 CNGC13 "cyclic nucleotide-gated channel 13" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2046703 CNGC14 "cyclic nucleotide-gated channel 14" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2118816 CNGC17 "cyclic nucleotide-gated channel 17" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9S9N5 | CNGC7_ARATH | No assigned EC number | 0.7188 | 0.9754 | 0.9701 | no | no |
| Q8RWS9 | CNGC5_ARATH | No assigned EC number | 0.8096 | 0.9713 | 0.9944 | yes | no |
| O82226 | CNGC6_ARATH | No assigned EC number | 0.7713 | 0.9945 | 0.9772 | no | no |
| Q9FXH6 | CNGC8_ARATH | No assigned EC number | 0.7104 | 0.9877 | 0.9628 | no | no |
| Q9M0A4 | CNGC9_ARATH | No assigned EC number | 0.7695 | 0.9822 | 0.9836 | no | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
 |
 |
 |
 |
 |
 |
 |
 |
 |
 | estExt_fgenesh4_pm.C_LG_XVIII0347 | hypothetical protein (733 aa) | ||||||
(Populus trichocarpa) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 734 | |||
| cd00038 | 115 | cd00038, CAP_ED, effector domain of the CAP family | 7e-18 | |
| PLN03192 | 823 | PLN03192, PLN03192, Voltage-dependent potassium ch | 3e-13 | |
| smart00100 | 120 | smart00100, cNMP, Cyclic nucleotide-monophosphate | 1e-10 | |
| pfam00520 | 194 | pfam00520, Ion_trans, Ion transport protein | 2e-08 | |
| pfam00027 | 91 | pfam00027, cNMP_binding, Cyclic nucleotide-binding | 7e-07 | |
| COG0664 | 214 | COG0664, Crp, cAMP-binding proteins - catabolite g | 6e-06 | |
| PLN03192 | 823 | PLN03192, PLN03192, Voltage-dependent potassium ch | 0.001 |
| >gnl|CDD|237999 cd00038, CAP_ED, effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor | Back alignment and domain information |
|---|
Score = 79.7 bits (197), Expect = 7e-18
Identities = 36/132 (27%), Positives = 52/132 (39%), Gaps = 17/132 (12%)
Query: 504 LFENMDERLLDAICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFN 563
LF +D+ L+ + + L+ F I+R+GDP D + ++ G +E D
Sbjct: 1 LFSGLDDEELEELADALEERRFPAGEVIIRQGDPADSLYIVLSGSVEVYKLDED-GREQI 59
Query: 564 RGFLKEGDFCGEELLTWALDPKSGVNLPSSTRTVRALKEVEAFALMAEELKFVASQFRRL 623
GFL GD GE L + + TVRAL + E L S FRRL
Sbjct: 60 VGFLGPGDLFGELAL---------LGNGPRSATVRALTDSELLVLP-------RSDFRRL 103
Query: 624 HSRQVQHTFRFY 635
+ R
Sbjct: 104 LQEYPELARRLL 115
|
In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of the structural integrity of the beta-barrel; CooA is a homodimeric transcription factor that belongs to CAP family; cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain; cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain; cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section; also found in vertebrate cyclic nucleotide-gated ion-channels. Length = 115 |
| >gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|197516 smart00100, cNMP, Cyclic nucleotide-monophosphate binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|215968 pfam00520, Ion_trans, Ion transport protein | Back alignment and domain information |
|---|
| >gnl|CDD|215664 pfam00027, cNMP_binding, Cyclic nucleotide-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|223736 COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 734 | |||
| KOG0498 | 727 | consensus K+-channel ERG and related proteins, con | 100.0 | |
| PLN03192 | 823 | Voltage-dependent potassium channel; Provisional | 100.0 | |
| KOG0500 | 536 | consensus Cyclic nucleotide-gated cation channel C | 100.0 | |
| KOG0501 | 971 | consensus K+-channel KCNQ [Inorganic ion transport | 100.0 | |
| KOG0499 | 815 | consensus Cyclic nucleotide-gated cation channel C | 100.0 | |
| PRK09392 | 236 | ftrB transcriptional activator FtrB; Provisional | 99.69 | |
| PRK11753 | 211 | DNA-binding transcriptional dual regulator Crp; Pr | 99.64 | |
| PRK11161 | 235 | fumarate/nitrate reduction transcriptional regulat | 99.63 | |
| KOG3713 | 477 | consensus Voltage-gated K+ channel KCNB/KCNC [Inor | 99.54 | |
| TIGR03697 | 193 | NtcA_cyano global nitrogen regulator NtcA, cyanoba | 99.53 | |
| PRK10402 | 226 | DNA-binding transcriptional activator YeiL; Provis | 99.53 | |
| PRK09391 | 230 | fixK transcriptional regulator FixK; Provisional | 99.48 | |
| PRK13918 | 202 | CRP/FNR family transcriptional regulator; Provisio | 99.47 | |
| COG0664 | 214 | Crp cAMP-binding proteins - catabolite gene activa | 99.46 | |
| PF00520 | 200 | Ion_trans: Ion transport protein calcium channel s | 99.43 | |
| KOG1545 | 507 | consensus Voltage-gated shaker-like K+ channel KCN | 99.4 | |
| cd00038 | 115 | CAP_ED effector domain of the CAP family of transc | 99.38 | |
| smart00100 | 120 | cNMP Cyclic nucleotide-monophosphate binding domai | 99.36 | |
| PF00027 | 91 | cNMP_binding: Cyclic nucleotide-binding domain; In | 99.32 | |
| KOG0614 | 732 | consensus cGMP-dependent protein kinase [Signal tr | 99.15 | |
| PLN02868 | 413 | acyl-CoA thioesterase family protein | 99.11 | |
| COG2905 | 610 | Predicted signal-transduction protein containing c | 99.06 | |
| KOG1419 | 654 | consensus Voltage-gated K+ channel KCNQ [Inorganic | 99.05 | |
| KOG0614 | 732 | consensus cGMP-dependent protein kinase [Signal tr | 98.99 | |
| KOG1113 | 368 | consensus cAMP-dependent protein kinase types I an | 98.95 | |
| PF07885 | 79 | Ion_trans_2: Ion channel; InterPro: IPR013099 This | 98.88 | |
| KOG1113 | 368 | consensus cAMP-dependent protein kinase types I an | 98.76 | |
| KOG1420 | 1103 | consensus Ca2+-activated K+ channel Slowpoke, alph | 98.65 | |
| KOG4390 | 632 | consensus Voltage-gated A-type K+ channel KCND [In | 98.54 | |
| KOG2968 | 1158 | consensus Predicted esterase of the alpha-beta hyd | 97.98 | |
| PRK10537 | 393 | voltage-gated potassium channel; Provisional | 97.9 | |
| PF08412 | 77 | Ion_trans_N: Ion transport protein N-terminal; Int | 97.75 | |
| KOG3684 | 489 | consensus Ca2+-activated K+ channel proteins (inte | 97.71 | |
