Citrus Sinensis ID: 004721
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 733 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SZ11 | 759 | Probable glycerophosphory | yes | no | 0.901 | 0.870 | 0.609 | 0.0 | |
| Q9FJ62 | 766 | Probable glycerophosphory | no | no | 0.909 | 0.870 | 0.605 | 0.0 | |
| Q7Y208 | 763 | Probable glycerophosphory | no | no | 0.888 | 0.853 | 0.595 | 0.0 | |
| P96236 | 274 | Probable glycerophosphory | yes | no | 0.087 | 0.233 | 0.409 | 0.0003 |
| >sp|Q9SZ11|GLPQ2_ARATH Probable glycerophosphoryl diester phosphodiesterase 2 OS=Arabidopsis thaliana GN=GPDL2 PE=1 SV=3 | Back alignment and function desciption |
|---|
Score = 863 bits (2229), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 409/671 (60%), Positives = 522/671 (77%), Gaps = 10/671 (1%)
Query: 55 GLLLVSALVVLHCGVI------AQVSAQGSNATSRWQTLTGDPPFVVARGGFSGIFPDSS 108
GLL S+L L CGVI AQ+ AQ S W TLTGDPP V+ARGGFSG+FPDSS
Sbjct: 3 GLLRASSL--LLCGVILIQLLAAQIHAQSKKPKSPWPTLTGDPPLVIARGGFSGLFPDSS 60
Query: 109 SIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVP 168
AY+ ++TS P +LWCDVQLTKD GICFPDL + N+S+I ++ T+QK+Y VNGVP
Sbjct: 61 YDAYNFAILTSVPDAVLWCDVQLTKDALGICFPDLTMRNSSSIEAVYPTRQKSYPVNGVP 120
Query: 169 TPGWFSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKPPGLWLNIQHDA 228
T GWF+ID++L DL ++ L +G+ SR++KFDGN I+TVQ ++ Q+KP WLN+QHDA
Sbjct: 121 TSGWFTIDFSLKDLKDVNLIRGILSRSEKFDGNSNPIMTVQSVSTQMKPSFFWLNVQHDA 180
Query: 229 FYAQHNLSMRSFVLSVSRSVVVNYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPT 288
FYAQHNLSM SF+++ S++V++++ISSPEVNF + IA RF + LVFRFLG+ E EPT
Sbjct: 181 FYAQHNLSMSSFLVAASKTVLIDFISSPEVNFFKKIAGRFGRNGPSLVFRFLGQDEFEPT 240
Query: 289 TNQTYGSLLKNLTFIKTFASGILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNF 348
TN+TYGS+L NLTF+KTFASGILVPK YI P+D+ YLLPHT++V DAHK LEVF S F
Sbjct: 241 TNRTYGSILSNLTFVKTFASGILVPKSYILPLDDQQYLLPHTSLVQDAHKAGLEVFVSGF 300
Query: 349 ANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPSAAVDCFAHLGKNASKSANL 408
ANDI I+ +YS+DP++EYLSF+DNG+FSVDGVLSDFP+T SA++DCF+H+G+NA+K +
Sbjct: 301 ANDIDIAHDYSFDPVSEYLSFVDNGNFSVDGVLSDFPITASASLDCFSHVGRNATKQVDF 360
Query: 409 LVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQS 468
LVI+K+GASGDYP CT+LAY+KAI DG D IDC VQ+S DG PFCLS I+L NST + +
Sbjct: 361 LVITKDGASGDYPGCTDLAYKKAIKDGADVIDCSVQLSSDGTPFCLSSIDLGNSTTVSLT 420
Query: 469 KFNSITTTIPEIMAGSGIFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLS 528
F + +TT+PE+ + I++FSL W EIQTL P ISNPY LFRNPK KNAGK LS
Sbjct: 421 AFRNRSTTVPELGSLGAIYTFSLTWAEIQTLTPAISNPYRVTSLFRNPKQKNAGKLFSLS 480
Query: 529 DFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEALGNAGYNKQTALKVMIQSTD 588
DFL +AKN+ SLSGVLIS+ENA YL E+QG+ V +V++ L GY+ TA KVMIQST+
Sbjct: 481 DFLSLAKNSTSLSGVLISVENAAYLREEQGLDVVKAVLDTLTQTGYSNSTATKVMIQSTN 540
Query: 589 SSVLMKLREKTSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNSAFITSAT 648
SSVL+ ++++ YE VYKV+ENIRD L+ IEDIKKFAD+VV+ K SV+P+ +FIT+ T
Sbjct: 541 SSVLVDFKKQSQYETVYKVEENIRDILDSAIEDIKKFADAVVIQKLSVFPVAQSFITTQT 600
Query: 649 DIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPMTAARY 708
++V++LQ +LPVYVE F NEF+SQ +DFF+D TVEIN+Y GAGI+G ITEFP TAARY
Sbjct: 601 NVVEKLQKSQLPVYVELFQNEFLSQPYDFFADATVEINSYITGAGINGTITEFPFTAARY 660
Query: 709 RSKLV--RKQT 717
+ L RK+T
Sbjct: 661 KRNLCLGRKET 671
|
Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 1EC: .EC: 4EC: .EC: 4EC: 6 |
| >sp|Q9FJ62|GLPQ1_ARATH Probable glycerophosphoryl diester phosphodiesterase 1 OS=Arabidopsis thaliana GN=GPDL1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 852 bits (2201), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 410/677 (60%), Positives = 515/677 (76%), Gaps = 10/677 (1%)
Query: 48 MCNTR---ALGLLLVSALVVLHCGVIAQVSAQ--GSNATSRWQTLTGDPPFVVARGGFSG 102
M N R + +L S + L +I +S Q + S WQTLTGD P V+ARGGFSG
Sbjct: 1 MINMRDNPTMHVLQASKFLFLALILIQLLSTQLFAQRSKSPWQTLTGDAPLVIARGGFSG 60
Query: 103 IFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNY 162
+ PDSS AYS TS P +LWCDVQLTKD G+CFPD+K+ NASNI ++ ++ +Y
Sbjct: 61 LLPDSSLDAYSFVSQTSVPGAVLWCDVQLTKDAIGLCFPDVKMMNASNIQDVYPKRKTSY 120
Query: 163 LVNGVPTPGWFSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKPPGLWL 222
L+NGVPT WF+ID+ DL+ +IL QG+ SR+ FDGN + I TV+D++ Q+KP G WL
Sbjct: 121 LLNGVPTQDWFTIDFNFKDLTKVILKQGILSRSAAFDGNSYGISTVKDISTQLKPEGFWL 180
Query: 223 NIQHDAFYAQHNLSMRSFVLSVSRSVVVNYISSPEVNFLRSIAARFRPSMTKLVFRFLGK 282
N+QHDAFYAQHNLSM SF+LS+S++V+++Y+SSPEVNF R+I RF + K VFRFL K
Sbjct: 181 NVQHDAFYAQHNLSMSSFLLSISKTVIIDYLSSPEVNFFRNIGRRFGRNGPKFVFRFLEK 240
Query: 283 SEIEPTTNQTYGSLLKNLTFIKTFASGILVPKDYIWPVDESLYLLPHTTIVLDAHKERLE 342
++E +TNQTYGSL NLTF+KTFASG+LVPK YIWP+ ES YLLP T+ V DAHK LE
Sbjct: 241 DDVEVSTNQTYGSLAGNLTFLKTFASGVLVPKSYIWPI-ESQYLLPRTSFVQDAHKAGLE 299
Query: 343 VFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPSAAVDCFAHLGKNA 402
V+AS F ND +++NYS+DPL EYLSF+DNGDFSVDG+LSDFPLT S+AVDCF+HLG NA
Sbjct: 300 VYASGFGNDFDLAYNYSFDPLAEYLSFMDNGDFSVDGLLSDFPLTASSAVDCFSHLGSNA 359
Query: 403 SKSANLLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINS 462
S + LVISKNGASGDYP CT+LAY KAI DG D IDC +QMS DG+PFCLS INL S
Sbjct: 360 SSQVDFLVISKNGASGDYPGCTDLAYTKAIKDGADVIDCSLQMSSDGIPFCLSSINLGES 419
Query: 463 TNAAQSKFNSITTTIPEIMAGSGIFSFSLIWDEIQTLIPQISNPYFK-FKLFRNPKNKNA 521
TN QS F + +TT+PEI + GI+SFSL W EIQTL P I NPY + F +FRNP+ +++
Sbjct: 420 TNVVQSPFRNRSTTVPEIGSLPGIYSFSLAWSEIQTLRPAIENPYSREFTMFRNPRERSS 479
Query: 522 GKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEALGNAGY-NKQTAL 580
GKF+ LSDFL +AKN++SL+GVLIS+ENA YL EKQG+ +V++ L AGY NK T
Sbjct: 480 GKFVSLSDFLNLAKNSSSLTGVLISVENATYLREKQGLDAVKAVLDTLTEAGYSNKTTTT 539
Query: 581 KVMIQSTDSSVLMKLREKTSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLN 640
+VMIQST+SSVL+ ++++ YE VYKV+E IRD L+ IEDIKKFAD+VV+SK+SV+P +
Sbjct: 540 RVMIQSTNSSVLIDFKKQSRYETVYKVEETIRDILDTAIEDIKKFADAVVISKKSVFPTS 599
Query: 641 SAFITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITE 700
+F T T +V+RLQ F+LPVYVE F NEFVSQ WDFF+D TVEIN++ GAGI+G ITE
Sbjct: 600 ESFTTGQTKLVERLQKFQLPVYVEVFRNEFVSQPWDFFADATVEINSHVTGAGINGTITE 659
Query: 701 FPMTAARYR--SKLVRK 715
FP+TAARY+ S L RK
Sbjct: 660 FPLTAARYKRNSCLTRK 676
|
Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 1 EC: . EC: 4 EC: . EC: 4 EC: 6 |
| >sp|Q7Y208|GLPQ3_ARATH Probable glycerophosphoryl diester phosphodiesterase 3 OS=Arabidopsis thaliana GN=GPDL3 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 829 bits (2141), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/660 (59%), Positives = 508/660 (76%), Gaps = 9/660 (1%)
Query: 57 LLVSALVVLHCGVI------AQVSAQGSNATSRWQTLTGDPPFVVARGGFSGIFPDSSSI 110
L++ + +L CGV+ AQ+ AQ S TSRWQTL GD P V+ARGGFSG++PDSS
Sbjct: 11 LVIRSSTLLFCGVVLIHLFAAQIDAQRS--TSRWQTLNGDAPLVIARGGFSGLYPDSSIA 68
Query: 111 AYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTP 170
AY L +TS V+LWCD+QLTKD GICFPDL L NAS I +++ ++K+Y VNGV T
Sbjct: 69 AYQLATLTSVADVVLWCDLQLTKDGLGICFPDLNLANASTIDRVYPNREKSYSVNGVTTK 128
Query: 171 GWFSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKPPGLWLNIQHDAFY 230
GWF D++L +L N +L +G+ SRTD+FDGNG+ I T++D+ + G WLN+QHDAFY
Sbjct: 129 GWFPNDFSLTELQNFLLIRGILSRTDRFDGNGYLISTIEDVVTTLNREGFWLNVQHDAFY 188
Query: 231 AQHNLSMRSFVLSVSRSVVVNYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTN 290
Q NLSM SF+LSVSR+V +++ISSPEVNF + I F + VF+FLGK + EPTTN
Sbjct: 189 EQQNLSMSSFLLSVSRTVSIDFISSPEVNFFKKITGSFGRNGPTFVFQFLGKEDFEPTTN 248
Query: 291 QTYGSLLKNLTFIKTFASGILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFAN 350
+TYGS+L NLTF+KTFASGILVPK YI P+D+ YL+PHT++V DAHK L+V+ S FAN
Sbjct: 249 RTYGSILSNLTFVKTFASGILVPKSYILPLDDEQYLVPHTSLVQDAHKAGLQVYVSGFAN 308
Query: 351 DIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPSAAVDCFAHLGKNASKSANLLV 410
D+ I++NYS DP++EYLSF+DNGDFSVDGVLSDFP+T SAAVDCF+H+G+NA+K + LV
Sbjct: 309 DVDIAYNYSSDPVSEYLSFVDNGDFSVDGVLSDFPITASAAVDCFSHIGRNATKQVDFLV 368
Query: 411 ISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKF 470
ISK+GASGDYP CT+LAY+KAI DG D IDC VQMS DGVPFCL I+L NS A Q+ F
Sbjct: 369 ISKDGASGDYPGCTDLAYEKAIKDGADVIDCSVQMSSDGVPFCLRSIDLRNSIAALQNTF 428
Query: 471 NSITTTIPEIMAGSGIFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDF 530
++ +T++PEI + GIF+FSL W EIQ+L P ISNP+ +++FRNP+ KN+GK + LS F
Sbjct: 429 SNRSTSVPEISSVPGIFTFSLTWPEIQSLTPAISNPFRVYRIFRNPREKNSGKLISLSQF 488
Query: 531 LEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEALGNAGY-NKQTALKVMIQSTDS 589
L++AK SLSGVLIS+ENA YL EKQG+ V +V++ L AGY N T KVMIQST+S
Sbjct: 489 LDLAKTYTSLSGVLISVENAAYLREKQGLDVVQAVLDTLTEAGYSNGTTTTKVMIQSTNS 548
Query: 590 SVLMKLREKTSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNSAFITSATD 649
SVL+ ++++ YE VYK++E I + + IEDIKKFA++VV++K+SV+P + +F+T T+
Sbjct: 549 SVLVDFKKQSKYETVYKIEETIGNIRDSAIEDIKKFANAVVINKDSVFPNSDSFLTGQTN 608
Query: 650 IVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPMTAARYR 709
+V+RLQ +LPVYVE F NEFVSQA+DFFSD TVEIN Y GAGI+G ITEFP TAARY+
Sbjct: 609 VVERLQKSQLPVYVELFRNEFVSQAYDFFSDATVEINAYIYGAGINGTITEFPFTAARYK 668
|
Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 1 EC: . EC: 4 EC: . EC: 4 EC: 6 |
| >sp|P96236|GLPQ1_MYCTU Probable glycerophosphoryl diester phosphodiesterase 1 OS=Mycobacterium tuberculosis GN=glpQ1 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 47.8 bits (112), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 92 PFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNI 151
PFVVA G S P+ + AY L L A V CDV+LT+D +C D +LD S
Sbjct: 12 PFVVAHRGASAARPEHTLAAYDLALKEGADGVE--CDVRLTRDGHLVCVHDRRLDRTSTG 69
Query: 152 AQIFKT 157
A + T
Sbjct: 70 AGLVST 75
|
Glycerophosphoryl diester phosphodiesterase hydrolyzes deacylated phospholipids to G3P and the corresponding alcohols. Mycobacterium tuberculosis (taxid: 1773) EC: 3 EC: . EC: 1 EC: . EC: 4 EC: . EC: 4 EC: 6 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 733 | ||||||
| 255576268 | 768 | glycerophosphoryl diester phosphodiester | 0.908 | 0.867 | 0.669 | 0.0 | |
| 225460805 | 757 | PREDICTED: probable glycerophosphoryl di | 0.879 | 0.852 | 0.672 | 0.0 | |
| 356552745 | 754 | PREDICTED: probable glycerophosphoryl di | 0.856 | 0.832 | 0.674 | 0.0 | |
| 83281191 | 752 | putative glycerophosphoryl diester phosp | 0.892 | 0.869 | 0.642 | 0.0 | |
| 356501592 | 753 | PREDICTED: probable glycerophosphoryl di | 0.863 | 0.840 | 0.661 | 0.0 | |
| 356524319 | 761 | PREDICTED: probable glycerophosphoryl di | 0.885 | 0.852 | 0.648 | 0.0 | |
| 147811111 | 642 | hypothetical protein VITISV_027762 [Viti | 0.848 | 0.968 | 0.669 | 0.0 | |
| 4455192 | 770 | putative protein [Arabidopsis thaliana] | 0.908 | 0.864 | 0.606 | 0.0 | |
| 224061111 | 678 | predicted protein [Populus trichocarpa] | 0.854 | 0.923 | 0.651 | 0.0 | |
| 18416801 | 759 | putative glycerophosphoryl diester phosp | 0.901 | 0.870 | 0.609 | 0.0 |
| >gi|255576268|ref|XP_002529027.1| glycerophosphoryl diester phosphodiesterase, putative [Ricinus communis] gi|223531507|gb|EEF33338.1| glycerophosphoryl diester phosphodiesterase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 942 bits (2435), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 449/671 (66%), Positives = 551/671 (82%), Gaps = 5/671 (0%)
Query: 58 LVSALVVLHCGVIAQVSAQGSNATSRWQTLTGDPPFVVARGGFSGIFPDSSSIAYSLTLI 117
+V+A V+L+ + + VSAQGS + W+TL+G+PP V+ARGGFSGIFPDSSS AY L LI
Sbjct: 20 VVAAFVLLNS-LASLVSAQGSGTS--WKTLSGNPPLVIARGGFSGIFPDSSSAAYQLALI 76
Query: 118 TSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPGWFSIDY 177
T P +ILWCDVQLTKD GIC PDL+LDN+++I+ +FK + KNYLVNG PT GWFS+D+
Sbjct: 77 TGVPDLILWCDVQLTKDGVGICAPDLRLDNSTDISLVFKNKDKNYLVNGAPTQGWFSVDF 136
Query: 178 TLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKPPGLWLNIQHDAFYAQHNLSM 237
T NDLS+++L QGVYSR++KFDGN F I TV+++ +KPP +WLNIQHDAF+ QHNLSM
Sbjct: 137 TFNDLSSVVLTQGVYSRSNKFDGNLFPIQTVENVT-GLKPPSIWLNIQHDAFFTQHNLSM 195
Query: 238 RSFVLSVSRSVVVNYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLL 297
RS+VLS+S+ VV+NYISSPE+ FLR IA+RF P +TKLVFRFLG +EIEP+TNQTY +L
Sbjct: 196 RSYVLSLSKKVVINYISSPEMAFLRGIASRFNPKVTKLVFRFLGPNEIEPSTNQTYSALS 255
Query: 298 KNLTFIKTFASGILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFN 357
KNLTFIKTFASGIL+PK YIWPVD SLYL PHT++V DAHK LEVFAS F ND+P SFN
Sbjct: 256 KNLTFIKTFASGILIPKGYIWPVDASLYLQPHTSVVSDAHKAGLEVFASEFYNDVPFSFN 315
Query: 358 YSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPSAAVDCFAHLGKNASKSANLLVISKNGAS 417
YSYDP++EYLSF+DNGDFS+DGVLSDFP+TPS A DCF+ +G+NA+K +N+LVISKNGAS
Sbjct: 316 YSYDPISEYLSFVDNGDFSIDGVLSDFPITPSGAFDCFSQIGQNATKQSNVLVISKNGAS 375
Query: 418 GDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTI 477
GDYP CT++AYQKAISDG D IDCPVQMSKDG+PFCLS INLI+ST AQ+ + S+ I
Sbjct: 376 GDYPGCTDMAYQKAISDGADVIDCPVQMSKDGIPFCLSTINLIDSTKVAQTNYGSLAANI 435
Query: 478 PEIMAGSGIFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNA 537
PE+ GSGI++F+L W +IQTL P I+NPY +KLFRNPK +NAGKF+ LSDFL +AKN
Sbjct: 436 PELEKGSGIYTFNLTWSQIQTLTPAIANPYAIYKLFRNPKFRNAGKFLTLSDFLALAKNT 495
Query: 538 NSLSGVLISIENAVYLAEKQGMSVTNSVMEALGNAGYNKQTALKVMIQSTDSSVLMKLRE 597
+SLSGVLISIE+A YL EKQ + VT++V+ AL AGY QTA+ VMIQST+S+VLMK ++
Sbjct: 496 SSLSGVLISIEHAAYLIEKQQLPVTDAVLGALSKAGYENQTAIDVMIQSTNSAVLMKFKD 555
Query: 598 KTSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNSAFITSATDIVQRLQSF 657
K +Y+LVYKV ENIRDAL+ TIEDI+ FA+SVV++K SV+P NS F+T ATD+V +LQS
Sbjct: 556 KKNYKLVYKVDENIRDALDATIEDIRTFANSVVVNKNSVFPDNSLFLTGATDVVPKLQSA 615
Query: 658 KLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPMTAARY-RSKLVRKQ 716
LPVYVE FSNEFVSQAWDFFSD VEIN+Y GA + GVIT+FP TAARY R+K +
Sbjct: 616 GLPVYVELFSNEFVSQAWDFFSDANVEINSYVIGANVSGVITDFPKTAARYKRNKCLNMG 675
Query: 717 TSLCLYGAGIH 727
S Y A +
Sbjct: 676 NSTPAYMAPVQ 686
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225460805|ref|XP_002276757.1| PREDICTED: probable glycerophosphoryl diester phosphodiesterase 1 [Vitis vinifera] gi|297737518|emb|CBI26719.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 902 bits (2330), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 438/651 (67%), Positives = 527/651 (80%), Gaps = 6/651 (0%)
Query: 62 LVVLHCGVIAQVSAQGS-NATSRWQTLTGDPPFVVARGGFSGIFPDSSSIAYSLTLITSA 120
L +LH +A VSAQGS N TS WQTL G+ P V+ARGGFSG+FPDSSS AYSL L+TS
Sbjct: 10 LFLLHS--VALVSAQGSTNGTSSWQTLNGNAPLVIARGGFSGLFPDSSSAAYSLALMTSL 67
Query: 121 PSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPGWFSIDYTLN 180
+V+LWCDVQLTKD AGICFPD+KL+NAS+I+ +FK + YLVNGV TPGWFS+D+TL
Sbjct: 68 SNVVLWCDVQLTKDGAGICFPDMKLENASDISIVFKNRNNVYLVNGVSTPGWFSVDFTLT 127
Query: 181 DLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKPPGLWLNIQHDAFYAQHNLSMRSF 240
DL + LNQGVYSR+ +FDGN F ILTVQ+M + I+PPGLWLN+QHD FY +HNLSMR+F
Sbjct: 128 DLETVALNQGVYSRSGRFDGNLFPILTVQEMVKLIRPPGLWLNLQHDVFYTKHNLSMRNF 187
Query: 241 VLSVSRSVVVNYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNL 300
VLSVS+SV+V+YISSPEV FLR ++ RF+ + TKL+FRFL K E +P+TNQTYGSLL NL
Sbjct: 188 VLSVSKSVIVDYISSPEVAFLRGVSQRFKATKTKLIFRFLEKEETDPSTNQTYGSLLNNL 247
Query: 301 TFIKTFASGILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSY 360
TFIKTFASGILVPK YIWPV+++ YL T +V +AHKE LEVF S+F NDIP S+NYSY
Sbjct: 248 TFIKTFASGILVPKGYIWPVNKNSYLESSTLVVQNAHKEGLEVFGSDFINDIPFSYNYSY 307
Query: 361 DPLTEYLSFIDNGDFSVDGVLSDFPLTPSAAVDCFAHLGKNASKSANLLVISKNGASGDY 420
DP+ E L+FIDN FSVDGVLSDFP+TPSAA+DCFAH+GKNAS L+IS NGASGDY
Sbjct: 308 DPIAEVLNFIDNDAFSVDGVLSDFPITPSAAIDCFAHIGKNASGQEKPLIISYNGASGDY 367
Query: 421 PSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEI 480
PSCT+LAY KAISDGVD +DC VQM+KDG P CLS INL++ST AQ+ F++ TTTI E+
Sbjct: 368 PSCTDLAYTKAISDGVDVLDCNVQMTKDGTPICLSSINLMDSTKVAQTPFSTFTTTITEL 427
Query: 481 MAGSGIFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSL 540
GSGIF+F+L W++I++L P ISNPY F+L RNP K AGK + LSDFL +AK ANSL
Sbjct: 428 QKGSGIFTFNLTWEDIRSLTPAISNPYSTFRLSRNPAAKTAGKLVSLSDFLSIAKEANSL 487
Query: 541 S-GVLISIENAVYLAEKQGMSVTNSVMEALGNAGYNKQTALKVMIQSTDSSVLMKLRE-K 598
S GVLI IE+A +L K G+SVT++V++AL AGY+ T +VMIQST+SSVL + +E K
Sbjct: 488 SGGVLIGIEHAAFLV-KVGLSVTDAVLDALSKAGYDNVTTPRVMIQSTNSSVLKEFKEKK 546
Query: 599 TSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNSAFITSATDIVQRLQSFK 658
+YELVY+V ENIRDA + TIEDIKKFA SVV+SK+S+YP N AFIT ATDIV RL+
Sbjct: 547 KNYELVYRVDENIRDASDATIEDIKKFATSVVISKDSIYPENKAFITGATDIVSRLKKNN 606
Query: 659 LPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPMTAARYR 709
LPVYV+ F NEF+SQAWDFFSD TVEIN++ GAGIDGVIT FP TAA YR
Sbjct: 607 LPVYVQRFDNEFISQAWDFFSDATVEINSFVTGAGIDGVITSFPQTAASYR 657
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356552745|ref|XP_003544723.1| PREDICTED: probable glycerophosphoryl diester phosphodiesterase 3-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 886 bits (2289), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 424/629 (67%), Positives = 507/629 (80%), Gaps = 1/629 (0%)
Query: 82 SRWQTLTGDPPFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFP 141
S W TL G P VVARGGFSGI PDSS AY+L +I++ P V +WCDVQLTKD GIC P
Sbjct: 28 STWNTLGGGAPLVVARGGFSGILPDSSGAAYNLAVISTGPDVYIWCDVQLTKDGVGICQP 87
Query: 142 DLKLDNASNIAQIFKTQQKNYLVNGVPTPGWFSIDYTLNDLSNIILNQGVYSRTDKFDGN 201
D+ L N++ IA I+ + +Y VNGVPT G+F +DYTL DLS++IL QGVYSR+ FDGN
Sbjct: 88 DINLANSTYIATIYPNKTTSYSVNGVPTSGYFPLDYTLKDLSSVILTQGVYSRSTLFDGN 147
Query: 202 GFQILTVQDMAR-QIKPPGLWLNIQHDAFYAQHNLSMRSFVLSVSRSVVVNYISSPEVNF 260
GF ILTV D+ + KP G+WLNIQHDAFYAQHNLSMRSFVLSVSRSVV +YISSPEV F
Sbjct: 148 GFGILTVDDLVKLDQKPKGIWLNIQHDAFYAQHNLSMRSFVLSVSRSVVFSYISSPEVGF 207
Query: 261 LRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTFASGILVPKDYIWPV 320
LRSIA+RF P TKLVFRF+ +S+++P+TNQTYGSLLKNLTFIKTFASGILVPK YIWPV
Sbjct: 208 LRSIASRFNPKTTKLVFRFMRQSDVDPSTNQTYGSLLKNLTFIKTFASGILVPKGYIWPV 267
Query: 321 DESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGV 380
D +LYL HT++V DAHK LEVFAS+F ND+P SFNYSYDPL EYL F+DNGDFSVDGV
Sbjct: 268 DATLYLQSHTSLVSDAHKAGLEVFASDFVNDVPSSFNYSYDPLAEYLQFVDNGDFSVDGV 327
Query: 381 LSDFPLTPSAAVDCFAHLGKNASKSANLLVISKNGASGDYPSCTNLAYQKAISDGVDFID 440
LSDFP+TP A+ CFAHLG NA+K LVISK GASGDYP+CT+LAY KAISDGVD +D
Sbjct: 328 LSDFPITPFEAIGCFAHLGTNATKKDKTLVISKYGASGDYPACTDLAYNKAISDGVDVLD 387
Query: 441 CPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIFSFSLIWDEIQTLI 500
CPVQMSKDG PFCL+ I+LI ST AQS F+ TIPEI +GSGIF+F+L W++I+ L
Sbjct: 388 CPVQMSKDGTPFCLNSIDLIESTTVAQSSFSKFAMTIPEIKSGSGIFAFNLTWNDIKILT 447
Query: 501 PQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMS 560
P I NP+ K++LFRNP++KNAG + LSDFL + KN SLSGV I +ENA YLA+KQG+S
Sbjct: 448 PSILNPFAKYRLFRNPRSKNAGTLLALSDFLSLTKNQTSLSGVAIIVENAAYLADKQGLS 507
Query: 561 VTNSVMEALGNAGYNKQTALKVMIQSTDSSVLMKLREKTSYELVYKVKENIRDALNQTIE 620
V ++V+ AL AGY+K + KV IQST+SSVL+K +EKTSYELVYK+ E + DA N +E
Sbjct: 508 VIDAVIGALSKAGYDKPGSQKVYIQSTNSSVLLKFKEKTSYELVYKIDETVGDAANAAVE 567
Query: 621 DIKKFADSVVLSKESVYPLNSAFITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSD 680
DIK FA SVV++K+SV P N+ F+T+ T+IV +L++ L V+VETFSNEFVSQAWDFFSD
Sbjct: 568 DIKSFASSVVVNKDSVIPNNNKFLTAYTNIVPKLKNANLSVFVETFSNEFVSQAWDFFSD 627
Query: 681 PTVEINTYYEGAGIDGVITEFPMTAARYR 709
PTVEIN+Y EGA IDG+IT+FP TA RYR
Sbjct: 628 PTVEINSYIEGAQIDGIITDFPKTADRYR 656
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|83281191|dbj|BAE53680.1| putative glycerophosphoryl diester phosphodiesterase family protein [Nicotiana tabacum] gi|115500890|dbj|BAF34116.1| glycerophosphodiesterase-like protein [Nicotiana tabacum] | Back alignment and taxonomy information |
|---|
Score = 878 bits (2268), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 426/663 (64%), Positives = 521/663 (78%), Gaps = 9/663 (1%)
Query: 48 MCNTRALGLLLVSALVVLHCGVIAQVSAQGS-NATSRWQTLTGDPPFVVARGGFSGIFPD 106
M N R++ LL L C A VSAQ S NATS+W TLTGD P V+ARGGFSG+ PD
Sbjct: 1 MWNLRSISCLL------LLCCSAAFVSAQRSDNATSKWLTLTGDAPKVIARGGFSGLMPD 54
Query: 107 SSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNG 166
SS AY L S + WCDVQLTKD GIC D++LDN+S++ +FK +Q YLVNG
Sbjct: 55 SSFNAYILAKAISVADWVAWCDVQLTKDGVGICLSDIRLDNSSDVNVLFKNKQNTYLVNG 114
Query: 167 VPTPGWFSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKPPGLWLNIQH 226
VP GWFS+D+ DL+ + L QGV+SR+ +FDG QILTVQD+A Q+KPPGLWLNIQH
Sbjct: 115 VPQKGWFSVDFNFKDLALVSLKQGVFSRSPRFDGTPQQILTVQDVASQVKPPGLWLNIQH 174
Query: 227 DAFYAQHNLSMRSFVLSVSRSVVVNYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIE 286
D+FY+Q NLS+RSFV+S+SRSV+VNYISSPEVNFLRSIA RF P +TK VFRFLG+ IE
Sbjct: 175 DSFYSQRNLSIRSFVVSLSRSVIVNYISSPEVNFLRSIARRFNPRVTKFVFRFLGEDGIE 234
Query: 287 PTTNQTYGSLLKNLTFIKTFASGILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFAS 346
P+TNQTYGSLLKNLTF+KTFASGILVPK YIWPVD SLYL PHT++VLDAHKE LE+FA+
Sbjct: 235 PSTNQTYGSLLKNLTFVKTFASGILVPKHYIWPVDNSLYLQPHTSVVLDAHKEGLEIFAA 294
Query: 347 NFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPSAAVDCFAHLGKNASKSA 406
+FAND+P ++NYSYDP+ EYLS+IDNGDFSVDGVLSDFPLTPS++VDCF+HLGKN
Sbjct: 295 DFANDVPSAYNYSYDPVAEYLSYIDNGDFSVDGVLSDFPLTPSSSVDCFSHLGKNDKPQV 354
Query: 407 NLLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAA 466
L +I+ GASGDYP CT+LAY KA SDG D + CPVQM+KD VPFCL INLI+ T AA
Sbjct: 355 KLQIITSEGASGDYPGCTDLAYTKAASDGADVLGCPVQMTKDRVPFCLGSINLIDKTTAA 414
Query: 467 QSKFNSITTTIPEIMAGSGIFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMK 526
QS F++I TT+PE+ +GI + +L W EIQ+L P ISN + +F+LFRNPK +N G FM
Sbjct: 415 QSPFSNIATTVPELKITNGILTINLTWTEIQSLKPAISNRWSEFRLFRNPKARNDGNFMS 474
Query: 527 LSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEALGNAGYNKQTALKVMIQS 586
L+DFL AKNA S+SGV+IS+ENA Y+A KQG+ VT +V++AL AGYN QTA KV+IQS
Sbjct: 475 LADFLTFAKNATSVSGVMISVENAAYMA-KQGLGVTGAVLDALSKAGYNNQTAKKVLIQS 533
Query: 587 TDSSVLMKLREKTSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNSAFITS 646
TDSSVL + + K+SYELVY V ++IRD + TI +IK FA SV+++K+SV+P AFI +
Sbjct: 534 TDSSVLEEFK-KSSYELVYGVGDDIRDIESSTILEIKTFAKSVIITKQSVFPSEDAFIIA 592
Query: 647 ATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPMTAA 706
T++VQ+LQS L VYV+ +NEFVSQ+WDFFSD +VE+N Y GAGIDGVITE+P TAA
Sbjct: 593 QTNVVQKLQSSNLTVYVQLLNNEFVSQSWDFFSDSSVELNNYAVGAGIDGVITEYPATAA 652
Query: 707 RYR 709
RYR
Sbjct: 653 RYR 655
|
Source: Nicotiana tabacum Species: Nicotiana tabacum Genus: Nicotiana Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356501592|ref|XP_003519608.1| PREDICTED: probable glycerophosphoryl diester phosphodiesterase 3-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 875 bits (2261), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 422/638 (66%), Positives = 510/638 (79%), Gaps = 5/638 (0%)
Query: 73 VSAQGSNATSRWQTLTGDPPFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLT 132
+SAQ S W TL+G P VVARGGFSG+ PDSS +Y+L +ITS P V +WCDVQLT
Sbjct: 23 ISAQ----RSTWNTLSGGAPLVVARGGFSGMLPDSSDASYNLAVITSGPDVYIWCDVQLT 78
Query: 133 KDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPGWFSIDYTLNDLSNIILNQGVY 192
KD GIC PD+ L N++ IA + + +YLVNGVPT G+F +DYTL DLS+++L QGVY
Sbjct: 79 KDGLGICQPDINLANSTYIASAYPNKTTSYLVNGVPTRGYFPLDYTLKDLSSVVLTQGVY 138
Query: 193 SRTDKFDGNGFQILTVQDMAR-QIKPPGLWLNIQHDAFYAQHNLSMRSFVLSVSRSVVVN 251
SR++ FDGN F ILTV+D+A+ + KP G WLNIQHDAFYAQHNLSMRSFVLSVSR VV +
Sbjct: 139 SRSNLFDGNNFGILTVEDLAKLRQKPKGKWLNIQHDAFYAQHNLSMRSFVLSVSRKVVFS 198
Query: 252 YISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTFASGIL 311
YISSPEV FLRSIA+RF P TKLVFRF+G S+++P+TN+TYGSLL+NLTFIKTFASGIL
Sbjct: 199 YISSPEVGFLRSIASRFNPKTTKLVFRFMGLSDVDPSTNRTYGSLLQNLTFIKTFASGIL 258
Query: 312 VPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFID 371
VPK YIWPVD +LYL HT++V DAHK LEVFAS+F ND+P SFNYSYDPL EYL F+D
Sbjct: 259 VPKGYIWPVDATLYLQSHTSLVSDAHKAGLEVFASDFVNDVPFSFNYSYDPLAEYLQFVD 318
Query: 372 NGDFSVDGVLSDFPLTPSAAVDCFAHLGKNASKSANLLVISKNGASGDYPSCTNLAYQKA 431
NGDFSVDGVLSDFP+TP A+ CFAHLG NA+K LVISK GASGDYP+CT+LAY KA
Sbjct: 319 NGDFSVDGVLSDFPITPFEAIGCFAHLGTNATKKDKTLVISKYGASGDYPACTDLAYNKA 378
Query: 432 ISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIFSFSL 491
ISDGVD +DCPVQMSKDG PFCL+ I+LI ST AQS F+ TIPEI +G GIF+F+L
Sbjct: 379 ISDGVDVLDCPVQMSKDGTPFCLNSIDLIESTTVAQSSFSKFAMTIPEIKSGIGIFAFNL 438
Query: 492 IWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAV 551
W++I++L P I NP+ K++LFRNP++KNAG + LSDFL + KN SLSGV I +ENA
Sbjct: 439 TWNDIKSLTPSILNPFAKYRLFRNPRSKNAGTLLALSDFLSLTKNQTSLSGVAIIVENAA 498
Query: 552 YLAEKQGMSVTNSVMEALGNAGYNKQTALKVMIQSTDSSVLMKLREKTSYELVYKVKENI 611
YLA+KQG+SV ++V+ AL AGY+K + KV IQST+SSVL+K +EKTSYELVYK+ E I
Sbjct: 499 YLADKQGLSVIDAVIGALSKAGYDKPGSQKVYIQSTNSSVLLKFKEKTSYELVYKIDETI 558
Query: 612 RDALNQTIEDIKKFADSVVLSKESVYPLNSAFITSATDIVQRLQSFKLPVYVETFSNEFV 671
DA N +EDIK FA SVV++K+S+ P N F+T+ T+IV +L++ L V+VETFSNEFV
Sbjct: 559 GDAANAAVEDIKSFASSVVVNKDSIIPNNDQFLTAYTNIVPKLKNASLSVFVETFSNEFV 618
Query: 672 SQAWDFFSDPTVEINTYYEGAGIDGVITEFPMTAARYR 709
SQAWDFFSD TVEINTY GA IDG+IT+FP TA RYR
Sbjct: 619 SQAWDFFSDATVEINTYITGAQIDGIITDFPKTADRYR 656
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356524319|ref|XP_003530777.1| PREDICTED: probable glycerophosphoryl diester phosphodiesterase 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 868 bits (2242), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 423/652 (64%), Positives = 511/652 (78%), Gaps = 3/652 (0%)
Query: 60 SALVVLHCGVIAQVSAQGSNATSRWQTLTGDPPFVVARGGFSGIFPDSSSIAYSLTLITS 119
S L +L V+ VSAQGSN T+ W TLTG PP V+ARGGFSGIFPDSS AY+L +TS
Sbjct: 12 SLLHLLFHSVLVLVSAQGSNRTT-WNTLTGSPPLVIARGGFSGIFPDSSEFAYNLAAVTS 70
Query: 120 APSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPGWFSIDYTL 179
++I+WCDVQLTKD GIC P++KL+NA+NI +F+ + K Y VNGV T +F++D+T
Sbjct: 71 LKNLIVWCDVQLTKDGEGICIPNIKLENATNIDNVFQNRSKTYSVNGVQTSAYFAVDFTF 130
Query: 180 NDL-SNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKPPGLWLNIQHDAFYAQHNLSMR 238
+L S + L QG ++R+DKFD N FQILTV D+ + PPGLWLNIQHDAFY QHNLSM+
Sbjct: 131 EELYSKVFLVQGDFTRSDKFDNNLFQILTVNDLVKNEAPPGLWLNIQHDAFYEQHNLSMK 190
Query: 239 SFVLSVSRSVVVNYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLK 298
+FVLSVSR+V VNYISSPE FLR+I AR P +TKLVFRFL K E++P+TNQTYGSLLK
Sbjct: 191 NFVLSVSRTVNVNYISSPEAGFLRTIRARINPRITKLVFRFLEKDEVDPSTNQTYGSLLK 250
Query: 299 NLTFIKTFASGILVPKDYIWPVD-ESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFN 357
NL IKTFASGILVPK YIWP+D SLYLLPHT++V DAHK LEVFAS+F ND+PIS+N
Sbjct: 251 NLASIKTFASGILVPKGYIWPIDPSSLYLLPHTSLVSDAHKVGLEVFASDFLNDVPISYN 310
Query: 358 YSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPSAAVDCFAHLGKNASKSANLLVISKNGAS 417
YSYDP+ EYL+FIDNG+FSVDGVLSDFPLTPS A+DCFAH+G NA+K N LVISK GAS
Sbjct: 311 YSYDPVAEYLNFIDNGNFSVDGVLSDFPLTPSEAIDCFAHVGLNATKKVNTLVISKYGAS 370
Query: 418 GDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTI 477
GDYP CT+LAY+KAISDGVD +DCPVQMSK G+PFCLS I+LI STN AQS F+ + I
Sbjct: 371 GDYPPCTDLAYEKAISDGVDVLDCPVQMSKGGIPFCLSSIDLIESTNVAQSNFSKLGKII 430
Query: 478 PEIMAGSGIFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNA 537
PEI +G+GIF+F L WD+I+TL P + NPY L+RNPK G F+ LSDFL + K
Sbjct: 431 PEIKSGNGIFTFDLAWDDIKTLTPSMLNPYSINSLYRNPKYNKKGHFLTLSDFLNLPKGQ 490
Query: 538 NSLSGVLISIENAVYLAEKQGMSVTNSVMEALGNAGYNKQTALKVMIQSTDSSVLMKLRE 597
SL GV+I+IENA YLA KQ +SVT +V++ L AGY+K A KVMIQST+SSVL+K +E
Sbjct: 491 TSLLGVVITIENAAYLARKQNLSVTEAVIDTLSKAGYDKPGAPKVMIQSTNSSVLLKFKE 550
Query: 598 KTSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNSAFITSATDIVQRLQSF 657
KT YELVYK+ E + DA++ I DIK+FA SVV+ K SVYP++ F+T +T IV + +S
Sbjct: 551 KTKYELVYKIDEIVGDAVDSAILDIKRFAHSVVVKKASVYPVSKFFVTGSTKIVPKFKSS 610
Query: 658 KLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPMTAARYR 709
L VYVETF NEFVSQAWDF SD TVEINT+ + A IDGVIT+FP TA RYR
Sbjct: 611 NLSVYVETFRNEFVSQAWDFMSDATVEINTFVQDAEIDGVITDFPKTANRYR 662
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147811111|emb|CAN61355.1| hypothetical protein VITISV_027762 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 867 bits (2239), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 419/626 (66%), Positives = 508/626 (81%), Gaps = 4/626 (0%)
Query: 70 IAQVSAQGS-NATSRWQTLTGDPPFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCD 128
+A VSAQGS N TS WQTL G+ P V+ARGGFSG+FPDSSS AYSL L+TS +V+LWCD
Sbjct: 16 VALVSAQGSTNGTSSWQTLNGNAPLVIARGGFSGLFPDSSSAAYSLALMTSLSNVVLWCD 75
Query: 129 VQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPGWFSIDYTLNDLSNIILN 188
VQL+KD AGICFPD+KL+NAS+I+ +FK + YLVNGV TPGWFS+D+TL DL + LN
Sbjct: 76 VQLSKDGAGICFPDMKLENASDISIVFKNRNNVYLVNGVSTPGWFSVDFTLTDLETVALN 135
Query: 189 QGVYSRTDKFDGNGFQILTVQDMARQIKPPGLWLNIQHDAFYAQHNLSMRSFVLSVSRSV 248
QGVYSR+ KFDGN F ILTVQ+M + +PPGLWLN+QHD FY +HNLSMR+FVLSVS+SV
Sbjct: 136 QGVYSRSGKFDGNLFPILTVQEMVKLTRPPGLWLNLQHDVFYTKHNLSMRNFVLSVSKSV 195
Query: 249 VVNYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTFAS 308
+V+YISSPEV FLR ++ RF+ + TKL+FRFL K E +P+TNQTYGSLL NLTFIKTFAS
Sbjct: 196 IVDYISSPEVAFLRGVSQRFKATKTKLIFRFLEKEETDPSTNQTYGSLLNNLTFIKTFAS 255
Query: 309 GILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLS 368
GILVPK YIWPV+++ YL T +V +AHKE LEVF S+F NDIP S+NYSYDP+ E L+
Sbjct: 256 GILVPKGYIWPVNKNSYLESSTLVVQNAHKEGLEVFGSDFINDIPFSYNYSYDPIAEVLN 315
Query: 369 FIDNGDFSVDGVLSDFPLTPSAAVDCFAHLGKNASKSANLLVISKNGASGDYPSCTNLAY 428
FIDN FSVDGVLSDFP+TPSAA+DCFAH+GKNAS L+IS NGASGDYPSCT+LAY
Sbjct: 316 FIDNDAFSVDGVLSDFPITPSAAIDCFAHIGKNASGQEKPLIISYNGASGDYPSCTDLAY 375
Query: 429 QKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIFS 488
KAISDGVD +DC VQM+KDG P CLS INL++ST AQ+ F++ TTTI E+ GSGIF+
Sbjct: 376 TKAISDGVDVLDCNVQMTKDGTPICLSSINLMDSTKVAQTPFSTFTTTITELQKGSGIFT 435
Query: 489 FSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLS-GVLISI 547
F+L W++I++L P ISNPY F+L RNP K AGK + LSDFL +AK ANSLS GVLI I
Sbjct: 436 FNLTWEDIRSLTPAISNPYSTFRLSRNPAAKTAGKLVSLSDFLSIAKEANSLSGGVLIGI 495
Query: 548 ENAVYLAEKQGMSVTNSVMEALGNAGYNKQTALKVMIQSTDSSVLMKLRE-KTSYELVYK 606
E+A +L K G+SVT++V++AL AGY+ T +VMIQST+SSVL + +E K +YELVY+
Sbjct: 496 EHAAFLV-KVGLSVTDAVLDALSKAGYDNVTTPRVMIQSTNSSVLKEFKEKKKNYELVYR 554
Query: 607 VKENIRDALNQTIEDIKKFADSVVLSKESVYPLNSAFITSATDIVQRLQSFKLPVYVETF 666
V ENIRDA + TIEDIKKFA SVV+SK+S+YP N AFIT ATDIV RL+ LPVYV+ F
Sbjct: 555 VDENIRDASDATIEDIKKFATSVVISKDSIYPENKAFITGATDIVSRLKKNNLPVYVQRF 614
Query: 667 SNEFVSQAWDFFSDPTVEINTYYEGA 692
NEF+SQAWDFFSD TVEIN++ G+
Sbjct: 615 DNEFISQAWDFFSDATVEINSFVHGS 640
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|4455192|emb|CAB36515.1| putative protein [Arabidopsis thaliana] gi|7269521|emb|CAB79524.1| putative protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 864 bits (2233), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 410/676 (60%), Positives = 523/676 (77%), Gaps = 10/676 (1%)
Query: 50 NTRALGLLLVSALVVLHCGVI------AQVSAQGSNATSRWQTLTGDPPFVVARGGFSGI 103
N GLL S+L L CGVI AQ+ AQ S W TLTGDPP V+ARGGFSG+
Sbjct: 9 NPTMRGLLRASSL--LLCGVILIQLLAAQIHAQSKKPKSPWPTLTGDPPLVIARGGFSGL 66
Query: 104 FPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYL 163
FPDSS AY+ ++TS P +LWCDVQLTKD GICFPDL + N+S+I ++ T+QK+Y
Sbjct: 67 FPDSSYDAYNFAILTSVPDAVLWCDVQLTKDALGICFPDLTMRNSSSIEAVYPTRQKSYP 126
Query: 164 VNGVPTPGWFSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKPPGLWLN 223
VNGVPT GWF+ID++L DL ++ L +G+ SR++KFDGN I+TVQ ++ Q+KP WLN
Sbjct: 127 VNGVPTSGWFTIDFSLKDLKDVNLIRGILSRSEKFDGNSNPIMTVQSVSTQMKPSFFWLN 186
Query: 224 IQHDAFYAQHNLSMRSFVLSVSRSVVVNYISSPEVNFLRSIAARFRPSMTKLVFRFLGKS 283
+QHDAFYAQHNLSM SF+++ S++V++++ISSPEVNF + IA RF + LVFRFLG+
Sbjct: 187 VQHDAFYAQHNLSMSSFLVAASKTVLIDFISSPEVNFFKKIAGRFGRNGPSLVFRFLGQD 246
Query: 284 EIEPTTNQTYGSLLKNLTFIKTFASGILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEV 343
E EPTTN+TYGS+L NLTF+KTFASGILVPK YI P+D+ YLLPHT++V DAHK LEV
Sbjct: 247 EFEPTTNRTYGSILSNLTFVKTFASGILVPKSYILPLDDQQYLLPHTSLVQDAHKAGLEV 306
Query: 344 FASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPSAAVDCFAHLGKNAS 403
F S FANDI I+ +YS+DP++EYLSF+DNG+FSVDGVLSDFP+T SA++DCF+H+G+NA+
Sbjct: 307 FVSGFANDIDIAHDYSFDPVSEYLSFVDNGNFSVDGVLSDFPITASASLDCFSHVGRNAT 366
Query: 404 KSANLLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINST 463
K + LVI+K+GASGDYP CT+LAY+KAI DG D IDC VQ+S DG PFCLS I+L NST
Sbjct: 367 KQVDFLVITKDGASGDYPGCTDLAYKKAIKDGADVIDCSVQLSSDGTPFCLSSIDLGNST 426
Query: 464 NAAQSKFNSITTTIPEIMAGSGIFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGK 523
+ + F + +TT+PE+ + I++FSL W EIQTL P ISNPY LFRNPK KNAGK
Sbjct: 427 TVSLTAFRNRSTTVPELGSLGAIYTFSLTWAEIQTLTPAISNPYRVTSLFRNPKQKNAGK 486
Query: 524 FMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEALGNAGYNKQTALKVM 583
LSDFL +AKN+ SLSGVLIS+ENA YL E+QG+ V +V++ L GY+ TA KVM
Sbjct: 487 LFSLSDFLSLAKNSTSLSGVLISVENAAYLREEQGLDVVKAVLDTLTQTGYSNSTATKVM 546
Query: 584 IQSTDSSVLMKLREKTSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNSAF 643
IQST+SSVL+ ++++ YE VYKV+ENIRD L+ IEDIKKFAD+VV+ K SV+P+ +F
Sbjct: 547 IQSTNSSVLVDFKKQSQYETVYKVEENIRDILDSAIEDIKKFADAVVIQKLSVFPVAQSF 606
Query: 644 ITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPM 703
IT+ T++V++LQ +LPVYVE F NEF+SQ +DFF+D TVEIN+Y GAGI+G ITEFP
Sbjct: 607 ITTQTNVVEKLQKSQLPVYVELFQNEFLSQPYDFFADATVEINSYITGAGINGTITEFPF 666
Query: 704 TAARYRSKLV--RKQT 717
TAARY+ L RK+T
Sbjct: 667 TAARYKRNLCLGRKET 682
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224061111|ref|XP_002300351.1| predicted protein [Populus trichocarpa] gi|222847609|gb|EEE85156.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 863 bits (2229), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 410/629 (65%), Positives = 515/629 (81%), Gaps = 3/629 (0%)
Query: 89 GDPPFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNA 148
G+PP V+ARGGFSG+FPDSSS A+ +TS P V+LWCDVQLTKD GIC PDL+LDN+
Sbjct: 2 GNPPLVIARGGFSGLFPDSSSDAFQFATLTSLPGVVLWCDVQLTKDSVGICAPDLRLDNS 61
Query: 149 SNIAQIFKTQQKNYLVNGVPTPGWFSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTV 208
++IAQ+ + + K YLVNG+PT GWF++D+TLN+LS + L QG+YSR+++FD + I TV
Sbjct: 62 TSIAQVMQNKDKLYLVNGIPTRGWFTVDFTLNELSLVSLTQGIYSRSERFD-YIYPIQTV 120
Query: 209 QDMARQIKPPGLWLNIQHDAFYAQHNLSMRSFVLSVSRSVVVNYISSPEVNFLRSIAARF 268
+D+A +KPPGLWLNIQ+DAF+ QHNLSMRS+VLS+SR VV+N++SSPEV FLR I RF
Sbjct: 121 EDVA-NLKPPGLWLNIQYDAFFKQHNLSMRSYVLSLSRRVVINHLSSPEVGFLRGIVKRF 179
Query: 269 RPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTFASGILVPKDYIWPVDESLYLLP 328
++TKLVFRFL + IEP+TN+TYGSL KN TFIKTFASGIL+PK YIWP+D S YL P
Sbjct: 180 NLNITKLVFRFLESNVIEPSTNETYGSLSKNFTFIKTFASGILIPKSYIWPLDASNYLQP 239
Query: 329 HTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTP 388
HT+IV DAHK LEVF S F ND+P+S+NYSYDP+TEYL F+DNG+FSVDGVLSDFP+TP
Sbjct: 240 HTSIVSDAHKAGLEVFVSEFYNDVPLSYNYSYDPVTEYLRFVDNGEFSVDGVLSDFPVTP 299
Query: 389 SAAVDCFAHLGKNASKSANLLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKD 448
SA +DCF+ LGKNA+ NL VISKNGASGDYP CT+LAYQKAI DG D IDCPVQ+SKD
Sbjct: 300 SATIDCFSGLGKNATPQVNLSVISKNGASGDYPGCTDLAYQKAILDGADVIDCPVQISKD 359
Query: 449 GVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIFSFSLIWDEIQTLIPQISNPYF 508