| PF01007 | 336 | IRK: Inward rectifier potassium channel; InterPro: | 97.7 | |
| KOG2968 | 1158 | consensus Predicted esterase of the alpha-beta hyd | 97.55 | |
| KOG1418 | 433 | consensus Tandem pore domain K+ channel [Inorganic | 97.27 | |
| PF04831 | 153 | Popeye: Popeye protein conserved region; InterPro: | 96.99 | |
| PRK11832 | 207 | putative DNA-binding transcriptional regulator; Pr | 96.77 | |
| KOG3542 | 1283 | consensus cAMP-regulated guanine nucleotide exchan | 95.85 | |
| KOG3827 | 400 | consensus Inward rectifier K+ channel [Inorganic i | 95.55 | |
| KOG4404 | 350 | consensus Tandem pore domain K+ channel TASK3/THIK | 95.54 | |
| KOG4404 | 350 | consensus Tandem pore domain K+ channel TASK3/THIK | 95.32 | |
| PLN03223 | 1634 | Polycystin cation channel protein; Provisional | 95.23 | |
| KOG2302 | 1956 | consensus T-type voltage-gated Ca2+ channel, pore- | 94.62 | |
| KOG3193 | 1087 | consensus K+ channel subunit [Inorganic ion transp | 94.06 | |
| KOG1418 | 433 | consensus Tandem pore domain K+ channel [Inorganic | 90.87 | |
| KOG3542 | 1283 | consensus cAMP-regulated guanine nucleotide exchan | 89.67 | |
| KOG2301 | 1592 | consensus Voltage-gated Ca2+ channels, alpha1 subu | 81.15 |
| >KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-116 Score=999.93 Aligned_cols=577 Identities=55% Similarity=0.912 Sum_probs=518.9
Q ss_pred cCCCeeecCCChHHHHHhHHHHHHHHHHHHHhhhhcccccccCCCcccccCccchhhHHHHHHHHHHHHHHHHHHHhhhc
Q 004712 91 VSEKKIFDPQDKLLLFCNKLFVISCILAVSVDPLFFYLPVINDSSKCLGIDRKLAITATTLRTIVDVFYLLHMALQFRTA 170 (734)
Q Consensus 91 ~~~~~ii~P~s~~~~~W~~i~l~~~l~~~~~~Pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~f~~di~l~F~T~ 170 (734)
...++||||+|+++..||++++++|+|+++++|++|+|+..++...| +|..+...++++|+++|+||++||+++|+||
T Consensus 64 ~~~~~Ii~P~s~~~~~W~~~~Ll~~iya~~v~P~~f~f~~~~~~~~~--~d~~~~~~l~v~d~ivD~fflvdIvL~Frta 141 (727)
T KOG0498|consen 64 KSRKWILDPYSPFYRVWNKFFLLLVIYAAFVDPLFFYFLLIDDERKC--IDGKLAAPLTVLDTIVDIFFLVDIVLNFRTA 141 (727)
T ss_pred cccceeECCCChHHHHHHHHHHHHHHHHHHhccceeeEEeccccccc--ccccccCceeeHHHHHHHHHHHHHHHhheEE
Confidence 44467999999999999999999999999999999999999988999 8999999999999999999999999999999
Q ss_pred eecCCCcccCCCeEEeCHHHHHHHHHhhhhHHHhHhhCcHhHHHHHhhhccCCCchhHHhHHHHHHHHHhhhhhhhHhhc
Q 004712 171 FIAPSSRVFGRGELVIDPAQIAKRYMRRYFIIDFLAVLPLPQIVVWRFLLRSNGSDVLATKQALFFIVLFQYFPRFFRIL 250 (734)
Q Consensus 171 y~~~~s~~~~~G~lV~d~~~Ia~rYlk~~F~iDlls~lPl~~i~~~~~~~~~~~~~~~~~~~~Lr~i~l~qyl~Rl~ri~ 250 (734)
|++++|+ ++|.||++||+||+++||++|++|++|+||+++|.++ ...........|..+.++||||||+|++
T Consensus 142 yv~~~s~-----elV~dpk~IA~rYl~twFiiDlis~lP~~~i~~~~~~---~~~~~~~~~~~l~~il~~~rL~Rl~Rv~ 213 (727)
T KOG0498|consen 142 YVDPSSY-----ELVDDPKKIAKRYLKTWFLIDLISTLPFDQIVVLVVI---GSTSLALESTILVGILLLQRLPRLRRVI 213 (727)
T ss_pred EECCCCc-----eeeeCHHHHHHHHHhhhHHHHHHHhcChhhheeeeee---cccchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 9999974 7999999999999999999999999999999999876 1222233334788888899999999999
Q ss_pred chhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHhhhcCCCCCcccccccCCCCcccccccc
Q 004712 251 PLTSELKRTAGVFAETAWAGAAYYLLLYMLASHVVGALWYLLALERNDTCWRKACSVTANCTKDFLYCGNQDMTGYAAWH 330 (734)
Q Consensus 251 ~l~~~l~~~~~~~~~~~~~~~~~~ll~~~l~~H~~gc~wyll~~~~~~~cw~~~c~~~~~c~~~~l~~~~~~~~~~~sW~ 330 (734)
+++.++++.+|++.++||+++++++++|||++||+||+||++++++++.||+++ +|+
T Consensus 214 ~l~~r~~k~~~~v~~~awa~~a~ll~~~~l~sH~~gc~wYlia~~~~~~~~~~~-----------------------tw~ 270 (727)
T KOG0498|consen 214 PLFARLEKDTGFVYETAWAGAALLLSVYLLASHWAGCIWYLIAIERPASCPRKA-----------------------TWL 270 (727)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccc-----------------------ccc
Confidence 999999999999999999999999999999999999999999999999999754 332
Q ss_pred ccchhcccccCCCCCCCCCCCcchhhhhhhcCcccCchhHHHHHHHHHHHhHhcccccCCCCccCChhHHHHHHHHHHHH
Q 004712 331 DISNTTLESKCSADEDDPPFDFGIYSQALSSGIVSSKKFFSKYCYCLWWGLQNLSTLGQGLQTSTFPGEVIFSIALAIFG 410 (734)
Q Consensus 331 ~~~~~~~~~~c~~~~~~~~f~~g~~~~a~~~~~~~~~~~~~~Y~~slywal~tlttvGygd~~~~~~~E~~f~i~i~i~G 410 (734)
..... .-.|+ +..|+||+|. ++.+|++|+|||++||||+|||+.+|+|..|++|+|++|++|
T Consensus 271 ~~l~~--~~~~~----~~~~~fg~~s------------~~~kY~~aLyw~l~tLstvG~g~~~s~~~~E~iFsi~~mi~G 332 (727)
T KOG0498|consen 271 GSLGR--LLSCY----NLSFTFGIYS------------LALKYVYALYWGLSTLSTVGYGLVHANNMGEKIFSIFIMLFG 332 (727)
T ss_pred ccccc--ccccC----cccccccchh------------HHHHHHHHHHHHhhHhhhccCCccCCCCcHHHHHHHHHHHHh
Confidence 21100 11222 3347888874 456999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhcCCChHHHHHhCCcchHHHH
Q 004712 411 LILFALLIGNMQTYLQSLTIRLEEMRIKRRDSEQWMHHRLLPPDLRERVRRYDQYKWLETRGVDEENLVQSLPKDLRRDI 490 (734)
Q Consensus 411 ~~lfa~lig~~~~~l~~~~~~~~e~~~k~~~~~~~m~~~~lp~~L~~rVr~y~~y~w~~~~~~~e~~ll~~Lp~~Lr~~I 490 (734)
+++||++||||++++|+.+.|.++||.|++|+++||++|+||++||+||++|+||+|..++|+||+++|++||++||+||
T Consensus 333 llL~A~lIGNmt~~iqs~tsR~~~~r~k~rd~e~~m~~~~LP~~LRqRi~~y~q~kw~~t~Gvdee~lL~~LP~~LR~dI 412 (727)
T KOG0498|consen 333 LLLFAYLIGNMTALLQSLTSRTEEMRDKMRDAEQWMSRRQLPPDLRQRIRRYEQYKWLATRGVDEEELLQSLPKDLRRDI 412 (727)
T ss_pred HHHHHHHHhhHHHhHHHHhHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhccCcCHHHHHHhCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCcccccCcHHHHHHHHhcCceEEeCCCCEEEecCCCCCEEEEEEEeEEEEEEecCCceeeeeeeeeCCC
Q 004712 491 KRHLCLALVRRVPLFENMDERLLDAICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEG 570 (734)
Q Consensus 491 ~~~l~~~ll~~v~~F~~ls~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~G 570 (734)
++|+|.++++++|+|+++|++++++||.++++..|+|||+|++|||++++||||.+|.+++.++++|.+ ++...|++|
T Consensus 413 ~~hL~~~lv~~vpLF~~md~~~L~al~~rlk~~~f~pge~iireGd~v~~myFI~rG~le~~~~~~g~~--~~~~~L~~G 490 (727)
T KOG0498|consen 413 KRHLCLDLVRKVPLFAGMDDGLLDALCSRLKPEYFTPGEYIIREGDPVTDMYFIVRGSLESITTDGGGF--FVVAILGPG 490 (727)
T ss_pred HHHHhHHHHhhCchhhcCCHHHHHHHHHHhhhhccCCCCeEEecCCccceeEEEEeeeEEEEEccCCce--EEEEEecCC
Confidence 999999999999999999999999999999999999999999999999999999999999999888744 448999999
Q ss_pred CEeechhhhhhcCCCCCCCCCCcceEEEEeccceeeEeCHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 004712 571 DFCGEELLTWALDPKSGVNLPSSTRTVRALKEVEAFALMAEELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAA 650 (734)
Q Consensus 571 d~fGe~~l~~~l~~~~~~~~p~st~tv~Alt~~ell~L~~~df~~l~~~~P~l~~~~l~~~~r~ys~~~r~~~~~~~q~~ 650 (734)
|+|||+.++|+++ .| +++||+|+|.|+++.|+++||++++++||+++++++++++|+|+++||+|+++++|++
T Consensus 491 d~~GeEl~~~~~~-~p------~t~TVralt~~el~~L~~~dL~~V~~~f~~~~~~~l~~~~r~~s~~~r~~aa~~iq~a 563 (727)
T KOG0498|consen 491 DFFGEELLTWCLD-LP------QTRTVRALTYCELFRLSADDLKEVLQQFRRLGSKFLQHTFRYYSHLWRTWAACFIQAA 563 (727)
T ss_pred CccchHHHHHHhc-CC------CCceeehhhhhhHHhccHHHHHHHHHHhHHHHHHHHHhHHHHhhhhhhhhhhhhHHHH
Confidence 9999888888874 12 4899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHHHHHhhHHHhHhhhhcccccCCCCCCCcchhhhHHHhHHHHHhhhhhhcccc-cccccccccCCCCCCCCCC
Q 004712 651 WRRYSKRKKMEQTRKEEEEEEASEGVQSSSTGGGSYSIGATFLATRFAANALRGVHRNRN-AKSARELVKLQKPPEPDFT 729 (734)
Q Consensus 651 ~~~~~~R~~~~~~~~aeer~~~~~~~~~~~~~~~~~~l~~~i~~sr~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 729 (734)
|+++.+|+....+...++....+ .++.+.++.++.+..++++|+|+.+.++.+.. +.....++.++||.||||+
T Consensus 564 ~r~~~~~~~~~~l~~~~~~~~~~-----~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~f~ 638 (727)
T KOG0498|consen 564 WRRHIKRKGEEELALEEEESAIR-----GDDRGSKSLLRAGILASRFAANGRPPLHTAASRGSSDCALLLLQKPADPDFS 638 (727)
T ss_pred HHHHHHhhccchhhhhcchhhhc-----cccccchhhhhcccccccccccCCCccccccccCccccccccCCCCCCCCcc
Confidence 99999999887776654433311 14567778999999999999999999887532 2244557899999999999
Q ss_pred Ccc
Q 004712 730 AED 732 (734)
Q Consensus 730 ~~~ 732 (734)
.++
T Consensus 639 ~~~ 641 (727)
T KOG0498|consen 639 DAE 641 (727)
T ss_pred ccc
Confidence 654
|
|
| >PLN03192 Voltage-dependent potassium channel; Provisional | Back alignment and domain information |
|---|
| >KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK09392 ftrB transcriptional activator FtrB; Provisional | Back alignment and domain information |
|---|
| >PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional | Back alignment and domain information |
|---|
| >PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional | Back alignment and domain information |
|---|
| >KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial | Back alignment and domain information |
|---|
| >PRK10402 DNA-binding transcriptional activator YeiL; Provisional | Back alignment and domain information |
|---|
| >PRK09391 fixK transcriptional regulator FixK; Provisional | Back alignment and domain information |
|---|
| >PRK13918 CRP/FNR family transcriptional regulator; Provisional | Back alignment and domain information |
|---|
| >COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins | Back alignment and domain information |
|---|
| >KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor | Back alignment and domain information |
|---|
| >smart00100 cNMP Cyclic nucleotide-monophosphate binding domain | Back alignment and domain information |
|---|
| >PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ] | Back alignment and domain information |
|---|
| >KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PLN02868 acyl-CoA thioesterase family protein | Back alignment and domain information |
|---|
| >COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria [] | Back alignment and domain information |
|---|
| >KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only] | Back alignment and domain information |
|---|
| >PRK10537 voltage-gated potassium channel; Provisional | Back alignment and domain information |
|---|
| >PF08412 Ion_trans_N: Ion transport protein N-terminal; InterPro: IPR013621 This domain is found to the N terminus of IPR005821 from INTERPRO in voltage- and cyclic nucleotide-gated K/Na ion channels | Back alignment and domain information |
|---|
| >KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ] | Back alignment and domain information |
|---|
| >KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only] | Back alignment and domain information |
|---|
| >KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle | Back alignment and domain information |
|---|
| >PRK11832 putative DNA-binding transcriptional regulator; Provisional | Back alignment and domain information |
|---|
| >KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG3827 consensus Inward rectifier K+ channel [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >PLN03223 Polycystin cation channel protein; Provisional | Back alignment and domain information |
|---|
| >KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 734 | ||||
| 1wgp_A | 137 | Solution Structure Of The Cnmp-Binding Domain From | 4e-61 | ||
| 3otf_A | 220 | Structural Basis For The Camp-Dependent Gating In H | 1e-12 | ||
| 4hbn_A | 205 | Crystal Structure Of The Human Hcn4 Channel C-termi | 2e-12 | ||
| 3u0z_A | 210 | Tetramerization Dynamics Of The C-Terminus Underlie | 1e-11 | ||
| 1q3e_A | 207 | Hcn2j 443-645 In The Presence Of Cgmp Length = 207 | 2e-11 | ||
| 3ffq_A | 202 | Hcn2i 443-640 Apo-State Length = 202 | 2e-11 | ||
| 3u10_A | 210 | Tetramerization Dynamics Of The C-Terminus Underlie | 2e-11 | ||
| 3u11_A | 210 | Tetramerization Dynamics Of The C-Terminus Underlie | 3e-11 | ||
| 2q0a_A | 200 | Structure And Rearrangements In The Carboxy-Termina | 3e-11 | ||
| 3bpz_A | 202 | Hcn2-I 443-460 E502k In The Presence Of Camp Length | 3e-11 | ||
| 2ptm_A | 198 | Structure And Rearrangements In The Carboxy-Termina | 4e-11 | ||
| 3etq_A | 204 | X-Ray Structure Of Cysteine-Free Fragment Of Mhcn2 | 8e-10 | ||
| 1q43_A | 207 | Hcn2i 443-640 In The Presence Of Camp, Selenomethio | 1e-09 | ||
| 3ukn_A | 212 | Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN | 2e-08 | ||