G+PFCL INL +ST AQS +++ IP+I AGSGIF+FSL W EIQ L P ISNPY
Sbjct: 360 GIPFCLGSINLYDSTTVAQSIYSNREQNIPQIKAGSGIFTFSLTWSEIQNLTPVISNPYS 419
Query: 509 KFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEA 568
K++L RNPK KN+GKF+ LSDFL +AKN +SLSGVLISIENA YL EK+G+ +T+ V+E
Sbjct: 420 KYELLRNPKFKNSGKFLTLSDFLALAKNTSSLSGVLISIENAAYLIEKEGLPITDKVLEV 479
Query: 569 LGNAGYNKQTALKVMIQSTDSSVLMKLREKTSYELVYKVKENIRDALNQTIEDIKKFADS 628
L AGY+ T+ KVMI+ST+SSVLMK R++++YELVY+++E+I+DA + ++DIK FA+S
Sbjct: 480 LSLAGYDDPTSKKVMIESTNSSVLMKFRDESNYELVYRIEEDIQDAQDAALKDIKDFANS 539
Query: 629 VVLSKESVYPLNSAFITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTY 688
VV+SK SV+P +S+F++ T++V +LQS L VYVETFSNEFVSQAWDFFSD TVEIN+Y
Sbjct: 540 VVISKASVFPESSSFLSGVTNVVPKLQSHGLSVYVETFSNEFVSQAWDFFSDSTVEINSY 599
Query: 689 YEGAGIDGVITEFPMTAARY-RSKLVRKQ 716
G I GVITEFP+T+ARY R++ + K+
Sbjct: 600 VMGVNISGVITEFPLTSARYKRNRCLGKE 628
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18416801|ref|NP_567755.1| putative glycerophosphoryl diester phosphodiesterase 2 [Arabidopsis thaliana] gi|332278205|sp|Q9SZ11.3|GLPQ2_ARATH RecName: Full=Probable glycerophosphoryl diester phosphodiesterase 2; Flags: Precursor gi|332659838|gb|AEE85238.1| putative glycerophosphoryl diester phosphodiesterase 2 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 863 bits (2229), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 409/671 (60%), Positives = 522/671 (77%), Gaps = 10/671 (1%)
Query: 55 GLLLVSALVVLHCGVI------AQVSAQGSNATSRWQTLTGDPPFVVARGGFSGIFPDSS 108
GLL S+L L CGVI AQ+ AQ S W TLTGDPP V+ARGGFSG+FPDSS
Sbjct: 3 GLLRASSL--LLCGVILIQLLAAQIHAQSKKPKSPWPTLTGDPPLVIARGGFSGLFPDSS 60
Query: 109 SIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVP 168
AY+ ++TS P +LWCDVQLTKD GICFPDL + N+S+I ++ T+QK+Y VNGVP
Sbjct: 61 YDAYNFAILTSVPDAVLWCDVQLTKDALGICFPDLTMRNSSSIEAVYPTRQKSYPVNGVP 120
Query: 169 TPGWFSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKPPGLWLNIQHDA 228
T GWF+ID++L DL ++ L +G+ SR++KFDGN I+TVQ ++ Q+KP WLN+QHDA
Sbjct: 121 TSGWFTIDFSLKDLKDVNLIRGILSRSEKFDGNSNPIMTVQSVSTQMKPSFFWLNVQHDA 180
Query: 229 FYAQHNLSMRSFVLSVSRSVVVNYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPT 288
FYAQHNLSM SF+++ S++V++++ISSPEVNF + IA RF + LVFRFLG+ E EPT
Sbjct: 181 FYAQHNLSMSSFLVAASKTVLIDFISSPEVNFFKKIAGRFGRNGPSLVFRFLGQDEFEPT 240
Query: 289 TNQTYGSLLKNLTFIKTFASGILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNF 348
TN+TYGS+L NLTF+KTFASGILVPK YI P+D+ YLLPHT++V DAHK LEVF S F
Sbjct: 241 TNRTYGSILSNLTFVKTFASGILVPKSYILPLDDQQYLLPHTSLVQDAHKAGLEVFVSGF 300
Query: 349 ANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPSAAVDCFAHLGKNASKSANL 408
ANDI I+ +YS+DP++EYLSF+DNG+FSVDGVLSDFP+T SA++DCF+H+G+NA+K +
Sbjct: 301 ANDIDIAHDYSFDPVSEYLSFVDNGNFSVDGVLSDFPITASASLDCFSHVGRNATKQVDF 360
Query: 409 LVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQS 468
LVI+K+GASGDYP CT+LAY+KAI DG D IDC VQ+S DG PFCLS I+L NST + +
Sbjct: 361 LVITKDGASGDYPGCTDLAYKKAIKDGADVIDCSVQLSSDGTPFCLSSIDLGNSTTVSLT 420
Query: 469 KFNSITTTIPEIMAGSGIFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLS 528
F + +TT+PE+ + I++FSL W EIQTL P ISNPY LFRNPK KNAGK LS
Sbjct: 421 AFRNRSTTVPELGSLGAIYTFSLTWAEIQTLTPAISNPYRVTSLFRNPKQKNAGKLFSLS 480
Query: 529 DFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEALGNAGYNKQTALKVMIQSTD 588
DFL +AKN+ SLSGVLIS+ENA YL E+QG+ V +V++ L GY+ TA KVMIQST+
Sbjct: 481 DFLSLAKNSTSLSGVLISVENAAYLREEQGLDVVKAVLDTLTQTGYSNSTATKVMIQSTN 540
Query: 589 SSVLMKLREKTSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNSAFITSAT 648
SSVL+ ++++ YE VYKV+ENIRD L+ IEDIKKFAD+VV+ K SV+P+ +FIT+ T
Sbjct: 541 SSVLVDFKKQSQYETVYKVEENIRDILDSAIEDIKKFADAVVIQKLSVFPVAQSFITTQT 600
Query: 649 DIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPMTAARY 708
++V++LQ +LPVYVE F NEF+SQ +DFF+D TVEIN+Y GAGI+G ITEFP TAARY
Sbjct: 601 NVVEKLQKSQLPVYVELFQNEFLSQPYDFFADATVEINSYITGAGINGTITEFPFTAARY 660
Query: 709 RSKLV--RKQT 717
+ L RK+T
Sbjct: 661 KRNLCLGRKET 671
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 733 | ||||||
| TAIR|locus:2116377 | 759 | SHV3 "SHAVEN 3" [Arabidopsis t | 0.888 | 0.857 | 0.600 | 5e-218 | |
| TAIR|locus:2173977 | 766 | SVL1 "SHV3-like 1" [Arabidopsi | 0.874 | 0.836 | 0.611 | 6.6e-216 | |
| TAIR|locus:2085710 | 729 | SVL3 "SHV3-like 3" [Arabidopsi | 0.866 | 0.871 | 0.527 | 3.6e-176 | |
| TAIR|locus:2155816 | 753 | SVL4 "SHV3-like 4" [Arabidopsi | 0.870 | 0.847 | 0.489 | 8.1e-163 | |
| TAIR|locus:2161248 | 750 | SVL5 "SHV3-like 5" [Arabidopsi | 0.859 | 0.84 | 0.481 | 1.2e-161 | |
| TAIR|locus:2019642 | 392 | GDPD5 "glycerophosphodiester p | 0.279 | 0.522 | 0.273 | 4.4e-08 | |
| TAIR|locus:2142823 | 372 | GDPD6 "glycerophosphodiester p | 0.300 | 0.591 | 0.233 | 5e-08 | |
| UNIPROTKB|P09394 | 358 | glpQ "GlpQ" [Escherichia coli | 0.255 | 0.522 | 0.227 | 0.00044 |
| TAIR|locus:2116377 SHV3 "SHAVEN 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2106 (746.4 bits), Expect = 5.0e-218, P = 5.0e-218
Identities = 396/659 (60%), Positives = 501/659 (76%)
Query: 67 CGVI------AQVSAQGSNATSRWQTLTGDPPFVVARGGFSGIFPDSSSIAYSLTLITSA 120
CGVI AQ+ AQ S W TLTGDPP V+ARGGFSG+FPDSS AY+ ++TS
Sbjct: 13 CGVILIQLLAAQIHAQSKKPKSPWPTLTGDPPLVIARGGFSGLFPDSSYDAYNFAILTSV 72
Query: 121 PSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPGWFSIDYTLN 180
P +LWCDVQLTKD GICFPDL + N+S+I ++ T+QK+Y VNGVPT GWF+ID++L
Sbjct: 73 PDAVLWCDVQLTKDALGICFPDLTMRNSSSIEAVYPTRQKSYPVNGVPTSGWFTIDFSLK 132
Query: 181 DLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKPPGLWLNIQHDAFYAQHNXXXXXX 240
DL ++ L +G+ SR++KFDGN I+TVQ ++ Q+KP WLN+QHDAFYAQHN
Sbjct: 133 DLKDVNLIRGILSRSEKFDGNSNPIMTVQSVSTQMKPSFFWLNVQHDAFYAQHNLSMSSF 192
Query: 241 XXXXXXXXXXNYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNL 300
++ISSPEVNF + IA RF + LVFRFLG+ E EPTTN+TYGS+L NL
Sbjct: 193 LVAASKTVLIDFISSPEVNFFKKIAGRFGRNGPSLVFRFLGQDEFEPTTNRTYGSILSNL 252
Query: 301 TFIKTFASGILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSY 360
TF+KTFASGILVPK YI P+D+ YLLPHT++V DAHK LEVF S FANDI I+ +YS+
Sbjct: 253 TFVKTFASGILVPKSYILPLDDQQYLLPHTSLVQDAHKAGLEVFVSGFANDIDIAHDYSF 312
Query: 361 DPLTEYLSFIDNGDFSVDGVLSDFPLTPSAAVDCFAHLGKNASKSANLLVISKNGASGDY 420
DP++EYLSF+DNG+FSVDGVLSDFP+T SA++DCF+H+G+NA+K + LVI+K+GASGDY
Sbjct: 313 DPVSEYLSFVDNGNFSVDGVLSDFPITASASLDCFSHVGRNATKQVDFLVITKDGASGDY 372
Query: 421 PSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEI 480
P CT+LAY+KAI DG D IDC VQ+S DG PFCLS I+L NST + + F + +TT+PE+
Sbjct: 373 PGCTDLAYKKAIKDGADVIDCSVQLSSDGTPFCLSSIDLGNSTTVSLTAFRNRSTTVPEL 432
Query: 481 MAGSGIFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSL 540
+ I++FSL W EIQTL P ISNPY LFRNPK KNAGK LSDFL +AKN+ SL
Sbjct: 433 GSLGAIYTFSLTWAEIQTLTPAISNPYRVTSLFRNPKQKNAGKLFSLSDFLSLAKNSTSL 492
Query: 541 SGVLISIENAVYLAEKQGMSVTNSVMEALGNAGYNKQTALKVMIQSTDSSVLMKLREKTS 600
SGVLIS+ENA YL E+QG+ V +V++ L GY+ TA KVMIQST+SSVL+ ++++
Sbjct: 493 SGVLISVENAAYLREEQGLDVVKAVLDTLTQTGYSNSTATKVMIQSTNSSVLVDFKKQSQ 552
Query: 601 YELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNSAFITSATDIVQRLQSFKLP 660
YE VYKV+ENIRD L+ IEDIKKFAD+VV+ K SV+P+ +FIT+ T++V++LQ +LP
Sbjct: 553 YETVYKVEENIRDILDSAIEDIKKFADAVVIQKLSVFPVAQSFITTQTNVVEKLQKSQLP 612
Query: 661 VYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPMTAARYRSKLV--RKQT 717
VYVE F NEF+SQ +DFF+D TVEIN+Y GAGI+G ITEFP TAARY+ L RK+T
Sbjct: 613 VYVELFQNEFLSQPYDFFADATVEINSYITGAGINGTITEFPFTAARYKRNLCLGRKET 671
|
|
| TAIR|locus:2173977 SVL1 "SHV3-like 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2086 (739.4 bits), Expect = 6.6e-216, P = 6.6e-216
Identities = 396/648 (61%), Positives = 490/648 (75%)
Query: 72 QVSAQGSNATSRWQTLTGDPPFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQL 131
Q+ AQ S S WQTLTGD P V+ARGGFSG+ PDSS AYS TS P +LWCDVQL
Sbjct: 32 QLFAQRSK--SPWQTLTGDAPLVIARGGFSGLLPDSSLDAYSFVSQTSVPGAVLWCDVQL 89
Query: 132 TKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPGWFSIDYTLNDLSNIILNQGV 191
TKD G+CFPD+K+ NASNI ++ ++ +YL+NGVPT WF+ID+ DL+ +IL QG+
Sbjct: 90 TKDAIGLCFPDVKMMNASNIQDVYPKRKTSYLLNGVPTQDWFTIDFNFKDLTKVILKQGI 149
Query: 192 YSRTDKFDGNGFQILTVQDMARQIKPPGLWLNIQHDAFYAQHNXXXXXXXXXXXXXXXXN 251
SR+ FDGN + I TV+D++ Q+KP G WLN+QHDAFYAQHN +
Sbjct: 150 LSRSAAFDGNSYGISTVKDISTQLKPEGFWLNVQHDAFYAQHNLSMSSFLLSISKTVIID 209
Query: 252 YISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTFASGIL 311
Y+SSPEVNF R+I RF + K VFRFL K ++E +TNQTYGSL NLTF+KTFASG+L
Sbjct: 210 YLSSPEVNFFRNIGRRFGRNGPKFVFRFLEKDDVEVSTNQTYGSLAGNLTFLKTFASGVL 269
Query: 312 VPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFID 371
VPK YIWP+ ES YLLP T+ V DAHK LEV+AS F ND +++NYS+DPL EYLSF+D
Sbjct: 270 VPKSYIWPI-ESQYLLPRTSFVQDAHKAGLEVYASGFGNDFDLAYNYSFDPLAEYLSFMD 328
Query: 372 NGDFSVDGVLSDFPLTPSAAVDCFAHLGKNASKSANLLVISKNGASGDYPSCTNLAYQKA 431
NGDFSVDG+LSDFPLT S+AVDCF+HLG NAS + LVISKNGASGDYP CT+LAY KA
Sbjct: 329 NGDFSVDGLLSDFPLTASSAVDCFSHLGSNASSQVDFLVISKNGASGDYPGCTDLAYTKA 388
Query: 432 ISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIFSFSL 491
I DG D IDC +QMS DG+PFCLS INL STN QS F + +TT+PEI + GI+SFSL
Sbjct: 389 IKDGADVIDCSLQMSSDGIPFCLSSINLGESTNVVQSPFRNRSTTVPEIGSLPGIYSFSL 448
Query: 492 IWDEIQTLIPQISNPYFK-FKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENA 550
W EIQTL P I NPY + F +FRNP+ +++GKF+ LSDFL +AKN++SL+GVLIS+ENA
Sbjct: 449 AWSEIQTLRPAIENPYSREFTMFRNPRERSSGKFVSLSDFLNLAKNSSSLTGVLISVENA 508
Query: 551 VYLAEKQGMSVTNSVMEALGNAGY-NKQTALKVMIQSTDSSVLMKLREKTSYELVYKVKE 609
YL EKQG+ +V++ L AGY NK T +VMIQST+SSVL+ ++++ YE VYKV+E
Sbjct: 509 TYLREKQGLDAVKAVLDTLTEAGYSNKTTTTRVMIQSTNSSVLIDFKKQSRYETVYKVEE 568
Query: 610 NIRDALNQTIEDIKKFADSVVLSKESVYPLNSAFITSATDIVQRLQSFKLPVYVETFSNE 669
IRD L+ IEDIKKFAD+VV+SK+SV+P + +F T T +V+RLQ F+LPVYVE F NE
Sbjct: 569 TIRDILDTAIEDIKKFADAVVISKKSVFPTSESFTTGQTKLVERLQKFQLPVYVEVFRNE 628
Query: 670 FVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPMTAARYR--SKLVRK 715
FVSQ WDFF+D TVEIN++ GAGI+G ITEFP+TAARY+ S L RK
Sbjct: 629 FVSQPWDFFADATVEINSHVTGAGINGTITEFPLTAARYKRNSCLTRK 676
|
|
| TAIR|locus:2085710 SVL3 "SHV3-like 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1711 (607.4 bits), Expect = 3.6e-176, P = 3.6e-176
Identities = 346/656 (52%), Positives = 454/656 (69%)
Query: 81 TSRWQTLTGDPPFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICF 140
+S WQTL+G PP V+ARGGFSG+FPDSS AY L IT++P V+LWCD+QLTKD GICF
Sbjct: 22 SSSWQTLSGKPPAVIARGGFSGMFPDSSIQAYQLVNITTSPDVMLWCDLQLTKDGVGICF 81
Query: 141 PDLKLDNASNIAQIFKTQQKNYLVNGVPTPGWFSIDYTLNDLSNIILNQGVYSRTDKFDG 200
P+LKLDN SN+ +I +Y FS+D+T +LS++ L QGV SR FD
Sbjct: 82 PNLKLDNGSNVIRI----DPHYKER-------FSVDFTWKELSDVKLAQGVVSRPYIFDD 130
Query: 201 NGFQILTVQDMARQIKPPGLWLNIQHDAFYAQHNXXXXXXXXXXXXXXXXNYISSPEVNF 260
IL ++++A+ + GLWLNIQ AFYA+HN N+ISSP ++F
Sbjct: 131 VS-SILAIEEVAK-LTASGLWLNIQDSAFYAKHNLSMRNSVVSLSRRLKVNFISSPGISF 188
Query: 261 LRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTFASGILVPKDYIWPV 320
L+S+ +P++TKL+FRFL + IEP TNQ+YGSL KNL++I+TF+SGILVPK YIWPV
Sbjct: 189 LKSMKNSVKPTVTKLIFRFLKQEHIEPFTNQSYGSLAKNLSYIRTFSSGILVPKSYIWPV 248
Query: 321 DESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGV 380
D +LYL PHT++V DAHKE L+VFAS FAND I++NYSYDP EYLSFIDNG+FSVDG
Sbjct: 249 DSALYLQPHTSLVTDAHKEGLQVFASEFANDFVIAYNYSYDPTAEYLSFIDNGNFSVDGF 308
Query: 381 LSDFPLTPSAAVDCFAHLG-KNASKSANLLVISKNGASGDYPSCTNLAYQKAISDGVDFI 439
LSDFP+TP A++CF+H+ K A + A + +ISKNGASGD+P CT+LAYQ+A SDG D +
Sbjct: 309 LSDFPVTPYRAINCFSHVDPKRAKEQAKITIISKNGASGDFPGCTDLAYQRAASDGADIL 368
Query: 440 DCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAG-SGIFSFSLIWDEIQT 498
DC VQMSKD +PFC+S +LINSTN ++ F ++++ + EI SGI++FSL +IQT
Sbjct: 369 DCNVQMSKDKIPFCMSSFDLINSTNVIETSFRNLSSVVSEINPRRSGIYTFSLTMSQIQT 428
Query: 499 LIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQG 558
L P ISN LFRNP+N AGKF+ LS+FL + +SL G+LI +ENA YL E QG
Sbjct: 429 LKPTISNLEKDSGLFRNPRNNKAGKFLTLSEFLFLPNRYSSLLGLLIEVENAAYLVEHQG 488
Query: 559 MSVTNSVMEALGNAG--YNKQTALKVMIQSTDSSVLMKLREKTSY---ELVYKVKENIRD 613
+SV ++V++ L A NK +A ++IQSTD SVLMK +EK ELVY+V +NIRD
Sbjct: 489 ISVVDAVLDELKRATTQQNKTSARTILIQSTDKSVLMKFKEKNKMNHDELVYRVDDNIRD 548
Query: 614 ALNQTIEDIKKFADSVVLSKESVYPLNSAFITSA-TDIVQRLQSFKLPVYVETFSNEFVS 672
+ I+DIK FA S+V+SK+SV+P I T+I +L+S L VYVE FSNE V+
Sbjct: 549 VADSAIKDIKNFAGSIVISKKSVFPYKGFIILEKETNIASKLKSNGLRVYVERFSNECVT 608
Query: 673 QAWDFFSDPTVEINTYYEGAGIDGVITEFPMTAARYRSKLVRKQTSLCLYGAGIHF 728
A+DF+ DPT+EI+++ IDG+IT+FP T ARYR + L G I F
Sbjct: 609 HAFDFYDDPTLEIDSFVRDVQIDGIITDFPATTARYRKNKCYGEFGLTTTGELITF 664
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| TAIR|locus:2155816 SVL4 "SHV3-like 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1585 (563.0 bits), Expect = 8.1e-163, P = 8.1e-163
Identities = 316/646 (48%), Positives = 416/646 (64%)
Query: 66 HCGVIAQVSAQGSNAT--SRWQTLTGDPPFVVARGGFSGIFPDSSSIAYSLTLITSAPSV 123
H V A + + A +W TL G P VVARGGFSG+FP+SS A L + TS+P
Sbjct: 13 HSSVAAPKTPAAAAAVPAKKWLTLNGQEPAVVARGGFSGLFPESSISANDLAIGTSSPGF 72
Query: 124 ILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPGWFSIDYTLNDLS 183
+ C++Q+TKD G+C D++LDNA+ I+ +F QK Y VNG GWF IDY + +
Sbjct: 73 TMLCNLQMTKDGVGLCLSDIRLDNATTISSVFPKAQKTYKVNGQDLKGWFVIDYDADTIF 132
Query: 184 N-IILNQGVYSRTDKFDGNGFQILTVQDMARQIKPPGLWLNIQHDAFYAQHNXXXXXXXX 242
N + L Q ++SR FDG + V+D+ KPP WL++Q+DAFY +H
Sbjct: 133 NKVTLVQNIFSRPSIFDGQ-MSVSAVEDVLGT-KPPKFWLSVQYDAFYMEHKLSPAEYLR 190
Query: 243 XXXXXXXXNYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTF 302
N ISSPE+ FL+SI + TKL+F F +EPTTN+ Y + +NL
Sbjct: 191 SLRFRGI-NVISSPEIGFLKSIGMDAGRAKTKLIFEFKDPEAVEPTTNKKYSEIQQNLAA 249
Query: 303 IKTFASGILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDP 362
IK FASG+LVPKDYIWP+D + YL P TT V DAHK LEV+AS FAND+ SFNYSYDP
Sbjct: 250 IKAFASGVLVPKDYIWPIDSAKYLKPATTFVADAHKAGLEVYASGFANDLRTSFNYSYDP 309
Query: 363 LTEYLSFIDNGDFSVDGVLSDFPLTPSAAVDCFAHLGKNASKSANLLVISKNGASGDYPS 422
EYL F+DNG FSVDGV++DFP T S ++ CF+H N K+ + LVI+ NGASGDYP
Sbjct: 310 SAEYLQFVDNGQFSVDGVITDFPPTASQSITCFSHQNGNLPKAGHALVITHNGASGDYPG 369
Query: 423 CTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMA 482
CT+LAYQKAI DG D IDC VQMSKDG+ FC +L ST A ++ F S T++PEI
Sbjct: 370 CTDLAYQKAIDDGADIIDCSVQMSKDGIAFCHDAADLSASTTA-RTTFMSRATSVPEIQP 428
Query: 483 GSGIFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSG 542
+GIFSF L W EIQ++ PQI NP+ RNP NKNAGKF L+DFLE+ K A +++G
Sbjct: 429 TNGIFSFDLTWAEIQSVKPQIENPFTATGFQRNPANKNAGKFTTLADFLELGK-AKAVTG 487
Query: 543 VLISIENAVYLAEKQGMSVTNSVMEALGNAGYNKQTALKVMIQSTDSSVLMKLREKTSYE 602
VLI+I+NA YLA K+G+ V + V AL N+ +KQ+ KV+IQS DSSVL Y
Sbjct: 488 VLINIQNAAYLASKKGLGVVDVVKSALTNSTLDKQSTQKVLIQSDDSSVLSSFEAVPPYT 547
Query: 603 LVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNSAFITSATDIVQRLQSFKLPVY 662
V + + I DA +IE+IKK AD+V L + S+ ++ +F T T++V+ + + VY
Sbjct: 548 RVLSIDKEIGDAPKTSIEEIKKHADAVNLLRTSLITVSQSFATGKTNVVEEMHKANISVY 607
Query: 663 VETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPMTAARY 708
V NE+++ A+D+FSDPT+E+ T+ G G+DGVITEFP TA RY
Sbjct: 608 VSVLRNEYIAIAFDYFSDPTIELATFIAGRGVDGVITEFPATATRY 653
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| TAIR|locus:2161248 SVL5 "SHV3-like 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1574 (559.1 bits), Expect = 1.2e-161, P = 1.2e-161
Identities = 306/636 (48%), Positives = 416/636 (65%)
Query: 74 SAQGSNATSRWQTLTGDPPFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTK 133
+A + +W TL G P VVARGGFSG+FP+SS+ A L + TS+P + + C++Q+TK
Sbjct: 23 AAAAAVPAKKWLTLNGQEPAVVARGGFSGLFPESSASANDLAIGTSSPGLTMLCNLQMTK 82
Query: 134 DEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPGWFSIDYTLNDL-SNIILNQGVY 192
D G+C D+ LDNA+ I+ +F QK Y VNG GWF +DY + + +N+ L Q ++
Sbjct: 83 DGVGLCLSDIILDNATTISSVFPKAQKTYKVNGQDLKGWFVLDYDADTIFNNVTLVQNIF 142
Query: 193 SRTDKFDGNGFQILTVQDMARQIKPPGLWLNIQHDAFYAQHNXXXXXXXXXXXXXXXXNY 252
SR FDG + V+D+ KPP WL++Q+DAFY +H N
Sbjct: 143 SRPSIFDGQ-MSVSAVEDVLGT-KPPKFWLSVQYDAFYMEHKLSPAEYLRSLQFRGI-NV 199
Query: 253 ISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTFASGILV 312
ISSPE+ FL+SI + TKL+F F +EPTTN+ Y + +NL IK FASG+LV
Sbjct: 200 ISSPEIGFLKSIGMDAGRAKTKLIFEFKDPEAVEPTTNKKYSEIQQNLAAIKAFASGVLV 259
Query: 313 PKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDN 372
PKDYIWP+D + YL P TT V DAHK LEV+AS FAND+ SFNYSYDP EYL F+DN
Sbjct: 260 PKDYIWPIDSAKYLKPATTFVADAHKAGLEVYASGFANDLRTSFNYSYDPSAEYLQFVDN 319
Query: 373 GDFSVDGVLSDFPLTPSAAVDCFAHLGKNASKSANLLVISKNGASGDYPSCTNLAYQKAI 432
G FSVDGV++DFP T S ++ CF+H N K+ + LVI+ NGASGDYP CT+LAYQKA+
Sbjct: 320 GQFSVDGVITDFPPTASQSITCFSHQNGNLPKAGHALVITHNGASGDYPGCTDLAYQKAV 379
Query: 433 SDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIFSFSLI 492
DG D IDC VQMSKDG+ FC +L ST A + F S T++PEI +GIFSF L
Sbjct: 380 DDGADVIDCSVQMSKDGIAFCHDAADLTASTTA-MTIFMSRATSVPEIQPTNGIFSFDLT 438
Query: 493 WDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVY 552
W EIQ++ PQI NP+ RNP NKNAGKF+ L+DFL+ +K A +++GV+I+IENA Y
Sbjct: 439 WAEIQSVKPQIENPFTATGFQRNPANKNAGKFITLADFLDFSK-AKAVTGVMINIENAAY 497
Query: 553 LAEKQGMSVTNSVMEALGNAGYNKQTALKVMIQSTDSSVLMKLREKTSYELVYKVKENIR 612
LA K+G+ V ++V AL + +KQ+ KV+IQS DSSVL Y V + + I
Sbjct: 498 LASKKGLGVVDAVKSALAKSTLDKQSTQKVLIQSDDSSVLASFEAVPPYTRVLSIDKEIG 557
Query: 613 DALNQTIEDIKKFADSVVLSKESVYPLNSAFITSATDIVQRLQSFKLPVYVETFSNEFVS 672
A ++++IKK+A++V L + S+ ++ +F T T++V+ + + VYV NE++S
Sbjct: 558 GAPKPSVDEIKKYAEAVNLLRTSLVTVSQSFTTGKTNVVEEMHKGNISVYVSVLRNEYIS 617
Query: 673 QAWDFFSDPTVEINTYYEGAGIDGVITEFPMTAARY 708
A+D+FSDPT+E+ T+ G+G+DGVITEFP TA RY
Sbjct: 618 VAFDYFSDPTIELATFISGSGVDGVITEFPATATRY 653
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| TAIR|locus:2019642 GDPD5 "glycerophosphodiester phosphodiesterase 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 157 (60.3 bits), Expect = 4.4e-08, P = 4.4e-08
Identities = 62/227 (27%), Positives = 100/227 (44%)
Query: 411 ISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKF 470
I+ G++G+ P T AY KAI +G DFI+ + SKDGV C L +TN A K
Sbjct: 47 IAHRGSNGEIPEETTAAYLKAIEEGTDFIETDILSSKDGVLICFHDCILDETTNVASHKE 106
Query: 471 NSITTTIPEIMAGS--GIFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLS 528
+ ++ + G F+F E++ L +I Y FR+ + +
Sbjct: 107 FADRKRTYDVQGFNITGFFTFDFTLKELKQL--RIKQRY----AFRDQQYNGMYPIITFE 160
Query: 529 DFLEMAKNANSLSGVLISIENAVYLAEKQ----GMSVTNSVMEALGNAGY-----NKQTA 579
+FL +A++A + G+ I+N V + + G + V+E L GY +K+
Sbjct: 161 EFLTIARDAPRVVGIYPEIKNPVLMNQHVKWPGGKKFEDKVVETLKKYGYGGSYLSKKWL 220
Query: 580 LK-VMIQS---TDSSVLMKLREKTSYELVYKVKENIRDALNQTIEDI 622
K + IQS T + L + L+ V +D NQT +I
Sbjct: 221 KKPLFIQSFAPTSLVYISNLTDSPKVLLIDDVTMPTQDT-NQTYAEI 266
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| TAIR|locus:2142823 GDPD6 "glycerophosphodiester phosphodiesterase 6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 156 (60.0 bits), Expect = 5.0e-08, P = 5.0e-08
Identities = 56/240 (23%), Positives = 110/240 (45%)
Query: 397 HLGKNASKSANLLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSF 456
H K +++ ++ G++G+ P T AY +AI +G DFI+ + SKDGV C
Sbjct: 33 HATKKPLQTSRPYNLAHRGSNGELPEETAPAYMRAIEEGADFIETDILSSKDGVLICHHD 92
Query: 457 INLINSTNAAQSKFNSITTTIPEI--MAGSGIFSFSLIWDEIQTLIPQISNPYFKFKLFR 514
+NL ++T+ A K + E+ M +G F+ E++TL + P FR
Sbjct: 93 VNLDDTTDVADHKEFADRKRTYEVQGMNMTGFFTVDFTLKELKTLGAKQRYP------FR 146
Query: 515 NPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEK----QGMSVTNSVMEALG 570
+ + + +++ +A +A + G+ I+N V++ ++ G + +E L
Sbjct: 147 DQQYNGKFPIITFDEYISIALDAPRVVGIYPEIKNPVFMNQQVKWADGKKFEDKFVETLK 206
Query: 571 NAGYN----KQTALK--VMIQSTDSSVLMKLREKTSYELVYKVKEN--IRDALNQTIEDI 622
GY + LK + IQS ++ L+ + T ++ + + + + N+T +I
Sbjct: 207 KYGYKGSYLSEDWLKQPIFIQSFAATSLVYISNMTDSPKLFLIDDVTILTEDTNKTYAEI 266
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| UNIPROTKB|P09394 glpQ "GlpQ" [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
|---|
Score = 95 (38.5 bits), Expect = 0.00044, Sum P(2) = 0.00044
Identities = 47/207 (22%), Positives = 86/207 (41%)
Query: 402 ASKSANLLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLIN 461
A+ S +VI+ GASG P T A A + G D+++ + M+KD NL+
Sbjct: 25 AADSNEKIVIAHRGASGYLPEHTLPAKAMAYAQGADYLEQDLVMTKDD--------NLVV 76
Query: 462 STNAAQSKFNSITTTIPEIMAGSG-IFSFSLIWDEIQTL-IPQ---ISNPYFKFKLF--R 514
+ + + P+ G ++ DEI++L + I N K + + R
Sbjct: 77 LHDHYLDRVTDVADRFPDRARKDGRYYAIDFTLDEIKSLKFTEGFDIENGK-KVQTYPGR 135
Query: 515 NPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIE---NAVYLAEKQGMSVTNSVMEALGN 571
P K+ + + +E + N +G I I A + ++G + +E L
Sbjct: 136 FPMGKSDFRVHTFEEEIEFVQGLNHSTGKNIGIYPEIKAPWFHHQEGKDIAAKTLEVLKK 195
Query: 572 AGYNKQTALKVMIQSTDSSVLMKLREK 598
GY + KV +Q D+ L +++ +
Sbjct: 196 YGYTGKDD-KVYLQCFDADELKRIKNE 221
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9SZ11 | GLPQ2_ARATH | 3, ., 1, ., 4, ., 4, 6 | 0.6095 | 0.9017 | 0.8708 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | gw1.I.4589.1 | hypothetical protein (678 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 733 | |||
| cd08603 | 299 | cd08603, GDPD_SHV3_repeat_1, Glycerophosphodiester | 1e-167 | |
| cd08604 | 300 | cd08604, GDPD_SHV3_repeat_2, Glycerophosphodiester | 1e-162 | |
| cd08571 | 302 | cd08571, GDPD_SHV3_plant, Glycerophosphodiester ph | 1e-129 | |
| cd08571 | 302 | cd08571, GDPD_SHV3_plant, Glycerophosphodiester ph | 1e-109 | |
| cd08602 | 309 | cd08602, GDPD_ScGlpQ1_like, Glycerophosphodiester | 1e-36 | |
| cd08559 | 296 | cd08559, GDPD_periplasmic_GlpQ_like, Periplasmic g | 1e-35 | |
| cd08602 | 309 | cd08602, GDPD_ScGlpQ1_like, Glycerophosphodiester | 6e-34 | |
| cd08559 | 296 | cd08559, GDPD_periplasmic_GlpQ_like, Periplasmic g | 1e-24 | |
| cd08603 | 299 | cd08603, GDPD_SHV3_repeat_1, Glycerophosphodiester | 3e-21 | |
| pfam03009 | 238 | pfam03009, GDPD, Glycerophosphoryl diester phospho | 5e-20 | |
| cd08600 | 318 | cd08600, GDPD_EcGlpQ_like, Glycerophosphodiester p | 8e-17 | |
| cd08604 | 300 | cd08604, GDPD_SHV3_repeat_2, Glycerophosphodiester | 4e-16 | |
| COG0584 | 257 | COG0584, UgpQ, Glycerophosphoryl diester phosphodi | 3e-11 | |
| PRK11143 | 355 | PRK11143, glpQ, glycerophosphodiester phosphodiest | 1e-09 | |
| cd08600 | 318 | cd08600, GDPD_EcGlpQ_like, Glycerophosphodiester p | 4e-09 | |
| cd08556 | 189 | cd08556, GDPD, Glycerophosphodiester phosphodieste | 7e-08 | |
| cd08601 | 256 | cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester p | 2e-07 | |
| cd08610 | 316 | cd08610, GDPD_GDE6, Glycerophosphodiester phosphod | 1e-05 | |
| cd08563 | 230 | cd08563, GDPD_TtGDE_like, Glycerophosphodiester ph | 1e-05 | |
| cd08570 | 234 | cd08570, GDPD_YPL206cp_fungi, Glycerophosphodieste | 2e-05 | |
| cd08581 | 229 | cd08581, GDPD_like_1, Glycerophosphodiester phosph | 3e-05 | |
| cd08582 | 233 | cd08582, GDPD_like_2, Glycerophosphodiester phosph | 9e-05 | |
| cd08580 | 263 | cd08580, GDPD_Rv2277c_like, Glycerophosphodiester | 3e-04 | |
| cd08574 | 252 | cd08574, GDPD_GDE_2_3_6, Glycerophosphodiester pho | 3e-04 | |
| cd08566 | 240 | cd08566, GDPD_AtGDE_like, Glycerophosphodiester ph | 0.001 | |
| cd08562 | 229 | cd08562, GDPD_EcUgpQ_like, Glycerophosphodiester p | 0.002 | |
| cd08575 | 264 | cd08575, GDPD_GDE4_like, Glycerophosphodiester pho | 0.002 | |
| cd08609 | 315 | cd08609, GDPD_GDE3, Glycerophosphodiester phosphod | 0.002 | |
| COG0584 | 257 | COG0584, UgpQ, Glycerophosphoryl diester phosphodi | 0.003 |
| >gnl|CDD|176545 cd08603, GDPD_SHV3_repeat_1, Glycerophosphodiester phosphodiesterase domain repeat 1 of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins | Back alignment and domain information |
|---|
Score = 483 bits (1245), Expect = e-167
Identities = 193/300 (64%), Positives = 235/300 (78%), Gaps = 1/300 (0%)
Query: 92 PFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNI 151
P V+ARGGFSG+FPDSS AY +S+P V LWCD+QLTKD GIC PDL LDN++ I
Sbjct: 1 PLVIARGGFSGLFPDSSLFAYQFAASSSSPDVALWCDLQLTKDGVGICLPDLNLDNSTTI 60
Query: 152 AQIFKTQQKNYLVNGVPTPGWFSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDM 211
A+++ ++K Y VNGV T GWFS+D+TL +L + L QG++SRT FDG + I TV+D+
Sbjct: 61 ARVYPKRKKTYSVNGVSTKGWFSVDFTLAELQQVTLIQGIFSRTPIFDGQ-YPISTVEDV 119
Query: 212 ARQIKPPGLWLNIQHDAFYAQHNLSMRSFVLSVSRSVVVNYISSPEVNFLRSIAARFRPS 271
KP GLWLN+QHDAFY QHNLSM S++LS+S++V V+YISSPEV FL+SI R +
Sbjct: 120 VTLAKPEGLWLNVQHDAFYQQHNLSMSSYLLSLSKTVKVDYISSPEVGFLKSIGGRVGRN 179
Query: 272 MTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTFASGILVPKDYIWPVDESLYLLPHTT 331
TKLVFRFL K ++EP+TNQTYGS+LKNLTFIKTFASGILVPK YIWPVD YL P T+
Sbjct: 180 GTKLVFRFLDKDDVEPSTNQTYGSILKNLTFIKTFASGILVPKSYIWPVDSDQYLQPATS 239
Query: 332 IVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPSAA 391
+V DAHK LEV+AS FAND IS+NYSYDP+ EYLSF+ NG+FSVDGVLSDFP+T S A
Sbjct: 240 LVQDAHKAGLEVYASGFANDFDISYNYSYDPVAEYLSFVGNGNFSVDGVLSDFPITASEA 299
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This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) repeat 1 present in glycerophosphodiester phosphodiesterase (GP-GDE)-like protein SHV3 and SHV3-like proteins (SVLs), which may play an important role in cell wall organization. The prototype of this family is a glycosylphosphatidylinositol (GPI) anchored protein SHV3 encoded by shaven3 (shv3) gene from Arabidopsis thaliana. Members in this family show sequence homology to bacterial GP-GDEs (EC 3.1.4.46) that catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Both, SHV3 and SVLs, have two tandemly repeated GDPD domains whose biochemical functions remain unclear. The residues essential for interactions with the substrates and calcium ions in bacterial GP-GDEs are not conserved in SHV3 and SVLs, which suggests that the function of GDPD domains in these proteins might be distinct from those in typical bacterial GP-GDEs. In addition, the two tandem repeats show low sequence similarity to each other, suggesting they have different biochemical function. Most of the members of this family are Arabidopsis-specific gene products. To date, SHV3 orthologues are only found in Physcomitrella patens. This family includes domain I, the first GDPD domain of SHV3 and SVLs. Length = 299 |
| >gnl|CDD|176546 cd08604, GDPD_SHV3_repeat_2, Glycerophosphodiester phosphodiesterase domain repeat 2 of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins | Back alignment and domain information |
|---|
Score = 471 bits (1213), Expect = e-162
Identities = 197/300 (65%), Positives = 242/300 (80%), Gaps = 1/300 (0%)
Query: 409 LVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQS 468
L+IS NGASGDYP CT+LAYQKA+ DG D IDC VQMSKDGVPFCL INLINST A S
Sbjct: 2 LIISHNGASGDYPGCTDLAYQKAVKDGADVIDCSVQMSKDGVPFCLDSINLINSTTVATS 61
Query: 469 KFNSITTTIPEIMAGSGIFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLS 528
KF++ TT+PEI + SGIF+F L W EIQTL P ISNPY LFRNP NKNAGKF+ LS
Sbjct: 62 KFSNRATTVPEIGSTSGIFTFDLTWSEIQTLKPAISNPYSVTGLFRNPANKNAGKFLTLS 121
Query: 529 DFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEALGNAGYNKQTALKVMIQSTD 588
DFL++AKN SLSGVLI++ENA YLAEK+G+ V ++V++AL NAGY+ QTA KV+IQSTD
Sbjct: 122 DFLDLAKN-KSLSGVLINVENAAYLAEKKGLDVVDAVLDALTNAGYDNQTAQKVLIQSTD 180
Query: 589 SSVLMKLREKTSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNSAFITSAT 648
SSVL +++ SYE VY V E IRDA + +IE+IKKFAD+VV+ + SV+P++++F+T T
Sbjct: 181 SSVLAAFKKQISYERVYVVDETIRDASDSSIEEIKKFADAVVIDRGSVFPVSTSFLTRQT 240
Query: 649 DIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPMTAARY 708
++V++LQS L VYVE NEFVS A+DFF+DPTVEIN+Y +GAG+DG ITEFP TAARY
Sbjct: 241 NVVEKLQSANLTVYVEVLRNEFVSLAFDFFADPTVEINSYVQGAGVDGFITEFPATAARY 300
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) repeat 2 present in glycerophosphodiester phosphodiesterase (GP-GDE)-like protein SHV3 and SHV3-like proteins (SVLs), which may play important an role in cell wall organization. The prototype of this family is a glycosylphosphatidylinositol (GPI) anchored protein SHV3 encoded by shaven3 (shv3) gene from Arabidopsis thaliana. Members in this family show sequence homology to bacterial GP-GDEs (EC 3.1.4.46) that catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Both, SHV3 and SVLs, have two tandemly repeated GDPD domains whose biochemical functions remain unclear. The residues essential for interactions with the substrates and calcium ions in bacterial GP-GDEs are not conserved in SHV3 and SVLs, which suggests that the function of GDPD domains in these proteins might be distinct from those in typical bacterial GP-GDEs. In addition, the two tandem repeats show low sequence similarity to each other, suggesting they have different biochemical function. Most of the members of this family are Arabidopsis-specific gene products. To date, SHV3 orthologues are only found in Physcomitrella patens. This CD includes domain II (the second GDPD domain of SHV3 and SVLs), which is necessary for SHV3 function. Length = 300 |
| >gnl|CDD|176513 cd08571, GDPD_SHV3_plant, Glycerophosphodiester phosphodiesterase domain of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins | Back alignment and domain information |
|---|
Score = 383 bits (987), Expect = e-129
Identities = 152/305 (49%), Positives = 197/305 (64%), Gaps = 9/305 (2%)
Query: 409 LVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQS 468
LVI++ GASGDYP T+LAYQKAISDG D +DC VQ++KDGVP CL INL NST A
Sbjct: 2 LVIARGGASGDYPDSTDLAYQKAISDGADVLDCDVQLTKDGVPICLPSINLDNSTTIASV 61
Query: 469 KFNSITTTIPEIMAGSGIFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLS 528
T + E + SGIFSF L W EIQTL P ISNP+ FRNP+N NAGK + L
Sbjct: 62 FPKRKKTYVVEGQSTSGIFSFDLTWAEIQTLKPIISNPFSVL--FRNPRNDNAGKILTLE 119
Query: 529 DFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEALGNAGYNKQTALKVMIQSTD 588
DFL +AK SLSGV I++ENA +LAE +G+ ++V+ +L AGY+ QTA KV I S D
Sbjct: 120 DFLTLAKP-KSLSGVWINVENAAFLAEHKGLLSVDAVLTSLSKAGYD-QTAKKVYISSPD 177
Query: 589 SSVLMKLREK---TSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNSA-FI 644
SSVL +++ V V + D L + +IKKFA V++ K ++P++S F+
Sbjct: 178 SSVLKSFKKRVGTKLVFRVLDVDDTEPDTLLSNLTEIKKFASGVLVPKSYIWPVDSDSFL 237
Query: 645 TSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTY-YEGAGIDGVITEFPM 703
T T +VQ L VYV F+NEFVS A+D+ +DPT+EI ++ G +DGVIT+FP
Sbjct: 238 TPQTSVVQDAHKAGLEVYVSGFANEFVSLAYDYSADPTLEILSFVGNGNSVDGVITDFPA 297
Query: 704 TAARY 708
TAAR
Sbjct: 298 TAARA 302
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase (GDPD) domain present in glycerophosphodiester phosphodiesterase (GP-GDE)-like protein SHV3 and SHV3-like proteins (SVLs), which may play an important role in cell wall organization. The prototype of this family is a glycosylphosphatidylinositol (GPI) anchored protein SHV3 encoded by shaven3 (shv3) gene from Arabidopsis thaliana. Members in this family show sequence homology to bacterial GP-GDEs (EC 3.1.4.46) that catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Both, SHV3 and SVLs, have two tandemly repeated GDPD domains whose biochemical functions remain unclear. The residues essential for interactions with the substrates and calcium ions in bacterial GP-GDEs are not conserved in SHV3 and SVLs, which suggests that the function of GDPD domains in these proteins might be distinct from those in typical bacterial GP-GDEs. In addition, the two tandem repeats show low sequence similarity to each other, suggesting they have different biochemical function. Most members of this family are Arabidopsis-specific gene products. To date, SHV3 orthologues are only found in Physcomitrella patens. Length = 302 |
| >gnl|CDD|176513 cd08571, GDPD_SHV3_plant, Glycerophosphodiester phosphodiesterase domain of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins | Back alignment and domain information |
|---|
Score = 333 bits (856), Expect = e-109
Identities = 134/314 (42%), Positives = 186/314 (59%), Gaps = 26/314 (8%)
Query: 92 PFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNI 151
P V+ARGG SG +PDS+ +AY + A +L CDVQLTKD IC P + LDN++ I
Sbjct: 1 PLVIARGGASGDYPDSTDLAYQKAISDGA--DVLDCDVQLTKDGVPICLPSINLDNSTTI 58
Query: 152 AQIFKTQQKNYLVNGVPTPGWFSIDYTLNDLSNIILNQGVYSR---TDKFDGNGFQILTV 208
A +F ++K Y+V G T G FS D T ++ + + + N +ILT+
Sbjct: 59 ASVFPKRKKTYVVEGQSTSGIFSFDLTWAEIQTLKPIISNPFSVLFRNPRNDNAGKILTL 118
Query: 209 QDMARQIKP---PGLWLNIQHDAFYAQH--NLSMRSFVLSVSR-----SVVVNYISSPEV 258
+D KP G+W+N+++ AF A+H LS+ + + S+S+ + YISSP+
Sbjct: 119 EDFLTLAKPKSLSGVWINVENAAFLAEHKGLLSVDAVLTSLSKAGYDQTAKKVYISSPDS 178
Query: 259 NFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTFASGILVPKDYIW 318
+ L+S R TKLVFR L + EP T LL NLT IK FASG+LVPK YIW
Sbjct: 179 SVLKSFKKRVG---TKLVFRVLDVDDTEPDT------LLSNLTEIKKFASGVLVPKSYIW 229
Query: 319 PVDESLYLLPHTTIVLDAHKERLEVFASNFAND-IPISFNYSYDPLTEYLSFIDNGDFSV 377
PVD +L P T++V DAHK LEV+ S FAN+ + ++++YS DP E LSF+ NG SV
Sbjct: 230 PVDSDSFLTPQTSVVQDAHKAGLEVYVSGFANEFVSLAYDYSADPTLEILSFVGNG-NSV 288
Query: 378 DGVLSDFPLTPSAA 391
DGV++DFP T + A
Sbjct: 289 DGVITDFPATAARA 302
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase (GDPD) domain present in glycerophosphodiester phosphodiesterase (GP-GDE)-like protein SHV3 and SHV3-like proteins (SVLs), which may play an important role in cell wall organization. The prototype of this family is a glycosylphosphatidylinositol (GPI) anchored protein SHV3 encoded by shaven3 (shv3) gene from Arabidopsis thaliana. Members in this family show sequence homology to bacterial GP-GDEs (EC 3.1.4.46) that catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Both, SHV3 and SVLs, have two tandemly repeated GDPD domains whose biochemical functions remain unclear. The residues essential for interactions with the substrates and calcium ions in bacterial GP-GDEs are not conserved in SHV3 and SVLs, which suggests that the function of GDPD domains in these proteins might be distinct from those in typical bacterial GP-GDEs. In addition, the two tandem repeats show low sequence similarity to each other, suggesting they have different biochemical function. Most members of this family are Arabidopsis-specific gene products. To date, SHV3 orthologues are only found in Physcomitrella patens. Length = 302 |
| >gnl|CDD|176544 cd08602, GDPD_ScGlpQ1_like, Glycerophosphodiester phosphodiesterase domain of Streptomycin coelicolor (GlpQ1) and similar proteins | Back alignment and domain information |
|---|
Score = 139 bits (353), Expect = 1e-36
Identities = 88/316 (27%), Positives = 143/316 (45%), Gaps = 30/316 (9%)
Query: 409 LVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQS 468
LVI+ GASG P T AYQ AI G DFI+ + +KDGV C L +T+ A
Sbjct: 2 LVIAHRGASGYRPEHTLAAYQLAIEQGADFIEPDLVSTKDGVLICRHEPELSGTTDVADH 61
Query: 469 K--FNSITTTIPEIMAGSGIFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMK 526
+ TT + + +G F+ E++TL + PY R+
Sbjct: 62 PEFADRKTTKTVDGVNVTGWFTEDFTLAELKTLRARQRLPY------RDQSYDGQFPIPT 115