| 4f8a_A | 160 | Cyclic Nucleotide Binding-Homology Domain From Mous | 4e-04 |
| >pdb|1WGP|A Chain A, Solution Structure Of The Cnmp-Binding Domain From Arabidopsis Thaliana Cyclic Nucleotide-Regulated Ion Channel Length = 137 | Back alignment and structure |
|
| >pdb|3OTF|A Chain A, Structural Basis For The Camp-Dependent Gating In Human Hcn4 Channel Length = 220 | Back alignment and structure |
| >pdb|4HBN|A Chain A, Crystal Structure Of The Human Hcn4 Channel C-terminus Carrying The S672r Mutation Length = 205 | Back alignment and structure |
| >pdb|3U0Z|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies Isoform-Specific Camp-Gating In Hcn Channels Length = 210 | Back alignment and structure |
| >pdb|1Q3E|A Chain A, Hcn2j 443-645 In The Presence Of Cgmp Length = 207 | Back alignment and structure |
| >pdb|3FFQ|A Chain A, Hcn2i 443-640 Apo-State Length = 202 | Back alignment and structure |
| >pdb|3U10|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies Isoform-Specific Camp-Gating In Hcn Channels Length = 210 | Back alignment and structure |
| >pdb|3U11|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies Isoform-Specific Camp-Gating In Hcn Channels Length = 210 | Back alignment and structure |
| >pdb|2Q0A|A Chain A, Structure And Rearrangements In The Carboxy-Terminal Region Of Spih Channels Length = 200 | Back alignment and structure |
| >pdb|3BPZ|A Chain A, Hcn2-I 443-460 E502k In The Presence Of Camp Length = 202 | Back alignment and structure |
| >pdb|2PTM|A Chain A, Structure And Rearrangements In The Carboxy-Terminal Region Of Spih Channels Length = 198 | Back alignment and structure |
| >pdb|3ETQ|A Chain A, X-Ray Structure Of Cysteine-Free Fragment Of Mhcn2 C- Terminal Region From Amino Acids 443-630 Including C508n, C584s, And C601s Mutations Length = 204 | Back alignment and structure |
| >pdb|1Q43|A Chain A, Hcn2i 443-640 In The Presence Of Camp, Selenomethionine Derivative Length = 207 | Back alignment and structure |
| >pdb|3UKN|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2 21 SPACE Group Length = 212 | Back alignment and structure |
| >pdb|4F8A|A Chain A, Cyclic Nucleotide Binding-Homology Domain From Mouse Eag1 Potassium Channel Length = 160 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B Length = 212 | Back alignment and structure |
|---|
Score = 243 bits (623), Expect = 3e-76
Identities = 46/213 (21%), Positives = 90/213 (42%), Gaps = 17/213 (7%)
Query: 425 LQSLTIRLEEMRIKRRDSEQWMHHRLLPPDLRERVRRYDQYKWLETRGVDEENLVQSLPK 484
Q + R + +D + ++ LP L +R+ Q W G+D L++ P
Sbjct: 4 DQRMYSRRSLYHTRTKDLKDFIRVHRLPKALAQRMLECFQTTWSVNNGIDVSELLKDFPD 63
Query: 485 DLRRDIKRHLCLALVRRVPLFENMDERLLDAICERLKPCLFTDSTYIVREGDPVDEMLFI 544
+LR DI HL L+ ++PLFE+ L ++ +K +++R+GD + + F+
Sbjct: 64 ELRADIAMHLNKELL-QLPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFV 122
Query: 545 IRGRLESVTTDGGRSGFFNRGFLKEGDFCGEELLTWALDPKSGVNLPSSTRTVRALKEVE 604
G +E + + + L +GD G + LT K + V+AL +
Sbjct: 123 CSGSMEVLKDNTVLA------ILGKGDLIGSDSLTKEQVIK-------TNANVKALTYCD 169
Query: 605 AFALMAEELKFVAS---QFRRLHSRQVQHTFRF 634
+ + L+ V ++ + ++QH +
Sbjct: 170 LQYISLKGLREVLRLYPEYAQKFVSEIQHDLTY 202
|
| >2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus} Length = 198 | Back alignment and structure |
|---|
| >3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A* Length = 202 | Back alignment and structure |
|---|
| >1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2 Length = 137 | Back alignment and structure |
|---|
| >4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus} Length = 160 | Back alignment and structure |
|---|
| >1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A Length = 138 | Back alignment and structure |
|---|
| >4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} Length = 381 | Back alignment and structure |
|---|
| >4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} Length = 381 | Back alignment and structure |
|---|
| >3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens} Length = 142 | Back alignment and structure |
|---|
| >3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT} Length = 187 | Back alignment and structure |
|---|
| >2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* Length = 291 | Back alignment and structure |
|---|
| >2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* Length = 291 | Back alignment and structure |
|---|
| >1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 Length = 469 | Back alignment and structure |
|---|
| >1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 Length = 469 | Back alignment and structure |
|---|
| >3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} Length = 299 | Back alignment and structure |
|---|
| >3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} Length = 299 | Back alignment and structure |
|---|
| >3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} Length = 246 | Back alignment and structure |
|---|
| >3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} Length = 246 | Back alignment and structure |
|---|
| >2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa} Length = 154 | Back alignment and structure |
|---|
| >3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* Length = 416 | Back alignment and structure |
|---|
| >3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* Length = 416 | Back alignment and structure |
|---|
| >2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3} Length = 149 | Back alignment and structure |
|---|
| >3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B* Length = 161 | Back alignment and structure |
|---|
| >4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A* Length = 333 | Back alignment and structure |
|---|
| >3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A* Length = 139 | Back alignment and structure |
|---|
| >3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300} Length = 231 | Back alignment and structure |
|---|
| >3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli} Length = 260 | Back alignment and structure |
|---|
| >3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A* Length = 227 | Back alignment and structure |
|---|
| >2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens} Length = 134 | Back alignment and structure |
|---|
| >3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa} Length = 227 | Back alignment and structure |
|---|
| >2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A* Length = 220 | Back alignment and structure |
|---|
| >3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B* Length = 154 | Back alignment and structure |
|---|
| >4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus} Length = 216 | Back alignment and structure |
|---|
| >1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2 Length = 232 | Back alignment and structure |
|---|
| >1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2 Length = 213 | Back alignment and structure |
|---|
| >3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A* Length = 237 | Back alignment and structure |
|---|
| >1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1 Length = 222 | Back alignment and structure |
|---|
| >3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV} Length = 230 | Back alignment and structure |
|---|
| >3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A* Length = 355 | Back alignment and structure |
|---|
| >3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A Length = 250 | Back alignment and structure |
|---|
| >3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ... Length = 210 | Back alignment and structure |
|---|
| >3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656} Length = 220 | Back alignment and structure |
|---|
| >2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2 Length = 232 | Back alignment and structure |
|---|
| >2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2 Length = 207 | Back alignment and structure |
|---|
| >3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A* Length = 243 | Back alignment and structure |
|---|
| >3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans} Length = 139 | Back alignment and structure |
|---|
| >3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A Length = 166 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 734 | |||
| 3beh_A | 355 | MLL3241 protein; transmembrane protein, membrane p | 100.0 | |
| 3ukn_A | 212 | Novel protein similar to vertebrate potassium VOL | 99.97 | |
| 2ptm_A | 198 | Hyperpolarization-activated (IH) channel; ION chan | 99.97 | |
| 3bpz_A | 202 | Potassium/sodium hyperpolarization-activated cycli | 99.97 | |
| 1orq_C | 223 | Potassium channel; voltage-dependent, KVAP, FAB co | 99.86 | |
| 4f8a_A | 160 | Potassium voltage-gated channel subfamily H membe; | 99.8 | |
| 3d0s_A | 227 | Transcriptional regulatory protein; CAMP receptor | 99.77 | |
| 3e97_A | 231 | Transcriptional regulator, CRP/FNR family; YP_6044 | 99.77 | |
| 2r9r_B | 514 | Paddle chimera voltage gated potassium channel KV; | 99.77 | |
| 4ev0_A | 216 | Transcription regulator, CRP family; CAMP binding, | 99.76 | |
| 2gau_A | 232 | Transcriptional regulator, CRP/FNR family; structu | 99.75 | |
| 3dn7_A | 194 | Cyclic nucleotide binding regulatory protein; stru | 99.75 | |
| 3fx3_A | 237 | Cyclic nucleotide-binding protein; helix_TURN_heli | 99.75 | |
| 3gyd_A | 187 | CNMP-BD protein, cyclic nucleotide-binding domain; | 99.75 | |
| 3dv8_A | 220 | Transcriptional regulator, CRP/FNR family; cyclic | 99.74 | |
| 2fmy_A | 220 | COOA, carbon monoxide oxidation system transcripti | 99.74 | |
| 3dkw_A | 227 | DNR protein; CRP-FNR, HTH, beta barrel, dimerizati | 99.73 | |
| 3iwz_A | 230 | CAP-like, catabolite activation-like protein; XCC, | 99.72 | |
| 3ocp_A | 139 | PRKG1 protein; serine/threonine kinase, TF2I and I | 99.7 | |
| 1ft9_A | 222 | Carbon monoxide oxidation system transcription reg | 99.7 | |
| 3mdp_A | 142 | Cyclic nucleotide-binding domain (CNMP-BD) protei; | 99.7 | |
| 3ryp_A | 210 | Catabolite gene activator; CAMP receptor protein ( | 99.69 | |
| 3idb_B | 161 | CAMP-dependent protein kinase type II-beta regulat | 99.69 | |
| 1wgp_A | 137 | Probable cyclic nucleotide-gated ION channel 6; cy | 99.68 | |
| 2oz6_A | 207 | Virulence factor regulator; winged helix, helix-tu | 99.68 | |
| 2pqq_A | 149 | Putative transcriptional regulator; APC7345, strep | 99.68 | |
| 1zyb_A | 232 | Transcription regulator, CRP family; NP_813211.1, | 99.68 | |
| 3kcc_A | 260 | Catabolite gene activator; helix-turn-helix, CAMP, | 99.67 | |
| 2z69_A | 154 | DNR protein; beta barrel, dimerization helix, tran | 99.65 | |
| 3e6c_C | 250 | CPRK, cyclic nucleotide-binding protein; CPRK, hal | 99.63 | |
| 1o5l_A | 213 | Transcriptional regulator, CRP family; TM1171, str | 99.63 | |
| 3la7_A | 243 | Global nitrogen regulator; activator, DNA-binding, | 99.63 | |
| 2bgc_A | 238 | PRFA; bacterial infection, human pathogen, transcr | 99.63 | |
| 1vp6_A | 138 | CNBD, cyclic-nucleotide binding domain of mesorhiz | 99.62 | |
| 3pna_A | 154 | CAMP-dependent protein kinase type I-alpha regula | 99.6 | |
| 3shr_A | 299 | CGMP-dependent protein kinase 1; cyclic nucleotide | 99.6 | |
| 4ava_A | 333 | Lysine acetyltransferase; allosteric regulation, d | 99.55 | |
| 2d93_A | 134 | RAP guanine nucleotide exchange factor 6; CNMP_bin | 99.54 | |
| 3shr_A | 299 | CGMP-dependent protein kinase 1; cyclic nucleotide | 99.54 | |
| 2qcs_B | 291 | CAMP-dependent protein kinase type I-alpha regula | 99.51 | |
| 2a9h_A | 155 | Voltage-gated potassium channel; potassium channel | 99.5 | |