Query: 527 LSDFLEMAKNANSLS----GVLISIENAVYLAEKQGMSVTNSVMEALGNAGYNKQTALKV 582
+ + +AK A++ + G+ I++ Y G+ + + ++E L GY + A V
Sbjct: 116 FEEIIALAKAASAATGRTVGIYPEIKHPTYFNAPLGLPMEDKLLETLKKYGYTGKKA-PV 174
Query: 583 MIQSTDSSVLMKLREKTSYELVY---KVKENIRDAL---NQT---------IEDIKKFAD 627
IQS + + L LR KT LV +D ++T +++I +AD
Sbjct: 175 FIQSFEVTNLKYLRNKTDLPLVQLIDDATIPPQDTPEGDSRTYADLTTDAGLKEIATYAD 234
Query: 628 SVVLSKESVYPLNSA-FITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEIN 686
+ K+ + P ++ + + TD+V+ + L V+ TF NE DFF DP E
Sbjct: 235 GIGPWKDLIIPSDANGRLGTPTDLVEDAHAAGLQVHPYTFRNENTFLPPDFFGDPYAEYR 294
Query: 687 TYYEGAGIDGVITEFP 702
+ + AG+DG+ T+FP
Sbjct: 295 AFLD-AGVDGLFTDFP 309
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of putative bacterial and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) similar to Escherichia coli periplasmic phosphodiesterase GlpQ, as well as plant glycerophosphodiester phosphodiesterases (GP-PDEs), all of which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. The prototypes of this family include putative secreted phosphodiesterase encoded by gene glpQ1 (SCO1565) from the pho regulon in Streptomyces coelicolor genome, and in plants, two distinct Arabidopsis thaliana genes, AT5G08030 and AT1G74210, coding putative GP-PDEs from the cell walls and vacuoles, respectively. Length = 309 |
| >gnl|CDD|176502 cd08559, GDPD_periplasmic_GlpQ_like, Periplasmic glycerophosphodiester phosphodiesterase domain (GlpQ) and similar proteins | Back alignment and domain information |
|---|
Score = 136 bits (344), Expect = 1e-35
Identities = 83/311 (26%), Positives = 132/311 (42%), Gaps = 33/311 (10%)
Query: 409 LVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQS 468
LVI+ GASG P T AY AI G D+I+ + M+KDGV L +TN A+
Sbjct: 2 LVIAHRGASGYAPEHTLAAYALAIEMGADYIEQDLVMTKDGVLVARHDPTLDRTTNVAEH 61
Query: 469 KFNSITTTIPEI-MAGSGIFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKL 527
P +G F E++TL + + + + R P K L
Sbjct: 62 F--------PFRGRKDTGYFVIDFTLAELKTL--RAGSWFNQRYPERAPSYYGGFKIPTL 111
Query: 528 SDFLEMAKNANSLS----GVLISIENAVYLAEKQGMSVTNSVMEALGNAGYNKQTALKVM 583
+ +E+A+ N + G+ ++ + ++G + ++E L GY + V
Sbjct: 112 EEVIELAQGLNKSTGRNVGIYPETKHPTFHK-QEGPDIEEKLLEVLKKYGYTGKND-PVF 169
Query: 584 IQSTDSSVLMKLREKT-SYELVYKVKEN-IRDALNQT----------IEDIKKFADSVVL 631
IQS + L +LR +T LV + + + +++I K+AD +
Sbjct: 170 IQSFEPESLKRLRNETPDIPLVQLIDYGDWAETDKKYTYAWLTTDAGLKEIAKYADGIGP 229
Query: 632 SKESVYPLNSAFITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEG 691
K + P +S + TD+V+ L V+ TF NE + A DF D N
Sbjct: 230 WKSLIIPEDSNGLLVPTDLVKDAHKAGLLVHPYTFRNENLFLAPDFKQDMDALYNA---- 285
Query: 692 AGIDGVITEFP 702
AG+DGV T+FP
Sbjct: 286 AGVDGVFTDFP 296
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in bacterial and eukaryotic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) similar to Escherichia coli periplasmic phosphodiesterase GlpQ. GP-GDEs are involved in glycerol metabolism and catalyze the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. In E. coli, there are two major G3P uptake systems: Glp and Ugp, which contain genes coding for two different GP-GDEs. GlpQ gene from the glp operon codes for a periplasmic phosphodiesterase GlpQ. GlpQ is a dimeric enzyme that hydrolyzes periplasmic glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG), glycerophosphoinositol (GPI), and glycerophosphoserine (GPS), to the corresponding alcohols and G3P, which is subsequently transported into the cell through the GlpT transport system. Ca2+ is required for GlpQ enzymatic activity. This subfamily also includes some GP-GDEs in higher plants and their eukaryotic homologs, which show very high sequence similarities with bacterial periplasmic GP-GDEs. Length = 296 |
| >gnl|CDD|176544 cd08602, GDPD_ScGlpQ1_like, Glycerophosphodiester phosphodiesterase domain of Streptomycin coelicolor (GlpQ1) and similar proteins | Back alignment and domain information |
|---|
Score = 132 bits (333), Expect = 6e-34
Identities = 91/322 (28%), Positives = 141/322 (43%), Gaps = 41/322 (12%)
Query: 92 PFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNI 151
P V+A G SG P+ + AY L + A + D+ TKD IC + +L +++
Sbjct: 1 PLVIAHRGASGYRPEHTLAAYQLAIEQGAD--FIEPDLVSTKDGVLICRHEPELSGTTDV 58
Query: 152 AQI--FKTQQKNYLVNGVPTPGWFSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQ 209
A F ++ V+GV GWF+ D+TL +L + Q + R +DG F I T +
Sbjct: 59 ADHPEFADRKTTKTVDGVNVTGWFTEDFTLAELKTLRARQRLPYRDQSYDGQ-FPIPTFE 117
Query: 210 DM--------ARQIKPPGLWLNIQHDAFYAQH-NLSMRSFVLSV--------SRSVVVNY 252
++ A + G++ I+H ++ L M +L ++ V +
Sbjct: 118 EIIALAKAASAATGRTVGIYPEIKHPTYFNAPLGLPMEDKLLETLKKYGYTGKKAPV--F 175
Query: 253 ISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPT------TNQTYGSLL--KNLTFIK 304
I S EV L+ + + T L L P ++TY L L I
Sbjct: 176 IQSFEVTNLKYLR-----NKTDLPLVQLIDDATIPPQDTPEGDSRTYADLTTDAGLKEIA 230
Query: 305 TFASGILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFAN-DIPISFNYSYDPL 363
T+A GI KD I P D + L T +V DAH L+V F N + + ++ DP
Sbjct: 231 TYADGIGPWKDLIIPSDANGRLGTPTDLVEDAHAAGLQVHPYTFRNENTFLPPDFFGDPY 290
Query: 364 TEYLSFIDNGDFSVDGVLSDFP 385
EY +F+D G VDG+ +DFP
Sbjct: 291 AEYRAFLDAG---VDGLFTDFP 309
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of putative bacterial and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) similar to Escherichia coli periplasmic phosphodiesterase GlpQ, as well as plant glycerophosphodiester phosphodiesterases (GP-PDEs), all of which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. The prototypes of this family include putative secreted phosphodiesterase encoded by gene glpQ1 (SCO1565) from the pho regulon in Streptomyces coelicolor genome, and in plants, two distinct Arabidopsis thaliana genes, AT5G08030 and AT1G74210, coding putative GP-PDEs from the cell walls and vacuoles, respectively. Length = 309 |
| >gnl|CDD|176502 cd08559, GDPD_periplasmic_GlpQ_like, Periplasmic glycerophosphodiester phosphodiesterase domain (GlpQ) and similar proteins | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 1e-24
Identities = 84/317 (26%), Positives = 126/317 (39%), Gaps = 44/317 (13%)
Query: 92 PFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNI 151
P V+A G SG P+ + AY+L + A + D+ +TKD + D LD +N+
Sbjct: 1 PLVIAHRGASGYAPEHTLAAYALAIEMGAD--YIEQDLVMTKDGVLVARHDPTLDRTTNV 58
Query: 152 AQIFKTQQKNYLVNGVPTPGWFSIDYTLNDLS----NIILNQGVYSRTDKFDGNGFQILT 207
A+ F + G G+F ID+TL +L NQ R + G F+I T
Sbjct: 59 AEHFPFR-------GRKDTGYFVIDFTLAELKTLRAGSWFNQRYPERAPSYYGG-FKIPT 110
Query: 208 VQD--------MARQIKPPGLWLNIQHDAFYAQHNLSMRSFVLSV--------SRSVVVN 251
+++ + G++ +H F+ Q + +L V V
Sbjct: 111 LEEVIELAQGLNKSTGRNVGIYPETKHPTFHKQEGPDIEEKLLEVLKKYGYTGKNDPV-- 168
Query: 252 YISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLL--KNLTFIKTFASG 309
+I S E L+ + P + LV E TY L L I +A G
Sbjct: 169 FIQSFEPESLKRLRNET-PDI-PLVQLIDYGDWAETDKKYTYAWLTTDAGLKEIAKYADG 226
Query: 310 ILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFAND-IPISFNYSYDPLTEYLS 368
I K I P D + LL T +V DAHK L V F N+ + ++ ++ D Y
Sbjct: 227 IGPWKSLIIPEDSN-GLLVPTDLVKDAHKAGLLVHPYTFRNENLFLAPDFKQDMDALYN- 284
Query: 369 FIDNGDFSVDGVLSDFP 385
VDGV +DFP
Sbjct: 285 -----AAGVDGVFTDFP 296
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in bacterial and eukaryotic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) similar to Escherichia coli periplasmic phosphodiesterase GlpQ. GP-GDEs are involved in glycerol metabolism and catalyze the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. In E. coli, there are two major G3P uptake systems: Glp and Ugp, which contain genes coding for two different GP-GDEs. GlpQ gene from the glp operon codes for a periplasmic phosphodiesterase GlpQ. GlpQ is a dimeric enzyme that hydrolyzes periplasmic glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG), glycerophosphoinositol (GPI), and glycerophosphoserine (GPS), to the corresponding alcohols and G3P, which is subsequently transported into the cell through the GlpT transport system. Ca2+ is required for GlpQ enzymatic activity. This subfamily also includes some GP-GDEs in higher plants and their eukaryotic homologs, which show very high sequence similarities with bacterial periplasmic GP-GDEs. Length = 296 |
| >gnl|CDD|176545 cd08603, GDPD_SHV3_repeat_1, Glycerophosphodiester phosphodiesterase domain repeat 1 of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins | Back alignment and domain information |
|---|
Score = 94.4 bits (235), Expect = 3e-21
Identities = 80/320 (25%), Positives = 146/320 (45%), Gaps = 44/320 (13%)
Query: 409 LVISKNGASGDYPSCTNLAYQKAISDGV-DF-IDCPVQMSKDGVPFCLSFINLINSTNAA 466
LVI++ G SG +P + AYQ A S D + C +Q++KDGV CL +NL NST A
Sbjct: 2 LVIARGGFSGLFPDSSLFAYQFAASSSSPDVALWCDLQLTKDGVGICLPDLNLDNSTTIA 61
Query: 467 QSKFNSITTTIPEIMAGSGIFSFSLIWDEIQ--TLIPQISN--PYFKFKLFRNPKNKNAG 522
+ T ++ G FS E+Q TLI I + P F +
Sbjct: 62 RVYPKRKKTYSVNGVSTKGWFSVDFTLAELQQVTLIQGIFSRTPIFDGQ----------- 110
Query: 523 KFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEALGNAGYNKQTALKV 582
+S ++ A G+ +++++ + + +S+++ ++ +K +
Sbjct: 111 --YPISTVEDVVTLAKP-EGLWLNVQHDAFYQQ-HNLSMSSYLL------SLSKTVKVDY 160
Query: 583 MIQSTDSSVLMKL-----REKTSYELVYKVKENIRDALNQT-------IEDIKKFADSVV 630
I S + L + R T + K+++ + NQT + IK FA ++
Sbjct: 161 -ISSPEVGFLKSIGGRVGRNGTKLVFRFLDKDDVEPSTNQTYGSILKNLTFIKTFASGIL 219
Query: 631 LSKESVYPLNSA-FITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYY 689
+ K ++P++S ++ AT +VQ L VY F+N+F ++++ DP E ++
Sbjct: 220 VPKSYIWPVDSDQYLQPATSLVQDAHKAGLEVYASGFANDFDI-SYNYSYDPVAEYLSFV 278
Query: 690 EGAG--IDGVITEFPMTAAR 707
+DGV+++FP+TA+
Sbjct: 279 GNGNFSVDGVLSDFPITASE 298
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) repeat 1 present in glycerophosphodiester phosphodiesterase (GP-GDE)-like protein SHV3 and SHV3-like proteins (SVLs), which may play an important role in cell wall organization. The prototype of this family is a glycosylphosphatidylinositol (GPI) anchored protein SHV3 encoded by shaven3 (shv3) gene from Arabidopsis thaliana. Members in this family show sequence homology to bacterial GP-GDEs (EC 3.1.4.46) that catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Both, SHV3 and SVLs, have two tandemly repeated GDPD domains whose biochemical functions remain unclear. The residues essential for interactions with the substrates and calcium ions in bacterial GP-GDEs are not conserved in SHV3 and SVLs, which suggests that the function of GDPD domains in these proteins might be distinct from those in typical bacterial GP-GDEs. In addition, the two tandem repeats show low sequence similarity to each other, suggesting they have different biochemical function. Most of the members of this family are Arabidopsis-specific gene products. To date, SHV3 orthologues are only found in Physcomitrella patens. This family includes domain I, the first GDPD domain of SHV3 and SVLs. Length = 299 |
| >gnl|CDD|217317 pfam03009, GDPD, Glycerophosphoryl diester phosphodiesterase family | Back alignment and domain information |
|---|
Score = 89.4 bits (222), Expect = 5e-20
Identities = 66/294 (22%), Positives = 101/294 (34%), Gaps = 66/294 (22%)
Query: 415 GASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSIT 474
GASGDYP T LA++KA G D+I+ VQ++KDGVP + L +T+ A
Sbjct: 3 GASGDYPENTLLAFRKAAEAGADYIEFDVQLTKDGVPVVMHDFTLDRTTDGAG------- 55
Query: 475 TTIPEIMAGSGIFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMA 534
L +E++ L + F R P L + LE
Sbjct: 56 ------------RVKDLTLEELKKLDA-GAGNSPPFSGERVP--------PTLEEVLERW 94
Query: 535 KNANSLSGVLISIENAVYLAEKQGMSVTNSVMEALGNAG---YNKQTALKVMIQSTDSSV 591
++ + I ++V + A K +V+ S +
Sbjct: 95 DVGLNI-EIKIKQTPEA-------IAVEELGIVKDLLASVDEILKVDPRRVIFSSFNPDA 146
Query: 592 LMKLREK-TSYELV--YKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNSAFITSAT 648
L +LRE + LV + D L + A +L S+
Sbjct: 147 LQRLRELAPTLPLVFLTSGRAPALDPLERAAAAAGAPA---LLGGVSLVDEAL------- 196
Query: 649 DIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFP 702
V+R + L V+V T +NE G+DGVIT+ P
Sbjct: 197 VDVKRAHARGLKVHVWTVNNEDD--------------MKRLLKLGVDGVITDRP 236
|
E. coli has two sequence related isozymes of glycerophosphoryl diester phosphodiesterase (GDPD) - periplasmic and cytosolic. This family also includes agrocinopine synthase, the similarity to GDPD has been noted. This family appears to have weak but not significant matches to mammalian phospholipase C pfam00388, which suggests that this family may adopt a TIM barrel fold. Length = 238 |
| >gnl|CDD|176542 cd08600, GDPD_EcGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Escherichia coli (GlpQ) and similar proteins | Back alignment and domain information |
|---|
Score = 81.7 bits (202), Expect = 8e-17
Identities = 73/336 (21%), Positives = 138/336 (41%), Gaps = 62/336 (18%)
Query: 409 LVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQS 468
++I+ GASG P T A A + G D+++ V ++KD + L N TN A+
Sbjct: 2 IIIAHRGASGYLPEHTLEAKALAYAQGADYLEQDVVLTKDDKLVVIHDHYLDNVTNVAE- 60
Query: 469 KFNSITTTIPEIMAGSGIFSFSLI---WDEIQTLIPQISNPYF-----KFKLFRN--PKN 518
KF P+ G + +I DE+++L ++ + K +++ N P
Sbjct: 61 KF-------PDRKRKDG--RYYVIDFTLDELKSL--SVTERFDIENGKKVQVYPNRFPLW 109
Query: 519 KNAGKFMKLSDFLEMAKNANSLSG--VLISIE-NAVYLAEKQGMSVTNSVMEALGNAGYN 575
K+ K L + +E+ + N +G V I E A + ++G + + +E L GY
Sbjct: 110 KSDFKIHTLEEEIELIQGLNKSTGKNVGIYPEIKAPWFHHQEGKDIAAATLEVLKKYGYT 169
Query: 576 KQTALKVMIQSTDSSVLMKLREKTSYELVYKVK-------------ENIRDALNQT---- 618
+ KV +Q+ D + L +++ + ++ +K +
Sbjct: 170 SKND-KVYLQTFDPNELKRIKNELLPKMGMDLKLVQLIAYTDWGETQEKDPGGWVNYDYD 228
Query: 619 -------IEDIKKFADSV-----VLSKESVYPLNSAFITSATDIVQRLQSFKLPVYVETF 666
+++I K+AD V ++ +E N TD+V+ L V+ T
Sbjct: 229 WMFTKGGLKEIAKYADGVGPWYSMIIEEKSSKGNIVL----TDLVKDAHEAGLEVHPYTV 284
Query: 667 SNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFP 702
+ + + + D ++ AG+DGV T+FP
Sbjct: 285 RKDALPE---YAKDADQLLDALLNKAGVDGVFTDFP 317
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli periplasmic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), GlpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two different GP-GDEs. GlpQ gene from the E. coli glp operon codes for a periplasmic phosphodiesterase GlpQ, which is the prototype of this family. GlpQ is a dimeric enzyme that hydrolyzes periplasmic glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG), glycerophosphoinositol (GPI), and glycerophosphoserine (GPS), to the corresponding alcohols and G3P, which is subsequently transported into the cell through the GlpT transport system. Ca2+ is required for the enzymatic activity of GlpQ. This family also includes a surface-exposed lipoprotein, protein D (HPD), from Haemophilus influenza Type b and nontypeable strains, which shows very high sequence similarity with E. coli GlpQ. HPD has been characterized as a human immunoglobulin D-binding protein with glycerophosphodiester phosphodiesterase activity. It can hydrolyze phosphatidylcholine from host membranes to produce free choline on the lipopolysaccharides on the surface of pathogenic bacteria. Length = 318 |
| >gnl|CDD|176546 cd08604, GDPD_SHV3_repeat_2, Glycerophosphodiester phosphodiesterase domain repeat 2 of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins | Back alignment and domain information |
|---|
Score = 79.3 bits (196), Expect = 4e-16
Identities = 70/315 (22%), Positives = 136/315 (43%), Gaps = 38/315 (12%)
Query: 92 PFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNI 151
P +++ G SG +P + +AY + A ++ C VQ++KD C + L N++ +
Sbjct: 1 PLIISHNGASGDYPGCTDLAYQKAVKDGAD--VIDCSVQMSKDGVPFCLDSINLINSTTV 58
Query: 152 AQ-IFKTQQKNYLVNGVPTPGWFSIDYTLNDLSN---IILN---QGVYSRTDKFDGNGFQ 204
A F + G T G F+ D T +++ I N R G +
Sbjct: 59 ATSKFSNRATTVPEIG-STSGIFTFDLTWSEIQTLKPAISNPYSVTGLFRNPANKNAG-K 116
Query: 205 ILTVQD---MARQIKPPGLWLNIQHDAFYAQH-NLSMRSFVL-SVSRSVVVN------YI 253
LT+ D +A+ G+ +N+++ A+ A+ L + VL +++ + N I
Sbjct: 117 FLTLSDFLDLAKNKSLSGVLINVENAAYLAEKKGLDVVDAVLDALTNAGYDNQTAQKVLI 176
Query: 254 SSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTFASGILVP 313
S + + L + + + V+ ++ T S ++ IK FA +++
Sbjct: 177 QSTDSSVLAAFKKQ---ISYERVYV------VDETIRDASDSSIEE---IKKFADAVVID 224
Query: 314 KDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFAND-IPISFNYSYDPLTEYLSFIDN 372
+ ++PV S +L T +V L V+ N+ + ++F++ DP E S++
Sbjct: 225 RGSVFPVSTS-FLTRQTNVVEKLQSANLTVYVEVLRNEFVSLAFDFFADPTVEINSYV-- 281
Query: 373 GDFSVDGVLSDFPLT 387
VDG +++FP T
Sbjct: 282 QGAGVDGFITEFPAT 296
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) repeat 2 present in glycerophosphodiester phosphodiesterase (GP-GDE)-like protein SHV3 and SHV3-like proteins (SVLs), which may play important an role in cell wall organization. The prototype of this family is a glycosylphosphatidylinositol (GPI) anchored protein SHV3 encoded by shaven3 (shv3) gene from Arabidopsis thaliana. Members in this family show sequence homology to bacterial GP-GDEs (EC 3.1.4.46) that catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Both, SHV3 and SVLs, have two tandemly repeated GDPD domains whose biochemical functions remain unclear. The residues essential for interactions with the substrates and calcium ions in bacterial GP-GDEs are not conserved in SHV3 and SVLs, which suggests that the function of GDPD domains in these proteins might be distinct from those in typical bacterial GP-GDEs. In addition, the two tandem repeats show low sequence similarity to each other, suggesting they have different biochemical function. Most of the members of this family are Arabidopsis-specific gene products. To date, SHV3 orthologues are only found in Physcomitrella patens. This CD includes domain II (the second GDPD domain of SHV3 and SVLs), which is necessary for SHV3 function. Length = 300 |
| >gnl|CDD|223657 COG0584, UgpQ, Glycerophosphoryl diester phosphodiesterase [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 64.1 bits (156), Expect = 3e-11
Identities = 62/308 (20%), Positives = 105/308 (34%), Gaps = 73/308 (23%)
Query: 405 SANLLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFC----LSFINLI 460
A L+I+ GASG P T A++ A G D+I+ VQ++KDGV
Sbjct: 3 LAMPLIIAHRGASGYAPENTLAAFELAAEQGADYIELDVQLTKDGVLVVIHDETLDRTTN 62
Query: 461 NSTNAAQSKFNSITTTIPEIMAGSGIFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKN 520
E++ L FR P
Sbjct: 63 GLGTVRDLT-----------------------LAELKRL---------DAGSFRIP---- 86
Query: 521 AGKFMKLSDFL-EMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEALGNAGYNKQTA 579
F + L E+ + G+ I I+ Q + +++ L Y A
Sbjct: 87 --TFGEEIPTLEELLEATGRKIGLYIEIK--SPGFHPQEGKILAALLALL--KRYGGTAA 140
Query: 580 L-KVMIQSTDSSVLMKLREKTS----YELVYKVKENIRDALNQTIEDIKKFADSVVLSKE 634
+V++ S D + L +++ L+ + L + ++++ +AD V
Sbjct: 141 DDRVILSSFDHAALKRIKRLAPDLPLGLLLDATDQYDWMELPRALKEVALYADGVGPDWA 200
Query: 635 SVYPLNSAFITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGI 694
+ L T++V + L V+V T + E I E AG+
Sbjct: 201 MLAEL-------LTELVDDAHAAGLKVHVWTVNEEDD-------------IRLLLE-AGV 239
Query: 695 DGVITEFP 702
DG+IT+FP
Sbjct: 240 DGLITDFP 247
|
Length = 257 |
| >gnl|CDD|236859 PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 1e-09
Identities = 87/364 (23%), Positives = 146/364 (40%), Gaps = 91/364 (25%)
Query: 402 ASKSANLLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLIN 461
A+ SA +VI+ GASG P T A A + G D+++ + M+KD L L
Sbjct: 21 AADSAEKIVIAHRGASGYLPEHTLPAKAMAYAQGADYLEQDLVMTKDDQLVVLHDHYLDR 80
Query: 462 STNAAQSKFNSITTTIPEIMAGSGIF---SFSLIWDEIQTLIPQISNPYFKFKLFRNPKN 518
T+ A+ +F P+ G + F+L DEI++L KF + +N
Sbjct: 81 VTDVAE-RF-------PDRARKDGRYYAIDFTL--DEIKSL---------KFTEGFDIEN 121
Query: 519 KN-----AGKF-MKLSDF--------LEMAKNANSLSGVLISIE---NAVYLAEKQGMSV 561
G+F M SDF +E + N +G I I A + ++G +
Sbjct: 122 GKKVQVYPGRFPMGKSDFRVHTFEEEIEFIQGLNHSTGKNIGIYPEIKAPWFHHQEGKDI 181
Query: 562 TNSVMEALGNAGYNKQTALKVMIQSTDSSVLMKLREKTSYELVYKVKENIRDALNQTI-- 619
V+E L GY + KV +Q D++ L +++ EL K+ +++ L Q I
Sbjct: 182 AAKVLEVLKKYGYTGKDD-KVYLQCFDANELKRIK----NELEPKMGMDLK--LVQLIAY 234
Query: 620 -----------------------------EDIKKFADSV------VLSKESVYPLNSAFI 644
+++ K+AD + ++ + S P N
Sbjct: 235 TDWNETQEKQPDGKWVNYNYDWMFKPGAMKEVAKYADGIGPDYHMLVDETST-PGNIKL- 292
Query: 645 TSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPMT 704
T +V+ KL V+ T + Q ++ +D + Y AG+DGV T+FP
Sbjct: 293 ---TGMVKEAHQAKLVVHPYTVRAD---QLPEYATDVNQLYDILYNQAGVDGVFTDFPDK 346
Query: 705 AARY 708
A ++
Sbjct: 347 AVKF 350
|
Length = 355 |
| >gnl|CDD|176542 cd08600, GDPD_EcGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Escherichia coli (GlpQ) and similar proteins | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 4e-09
Identities = 78/330 (23%), Positives = 131/330 (39%), Gaps = 53/330 (16%)
Query: 94 VVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQ 153
++A G SG P+ + A +L A L DV LTKD+ + D LDN +N+A+
Sbjct: 3 IIAHRGASGYLPEHTLEAKALAYAQGAD--YLEQDVVLTKDDKLVVIHDHYLDNVTNVAE 60
Query: 154 IFKTQQKNYLVNGVPTPGWFSIDYTLNDLSNIILNQGVYSRT--------DKFDGN--GF 203
F +++ ++ ID+TL++L ++ + + ++F F
Sbjct: 61 KFPDRKR-------KDGRYYVIDFTLDELKSLSVTERFDIENGKKVQVYPNRFPLWKSDF 113
Query: 204 QILTVQDMARQI--------KPPGLWLNIQHDAFYAQHNLSMRSFVLSV-------SRSV 248
+I T+++ I K G++ I+ F+ Q + + L V S++
Sbjct: 114 KIHTLEEEIELIQGLNKSTGKNVGIYPEIKAPWFHHQEGKDIAAATLEVLKKYGYTSKND 173
Query: 249 VVNYISSPEVNFLRSIAARFRPSMT---KLVFRFLGKSEIEPT--------TNQTYGSLL 297
V Y+ + + N L+ I P M KLV + + ++ T N Y +
Sbjct: 174 KV-YLQTFDPNELKRIKNELLPKMGMDLKLV-QLIAYTDWGETQEKDPGGWVNYDYDWMF 231
Query: 298 K--NLTFIKTFASGILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPIS 355
L I +A G+ I S + T +V DAH+ LEV D
Sbjct: 232 TKGGLKEIAKYADGVGPWYSMIIEEKSSKGNIVLTDLVKDAHEAGLEVHPYTVRKDALPE 291
Query: 356 FNYSYDPLTEYLSFIDNGDFSVDGVLSDFP 385
+ D L + L VDGV +DFP
Sbjct: 292 YAKDADQLLDALLN----KAGVDGVFTDFP 317
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli periplasmic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), GlpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two different GP-GDEs. GlpQ gene from the E. coli glp operon codes for a periplasmic phosphodiesterase GlpQ, which is the prototype of this family. GlpQ is a dimeric enzyme that hydrolyzes periplasmic glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG), glycerophosphoinositol (GPI), and glycerophosphoserine (GPS), to the corresponding alcohols and G3P, which is subsequently transported into the cell through the GlpT transport system. Ca2+ is required for the enzymatic activity of GlpQ. This family also includes a surface-exposed lipoprotein, protein D (HPD), from Haemophilus influenza Type b and nontypeable strains, which shows very high sequence similarity with E. coli GlpQ. HPD has been characterized as a human immunoglobulin D-binding protein with glycerophosphodiester phosphodiesterase activity. It can hydrolyze phosphatidylcholine from host membranes to produce free choline on the lipopolysaccharides on the surface of pathogenic bacteria. Length = 318 |
| >gnl|CDD|176499 cd08556, GDPD, Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 7e-08
Identities = 18/45 (40%), Positives = 29/45 (64%)
Query: 410 VISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCL 454
+I+ GASG+ P T A++KA+ G D ++ VQ++KDGV +
Sbjct: 1 IIAHRGASGEAPENTLAAFRKALEAGADGVELDVQLTKDGVLVVI 45
|
The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcohols are major sources of carbon and phosphate. Its catalytic mechanism is based on the metal ion-dependent acid-base reaction, which is similar to that of phosphoinositide-specific phospholipases C (PI-PLCs, EC 3.1.4.11). Both, GDPD related proteins and PI-PLCs, belong to the superfamily of PI-PLC-like phosphodiesterases. Length = 189 |
| >gnl|CDD|176543 cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 2e-07
Identities = 62/313 (19%), Positives = 102/313 (32%), Gaps = 83/313 (26%)
Query: 409 LVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQS 468
VI+ GASG P T AY A G D+I+ +QM+KDGV + L +TN +
Sbjct: 2 AVIAHRGASGYAPEHTFAAYDLAREMGADYIELDLQMTKDGVLVAMHDETLDRTTNIER- 60
Query: 469 KFNSITTTIPEIMAGSGIFSFSLIWDEIQTL---------IPQISNPYFKFKLFRNPKNK 519
G EI+ L P+ + +
Sbjct: 61 ---------------PGPVK-DYTLAEIKQLDAGSWFNKAYPEYARESY----------- 93
Query: 520 NAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEA-----LGNAGY 574
+ K L + +E Y+ K ME L G
Sbjct: 94 SGLKVPTLEEVIERYGG-----------RANYYIETKS--PDLYPGMEEKLLATLDKYGL 140
Query: 575 NKQTAL--KVMIQSTDSSVLMKLREKT-SYELVYKVKE-NIRDALNQTIEDIKKFADSVV 630
+V+IQS L KL + + LV + + ++ +++IK++A +
Sbjct: 141 LTDNLKNGQVIIQSFSKESLKKLHQLNPNIPLVQLLWYGEGAETYDKWLDEIKEYAIGI- 199
Query: 631 LSKESVYPLNSAFITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYE 690
S+ + V + L V+ T + + +D IN
Sbjct: 200 --GPSIADADPWM-------VHLIHKKGLLVHPYTVNEK---------ADMIRLIN---- 237
Query: 691 GAGIDGVITEFPM 703
G+DG+ T +P
Sbjct: 238 -WGVDGMFTNYPD 249
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) from Staphylococcus aureus, Bacillus subtilis and similar proteins. Members in this family show very high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Length = 256 |
| >gnl|CDD|176552 cd08610, GDPD_GDE6, Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE6 and similar proteins | Back alignment and domain information |
|---|
Score = 47.6 bits (113), Expect = 1e-05
Identities = 39/140 (27%), Positives = 59/140 (42%), Gaps = 23/140 (16%)
Query: 410 VISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSK 469
+I GA P T ++++KAI G ++ V +S DGVPF + L
Sbjct: 25 IIGHRGAPMLAPENTMMSFEKAIEHGAHGLETDVTLSYDGVPFLMHDFTL---------- 74
Query: 470 FNSITTTIPEIMAGSGIFSFSLI-WDEIQTLIPQISNPYFKFKLFRNPK-----NKNAGK 523
TT I E+ S + + WD + TL + K + F N K +K +
Sbjct: 75 --KRTTNIGEVQPESACENPAFFNWDFLSTL--NAGKWFVKPRPFYNMKPLSEADKERAR 130
Query: 524 ---FMKLSDFLEMAKNANSL 540
KLS+FL +A+ N L
Sbjct: 131 NQSIPKLSNFLRLAEKENKL 150
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE6 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 4 (GDPD4)) and their metazoan homologs. Mammalian GDE6 is a transmembrane protein predominantly expressed in the spermatocytes of testis. Although the specific physiological function of mammalian GDE6 has not been elucidated, its different pattern of tissue distribution suggests it might play a critical role in the completion of meiosis during male germ cell differentiation. Length = 316 |
| >gnl|CDD|176506 cd08563, GDPD_TtGDE_like, Glycerophosphodiester phosphodiesterase domain of Thermoanaerobacter tengcongensis and similar proteins | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 1e-05
Identities = 18/43 (41%), Positives = 25/43 (58%)
Query: 409 LVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVP 451
L+ + G SG P T LA++KAI G D I+ V ++KDG
Sbjct: 2 LIFAHRGYSGTAPENTLLAFKKAIEAGADGIELDVHLTKDGQL 44
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermoanaerobacter tengcongensis glycerophosphodiester phosphodiesterase (TtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Despite the fact that most of GDPD family members exist as the monomer, TtGDE can function as a dimeric unit. Its catalytic mechanism is based on the general base-acid catalysis, which is similar to that of phosphoinositide-specific phospholipases C (PI-PLCs, EC 3.1.4.11). A divalent metal cation is required for the enzyme activity of TtGDE. Length = 230 |
| >gnl|CDD|176512 cd08570, GDPD_YPL206cp_fungi, Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL206cp and similar proteins | Back alignment and domain information |
|---|
Score = 46.4 bits (111), Expect = 2e-05
Identities = 18/41 (43%), Positives = 24/41 (58%)
Query: 410 VISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGV 450
VI G YP T LA++KA+ G D I+ V ++KDGV
Sbjct: 1 VIGHRGYKAKYPENTLLAFEKAVEAGADAIETDVHLTKDGV 41
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Saccharomyces cerevisiae YPL206cp and uncharacterized hypothetical homologs existing in fungi. The product of S. cerevisiae ORF YPL206c (PGC1), YPL206cp (Pgc1p), displays homology to bacterial and mammalian glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. S. cerevisiae YPL206cp is an integral membrane protein with a single GDPD domain following by a short hydrophobic C-terminal tail that may function as a membrane anchor. This protein plays an essential role in the regulation of the cardiolipin (CL) biosynthetic pathway in yeast by removing the excess phosphatidylglycerol (PG) content of membranes via a phospholipase C-type degradation mechanism. YPL206cp has been characterized as a PG-specific phospholipase C that selectively catalyzes the cleavage of PG, not glycerophosphoinositol (GPI) or glycerophosphocholine (GPC), to diacylglycerol (DAG) and glycerophosphate. Members in this family are distantly related to S. cerevisiae YPL110cp, which selectively hydrolyzes glycerophosphocholine (GPC), not glycerophosphoinositol (GPI), to generate choline and glycerolphosphate, and has been characterized as a cytoplasmic GPC-specific phosphodiesterase. Length = 234 |
| >gnl|CDD|176523 cd08581, GDPD_like_1, Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 3e-05
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 415 GASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVP 451
G YP T + ++ A+ G F++ VQ+S DGVP
Sbjct: 6 GYPARYPENTLVGFRAAVDAGARFVEFDVQLSADGVP 42
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity to Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Length = 229 |
| >gnl|CDD|176524 cd08582, GDPD_like_2, Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 9e-05
Identities = 58/299 (19%), Positives = 101/299 (33%), Gaps = 74/299 (24%)
Query: 410 VISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSK 469
VI+ GAS + P T A++ A G D I+ V+++KDG C+ L ++
Sbjct: 1 VIAHRGASAEAPENTLAAFELAWEQGADGIETDVRLTKDGELVCVHDPTLKRTSG----- 55
Query: 470 FNSITTTIPEIMAGSGIFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSD 529
G G S L E++ L ++ K K L +
Sbjct: 56 -------------GDGAVS-DLTLAELRKL---------DIGSWKGESYKGE-KVPTLEE 91
Query: 530 FLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEALGNAGYN-KQTALKVMIQSTD 588
+L + + I I++ G +++ L +G +Q ++I S D
Sbjct: 92 YLAIVPKYG--KKLFIEIKHPRR-----GPEAEEELLKLLKESGLLPEQ----IVIISFD 140
Query: 589 SSVLMKLRE-----KTSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNSAF 643
+ L ++RE +T + YK + ++ + L LN AF
Sbjct: 141 AEALKRVRELAPTLETLWLRNYK---SPKEDPRPLAKSGGAAG----LDLSYEKKLNPAF 193
Query: 644 ITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFP 702
I + L+ L + V T + A G+D + T P
Sbjct: 194 I-------KALRDAGLKLNVWTVDDA--EDAKRLI------------ELGVDSITTNRP 231
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity to Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Length = 233 |
| >gnl|CDD|176522 cd08580, GDPD_Rv2277c_like, Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial protein Rv2277c and similar proteins | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 3e-04
Identities = 20/43 (46%), Positives = 28/43 (65%)
Query: 409 LVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVP 451
L+++ G + D P T LA KA+++G D I VQ+SKDGVP
Sbjct: 2 LIVAHRGGTADAPENTLLAISKALANGADAIWLTVQLSKDGVP 44
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial protein Rv2277c and similar proteins. Members in this subfamily are bacterial homologous of mammalian GDE4, a transmembrane protein whose cellular function has not yet been elucidated. Length = 263 |
| >gnl|CDD|176516 cd08574, GDPD_GDE_2_3_6, Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2, GDE3, GDE6-like proteins | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 3e-04
Identities = 31/131 (23%), Positives = 52/131 (39%), Gaps = 27/131 (20%)
Query: 421 PSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEI 480
P T ++++KA+ GV ++ V +S DGVPF + L +TN A F
Sbjct: 15 PENTLMSFEKALEHGVYGLETDVTISYDGVPFLMHDRTLRRTTNVA-DVFPERAHE---- 69
Query: 481 MAGSGIFSFSLIWDEIQTLIPQISN---------PYFKFKLFRNPKNKNAG--KFMKLSD 529
+ +F+ W ++Q L N P++ + AG L++
Sbjct: 70 --RASMFT----WTDLQQL-----NAGQWFLKDDPFWTASSLSESDREEAGNQSIPSLAE 118
Query: 530 FLEMAKNANSL 540
L +AK N
Sbjct: 119 LLRLAKKHNKS 129
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian glycerophosphodiester phosphodiesterase domain-containing protein subtype 5 (GDE2), subtype 2 (GDE3), subtype 1 (GDE6), and their eukaryotic homologs. Mammalian GDE2, GDE3, and GDE6 show very high sequence similarity to each other and have been classified into the same family. Although they are all transmembrane proteins, based on different pattern of tissue distribution, these enzymes might display diverse cellular functions. Mammalian GDE2 is primarily expressed in mature neurons. It selectively hydrolyzes glycerophosphocholine (GPC) and mainly functions in a complex with an antioxidant scavenger peroxiredoxin1 (Prdx1) to control motor neuron differentiation in the spinal cord. Mammalian GDE3 is specifically expressed in bone tissues and spleen. It selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate inositol 1-phosphate (Ins1P) and glycerol and functions as an inducer of osteoblast differentiation. Mammalian GDE6 is predominantly expressed in the spermatocytes of testis, and its specific physiological function has not been elucidated yet. Length = 252 |
| >gnl|CDD|176509 cd08566, GDPD_AtGDE_like, Glycerophosphodiester phosphodiesterase domain of Agrobacterium tumefaciens and similar proteins | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.001
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 409 LVISKNGASGD-YPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPF 452
LV++ G G P + A + AI G D ++ V+ +KDGV
Sbjct: 1 LVVAHRGGWGAGAPENSLAAIEAAIDLGADIVEIDVRRTKDGVLV 45
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase (AtGDE, EC 3.1.4.46) and its uncharacterized eukaryotic homolgoues. Members in this family shows high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. AtGDE exists as a hexamer that is a trimer of dimers, which is unique among current known GDPD family members. However, it remains unclear if the hexamer plays a physiological role in AtGDE enzymatic function. Length = 240 |
| >gnl|CDD|176505 cd08562, GDPD_EcUgpQ_like, Glycerophosphodiester phosphodiesterase domain in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase UgpQ and similar proteins | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.002
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 410 VISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCL 454
+I+ GAS P T A++ A GV +++ V++S DG +
Sbjct: 1 IIAHRGASSLAPENTLAAFRAAAELGVRWVEFDVKLSGDGTLVLI 45
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), UgpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two distinct GP-GDEs. UgpQ gene from the E. coli ugp operon codes for a cytosolic phosphodiesterase GlpQ, which is the prototype of this family. Various glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG), glycerophosphoinositol (GPI), and glycerophosphoserine (GPS), can only be hydrolyzed by UgpQ during transport at the inner side of the cytoplasmic membrane to alcohols and G3P, which is a source of phosphate. In contrast to Ca2+-dependent periplasmic phosphodiesterase GlpQ, cytosolic phosphodiesterase UgpQ requires divalent cations, such as Mg2+, Co2+, or Mn2+, for its enzyme activity. Length = 229 |
| >gnl|CDD|176517 cd08575, GDPD_GDE4_like, Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4-like proteins | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.002
Identities = 14/43 (32%), Positives = 26/43 (60%)
Query: 409 LVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVP 451
L I+ G + ++P T A++ A+ +G D ++ VQ++KDG
Sbjct: 2 LHIAHRGGAAEFPENTIAAFRHAVKNGADMLELDVQLTKDGQV 44
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function is not elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests mammalian GDE4 may play some distinct role from other members of mammalian GDEs family. Also included in this subfamily are uncharacterized mammalian glycerophosphodiester phosphodiesterase domain-containing protein 3 (GDPD3) and similar proteins which display very high sequence homology to mammalian GDE4. Length = 264 |
| >gnl|CDD|176551 cd08609, GDPD_GDE3, Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE3 and similar proteins | Back alignment and domain information |
|---|
Score = 40.7 bits (95), Expect = 0.002
Identities = 36/136 (26%), Positives = 58/136 (42%), Gaps = 19/136 (13%)
Query: 410 VISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSK 469
++ GA P T ++ +K++ GV + V +SKDGVPF + L+ +TN +
Sbjct: 29 LVGHRGAPMLAPENTLMSLRKSLECGVVVFETDVMVSKDGVPFLMHDEGLLRTTN-VKDV 87
Query: 470 FNSITTTIPE-IMAGSGIFSFSLIWDEIQTLIPQI----SNPYFKFKLFRNPKNKNAG-- 522
F P AGS F+ W E++TL P++ + A
Sbjct: 88 F-------PGRDAAGSNNFT----WTELKTLNAGSWFLERRPFWTLSSLSEEDRREADNQ 136
Query: 523 KFMKLSDFLEMAKNAN 538
LS+ L++AK N
Sbjct: 137 TVPSLSELLDLAKKHN 152
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE3 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 2 (GDPD2), Osteoblast differentiation promoting factor) and their metazoan homologs. Mammalian GDE3 is a transmembrane protein specifically expressed in bone tissues and spleen. It is a mammalian homolog of bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Mammalian GDE3 has been characterized as glycerophosphoinositol inositolphosphodiesterase (EC 3.1.4.43) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate inositol 1-phosphate (Ins1P) and glycerol. Mammalian GDE3 functions as an inducer of osteoblast differentiation. It also plays a critical role for actin cytoskeletal modulation. The catalytic activity of GDPD domain is essential for mammalian GDE3 cellular function. Length = 315 |
| >gnl|CDD|223657 COG0584, UgpQ, Glycerophosphoryl diester phosphodiesterase [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 0.003
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 87 LTGDPPFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLD 146
T P ++A G SG P+++ A+ L A + DVQLTKD + D LD
Sbjct: 1 ATLAMPLIIAHRGASGYAPENTLAAFELAAEQGAD--YIELDVQLTKDGVLVVIHDETLD 58
Query: 147 NASN 150
+N
Sbjct: 59 RTTN 62
|
Length = 257 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 733 | |||
| cd08603 | 299 | GDPD_SHV3_repeat_1 Glycerophosphodiester phosphodi | 100.0 | |
| cd08604 | 300 | GDPD_SHV3_repeat_2 Glycerophosphodiester phosphodi | 100.0 | |
| cd08603 | 299 | GDPD_SHV3_repeat_1 Glycerophosphodiester phosphodi | 100.0 | |
| cd08571 | 302 | GDPD_SHV3_plant Glycerophosphodiester phosphodiest | 100.0 | |
| cd08571 | 302 | GDPD_SHV3_plant Glycerophosphodiester phosphodiest | 100.0 | |
| cd08602 | 309 | GDPD_ScGlpQ1_like Glycerophosphodiester phosphodie | 100.0 | |
| cd08560 | 356 | GDPD_EcGlpQ_like_1 Glycerophosphodiester phosphodi | 100.0 | |
| PRK11143 | 355 | glpQ glycerophosphodiester phosphodiesterase; Prov | 100.0 | |
| cd08602 | 309 | GDPD_ScGlpQ1_like Glycerophosphodiester phosphodie | 100.0 | |
| cd08604 | 300 | GDPD_SHV3_repeat_2 Glycerophosphodiester phosphodi | 100.0 | |
| cd08600 | 318 | GDPD_EcGlpQ_like Glycerophosphodiester phosphodies | 100.0 | |
| cd08580 | 263 | GDPD_Rv2277c_like Glycerophosphodiester phosphodie | 100.0 | |
| cd08560 | 356 | GDPD_EcGlpQ_like_1 Glycerophosphodiester phosphodi | 100.0 | |
| cd08559 | 296 | GDPD_periplasmic_GlpQ_like Periplasmic glycerophos | 100.0 | |
| cd08559 | 296 | GDPD_periplasmic_GlpQ_like Periplasmic glycerophos | 100.0 | |
| cd08600 | 318 | GDPD_EcGlpQ_like Glycerophosphodiester phosphodies | 100.0 | |
| cd08610 | 316 | GDPD_GDE6 Glycerophosphodiester phosphodiesterase | 100.0 | |
| PRK11143 | 355 | glpQ glycerophosphodiester phosphodiesterase; Prov | 100.0 | |
| cd08580 | 263 | GDPD_Rv2277c_like Glycerophosphodiester phosphodie | 100.0 | |
| cd08612 | 300 | GDPD_GDE4 Glycerophosphodiester phosphodiesterase | 100.0 | |
| cd08601 | 256 | GDPD_SaGlpQ_like Glycerophosphodiester phosphodies | 100.0 | |
| cd08574 | 252 | GDPD_GDE_2_3_6 Glycerophosphodiester phosphodieste | 100.0 | |
| cd08601 | 256 | GDPD_SaGlpQ_like Glycerophosphodiester phosphodies | 100.0 | |
| cd08608 | 351 | GDPD_GDE2 Glycerophosphodiester phosphodiesterase | 100.0 | |
| cd08609 | 315 | GDPD_GDE3 Glycerophosphodiester phosphodiesterase | 100.0 | |
| PRK09454 | 249 | ugpQ cytoplasmic glycerophosphodiester phosphodies | 100.0 | |
| cd08581 | 229 | GDPD_like_1 Glycerophosphodiester phosphodiesteras | 100.0 | |
| PRK09454 | 249 | ugpQ cytoplasmic glycerophosphodiester phosphodies | 100.0 | |
| cd08612 | 300 | GDPD_GDE4 Glycerophosphodiester phosphodiesterase | 100.0 | |
| cd08581 | 229 | GDPD_like_1 Glycerophosphodiester phosphodiesteras | 100.0 | |
| cd08565 | 235 | GDPD_pAtGDE_like Glycerophosphodiester phosphodies | 100.0 | |
| cd08568 | 226 | GDPD_TmGDE_like Glycerophosphodiester phosphodiest | 100.0 | |
| cd08565 | 235 | GDPD_pAtGDE_like Glycerophosphodiester phosphodies | 100.0 | |
| cd08562 | 229 | GDPD_EcUgpQ_like Glycerophosphodiester phosphodies | 100.0 | |
| cd08575 | 264 | GDPD_GDE4_like Glycerophosphodiester phosphodieste | 100.0 | |
| cd08610 | 316 | GDPD_GDE6 Glycerophosphodiester phosphodiesterase | 100.0 | |
| cd08574 | 252 | GDPD_GDE_2_3_6 Glycerophosphodiester phosphodieste | 100.0 | |
| cd08564 | 265 | GDPD_GsGDE_like Glycerophosphodiester phosphodiest | 100.0 | |
| cd08563 | 230 | GDPD_TtGDE_like Glycerophosphodiester phosphodiest | 100.0 | |
| cd08568 | 226 | GDPD_TmGDE_like Glycerophosphodiester phosphodiest | 100.0 | |
| cd08579 | 220 | GDPD_memb_like Glycerophosphodiester phosphodieste | 100.0 | |
| cd08608 | 351 | GDPD_GDE2 Glycerophosphodiester phosphodiesterase | 100.0 | |
| cd08575 | 264 | GDPD_GDE4_like Glycerophosphodiester phosphodieste | 100.0 | |
| cd08609 | 315 | GDPD_GDE3 Glycerophosphodiester phosphodiesterase | 100.0 | |
| cd08562 | 229 | GDPD_EcUgpQ_like Glycerophosphodiester phosphodies | 100.0 | |
| cd08582 | 233 | GDPD_like_2 Glycerophosphodiester phosphodiesteras | 100.0 | |
| cd08606 | 286 | GDPD_YPL110cp_fungi Glycerophosphodiester phosphod | 100.0 | |
| cd08582 | 233 | GDPD_like_2 Glycerophosphodiester phosphodiesteras | 100.0 | |
| cd08564 | 265 | GDPD_GsGDE_like Glycerophosphodiester phosphodiest | 100.0 | |
| cd08573 | 258 | GDPD_GDE1 Glycerophosphodiester phosphodiesterase | 100.0 | |
| cd08573 | 258 | GDPD_GDE1 Glycerophosphodiester phosphodiesterase | 100.0 | |
| cd08563 | 230 | GDPD_TtGDE_like Glycerophosphodiester phosphodiest | 100.0 | |
| cd08579 | 220 | GDPD_memb_like Glycerophosphodiester phosphodieste | 100.0 | |
| cd08607 | 290 | GDPD_GDE5 Glycerophosphodiester phosphodiesterase | 100.0 | |
| cd08570 | 234 | GDPD_YPL206cp_fungi Glycerophosphodiester phosphod | 100.0 | |
| cd08561 | 249 | GDPD_cytoplasmic_ScUgpQ2_like Glycerophosphodieste | 100.0 | |
| cd08605 | 282 | GDPD_GDE5_like_1_plant Glycerophosphodiester phosp | 100.0 | |
| cd08567 | 263 | GDPD_SpGDE_like Glycerophosphodiester phosphodiest | 100.0 | |
| cd08607 | 290 | GDPD_GDE5 Glycerophosphodiester phosphodiesterase | 100.0 | |
| cd08572 | 293 | GDPD_GDE5_like Glycerophosphodiester phosphodieste | 100.0 | |
| cd08572 | 293 | GDPD_GDE5_like Glycerophosphodiester phosphodieste | 100.0 | |
| cd08570 | 234 | GDPD_YPL206cp_fungi Glycerophosphodiester phosphod | 100.0 | |
| cd08606 | 286 | GDPD_YPL110cp_fungi Glycerophosphodiester phosphod | 100.0 | |
| cd08561 | 249 | GDPD_cytoplasmic_ScUgpQ2_like Glycerophosphodieste | 100.0 | |
| cd08566 | 240 | GDPD_AtGDE_like Glycerophosphodiester phosphodiest | 100.0 | |
| cd08567 | 263 | GDPD_SpGDE_like Glycerophosphodiester phosphodiest | 100.0 | |
| cd08566 | 240 | GDPD_AtGDE_like Glycerophosphodiester phosphodiest | 100.0 | |
| cd08605 | 282 | GDPD_GDE5_like_1_plant Glycerophosphodiester phosp | 100.0 | |
| cd08613 | 309 | GDPD_GDE4_like_1 Glycerophosphodiester phosphodies | 100.0 | |
| cd08585 | 237 | GDPD_like_3 Glycerophosphodiester phosphodiesteras | 100.0 | |
| cd08585 | 237 | GDPD_like_3 Glycerophosphodiester phosphodiesteras | 100.0 | |
| cd08583 | 237 | PI-PLCc_GDPD_SF_unchar1 Uncharacterized hypothetic | 100.0 | |
| cd08583 | 237 | PI-PLCc_GDPD_SF_unchar1 Uncharacterized hypothetic | 100.0 | |
| COG0584 | 257 | UgpQ Glycerophosphoryl diester phosphodiesterase [ | 100.0 | |
| COG0584 | 257 | UgpQ Glycerophosphoryl diester phosphodiesterase [ | 100.0 | |
| cd08613 | 309 | GDPD_GDE4_like_1 Glycerophosphodiester phosphodies | 100.0 | |
| PF03009 | 256 | GDPD: Glycerophosphoryl diester phosphodiesterase | 100.0 | |
| PF03009 | 256 | GDPD: Glycerophosphoryl diester phosphodiesterase | 100.0 | |
| cd08556 | 189 | GDPD Glycerophosphodiester phosphodiesterase domai | 100.0 | |
| cd08556 | 189 | GDPD Glycerophosphodiester phosphodiesterase domai | 99.98 | |
| cd08555 | 179 | PI-PLCc_GDPD_SF Catalytic domain of phosphoinositi | 99.97 | |
| cd08555 | 179 | PI-PLCc_GDPD_SF Catalytic domain of phosphoinositi | 99.97 | |
| KOG2258 | 341 | consensus Glycerophosphoryl diester phosphodiester | 99.94 | |
| cd08578 | 300 | GDPD_NUC-2_fungi Putative glycerophosphodiester ph | 99.94 | |
| cd08578 | 300 | GDPD_NUC-2_fungi Putative glycerophosphodiester ph | 99.9 | |
| cd08584 | 192 | PI-PLCc_GDPD_SF_unchar2 Uncharacterized hypothetic | 99.87 | |
| cd08584 | 192 | PI-PLCc_GDPD_SF_unchar2 Uncharacterized hypothetic | 99.85 | |
| KOG2258 | 341 | consensus Glycerophosphoryl diester phosphodiester | 99.85 | |
| cd08577 | 228 | PI-PLCc_GDPD_SF_unchar3 Uncharacterized hypothetic | 99.35 | |
| cd08576 | 265 | GDPD_like_SMaseD_PLD Glycerophosphodiester phospho | 99.32 | |
| cd08577 | 228 | PI-PLCc_GDPD_SF_unchar3 Uncharacterized hypothetic | 99.29 | |
| cd08576 | 265 | GDPD_like_SMaseD_PLD Glycerophosphodiester phospho | 99.14 | |
| PF13653 | 30 | GDPD_2: Glycerophosphoryl diester phosphodiesteras | 98.33 | |
| PF13653 | 30 | GDPD_2: Glycerophosphoryl diester phosphodiesteras | 98.31 | |
| cd08592 | 229 | PI-PLCc_gamma Catalytic domain of metazoan phospho | 98.31 | |
| cd08592 | 229 | PI-PLCc_gamma Catalytic domain of metazoan phospho | 98.24 | |
| cd08627 | 229 | PI-PLCc_gamma1 Catalytic domain of metazoan phosph | 97.97 | |
| cd08627 | 229 | PI-PLCc_gamma1 Catalytic domain of metazoan phosph | 97.9 | |
| KOG2421 | 417 | consensus Predicted starch-binding protein [Genera | 97.74 | |
| smart00148 | 135 | PLCXc Phospholipase C, catalytic domain (part); do | 97.39 | |
| KOG2421 | 417 | consensus Predicted starch-binding protein [Genera | 97.37 | |
| cd08597 | 260 | PI-PLCc_PRIP_metazoa Catalytic domain of metazoan | 97.25 | |
| cd08597 | 260 | PI-PLCc_PRIP_metazoa Catalytic domain of metazoan | 97.11 | |
| smart00148 | 135 | PLCXc Phospholipase C, catalytic domain (part); do | 96.73 | |
| cd08633 | 254 | PI-PLCc_eta2 Catalytic domain of metazoan phosphoi | 95.75 | |
| cd08596 | 254 | PI-PLCc_epsilon Catalytic domain of metazoan phosp | 95.58 | |
| cd08594 | 227 | PI-PLCc_eta Catalytic domain of metazoan phosphoin | 95.55 | |
| cd08631 | 258 | PI-PLCc_delta4 Catalytic domain of metazoan phosph | 95.54 | |
| PF10223 | 244 | DUF2181: Uncharacterized conserved protein (DUF218 | 95.33 | |
| cd08626 | 257 | PI-PLCc_beta4 Catalytic domain of metazoan phospho | 95.23 | |
| cd08633 | 254 | PI-PLCc_eta2 Catalytic domain of metazoan phosphoi | 95.22 | |
| cd08593 | 257 | PI-PLCc_delta Catalytic domain of metazoan phospho | 95.17 | |
| cd08558 | 226 | PI-PLCc_eukaryota Catalytic domain of eukaryotic p | 95.14 | |
| cd08599 | 228 | PI-PLCc_plant Catalytic domain of plant phosphatid | 95.07 | |
| cd08632 | 253 | PI-PLCc_eta1 Catalytic domain of metazoan phosphoi | 95.04 | |
| cd08595 | 257 | PI-PLCc_zeta Catalytic domain of metazoan phosphoi | 95.0 | |
| cd08596 | 254 | PI-PLCc_epsilon Catalytic domain of metazoan phosp | 94.99 | |
| cd08594 | 227 | PI-PLCc_eta Catalytic domain of metazoan phosphoin | 94.98 | |
| PF10223 | 244 | DUF2181: Uncharacterized conserved protein (DUF218 | 94.98 | |
| cd08631 | 258 | PI-PLCc_delta4 Catalytic domain of metazoan phosph | 94.96 | |
| cd08630 | 258 | PI-PLCc_delta3 Catalytic domain of metazoan phosph | 94.9 | |
| cd08623 | 258 | PI-PLCc_beta1 Catalytic domain of metazoan phospho | 94.89 | |
| cd08629 | 258 | PI-PLCc_delta1 Catalytic domain of metazoan phosph | 94.74 | |
| cd08628 | 254 | PI-PLCc_gamma2 Catalytic domain of metazoan phosph | 94.71 | |
| cd08598 | 231 | PI-PLC1c_yeast Catalytic domain of putative yeast | 94.64 | |
| cd08593 | 257 | PI-PLCc_delta Catalytic domain of metazoan phospho | 94.62 | |
| cd08591 | 257 | PI-PLCc_beta Catalytic domain of metazoan phosphoi | 94.52 | |
| cd08626 | 257 | PI-PLCc_beta4 Catalytic domain of metazoan phospho | 94.45 | |
| cd08599 | 228 | PI-PLCc_plant Catalytic domain of plant phosphatid | 94.33 | |
| cd08558 | 226 | PI-PLCc_eukaryota Catalytic domain of eukaryotic p | 94.33 | |
| cd08632 | 253 | PI-PLCc_eta1 Catalytic domain of metazoan phosphoi | 94.27 | |
| cd08595 | 257 | PI-PLCc_zeta Catalytic domain of metazoan phosphoi | 94.25 | |
| cd08623 | 258 | PI-PLCc_beta1 Catalytic domain of metazoan phospho | 94.07 | |
| cd08630 | 258 | PI-PLCc_delta3 Catalytic domain of metazoan phosph | 94.04 | |
| cd08624 | 261 | PI-PLCc_beta2 Catalytic domain of metazoan phospho | 94.03 | |
| cd08628 | 254 | PI-PLCc_gamma2 Catalytic domain of metazoan phosph | 93.91 | |
| cd08629 | 258 | PI-PLCc_delta1 Catalytic domain of metazoan phosph | 93.84 | |
| cd08598 | 231 | PI-PLC1c_yeast Catalytic domain of putative yeast | 93.7 | |
| cd08591 | 257 | PI-PLCc_beta Catalytic domain of metazoan phosphoi | 93.68 | |
| cd08625 | 258 | PI-PLCc_beta3 Catalytic domain of metazoan phospho | 93.27 | |
| KOG1264 | 1267 | consensus Phospholipase C [Lipid transport and met | 93.09 | |
| cd08624 | 261 | PI-PLCc_beta2 Catalytic domain of metazoan phospho | 92.95 | |
| cd08625 | 258 | PI-PLCc_beta3 Catalytic domain of metazoan phospho | 91.75 | |
| PLN02230 | 598 | phosphoinositide phospholipase C 4 | 89.05 | |
| KOG1264 | 1267 | consensus Phospholipase C [Lipid transport and met | 88.38 | |
| PLN02228 | 567 | Phosphoinositide phospholipase C | 86.52 | |
| KOG0169 | 746 | consensus Phosphoinositide-specific phospholipase | 85.86 | |
| PLN02230 | 598 | phosphoinositide phospholipase C 4 | 85.78 | |
| PLN02222 | 581 | phosphoinositide phospholipase C 2 | 84.66 | |
| PLN02952 | 599 | phosphoinositide phospholipase C | 84.15 | |
| KOG0169 | 746 | consensus Phosphoinositide-specific phospholipase | 82.44 | |
| PLN02228 | 567 | Phosphoinositide phospholipase C | 82.25 | |
| PLN02591 | 250 | tryptophan synthase | 81.62 | |
| PF04309 | 175 | G3P_antiterm: Glycerol-3-phosphate responsive anti | 80.95 | |
| PLN02222 | 581 | phosphoinositide phospholipase C 2 | 80.14 |
| >cd08603 GDPD_SHV3_repeat_1 Glycerophosphodiester phosphodiesterase domain repeat 1 of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-59 Score=484.28 Aligned_cols=298 Identities=64% Similarity=1.113 Sum_probs=267.8
Q ss_pred CEEEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCCccccCccccccccccccccCCCCCCc
Q 004721 92 PFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPG 171 (733)
Q Consensus 92 ~~viaHRG~~~~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l~rtt~~~~~~~~~~~~~~~~g~~~~g 171 (733)
|+||||||++|.+||||++||+.|++.|+++.+||||||+||||++||+||.+|+|+||+.+.|++|++++.+||...+|
T Consensus 1 plVIAHRGasg~~PEnTl~Ay~~Ai~~Ga~~d~IE~DV~lTkDgvlVv~HD~~L~rtT~v~~~F~~r~~t~~idG~~~~g 80 (299)
T cd08603 1 PLVIARGGFSGLFPDSSLFAYQFAASSSSPDVALWCDLQLTKDGVGICLPDLNLDNSTTIARVYPKRKKTYSVNGVSTKG 80 (299)
T ss_pred CeEEecCCCCCCCCcchHHHHHHHHHcCCCCCEEEEEeeECcCCcEEEeCCccccccCCCccccccccccccccccccCC
Confidence 68999999999999999999999999999411899999999999999999999999999999999999999999999999
Q ss_pred cccccCCHHhhccccccccccCCCCCCCCCCcccccHHHHHHhhCCCceEeeccCchhhhhcCCcHHHHHHHHHhhcCCc
Q 004721 172 WFSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKPPGLWLNIQHDAFYAQHNLSMRSFVLSVSRSVVVN 251 (733)
Q Consensus 172 ~~v~d~T~~eL~~l~~~~~~~~~~~~~~g~~~~iptL~e~l~~~~~~~l~iEiK~~~~~~~~~~~~~~~v~~~l~~~~~~ 251 (733)
|++.||||+||++|++.+++..+++.|+| .++||||+|+|++++..++++|||.+.++...|.++++.|+++|+++|.+
T Consensus 81 ~~~~d~TlaELk~L~~~~~~~~r~~~~~g-~~~IpTLeEvl~~~~~~gi~i~ie~~~~~~~~gl~~~~~l~~~L~~~~~v 159 (299)
T cd08603 81 WFSVDFTLAELQQVTLIQGIFSRTPIFDG-QYPISTVEDVVTLAKPEGLWLNVQHDAFYQQHNLSMSSYLLSLSKTVKVD 159 (299)
T ss_pred ceeccCCHHHHhhCCCCCCcccCCcccCC-cCCCCCHHHHHHHhHhcCeEEEEecHHHHHHcCCCHHHHHHHHHHHcCcE
Confidence 99999999999999998766667788888 45999999999999888999999999999889999999999999999999
Q ss_pred eeccCCHHHHHHHHHhcCCCcccchhhhcCCCccCCCCCcchhHHHhhHHHHHhhcccccCCccccccCCCccCCCCChH
Q 004721 252 YISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTFASGILVPKDYIWPVDESLYLLPHTT 331 (733)
Q Consensus 252 ~i~SF~~~~l~~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~i~~~~~~i~~~~~~~~~~~~~~ 331 (733)
+||||+...|+++++.....+.++++.+++.+...+.++..|+++.++|++|++||++++|++.++++.+.++.+..+..
T Consensus 160 ~iQSfe~~~L~~l~~~~~~~~~~Lv~~l~~~~~~~~~~~~~y~~~~~~L~eIa~yAdgig~~k~~i~p~~~~~~~~~~t~ 239 (299)
T cd08603 160 YISSPEVGFLKSIGGRVGRNGTKLVFRFLDKDDVEPSTNQTYGSILKNLTFIKTFASGILVPKSYIWPVDSDQYLQPATS 239 (299)
T ss_pred EEECCCHHHHHHHHHhcccCCCCeeeEeccCCCcCCCCCccHHHHHHhHHHHHHHHhhcCCChhheeecCCCCcccCccH
Confidence 99999999999999863100467876455555555566789999999999999999999999999999877777777789
Q ss_pred HHHHHHHcCCeEEEeecCCCCCcccCCCCChHHHHHHHHhcCCcccceEEecCCCCccc
Q 004721 332 IVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPSA 390 (733)
Q Consensus 332 ~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~~~~~l~~~G~~~VDgIiTD~P~~~~~ 390 (733)
+|++||++||+||+||+++|...++++..|+..|+..+++.|+++|||||||+|+++.+
T Consensus 240 lV~~Ah~agL~Vh~~tfr~e~~~~~~~~~d~~~e~~~~~~~g~~~vDGvfTDfP~~a~~ 298 (299)
T cd08603 240 LVQDAHKAGLEVYASGFANDFDISYNYSYDPVAEYLSFVGNGNFSVDGVLSDFPITASE 298 (299)
T ss_pred HHHHHHHcCCeEEEEEeeCCCCccccccCCHHHHHHHHHhcCCCCCCEEEecCchhhcc
Confidence 99999999999999999999668888888999999999987767799999999998764
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) repeat 1 present in glycerophosphodiester phosphodiesterase (GP-GDE)-like protein SHV3 and SHV3-like proteins (SVLs), which may play an important role in cell wall organization. The prototype of this family is a glycosylphosphatidylinositol (GPI) anchored protein SHV3 encoded by shaven3 (shv3) gene from Arabidopsis thaliana. Members in this family show sequence homology to bacterial GP-GDEs (EC 3.1.4.46) that catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Both, SHV3 and SVLs, have two tandemly repeated GDPD domains whose biochemical functions remain unclear. The residues essential for interactions with the substrates and calcium ions in bacterial GP |
| >cd08604 GDPD_SHV3_repeat_2 Glycerophosphodiester phosphodiesterase domain repeat 2 of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-51 Score=433.79 Aligned_cols=300 Identities=65% Similarity=1.028 Sum_probs=241.9
Q ss_pred ceEEecCCCCCCCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeeccccccccccCCCcCCCcccccccccccCccc
Q 004721 408 LLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIF 487 (733)
Q Consensus 408 ~~iIaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L~rtt~v~~~~~~~r~~~~~~~~~~~g~~ 487 (733)
|+||||||+++.+||||++||++|+++|||+||||||+||||++||+||.+|+|+||++...|++|+++.++..+.+|++
T Consensus 1 p~iiaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDG~lVv~HD~~l~rtt~~~~~~~~~~~~~~~~~~~~~~~~ 80 (300)
T cd08604 1 PLIISHNGASGDYPGCTDLAYQKAVKDGADVIDCSVQMSKDGVPFCLDSINLINSTTVATSKFSNRATTVPEIGSTSGIF 80 (300)
T ss_pred CeEEecCCcCCCCCcchHHHHHHHHHcCCCEEEEeeeEcCCCCEEEeccccccCcccCCcccccccccccccccccCcee
Confidence 57999999999999999999999999999999999999999999999999999999987756888887766655567777
Q ss_pred ccccCHHHHhccCccccCCCccccccCCcCCCCCccccCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCCcHHHHHHH
Q 004721 488 SFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVME 567 (733)
Q Consensus 488 i~d~T~~EL~~L~~~~~~~~~~~~~~~~~~~~g~~~IptLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~v~~ 567 (733)
+.++|++||++|+++..+.+...+.++.+.+.++++||||+|+|++++.... ++++||||.+....+..+..+++++++
T Consensus 81 v~d~t~~eL~~l~~~~~~~~~~~~~~~~~~~~~~~~iptL~Evl~~~~~~~~-~~l~iEiK~~~~~~~~~~~~~~~~v~~ 159 (300)
T cd08604 81 TFDLTWSEIQTLKPAISNPYSVTGLFRNPANKNAGKFLTLSDFLDLAKNKSL-SGVLINVENAAYLAEKKGLDVVDAVLD 159 (300)
T ss_pred eecCcHHHHhhCccCCcCcccccCcCCCcccCCCCCCCCHHHHHHHHHhcCC-ceEEEEeeccchhhhccCccHHHHHHH
Confidence 9999999999999875433333334555667666899999999999987622 379999997654321123468999999
Q ss_pred HHHHcCCCCCCCceEEEEeCCHHHHHHHHhccCceEEEEeecccchhhhHHHHHHHHHHhHhcCCCcccccCCccccccc
Q 004721 568 ALGNAGYNKQTALKVMIQSTDSSVLMKLREKTSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNSAFITSA 647 (733)
Q Consensus 568 ~l~~~~~~~~~~~~vii~Sfd~~~L~~lk~~p~~~~~~l~~~~~~~~~~~~l~~i~~~a~~i~~~~~~i~~~~~~~l~~~ 647 (733)
+++++++.....++|+|+||++++|+.+++..++++++++.....+.....+..+..+|++++++...+.+....++..+
T Consensus 160 ~l~~~~~~~~~~~~v~i~SF~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~v~~~~~~~~~~~~~~~~~~ 239 (300)
T cd08604 160 ALTNAGYDNQTAQKVLIQSTDSSVLAAFKKQISYERVYVVDETIRDASDSSIEEIKKFADAVVIDRGSVFPVSTSFLTRQ 239 (300)
T ss_pred HHHHcCCCCCCCCeEEEEcCCHHHHHHHHhccCCceEEEecCcccccChhHHHHHHHhccEEEeChhhcccccCCcccCc
Confidence 99999985321148999999999999999987888999986433333334455666778888877666655433344445
Q ss_pred hHHHHHHHHCCCcEEEEecCCcccccccccCCChHHHHHHHHhhcCcCEEEeCChHHHHHH
Q 004721 648 TDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPMTAARY 708 (733)
Q Consensus 648 ~~~v~~~~~~Gl~v~~wTvn~~~~~~~~~~~~d~~~e~~~~l~~~GVdgIiTD~P~~~~~~ 708 (733)
+++|+.+|++|++|++||||++...++++|+.||++++.+++.++||||||||+|+++.+|
T Consensus 240 ~~~v~~a~~~Gl~v~vwTvn~~~~~~~~~~~~~~~~~~~~~~~~~GVdgIiTD~P~~~~~~ 300 (300)
T cd08604 240 TNVVEKLQSANLTVYVEVLRNEFVSLAFDFFADPTVEINSYVQGAGVDGFITEFPATAARY 300 (300)
T ss_pred hHHHHHHHHCCCEEEEEEecCCccccchhccCCHHHHHHHHHHHcCCCEEEecCchhhhcC
Confidence 6899999999999999999998778899999999877776666899999999999998764
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) repeat 2 present in glycerophosphodiester phosphodiesterase (GP-GDE)-like protein SHV3 and SHV3-like proteins (SVLs), which may play important an role in cell wall organization. The prototype of this family is a glycosylphosphatidylinositol (GPI) anchored protein SHV3 encoded by shaven3 (shv3) gene from Arabidopsis thaliana. Members in this family show sequence homology to bacterial GP-GDEs (EC 3.1.4.46) that catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Both, SHV3 and SVLs, have two tandemly repeated GDPD domains whose biochemical functions remain unclear. The residues essential for interactions with the substrates and calcium ions in bacterial GP |
| >cd08603 GDPD_SHV3_repeat_1 Glycerophosphodiester phosphodiesterase domain repeat 1 of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-51 Score=425.23 Aligned_cols=278 Identities=26% Similarity=0.461 Sum_probs=240.5
Q ss_pred ceEEecCCCCCCCCCchHHHHHHHHHCCC--CeeecCceeecCCeEEEeeccccccccccCCCcCCCccccc-ccccccC
Q 004721 408 LLVISKNGASGDYPSCTNLAYQKAISDGV--DFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTI-PEIMAGS 484 (733)
Q Consensus 408 ~~iIaHRG~~~~~PENTl~Af~~A~~~Ga--d~iE~DV~lTkDgv~Vv~HD~~L~rtt~v~~~~~~~r~~~~-~~~~~~~ 484 (733)
|+||||||++|.+||||++||+.|+++|| ++||||||+||||++||+||.+|+|+||++. .|++|++++ ++|+..+
T Consensus 1 plVIAHRGasg~~PEnTl~Ay~~Ai~~Ga~~d~IE~DV~lTkDgvlVv~HD~~L~rtT~v~~-~F~~r~~t~~idG~~~~ 79 (299)
T cd08603 1 PLVIARGGFSGLFPDSSLFAYQFAASSSSPDVALWCDLQLTKDGVGICLPDLNLDNSTTIAR-VYPKRKKTYSVNGVSTK 79 (299)
T ss_pred CeEEecCCCCCCCCcchHHHHHHHHHcCCCCCEEEEEeeECcCCcEEEeCCccccccCCCcc-ccccccccccccccccC
Confidence 57999999999999999999999999999 4799999999999999999999999999887 499998874 6999999
Q ss_pred cccccccCHHHHhccCccccCCCccccccCCcCCCCCccccCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCCcHHHH
Q 004721 485 GIFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNS 564 (733)
Q Consensus 485 g~~i~d~T~~EL~~L~~~~~~~~~~~~~~~~~~~~g~~~IptLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~ 564 (733)
|+++.|+||+||++|++.... .++++.|.|..+||||+|+|++++.. ++++|||.+.++. +.|.++++.
T Consensus 80 g~~~~d~TlaELk~L~~~~~~------~~r~~~~~g~~~IpTLeEvl~~~~~~----gi~i~ie~~~~~~-~~gl~~~~~ 148 (299)
T cd08603 80 GWFSVDFTLAELQQVTLIQGI------FSRTPIFDGQYPISTVEDVVTLAKPE----GLWLNVQHDAFYQ-QHNLSMSSY 148 (299)
T ss_pred CceeccCCHHHHhhCCCCCCc------ccCCcccCCcCCCCCHHHHHHHhHhc----CeEEEEecHHHHH-HcCCCHHHH
Confidence 988999999999999986432 22567777655999999999999875 7999999998886 589999999
Q ss_pred HHHHHHHcCCCCCCCceEEEEeCCHHHHHHHHhc---cCceEEE-Eeecc---------cchhhhHHHHHHHHHHhHhcC
Q 004721 565 VMEALGNAGYNKQTALKVMIQSTDSSVLMKLREK---TSYELVY-KVKEN---------IRDALNQTIEDIKKFADSVVL 631 (733)
Q Consensus 565 v~~~l~~~~~~~~~~~~vii~Sfd~~~L~~lk~~---p~~~~~~-l~~~~---------~~~~~~~~l~~i~~~a~~i~~ 631 (733)
|+++|++++ .++||||+...|+++++. +++++++ +.+.. +.++.. ++++|++||++|+|
T Consensus 149 l~~~L~~~~-------~v~iQSfe~~~L~~l~~~~~~~~~~Lv~~l~~~~~~~~~~~~~y~~~~~-~L~eIa~yAdgig~ 220 (299)
T cd08603 149 LLSLSKTVK-------VDYISSPEVGFLKSIGGRVGRNGTKLVFRFLDKDDVEPSTNQTYGSILK-NLTFIKTFASGILV 220 (299)
T ss_pred HHHHHHHcC-------cEEEECCCHHHHHHHHHhcccCCCCeeeEeccCCCcCCCCCccHHHHHH-hHHHHHHHHhhcCC
Confidence 999999885 479999999999999875 5677775 54331 122222 58899999999999
Q ss_pred CCcccccCC-ccccccchHHHHHHHHCCCcEEEEecCCcccccccccCCChHHHHHHHHhhcC---cCEEEeCChHHHHH
Q 004721 632 SKESVYPLN-SAFITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAG---IDGVITEFPMTAAR 707 (733)
Q Consensus 632 ~~~~i~~~~-~~~l~~~~~~v~~~~~~Gl~v~~wTvn~~~~~~~~~~~~d~~~e~~~~l~~~G---VdgIiTD~P~~~~~ 707 (733)
++.+++|.. ..++...+.+|+.+|++|+.||+||++++.. ++++|+.||..|+..++ ..| ||||+||+|+++.+
T Consensus 221 ~k~~i~p~~~~~~~~~~t~lV~~Ah~agL~Vh~~tfr~e~~-~~~~~~~d~~~e~~~~~-~~g~~~vDGvfTDfP~~a~~ 298 (299)
T cd08603 221 PKSYIWPVDSDQYLQPATSLVQDAHKAGLEVYASGFANDFD-ISYNYSYDPVAEYLSFV-GNGNFSVDGVLSDFPITASE 298 (299)
T ss_pred ChhheeecCCCCcccCccHHHHHHHHcCCeEEEEEeeCCCC-ccccccCCHHHHHHHHH-hcCCCCCCEEEecCchhhcc
Confidence 999999875 4566667789999999999999999999976 99999999999999997 777 99999999998754
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) repeat 1 present in glycerophosphodiester phosphodiesterase (GP-GDE)-like protein SHV3 and SHV3-like proteins (SVLs), which may play an important role in cell wall organization. The prototype of this family is a glycosylphosphatidylinositol (GPI) anchored protein SHV3 encoded by shaven3 (shv3) gene from Arabidopsis thaliana. Members in this family show sequence homology to bacterial GP-GDEs (EC 3.1.4.46) that catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Both, SHV3 and SVLs, have two tandemly repeated GDPD domains whose biochemical functions remain unclear. The residues essential for interactions with the substrates and calcium ions in bacterial GP |
| >cd08571 GDPD_SHV3_plant Glycerophosphodiester phosphodiesterase domain of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-51 Score=435.47 Aligned_cols=283 Identities=44% Similarity=0.740 Sum_probs=232.0
Q ss_pred CEEEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCCccccCccccccccccccccCCCCCCc
Q 004721 92 PFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPG 171 (733)
Q Consensus 92 ~~viaHRG~~~~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l~rtt~~~~~~~~~~~~~~~~g~~~~g 171 (733)
|+||||||+++.+||||++||+.|+++||| +||||||+||||++||+||++|+||||+.+.++.+++++.++|.+..|
T Consensus 1 p~iiaHRG~~~~~PENTl~Af~~A~~~Gad--~IE~DV~lTkDg~lVv~HD~~l~rtt~~~~~~~~~~~~~~~~~~~~~g 78 (302)
T cd08571 1 PLVIARGGASGDYPDSTDLAYQKAISDGAD--VLDCDVQLTKDGVPICLPSINLDNSTTIASVFPKRKKTYVVEGQSTSG 78 (302)
T ss_pred CeEEeCCCcCCCCCcchHHHHHHHHHcCCC--EEEeeeeEcCCCcEEEeCCchhcCCcccccccccccceecccCcccCC
Confidence 679999999999999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred cccccCCHHhhccccccccccC----CCCCCCCCCcccccHHHHHHhhCC---CceEeeccCchhhhh-cCCcHHHHHHH
Q 004721 172 WFSIDYTLNDLSNIILNQGVYS----RTDKFDGNGFQILTVQDMARQIKP---PGLWLNIQHDAFYAQ-HNLSMRSFVLS 243 (733)
Q Consensus 172 ~~v~d~T~~eL~~l~~~~~~~~----~~~~~~g~~~~iptL~e~l~~~~~---~~l~iEiK~~~~~~~-~~~~~~~~v~~ 243 (733)
|++.|+||+||++|+++.++.+ +.+.|.+ +++||||+|+|++++. .+++||||.+..... .+..+++.+++
T Consensus 79 ~~v~d~T~aeL~~l~~~~~~~~~~~~~~~~~~~-~~~IptL~evl~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~v~~ 157 (302)
T cd08571 79 IFSFDLTWAEIQTLKPIISNPFSVLFRNPRNDN-AGKILTLEDFLTLAKPKSLSGVWINVENAAFLAEHKGLLSVDAVLT 157 (302)
T ss_pred eeeeeCCHHHHhhCcccccCcccccCCCcccCC-CCCcCCHHHHHHhhhccCCceEEEEccCchhhhhhccccHHHHHHH
Confidence 9999999999999999653322 3455666 6799999999999975 579999997654322 12468899999
Q ss_pred HHhhcCC------ceeccCCHHHHHHHHHhc--CCCcccchhhhcCCCccCCCCCcchhHHHhhHHHHHhhcccccCCcc
Q 004721 244 VSRSVVV------NYISSPEVNFLRSIAARF--RPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTFASGILVPKD 315 (733)
Q Consensus 244 ~l~~~~~------~~i~SF~~~~l~~l~~~~--p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~i~~~~~ 315 (733)
+++++++ ++||||++++|++++++. | .+++++ +..... . .+ ....+..+..++.++++++.
T Consensus 158 ~l~~~~~~~~~~~v~i~SF~~~~L~~~~~~~~~p--~v~~~~-l~~~~~--~----~~--~~~~l~~~~~~a~~v~~~~~ 226 (302)
T cd08571 158 SLSKAGYDQTAKKVYISSPDSSVLKSFKKRVGTK--LVFRVL-DVDDTE--P----DT--LLSNLTEIKKFASGVLVPKS 226 (302)
T ss_pred HHHHcCCCCCCCCEEEeCCCHHHHHHHHhccCCC--ceEEEe-ecCCCc--C----CC--ChhHHHHHHHhcCccccChh
Confidence 9999864 489999999999999999 7 677775 322110 0 01 01135666778999999887
Q ss_pred ccccCCCccCCCCChHHHHHHHHcCCeEEEeecCCC-CCcccCCCCChHHHHHHHHhc--CCcccceEEecCCCCcccc
Q 004721 316 YIWPVDESLYLLPHTTIVLDAHKERLEVFASNFAND-IPISFNYSYDPLTEYLSFIDN--GDFSVDGVLSDFPLTPSAA 391 (733)
Q Consensus 316 ~i~~~~~~~~~~~~~~~v~~ah~~Gl~V~~WTvn~~-~~~~~~~~~d~~~~~~~l~~~--G~~~VDgIiTD~P~~~~~~ 391 (733)
.+.+.....+...++++|++||++|++|++||||++ ....|.+..|+..++.+++.. | |||||||+|++++++
T Consensus 227 ~~~~~~~~~~~~~~~~~V~~ah~~Gl~V~~wTvn~~~~~~~~~~~~~~~~~~~~~~~~~~g---VDGiiTD~P~~~~~~ 302 (302)
T cd08571 227 YIWPVDSDSFLTPQTSVVQDAHKAGLEVYVSGFANEFVSLAYDYSADPTLEILSFVGNGNS---VDGVITDFPATAARA 302 (302)
T ss_pred HeeecCCCCcccCccHHHHHHHHcCCEEEEEEEecCcccccccccCCHHHHHHHHHHhcCC---CCEEEecCchhhhcC
Confidence 776533223334446899999999999999999997 456788878888899999987 8 999999999988653
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase (GDPD) domain present in glycerophosphodiester phosphodiesterase (GP-GDE)-like protein SHV3 and SHV3-like proteins (SVLs), which may play an important role in cell wall organization. The prototype of this family is a glycosylphosphatidylinositol (GPI) anchored protein SHV3 encoded by shaven3 (shv3) gene from Arabidopsis thaliana. Members in this family show sequence homology to bacterial GP-GDEs (EC 3.1.4.46) that catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Both, SHV3 and SVLs, have two tandemly repeated GDPD domains whose biochemical functions remain unclear. The residues essential for interactions with the substrates and calcium ions in bacterial GP-GDEs are not conserv |
| >cd08571 GDPD_SHV3_plant Glycerophosphodiester phosphodiesterase domain of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-50 Score=429.50 Aligned_cols=296 Identities=50% Similarity=0.786 Sum_probs=238.0
Q ss_pred ceEEecCCCCCCCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeeccccccccccCCCcCCCccc-ccccccccCcc
Q 004721 408 LLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITT-TIPEIMAGSGI 486 (733)
Q Consensus 408 ~~iIaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L~rtt~v~~~~~~~r~~-~~~~~~~~~g~ 486 (733)
|+||||||+++.+||||++||++|+++|||+||||||+||||++||+||.+|+|+||++.. |+.|+. +.+++.++.|+
T Consensus 1 p~iiaHRG~~~~~PENTl~Af~~A~~~Gad~IE~DV~lTkDg~lVv~HD~~l~rtt~~~~~-~~~~~~~~~~~~~~~~g~ 79 (302)
T cd08571 1 PLVIARGGASGDYPDSTDLAYQKAISDGADVLDCDVQLTKDGVPICLPSINLDNSTTIASV-FPKRKKTYVVEGQSTSGI 79 (302)
T ss_pred CeEEeCCCcCCCCCcchHHHHHHHHHcCCCEEEeeeeEcCCCcEEEeCCchhcCCcccccc-cccccceecccCcccCCe
Confidence 5799999999999999999999999999999999999999999999999999999998763 666655 46788888997
Q ss_pred cccccCHHHHhccCccccCCCccccccCCcCCCCCccccCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCCcHHHHHH
Q 004721 487 FSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVM 566 (733)
Q Consensus 487 ~i~d~T~~EL~~L~~~~~~~~~~~~~~~~~~~~g~~~IptLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~v~ 566 (733)
+|.++|++||++|+++...+|.. .++++.+.++++||||+|+|++++.... .+++||||.+.......+..+++.++
T Consensus 80 ~v~d~T~aeL~~l~~~~~~~~~~--~~~~~~~~~~~~IptL~evl~~~~~~~~-~~l~iEiK~~~~~~~~~~~~~~~~v~ 156 (302)
T cd08571 80 FSFDLTWAEIQTLKPIISNPFSV--LFRNPRNDNAGKILTLEDFLTLAKPKSL-SGVWINVENAAFLAEHKGLLSVDAVL 156 (302)
T ss_pred eeeeCCHHHHhhCcccccCcccc--cCCCcccCCCCCcCCHHHHHHhhhccCC-ceEEEEccCchhhhhhccccHHHHHH
Confidence 79999999999999864333211 2345566666799999999999997532 27999999765432112346889999
Q ss_pred HHHHHcCCCCCCCceEEEEeCCHHHHHHHHhc---cCceEEEEeecccchhhhHHHHHHHHHHhHhcCCCcccccCC-cc
Q 004721 567 EALGNAGYNKQTALKVMIQSTDSSVLMKLREK---TSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLN-SA 642 (733)
Q Consensus 567 ~~l~~~~~~~~~~~~vii~Sfd~~~L~~lk~~---p~~~~~~l~~~~~~~~~~~~l~~i~~~a~~i~~~~~~i~~~~-~~ 642 (733)
++++++++... .++|+|+||++.+|++++++ |.++++++++....+.....+..+..+|++++++...+.+.. ..