| 3of1_A | 246 | CAMP-dependent protein kinase regulatory subunit; | 99.5 | |
| 3tnp_B | 416 | CAMP-dependent protein kinase type II-beta regula | 99.5 | |
| 3b02_A | 195 | Transcriptional regulator, CRP family; structural | 99.49 | |
| 2qcs_B | 291 | CAMP-dependent protein kinase type I-alpha regula | 99.49 | |
| 3of1_A | 246 | CAMP-dependent protein kinase regulatory subunit; | 99.48 | |
| 3vou_A | 148 | ION transport 2 domain protein, voltage-gated SOD | 99.46 | |
| 4din_B | 381 | CAMP-dependent protein kinase type I-beta regulat | 99.46 | |
| 4din_B | 381 | CAMP-dependent protein kinase type I-beta regulat | 99.43 | |
| 4h33_A | 137 | LMO2059 protein; bilayers, KVLM, lipidic cubic pha | 99.42 | |
| 3tnp_B | 416 | CAMP-dependent protein kinase type II-beta regula | 99.42 | |
| 2zcw_A | 202 | TTHA1359, transcriptional regulator, FNR/CRP famil | 99.4 | |
| 1o7f_A | 469 | CAMP-dependent RAP1 guanine-nucleotide exchange fa | 99.38 | |
| 2ih3_C | 122 | Voltage-gated potassium channel; ION channel D-ami | 99.37 | |
| 1o7f_A | 469 | CAMP-dependent RAP1 guanine-nucleotide exchange fa | 99.36 | |
| 4f7z_A | 999 | RAP guanine nucleotide exchange factor 4; cyclic n | 99.27 | |
| 3eff_K | 139 | Voltage-gated potassium channel; FULL length KCSA, | 99.25 | |
| 3cf6_E | 694 | RAP guanine nucleotide exchange factor (GEF) 4; EP | 99.25 | |
| 3rvy_A | 285 | ION transport protein; tetrameric ION channel, vol | 99.17 | |
| 4f7z_A | 999 | RAP guanine nucleotide exchange factor 4; cyclic n | 99.14 | |
| 2q67_A | 114 | Potassium channel protein; inverted teepee, helix | 99.06 | |
| 3ouf_A | 97 | Potassium channel protein; ION channel, membrane, | 99.03 | |
| 2k1e_A | 103 | Water soluble analogue of potassium channel, KCSA; | 98.99 | |
| 3ldc_A | 82 | Calcium-gated potassium channel MTHK; transmembran | 98.94 | |
| 3pjs_K | 166 | KCSA, voltage-gated potassium channel; ION channel | 98.83 | |
| 1xl4_A | 301 | Inward rectifier potassium channel; integral membr | 98.65 | |
| 3um7_A | 309 | Potassium channel subfamily K member 4; potassium | 98.63 | |
| 1p7b_A | 333 | Integral membrane channel and cytosolic domains; t | 98.56 | |
| 2qks_A | 321 | KIR3.1-prokaryotic KIR channel chimera; G-protein | 98.53 | |
| 3sya_A | 340 | G protein-activated inward rectifier potassium CH; | 98.49 | |
| 4gx0_A | 565 | TRKA domain protein; membrane protein, ION channel | 98.32 | |
| 3um7_A | 309 | Potassium channel subfamily K member 4; potassium | 98.29 | |
| 3ukm_A | 280 | Potassium channel subfamily K member 1; membrane p | 98.27 | |
| 3ukm_A | 280 | Potassium channel subfamily K member 1; membrane p | 98.26 | |
| 3spc_A | 343 | Inward-rectifier K+ channel KIR2.2; PIP, membrane | 98.25 | |
| 4dxw_A | 229 | Navrh, ION transport protein; tetrameric, voltage- | 98.01 | |
| 1lnq_A | 336 | MTHK channels, potassium channel related protein; | 97.93 | |
| 2kyh_A | 147 | KVAP, voltage-gated potassium channel; ION channel | 97.48 | |
| 1ors_C | 132 | Potassium channel; voltage-dependent, voltage sens | 97.03 |
| >3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-33 Score=303.15 Aligned_cols=188 Identities=23% Similarity=0.357 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHhHhcccccCCCCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhC
Q 004712 370 FSKYCYCLWWGLQNLSTLGQGLQTSTFPGEVIFSIALAIFGLILFALLIGNMQTYLQSLTIRLEEMRIKRRDSEQWMHHR 449 (734)
Q Consensus 370 ~~~Y~~slywal~tlttvGygd~~~~~~~E~~f~i~i~i~G~~lfa~lig~~~~~l~~~~~~~~e~~~k~~~~~~~m~~~ 449 (734)
+..|..|+||+++||||+||||++|.+..|++++++++++|++++++++|.+.+.++.... +
T Consensus 159 f~~~~~s~y~~~~t~ttvGygd~~p~t~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~------~------------ 220 (355)
T 3beh_A 159 FGSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFGLWAGILATGFYQEVR------R------------ 220 (355)
T ss_dssp HSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------H------------
T ss_pred cccHHHHHHHHHhheeecCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------H------------
Confidence 4568899999999999999999999999999999999999999999999999877643211 0
Q ss_pred CCChhHHHHHHHHHHHHHHHhcCCChHHHHHhCCcchHHHHHHHHHHHHHhcCcccccCcHHHHHHHHhcCceEEeCCCC
Q 004712 450 LLPPDLRERVRRYDQYKWLETRGVDEENLVQSLPKDLRRDIKRHLCLALVRRVPLFENMDERLLDAICERLKPCLFTDST 529 (734)
Q Consensus 450 ~lp~~L~~rVr~y~~y~w~~~~~~~e~~ll~~Lp~~Lr~~I~~~l~~~ll~~v~~F~~ls~~~l~~l~~~l~~~~~~kge 529 (734)
+++. ...+.++++|+|.+++++++++++..++++.++|||
T Consensus 221 ----------~~~~------------------------------~~~~~l~~~~lf~~ls~~~l~~l~~~~~~~~~~~ge 260 (355)
T 3beh_A 221 ----------GDFV------------------------------RNWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGA 260 (355)
T ss_dssp ----------HHHH------------------------------HHHC--------------------------------
T ss_pred ----------Hhhc------------------------------ccchhhhcccccccCCHHHHHHHHHhceEEEECCCC
Confidence 0000 023578889999999999999999999999999999
Q ss_pred EEEecCCCCCEEEEEEEeEEEEEEecCCceeeeeeeeeCCCCEeechhhhhhcCCCCCCCCCCcceEEEEeccceeeEeC
Q 004712 530 YIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCGEELLTWALDPKSGVNLPSSTRTVRALKEVEAFALM 609 (734)
Q Consensus 530 ~I~~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~p~st~tv~Alt~~ell~L~ 609 (734)
.|+++||+++++|||.+|.++++..+ + ..+++|++|||.+++ .+.+ ++.+++|.++|+++.++
T Consensus 261 ~I~~~G~~~~~ly~I~~G~v~v~~~~---~-----~~l~~G~~fGe~~~l---~~~~------~~~~~~A~~~~~l~~i~ 323 (355)
T 3beh_A 261 VICRIGEPGDRMFFVVEGSVSVATPN---P-----VELGPGAFFGEMALI---SGEP------RSATVSAATTVSLLSLH 323 (355)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEeCCCcCceEEEEEeeEEEEEECC---e-----eEECCCCEEeehHHh---CCCC------cceEEEECccEEEEEEe
Confidence 99999999999999999999997654 1 378999999999873 3333 67899999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHH
Q 004712 610 AEELKFVASQFRRLHSRQVQHTF 632 (734)
Q Consensus 610 ~~df~~l~~~~P~l~~~~l~~~~ 632 (734)
+++|.++++++|++.....+...