T Consensus 157 ~~l~~~~~~~~-~~~v~i~SF~~~~L~~~~~~~~~p~v~~~~l~~~~~~~~~~~~l~~~~~~a~~v~~~~~~~~~~~~~~ 235 (302)
T cd08571 157 TSLSKAGYDQT-AKKVYISSPDSSVLKSFKKRVGTKLVFRVLDVDDTEPDTLLSNLTEIKKFASGVLVPKSYIWPVDSDS 235 (302)
T ss_pred HHHHHcCCCCC-CCCEEEeCCCHHHHHHHHhccCCCceEEEeecCCCcCCCChhHHHHHHHhcCccccChhHeeecCCCC
Confidence 99999988521 15999999999999999987 788888887543222223446777888899988776666532 13
Q ss_pred ccccchHHHHHHHHCCCcEEEEecCCcccccccccCCChHHHHHHHHhhc-CcCEEEeCChHHHHHH
Q 004721 643 FITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGA-GIDGVITEFPMTAARY 708 (733)
Q Consensus 643 ~l~~~~~~v~~~~~~Gl~v~~wTvn~~~~~~~~~~~~d~~~e~~~~l~~~-GVdgIiTD~P~~~~~~ 708 (733)
+....+++|+.+|++|++|++||+|++...+++.|+.|+..++.+++..+ ||||||||+|+++.+|
T Consensus 236 ~~~~~~~~V~~ah~~Gl~V~~wTvn~~~~~~~~~~~~~~~~~~~~~~~~~~gVDGiiTD~P~~~~~~ 302 (302)
T cd08571 236 FLTPQTSVVQDAHKAGLEVYVSGFANEFVSLAYDYSADPTLEILSFVGNGNSVDGVITDFPATAARA 302 (302)
T ss_pred cccCccHHHHHHHHcCCEEEEEEEecCcccccccccCCHHHHHHHHHHhcCCCCEEEecCchhhhcC
Confidence 33445689999999999999999999988889999999999999998454 9999999999998764
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase (GDPD) domain present in glycerophosphodiester phosphodiesterase (GP-GDE)-like protein SHV3 and SHV3-like proteins (SVLs), which may play an important role in cell wall organization. The prototype of this family is a glycosylphosphatidylinositol (GPI) anchored protein SHV3 encoded by shaven3 (shv3) gene from Arabidopsis thaliana. Members in this family show sequence homology to bacterial GP-GDEs (EC 3.1.4.46) that catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Both, SHV3 and SVLs, have two tandemly repeated GDPD domains whose biochemical functions remain unclear. The residues essential for interactions with the substrates and calcium ions in bacterial GP-GDEs are not conserv |
| >cd08602 GDPD_ScGlpQ1_like Glycerophosphodiester phosphodiesterase domain of Streptomycin coelicolor (GlpQ1) and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-49 Score=421.29 Aligned_cols=285 Identities=31% Similarity=0.471 Sum_probs=234.7
Q ss_pred CEEEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCCccccCccc--cccccccccccCCCCC
Q 004721 92 PFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQ--IFKTQQKNYLVNGVPT 169 (733)
Q Consensus 92 ~~viaHRG~~~~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l~rtt~~~~--~~~~~~~~~~~~g~~~ 169 (733)
|+||||||+++.+||||++||+.|++.|+| +||||||+||||++||+||.+|+|||++.+ .|++|++++.++|.+.
T Consensus 1 p~iiAHRG~~~~~PENTl~Af~~A~~~Gad--~iE~DVqlTkDg~lVv~HD~~l~rtt~~~~~~~~~~r~~~~~i~~~~~ 78 (309)
T cd08602 1 PLVIAHRGASGYRPEHTLAAYQLAIEQGAD--FIEPDLVSTKDGVLICRHEPELSGTTDVADHPEFADRKTTKTVDGVNV 78 (309)
T ss_pred CeEEecCCCCCCCCccHHHHHHHHHHcCCC--EEEEeeeECCCCcEEEeCCCccccccCccccccccccccccccCCccc
Confidence 679999999999999999999999999999 999999999999999999999999999977 5888888899999999
Q ss_pred CccccccCCHHhhccccccccccCCCCCCCCCCcccccHHHHHHhhC--------CCceEeeccCchhhhh-cCCcHHHH
Q 004721 170 PGWFSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIK--------PPGLWLNIQHDAFYAQ-HNLSMRSF 240 (733)
Q Consensus 170 ~g~~v~d~T~~eL~~l~~~~~~~~~~~~~~g~~~~iptL~e~l~~~~--------~~~l~iEiK~~~~~~~-~~~~~~~~ 240 (733)
.||.|.++||+||++|+++.++....+.|.+ .++||||+|+|++++ +++++||||.+..... .+..+++.
T Consensus 79 ~~~~v~d~t~~eL~~l~~~~~~~~~~~~~~~-~~~iptL~Evl~~~~~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~ 157 (309)
T cd08602 79 TGWFTEDFTLAELKTLRARQRLPYRDQSYDG-QFPIPTFEEIIALAKAASAATGRTVGIYPEIKHPTYFNAPLGLPMEDK 157 (309)
T ss_pred CCeeeccCCHHHHhhCccCCcCcccCcccCC-CcCcCCHHHHHHHHHhhhhcccccceeEEeecCchhcccccCCCHHHH
Confidence 9989999999999999999887654455666 569999999999985 3579999997654322 34578999
Q ss_pred HHHHHhhcCC------ceeccCCHHHHHHHHHhcCCCcccchhhhcCCCc--cCC--CCCcchhHHHh--hHHHHHhhcc
Q 004721 241 VLSVSRSVVV------NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSE--IEP--TTNQTYGSLLK--NLTFIKTFAS 308 (733)
Q Consensus 241 v~~~l~~~~~------~~i~SF~~~~l~~l~~~~p~~~~~~~~~l~~~~~--~~~--~~~~~~~~~~~--~l~~~~~~a~ 308 (733)
++++++++++ ++|+|||+++|++++++. +.++++++..... ..+ ..+..|.++.. .++.+..++.
T Consensus 158 v~~~l~~~~~~~~~~~v~i~SFd~~~L~~~~~~~---~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (309)
T cd08602 158 LLETLKKYGYTGKKAPVFIQSFEVTNLKYLRNKT---DLPLVQLIDDATIPPQDTPEGDSRTYADLTTDAGLKEIATYAD 234 (309)
T ss_pred HHHHHHHcCCCCCCCCEEEECCCHHHHHHHHhhh---CCCeEEEecCCCCCcccccccCccchhhhcCHHHHHHHHhhce
Confidence 9999999875 389999999999999987 3577763322111 000 11234443322 4566667888
Q ss_pred cccCCccccccCCCccCCCCChHHHHHHHHcCCeEEEeecCCC-CCcccCCCCChHHHHHHHHhcCCcccceEEecCC
Q 004721 309 GILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFAND-IPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFP 385 (733)
Q Consensus 309 ~i~~~~~~i~~~~~~~~~~~~~~~v~~ah~~Gl~V~~WTvn~~-~~~~~~~~~d~~~~~~~l~~~G~~~VDgIiTD~P 385 (733)
+++|++..+.+....+....++++|+.||++|++|++||||++ ...+++|..|+.++|++++++| |||||||+|
T Consensus 235 ~i~~~~~~~~~~~~~~~~~~~~~~v~~a~~~gl~v~~wTvn~~~~~~~~~~~~~~~~~~~~l~~~G---VdgiiTD~P 309 (309)
T cd08602 235 GIGPWKDLIIPSDANGRLGTPTDLVEDAHAAGLQVHPYTFRNENTFLPPDFFGDPYAEYRAFLDAG---VDGLFTDFP 309 (309)
T ss_pred EEecchheEEecCCCCcccCccHHHHHHHHcCCEEEEEEecCCCcccCcccCCCHHHHHHHHHHhC---CCEEeCCCC
Confidence 9999988877654445566678999999999999999999987 4567888888889999999999 999999998
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of putative bacterial and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) similar to Escherichia coli periplasmic phosphodiesterase GlpQ, as well as plant glycerophosphodiester phosphodiesterases (GP-PDEs), all of which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. The prototypes of this family include putative secreted phosphodiesterase encoded by gene glpQ1 (SCO1565) from the pho regulon in Streptomyces coelicolor genome, and in plants, two distinct Arabidopsis thaliana genes, AT5G08030 and AT1G74210, coding putative GP-PDEs from the cell walls and vacuoles, respectively. |
| >cd08560 GDPD_EcGlpQ_like_1 Glycerophosphodiester phosphodiesterase domain similar to Escherichia coli periplasmic phosphodiesterase (GlpQ) include uncharacterized proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-48 Score=414.59 Aligned_cols=292 Identities=15% Similarity=0.137 Sum_probs=222.3
Q ss_pred CCCEEEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCC-CCccccCccc--cccccccccccCC
Q 004721 90 DPPFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDL-KLDNASNIAQ--IFKTQQKNYLVNG 166 (733)
Q Consensus 90 ~~~~viaHRG~~~~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~-~l~rtt~~~~--~~~~~~~~~~~~g 166 (733)
..++||||||+++.+||||++||+.|+++||| +||+|||+||||++||+||. +|+||||+.+ .|++++++..++|
T Consensus 15 ~~~~iIAHRGasg~~PEnTl~Af~~Ai~~Gad--~IE~DV~lTkDg~lVV~HD~~~L~rtTnv~~~pe~a~r~~~~~~~g 92 (356)
T cd08560 15 KTDFSIGHRGAPLQFPEHTRESYEAAARMGAG--ILECDVTFTKDRELVCRHSQCDLHTTTNILAIPELAAKCTQPFTPA 92 (356)
T ss_pred CCceEEEcCCCCCCCCcchHHHHHHHHHcCCC--EEEEEeeEccCCcEEEECCCccccCccCCccccchhhhcccccccc
Confidence 46789999999999999999999999999999 99999999999999999997 8999999986 6899999888888
Q ss_pred CC----CCccccccCCHHhhccccccccc-c---------------CCCCCCCCCCcccccHHHHHHhhC--CCceEeec
Q 004721 167 VP----TPGWFSIDYTLNDLSNIILNQGV-Y---------------SRTDKFDGNGFQILTVQDMARQIK--PPGLWLNI 224 (733)
Q Consensus 167 ~~----~~g~~v~d~T~~eL~~l~~~~~~-~---------------~~~~~~~g~~~~iptL~e~l~~~~--~~~l~iEi 224 (733)
.. .++|++.||||+||++|+++.+. . ++++.|++ +++||||+|+|++++ .++++|||
T Consensus 93 ~~~~~~~~~~~v~d~TlaELk~L~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~IPTL~Evl~lv~~~~v~l~iEi 171 (356)
T cd08560 93 NATKPASAECCTSDITLAEFKSLCGKMDASNPSATTPEEYQNGTPDWRTDLYAT-CGTLMTHKESIALFKSLGVKMTPEL 171 (356)
T ss_pred ccccccccCcchhhCcHHHHhcCCCccccccccccccccccccccccccccccC-CCCCCCHHHHHHHHHhcCceEEEEe
Confidence 75 66799999999999999876321 0 23334555 689999999999996 47899999
Q ss_pred cCchhhhhc-C----CcHHHHHHHHHhhcCC----ceeccCCHHHHHHHHHhcCCCcccchhhhcCCCccCCCCCcchhH
Q 004721 225 QHDAFYAQH-N----LSMRSFVLSVSRSVVV----NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGS 295 (733)
Q Consensus 225 K~~~~~~~~-~----~~~~~~v~~~l~~~~~----~~i~SF~~~~l~~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~ 295 (733)
|++...... + ..+++.++++++++++ ++||||+++.|++++++.|....++++ +.+..... . ..+.
T Consensus 172 K~~~~~~~~~g~~~~~~~~~~l~~~l~~~g~~~~~v~iqSFd~~~L~~~~~~~p~~~~~l~~-l~~~~~~~-~--~~~~- 246 (356)
T cd08560 172 KSPSVPMPFDGNYTQEDYAQQMIDEYKEAGVPPSRVWPQSFNLDDIFYWIKNEPDFGRQAVY-LDDRDDTA-D--FPAT- 246 (356)
T ss_pred CCCcccccccccccHHHHHHHHHHHHHHcCCCCCCEEEECCCHHHHHHHHHhCCCCCeeEEE-EccCCccc-c--cccc-
Confidence 977653221 1 1588999999999875 599999999999999998832223343 22221100 0 0111
Q ss_pred HHhhHHHH-HhhcccccCCccccccCCCccCCCCChHHHHHHHHcCCeEEEeecCCC-CCc--c-c---------CCCCC
Q 004721 296 LLKNLTFI-KTFASGILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFAND-IPI--S-F---------NYSYD 361 (733)
Q Consensus 296 ~~~~l~~~-~~~a~~i~~~~~~i~~~~~~~~~~~~~~~v~~ah~~Gl~V~~WTvn~~-~~~--~-~---------~~~~d 361 (733)
....++.+ +.++++++|++.++...+..+ ...++++|+.||++|++|++|||+++ .+. . + +...|
T Consensus 247 ~~~~l~~i~a~~a~~i~P~~~~l~~~~~~~-~~~~~~~v~~Ah~~GL~V~~WTvr~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (356)
T cd08560 247 WSPSMDELKARGVNIIAPPIWMLVDPDENG-KIVPSEYAKAAKAAGLDIITWTLERSGPLASGGGWYYQTIEDVINNDGD 325 (356)
T ss_pred HHHHHHHHHhCCccEecCchhhcccccccc-ccCCHHHHHHHHHcCCEEEEEEeecCcccccCccccccccccccccccc
Confidence 22356666 557889999988776543222 23568999999999999999999875 222 1 1 12334
Q ss_pred hHHHHHHHH-hcCCcccceEEecCCCCccccch
Q 004721 362 PLTEYLSFI-DNGDFSVDGVLSDFPLTPSAAVD 393 (733)
Q Consensus 362 ~~~~~~~l~-~~G~~~VDgIiTD~P~~~~~~l~ 393 (733)
-.+++..++ ++| |||||||+|++...+.+
T Consensus 326 ~~~~~~~~~~~~G---vDGvftD~p~~~~~~~~ 355 (356)
T cd08560 326 MYNVLDVLARDVG---ILGIFSDWPATVTYYAN 355 (356)
T ss_pred HHHHHHHHHHhcC---CCEEEccCCCceeEecC
Confidence 456777776 688 99999999998876654
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and their hypothetical homologs. Members in this subfamily show high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. |
| >PRK11143 glpQ glycerophosphodiester phosphodiesterase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-48 Score=417.25 Aligned_cols=289 Identities=22% Similarity=0.319 Sum_probs=214.5
Q ss_pred CCCEEEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCCccccCccccccccccccccCCCCC
Q 004721 90 DPPFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPT 169 (733)
Q Consensus 90 ~~~~viaHRG~~~~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l~rtt~~~~~~~~~~~~~~~~g~~~ 169 (733)
.+|+||||||+++.+||||++||++|++.|+| +||||||+||||++||+||.+|+|+|++.+.|+.+++. +
T Consensus 25 ~~pliiAHRGas~~~PENTl~Af~~A~~~GaD--~IE~DV~lTkDg~lVv~HD~~l~rtT~~~~~~~~~~~~---~---- 95 (355)
T PRK11143 25 AEKIVIAHRGASGYLPEHTLPAKAMAYAQGAD--YLEQDLVMTKDDQLVVLHDHYLDRVTDVAERFPDRARK---D---- 95 (355)
T ss_pred CCcEEEECCCCCCCCCcchHHHHHHHHHcCCC--EEEEeeeEccCCcEEEeCCchhcccCCccccccccccc---C----
Confidence 47999999999999999999999999999999 99999999999999999999999999998888776653 1
Q ss_pred CccccccCCHHhhccccccccccC--------CCCCCC--CCCcccccHHHHHHhhC--------CCceEeeccCchhhh
Q 004721 170 PGWFSIDYTLNDLSNIILNQGVYS--------RTDKFD--GNGFQILTVQDMARQIK--------PPGLWLNIQHDAFYA 231 (733)
Q Consensus 170 ~g~~v~d~T~~eL~~l~~~~~~~~--------~~~~~~--g~~~~iptL~e~l~~~~--------~~~l~iEiK~~~~~~ 231 (733)
++|+|.++||+||++|+++.+|.. ++..|. ..+++||||+|+|++++ +.+++||||.+....
T Consensus 96 g~~~v~dlT~aEL~~ld~~~~f~~~~g~~~~~~~~~~~~~~~~~~IPTL~Evl~~~~~~~~~~~~~~~l~IEiK~~~~~~ 175 (355)
T PRK11143 96 GRYYAIDFTLDEIKSLKFTEGFDIENGKKVQVYPGRFPMGKSDFRVHTFEEEIEFIQGLNHSTGKNIGIYPEIKAPWFHH 175 (355)
T ss_pred CceeEeeCcHHHHhhCCCCCCcccccccccccccccccccCCCCccCCHHHHHHHHHHhhhhcCCCceeeEeccCccccc
Confidence 346899999999999999987631 122222 01489999999999885 357999999865433
Q ss_pred hcCCcHHHHHHHHHhhcCC------ceeccCCHHHHHHHHH-hcCCC--cccchhhhcCCCccCC------C--CCcchh
Q 004721 232 QHNLSMRSFVLSVSRSVVV------NYISSPEVNFLRSIAA-RFRPS--MTKLVFRFLGKSEIEP------T--TNQTYG 294 (733)
Q Consensus 232 ~~~~~~~~~v~~~l~~~~~------~~i~SF~~~~l~~l~~-~~p~~--~~~~~~~l~~~~~~~~------~--~~~~~~ 294 (733)
..+.++++.++++++++++ ++|+||+++.|+++++ ..|.. +.++++++........ . .+..|.
T Consensus 176 ~~~~~~~~~v~~~l~~~g~~~~~~~v~i~SFd~~~L~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 255 (355)
T PRK11143 176 QEGKDIAAKVLEVLKKYGYTGKDDKVYLQCFDANELKRIKNELEPKMGMDLKLVQLIAYTDWNETQEKQPDGKWVNYNYD 255 (355)
T ss_pred ccchhHHHHHHHHHHHhCCCCCCCCEEEeCCCHHHHHHHHhhcCccccCCcceEEEeccCCCcccccccccCcccccchh
Confidence 3344688999999999886 4899999999999998 66610 1366653321111100 0 011233
Q ss_pred HHH--hhHHHHHhhcccccCCccccccCCCccCCCCChHHHHHHHHcCCeEEEeecCCCCCcccCCCCChHHHHHHHH--
Q 004721 295 SLL--KNLTFIKTFASGILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFI-- 370 (733)
Q Consensus 295 ~~~--~~l~~~~~~a~~i~~~~~~i~~~~~~~~~~~~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~~~~~l~-- 370 (733)
++. ..+..+..++.+++|.+..+...+.......++++|+++|++|++|++||||++... .|..| .++|.+++
T Consensus 256 ~~~~~~~~~~~~~~a~~i~p~~~~l~~~~~~~~~~~~~~~v~~ah~~Gl~V~~WTVn~~~~~--~~~~d-~~~~~~~~~~ 332 (355)
T PRK11143 256 WMFKPGAMKEVAKYADGIGPDYHMLVDETSTPGNIKLTGMVKEAHQAKLVVHPYTVRADQLP--EYATD-VNQLYDILYN 332 (355)
T ss_pred hhcChhhHHHHHhhceeecCChhheeeccccCCccChHHHHHHHHHcCCEEEEEEeccccch--hhhcC-hHHHHHHHHH
Confidence 321 145566667889998876554321122344567899999999999999999986321 23323 46776665
Q ss_pred hcCCcccceEEecCCCCccccch
Q 004721 371 DNGDFSVDGVLSDFPLTPSAAVD 393 (733)
Q Consensus 371 ~~G~~~VDgIiTD~P~~~~~~l~ 393 (733)
++| |||||||+|+++++++.
T Consensus 333 ~~G---VDGIiTD~P~~~~~~l~ 352 (355)
T PRK11143 333 QAG---VDGVFTDFPDKAVKFLN 352 (355)
T ss_pred ccC---CCEEEcCChHHHHHHHh
Confidence 889 99999999999887764
|
|
| >cd08602 GDPD_ScGlpQ1_like Glycerophosphodiester phosphodiesterase domain of Streptomycin coelicolor (GlpQ1) and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-48 Score=409.09 Aligned_cols=286 Identities=30% Similarity=0.459 Sum_probs=230.5
Q ss_pred ceEEecCCCCCCCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeeccccccccccCCCc-CCCcccc-cccccccCc
Q 004721 408 LLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSK-FNSITTT-IPEIMAGSG 485 (733)
Q Consensus 408 ~~iIaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L~rtt~v~~~~-~~~r~~~-~~~~~~~~g 485 (733)
|+||||||+++.+||||++||++|++.|||+||||||+||||++||+||.+|+|+||+.... |++|+.+ .+++.+..|
T Consensus 1 p~iiAHRG~~~~~PENTl~Af~~A~~~Gad~iE~DVqlTkDg~lVv~HD~~l~rtt~~~~~~~~~~r~~~~~i~~~~~~~ 80 (309)
T cd08602 1 PLVIAHRGASGYRPEHTLAAYQLAIEQGADFIEPDLVSTKDGVLICRHEPELSGTTDVADHPEFADRKTTKTVDGVNVTG 80 (309)
T ss_pred CeEEecCCCCCCCCccHHHHHHHHHHcCCCEEEEeeeECCCCcEEEeCCCccccccCccccccccccccccccCCcccCC
Confidence 57999999999999999999999999999999999999999999999999999999976532 7777755 346666677
Q ss_pred ccccccCHHHHhccCccccCCCccccccCCcCCCCCccccCHHHHHHHHHhcC-----CCceEEEEecchhHHHhhcCCc
Q 004721 486 IFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNAN-----SLSGVLISIENAVYLAEKQGMS 560 (733)
Q Consensus 486 ~~i~d~T~~EL~~L~~~~~~~~~~~~~~~~~~~~g~~~IptLeEvL~~~~~~~-----~~~~l~iEiK~~~~~~~~~~~~ 560 (733)
+.|.++|++||++|+++.+.+. +++.+.+.++||||+|+|++++..+ + ++++||||.+....+..+..
T Consensus 81 ~~v~d~t~~eL~~l~~~~~~~~------~~~~~~~~~~iptL~Evl~~~~~~~~~~~~~-~~l~iEiK~~~~~~~~~~~~ 153 (309)
T cd08602 81 WFTEDFTLAELKTLRARQRLPY------RDQSYDGQFPIPTFEEIIALAKAASAATGRT-VGIYPEIKHPTYFNAPLGLP 153 (309)
T ss_pred eeeccCCHHHHhhCccCCcCcc------cCcccCCCcCcCCHHHHHHHHHhhhhccccc-ceeEEeecCchhcccccCCC
Confidence 6799999999999999865431 2334555569999999999998752 2 48999999765432112357
Q ss_pred HHHHHHHHHHHcCCCCCCCceEEEEeCCHHHHHHHHhccCceEEEEeecccc---h------------hhhHHHHHHHHH
Q 004721 561 VTNSVMEALGNAGYNKQTALKVMIQSTDSSVLMKLREKTSYELVYKVKENIR---D------------ALNQTIEDIKKF 625 (733)
Q Consensus 561 ~~~~v~~~l~~~~~~~~~~~~vii~Sfd~~~L~~lk~~p~~~~~~l~~~~~~---~------------~~~~~l~~i~~~ 625 (733)
++++|+++++++++... .++|+|+|||+++|++++++.++++++++..... + ..+..++.+..+
T Consensus 154 ~~~~v~~~l~~~~~~~~-~~~v~i~SFd~~~L~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (309)
T cd08602 154 MEDKLLETLKKYGYTGK-KAPVFIQSFEVTNLKYLRNKTDLPLVQLIDDATIPPQDTPEGDSRTYADLTTDAGLKEIATY 232 (309)
T ss_pred HHHHHHHHHHHcCCCCC-CCCEEEECCCHHHHHHHHhhhCCCeEEEecCCCCCcccccccCccchhhhcCHHHHHHHHhh
Confidence 89999999999998621 1499999999999999998877888988854321 0 122345666677
Q ss_pred HhHhcCCCcccccCC-ccccccchHHHHHHHHCCCcEEEEecCCcccccccccCCChHHHHHHHHhhcCcCEEEeCCh
Q 004721 626 ADSVVLSKESVYPLN-SAFITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFP 702 (733)
Q Consensus 626 a~~i~~~~~~i~~~~-~~~l~~~~~~v~~~~~~Gl~v~~wTvn~~~~~~~~~~~~d~~~e~~~~l~~~GVdgIiTD~P 702 (733)
+++++++...+.+.. ...+..++++|+.+|++|++|++||+|++...++++|++|+.+++..++ ++||||||||+|
T Consensus 233 ~~~i~~~~~~~~~~~~~~~~~~~~~~v~~a~~~gl~v~~wTvn~~~~~~~~~~~~~~~~~~~~l~-~~GVdgiiTD~P 309 (309)
T cd08602 233 ADGIGPWKDLIIPSDANGRLGTPTDLVEDAHAAGLQVHPYTFRNENTFLPPDFFGDPYAEYRAFL-DAGVDGLFTDFP 309 (309)
T ss_pred ceEEecchheEEecCCCCcccCccHHHHHHHHcCCEEEEEEecCCCcccCcccCCCHHHHHHHHH-HhCCCEEeCCCC
Confidence 888888776665532 1234456799999999999999999999877888999999998999997 899999999998
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of putative bacterial and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) similar to Escherichia coli periplasmic phosphodiesterase GlpQ, as well as plant glycerophosphodiester phosphodiesterases (GP-PDEs), all of which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. The prototypes of this family include putative secreted phosphodiesterase encoded by gene glpQ1 (SCO1565) from the pho regulon in Streptomyces coelicolor genome, and in plants, two distinct Arabidopsis thaliana genes, AT5G08030 and AT1G74210, coding putative GP-PDEs from the cell walls and vacuoles, respectively. |
| >cd08604 GDPD_SHV3_repeat_2 Glycerophosphodiester phosphodiesterase domain repeat 2 of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-48 Score=408.61 Aligned_cols=280 Identities=22% Similarity=0.409 Sum_probs=216.6
Q ss_pred CEEEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCCccccCccc-cccccccccccCCCCCC
Q 004721 92 PFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQ-IFKTQQKNYLVNGVPTP 170 (733)
Q Consensus 92 ~~viaHRG~~~~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l~rtt~~~~-~~~~~~~~~~~~g~~~~ 170 (733)
|+||||||+++.+||||++||+.|++.|+| +||||||+||||++||+||++|+||||+.+ .|+.++++. .+....+
T Consensus 1 p~iiaHRG~~~~~PENTl~Af~~A~~~Gad--~iE~DV~lTkDG~lVv~HD~~l~rtt~~~~~~~~~~~~~~-~~~~~~~ 77 (300)
T cd08604 1 PLIISHNGASGDYPGCTDLAYQKAVKDGAD--VIDCSVQMSKDGVPFCLDSINLINSTTVATSKFSNRATTV-PEIGSTS 77 (300)
T ss_pred CeEEecCCcCCCCCcchHHHHHHHHHcCCC--EEEEeeeEcCCCCEEEeccccccCcccCCccccccccccc-ccccccC
Confidence 679999999999999999999999999999 999999999999999999999999999987 777777763 3333467
Q ss_pred ccccccCCHHhhcccccccccc------CCCCCCCCCCcccccHHHHHHhhCC---CceEeeccCchhhh-hcCCcHHHH
Q 004721 171 GWFSIDYTLNDLSNIILNQGVY------SRTDKFDGNGFQILTVQDMARQIKP---PGLWLNIQHDAFYA-QHNLSMRSF 240 (733)
Q Consensus 171 g~~v~d~T~~eL~~l~~~~~~~------~~~~~~~g~~~~iptL~e~l~~~~~---~~l~iEiK~~~~~~-~~~~~~~~~ 240 (733)
||++.|+||+||++|+++..+. ++...|.+ +++||||+|+|++++. .+++||||.+.... ..+..+++.
T Consensus 78 ~~~v~d~t~~eL~~l~~~~~~~~~~~~~~~~~~~~~-~~~iptL~Evl~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~ 156 (300)
T cd08604 78 GIFTFDLTWSEIQTLKPAISNPYSVTGLFRNPANKN-AGKFLTLSDFLDLAKNKSLSGVLINVENAAYLAEKKGLDVVDA 156 (300)
T ss_pred ceeeecCcHHHHhhCccCCcCcccccCcCCCcccCC-CCCCCCHHHHHHHHHhcCCceEEEEeeccchhhhccCccHHHH
Confidence 8899999999999999875322 23345665 6899999999999864 47999999765432 223468899
Q ss_pred HHHHHhhcCC-------ceeccCCHHHHHHHHHhcCCCcccchhhhcCCCccCCCCCcchhHHHhhHHHHHhhcccccCC
Q 004721 241 VLSVSRSVVV-------NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTFASGILVP 313 (733)
Q Consensus 241 v~~~l~~~~~-------~~i~SF~~~~l~~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~i~~~ 313 (733)
++++++++++ ++|+||+++.|++++++. +.++++ +..... ..+. ...+..+..++++++++
T Consensus 157 v~~~l~~~~~~~~~~~~v~i~SF~~~~L~~~~~~~---~~~~~~-l~~~~~------~~~~--~~~~~~~~~~a~~v~~~ 224 (300)
T cd08604 157 VLDALTNAGYDNQTAQKVLIQSTDSSVLAAFKKQI---SYERVY-VVDETI------RDAS--DSSIEEIKKFADAVVID 224 (300)
T ss_pred HHHHHHHcCCCCCCCCeEEEEcCCHHHHHHHHhcc---CCceEE-EecCcc------cccC--hhHHHHHHHhccEEEeC
Confidence 9999999876 389999999999999987 356665 322110 0110 11234555678888888
Q ss_pred ccccccCCCccCCCCChHHHHHHHHcCCeEEEeecCCC-CCcccCCCCChHHH-HHHHHhcCCcccceEEecCCCCcccc
Q 004721 314 KDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFAND-IPISFNYSYDPLTE-YLSFIDNGDFSVDGVLSDFPLTPSAA 391 (733)
Q Consensus 314 ~~~i~~~~~~~~~~~~~~~v~~ah~~Gl~V~~WTvn~~-~~~~~~~~~d~~~~-~~~l~~~G~~~VDgIiTD~P~~~~~~ 391 (733)
...+.+.. ...+...+++|++||++|++|++||||++ ...++.|..|+.++ ++++.++| |||||||+|++++++
T Consensus 225 ~~~~~~~~-~~~~~~~~~~v~~a~~~Gl~v~vwTvn~~~~~~~~~~~~~~~~~~~~~~~~~G---VdgIiTD~P~~~~~~ 300 (300)
T cd08604 225 RGSVFPVS-TSFLTRQTNVVEKLQSANLTVYVEVLRNEFVSLAFDFFADPTVEINSYVQGAG---VDGFITEFPATAARY 300 (300)
T ss_pred hhhccccc-CCcccCchHHHHHHHHCCCEEEEEEecCCccccchhccCCHHHHHHHHHHHcC---CCEEEecCchhhhcC
Confidence 77665432 12222345899999999999999999986 45667777777545 44566889 999999999988653
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) repeat 2 present in glycerophosphodiester phosphodiesterase (GP-GDE)-like protein SHV3 and SHV3-like proteins (SVLs), which may play important an role in cell wall organization. The prototype of this family is a glycosylphosphatidylinositol (GPI) anchored protein SHV3 encoded by shaven3 (shv3) gene from Arabidopsis thaliana. Members in this family show sequence homology to bacterial GP-GDEs (EC 3.1.4.46) that catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Both, SHV3 and SVLs, have two tandemly repeated GDPD domains whose biochemical functions remain unclear. The residues essential for interactions with the substrates and calcium ions in bacterial GP |
| >cd08600 GDPD_EcGlpQ_like Glycerophosphodiester phosphodiesterase domain of Escherichia coli (GlpQ) and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-48 Score=412.11 Aligned_cols=279 Identities=26% Similarity=0.328 Sum_probs=209.3
Q ss_pred CEEEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCCccccCccccccccccccccCCCCCCc
Q 004721 92 PFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPG 171 (733)
Q Consensus 92 ~~viaHRG~~~~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l~rtt~~~~~~~~~~~~~~~~g~~~~g 171 (733)
|+||||||+++.+||||++||++|+++|+| +||||||+||||++||+||.+|+||||+.+.++.+++. + ++
T Consensus 1 ~lviAHRG~s~~~PENTl~Af~~A~~~Gad--~iE~DV~lTkDg~lVv~HD~~l~rtt~~~~~~~~~~~~---~----g~ 71 (318)
T cd08600 1 KIIIAHRGASGYLPEHTLEAKALAYAQGAD--YLEQDVVLTKDDKLVVIHDHYLDNVTNVAEKFPDRKRK---D----GR 71 (318)
T ss_pred CeEEEcCCCCCCCCccHHHHHHHHHHcCCC--EEEeeeeECcCCcEEEeCCchhhccCCccccccccccc---C----Cc
Confidence 689999999999999999999999999999 99999999999999999999999999999888777654 2 23
Q ss_pred cccccCCHHhhccccccccccCC--------CCCC---CCCCcccccHHHHHHhhC--------CCceEeeccCchhhhh
Q 004721 172 WFSIDYTLNDLSNIILNQGVYSR--------TDKF---DGNGFQILTVQDMARQIK--------PPGLWLNIQHDAFYAQ 232 (733)
Q Consensus 172 ~~v~d~T~~eL~~l~~~~~~~~~--------~~~~---~g~~~~iptL~e~l~~~~--------~~~l~iEiK~~~~~~~ 232 (733)
|+|.++||+||++|+++.||... +..| .+ +++||||+|+|++++ .++++||||.+....+
T Consensus 72 ~~v~dlT~aEL~~ld~g~~f~~~~~~~~~~~~~~~~~~~~-~~~IptL~evl~~~~~~~~~~~~~~~l~iEiK~~~~~~~ 150 (318)
T cd08600 72 YYVIDFTLDELKSLSVTERFDIENGKKVQVYPNRFPLWKS-DFKIHTLEEEIELIQGLNKSTGKNVGIYPEIKAPWFHHQ 150 (318)
T ss_pred eeEeeCcHHHHhhCCCCCCcccccccccccccccCcccCC-CCccCCHHHHHHHHHHhhhhcCCcceEEEeecCchhhhh
Confidence 68999999999999999987432 1122 12 579999999999874 4679999997654433
Q ss_pred cCCcHHHHHHHHHhhcCC------ceeccCCHHHHHHHHH-hcCC--CcccchhhhcCCCccCC-------CCCcchhHH
Q 004721 233 HNLSMRSFVLSVSRSVVV------NYISSPEVNFLRSIAA-RFRP--SMTKLVFRFLGKSEIEP-------TTNQTYGSL 296 (733)
Q Consensus 233 ~~~~~~~~v~~~l~~~~~------~~i~SF~~~~l~~l~~-~~p~--~~~~~~~~l~~~~~~~~-------~~~~~~~~~ 296 (733)
.+.++++.++++++++++ ++|+||++++|+++++ +.|. .++++++++........ ..+..|..+
T Consensus 151 ~~~~~~~~v~~~l~~~~~~~~~~~v~i~SF~~~~L~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (318)
T cd08600 151 EGKDIAAATLEVLKKYGYTSKNDKVYLQTFDPNELKRIKNELLPKMGMDLKLVQLIAYTDWGETQEKDPGGWVNYDYDWM 230 (318)
T ss_pred ccccHHHHHHHHHHHcCCCCCCCeEEEEeCCHHHHHHHHHhhCccccCCcceEEEeccCCCCcccccccCCccccchhhh
Confidence 344689999999999986 5999999999999997 6760 02566653321111100 011234444
Q ss_pred H--hhHHHHHhhcccccCCccccccCCCccCCCCChHHHHHHHHcCCeEEEeecCCCCCcccCCCCChHHHH-H-HHHhc
Q 004721 297 L--KNLTFIKTFASGILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEY-L-SFIDN 372 (733)
Q Consensus 297 ~--~~l~~~~~~a~~i~~~~~~i~~~~~~~~~~~~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~~~-~-~l~~~ 372 (733)
. .++..++.++++++|++..+.+.+.......++++|++||++|+.|++||||++....+. .+. .++ . .++++
T Consensus 231 ~~~~~l~~~~~~a~~i~~~~~~l~~~~~~~~~~~~~~~V~~ah~~Gl~V~~wTvn~~~~~~~~--~~~-~~~~~~~l~~~ 307 (318)
T cd08600 231 FTKGGLKEIAKYADGVGPWYSMIIEEKSSKGNIVLTDLVKDAHEAGLEVHPYTVRKDALPEYA--KDA-DQLLDALLNKA 307 (318)
T ss_pred cCHHHHHHHHHhheeccCCHHHcccccCCCCccChHHHHHHHHHcCCEEEEEeccCCcccccc--CCH-HHHHHHHHHhc
Confidence 2 256677778999999988765432222233457899999999999999999987322211 122 233 2 25788
Q ss_pred CCcccceEEecCCC
Q 004721 373 GDFSVDGVLSDFPL 386 (733)
Q Consensus 373 G~~~VDgIiTD~P~ 386 (733)
| |||||||+|+
T Consensus 308 G---VDGiiTD~P~ 318 (318)
T cd08600 308 G---VDGVFTDFPD 318 (318)
T ss_pred C---CcEEEcCCCC
Confidence 9 9999999996
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli periplasmic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), GlpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two different GP-GDEs. GlpQ gene from the E. coli glp operon codes for a periplasmic phosphodiesterase GlpQ, which is the prototype of this family. GlpQ is a dimeric enzyme that hydrolyzes periplasmic glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GP |
| >cd08580 GDPD_Rv2277c_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial protein Rv2277c and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-47 Score=393.29 Aligned_cols=245 Identities=18% Similarity=0.190 Sum_probs=184.2
Q ss_pred CEEEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCCccccCccccccccccccccCCCCCCc
Q 004721 92 PFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPG 171 (733)
Q Consensus 92 ~~viaHRG~~~~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l~rtt~~~~~~~~~~~~~~~~g~~~~g 171 (733)
|+||||||+++.+||||++||+.|+++|+| +||+|||+||||++||+||.+|+|+||+.+
T Consensus 1 p~viaHRG~~~~~PENTl~Af~~A~~~G~d--~iE~DV~lTkDg~lVv~HD~~l~R~t~~~g------------------ 60 (263)
T cd08580 1 PLIVAHRGGTADAPENTLLAISKALANGAD--AIWLTVQLSKDGVPVLYRPSDLKSLTNGSG------------------ 60 (263)
T ss_pred CeEEEcCCCCCCCCccHHHHHHHHHHcCCC--EEEEEeEECCCCCEEEeCCCchhcccCCCC------------------
Confidence 679999999999999999999999999999 999999999999999999999999999876
Q ss_pred cccccCCHHhhccccccccccCC-CCCCCCCCcccccHHHHHHhhCCCceEeeccCchhhhhcCCcHHHHHHHHHhhcCC
Q 004721 172 WFSIDYTLNDLSNIILNQGVYSR-TDKFDGNGFQILTVQDMARQIKPPGLWLNIQHDAFYAQHNLSMRSFVLSVSRSVVV 250 (733)
Q Consensus 172 ~~v~d~T~~eL~~l~~~~~~~~~-~~~~~g~~~~iptL~e~l~~~~~~~l~iEiK~~~~~~~~~~~~~~~v~~~l~~~~~ 250 (733)
.|.++||+||++|+++.||... +..|.+.+++||||+|+|++++...++||||.+.. ..+++.++++|+++++
T Consensus 61 -~v~~~t~~el~~ld~g~~~~~~~~~~~~~~~~~iPtL~evl~~~~~~~l~iEiK~~~~-----~~~~~~v~~~i~~~~~ 134 (263)
T cd08580 61 -AVSAYTAAQLATLNAGYNFKPEGGYPYRGKPVGIPTLEQVLRAFPDTPFILDMKSLPA-----DPQAKAVARVLERENA 134 (263)
T ss_pred -ChhhCcHHHHhcCCCccccccccCcccCCCCCcCccHHHHHHhhcCCeEEEEECCCCc-----HHHHHHHHHHHHhcCC
Confidence 7999999999999999987432 22355545799999999999988889999996532 1578899999999886
Q ss_pred ---ceeccCCHHHHHHHHHhcCCCc-------ccchhhhcCCCccCCC-CCcchhHH-----HhhHHHHHhhcccccCCc
Q 004721 251 ---NYISSPEVNFLRSIAARFRPSM-------TKLVFRFLGKSEIEPT-TNQTYGSL-----LKNLTFIKTFASGILVPK 314 (733)
Q Consensus 251 ---~~i~SF~~~~l~~l~~~~p~~~-------~~~~~~l~~~~~~~~~-~~~~~~~~-----~~~l~~~~~~a~~i~~~~ 314 (733)
++|+||+++.|++++++.| + ....+ +......... ........ ...+.....++.+...
T Consensus 135 ~~~v~v~SF~~~~l~~~~~~~p--~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 209 (263)
T cd08580 135 WSRVRIYSTNADYQDALAPYPQ--ARLFESRDVTRTR-LANVAMAHQCDLPPDSGAWAGFELRRKVTVVETFTLGEGR-- 209 (263)
T ss_pred CCCEEEEECCHHHHHHHHhcCc--ccccccHHHHHHH-HHhhhcccccccCccchhhccccccccchheeeecccccc--
Confidence 4999999999999999987 2 22222 1110000000 00000000 0001111111111111
Q ss_pred cccccCCCccCCCCChHHHHHHHHc-CCeEEEeecCCCCCcccCCCCChHHHHHHHHhcCCcccceEEecCCCCc
Q 004721 315 DYIWPVDESLYLLPHTTIVLDAHKE-RLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTP 388 (733)
Q Consensus 315 ~~i~~~~~~~~~~~~~~~v~~ah~~-Gl~V~~WTvn~~~~~~~~~~~d~~~~~~~l~~~G~~~VDgIiTD~P~~~ 388 (733)
+ + ..+...++++|+.+|++ |++|++||||++ ++|++|+++| |||||||+|+.+
T Consensus 210 --~-~---~~~~l~t~~~V~~~h~~~gl~V~~WTVN~~------------~~~~~l~~~G---VDgIiTD~P~~~ 263 (263)
T cd08580 210 --S-P---VQATLWTPAAVDCFRRNSKVKIVLFGINTA------------DDYRLAKCLG---ADAVMVDSPAAM 263 (263)
T ss_pred --c-c---cccccCCHHHHHHHHhcCCcEEEEEEeCCH------------HHHHHHHHcC---CCEEEeCCcccC
Confidence 0 0 01234468999999999 999999999875 8999999999 999999999974
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial protein Rv2277c and similar proteins. Members in this subfamily are bacterial homologous of mammalian GDE4, a transmembrane protein whose cellular function has not yet been elucidated. |
| >cd08560 GDPD_EcGlpQ_like_1 Glycerophosphodiester phosphodiesterase domain similar to Escherichia coli periplasmic phosphodiesterase (GlpQ) include uncharacterized proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-46 Score=402.74 Aligned_cols=302 Identities=15% Similarity=0.203 Sum_probs=222.9
Q ss_pred CcCCcceEEecCCCCCCCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeecc-ccccccccCCCc-CCCccccc-cc
Q 004721 403 SKSANLLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFI-NLINSTNAAQSK-FNSITTTI-PE 479 (733)
Q Consensus 403 ~~~~~~~iIaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~-~L~rtt~v~~~~-~~~r~~~~-~~ 479 (733)
...+.++||||||+++.+||||++||+.|+++|||+||+|||+||||++||+||. +|+||||+...+ |++|+++. .+
T Consensus 12 ~~~~~~~iIAHRGasg~~PEnTl~Af~~Ai~~Gad~IE~DV~lTkDg~lVV~HD~~~L~rtTnv~~~pe~a~r~~~~~~~ 91 (356)
T cd08560 12 PFRKTDFSIGHRGAPLQFPEHTRESYEAAARMGAGILECDVTFTKDRELVCRHSQCDLHTTTNILAIPELAAKCTQPFTP 91 (356)
T ss_pred CCCCCceEEEcCCCCCCCCcchHHHHHHHHHcCCCEEEEEeeEccCCcEEEECCCccccCccCCccccchhhhccccccc
Confidence 3346789999999999999999999999999999999999999999999999997 899999987644 77777653 23
Q ss_pred ccc----cCcccccccCHHHHhccCcccc--CCCc--------cccccCCcCCCCCccccCHHHHHHHHHhcCCCceEEE
Q 004721 480 IMA----GSGIFSFSLIWDEIQTLIPQIS--NPYF--------KFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLI 545 (733)
Q Consensus 480 ~~~----~~g~~i~d~T~~EL~~L~~~~~--~~~~--------~~~~~~~~~~~g~~~IptLeEvL~~~~~~~~~~~l~i 545 (733)
+.. ..+++|.|+|++||++|++... .+++ ++..++++.|.++++||||+|+|++++.. + ++++|
T Consensus 92 g~~~~~~~~~~~v~d~TlaELk~L~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~IPTL~Evl~lv~~~-~-v~l~i 169 (356)
T cd08560 92 ANATKPASAECCTSDITLAEFKSLCGKMDASNPSATTPEEYQNGTPDWRTDLYATCGTLMTHKESIALFKSL-G-VKMTP 169 (356)
T ss_pred cccccccccCcchhhCcHHHHhcCCCccccccccccccccccccccccccccccCCCCCCCHHHHHHHHHhc-C-ceEEE
Confidence 332 2345899999999999987532 1111 12234555666668999999999999875 3 48999
Q ss_pred EecchhHHHhhcC----CcHHHHHHHHHHHcCCCCCCCceEEEEeCCHHHHHHHHhc-cCceE--EEEeecc-cch---h
Q 004721 546 SIENAVYLAEKQG----MSVTNSVMEALGNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYEL--VYKVKEN-IRD---A 614 (733)
Q Consensus 546 EiK~~~~~~~~~~----~~~~~~v~~~l~~~~~~~~~~~~vii~Sfd~~~L~~lk~~-p~~~~--~~l~~~~-~~~---~ 614 (733)
|||.+....+..+ ..++++++++++++++.. ++|+||||+++.|+++++. |++++ +++.+.. ..+ .
T Consensus 170 EiK~~~~~~~~~g~~~~~~~~~~l~~~l~~~g~~~---~~v~iqSFd~~~L~~~~~~~p~~~~~l~~l~~~~~~~~~~~~ 246 (356)
T cd08560 170 ELKSPSVPMPFDGNYTQEDYAQQMIDEYKEAGVPP---SRVWPQSFNLDDIFYWIKNEPDFGRQAVYLDDRDDTADFPAT 246 (356)
T ss_pred EeCCCcccccccccccHHHHHHHHHHHHHHcCCCC---CCEEEECCCHHHHHHHHHhCCCCCeeEEEEccCCcccccccc
Confidence 9997764221111 158899999999999763 5999999999999999888 97765 4443321 000 0
Q ss_pred hhHHHHHH-HHHHhHhcCCCcccccCCccccccchHHHHHHHHCCCcEEEEecCCccccc--c-ccc---------CCCh
Q 004721 615 LNQTIEDI-KKFADSVVLSKESVYPLNSAFITSATDIVQRLQSFKLPVYVETFSNEFVSQ--A-WDF---------FSDP 681 (733)
Q Consensus 615 ~~~~l~~i-~~~a~~i~~~~~~i~~~~~~~l~~~~~~v~~~~~~Gl~v~~wTvn~~~~~~--~-~~~---------~~d~ 681 (733)
-...++.+ +.++++|+|+...+.+.........+++|+.+|++|++|++||++++...+ + +.| .+|.
T Consensus 247 ~~~~l~~i~a~~a~~i~P~~~~l~~~~~~~~~~~~~~v~~Ah~~GL~V~~WTvr~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (356)
T cd08560 247 WSPSMDELKARGVNIIAPPIWMLVDPDENGKIVPSEYAKAAKAAGLDIITWTLERSGPLASGGGWYYQTIEDVINNDGDM 326 (356)
T ss_pred HHHHHHHHHhCCccEecCchhhccccccccccCCHHHHHHHHHcCCEEEEEEeecCcccccCcccccccccccccccccH
Confidence 11235555 456778888776665542222235689999999999999999998764433 3 233 3344
Q ss_pred HHHHHHHHhhcCcCEEEeCChHHHHHHH
Q 004721 682 TVEINTYYEGAGIDGVITEFPMTAARYR 709 (733)
Q Consensus 682 ~~e~~~~l~~~GVdgIiTD~P~~~~~~l 709 (733)
..++..++.++|||||+||+|++...|.
T Consensus 327 ~~~~~~~~~~~GvDGvftD~p~~~~~~~ 354 (356)
T cd08560 327 YNVLDVLARDVGILGIFSDWPATVTYYA 354 (356)
T ss_pred HHHHHHHHHhcCCCEEEccCCCceeEec
Confidence 5566666568999999999999876553
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and their hypothetical homologs. Members in this subfamily show high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. |
| >cd08559 GDPD_periplasmic_GlpQ_like Periplasmic glycerophosphodiester phosphodiesterase domain (GlpQ) and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-46 Score=398.51 Aligned_cols=274 Identities=30% Similarity=0.394 Sum_probs=204.8
Q ss_pred CEEEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCCccccCccccccccccccccCCCCCCc
Q 004721 92 PFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPG 171 (733)
Q Consensus 92 ~~viaHRG~~~~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l~rtt~~~~~~~~~~~~~~~~g~~~~g 171 (733)
|+||||||+++.+||||++||+.|++.||| +||||||+||||++||+||++|+|+||+...++.. |....|
T Consensus 1 p~iiAHRG~~~~~PENTl~Af~~A~~~Gad--~iE~DV~lTkDg~lVv~HD~~l~r~t~~~~~~~~~-------~~~~~~ 71 (296)
T cd08559 1 PLVIAHRGASGYAPEHTLAAYALAIEMGAD--YIEQDLVMTKDGVLVARHDPTLDRTTNVAEHFPFR-------GRKDTG 71 (296)
T ss_pred CeEEEeCCcCCCCccchHHHHHHHHHhCCC--EEEEeeEEccCCCEEEeccchhhcCCCcccccccc-------ccCCCC
Confidence 689999999999999999999999999999 99999999999999999999999999988544332 334455
Q ss_pred cccccCCHHhhccccccccccCC----CCCCCCCCcccccHHHHHHhhCC--------CceEeeccCchhhhhcCCcHHH
Q 004721 172 WFSIDYTLNDLSNIILNQGVYSR----TDKFDGNGFQILTVQDMARQIKP--------PGLWLNIQHDAFYAQHNLSMRS 239 (733)
Q Consensus 172 ~~v~d~T~~eL~~l~~~~~~~~~----~~~~~g~~~~iptL~e~l~~~~~--------~~l~iEiK~~~~~~~~~~~~~~ 239 (733)
+.|.++||+||++++++.|+... ...+.. +++||||+|+|++++. ++++||||.+......+..+++
T Consensus 72 ~~v~~~t~~eL~~l~~~~~~~~~~~~~~~~~~~-~~~iptL~evl~~~~~~~~~~~~~~~l~IEiK~~~~~~~~~~~~~~ 150 (296)
T cd08559 72 YFVIDFTLAELKTLRAGSWFNQRYPERAPSYYG-GFKIPTLEEVIELAQGLNKSTGRNVGIYPETKHPTFHKQEGPDIEE 150 (296)
T ss_pred eeeecCcHHHHhcCCCCCcccccccccCccccC-CCCcCCHHHHHHHHHhhhhccCCcceEEEEecChhhhhhcCCCHHH
Confidence 68999999999999999875321 111122 4899999999999854 6799999976543233456899
Q ss_pred HHHHHHhhcCC------ceeccCCHHHHHHHHHhcCCCcccchhhhcCCCccCCCCCcchhHHH--hhHHHHHhhccccc
Q 004721 240 FVLSVSRSVVV------NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLL--KNLTFIKTFASGIL 311 (733)
Q Consensus 240 ~v~~~l~~~~~------~~i~SF~~~~l~~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~l~~~~~~a~~i~ 311 (733)
.|+++|+++++ ++|+||++++|++++++.| +.++++++.............|..+. ..+..++..+.+++
T Consensus 151 ~v~~~l~~~~~~~~~~~v~i~SF~~~~L~~~r~~~p--~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 228 (296)
T cd08559 151 KLLEVLKKYGYTGKNDPVFIQSFEPESLKRLRNETP--DIPLVQLIDYGDWAETDKKYTYAWLTTDAGLKEIAKYADGIG 228 (296)
T ss_pred HHHHHHHHcCCCCCCCCEEEecCCHHHHHHHHHhCC--CCcEEEEecCCCCCccccccccchhcCHHHHHHHHHHhhhhC
Confidence 99999999864 4899999999999999998 77888743221111000001122221 13444555677888
Q ss_pred CCccccccCCCccCCCCChHHHHHHHHcCCeEEEeecCCC-CCcccCCCCChHHHHHHHHhc-CCcccceEEecCC
Q 004721 312 VPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFAND-IPISFNYSYDPLTEYLSFIDN-GDFSVDGVLSDFP 385 (733)
Q Consensus 312 ~~~~~i~~~~~~~~~~~~~~~v~~ah~~Gl~V~~WTvn~~-~~~~~~~~~d~~~~~~~l~~~-G~~~VDgIiTD~P 385 (733)
+.+..+.... ......++++|++||++|++|++||||++ .+..+ +..++|++++++ | |||||||+|
T Consensus 229 ~~~~~~~~~~-~~~~~~~~~~v~~a~~~Gl~v~~WTvn~~~~~~~~----~~~~~~~~l~~~~G---VdgIiTD~P 296 (296)
T cd08559 229 PWKSLIIPED-SNGLLVPTDLVKDAHKAGLLVHPYTFRNENLFLAP----DFKQDMDALYNAAG---VDGVFTDFP 296 (296)
T ss_pred CCHHhccccc-cccccCchHHHHHHHHcCCEEEEEEecCccccccc----ccccCHHHHHHHhC---CCEEEcCCC
Confidence 8776654221 11223347899999999999999999984 12111 223789999998 9 999999998
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in bacterial and eukaryotic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) similar to Escherichia coli periplasmic phosphodiesterase GlpQ. GP-GDEs are involved in glycerol metabolism and catalyze the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. In E. coli, there are two major G3P uptake systems: Glp and Ugp, which contain genes coding for two different GP-GDEs. GlpQ gene from the glp operon codes for a periplasmic phosphodiesterase GlpQ. GlpQ is a dimeric enzyme that hydrolyzes periplasmic glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG), glycerophosphoinositol (GPI), |
| >cd08559 GDPD_periplasmic_GlpQ_like Periplasmic glycerophosphodiester phosphodiesterase domain (GlpQ) and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-46 Score=396.02 Aligned_cols=278 Identities=29% Similarity=0.353 Sum_probs=205.4
Q ss_pred ceEEecCCCCCCCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeeccccccccccCCCcCCCcccccccccccCccc
Q 004721 408 LLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIF 487 (733)
Q Consensus 408 ~~iIaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L~rtt~v~~~~~~~r~~~~~~~~~~~g~~ 487 (733)
|+||||||+++.+||||++||++|++.|||+||||||+||||++||+||.+|+|+||...... . ++....|..
T Consensus 1 p~iiAHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDg~lVv~HD~~l~r~t~~~~~~~-~------~~~~~~~~~ 73 (296)
T cd08559 1 PLVIAHRGASGYAPEHTLAAYALAIEMGADYIEQDLVMTKDGVLVARHDPTLDRTTNVAEHFP-F------RGRKDTGYF 73 (296)
T ss_pred CeEEEeCCcCCCCccchHHHHHHHHHhCCCEEEEeeEEccCCCEEEeccchhhcCCCcccccc-c------cccCCCCee
Confidence 679999999999999999999999999999999999999999999999999999999542110 0 011122338
Q ss_pred ccccCHHHHhccCccccCCCccccccCCcCCCCCccccCHHHHHHHHHhcC-----CCceEEEEecchhHHHhhcCCcHH
Q 004721 488 SFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNAN-----SLSGVLISIENAVYLAEKQGMSVT 562 (733)
Q Consensus 488 i~d~T~~EL~~L~~~~~~~~~~~~~~~~~~~~g~~~IptLeEvL~~~~~~~-----~~~~l~iEiK~~~~~~~~~~~~~~ 562 (733)
|.++|++||++++++.|. ...+..+.+.+..+++||||+|+|++++.++ + ++++||||.+.... ..+..++
T Consensus 74 v~~~t~~eL~~l~~~~~~--~~~~~~~~~~~~~~~~iptL~evl~~~~~~~~~~~~~-~~l~IEiK~~~~~~-~~~~~~~ 149 (296)
T cd08559 74 VIDFTLAELKTLRAGSWF--NQRYPERAPSYYGGFKIPTLEEVIELAQGLNKSTGRN-VGIYPETKHPTFHK-QEGPDIE 149 (296)
T ss_pred eecCcHHHHhcCCCCCcc--cccccccCccccCCCCcCCHHHHHHHHHhhhhccCCc-ceEEEEecChhhhh-hcCCCHH
Confidence 999999999999998652 1112222222333589999999999998732 2 48999999865432 1235789
Q ss_pred HHHHHHHHHcCCCCCCCceEEEEeCCHHHHHHHHhc-cCceEEEEeecccch-----------hhhHHHHHHHHHHhHhc
Q 004721 563 NSVMEALGNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRD-----------ALNQTIEDIKKFADSVV 630 (733)
Q Consensus 563 ~~v~~~l~~~~~~~~~~~~vii~Sfd~~~L~~lk~~-p~~~~~~l~~~~~~~-----------~~~~~l~~i~~~a~~i~ 630 (733)
+.|+++|+++++.. ..++|+|+||++++|+++|++ |++++++++...... .....+..++.++++++
T Consensus 150 ~~v~~~l~~~~~~~-~~~~v~i~SF~~~~L~~~r~~~p~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 228 (296)
T cd08559 150 EKLLEVLKKYGYTG-KNDPVFIQSFEPESLKRLRNETPDIPLVQLIDYGDWAETDKKYTYAWLTTDAGLKEIAKYADGIG 228 (296)
T ss_pred HHHHHHHHHcCCCC-CCCCEEEecCCHHHHHHHHHhCCCCcEEEEecCCCCCccccccccchhcCHHHHHHHHHHhhhhC
Confidence 99999999998751 114899999999999999999 999999998653211 12233555555777777
Q ss_pred CCCcccccCCccccccchHHHHHHHHCCCcEEEEecCCcccccccccCCChHHHHHHHHhhc-CcCEEEeCCh
Q 004721 631 LSKESVYPLNSAFITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGA-GIDGVITEFP 702 (733)
Q Consensus 631 ~~~~~i~~~~~~~l~~~~~~v~~~~~~Gl~v~~wTvn~~~~~~~~~~~~d~~~e~~~~l~~~-GVdgIiTD~P 702 (733)
+....+..........++++|+.+|++|++|++||||++...++.+|. .++.+++ ++ ||||||||+|
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~v~~a~~~Gl~v~~WTvn~~~~~~~~~~~----~~~~~l~-~~~GVdgIiTD~P 296 (296)
T cd08559 229 PWKSLIIPEDSNGLLVPTDLVKDAHKAGLLVHPYTFRNENLFLAPDFK----QDMDALY-NAAGVDGVFTDFP 296 (296)
T ss_pred CCHHhccccccccccCchHHHHHHHHcCCEEEEEEecCcccccccccc----cCHHHHH-HHhCCCEEEcCCC
Confidence 754443321111223458999999999999999999994222222221 2788887 88 9999999998
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in bacterial and eukaryotic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) similar to Escherichia coli periplasmic phosphodiesterase GlpQ. GP-GDEs are involved in glycerol metabolism and catalyze the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. In E. coli, there are two major G3P uptake systems: Glp and Ugp, which contain genes coding for two different GP-GDEs. GlpQ gene from the glp operon codes for a periplasmic phosphodiesterase GlpQ. GlpQ is a dimeric enzyme that hydrolyzes periplasmic glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG), glycerophosphoinositol (GPI), |
| >cd08600 GDPD_EcGlpQ_like Glycerophosphodiester phosphodiesterase domain of Escherichia coli (GlpQ) and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-45 Score=394.48 Aligned_cols=284 Identities=24% Similarity=0.280 Sum_probs=209.7
Q ss_pred ceEEecCCCCCCCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeeccccccccccCCCcCCCcccccccccccCccc
Q 004721 408 LLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIF 487 (733)
Q Consensus 408 ~~iIaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L~rtt~v~~~~~~~r~~~~~~~~~~~g~~ 487 (733)
|+||||||+++.+||||++||++|++.|+|+||||||+||||++||+||.+|+|+||++. .|++|+.. .+.+ +
T Consensus 1 ~lviAHRG~s~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDg~lVv~HD~~l~rtt~~~~-~~~~~~~~-----~g~~-~ 73 (318)
T cd08600 1 KIIIAHRGASGYLPEHTLEAKALAYAQGADYLEQDVVLTKDDKLVVIHDHYLDNVTNVAE-KFPDRKRK-----DGRY-Y 73 (318)
T ss_pred CeEEEcCCCCCCCCccHHHHHHHHHHcCCCEEEeeeeECcCCcEEEeCCchhhccCCccc-cccccccc-----CCce-e
Confidence 579999999999999999999999999999999999999999999999999999999664 35555432 1444 7
Q ss_pred ccccCHHHHhccCccccCCCc-cc----cccCCcCCCCCccccCHHHHHHHHHhcC----CCceEEEEecchhHHHhhcC
Q 004721 488 SFSLIWDEIQTLIPQISNPYF-KF----KLFRNPKNKNAGKFMKLSDFLEMAKNAN----SLSGVLISIENAVYLAEKQG 558 (733)
Q Consensus 488 i~d~T~~EL~~L~~~~~~~~~-~~----~~~~~~~~~g~~~IptLeEvL~~~~~~~----~~~~l~iEiK~~~~~~~~~~ 558 (733)
|.++|++||++|+++.|.+.. +. +..+.+...++++||||+|+|++++... ..++++||||.+.... ..+
T Consensus 74 v~dlT~aEL~~ld~g~~f~~~~~~~~~~~~~~~~~~~~~~~IptL~evl~~~~~~~~~~~~~~~l~iEiK~~~~~~-~~~ 152 (318)
T cd08600 74 VIDFTLDELKSLSVTERFDIENGKKVQVYPNRFPLWKSDFKIHTLEEEIELIQGLNKSTGKNVGIYPEIKAPWFHH-QEG 152 (318)
T ss_pred EeeCcHHHHhhCCCCCCcccccccccccccccCcccCCCCccCCHHHHHHHHHHhhhhcCCcceEEEeecCchhhh-hcc
Confidence 999999999999998763210 00 0111111123589999999999997621 1148999999765322 123
Q ss_pred CcHHHHHHHHHHHcCCCCCCCceEEEEeCCHHHHHHHHh-c-c----CceEEEEeecc-cc----------------h-h
Q 004721 559 MSVTNSVMEALGNAGYNKQTALKVMIQSTDSSVLMKLRE-K-T----SYELVYKVKEN-IR----------------D-A 614 (733)
Q Consensus 559 ~~~~~~v~~~l~~~~~~~~~~~~vii~Sfd~~~L~~lk~-~-p----~~~~~~l~~~~-~~----------------~-~ 614 (733)
..+++.++++|+++++... .++|+|+||++++|+.+|+ . | ++++++++... .. . .
T Consensus 153 ~~~~~~v~~~l~~~~~~~~-~~~v~i~SF~~~~L~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (318)
T cd08600 153 KDIAAATLEVLKKYGYTSK-NDKVYLQTFDPNELKRIKNELLPKMGMDLKLVQLIAYTDWGETQEKDPGGWVNYDYDWMF 231 (318)
T ss_pred ccHHHHHHHHHHHcCCCCC-CCeEEEEeCCHHHHHHHHHhhCccccCCcceEEEeccCCCCcccccccCCccccchhhhc
Confidence 4689999999999998521 1489999999999999996 7 9 99999998521 10 0 0
Q ss_pred hhHHHHHHHHHHhHhcCCCcccccCCc-cccccchHHHHHHHHCCCcEEEEecCCcccccccccCCChHHHHHHHHhhcC
Q 004721 615 LNQTIEDIKKFADSVVLSKESVYPLNS-AFITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAG 693 (733)
Q Consensus 615 ~~~~l~~i~~~a~~i~~~~~~i~~~~~-~~l~~~~~~v~~~~~~Gl~v~~wTvn~~~~~~~~~~~~d~~~e~~~~l~~~G 693 (733)
++..+..++.+|++++++...+.+... .+...++++|+.+|++|+.|++||||++... .|..+.......++.++|
T Consensus 232 ~~~~l~~~~~~a~~i~~~~~~l~~~~~~~~~~~~~~~V~~ah~~Gl~V~~wTvn~~~~~---~~~~~~~~~~~~~l~~~G 308 (318)
T cd08600 232 TKGGLKEIAKYADGVGPWYSMIIEEKSSKGNIVLTDLVKDAHEAGLEVHPYTVRKDALP---EYAKDADQLLDALLNKAG 308 (318)
T ss_pred CHHHHHHHHHhheeccCCHHHcccccCCCCccChHHHHHHHHHcCCEEEEEeccCCccc---cccCCHHHHHHHHHHhcC
Confidence 223466777888999887765544211 1223467999999999999999999998521 223333322233234899
Q ss_pred cCEEEeCChH
Q 004721 694 IDGVITEFPM 703 (733)
Q Consensus 694 VdgIiTD~P~ 703 (733)
|||||||+|+
T Consensus 309 VDGiiTD~P~ 318 (318)
T cd08600 309 VDGVFTDFPD 318 (318)
T ss_pred CcEEEcCCCC
Confidence 9999999995
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli periplasmic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), GlpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two different GP-GDEs. GlpQ gene from the E. coli glp operon codes for a periplasmic phosphodiesterase GlpQ, which is the prototype of this family. GlpQ is a dimeric enzyme that hydrolyzes periplasmic glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GP |
| >cd08610 GDPD_GDE6 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE6 and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-46 Score=393.59 Aligned_cols=251 Identities=11% Similarity=0.038 Sum_probs=192.3
Q ss_pred cccCCCCCEEEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCCccccCcccccccccccccc
Q 004721 85 QTLTGDPPFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLV 164 (733)
Q Consensus 85 ~~~~~~~~~viaHRG~~~~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l~rtt~~~~~~~~~~~~~~~ 164 (733)
.......|.||||||+++.+||||++||+.|++.|+| +||+|||+||||++||+||++|+||||+.+.++++...
T Consensus 16 ~~~~~~~~~IiAHRGa~~~aPENTl~AF~~A~~~Gad--~IE~DV~lTkDG~lVV~HD~tL~Rtt~~~~~~~~~~~~--- 90 (316)
T cd08610 16 KETLGPKPTIIGHRGAPMLAPENTMMSFEKAIEHGAH--GLETDVTLSYDGVPFLMHDFTLKRTTNIGEVQPESACE--- 90 (316)
T ss_pred ccccCCCCeEEECCCCCCCCCccHHHHHHHHHHcCCC--EEEEEEEEccCCCEEEeCCCccccccCCCCcccccccc---
Confidence 3344567899999999999999999999999999999 99999999999999999999999999998765554331
Q ss_pred CCCCCCccccccCCHHhhccccccccccCCC-------------CCCCCCCcccccHHHHHHhhCC--CceEeeccCchh
Q 004721 165 NGVPTPGWFSIDYTLNDLSNIILNQGVYSRT-------------DKFDGNGFQILTVQDMARQIKP--PGLWLNIQHDAF 229 (733)
Q Consensus 165 ~g~~~~g~~v~d~T~~eL~~l~~~~~~~~~~-------------~~~~g~~~~iptL~e~l~~~~~--~~l~iEiK~~~~ 229 (733)
.|.++||+||++++++.||.... ..|.| ++||||+|+|+++++ ..++||||.+..
T Consensus 91 --------~V~~~TlaEL~~ld~g~wf~~~~~~~~~~~~~~~~~~~~~~--e~IPTLeEvL~~~~~~~~~l~IEIK~~~~ 160 (316)
T cd08610 91 --------NPAFFNWDFLSTLNAGKWFVKPRPFYNMKPLSEADKERARN--QSIPKLSNFLRLAEKENKLVIFDLYRPPP 160 (316)
T ss_pred --------chhhCCHHHHhhCCCCCccCcccccccccccccccccccCC--CCCCCHHHHHHHhHhcCceEEEEeCCCcc
Confidence 69999999999999999874211 12344 899999999999964 579999996421
Q ss_pred hhhcCCcHHHHHHHHH-hhcCCc--eeccCCHHHHHHHHHhcCCCcccchhhhcCCCccCCCCCcchhHHHhhHHHHH-h
Q 004721 230 YAQHNLSMRSFVLSVS-RSVVVN--YISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIK-T 305 (733)
Q Consensus 230 ~~~~~~~~~~~v~~~l-~~~~~~--~i~SF~~~~l~~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~-~ 305 (733)
.......+++.+++.+ +++++. ++.||++..++++++..| +.+.++ ... . . +..+. .
T Consensus 161 ~~~~~~~~~~~v~~~i~~~~~~~~~~v~sf~~~~l~~~~~~~P--~~~~~l-~~~-~--------~-------~~~l~~~ 221 (316)
T cd08610 161 KHPYRHTWIRRVLEVILNEVGIEQHLVLWLPAHDRQYVQSVAP--GFKQHV-GRK-V--------P-------IETLLKN 221 (316)
T ss_pred cCcchhHHHHHHHHHHHHHcCCCCCEEEEcCHHHHHHHHHHCc--chhhhh-ccc-c--------c-------HHHHHHc
Confidence 1111113667777775 666763 556899999999999998 555442 110 0 0 01111 1
Q ss_pred hcccccCCccccccCCCccCCCCChHHHHHHHHcCCeEEEeecCCCCCcccCCCCChHHHHHHHHhcCCcccceEEecCC
Q 004721 306 FASGILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFP 385 (733)
Q Consensus 306 ~a~~i~~~~~~i~~~~~~~~~~~~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~~~~~l~~~G~~~VDgIiTD~P 385 (733)
.+.++++.+..+ ++++|+++|++|++|++||||++ ++|++++++| |||||||+|
T Consensus 222 ~~~~l~~~~~~l-----------~~~~v~~a~~~Gl~V~vWTVNd~------------~~~~~l~~~G---VDgIiTD~P 275 (316)
T cd08610 222 NISILNLAYKKL-----------FSNDIRDYKAANIHTNVYVINEP------------WLFSLAWCSG---IHSVTTNNI 275 (316)
T ss_pred CCeEEccchhhC-----------CHHHHHHHHHCCCEEEEECCCCH------------HHHHHHHhCC---cCEEEeCCH
Confidence 344555554333 47899999999999999999875 8899999999 999999999
Q ss_pred CCccccchhc
Q 004721 386 LTPSAAVDCF 395 (733)
Q Consensus 386 ~~~~~~l~~~ 395 (733)
+.+.++.+..
T Consensus 276 ~~l~~~~~~~ 285 (316)
T cd08610 276 HLLKQLDHPH 285 (316)
T ss_pred HHHHHhhchh
Confidence 9887665444
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE6 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 4 (GDPD4)) and their metazoan homologs. Mammalian GDE6 is a transmembrane protein predominantly expressed in the spermatocytes of testis. Although the specific physiological function of mammalian GDE6 has not been elucidated, its different pattern of tissue distribution suggests it might play a critical role in the completion of meiosis during male germ cell differentiation. |
| >PRK11143 glpQ glycerophosphodiester phosphodiesterase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-45 Score=393.63 Aligned_cols=297 Identities=23% Similarity=0.293 Sum_probs=219.4
Q ss_pred CcCCcceEEecCCCCCCCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeeccccccccccCCCcCCCcccccccccc
Q 004721 403 SKSANLLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMA 482 (733)
Q Consensus 403 ~~~~~~~iIaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L~rtt~v~~~~~~~r~~~~~~~~~ 482 (733)
....+|+||||||+++.+||||++||++|++.|+|+||||||+||||++||+||.+|+|+||+.. .|+.|++. .
T Consensus 22 ~~~~~pliiAHRGas~~~PENTl~Af~~A~~~GaD~IE~DV~lTkDg~lVv~HD~~l~rtT~~~~-~~~~~~~~-----~ 95 (355)
T PRK11143 22 ADSAEKIVIAHRGASGYLPEHTLPAKAMAYAQGADYLEQDLVMTKDDQLVVLHDHYLDRVTDVAE-RFPDRARK-----D 95 (355)
T ss_pred hcCCCcEEEECCCCCCCCCcchHHHHHHHHHcCCCEEEEeeeEccCCcEEEeCCchhcccCCccc-cccccccc-----C
Confidence 35678999999999999999999999999999999999999999999999999999999999654 35555532 1
Q ss_pred cCcccccccCHHHHhccCccccCCCc-c----ccccCCcCCCCCccccCHHHHHHHHHhcC----CCceEEEEecchhHH
Q 004721 483 GSGIFSFSLIWDEIQTLIPQISNPYF-K----FKLFRNPKNKNAGKFMKLSDFLEMAKNAN----SLSGVLISIENAVYL 553 (733)
Q Consensus 483 ~~g~~i~d~T~~EL~~L~~~~~~~~~-~----~~~~~~~~~~g~~~IptLeEvL~~~~~~~----~~~~l~iEiK~~~~~ 553 (733)
+.+ +|.++||+||++|+++.+.... + .+..+.+.+..+++||||+|+|++++... ..++++||||.+...
T Consensus 96 g~~-~v~dlT~aEL~~ld~~~~f~~~~g~~~~~~~~~~~~~~~~~~IPTL~Evl~~~~~~~~~~~~~~~l~IEiK~~~~~ 174 (355)
T PRK11143 96 GRY-YAIDFTLDEIKSLKFTEGFDIENGKKVQVYPGRFPMGKSDFRVHTFEEEIEFIQGLNHSTGKNIGIYPEIKAPWFH 174 (355)
T ss_pred Cce-eEeeCcHHHHhhCCCCCCcccccccccccccccccccCCCCccCCHHHHHHHHHHhhhhcCCCceeeEeccCcccc
Confidence 344 7999999999999998642210 0 01112222223589999999999998631 114799999986432
Q ss_pred HhhcCCcHHHHHHHHHHHcCCCCCCCceEEEEeCCHHHHHHHHh-c-cC----ceEEEEeecc-cc--------------
Q 004721 554 AEKQGMSVTNSVMEALGNAGYNKQTALKVMIQSTDSSVLMKLRE-K-TS----YELVYKVKEN-IR-------------- 612 (733)
Q Consensus 554 ~~~~~~~~~~~v~~~l~~~~~~~~~~~~vii~Sfd~~~L~~lk~-~-p~----~~~~~l~~~~-~~-------------- 612 (733)
. ..+..++++++++|+++++... .++|+|+||+++.|+.+++ . |+ +++++++... ..
T Consensus 175 ~-~~~~~~~~~v~~~l~~~g~~~~-~~~v~i~SFd~~~L~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 252 (355)
T PRK11143 175 H-QEGKDIAAKVLEVLKKYGYTGK-DDKVYLQCFDANELKRIKNELEPKMGMDLKLVQLIAYTDWNETQEKQPDGKWVNY 252 (355)
T ss_pred c-ccchhHHHHHHHHHHHhCCCCC-CCCEEEeCCCHHHHHHHHhhcCccccCCcceEEEeccCCCcccccccccCccccc
Confidence 1 1234689999999999998421 1589999999999999988 6 87 4888886421 00
Q ss_pred ---h-hhhHHHHHHHHHHhHhcCCCcccccC-CccccccchHHHHHHHHCCCcEEEEecCCcccccccccCCChHHHHHH
Q 004721 613 ---D-ALNQTIEDIKKFADSVVLSKESVYPL-NSAFITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINT 687 (733)
Q Consensus 613 ---~-~~~~~l~~i~~~a~~i~~~~~~i~~~-~~~~l~~~~~~v~~~~~~Gl~v~~wTvn~~~~~~~~~~~~d~~~e~~~ 687 (733)
+ .++..+..+..+++++.|....+.+. ...++..++++|+++|++|+.|++||||++. ++ .|..|+. ++.+
T Consensus 253 ~~~~~~~~~~~~~~~~~a~~i~p~~~~l~~~~~~~~~~~~~~~v~~ah~~Gl~V~~WTVn~~~--~~-~~~~d~~-~~~~ 328 (355)
T PRK11143 253 NYDWMFKPGAMKEVAKYADGIGPDYHMLVDETSTPGNIKLTGMVKEAHQAKLVVHPYTVRADQ--LP-EYATDVN-QLYD 328 (355)
T ss_pred chhhhcChhhHHHHHhhceeecCChhheeeccccCCccChHHHHHHHHHcCCEEEEEEecccc--ch-hhhcChH-HHHH
Confidence 0 01123555666777887755434321 2234455679999999999999999999873 33 6777766 4444
Q ss_pred H-HhhcCcCEEEeCChHHHHHHHHhh
Q 004721 688 Y-YEGAGIDGVITEFPMTAARYRSKL 712 (733)
Q Consensus 688 ~-l~~~GVdgIiTD~P~~~~~~l~~~ 712 (733)
+ +.++||||||||+|+++.+++.+.
T Consensus 329 ~~~~~~GVDGIiTD~P~~~~~~l~~~ 354 (355)
T PRK11143 329 ILYNQAGVDGVFTDFPDKAVKFLNKQ 354 (355)
T ss_pred HHHHccCCCEEEcCChHHHHHHHhcC
Confidence 4 349999999999999999988653
|
|
| >cd08580 GDPD_Rv2277c_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial protein Rv2277c and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-46 Score=385.31 Aligned_cols=238 Identities=19% Similarity=0.172 Sum_probs=183.4
Q ss_pred ceEEecCCCCCCCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeeccccccccccCCCcCCCcccccccccccCccc
Q 004721 408 LLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIF 487 (733)
Q Consensus 408 ~~iIaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L~rtt~v~~~~~~~r~~~~~~~~~~~g~~ 487 (733)
|+||||||+++.+||||++||++|+++|+|+||+|||+||||++||+||.+|+|+|| ++| .
T Consensus 1 p~viaHRG~~~~~PENTl~Af~~A~~~G~d~iE~DV~lTkDg~lVv~HD~~l~R~t~------------------~~g-~ 61 (263)
T cd08580 1 PLIVAHRGGTADAPENTLLAISKALANGADAIWLTVQLSKDGVPVLYRPSDLKSLTN------------------GSG-A 61 (263)
T ss_pred CeEEEcCCCCCCCCccHHHHHHHHHHcCCCEEEEEeEECCCCCEEEeCCCchhcccC------------------CCC-C
Confidence 579999999999999999999999999999999999999999999999999999999 778 8
Q ss_pred ccccCHHHHhccCccccCCCccccccCCcCCCC-CccccCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCCcHHHHHH
Q 004721 488 SFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKN-AGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVM 566 (733)
Q Consensus 488 i~d~T~~EL~~L~~~~~~~~~~~~~~~~~~~~g-~~~IptLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~v~ 566 (733)
|.++||+||++|+++.|.... ....|.+ +++||||+|+|+++++. .++||||.+.. ..+++.++
T Consensus 62 v~~~t~~el~~ld~g~~~~~~-----~~~~~~~~~~~iPtL~evl~~~~~~----~l~iEiK~~~~------~~~~~~v~ 126 (263)
T cd08580 62 VSAYTAAQLATLNAGYNFKPE-----GGYPYRGKPVGIPTLEQVLRAFPDT----PFILDMKSLPA------DPQAKAVA 126 (263)
T ss_pred hhhCcHHHHhcCCCccccccc-----cCcccCCCCCcCccHHHHHHhhcCC----eEEEEECCCCc------HHHHHHHH
Confidence 999999999999998653210 0111332 36899999999999764 79999997532 15788999
Q ss_pred HHHHHcCCCCCCCceEEEEeCCHHHHHHHHhc-cC-------ceEEEEeecccch---hh-----------hHHHHHHHH
Q 004721 567 EALGNAGYNKQTALKVMIQSTDSSVLMKLREK-TS-------YELVYKVKENIRD---AL-----------NQTIEDIKK 624 (733)
Q Consensus 567 ~~l~~~~~~~~~~~~vii~Sfd~~~L~~lk~~-p~-------~~~~~l~~~~~~~---~~-----------~~~l~~i~~ 624 (733)
++|+++++. ++|+++|||+..|+.+++. |+ ++++++....... .. ...+..+..
T Consensus 127 ~~i~~~~~~----~~v~v~SF~~~~l~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (263)
T cd08580 127 RVLERENAW----SRVRIYSTNADYQDALAPYPQARLFESRDVTRTRLANVAMAHQCDLPPDSGAWAGFELRRKVTVVET 202 (263)
T ss_pred HHHHhcCCC----CCEEEEECCHHHHHHHHhcCcccccccHHHHHHHHHhhhcccccccCccchhhccccccccchheee
Confidence 999999998 8999999999999999999 85 3333332110000 00 000000000
Q ss_pred HHhHhcCCCcccccCCccccccchHHHHHHHHC-CCcEEEEecCCcccccccccCCChHHHHHHHHhhcCcCEEEeCChH
Q 004721 625 FADSVVLSKESVYPLNSAFITSATDIVQRLQSF-KLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPM 703 (733)
Q Consensus 625 ~a~~i~~~~~~i~~~~~~~l~~~~~~v~~~~~~-Gl~v~~wTvn~~~~~~~~~~~~d~~~e~~~~l~~~GVdgIiTD~P~ 703 (733)
+ ........+ .+...++++|+.+|++ |++|++||||++. +|.+++ ++||||||||+|+
T Consensus 203 ~----~~~~~~~~~---~~~l~t~~~V~~~h~~~gl~V~~WTVN~~~-------------~~~~l~-~~GVDgIiTD~P~ 261 (263)
T cd08580 203 F----TLGEGRSPV---QATLWTPAAVDCFRRNSKVKIVLFGINTAD-------------DYRLAK-CLGADAVMVDSPA 261 (263)
T ss_pred e----ccccccccc---ccccCCHHHHHHHHhcCCcEEEEEEeCCHH-------------HHHHHH-HcCCCEEEeCCcc
Confidence 0 011111111 2234579999999999 9999999999997 899997 9999999999998
Q ss_pred H
Q 004721 704 T 704 (733)
Q Consensus 704 ~ 704 (733)
.
T Consensus 262 ~ 262 (263)
T cd08580 262 A 262 (263)
T ss_pred c
Confidence 5
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial protein Rv2277c and similar proteins. Members in this subfamily are bacterial homologous of mammalian GDE4, a transmembrane protein whose cellular function has not yet been elucidated. |
| >cd08612 GDPD_GDE4 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-45 Score=386.30 Aligned_cols=255 Identities=17% Similarity=0.238 Sum_probs=194.5
Q ss_pred cCCcceEEecCCCCCCCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeeccccccccccCCCcCCCccccccccccc
Q 004721 404 KSANLLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAG 483 (733)
Q Consensus 404 ~~~~~~iIaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L~rtt~v~~~~~~~r~~~~~~~~~~ 483 (733)
+...|.||||||+++.+||||++||+.|+++|||+||+|||+||||++||+||.+++|+|| +
T Consensus 23 ~~~~~~iiAHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDG~lVV~HD~~l~Rtt~------------------~ 84 (300)
T cd08612 23 SPFPCRHISHRGGSGENLENTMEAFEHAVKVGTDMLELDVHLTKDGQVVVSHDENLLRSCG------------------V 84 (300)
T ss_pred cCCCCCEEECCCCCCCCCccHHHHHHHHHHcCCCEEEEEeeECcCCeEEEECCccccccCC------------------C
Confidence 3567899999999999999999999999999999999999999999999999999999999 7
Q ss_pred CcccccccCHHHHhccCccccCCCccccccCCcCCCCCccccCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCCcHHH
Q 004721 484 SGIFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTN 563 (733)
Q Consensus 484 ~g~~i~d~T~~EL~~L~~~~~~~~~~~~~~~~~~~~g~~~IptLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~ 563 (733)
+| .|.++|++||++++.+....++ .+.++.+.+. +++||||+|+|+.+++. .++||||.+. ..+++
T Consensus 85 ~g-~V~~~t~~eL~~l~~~~~~~~~-~~~~~~~~~~-g~~IPtL~EvL~~~~~~----~lnIEiK~~~-------~~~~~ 150 (300)
T cd08612 85 DK-LVSDLNYADLPPYLEKLEVTFS-PGDYCVPKGS-DRRIPLLEEVFEAFPDT----PINIDIKVEN-------DELIK 150 (300)
T ss_pred Cc-ccccCCHHHHhhcccccccccc-CCccccccCC-CCCCCCHHHHHHhCCCC----eEEEEECCCc-------hHHHH
Confidence 77 7999999999999653210010 0122234455 48999999999998543 8999999753 14778
Q ss_pred HHHHHHHHcCCCCCCCceEEEEeCCHHHHHHHHhc-cCceEEEEeecccchh-------------hhHHH------HHHH
Q 004721 564 SVMEALGNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDA-------------LNQTI------EDIK 623 (733)
Q Consensus 564 ~v~~~l~~~~~~~~~~~~vii~Sfd~~~L~~lk~~-p~~~~~~l~~~~~~~~-------------~~~~l------~~i~ 623 (733)
.++++++++++. ++|+++|||++.|+.+++. |++++++++....... ..... ....
T Consensus 151 ~v~~~i~~~~~~----~~v~isSF~~~~L~~~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (300)
T cd08612 151 KVSDLVRKYKRE----DITVWGSFNDEIVKKCHKENPNIPLFFSLKRVLLLLLLYYTGLLPFIPIKESFLEIPMPSIFLK 226 (300)
T ss_pred HHHHHHHHcCCC----CcEEEEeCCHHHHHHHHHhCCCccEEechHHHHHHHHHHHcccCccccCccccccccchhhhhh
Confidence 999999999988 8999999999999999999 9999998754210000 00000 0000
Q ss_pred HHHhH--hcCCCcccccCCccccccchHHHHHHHHCCCcEEEEecCCcccccccccCCChHHHHHHHHhhcCcCEEEeCC
Q 004721 624 KFADS--VVLSKESVYPLNSAFITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEF 701 (733)
Q Consensus 624 ~~a~~--i~~~~~~i~~~~~~~l~~~~~~v~~~~~~Gl~v~~wTvn~~~~~~~~~~~~d~~~e~~~~l~~~GVdgIiTD~ 701 (733)
.+... .......+++. .+...++++|+.+|++|++|++||||++. +|.+++ ++||||||||+
T Consensus 227 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~G~~v~vWTVNd~~-------------~~~~l~-~~GVdgIiTD~ 290 (300)
T cd08612 227 TYFPKSMSRLNRFVLFLI--DWLLMRPSLFRHLQKRGIQVYGWVLNDEE-------------EFERAF-ELGADGVMTDY 290 (300)
T ss_pred hcccccccccccceeccc--ccccCCHHHHHHHHHCCCEEEEeecCCHH-------------HHHHHH-hcCCCEEEeCC
Confidence 00000 00000011111 22345789999999999999999999997 899997 99999999999
Q ss_pred hHHHHHHHH
Q 004721 702 PMTAARYRS 710 (733)
Q Consensus 702 P~~~~~~l~ 710 (733)
|+.+.+++.
T Consensus 291 P~~l~~~l~ 299 (300)
T cd08612 291 PTKLREFLD 299 (300)
T ss_pred HHHHHHHHh
Confidence 999998765
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function has not yet been elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests GDE4 may play some distinct role from other members of the GDE family. |
| >cd08601 GDPD_SaGlpQ_like Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-45 Score=379.35 Aligned_cols=248 Identities=23% Similarity=0.230 Sum_probs=197.3
Q ss_pred eEEecCCCCCCCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeeccccccccccCCCcCCCccccccccccc--Ccc
Q 004721 409 LVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAG--SGI 486 (733)
Q Consensus 409 ~iIaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L~rtt~v~~~~~~~r~~~~~~~~~~--~g~ 486 (733)
+||||||+++.+||||++||++|++.|||+||+|||+||||++||+||.+|+|+|| + +|
T Consensus 2 ~iiaHRG~~~~~pENT~~af~~A~~~G~d~vE~DV~lTkDg~~Vv~HD~~l~r~t~------------------~~~~g- 62 (256)
T cd08601 2 AVIAHRGASGYAPEHTFAAYDLAREMGADYIELDLQMTKDGVLVAMHDETLDRTTN------------------IERPG- 62 (256)
T ss_pred ceEEcCCCCCCCCCchHHHHHHHHHcCCCEEEEEeeECCCCeEEEeCCCccccccC------------------CCCCc-
Confidence 58999999999999999999999999999999999999999999999999999999 4 56
Q ss_pred cccccCHHHHhccCccccCCCccccc-cCCcCCCCCccccCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCCcHHHHH
Q 004721 487 FSFSLIWDEIQTLIPQISNPYFKFKL-FRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSV 565 (733)
Q Consensus 487 ~i~d~T~~EL~~L~~~~~~~~~~~~~-~~~~~~~g~~~IptLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~v 565 (733)
.|.++|++||++++++.+.. ..++ .++..+. +++||||+|+|+++++. .+++||||.+... ..+++.+
T Consensus 63 ~v~~~t~~el~~l~~~~~~~--~~~~~~~~~~~~-~~~iptL~evl~~~~~~---~~l~IEiK~~~~~-----~~~~~~v 131 (256)
T cd08601 63 PVKDYTLAEIKQLDAGSWFN--KAYPEYARESYS-GLKVPTLEEVIERYGGR---ANYYIETKSPDLY-----PGMEEKL 131 (256)
T ss_pred eeecCcHHHHHhcCCCcccc--ccCccccccccC-CccCCCHHHHHHHhccC---ceEEEEeeCCCCC-----CCHHHHH
Confidence 79999999999999875421 1111 1223344 48999999999999875 4899999975421 2578899
Q ss_pred HHHHHHcCCCCCC--CceEEEEeCCHHHHHHHHhc-cCceEEEEeecccc-hhhhHHHHHHHHHHhHhcCCCcccccCCc
Q 004721 566 MEALGNAGYNKQT--ALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIR-DALNQTIEDIKKFADSVVLSKESVYPLNS 641 (733)
Q Consensus 566 ~~~l~~~~~~~~~--~~~vii~Sfd~~~L~~lk~~-p~~~~~~l~~~~~~-~~~~~~l~~i~~~a~~i~~~~~~i~~~~~ 641 (733)
+++++++++.... .++|+|+||++++|++++++ |+++++++++.... ......++.+..++.++++.
T Consensus 132 ~~~l~~~~~~~~~~~~~~v~i~Sf~~~~l~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 202 (256)
T cd08601 132 LATLDKYGLLTDNLKNGQVIIQSFSKESLKKLHQLNPNIPLVQLLWYGEGAETYDKWLDEIKEYAIGIGPS--------- 202 (256)
T ss_pred HHHHHHcCCCcccCCCCCEEEecCCHHHHHHHHHhCCCCcEEEEeccCcccccchhHHHHHHhcCeEeCCc---------
Confidence 9999999875210 15899999999999999999 99999999764321 11112233333333333321
Q ss_pred cccccchHHHHHHHHCCCcEEEEecCCcccccccccCCChHHHHHHHHhhcCcCEEEeCChHHHHHHHH
Q 004721 642 AFITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPMTAARYRS 710 (733)
Q Consensus 642 ~~l~~~~~~v~~~~~~Gl~v~~wTvn~~~~~~~~~~~~d~~~e~~~~l~~~GVdgIiTD~P~~~~~~l~ 710 (733)
+...++++++.+|++|++|++||+|+.+ ++.+++ ++||||||||+|+.++++++
T Consensus 203 -~~~~~~~~v~~~~~~g~~v~~wTvn~~~-------------~~~~l~-~~Gvd~IiTD~p~~~~~~~~ 256 (256)
T cd08601 203 -IADADPWMVHLIHKKGLLVHPYTVNEKA-------------DMIRLI-NWGVDGMFTNYPDRLKEVLK 256 (256)
T ss_pred -hhhcCHHHHHHHHHCCCEEEEEecCCHH-------------HHHHHH-hcCCCEEEeCCHHHHHHhhC
Confidence 1223689999999999999999999987 888887 99999999999999988763
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) from Staphylococcus aureus, Bacillus subtilis and similar proteins. Members in this family show very high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. |
| >cd08574 GDPD_GDE_2_3_6 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2, GDE3, GDE6-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-45 Score=378.31 Aligned_cols=233 Identities=14% Similarity=0.102 Sum_probs=181.7
Q ss_pred CCEEEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCCccccCccccccccccccccCCCCCC
Q 004721 91 PPFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTP 170 (733)
Q Consensus 91 ~~~viaHRG~~~~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l~rtt~~~~~~~~~~~~~~~~g~~~~ 170 (733)
+|.||||||+++.+||||++||++|++.|+| +||+|||+||||++||+||++|+||||+.+.++.+...
T Consensus 1 ~~~iiAHRG~~~~aPENTl~Af~~A~~~Gad--~iE~DV~lTkDg~lVV~HD~~l~Rtt~~~g~~~~~~~~--------- 69 (252)
T cd08574 1 KPALIGHRGAPMLAPENTLMSFEKALEHGVY--GLETDVTISYDGVPFLMHDRTLRRTTNVADVFPERAHE--------- 69 (252)
T ss_pred CCeEEecCCCCCCCCccHHHHHHHHHHcCCC--EEEEEEeEccCCcEEEeCCCcccccCCCCccccccccc---------
Confidence 4789999999999999999999999999999 99999999999999999999999999998755543321
Q ss_pred ccccccCCHHhhccccccccccCCCC-------------CCCCCCcccccHHHHHHhhC--CCceEeeccCchhhhhcCC
Q 004721 171 GWFSIDYTLNDLSNIILNQGVYSRTD-------------KFDGNGFQILTVQDMARQIK--PPGLWLNIQHDAFYAQHNL 235 (733)
Q Consensus 171 g~~v~d~T~~eL~~l~~~~~~~~~~~-------------~~~g~~~~iptL~e~l~~~~--~~~l~iEiK~~~~~~~~~~ 235 (733)
.|.++||+||++|+++.||....+ .|.| ++||||+|+|++++ +..++||||.+........