T Consensus 324 ~~~f~~ll~~~p~~~~~l~~~l~ 346 (355)
T 3beh_A 324 SADFQMLCSSSPEIAEIFRKTAL 346 (355)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHHCHHHHHHHHHHHH
Confidence 99999999999987765544433
|
| >3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B | Back alignment and structure |
|---|
| >2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus} | Back alignment and structure |
|---|
| >3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A* | Back alignment and structure |
|---|
| >1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A | Back alignment and structure |
|---|
| >4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus} | Back alignment and structure |
|---|
| >3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A* | Back alignment and structure |
|---|
| >3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300} | Back alignment and structure |
|---|
| >2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B* | Back alignment and structure |
|---|
| >4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus} | Back alignment and structure |
|---|
| >2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2 | Back alignment and structure |
|---|
| >3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
| >3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A* | Back alignment and structure |
|---|
| >3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
| >3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656} | Back alignment and structure |
|---|
| >2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A* | Back alignment and structure |
|---|
| >3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
| >3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
| >3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A* | Back alignment and structure |
|---|
| >1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1 | Back alignment and structure |
|---|
| >3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens} | Back alignment and structure |
|---|
| >3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ... | Back alignment and structure |
|---|
| >3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B* | Back alignment and structure |
|---|
| >1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2 | Back alignment and structure |
|---|
| >2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2 | Back alignment and structure |
|---|
| >2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3} | Back alignment and structure |
|---|
| >1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2 | Back alignment and structure |
|---|
| >3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli} | Back alignment and structure |
|---|
| >2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
| >3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A | Back alignment and structure |
|---|
| >1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2 | Back alignment and structure |
|---|
| >3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A* | Back alignment and structure |
|---|
| >2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A | Back alignment and structure |
|---|
| >1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A | Back alignment and structure |
|---|
| >3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B* | Back alignment and structure |
|---|
| >3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} | Back alignment and structure |
|---|
| >4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A* | Back alignment and structure |
|---|
| >2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} | Back alignment and structure |
|---|
| >2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* | Back alignment and structure |
|---|
| >2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1 | Back alignment and structure |
|---|
| >3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* | Back alignment and structure |
|---|
| >3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A | Back alignment and structure |
|---|
| >2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* | Back alignment and structure |
|---|
| >3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis} | Back alignment and structure |
|---|
| >4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} | Back alignment and structure |
|---|
| >4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} | Back alignment and structure |
|---|
| >4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A | Back alignment and structure |
|---|
| >3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* | Back alignment and structure |
|---|
| >2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus} | Back alignment and structure |
|---|
| >1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 | Back alignment and structure |
|---|
| >2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ... | Back alignment and structure |
|---|
| >1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 | Back alignment and structure |
|---|
| >4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E | Back alignment and structure |
|---|
| >3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans} | Back alignment and structure |
|---|
| >3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus} | Back alignment and structure |
|---|
| >3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A* | Back alignment and structure |
|---|
| >4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E | Back alignment and structure |
|---|
| >2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A | Back alignment and structure |
|---|
| >3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A | Back alignment and structure |
|---|
| >2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A | Back alignment and structure |
|---|
| >3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A | Back alignment and structure |
|---|
| >3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A | Back alignment and structure |
|---|
| >1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A* | Back alignment and structure |
|---|
| >3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
| >1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A* | Back alignment and structure |
|---|
| >2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans} | Back alignment and structure |
|---|
| >3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A* | Back alignment and structure |
|---|
| >4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* | Back alignment and structure |
|---|
| >3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
| >3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens} | Back alignment and structure |
|---|
| >3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens} | Back alignment and structure |
|---|
| >3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A* | Back alignment and structure |
|---|
| >4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114} | Back alignment and structure |
|---|
| >1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A | Back alignment and structure |
|---|
| >2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix} | Back alignment and structure |
|---|
| >1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1 | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 734 | ||||
| d1wgpa_ | 137 | b.82.3.2 (A:) Probable cyclic nucleotide-gated ion | 1e-26 | |
| d1q3ea_ | 193 | b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus mu | 2e-16 | |
| d1ne6a2 | 132 | b.82.3.2 (A:245-376) Regulatory subunit of Protein | 2e-12 | |
| d1cx4a2 | 147 | b.82.3.2 (A:266-412) Regulatory subunit of Protein | 3e-09 | |
| d1cx4a1 | 136 | b.82.3.2 (A:130-265) Regulatory subunit of Protein | 1e-08 | |
| d1o7fa2 | 155 | b.82.3.2 (A:13-167) Regulatory domain of Epac2, do | 2e-08 | |
| d1vp6a_ | 133 | b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizo | 2e-08 | |
| d1lnqa2 | 80 | f.14.1.1 (A:19-98) Potassium channel-related prote | 9e-07 | |
| d1ne6a1 | 136 | b.82.3.2 (A:109-244) Regulatory subunit of Protein | 1e-06 | |
| d1r3jc_ | 103 | f.14.1.1 (C:) Potassium channel protein {Streptomy | 5e-06 | |
| d1xl4a2 | 116 | f.14.1.1 (A:23-138) Inward rectifier potassium cha | 2e-05 | |
| d1o7fa3 | 124 | b.82.3.2 (A:322-445) Regulatory domain of Epac2, d | 2e-05 | |
| d1p7ba2 | 116 | f.14.1.1 (A:36-151) Inward rectifier potassium cha | 2e-04 | |
| d2gaua2 | 142 | b.82.3.2 (A:10-151) Transcriptional regulator PG03 | 0.001 | |
| d1i5za2 | 132 | b.82.3.2 (A:6-137) Catabolite gene activator prote | 0.002 |
| >d1wgpa_ b.82.3.2 (A:) Probable cyclic nucleotide-gated ion channel 6 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 137 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Double-stranded beta-helix superfamily: cAMP-binding domain-like family: cAMP-binding domain domain: Probable cyclic nucleotide-gated ion channel 6 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 103 bits (258), Expect = 1e-26
Identities = 110/128 (85%), Positives = 120/128 (93%)
Query: 497 ALVRRVPLFENMDERLLDAICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDG 556
+ VRRVPLFENMDERLLDAICERLKPCLFT+ +Y+VREGDPV+EMLFIIRGRLESVTTDG
Sbjct: 6 SGVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDG 65
Query: 557 GRSGFFNRGFLKEGDFCGEELLTWALDPKSGVNLPSSTRTVRALKEVEAFALMAEELKFV 616