T Consensus 70 --~v~~~T~~eL~~ld~g~~f~~~~~~~~~~~~~~~~~~~~~~--~~IPtL~evl~~~~~~~~~l~iEiK~~~~~~~~~~ 145 (252)
T cd08574 70 --RASMFTWTDLQQLNAGQWFLKDDPFWTASSLSESDREEAGN--QSIPSLAELLRLAKKHNKSVIFDLRRPPPNHPYYQ 145 (252)
T ss_pred --chhcCCHHHHhhCCCCCcccCCCccchhcccccchhhhcCC--CCCCCHHHHHHHHHHcCCeEEEEecCCcccCccHH
Confidence 689999999999999998743211 3455 89999999999996 4679999996431111112
Q ss_pred cHHHHHHHHHhhcCC---ceeccCCHHHHHHHHHhcCCCcccchhhhcCCCccCCCCCcchhHHHhhHHHHHhhcccccC
Q 004721 236 SMRSFVLSVSRSVVV---NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTFASGILV 312 (733)
Q Consensus 236 ~~~~~v~~~l~~~~~---~~i~SF~~~~l~~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~i~~ 312 (733)
.+++.++++++++++ .+++||+.. +++++++.| +.++++ +.. . ... .+.. ..+.++++
T Consensus 146 ~~~~~v~~~l~~~~~~~~~v~~s~~~~-~~~~~~~~p--~~~~~~-~~~-~--------~~~----~~~~--~~~~~~~~ 206 (252)
T cd08574 146 SYVNITLDTILASGIPQHQVFWLPDEY-RALVRKVAP--GFQQVS-GRK-L--------PVE----SLRE--NGISRLNL 206 (252)
T ss_pred HHHHHHHHHHHHcCCCcccEEEccHHH-HHHHHHHCC--CCeEee-ccc-c--------chH----HHHh--cCCeEEcc
Confidence 478899999999987 256566654 799999998 566554 111 0 001 0111 13455665
Q ss_pred CccccccCCCccCCCCChHHHHHHHHcCCeEEEeecCCCCCcccCCCCChHHHHHHHHhcCCcccceEEec
Q 004721 313 PKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSD 383 (733)
Q Consensus 313 ~~~~i~~~~~~~~~~~~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~~~~~l~~~G~~~VDgIiTD 383 (733)
.+..+ ++++|+.+|++|++|++||||++ ++|++++++| |||||||
T Consensus 207 ~~~~~-----------~~~~v~~~~~~g~~v~~WTVn~~------------~~~~~l~~~G---VdgIiTD 251 (252)
T cd08574 207 EYSQL-----------SAQEIREYSKANISVNLYVVNEP------------WLYSLLWCSG---VQSVTTN 251 (252)
T ss_pred CcccC-----------CHHHHHHHHHCCCEEEEEccCCH------------HHHHHHHHcC---CCEEecC
Confidence 54433 47899999999999999999875 8999999999 9999999
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian glycerophosphodiester phosphodiesterase domain-containing protein subtype 5 (GDE2), subtype 2 (GDE3), subtype 1 (GDE6), and their eukaryotic homologs. Mammalian GDE2, GDE3, and GDE6 show very high sequence similarity to each other and have been classified into the same family. Although they are all transmembrane proteins, based on different pattern of tissue distribution, these enzymes might display diverse cellular functions. Mammalian GDE2 is primarily expressed in mature neurons. It selectively hydrolyzes glycerophosphocholine (GPC) and mainly functions in a complex with an antioxidant scavenger peroxiredoxin1 (Prdx1) to control motor neuron differentiation in the spinal cord. Mammalian GDE3 is specifically expressed in bo |
| >cd08601 GDPD_SaGlpQ_like Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-45 Score=378.94 Aligned_cols=237 Identities=22% Similarity=0.287 Sum_probs=190.5
Q ss_pred EEEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCCccccCc--cccccccccccccCCCCCC
Q 004721 93 FVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNI--AQIFKTQQKNYLVNGVPTP 170 (733)
Q Consensus 93 ~viaHRG~~~~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l~rtt~~--~~~~~~~~~~~~~~g~~~~ 170 (733)
+||||||+++.+||||++||++|++.|+| +||+|||+||||++||+||++|+|+|++ .+
T Consensus 2 ~iiaHRG~~~~~pENT~~af~~A~~~G~d--~vE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~g----------------- 62 (256)
T cd08601 2 AVIAHRGASGYAPEHTFAAYDLAREMGAD--YIELDLQMTKDGVLVAMHDETLDRTTNIERPG----------------- 62 (256)
T ss_pred ceEEcCCCCCCCCCchHHHHHHHHHcCCC--EEEEEeeECCCCeEEEeCCCccccccCCCCCc-----------------
Confidence 58999999999999999999999999999 9999999999999999999999999998 54
Q ss_pred ccccccCCHHhhccccccccccCC-----CCCCCCCCcccccHHHHHHhhCC-CceEeeccCchhhhhcCCcHHHHHHHH
Q 004721 171 GWFSIDYTLNDLSNIILNQGVYSR-----TDKFDGNGFQILTVQDMARQIKP-PGLWLNIQHDAFYAQHNLSMRSFVLSV 244 (733)
Q Consensus 171 g~~v~d~T~~eL~~l~~~~~~~~~-----~~~~~g~~~~iptL~e~l~~~~~-~~l~iEiK~~~~~~~~~~~~~~~v~~~ 244 (733)
.|.++||+||++++++.+|... +..+.+ ++||||+|+|++++. .+++||||.+... ..+++.++++
T Consensus 63 --~v~~~t~~el~~l~~~~~~~~~~~~~~~~~~~~--~~iptL~evl~~~~~~~~l~IEiK~~~~~----~~~~~~v~~~ 134 (256)
T cd08601 63 --PVKDYTLAEIKQLDAGSWFNKAYPEYARESYSG--LKVPTLEEVIERYGGRANYYIETKSPDLY----PGMEEKLLAT 134 (256)
T ss_pred --eeecCcHHHHHhcCCCccccccCccccccccCC--ccCCCHHHHHHHhccCceEEEEeeCCCCC----CCHHHHHHHH
Confidence 7999999999999998876421 112334 899999999999964 7899999965322 2478889999
Q ss_pred HhhcCC---------ceeccCCHHHHHHHHHhcCCCcccchhhhcCCCccCCCCCcchhHHHhhHHHHHhhcccccCCcc
Q 004721 245 SRSVVV---------NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTFASGILVPKD 315 (733)
Q Consensus 245 l~~~~~---------~~i~SF~~~~l~~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~i~~~~~ 315 (733)
++++++ ++|+||+++++++++++.| ..++++++..... . ..... .+..+...+.++++...
T Consensus 135 l~~~~~~~~~~~~~~v~i~Sf~~~~l~~~~~~~p--~~~~~~l~~~~~~-~----~~~~~---~~~~~~~~~~~~~~~~~ 204 (256)
T cd08601 135 LDKYGLLTDNLKNGQVIIQSFSKESLKKLHQLNP--NIPLVQLLWYGEG-A----ETYDK---WLDEIKEYAIGIGPSIA 204 (256)
T ss_pred HHHcCCCcccCCCCCEEEecCCHHHHHHHHHhCC--CCcEEEEeccCcc-c----ccchh---HHHHHHhcCeEeCCchh
Confidence 999854 4899999999999999998 6777763322111 0 00111 12333335556666543
Q ss_pred ccccCCCccCCCCChHHHHHHHHcCCeEEEeecCCCCCcccCCCCChHHHHHHHHhcCCcccceEEecCCCCccccc
Q 004721 316 YIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPSAAV 392 (733)
Q Consensus 316 ~i~~~~~~~~~~~~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~~~~~l~~~G~~~VDgIiTD~P~~~~~~l 392 (733)
.+ ++++++.+|++|++|++||||+. ++|++++++| |||||||+|+.+++++
T Consensus 205 ~~-----------~~~~v~~~~~~g~~v~~wTvn~~------------~~~~~l~~~G---vd~IiTD~p~~~~~~~ 255 (256)
T cd08601 205 DA-----------DPWMVHLIHKKGLLVHPYTVNEK------------ADMIRLINWG---VDGMFTNYPDRLKEVL 255 (256)
T ss_pred hc-----------CHHHHHHHHHCCCEEEEEecCCH------------HHHHHHHhcC---CCEEEeCCHHHHHHhh
Confidence 22 47899999999999999999864 8999999999 9999999999887765
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) from Staphylococcus aureus, Bacillus subtilis and similar proteins. Members in this family show very high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. |
| >cd08608 GDPD_GDE2 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2 and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-45 Score=389.21 Aligned_cols=243 Identities=13% Similarity=0.079 Sum_probs=187.3
Q ss_pred CCEEEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCCccccCccccccccccccccCCCCCC
Q 004721 91 PPFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTP 170 (733)
Q Consensus 91 ~~~viaHRG~~~~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l~rtt~~~~~~~~~~~~~~~~g~~~~ 170 (733)
+|+||||||+++.+||||++||++|+++||| +||+|||+||||++||+||++|+||||+.+.++++...
T Consensus 1 ~p~IIAHRGas~~aPENTL~AF~~A~~~GaD--~IElDV~lTkDGvlVV~HD~tL~RtTn~~g~v~~~~~~--------- 69 (351)
T cd08608 1 KPAIIGHRGAPMLAPENTLMSFQKALEQKVY--GLQADVTISLDGVPFLMHDRTLRRTTNVDRVFPERQYE--------- 69 (351)
T ss_pred CCeEEEcCCCCCCCCcchHHHHHHHHHcCCC--EEEEEeeEccCCcEEEECCCccccccCCCCcccccccc---------
Confidence 4789999999999999999999999999999 99999999999999999999999999999866554432
Q ss_pred ccccccCCHHhhccccccccccCCCC-------------CCCCCCcccccHHHHHHhhCC--CceEeeccCchhhhhcCC
Q 004721 171 GWFSIDYTLNDLSNIILNQGVYSRTD-------------KFDGNGFQILTVQDMARQIKP--PGLWLNIQHDAFYAQHNL 235 (733)
Q Consensus 171 g~~v~d~T~~eL~~l~~~~~~~~~~~-------------~~~g~~~~iptL~e~l~~~~~--~~l~iEiK~~~~~~~~~~ 235 (733)
.++++||+||++|++|.||....+ .+.| ++||||+|+|+++++ ..++||||.+........
T Consensus 70 --~~~~~TlaEL~~LdaG~wf~~~~p~~~~~~~~~~~~~~~~g--e~IPTL~EvL~~~~~~~~~l~iEIK~~~~~~~~~~ 145 (351)
T cd08608 70 --DASMFNWTDLERLNAGQWFLKDDPFWTAQSLSPSDRKEAGN--QSVCSLAELLELAKRYNASVLLNLRRPPPNHPYHQ 145 (351)
T ss_pred --ccccCCHHHHhhCCCCcccccCCccccccccccccccccCC--CCCCCHHHHHHHHHhcCCeEEEEECCCcccCcchh
Confidence 578999999999999998742211 3444 899999999999964 578999996421111112
Q ss_pred cHHHHHHHHHhhcCC----ceeccCCHHHHHHHHHhcCCCcccchhhhcCCCccCCCCCcchhHHHhhHHHHH-hhcccc
Q 004721 236 SMRSFVLSVSRSVVV----NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIK-TFASGI 310 (733)
Q Consensus 236 ~~~~~v~~~l~~~~~----~~i~SF~~~~l~~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~-~~a~~i 310 (733)
.+++.+++++++++. ++++||+. +++++++.| +.+... .... ....+. ..+.++
T Consensus 146 ~~~~~v~~~i~~~~~~~~~vi~sSf~~--~~~vr~l~P--~~~~~~--~~~~---------------~~~~~~~~~~~~l 204 (351)
T cd08608 146 SWINLTLKTILASGIPQEQVMWTPDWQ--RKLVRKVAP--GFQQTS--GEKL---------------PVASLRERGITRL 204 (351)
T ss_pred HHHHHHHHHHHHhCCCcCeEEEEcchH--HHHHHHHCC--CCeeec--cccc---------------hHHHHHHcCCeEE
Confidence 467788888888875 35578876 478999988 454321 0000 001111 134456
Q ss_pred cCCccccccCCCccCCCCChHHHHHHHHcCCeEEEeecCCCCCcccCCCCChHHHHHHHHhcCCcccceEEecCCCCccc
Q 004721 311 LVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPSA 390 (733)
Q Consensus 311 ~~~~~~i~~~~~~~~~~~~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~~~~~l~~~G~~~VDgIiTD~P~~~~~ 390 (733)
++.+..+ ++++|+++|++|++|++||||++ ++|++++++| |||||||+|+++++
T Consensus 205 ~~~~~~l-----------t~~~v~~~~~~Gl~V~vWTVN~~------------~~~~~l~~~G---VdgIiTD~P~~l~~ 258 (351)
T cd08608 205 NLRYTQA-----------SAQEIRDYSASNLSVNLYTVNEP------------WLYSLLWCSG---VPSVTSDASHVLRK 258 (351)
T ss_pred ccchhhc-----------CHHHHHHHHHCCCEEEEEecCCH------------HHHHHHHHCC---CCEEEECCHHHHHH
Confidence 6655433 47899999999999999999875 8899999999 99999999999887
Q ss_pred cchhc
Q 004721 391 AVDCF 395 (733)
Q Consensus 391 ~l~~~ 395 (733)
.....
T Consensus 259 l~~~~ 263 (351)
T cd08608 259 VPFPL 263 (351)
T ss_pred hhhhh
Confidence 65443
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE2 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 5 (GDPD5)) and their metazoan homologs. Mammalian GDE2 is transmembrane protein primarily expressed in mature neurons. It is a mammalian homolog of bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Mammalian GDE2 selectively hydrolyzes glycerophosphocholine (GPC) and has been characterized as GPC-GDE (EC 3.1.4.2) that contributes to osmotic regulation of cellular GPC. Mammalian GDE2 functions in a complex with an antioxidant scavenger peroxiredoxin1 (Prdx1) to control motor neuron differenti |
| >cd08609 GDPD_GDE3 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE3 and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-45 Score=384.83 Aligned_cols=244 Identities=12% Similarity=0.098 Sum_probs=189.7
Q ss_pred CCEEEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCCccccCccccccccccccccCCCCCC
Q 004721 91 PPFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTP 170 (733)
Q Consensus 91 ~~~viaHRG~~~~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l~rtt~~~~~~~~~~~~~~~~g~~~~ 170 (733)
+|.||||||+++.+||||++||++|++.|+| +||+|||+||||++||+||++|+||||+.+.++...
T Consensus 26 ~~~IIAHRGas~~aPENTl~AF~~Ai~~GaD--~IE~DV~lTkDG~lVV~HD~tL~Rtt~~~g~~~~~~----------- 92 (315)
T cd08609 26 KPALVGHRGAPMLAPENTLMSLRKSLECGVV--VFETDVMVSKDGVPFLMHDEGLLRTTNVKDVFPGRD----------- 92 (315)
T ss_pred CCeEEECCCCCCCCCccHHHHHHHHHHcCCC--EEEEEEEECCCCCEEEeCCCcccccCCCCCCccccc-----------
Confidence 4789999999999999999999999999999 999999999999999999999999999876322111
Q ss_pred ccccccCCHHhhccccccccccCCCC-------------CCCCCCcccccHHHHHHhhCC--CceEeeccCchhhhhcCC
Q 004721 171 GWFSIDYTLNDLSNIILNQGVYSRTD-------------KFDGNGFQILTVQDMARQIKP--PGLWLNIQHDAFYAQHNL 235 (733)
Q Consensus 171 g~~v~d~T~~eL~~l~~~~~~~~~~~-------------~~~g~~~~iptL~e~l~~~~~--~~l~iEiK~~~~~~~~~~ 235 (733)
.+.|.++||+||++++++.||....+ .+. +++||||+|+|+++++ ..++||||.+........
T Consensus 93 ~~~V~dlTlaEL~~ld~g~wf~~~~~~~~~~~~~~~~~~~~~--ge~IPTL~EvL~~~~~~~~~l~IEIK~~~~~~~~~~ 170 (315)
T cd08609 93 AAGSNNFTWTELKTLNAGSWFLERRPFWTLSSLSEEDRREAD--NQTVPSLSELLDLAKKHNVSIMFDLRNENNSHVFYS 170 (315)
T ss_pred cccHhhCCHHHHhhCCCCcccCcccccccccccccccccccC--CCCCCCHHHHHHHHHhcCCEEEEEeCCCCCCCccHH
Confidence 12599999999999999988743211 233 4899999999999864 679999996421111112
Q ss_pred cHHHHHHHHHhhcCCc--eeccCCHHHHHHHHHhcCCCcccchhhhcCCCccCCCCCcchhHHHhhHHHHHhhcccccCC
Q 004721 236 SMRSFVLSVSRSVVVN--YISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTFASGILVP 313 (733)
Q Consensus 236 ~~~~~v~~~l~~~~~~--~i~SF~~~~l~~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~i~~~ 313 (733)
.+++.+++.++++++. .+.+|++..+++++++.| +.+.++. .. . ......+.++++.
T Consensus 171 ~f~~~vl~~i~~~~~~~~~v~~~~~~~l~~~~~~~P--~~~~~~~-~~-~-----------------~~~~~~~~~i~~~ 229 (315)
T cd08609 171 SFVFYTLETILKLGIPPDKVWWLPDEYRHDVMKMEP--GFKQVYG-RQ-K-----------------EMLMDGGNFMNLP 229 (315)
T ss_pred HHHHHHHHHHHHcCCCcceEEEeCHHHHHHHHHhCc--Cceeecc-cc-h-----------------hhHhcCCeEEecc
Confidence 5778899999999853 344678899999999998 5665531 10 0 0001134445554
Q ss_pred ccccccCCCccCCCCChHHHHHHHHcCCeEEEeecCCCCCcccCCCCChHHHHHHHHhcCCcccceEEecCCCCccccch
Q 004721 314 KDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPSAAVD 393 (733)
Q Consensus 314 ~~~i~~~~~~~~~~~~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~~~~~l~~~G~~~VDgIiTD~P~~~~~~l~ 393 (733)
+..+ ++++|+.+|++|++|++||||++ ++|++++++| |||||||+|+++.+.++
T Consensus 230 ~~~l-----------~~~~v~~~~~~G~~v~vWTVNd~------------~~~~~l~~~G---VDgIiTD~P~~l~~~~~ 283 (315)
T cd08609 230 YQDL-----------SALEIKELRKDNVSVNLWVVNEP------------WLFSLLWCSG---VSSVTTNACQLLKDMSK 283 (315)
T ss_pred cccC-----------CHHHHHHHHHCCCEEEEECCCCH------------HHHHHHHhcC---CCEEEcCCHHHHHHhhh
Confidence 4333 47899999999999999999875 8999999999 99999999999888877
Q ss_pred hcc
Q 004721 394 CFA 396 (733)
Q Consensus 394 ~~~ 396 (733)
.+.
T Consensus 284 ~~~ 286 (315)
T cd08609 284 PIW 286 (315)
T ss_pred hhh
Confidence 654
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE3 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 2 (GDPD2), Osteoblast differentiation promoting factor) and their metazoan homologs. Mammalian GDE3 is a transmembrane protein specifically expressed in bone tissues and spleen. It is a mammalian homolog of bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Mammalian GDE3 has been characterized as glycerophosphoinositol inositolphosphodiesterase (EC 3.1.4.43) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate inositol 1-phosphate (Ins1P) and glycerol. Mammalia |
| >PRK09454 ugpQ cytoplasmic glycerophosphodiester phosphodiesterase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-44 Score=372.11 Aligned_cols=237 Identities=17% Similarity=0.109 Sum_probs=185.6
Q ss_pred CcceEEecCCCCCCCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeeccccccccccCCCcCCCcccccccccccCc
Q 004721 406 ANLLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSG 485 (733)
Q Consensus 406 ~~~~iIaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L~rtt~v~~~~~~~r~~~~~~~~~~~g 485 (733)
+.|.+|||||+++.+||||++||+.|++.|+|+||+|||+||||++||+||.+|+|+|| ++|
T Consensus 6 ~~~~iiaHRG~~~~~pENT~~Af~~A~~~G~d~vE~DV~lT~Dg~lVV~HD~~l~R~t~------------------~~~ 67 (249)
T PRK09454 6 PYPRIVAHRGGGKLAPENTLAAIDVGARYGHRMIEFDAKLSADGEIFLLHDDTLERTSN------------------GWG 67 (249)
T ss_pred CCCeEEECCCCCCCCChHHHHHHHHHHHcCCCEEEEEeeECCCCCEEEECCCcccccCC------------------CCC
Confidence 35899999999999999999999999999999999999999999999999999999999 667
Q ss_pred ccccccCHHHHhccCccccCCCccccccCCcCCCCCccccCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCCcHHHHH
Q 004721 486 IFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSV 565 (733)
Q Consensus 486 ~~i~d~T~~EL~~L~~~~~~~~~~~~~~~~~~~~g~~~IptLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~v 565 (733)
.|.++||+||++++++.+. .+.+. +++||||+|+|+++++. + +.++||||...... ..+.+.+
T Consensus 68 -~v~~~t~~el~~l~~~~~~---------~~~~~-~~~iPtL~evl~~~~~~-~-~~l~iEiK~~~~~~----~~~~~~v 130 (249)
T PRK09454 68 -VAGELTWQDLAQLDAGSWF---------SAAFA-GEPLPTLSQVAARCRAH-G-MAANIEIKPTTGRE----AETGRVV 130 (249)
T ss_pred -chhhCCHHHHHhcCCCCcc---------CCCCC-CCcCCCHHHHHHHHHhc-C-CEEEEEECCCCCcc----hhHHHHH
Confidence 7999999999999987542 23455 48999999999999764 3 37999999643211 1233334
Q ss_pred HHHHHHc--CCCCCCCceEEEEeCCHHHHHHHHhc-cCceEEEEeecccchhhhHHHHHHHHHHhHhcCCCcccccCCcc
Q 004721 566 MEALGNA--GYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNSA 642 (733)
Q Consensus 566 ~~~l~~~--~~~~~~~~~vii~Sfd~~~L~~lk~~-p~~~~~~l~~~~~~~~~~~~l~~i~~~a~~i~~~~~~i~~~~~~ 642 (733)
..+++.. ++. ++++++||++.+|+.++++ |++++++++.....+ ......+ ++ ...+.+ .
T Consensus 131 ~~~~~~~~~~~~----~~v~v~SF~~~~l~~l~~~~p~~~~~~l~~~~~~~----~~~~~~~----~~--~~~~~~---~ 193 (249)
T PRK09454 131 ALAARALWAGAA----VPPLLSSFSEDALEAARQAAPELPRGLLLDEWPDD----WLELTRR----LG--CVSLHL---N 193 (249)
T ss_pred HHHHHHHhcCCC----CCEEEEeCCHHHHHHHHHhCCCCcEEEEecccccc----HHHHHHh----cC--CeEEec---c
Confidence 3444443 343 5899999999999999999 999999998642111 1111111 11 112222 1
Q ss_pred ccccchHHHHHHHHCCCcEEEEecCCcccccccccCCChHHHHHHHHhhcCcCEEEeCChHHHHHH
Q 004721 643 FITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPMTAARY 708 (733)
Q Consensus 643 ~l~~~~~~v~~~~~~Gl~v~~wTvn~~~~~~~~~~~~d~~~e~~~~l~~~GVdgIiTD~P~~~~~~ 708 (733)
+...++++++.+|++|++|++||+|+++ ++.+++ ++|||||+||+|+.+...
T Consensus 194 ~~~~~~~~v~~~~~~g~~v~~WTvn~~~-------------~~~~l~-~~GVdgIiTD~p~~~~~~ 245 (249)
T PRK09454 194 HKLLDEARVAALKAAGLRILVYTVNDPA-------------RARELL-RWGVDCICTDRIDLIGPD 245 (249)
T ss_pred cccCCHHHHHHHHHCCCEEEEEeCCCHH-------------HHHHHH-HcCCCEEEeCChHhcCcc
Confidence 2234789999999999999999999997 888887 999999999999987654
|
|
| >cd08581 GDPD_like_1 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-44 Score=367.19 Aligned_cols=228 Identities=14% Similarity=0.153 Sum_probs=179.1
Q ss_pred EEecCCCCCCCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeeccccccccccCCCcCCCcccccccccccCccccc
Q 004721 410 VISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIFSF 489 (733)
Q Consensus 410 iIaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L~rtt~v~~~~~~~r~~~~~~~~~~~g~~i~ 489 (733)
||||||+++.+||||++||++|++.|||+||+|||+||||++||+||.+|+|+|| ++| .|.
T Consensus 1 iiaHRG~~~~~PENTl~Af~~A~~~gad~iE~DV~lTkDg~~Vv~HD~~l~r~t~------------------~~~-~v~ 61 (229)
T cd08581 1 LVAHRGYPARYPENTLVGFRAAVDAGARFVEFDVQLSADGVPVVFHDDTLLRLTG------------------VEG-LLH 61 (229)
T ss_pred CEeCCCCCCCCCccHHHHHHHHHHcCCCEEEEeeeECCCCcEEEECCCccccccC------------------CCc-eec
Confidence 6899999999999999999999999999999999999999999999999999999 667 799
Q ss_pred ccCHHHHhccCccccCCCccccccCCcCCCCCccccCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCCcHHHHHHHHH
Q 004721 490 SLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEAL 569 (733)
Q Consensus 490 d~T~~EL~~L~~~~~~~~~~~~~~~~~~~~g~~~IptLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~v~~~l 569 (733)
++|++||++++..... ++.+.|. +++||||+|+|+++++..+ ++++||||.+.... ..+.+.+.+++
T Consensus 62 ~~t~~el~~l~~~~~~-------~~~~~~~-~~~iptL~evl~~~~~~~~-~~l~iEiK~~~~~~----~~~~~~v~~~~ 128 (229)
T cd08581 62 ELEDAELDSLRVAEPA-------RFGSRFA-GEPLPSLAAVVQWLAQHPQ-VTLFVEIKTESLDR----FGLERVVDKVL 128 (229)
T ss_pred cCCHHHHhhcccccCc-------ccccccC-CccCCCHHHHHHHHhhCCC-ceEEEEecCCcccc----cchhHHHHHHH
Confidence 9999999999764321 1223455 4899999999999987323 38999999764321 23455566666
Q ss_pred HHcC-CCCCCCceEEEEeCCHHHHHHHHhccCceEEEEeecccchhhhHHHHHHHHHHhHhcCCCcccccCCccccccch
Q 004721 570 GNAG-YNKQTALKVMIQSTDSSVLMKLREKTSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNSAFITSAT 648 (733)
Q Consensus 570 ~~~~-~~~~~~~~vii~Sfd~~~L~~lk~~p~~~~~~l~~~~~~~~~~~~l~~i~~~a~~i~~~~~~i~~~~~~~l~~~~ 648 (733)
+.++ +. ++++++|||+.+|+.+|++|.++++++...... ... ..+..+++ .++.+... + .
T Consensus 129 ~~~~~~~----~~~~i~SF~~~~l~~~r~~~~~~~~~l~~~~~~----~~~----~~~~~~~~--~~~~~~~~--~--~- 189 (229)
T cd08581 129 RALPAVA----AQRVLISFDYDLLALAKQQGGPRTGWVLPDWDD----ASL----AEADELQP--DYLFCDKN--L--L- 189 (229)
T ss_pred HHHHhcc----CCeEEEeCCHHHHHHHHhcCCCCeEEEeccCCh----HHH----HHHHhhCC--CEEecccc--c--C-
Confidence 6664 44 699999999999999999988999988743211 111 22233433 23333221 1 1
Q ss_pred HHHHHHHHCCCcEEEEecCCcccccccccCCChHHHHHHHHhhcCcCEEEeCCh
Q 004721 649 DIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFP 702 (733)
Q Consensus 649 ~~v~~~~~~Gl~v~~wTvn~~~~~~~~~~~~d~~~e~~~~l~~~GVdgIiTD~P 702 (733)
..++.+|++|++|++||||++. ++.+++ ++||||||||+|
T Consensus 190 ~~v~~~~~~G~~v~vWTVn~~~-------------~~~~l~-~~GVdgiiTD~P 229 (229)
T cd08581 190 PDTGDLWAGTWKWVIYEVNEPA-------------EALALA-ARGVALIETDNI 229 (229)
T ss_pred hhhHHHHhCCceEEEEEcCCHH-------------HHHHHH-HhCCcEEEcCCC
Confidence 3578899999999999999997 899997 999999999998
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity to Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. |
| >PRK09454 ugpQ cytoplasmic glycerophosphodiester phosphodiesterase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-44 Score=372.59 Aligned_cols=231 Identities=14% Similarity=0.092 Sum_probs=179.9
Q ss_pred CCEEEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCCccccCccccccccccccccCCCCCC
Q 004721 91 PPFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTP 170 (733)
Q Consensus 91 ~~~viaHRG~~~~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l~rtt~~~~~~~~~~~~~~~~g~~~~ 170 (733)
.|.||||||+++.+||||++||+.|++.|+| +||+|||+||||++||+||.+|+|+|++++
T Consensus 7 ~~~iiaHRG~~~~~pENT~~Af~~A~~~G~d--~vE~DV~lT~Dg~lVV~HD~~l~R~t~~~~----------------- 67 (249)
T PRK09454 7 YPRIVAHRGGGKLAPENTLAAIDVGARYGHR--MIEFDAKLSADGEIFLLHDDTLERTSNGWG----------------- 67 (249)
T ss_pred CCeEEECCCCCCCCChHHHHHHHHHHHcCCC--EEEEEeeECCCCCEEEECCCcccccCCCCC-----------------
Confidence 5899999999999999999999999999999 999999999999999999999999999876
Q ss_pred ccccccCCHHhhccccccccccCCCCCCCCCCcccccHHHHHHhhC--CCceEeeccCchhhhhcCCcHHHHHHHHHhhc
Q 004721 171 GWFSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIK--PPGLWLNIQHDAFYAQHNLSMRSFVLSVSRSV 248 (733)
Q Consensus 171 g~~v~d~T~~eL~~l~~~~~~~~~~~~~~g~~~~iptL~e~l~~~~--~~~l~iEiK~~~~~~~~~~~~~~~v~~~l~~~ 248 (733)
.|.++||+||++++++.++ ...|.+ ++||||+|+|++++ +..++||+|....... ...+.+..+++..
T Consensus 68 --~v~~~t~~el~~l~~~~~~---~~~~~~--~~iPtL~evl~~~~~~~~~l~iEiK~~~~~~~---~~~~~v~~~~~~~ 137 (249)
T PRK09454 68 --VAGELTWQDLAQLDAGSWF---SAAFAG--EPLPTLSQVAARCRAHGMAANIEIKPTTGREA---ETGRVVALAARAL 137 (249)
T ss_pred --chhhCCHHHHHhcCCCCcc---CCCCCC--CcCCCHHHHHHHHHhcCCEEEEEECCCCCcch---hHHHHHHHHHHHH
Confidence 7999999999999998865 345665 89999999999985 4679999995321111 1233333333332
Q ss_pred -----CCceeccCCHHHHHHHHHhcCCCcccchhhhcCCCccCCCCCcchhHHHhhHHHHHh-hcccccCCccccccCCC
Q 004721 249 -----VVNYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKT-FASGILVPKDYIWPVDE 322 (733)
Q Consensus 249 -----~~~~i~SF~~~~l~~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~-~a~~i~~~~~~i~~~~~ 322 (733)
+.++++||++..|++++++.| ..+.+++.... ...+.. .+.. .+..+++.+..
T Consensus 138 ~~~~~~~v~v~SF~~~~l~~l~~~~p--~~~~~~l~~~~-------~~~~~~------~~~~~~~~~~~~~~~~------ 196 (249)
T PRK09454 138 WAGAAVPPLLSSFSEDALEAARQAAP--ELPRGLLLDEW-------PDDWLE------LTRRLGCVSLHLNHKL------ 196 (249)
T ss_pred hcCCCCCEEEEeCCHHHHHHHHHhCC--CCcEEEEeccc-------cccHHH------HHHhcCCeEEeccccc------
Confidence 235899999999999999998 67777633211 011111 1111 12334443322
Q ss_pred ccCCCCChHHHHHHHHcCCeEEEeecCCCCCcccCCCCChHHHHHHHHhcCCcccceEEecCCCCcccc
Q 004721 323 SLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPSAA 391 (733)
Q Consensus 323 ~~~~~~~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~~~~~l~~~G~~~VDgIiTD~P~~~~~~ 391 (733)
.++.+++.+|++|++|++||||++ ++|++++++| |||||||+|+.+...
T Consensus 197 -----~~~~~v~~~~~~g~~v~~WTvn~~------------~~~~~l~~~G---VdgIiTD~p~~~~~~ 245 (249)
T PRK09454 197 -----LDEARVAALKAAGLRILVYTVNDP------------ARARELLRWG---VDCICTDRIDLIGPD 245 (249)
T ss_pred -----CCHHHHHHHHHCCCEEEEEeCCCH------------HHHHHHHHcC---CCEEEeCChHhcCcc
Confidence 257899999999999999999875 8899999999 999999999987654
|
|
| >cd08612 GDPD_GDE4 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-44 Score=381.84 Aligned_cols=254 Identities=17% Similarity=0.196 Sum_probs=186.2
Q ss_pred CCCCCEEEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCCccccCccccccccccccccCCC
Q 004721 88 TGDPPFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGV 167 (733)
Q Consensus 88 ~~~~~~viaHRG~~~~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l~rtt~~~~~~~~~~~~~~~~g~ 167 (733)
...+|.||||||+++.+||||++||+.|++.||| +||+|||+||||++||+||++|+|+||+++
T Consensus 23 ~~~~~~iiAHRG~~~~~PENTl~Af~~A~~~Gad--~iE~DV~lTkDG~lVV~HD~~l~Rtt~~~g-------------- 86 (300)
T cd08612 23 SPFPCRHISHRGGSGENLENTMEAFEHAVKVGTD--MLELDVHLTKDGQVVVSHDENLLRSCGVDK-------------- 86 (300)
T ss_pred cCCCCCEEECCCCCCCCCccHHHHHHHHHHcCCC--EEEEEeeECcCCeEEEECCccccccCCCCc--------------
Confidence 4567899999999999999999999999999999 999999999999999999999999999876
Q ss_pred CCCccccccCCHHhhccccccccc-----cCCCCCCCCCCcccccHHHHHHhhCCCceEeeccCchhhhhcCCcHHHHHH
Q 004721 168 PTPGWFSIDYTLNDLSNIILNQGV-----YSRTDKFDGNGFQILTVQDMARQIKPPGLWLNIQHDAFYAQHNLSMRSFVL 242 (733)
Q Consensus 168 ~~~g~~v~d~T~~eL~~l~~~~~~-----~~~~~~~~g~~~~iptL~e~l~~~~~~~l~iEiK~~~~~~~~~~~~~~~v~ 242 (733)
.|.++||+||++++++..+ .+++..|.| ++||||+|+|++++...++||||.+.. .+++.++
T Consensus 87 -----~V~~~t~~eL~~l~~~~~~~~~~~~~~~~~~~g--~~IPtL~EvL~~~~~~~lnIEiK~~~~------~~~~~v~ 153 (300)
T cd08612 87 -----LVSDLNYADLPPYLEKLEVTFSPGDYCVPKGSD--RRIPLLEEVFEAFPDTPINIDIKVEND------ELIKKVS 153 (300)
T ss_pred -----ccccCCHHHHhhccccccccccCCccccccCCC--CCCCCHHHHHHhCCCCeEEEEECCCch------HHHHHHH
Confidence 7999999999999654321 122345555 899999999999988899999996531 3778899
Q ss_pred HHHhhcCC---ceeccCCHHHHHHHHHhcCCCcccchhhhcCC----------CccC--CCCCcchhHHHhhHHHHHhhc
Q 004721 243 SVSRSVVV---NYISSPEVNFLRSIAARFRPSMTKLVFRFLGK----------SEIE--PTTNQTYGSLLKNLTFIKTFA 307 (733)
Q Consensus 243 ~~l~~~~~---~~i~SF~~~~l~~l~~~~p~~~~~~~~~l~~~----------~~~~--~~~~~~~~~~~~~l~~~~~~a 307 (733)
+++++++. ++++||+++.|++++++.| +++++++ ... .... +.....+...... .....+.
T Consensus 154 ~~i~~~~~~~~v~isSF~~~~L~~~~~~~p--~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 229 (300)
T cd08612 154 DLVRKYKREDITVWGSFNDEIVKKCHKENP--NIPLFFS-LKRVLLLLLLYYTGLLPFIPIKESFLEIPMPS-IFLKTYF 229 (300)
T ss_pred HHHHHcCCCCcEEEEeCCHHHHHHHHHhCC--CccEEec-hHHHHHHHHHHHcccCccccCccccccccchh-hhhhhcc
Confidence 99999876 4999999999999999998 6666541 110 0000 0000000000000 0000000
Q ss_pred cc--ccCCccccccCCCccCCCCChHHHHHHHHcCCeEEEeecCCCCCcccCCCCChHHHHHHHHhcCCcccceEEecCC
Q 004721 308 SG--ILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFP 385 (733)
Q Consensus 308 ~~--i~~~~~~i~~~~~~~~~~~~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~~~~~l~~~G~~~VDgIiTD~P 385 (733)
.. .........+. .+...++++|+.+|++|++|++||||++ ++|++++++| |||||||+|
T Consensus 230 ~~~~~~~~~~~~~~~---~~~~~~~~~v~~~~~~G~~v~vWTVNd~------------~~~~~l~~~G---VdgIiTD~P 291 (300)
T cd08612 230 PKSMSRLNRFVLFLI---DWLLMRPSLFRHLQKRGIQVYGWVLNDE------------EEFERAFELG---ADGVMTDYP 291 (300)
T ss_pred cccccccccceeccc---ccccCCHHHHHHHHHCCCEEEEeecCCH------------HHHHHHHhcC---CCEEEeCCH
Confidence 00 00000000000 1223468999999999999999999875 8999999999 999999999
Q ss_pred CCccccc
Q 004721 386 LTPSAAV 392 (733)
Q Consensus 386 ~~~~~~l 392 (733)
+.+++++
T Consensus 292 ~~l~~~l 298 (300)
T cd08612 292 TKLREFL 298 (300)
T ss_pred HHHHHHH
Confidence 9877654
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function has not yet been elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests GDE4 may play some distinct role from other members of the GDE family. |
| >cd08581 GDPD_like_1 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-44 Score=367.00 Aligned_cols=221 Identities=14% Similarity=0.187 Sum_probs=167.9
Q ss_pred EEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCCccccCccccccccccccccCCCCCCccc
Q 004721 94 VVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPGWF 173 (733)
Q Consensus 94 viaHRG~~~~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l~rtt~~~~~~~~~~~~~~~~g~~~~g~~ 173 (733)
||||||+++.+||||++||+.|++.|+| +||+|||+||||++||+||.+|+|+||+.+ .
T Consensus 1 iiaHRG~~~~~PENTl~Af~~A~~~gad--~iE~DV~lTkDg~~Vv~HD~~l~r~t~~~~-------------------~ 59 (229)
T cd08581 1 LVAHRGYPARYPENTLVGFRAAVDAGAR--FVEFDVQLSADGVPVVFHDDTLLRLTGVEG-------------------L 59 (229)
T ss_pred CEeCCCCCCCCCccHHHHHHHHHHcCCC--EEEEeeeECCCCcEEEECCCccccccCCCc-------------------e
Confidence 6899999999999999999999999999 999999999999999999999999999876 7
Q ss_pred cccCCHHhhccccccccccCCCCCCCCCCcccccHHHHHHhhCC---CceEeeccCchhhhhcCCcHHHHHHHHHhhcC-
Q 004721 174 SIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKP---PGLWLNIQHDAFYAQHNLSMRSFVLSVSRSVV- 249 (733)
Q Consensus 174 v~d~T~~eL~~l~~~~~~~~~~~~~~g~~~~iptL~e~l~~~~~---~~l~iEiK~~~~~~~~~~~~~~~v~~~l~~~~- 249 (733)
|.++||+||++++++... +++..|.| ++||||+|+|+++++ ..++||+|.+.... ..+++.+.++++..+
T Consensus 60 v~~~t~~el~~l~~~~~~-~~~~~~~~--~~iptL~evl~~~~~~~~~~l~iEiK~~~~~~---~~~~~~v~~~~~~~~~ 133 (229)
T cd08581 60 LHELEDAELDSLRVAEPA-RFGSRFAG--EPLPSLAAVVQWLAQHPQVTLFVEIKTESLDR---FGLERVVDKVLRALPA 133 (229)
T ss_pred eccCCHHHHhhcccccCc-ccccccCC--ccCCCHHHHHHHHhhCCCceEEEEecCCcccc---cchhHHHHHHHHHHHh
Confidence 999999999999764321 23455666 899999999999853 67999999654221 123444455555443
Q ss_pred ---CceeccCCHHHHHHHHHhcCCCcccchhhhcCCCccCCCCCcchhHHHhhHHHHHh-hcccccCCccccccCCCccC
Q 004721 250 ---VNYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKT-FASGILVPKDYIWPVDESLY 325 (733)
Q Consensus 250 ---~~~i~SF~~~~l~~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~-~a~~i~~~~~~i~~~~~~~~ 325 (733)
.++|+||++++|++++++ | ..++++++.... ... ...+.. .+..+.+.+. +
T Consensus 134 ~~~~~~i~SF~~~~l~~~r~~-~--~~~~~~l~~~~~---------~~~----~~~~~~~~~~~~~~~~~-~-------- 188 (229)
T cd08581 134 VAAQRVLISFDYDLLALAKQQ-G--GPRTGWVLPDWD---------DAS----LAEADELQPDYLFCDKN-L-------- 188 (229)
T ss_pred ccCCeEEEeCCHHHHHHHHhc-C--CCCeEEEeccCC---------hHH----HHHHHhhCCCEEecccc-c--------
Confidence 358999999999999999 6 567665321110 000 000111 1222222211 0
Q ss_pred CCCChHHHHHHHHcCCeEEEeecCCCCCcccCCCCChHHHHHHHHhcCCcccceEEecCC
Q 004721 326 LLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFP 385 (733)
Q Consensus 326 ~~~~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~~~~~l~~~G~~~VDgIiTD~P 385 (733)
. ..++.+|++|++|++||||++ ++|++++++| |||||||+|
T Consensus 189 ---~-~~v~~~~~~G~~v~vWTVn~~------------~~~~~l~~~G---VdgiiTD~P 229 (229)
T cd08581 189 ---L-PDTGDLWAGTWKWVIYEVNEP------------AEALALAARG---VALIETDNI 229 (229)
T ss_pred ---C-hhhHHHHhCCceEEEEEcCCH------------HHHHHHHHhC---CcEEEcCCC
Confidence 1 358889999999999999875 8999999999 999999998
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity to Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. |
| >cd08565 GDPD_pAtGDE_like Glycerophosphodiester phosphodiesterase domain of putative Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-43 Score=363.52 Aligned_cols=231 Identities=19% Similarity=0.219 Sum_probs=182.9
Q ss_pred EEecCCCCCCCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeeccccccccccCCCcCCCcccccccccccCccccc
Q 004721 410 VISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIFSF 489 (733)
Q Consensus 410 iIaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L~rtt~v~~~~~~~r~~~~~~~~~~~g~~i~ 489 (733)
||||||+++.+||||++||++|++.|+|+||+|||+||||++||+||.+++|+|+ ++| .|.
T Consensus 1 iiaHRG~~~~~pENTl~af~~A~~~G~d~iE~DV~~TkDg~~Vv~HD~~l~r~t~------------------~~g-~v~ 61 (235)
T cd08565 1 IAGHRGGRNLWPENTLEGFRKALELGVDAVEFDVHLTADGEVVVIHDPTLDRTTH------------------GTG-AVR 61 (235)
T ss_pred CEecCCCCCCCCccHHHHHHHHHHcCCCEEEEeEEEccCCCEEEECCChhhcccC------------------CCC-cee
Confidence 6899999999999999999999999999999999999999999999999999999 777 799
Q ss_pred ccCHHHHhccCccccCCCccccccCCcCCCCCccccCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCCcHHHHHHHHH
Q 004721 490 SLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEAL 569 (733)
Q Consensus 490 d~T~~EL~~L~~~~~~~~~~~~~~~~~~~~g~~~IptLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~v~~~l 569 (733)
++|++||++|+++.+. +++||||+|+|+++++. + +.++||||.+.... ....+++.+++++
T Consensus 62 ~~t~~el~~l~~~~~~---------------~~~iptL~evl~~~~~~-~-~~l~iEiK~~~~~~--~~~~~~~~v~~~i 122 (235)
T cd08565 62 DLTLAERKALRLRDSF---------------GEKIPTLEEVLALFAPS-G-LELHVEIKTDADGT--PYPGAAALAAATL 122 (235)
T ss_pred eccHHHHhcCCCCCCC---------------CCCCCCHHHHHHHhhcc-C-cEEEEEECCCCCCC--ccHHHHHHHHHHH
Confidence 9999999999986431 37899999999999764 3 37999999653100 0125788999999
Q ss_pred HHcCCCCCCCceEEEEeCCHHHHHHHHhccCceEEEEeecccchhhhH--HHHHHHH-HHhHhcCCCcccccCCcccccc
Q 004721 570 GNAGYNKQTALKVMIQSTDSSVLMKLREKTSYELVYKVKENIRDALNQ--TIEDIKK-FADSVVLSKESVYPLNSAFITS 646 (733)
Q Consensus 570 ~~~~~~~~~~~~vii~Sfd~~~L~~lk~~p~~~~~~l~~~~~~~~~~~--~l~~i~~-~a~~i~~~~~~i~~~~~~~l~~ 646 (733)
+++++. ++++|+||+++.|++++++|++++++++.......... ....... .+..+++ ++ .+...