GRSGF+NR LKEGDFCG+ELLTWALDPKSG NLPSSTRTV+AL EVEAFAL+A+ELKFV
Sbjct: 66 GRSGFYNRSLLKEGDFCGDELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFV 125
Query: 617 ASQFRRLH 624
ASQFRR
Sbjct: 126 ASQFRRSG 133
|
| >d1q3ea_ b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus musculus) [TaxId: 10090]} Length = 193 | Back information, alignment and structure |
|---|
| >d1ne6a2 b.82.3.2 (A:245-376) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} Length = 132 | Back information, alignment and structure |
|---|
| >d1cx4a2 b.82.3.2 (A:266-412) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 147 | Back information, alignment and structure |
|---|
| >d1cx4a1 b.82.3.2 (A:130-265) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 136 | Back information, alignment and structure |
|---|
| >d1o7fa2 b.82.3.2 (A:13-167) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 155 | Back information, alignment and structure |
|---|
| >d1vp6a_ b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizobium loti [TaxId: 381]} Length = 133 | Back information, alignment and structure |
|---|
| >d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} Length = 80 | Back information, alignment and structure |
|---|
| >d1ne6a1 b.82.3.2 (A:109-244) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} Length = 136 | Back information, alignment and structure |
|---|
| >d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} Length = 103 | Back information, alignment and structure |
|---|
| >d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]} Length = 116 | Back information, alignment and structure |
|---|
| >d1o7fa3 b.82.3.2 (A:322-445) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 124 | Back information, alignment and structure |
|---|
| >d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]} Length = 116 | Back information, alignment and structure |
|---|
| >d2gaua2 b.82.3.2 (A:10-151) Transcriptional regulator PG0396, N-terminal domain {Porphyromonas gingivalis [TaxId: 837]} Length = 142 | Back information, alignment and structure |
|---|
| >d1i5za2 b.82.3.2 (A:6-137) Catabolite gene activator protein, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 132 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 734 | |||
| d1q3ea_ | 193 | HCN pacemaker channel {Mouse (Mus musculus) [TaxId | 99.96 | |
| d1wgpa_ | 137 | Probable cyclic nucleotide-gated ion channel 6 {Th | 99.81 | |
| d1ne6a2 | 132 | Regulatory subunit of Protein kinase A {Cow (Bos t | 99.76 | |
| d1cx4a2 | 147 | Regulatory subunit of Protein kinase A {Rat (Rattu | 99.73 | |
| d1cx4a1 | 136 | Regulatory subunit of Protein kinase A {Rat (Rattu | 99.72 | |
| d1vp6a_ | 133 | Putative ion channel CnbD {Mesorhizobium loti [Tax | 99.68 | |
| d1zyba2 | 147 | Probable transcription regulator BT4300, N-termina | 99.67 | |
| d1ne6a1 | 136 | Regulatory subunit of Protein kinase A {Cow (Bos t | 99.67 | |
| d1o7fa2 | 155 | Regulatory domain of Epac2, domains 1 and 3 {Mouse | 99.66 | |
| d2gaua2 | 142 | Transcriptional regulator PG0396, N-terminal domai | 99.64 | |
| d1ft9a2 | 132 | CO-sensing protein CooA, N-terminal domain {Rhodos | 99.63 | |
| d1o7fa3 | 124 | Regulatory domain of Epac2, domains 1 and 3 {Mouse | 99.63 | |
| d1i5za2 | 132 | Catabolite gene activator protein, N-terminal doma | 99.62 | |
| d2oz6a2 | 134 | Cyclic AMP receptor-like protein Vfr {Pseudomonas | 99.61 | |
| d3e5ua2 | 139 | Chlorophenol reduction protein CprK {Desulfitobact | 99.53 | |
| d1o5la1 | 129 | CRP-like transcriptional regulator TM1171, N-termi | 99.53 | |
| d2zcwa2 | 112 | Transcriptional regulator TTHA1359, N-terminal dom | 99.38 | |
| d1r3jc_ | 103 | Potassium channel protein {Streptomyces coelicolor | 99.22 | |
| d1xl4a2 | 116 | Inward rectifier potassium channel kirbac3.1 {Magn | 99.05 | |
| d1p7ba2 | 116 | Inward rectifier potassium channel Kirbac1.1 {Burk | 98.93 | |
| d1lnqa2 | 80 | Potassium channel-related protein MthK {Archaeon M | 98.59 | |
| d1orsc_ | 132 | Potassium channel KVAP {Archaeon Aeropyrum pernix | 96.92 | |
| d2h8pc1 | 57 | Potassium channel protein {Streptomyces coelicolor | 96.33 | |
| d2bgca2 | 131 | Listeriolysin regulatory protein PrfA, N-terminal | 87.92 | |
| d1yhfa1 | 112 | Hypothetical protein SPy1581 {Streptococcus pyogen | 83.17 |
| >d1q3ea_ b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Double-stranded beta-helix superfamily: cAMP-binding domain-like family: cAMP-binding domain domain: HCN pacemaker channel species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.96 E-value=5.5e-29 Score=245.29 Aligned_cols=183 Identities=27% Similarity=0.437 Sum_probs=166.4
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhcCCChHHHHHhCCcchHHHHHHHHHHHHHhcCcccccCc
Q 004712 430 IRLEEMRIKRRDSEQWMHHRLLPPDLRERVRRYDQYKWLETRGVDEENLVQSLPKDLRRDIKRHLCLALVRRVPLFENMD 509 (734)
Q Consensus 430 ~~~~e~~~k~~~~~~~m~~~~lp~~L~~rVr~y~~y~w~~~~~~~e~~ll~~Lp~~Lr~~I~~~l~~~ll~~v~~F~~ls 509 (734)
++.++|+++++.+++||+.+++|++|+.||++|++|.|. .++.+++++++.||++|+.++..+++.++++++|+|.+++
T Consensus 2 s~~~~f~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~-~~~~~~~~i~~~lp~~l~~~i~~~~~~~~l~~~~~F~~~~ 80 (193)
T d1q3ea_ 2 SSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQ-GKMFDEDSILGELNGPLREEIVNFNCRKLVASMPLFANAD 80 (193)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHT-TCCCCHHHHHHHSCHHHHHHHHHHHTHHHHHHCHHHHTSC
T ss_pred hhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhh-cccccHHHHHHHCCcchhHHHHHHHHHHHHhcchHHHhhh
Confidence 567899999999999999999999999999999999996 4788999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCceEEeCCCCEEEecCCCCCEEEEEEEeEEEEEEecCCceeeeeeeeeCCCCEeechhhhhhcCCCCCCC
Q 004712 510 ERLLDAICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCGEELLTWALDPKSGVN 589 (734)
Q Consensus 510 ~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~ 589 (734)
+.++..|+..+++..|.||++|+++||+++++|||.+|.|+++.. ++. ...+++|++|||.+++. +.+
T Consensus 81 ~~~l~~l~~~~~~~~~~~g~~I~~~g~~~~~ly~i~~G~v~v~~~-~~~-----~~~l~~G~~fGe~~~~~---~~~--- 148 (193)
T d1q3ea_ 81 PNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTK-GNK-----EMKLSDGSYFGEICLLT---RGR--- 148 (193)
T ss_dssp HHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEECCEEEEC--CCC-----EEEECTTCEECHHHHHH---CSB---
T ss_pred HHHHHHHHHHHHHHhhccCceecccCCCCcceeEeeeeeEEeecC-Ccc-----eeeeccceeeeeeeccC---CCc---
Confidence 999999999999999999999999999999999999999998754 333 45799999999998852 223
Q ss_pred CCCcceEEEEeccceeeEeCHHHHHHHHHHhHHHHHHHH
Q 004712 590 LPSSTRTVRALKEVEAFALMAEELKFVASQFRRLHSRQV 628 (734)
Q Consensus 590 ~p~st~tv~Alt~~ell~L~~~df~~l~~~~P~l~~~~l 628 (734)
++++++|+++|+++.|++++|.++++++|++..+..
T Consensus 149 ---~~~~~~a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~ 184 (193)
T d1q3ea_ 149 ---RTASVRADTYCRLYSLSVDNFNEVLEEYPMMRRAFE 184 (193)
T ss_dssp ---CSSEEEESSCEEEEEEEHHHHHHHHHHSGGGHHHHH
T ss_pred ---ccccceecCceEEEEEeHHHHHHHHHHCHHHHHHHH
Confidence 678999999999999999999999999997655443
|
| >d1wgpa_ b.82.3.2 (A:) Probable cyclic nucleotide-gated ion channel 6 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d1ne6a2 b.82.3.2 (A:245-376) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
| >d1cx4a2 b.82.3.2 (A:266-412) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d1cx4a1 b.82.3.2 (A:130-265) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d1vp6a_ b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizobium loti [TaxId: 381]} | Back information, alignment and structure |
|---|
| >d1zyba2 b.82.3.2 (A:1-147) Probable transcription regulator BT4300, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
| >d1ne6a1 b.82.3.2 (A:109-244) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
| >d1o7fa2 b.82.3.2 (A:13-167) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d2gaua2 b.82.3.2 (A:10-151) Transcriptional regulator PG0396, N-terminal domain {Porphyromonas gingivalis [TaxId: 837]} | Back information, alignment and structure |
|---|
| >d1ft9a2 b.82.3.1 (A:2-133) CO-sensing protein CooA, N-terminal domain {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
| >d1o7fa3 b.82.3.2 (A:322-445) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1i5za2 b.82.3.2 (A:6-137) Catabolite gene activator protein, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d2oz6a2 b.82.3.2 (A:9-142) Cyclic AMP receptor-like protein Vfr {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
| >d3e5ua2 b.82.3.2 (A:9-147) Chlorophenol reduction protein CprK {Desulfitobacterium hafniense [TaxId: 49338]} | Back information, alignment and structure |
|---|
| >d1o5la1 b.82.3.2 (A:1-129) CRP-like transcriptional regulator TM1171, N-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
| >d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]} | Back information, alignment and structure |
|---|
| >d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]} | Back information, alignment and structure |
|---|
| >d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
| >d1orsc_ f.14.1.1 (C:) Potassium channel KVAP {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
| >d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
| >d2bgca2 b.82.3.3 (A:7-137) Listeriolysin regulatory protein PrfA, N-terminal domain {Bacteria (Listeria monocytogenes) [TaxId: 1639]} | Back information, alignment and structure |
|---|
| >d1yhfa1 b.82.1.9 (A:1-112) Hypothetical protein SPy1581 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|