T Consensus 123 ~~~~~~----~~v~~~Sf~~~~l~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~---~~~~~ 190 (235)
T cd08565 123 RRHGLL----ERSVLTSFDPAVLTEVRKHPGVRTLGSVDEDMLERLGGELPFLTATALKAHIVAV-----EQ---SLLAA 190 (235)
T ss_pred HhCCCc----CCEEEEECCHHHHHHHHhCCCCcEEEEeccccccccccccchhhhhhccCcEEcc-----Cc---ccccC
Confidence 999988 79999999999999999889999999875321100000 0011111 1111111 11 11124
Q ss_pred chHHHHHHHHCCCcEEEEecCCcccccccccCCChHHHHHHHHhhcCcCEEEeCChHHH
Q 004721 647 ATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPMTA 705 (733)
Q Consensus 647 ~~~~v~~~~~~Gl~v~~wTvn~~~~~~~~~~~~d~~~e~~~~l~~~GVdgIiTD~P~~~ 705 (733)
++++++.+| +|++|++||||++. ++.+++ ++||||||||+|+.+
T Consensus 191 ~~~~v~~~~-~g~~v~~WTVn~~~-------------~~~~l~-~~GVdgIiTD~P~~~ 234 (235)
T cd08565 191 TWELVRAAV-PGLRLGVWTVNDDS-------------LIRYWL-ACGVRQLTTDRPDLA 234 (235)
T ss_pred CHHHHHHHh-CCCEEEEEccCCHH-------------HHHHHH-HcCCCEEEeCCcccc
Confidence 678899987 49999999999987 899997 999999999999864
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase (pAtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. |
| >cd08568 GDPD_TmGDE_like Glycerophosphodiester phosphodiesterase domain of Thermotoga maritime and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-43 Score=361.84 Aligned_cols=223 Identities=20% Similarity=0.219 Sum_probs=178.7
Q ss_pred eEEecCCCCCCCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeeccccccccccCCCcCCCcccccccccccCcccc
Q 004721 409 LVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIFS 488 (733)
Q Consensus 409 ~iIaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L~rtt~v~~~~~~~r~~~~~~~~~~~g~~i 488 (733)
+||||||+++.+||||++||++|++.|+|+||+|||+||||++||+||.+|+|+|| ++| .|
T Consensus 1 ~iiaHRG~~~~~pENTl~af~~A~~~Gad~iE~DV~lT~Dg~~Vv~HD~~l~R~t~------------------~~g-~v 61 (226)
T cd08568 1 IILGHRGYRAKYPENTLEAFKKAIEYGADGVELDVWLTKDGKLVVLHDENLKRVGG------------------VDL-KV 61 (226)
T ss_pred CEEeccCCCCCCCcchHHHHHHHHHcCcCEEEEEEEEcCCCCEEEECCCcccccCC------------------CCc-ee
Confidence 48999999999999999999999999999999999999999999999999999999 777 89
Q ss_pred cccCHHHHhccCccccCCCccccccCCcCCCCCccccCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCCcHHHHHHHH
Q 004721 489 FSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEA 568 (733)
Q Consensus 489 ~d~T~~EL~~L~~~~~~~~~~~~~~~~~~~~g~~~IptLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~v~~~ 568 (733)
.++|++||++++++ +++||||+|+|+++++. ..++||||.+. ..+.++++
T Consensus 62 ~~~t~~eL~~l~~~------------------g~~iPtL~evl~~~~~~---~~l~iEiK~~~---------~~~~~~~~ 111 (226)
T cd08568 62 KELTYKELKKLHPG------------------GELIPTLEEVFRALPND---AIINVEIKDID---------AVEPVLEI 111 (226)
T ss_pred ecCCHHHHhhCCCC------------------CCcCCCHHHHHHhcCCC---cEEEEEECCcc---------HHHHHHHH
Confidence 99999999999874 37899999999999774 37999999642 45688999
Q ss_pred HHHcCCCCCCCceEEEEeCCHHHHHHHHhc-cCceEEEEeecccchhhhHHHHHHHHH-HhHhcCCCcccccCCcccccc
Q 004721 569 LGNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDALNQTIEDIKKF-ADSVVLSKESVYPLNSAFITS 646 (733)
Q Consensus 569 l~~~~~~~~~~~~vii~Sfd~~~L~~lk~~-p~~~~~~l~~~~~~~~~~~~l~~i~~~-a~~i~~~~~~i~~~~~~~l~~ 646 (733)
++++++. ++++++||+++.|+.++++ |++++++++........ ........ +..+.++...+ .... ...
T Consensus 112 l~~~~~~----~~v~i~SF~~~~l~~~~~~~p~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~-~~~ 182 (226)
T cd08568 112 VEKFNAL----DRVIFSSFNHDALRELRKLDPDAKVGLLIGEEEEGFS--IPELHEKLKLYSLHVPIDAI--GYIG-FEK 182 (226)
T ss_pred HHHcCCC----CcEEEEECCHHHHHHHHHhCCCCcEEEEeeccccccC--HHHHHHhcCCcEeccchhhh--cccc-ccc
Confidence 9999987 7999999999999999999 99999999864211110 01111111 11122211111 0001 112
Q ss_pred chHHHHHHHHCCCcEEEEecCCcccccccccCCChHHHHHHHHhhcCcCEEEeCChHH
Q 004721 647 ATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPMT 704 (733)
Q Consensus 647 ~~~~v~~~~~~Gl~v~~wTvn~~~~~~~~~~~~d~~~e~~~~l~~~GVdgIiTD~P~~ 704 (733)
++++++.+|++|++|++||+|++. ++.++. ++ |||||||+|+.
T Consensus 183 ~~~~v~~~~~~G~~v~~WTvn~~~-------------~~~~l~-~~-vdgiiTD~p~~ 225 (226)
T cd08568 183 FVELLRLLRKLGLKIVLWTVNDPE-------------LVPKLK-GL-VDGVITDDVEK 225 (226)
T ss_pred cHHHHHHHHHCCCEEEEEcCCCHH-------------HHHHHH-hh-CCEEEccCccc
Confidence 589999999999999999999986 777775 65 99999999975
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermotoga maritime glycerophosphodiester phosphodiesterase (TmGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. TmGDE exists as a monomer that might be the biologically relevant form. |
| >cd08565 GDPD_pAtGDE_like Glycerophosphodiester phosphodiesterase domain of putative Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-43 Score=364.13 Aligned_cols=228 Identities=16% Similarity=0.131 Sum_probs=177.3
Q ss_pred EEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCCccccCccccccccccccccCCCCCCccc
Q 004721 94 VVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPGWF 173 (733)
Q Consensus 94 viaHRG~~~~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l~rtt~~~~~~~~~~~~~~~~g~~~~g~~ 173 (733)
||||||+++.+||||++||+.|++.|+| +||+|||+||||++||+||.+|+|+|++++ .
T Consensus 1 iiaHRG~~~~~pENTl~af~~A~~~G~d--~iE~DV~~TkDg~~Vv~HD~~l~r~t~~~g-------------------~ 59 (235)
T cd08565 1 IAGHRGGRNLWPENTLEGFRKALELGVD--AVEFDVHLTADGEVVVIHDPTLDRTTHGTG-------------------A 59 (235)
T ss_pred CEecCCCCCCCCccHHHHHHHHHHcCCC--EEEEeEEEccCCCEEEECCChhhcccCCCC-------------------c
Confidence 6899999999999999999999999999 999999999999999999999999999876 7
Q ss_pred cccCCHHhhccccccccccCCCCCCCCCCcccccHHHHHHhhC--CCceEeeccCchhhhhcCCcHHHHHHHHHhhcCC-
Q 004721 174 SIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIK--PPGLWLNIQHDAFYAQHNLSMRSFVLSVSRSVVV- 250 (733)
Q Consensus 174 v~d~T~~eL~~l~~~~~~~~~~~~~~g~~~~iptL~e~l~~~~--~~~l~iEiK~~~~~~~~~~~~~~~v~~~l~~~~~- 250 (733)
|.++||+||++|+++.++ | ++||||+|+|++++ ++.++||+|.+.... ....+++.++++++++++
T Consensus 60 v~~~t~~el~~l~~~~~~--------~--~~iptL~evl~~~~~~~~~l~iEiK~~~~~~-~~~~~~~~v~~~i~~~~~~ 128 (235)
T cd08565 60 VRDLTLAERKALRLRDSF--------G--EKIPTLEEVLALFAPSGLELHVEIKTDADGT-PYPGAAALAAATLRRHGLL 128 (235)
T ss_pred eeeccHHHHhcCCCCCCC--------C--CCCCCHHHHHHHhhccCcEEEEEECCCCCCC-ccHHHHHHHHHHHHhCCCc
Confidence 999999999999998753 3 79999999999995 468999999653110 112478889999999886
Q ss_pred --ceeccCCHHHHHHHHHhcCCCcccchhhhcCCCccCCCCCcchhHHHhhHHH-HHhhcccccCCccccccCCCccCCC
Q 004721 251 --NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTF-IKTFASGILVPKDYIWPVDESLYLL 327 (733)
Q Consensus 251 --~~i~SF~~~~l~~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~-~~~~a~~i~~~~~~i~~~~~~~~~~ 327 (733)
++++||+++.|++++++ | +.++++ +......... ..... +.. ....+..++++.... .
T Consensus 129 ~~v~~~Sf~~~~l~~~~~~-p--~~~~~~-l~~~~~~~~~--~~~~~----~~~~~~~~~~~~~~~~~~~---------~ 189 (235)
T cd08565 129 ERSVLTSFDPAVLTEVRKH-P--GVRTLG-SVDEDMLERL--GGELP----FLTATALKAHIVAVEQSLL---------A 189 (235)
T ss_pred CCEEEEECCHHHHHHHHhC-C--CCcEEE-Eecccccccc--ccccc----hhhhhhccCcEEccCcccc---------c
Confidence 49999999999999999 8 677776 3321111000 00000 000 111233333332211 1
Q ss_pred CChHHHHHHHHcCCeEEEeecCCCCCcccCCCCChHHHHHHHHhcCCcccceEEecCCCCc
Q 004721 328 PHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTP 388 (733)
Q Consensus 328 ~~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~~~~~l~~~G~~~VDgIiTD~P~~~ 388 (733)
.++++|+++|+ |++|++||||++ ++|++++++| |||||||+|+.+
T Consensus 190 ~~~~~v~~~~~-g~~v~~WTVn~~------------~~~~~l~~~G---VdgIiTD~P~~~ 234 (235)
T cd08565 190 ATWELVRAAVP-GLRLGVWTVNDD------------SLIRYWLACG---VRQLTTDRPDLA 234 (235)
T ss_pred CCHHHHHHHhC-CCEEEEEccCCH------------HHHHHHHHcC---CCEEEeCCcccc
Confidence 24789999974 999999999874 8999999999 999999999975
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase (pAtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. |
| >cd08562 GDPD_EcUgpQ_like Glycerophosphodiester phosphodiesterase domain in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase UgpQ and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-43 Score=360.72 Aligned_cols=228 Identities=22% Similarity=0.231 Sum_probs=185.6
Q ss_pred EEecCCCCCCCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeeccccccccccCCCcCCCcccccccccccCccccc
Q 004721 410 VISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIFSF 489 (733)
Q Consensus 410 iIaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L~rtt~v~~~~~~~r~~~~~~~~~~~g~~i~ 489 (733)
||||||+++.+||||++||++|++.|||+||+|||+||||++||+||.+|+|+|| ++| .|.
T Consensus 1 iiaHRG~~~~~pENT~~af~~A~~~gad~iE~Dv~~TkDg~lvv~HD~~l~r~t~------------------~~~-~i~ 61 (229)
T cd08562 1 IIAHRGASSLAPENTLAAFRAAAELGVRWVEFDVKLSGDGTLVLIHDDTLDRTTN------------------GSG-AVT 61 (229)
T ss_pred CEeCCCCCCCCCchHHHHHHHHHHcCCCEEEEEEeECCCCCEEEEcCCCCccccC------------------CCc-eee
Confidence 6999999999999999999999999999999999999999999999999999999 666 799
Q ss_pred ccCHHHHhccCccccCCCccccccCCcCCCCCccccCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCCcHHHHHHHHH
Q 004721 490 SLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEAL 569 (733)
Q Consensus 490 d~T~~EL~~L~~~~~~~~~~~~~~~~~~~~g~~~IptLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~v~~~l 569 (733)
++||+||++++.+.+. .+.|. +++||||+|+|+++++. + +.++||||.+... ...+++.+++++
T Consensus 62 ~lt~~el~~l~~~~~~---------~~~~~-~~~iptl~evl~~~~~~-~-~~l~iEiK~~~~~----~~~~~~~v~~~l 125 (229)
T cd08562 62 ELTWAELAQLDAGSWF---------SPEFA-GEPIPTLADVLELAREL-G-LGLNLEIKPDPGD----EALTARVVAAAL 125 (229)
T ss_pred cCcHHHHhhcCCCccc---------CCCCC-CCCCCCHHHHHHHHHhc-C-CEEEEEECCCCCc----cHHHHHHHHHHH
Confidence 9999999999986442 23444 48999999999999865 3 3899999965421 124778899999
Q ss_pred HHcCCCCCCCceEEEEeCCHHHHHHHHhc-cCceEEEEeecccchhhhHHHHHHHHHHhHhcCCCcccccCCccccccch
Q 004721 570 GNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNSAFITSAT 648 (733)
Q Consensus 570 ~~~~~~~~~~~~vii~Sfd~~~L~~lk~~-p~~~~~~l~~~~~~~~~~~~l~~i~~~a~~i~~~~~~i~~~~~~~l~~~~ 648 (733)
+++++.. ++|+++||+++.|+.+++. |+++++++......+ ..+.+ ..+++ ..+.+. +...++
T Consensus 126 ~~~~~~~---~~v~~~Sf~~~~l~~~~~~~p~~~~~~l~~~~~~~----~~~~~----~~~~~--~~~~~~---~~~~~~ 189 (229)
T cd08562 126 RELWPHA---SKLLLSSFSLEALRAARRAAPELPLGLLFDTLPAD----WLELL----AALGA--VSIHLN---YRGLTE 189 (229)
T ss_pred HHhcCCc---CCEEEECCCHHHHHHHHHhCCCCcEEEEecCCCcC----HHHHH----HHcCC--eEEecC---hhhCCH
Confidence 9998741 6999999999999999999 999999987542211 11111 22221 122222 223468
Q ss_pred HHHHHHHHCCCcEEEEecCCcccccccccCCChHHHHHHHHhhcCcCEEEeCCh
Q 004721 649 DIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFP 702 (733)
Q Consensus 649 ~~v~~~~~~Gl~v~~wTvn~~~~~~~~~~~~d~~~e~~~~l~~~GVdgIiTD~P 702 (733)
++++.+|++|++|++||+|++. ++.+++ ++||||||||+|
T Consensus 190 ~~v~~~~~~g~~v~~wTvn~~~-------------~~~~~~-~~gVdgiiTD~p 229 (229)
T cd08562 190 EQVKALKDAGYKLLVYTVNDPA-------------RAAELL-EWGVDAIFTDRP 229 (229)
T ss_pred HHHHHHHHCCCEEEEEeCCCHH-------------HHHHHH-HCCCCEEEcCCC
Confidence 8999999999999999999987 888887 999999999998
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), UgpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two distinct GP-GDEs. UgpQ gene from the E. coli ugp operon codes for a cytosolic phosphodiesterase GlpQ, which is the prototype of this family. Various glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG) |
| >cd08575 GDPD_GDE4_like Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-43 Score=369.10 Aligned_cols=240 Identities=20% Similarity=0.206 Sum_probs=180.6
Q ss_pred CEEEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCCccccCccccccccccccccCCCCCCc
Q 004721 92 PFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPG 171 (733)
Q Consensus 92 ~~viaHRG~~~~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l~rtt~~~~~~~~~~~~~~~~g~~~~g 171 (733)
|+||||||+++.+||||++||+.|++.|+| +||+|||+||||++||+||.+|+|+|++++
T Consensus 1 p~iiaHRG~~~~~pENTl~af~~A~~~G~d--~iE~DV~lT~Dg~~Vv~HD~~l~r~t~~~~------------------ 60 (264)
T cd08575 1 PLHIAHRGGAAEFPENTIAAFRHAVKNGAD--MLELDVQLTKDGQVVVFHDWDLDRLTGGSG------------------ 60 (264)
T ss_pred CeEEEeCCCCCCCCccHHHHHHHHHHcCCC--EEEEEEEECCCCCEEEEcCCcccceeCCce------------------
Confidence 679999999999999999999999999999 999999999999999999999999999876
Q ss_pred cccccCCHHhhccccccccccCCC------CCCCCCCcccccHHHHHHhhCCCceEeeccCchhhhhcCCcHHHHHHHHH
Q 004721 172 WFSIDYTLNDLSNIILNQGVYSRT------DKFDGNGFQILTVQDMARQIKPPGLWLNIQHDAFYAQHNLSMRSFVLSVS 245 (733)
Q Consensus 172 ~~v~d~T~~eL~~l~~~~~~~~~~------~~~~g~~~~iptL~e~l~~~~~~~l~iEiK~~~~~~~~~~~~~~~v~~~l 245 (733)
.|.++|++||++++++.++...+ ..+. +++||||+|+|+.+++..++||+|.+.. ..+++.+++++
T Consensus 61 -~v~~~t~~el~~l~~~~~~~~~~~~~~~~~~~~--~~~iptL~evl~~~~~~~l~iEiK~~~~-----~~~~~~v~~~i 132 (264)
T cd08575 61 -LVSDLTYAELPPLDAGYGYTFDGGKTGYPRGGG--DGRIPTLEEVFKAFPDTPINIDIKSPDA-----EELIAAVLDLL 132 (264)
T ss_pred -EEecCCHHHHHhcccCCccccCCCCcccccCCC--CCcCCcHHHHHHhCCCCeEEEEECCCCH-----HHHHHHHHHHH
Confidence 79999999999999998763221 1223 4799999999999988889999996542 24788899999
Q ss_pred hhcCC---ceeccCCHHHHHHHHHhcCCCcccchhhhcC---------CCccCCCCCcchhHHHhhHHHHHhhcccccCC
Q 004721 246 RSVVV---NYISSPEVNFLRSIAARFRPSMTKLVFRFLG---------KSEIEPTTNQTYGSLLKNLTFIKTFASGILVP 313 (733)
Q Consensus 246 ~~~~~---~~i~SF~~~~l~~l~~~~p~~~~~~~~~l~~---------~~~~~~~~~~~~~~~~~~l~~~~~~a~~i~~~ 313 (733)
+++++ ++++||++++|++++++.| ++++++.... .....+.... +..+..+.+.
T Consensus 133 ~~~~~~~~~~~~Sf~~~~l~~~~~~~p--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~ 198 (264)
T cd08575 133 EKYKREDRTVWGSTNPEYLRALHPENP--NLFESFSMTRCLLLYLALGYTGLLPFVPI------------KESFFEIPRP 198 (264)
T ss_pred HhccccceEEEEeCCHHHHHHHHHhCc--ccccccCchhHHHHHHHhheeccCCCCCC------------CceEEEeecc
Confidence 99876 4999999999999999988 4443321100 0000000000 0000011111
Q ss_pred ccccc--cCC----CccCCCCChHHHHHHHHcCCeEEEeecCCCCCcccCCCCChHHHHHHHHhcCCcccceEEecCCCC
Q 004721 314 KDYIW--PVD----ESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLT 387 (733)
Q Consensus 314 ~~~i~--~~~----~~~~~~~~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~~~~~l~~~G~~~VDgIiTD~P~~ 387 (733)
...+. ... ...+...++++|+.+|++|++|++||||++ ++|++++++| |||||||+|+.
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~~v~vWTVNd~------------~~~~~l~~~G---VdgIiTD~P~~ 263 (264)
T cd08575 199 VIVLETFTLGEGASIVAALLWWPNLFDHLRKRGIQVYLWVLNDE------------EDFEEAFDLG---ADGVMTDSPTK 263 (264)
T ss_pred cEEEEEeccccccchhhhhhcCHHHHHHHHhcCCcEEEEEECCH------------HHHHHHHhcC---CCEEEeCCccc
Confidence 00000 000 001123468899999999999999999975 8999999999 99999999986
Q ss_pred c
Q 004721 388 P 388 (733)
Q Consensus 388 ~ 388 (733)
+
T Consensus 264 ~ 264 (264)
T cd08575 264 L 264 (264)
T ss_pred C
Confidence 3
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function is not elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests mammalian GDE4 may play some distinct role from other members of mammalian GDEs family. Also included in this subfamily are uncharacterized mammalian glycerophosphodiester phosphodiesterase domain-containing protein 3 (GDPD3) and similar proteins which display very high sequence homology to mammalian GDE4. |
| >cd08610 GDPD_GDE6 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE6 and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-43 Score=371.75 Aligned_cols=256 Identities=17% Similarity=0.193 Sum_probs=188.8
Q ss_pred cCCcceEEecCCCCCCCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeeccccccccccCCCcCCCccccccccccc
Q 004721 404 KSANLLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAG 483 (733)
Q Consensus 404 ~~~~~~iIaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L~rtt~v~~~~~~~r~~~~~~~~~~ 483 (733)
..++|.||||||+++.+||||++||++|++.|||+||+|||+||||++||+||.+|+|+||.... ++.+ .
T Consensus 19 ~~~~~~IiAHRGa~~~aPENTl~AF~~A~~~Gad~IE~DV~lTkDG~lVV~HD~tL~Rtt~~~~~-~~~~---------~ 88 (316)
T cd08610 19 LGPKPTIIGHRGAPMLAPENTMMSFEKAIEHGAHGLETDVTLSYDGVPFLMHDFTLKRTTNIGEV-QPES---------A 88 (316)
T ss_pred cCCCCeEEECCCCCCCCCccHHHHHHHHHHcCCCEEEEEEEEccCCCEEEeCCCccccccCCCCc-cccc---------c
Confidence 34568899999999999999999999999999999999999999999999999999999995321 1111 1
Q ss_pred CcccccccCHHHHhccCccccCC----Cccccc---cCCcCCCCCccccCHHHHHHHHHhcCCCceEEEEecchhHHHhh
Q 004721 484 SGIFSFSLIWDEIQTLIPQISNP----YFKFKL---FRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEK 556 (733)
Q Consensus 484 ~g~~i~d~T~~EL~~L~~~~~~~----~~~~~~---~~~~~~~g~~~IptLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~ 556 (733)
.| .|.++||+||++++++.|.. |.+..+ .....+. +++||||+|+|+++++. + ..++||||.+....+
T Consensus 89 ~~-~V~~~TlaEL~~ld~g~wf~~~~~~~~~~~~~~~~~~~~~-~e~IPTLeEvL~~~~~~-~-~~l~IEIK~~~~~~~- 163 (316)
T cd08610 89 CE-NPAFFNWDFLSTLNAGKWFVKPRPFYNMKPLSEADKERAR-NQSIPKLSNFLRLAEKE-N-KLVIFDLYRPPPKHP- 163 (316)
T ss_pred cc-chhhCCHHHHhhCCCCCccCcccccccccccccccccccC-CCCCCCHHHHHHHhHhc-C-ceEEEEeCCCcccCc-
Confidence 23 68999999999999987632 100000 0011234 48999999999999875 2 279999996421110
Q ss_pred cCCcHHHHHHHHH-HHcCCCCCCCceEEEEeCCHHHHHHHHhc-cCceEEEEeecccchhhhHHHHHHHHHHhHhcCCCc
Q 004721 557 QGMSVTNSVMEAL-GNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKE 634 (733)
Q Consensus 557 ~~~~~~~~v~~~l-~~~~~~~~~~~~vii~Sfd~~~L~~lk~~-p~~~~~~l~~~~~~~~~~~~l~~i~~~a~~i~~~~~ 634 (733)
....+++.+++.+ +++++. +++++ ||++..++.+++. |++++++..... +..+.. .+ ..
T Consensus 164 ~~~~~~~~v~~~i~~~~~~~----~~~v~-sf~~~~l~~~~~~~P~~~~~l~~~~~--------~~~l~~----~~--~~ 224 (316)
T cd08610 164 YRHTWIRRVLEVILNEVGIE----QHLVL-WLPAHDRQYVQSVAPGFKQHVGRKVP--------IETLLK----NN--IS 224 (316)
T ss_pred chhHHHHHHHHHHHHHcCCC----CCEEE-EcCHHHHHHHHHHCcchhhhhccccc--------HHHHHH----cC--Ce
Confidence 0013677788876 677887 56666 5999999999999 999865432110 112211 11 12
Q ss_pred ccccCCccccccchHHHHHHHHCCCcEEEEecCCcccccccccCCChHHHHHHHHhhcCcCEEEeCChHHHHHHHH
Q 004721 635 SVYPLNSAFITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPMTAARYRS 710 (733)
Q Consensus 635 ~i~~~~~~~l~~~~~~v~~~~~~Gl~v~~wTvn~~~~~~~~~~~~d~~~e~~~~l~~~GVdgIiTD~P~~~~~~l~ 710 (733)
.+.+. +...++++++.+|++|++|++||||+++ ++.+++ ++||||||||+|+.+.++.+
T Consensus 225 ~l~~~---~~~l~~~~v~~a~~~Gl~V~vWTVNd~~-------------~~~~l~-~~GVDgIiTD~P~~l~~~~~ 283 (316)
T cd08610 225 ILNLA---YKKLFSNDIRDYKAANIHTNVYVINEPW-------------LFSLAW-CSGIHSVTTNNIHLLKQLDH 283 (316)
T ss_pred EEccc---hhhCCHHHHHHHHHCCCEEEEECCCCHH-------------HHHHHH-hCCcCEEEeCCHHHHHHhhc
Confidence 23332 2234689999999999999999999997 888886 99999999999999876543
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE6 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 4 (GDPD4)) and their metazoan homologs. Mammalian GDE6 is a transmembrane protein predominantly expressed in the spermatocytes of testis. Although the specific physiological function of mammalian GDE6 has not been elucidated, its different pattern of tissue distribution suggests it might play a critical role in the completion of meiosis during male germ cell differentiation. |
| >cd08574 GDPD_GDE_2_3_6 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2, GDE3, GDE6-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-43 Score=362.96 Aligned_cols=243 Identities=17% Similarity=0.192 Sum_probs=181.1
Q ss_pred cceEEecCCCCCCCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeeccccccccccCCCcCCCcccccccccccCcc
Q 004721 407 NLLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGI 486 (733)
Q Consensus 407 ~~~iIaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L~rtt~v~~~~~~~r~~~~~~~~~~~g~ 486 (733)
+|.||||||+++.+||||++||++|++.|+|+||+|||+||||++||+||.+|+|+||.... ++++. .+
T Consensus 1 ~~~iiAHRG~~~~aPENTl~Af~~A~~~Gad~iE~DV~lTkDg~lVV~HD~~l~Rtt~~~g~-~~~~~---------~~- 69 (252)
T cd08574 1 KPALIGHRGAPMLAPENTLMSFEKALEHGVYGLETDVTISYDGVPFLMHDRTLRRTTNVADV-FPERA---------HE- 69 (252)
T ss_pred CCeEEecCCCCCCCCccHHHHHHHHHHcCCCEEEEEEeEccCCcEEEeCCCcccccCCCCcc-ccccc---------cc-
Confidence 36899999999999999999999999999999999999999999999999999999994321 11111 12
Q ss_pred cccccCHHHHhccCccccCCCccc-------cccCCcCCCCCccccCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCC
Q 004721 487 FSFSLIWDEIQTLIPQISNPYFKF-------KLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGM 559 (733)
Q Consensus 487 ~i~d~T~~EL~~L~~~~~~~~~~~-------~~~~~~~~~g~~~IptLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~ 559 (733)
.|.++||+||++|+++.|+..... +......+. +++||||+|+|+++++. + ..++||||.+....+ ...
T Consensus 70 ~v~~~T~~eL~~ld~g~~f~~~~~~~~~~~~~~~~~~~~~-~~~IPtL~evl~~~~~~-~-~~l~iEiK~~~~~~~-~~~ 145 (252)
T cd08574 70 RASMFTWTDLQQLNAGQWFLKDDPFWTASSLSESDREEAG-NQSIPSLAELLRLAKKH-N-KSVIFDLRRPPPNHP-YYQ 145 (252)
T ss_pred chhcCCHHHHhhCCCCCcccCCCccchhcccccchhhhcC-CCCCCCHHHHHHHHHHc-C-CeEEEEecCCcccCc-cHH
Confidence 689999999999999876311000 000011345 48999999999999875 3 279999996531000 012
Q ss_pred cHHHHHHHHHHHcCCCCCCCceEEEEeCCHHHHHHHHhc-cCceEEEEeecccchhhhHHHHHHHHHHhHhcCCCccccc
Q 004721 560 SVTNSVMEALGNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYP 638 (733)
Q Consensus 560 ~~~~~v~~~l~~~~~~~~~~~~vii~Sfd~~~L~~lk~~-p~~~~~~l~~~~~~~~~~~~l~~i~~~a~~i~~~~~~i~~ 638 (733)
.++++++++++++++. ++++++||+.. ++.++++ |+++++++.... ...+.. .+ ...+.+
T Consensus 146 ~~~~~v~~~l~~~~~~----~~~v~~s~~~~-~~~~~~~~p~~~~~~~~~~~--------~~~~~~----~~--~~~~~~ 206 (252)
T cd08574 146 SYVNITLDTILASGIP----QHQVFWLPDEY-RALVRKVAPGFQQVSGRKLP--------VESLRE----NG--ISRLNL 206 (252)
T ss_pred HHHHHHHHHHHHcCCC----cccEEEccHHH-HHHHHHHCCCCeEeeccccc--------hHHHHh----cC--CeEEcc
Confidence 5788999999999987 56667666654 7999999 999988654321 111111 11 122333
Q ss_pred CCccccccchHHHHHHHHCCCcEEEEecCCcccccccccCCChHHHHHHHHhhcCcCEEEeC
Q 004721 639 LNSAFITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITE 700 (733)
Q Consensus 639 ~~~~~l~~~~~~v~~~~~~Gl~v~~wTvn~~~~~~~~~~~~d~~~e~~~~l~~~GVdgIiTD 700 (733)
. +...++++|+.+|++|++|++||||++. ++.+++ ++||||||||
T Consensus 207 ~---~~~~~~~~v~~~~~~g~~v~~WTVn~~~-------------~~~~l~-~~GVdgIiTD 251 (252)
T cd08574 207 E---YSQLSAQEIREYSKANISVNLYVVNEPW-------------LYSLLW-CSGVQSVTTN 251 (252)
T ss_pred C---cccCCHHHHHHHHHCCCEEEEEccCCHH-------------HHHHHH-HcCCCEEecC
Confidence 2 2234689999999999999999999997 899887 9999999999
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian glycerophosphodiester phosphodiesterase domain-containing protein subtype 5 (GDE2), subtype 2 (GDE3), subtype 1 (GDE6), and their eukaryotic homologs. Mammalian GDE2, GDE3, and GDE6 show very high sequence similarity to each other and have been classified into the same family. Although they are all transmembrane proteins, based on different pattern of tissue distribution, these enzymes might display diverse cellular functions. Mammalian GDE2 is primarily expressed in mature neurons. It selectively hydrolyzes glycerophosphocholine (GPC) and mainly functions in a complex with an antioxidant scavenger peroxiredoxin1 (Prdx1) to control motor neuron differentiation in the spinal cord. Mammalian GDE3 is specifically expressed in bo |
| >cd08564 GDPD_GsGDE_like Glycerophosphodiester phosphodiesterase domain of putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-43 Score=365.02 Aligned_cols=244 Identities=18% Similarity=0.138 Sum_probs=190.4
Q ss_pred cceEEecCCCCCC--CCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeecccccc--------ccccCCCcCCCcccc
Q 004721 407 NLLVISKNGASGD--YPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLIN--------STNAAQSKFNSITTT 476 (733)
Q Consensus 407 ~~~iIaHRG~~~~--~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L~r--------tt~v~~~~~~~r~~~ 476 (733)
+|+||||||+++. +||||++||++|++.|||+||+|||+||||++||+||.++++ +++
T Consensus 3 ~~~iiaHRG~~~~~~~pENTl~Af~~A~~~Gad~iE~DV~lTkDg~lVv~HD~~~~~~~~~~~~~~~~------------ 70 (265)
T cd08564 3 RPIIVGHRGAGCSTLYPENTLPSFRRALEIGVDGVELDVFLTKDNEIVVFHGTEDDTNPDTSIQLDDS------------ 70 (265)
T ss_pred CceEEEeCCCCCCCCCCchhHHHHHHHHHcCCCEEEEeeEECCCCCEEEEcCCccccCccccccccCC------------
Confidence 5899999999988 999999999999999999999999999999999999987665 444
Q ss_pred cccccccCcccccccCHHHHhccCccccCCCccccccCCcCCCCCccccCHHHHHHHHHhcCCCceEEEEecchhHHHhh
Q 004721 477 IPEIMAGSGIFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEK 556 (733)
Q Consensus 477 ~~~~~~~~g~~i~d~T~~EL~~L~~~~~~~~~~~~~~~~~~~~g~~~IptLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~ 556 (733)
++| .|.++|++||++++++.+.. ..+.+ ...+. +++||||+|+|+++++. ++++||||.+.
T Consensus 71 ------~~~-~v~~~t~~el~~l~~~~~~~--~~~~~-~~~~~-~~~iptL~evl~~~~~~---~~l~iEiK~~~----- 131 (265)
T cd08564 71 ------GFK-NINDLSLDEITRLHFKQLFD--EKPCG-ADEIK-GEKIPTLEDVLVTFKDK---LKYNIELKGRE----- 131 (265)
T ss_pred ------Ccc-chhhCcHHHHhhcccCcccc--cCccc-ccccC-CccCCCHHHHHHHhccC---cEEEEEeCCCc-----
Confidence 566 79999999999999986532 11111 11133 48999999999999875 48999999654
Q ss_pred cCCcHHHHHHHHHHHcCCCCCCCceEEEEeCCH-HHHHHHHhc-cC---ceEEEEeecccchhhhHHHHHHHHHHhHhcC
Q 004721 557 QGMSVTNSVMEALGNAGYNKQTALKVMIQSTDS-SVLMKLREK-TS---YELVYKVKENIRDALNQTIEDIKKFADSVVL 631 (733)
Q Consensus 557 ~~~~~~~~v~~~l~~~~~~~~~~~~vii~Sfd~-~~L~~lk~~-p~---~~~~~l~~~~~~~~~~~~l~~i~~~a~~i~~ 631 (733)
..+++.++++|+++++. ++|+|+||++ ++++++++. |+ +++++++...... ........+...+.
T Consensus 132 --~~~~~~v~~~l~~~~~~----~~v~i~SF~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~ 201 (265)
T cd08564 132 --VGLGERVLNLVEKYGMI----LQVHFSSFLHYDRLDLLKALRPNKLNVPIALLFNEVKSP----SPLDFLEQAKYYNA 201 (265)
T ss_pred --hhHHHHHHHHHHHcCCC----CCEEEEecCchhHHHHHHHhCcCCCCceEEEEecCCCCc----ccccHHHHHHhcCC
Confidence 24778999999999988 7999999999 999999999 98 9999998643110 01111112222221
Q ss_pred CCcccccCCccccccchHHHHHHHHCCCcEEEEe----cCCcccccccccCCChHHHHHHHHhhcCcCEEEeCChHHHHH
Q 004721 632 SKESVYPLNSAFITSATDIVQRLQSFKLPVYVET----FSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPMTAAR 707 (733)
Q Consensus 632 ~~~~i~~~~~~~l~~~~~~v~~~~~~Gl~v~~wT----vn~~~~~~~~~~~~d~~~e~~~~l~~~GVdgIiTD~P~~~~~ 707 (733)
..+.+. +...++++++.+|++|+.|++|| +|+.+ ++.+++ ++||||||||+|+.+.+
T Consensus 202 --~~v~~~---~~~~~~~~v~~~~~~Gl~v~~wT~~~~~n~~~-------------~~~~l~-~~GvdgiiTD~p~~~~~ 262 (265)
T cd08564 202 --TWVNFS---YDFWTEEFVKKAHENGLKVMTYFDEPVNDNEE-------------DYKVYL-ELGVDCICPNDPVLLVN 262 (265)
T ss_pred --ceeeec---hhhhhHHHHHHHHHcCCEEEEecCCCCCCCHH-------------HHHHHH-HcCCCEEEcCCHHHHHH
Confidence 122221 11236899999999999999999 45454 788887 99999999999999998
Q ss_pred HHH
Q 004721 708 YRS 710 (733)
Q Consensus 708 ~l~ 710 (733)
+++
T Consensus 263 ~~~ 265 (265)
T cd08564 263 FLK 265 (265)
T ss_pred hhC
Confidence 863
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase (GsGDE, EC 3.1.4.46) and its uncharacterized eukaryotic homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. |
| >cd08563 GDPD_TtGDE_like Glycerophosphodiester phosphodiesterase domain of Thermoanaerobacter tengcongensis and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-43 Score=358.63 Aligned_cols=229 Identities=25% Similarity=0.371 Sum_probs=188.3
Q ss_pred ceEEecCCCCCCCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeeccccccccccCCCcCCCcccccccccccCccc
Q 004721 408 LLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIF 487 (733)
Q Consensus 408 ~~iIaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L~rtt~v~~~~~~~r~~~~~~~~~~~g~~ 487 (733)
++||||||+++.+||||++||++|++.||++||+|||+||||++||+||.+|+|+|| ++| .
T Consensus 1 ~~iiaHRG~~~~~pENT~~Af~~A~~~g~~~vE~DV~~TkDg~~Vv~HD~~l~r~t~------------------~~~-~ 61 (230)
T cd08563 1 TLIFAHRGYSGTAPENTLLAFKKAIEAGADGIELDVHLTKDGQLVVIHDETVDRTTN------------------GKG-Y 61 (230)
T ss_pred CeEEEccCCCCCCCchhHHHHHHHHHcCCCEEEEEeeEcCCCCEEEECCCCcccccC------------------CCC-c
Confidence 368999999999999999999999999999999999999999999999999999999 666 7
Q ss_pred ccccCHHHHhccCccccCCCccccccCCcCCCCCccccCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCCcHHHHHHH
Q 004721 488 SFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVME 567 (733)
Q Consensus 488 i~d~T~~EL~~L~~~~~~~~~~~~~~~~~~~~g~~~IptLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~v~~ 567 (733)
|.++||+||++++.+.+.+ +.+. ++++|||+|+|+++++. + +.++||+|.+.... ..+++.+++
T Consensus 62 i~~~t~~el~~l~~~~~~~---------~~~~-~~~iptL~evl~~~~~~-~-~~l~leiK~~~~~~----~~~~~~l~~ 125 (230)
T cd08563 62 VKDLTLEELKKLDAGSWFD---------EKFT-GEKIPTLEEVLDLLKDK-D-LLLNIEIKTDVIHY----PGIEKKVLE 125 (230)
T ss_pred hhhCCHHHHHhcCCCCccC---------ccCC-CCcCCCHHHHHHHHHhc-C-cEEEEEECCCCCcC----hhHHHHHHH
Confidence 9999999999999875421 2233 47999999999999864 3 38999999764321 257889999
Q ss_pred HHHHcCCCCCCCceEEEEeCCHHHHHHHHhc-cCceEEEEeecccchhhhHHHHHHHHHHhHhcCCCcccccCCcccccc
Q 004721 568 ALGNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNSAFITS 646 (733)
Q Consensus 568 ~l~~~~~~~~~~~~vii~Sfd~~~L~~lk~~-p~~~~~~l~~~~~~~~~~~~l~~i~~~a~~i~~~~~~i~~~~~~~l~~ 646 (733)
+++++++. ++++++||++..++.+++. |++++++++...... ...++...+. ..+.+. +...
T Consensus 126 ~l~~~~~~----~~v~~~Sf~~~~l~~~~~~~p~~~~~~l~~~~~~~--------~~~~~~~~~~--~~v~~~---~~~~ 188 (230)
T cd08563 126 LVKEYNLE----DRVIFSSFNHESLKRLKKLDPKIKLALLYETGLQD--------PKDYAKKIGA--DSLHPD---FKLL 188 (230)
T ss_pred HHHHcCCC----CCEEEEcCCHHHHHHHHHHCCCCcEEEEecCcccC--------HHHHHHHhCC--EEEccC---chhc
Confidence 99999987 7999999999999999999 999999987643211 1122222211 122221 2234
Q ss_pred chHHHHHHHHCCCcEEEEecCCcccccccccCCChHHHHHHHHhhcCcCEEEeCCh
Q 004721 647 ATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFP 702 (733)
Q Consensus 647 ~~~~v~~~~~~Gl~v~~wTvn~~~~~~~~~~~~d~~~e~~~~l~~~GVdgIiTD~P 702 (733)
++++++.+|++|++|++||+|+.. ++.+++ ++|||||+||+|
T Consensus 189 ~~~~i~~~~~~g~~v~~Wtvn~~~-------------~~~~~~-~~GVdgi~TD~P 230 (230)
T cd08563 189 TEEVVEELKKRGIPVRLWTVNEEE-------------DMKRLK-DLGVDGIITNYP 230 (230)
T ss_pred CHHHHHHHHHCCCEEEEEecCCHH-------------HHHHHH-HCCCCEEeCCCC
Confidence 689999999999999999999987 899997 999999999998
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermoanaerobacter tengcongensis glycerophosphodiester phosphodiesterase (TtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Despite the fact that most of GDPD family members exist as the monomer, TtGDE can function as a dimeric unit. Its catalytic mechanism is based on the general base-acid catalysis, which is similar to that of phosphoinositide-specific phospholipases C (PI-PLCs, EC 3.1.4.11). A divalent metal cation is required for the enzyme activity of TtGDE. |
| >cd08568 GDPD_TmGDE_like Glycerophosphodiester phosphodiesterase domain of Thermotoga maritime and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-43 Score=358.08 Aligned_cols=221 Identities=18% Similarity=0.127 Sum_probs=173.2
Q ss_pred EEEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCCccccCccccccccccccccCCCCCCcc
Q 004721 93 FVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPGW 172 (733)
Q Consensus 93 ~viaHRG~~~~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l~rtt~~~~~~~~~~~~~~~~g~~~~g~ 172 (733)
+||||||+++.+||||++||++|++.|+| +||+|||+||||++||+||++|+|+||+++
T Consensus 1 ~iiaHRG~~~~~pENTl~af~~A~~~Gad--~iE~DV~lT~Dg~~Vv~HD~~l~R~t~~~g------------------- 59 (226)
T cd08568 1 IILGHRGYRAKYPENTLEAFKKAIEYGAD--GVELDVWLTKDGKLVVLHDENLKRVGGVDL------------------- 59 (226)
T ss_pred CEEeccCCCCCCCcchHHHHHHHHHcCcC--EEEEEEEEcCCCCEEEECCCcccccCCCCc-------------------
Confidence 48999999999999999999999999999 999999999999999999999999999876
Q ss_pred ccccCCHHhhccccccccccCCCCCCCCCCcccccHHHHHHhhCC-CceEeeccCchhhhhcCCcHHHHHHHHHhhcCC-
Q 004721 173 FSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKP-PGLWLNIQHDAFYAQHNLSMRSFVLSVSRSVVV- 250 (733)
Q Consensus 173 ~v~d~T~~eL~~l~~~~~~~~~~~~~~g~~~~iptL~e~l~~~~~-~~l~iEiK~~~~~~~~~~~~~~~v~~~l~~~~~- 250 (733)
.|.++||+||++++++ +++||||+|+|++++. ..++||||.+. .++.++++++++++
T Consensus 60 ~v~~~t~~eL~~l~~~-------------g~~iPtL~evl~~~~~~~~l~iEiK~~~--------~~~~~~~~l~~~~~~ 118 (226)
T cd08568 60 KVKELTYKELKKLHPG-------------GELIPTLEEVFRALPNDAIINVEIKDID--------AVEPVLEIVEKFNAL 118 (226)
T ss_pred eeecCCHHHHhhCCCC-------------CCcCCCHHHHHHhcCCCcEEEEEECCcc--------HHHHHHHHHHHcCCC
Confidence 7999999999999875 2799999999999975 68999999642 45778899998875
Q ss_pred --ceeccCCHHHHHHHHHhcCCCcccchhhhcCCCccCCCCCcchhHHHhhHHHHHhhcccccCCccccccCCCccCCCC
Q 004721 251 --NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTFASGILVPKDYIWPVDESLYLLP 328 (733)
Q Consensus 251 --~~i~SF~~~~l~~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~i~~~~~~i~~~~~~~~~~~ 328 (733)
++++||+++.|++++++.| ..+++++....... .....+ ... ..+.++++.+..+... +. ..
T Consensus 119 ~~v~i~SF~~~~l~~~~~~~p--~~~~~~l~~~~~~~-----~~~~~~---~~~--~~~~~~~~~~~~~~~~---~~-~~ 182 (226)
T cd08568 119 DRVIFSSFNHDALRELRKLDP--DAKVGLLIGEEEEG-----FSIPEL---HEK--LKLYSLHVPIDAIGYI---GF-EK 182 (226)
T ss_pred CcEEEEECCHHHHHHHHHhCC--CCcEEEEeeccccc-----cCHHHH---HHh--cCCcEeccchhhhccc---cc-cc
Confidence 5999999999999999998 67777633211100 000000 000 1133344433222100 11 12
Q ss_pred ChHHHHHHHHcCCeEEEeecCCCCCcccCCCCChHHHHHHHHhcCCcccceEEecCCCC
Q 004721 329 HTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLT 387 (733)
Q Consensus 329 ~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~~~~~l~~~G~~~VDgIiTD~P~~ 387 (733)
++++|+.+|++|++|++||||++ ++++++.+ + |||||||+|+.
T Consensus 183 ~~~~v~~~~~~G~~v~~WTvn~~------------~~~~~l~~-~---vdgiiTD~p~~ 225 (226)
T cd08568 183 FVELLRLLRKLGLKIVLWTVNDP------------ELVPKLKG-L---VDGVITDDVEK 225 (226)
T ss_pred cHHHHHHHHHCCCEEEEEcCCCH------------HHHHHHHh-h---CCEEEccCccc
Confidence 47899999999999999999874 77888754 6 99999999986
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermotoga maritime glycerophosphodiester phosphodiesterase (TmGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. TmGDE exists as a monomer that might be the biologically relevant form. |
| >cd08579 GDPD_memb_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-43 Score=358.18 Aligned_cols=219 Identities=21% Similarity=0.282 Sum_probs=183.9
Q ss_pred EEecCCCCCCCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeeccccccccccCCCcCCCcccccccccccCccccc
Q 004721 410 VISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIFSF 489 (733)
Q Consensus 410 iIaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L~rtt~v~~~~~~~r~~~~~~~~~~~g~~i~ 489 (733)
||||||+++.+||||++||++|++.|||+||+|||+||||++||+||.+|+|+|| ++| .|.
T Consensus 1 iiaHRG~~~~~pENT~~af~~A~~~Gad~vE~DV~~T~Dg~~vv~HD~~l~r~t~------------------~~~-~v~ 61 (220)
T cd08579 1 IIAHRGVSSNGVENTLEALEAAIKAKPDYVEIDVQETKDGQFVVMHDANLKRLAG------------------VNK-KVW 61 (220)
T ss_pred CeeccCCCCCCCccHHHHHHHHHHcCCCEEEEEeeEcCCCCEEEEcCCchhhccC------------------CCC-Chh
Confidence 6999999999999999999999999999999999999999999999999999999 666 799
Q ss_pred ccCHHHHhccCccccCCCccccccCCcCCCCCccccCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCCcHHHHHHHHH
Q 004721 490 SLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEAL 569 (733)
Q Consensus 490 d~T~~EL~~L~~~~~~~~~~~~~~~~~~~~g~~~IptLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~v~~~l 569 (733)
++|++||++++.+.+ +. +++||||+|+|++++++ + +.++||||.+... ...+.+.+++++
T Consensus 62 ~~t~~el~~l~~~~~-------------~~-~~~iptL~evl~~~~~~-~-~~l~iEiK~~~~~----~~~~~~~v~~~l 121 (220)
T cd08579 62 DLTLEELKKLTIGEN-------------GH-GAKIPSLDEYLALAKGL-K-QKLLIELKPHGHD----SPDLVEKFVKLY 121 (220)
T ss_pred hCCHHHHhcCcCccC-------------CC-CCcCCCHHHHHHHhhcc-C-CeEEEEECCCCCC----CHHHHHHHHHHH
Confidence 999999999998643 12 37899999999999884 3 3899999976521 235788999999
Q ss_pred HHcCCCCCCCceEEEEeCCHHHHHHHHhc-cCceEEEEeecccchhhhHHHHHHHHHHhHhcCCCcccccCCccccccch
Q 004721 570 GNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNSAFITSAT 648 (733)
Q Consensus 570 ~~~~~~~~~~~~vii~Sfd~~~L~~lk~~-p~~~~~~l~~~~~~~~~~~~l~~i~~~a~~i~~~~~~i~~~~~~~l~~~~ 648 (733)
+++++. ++++|+||++..++.+++. |+++++++......+. . ...++.+++ .+...++
T Consensus 122 ~~~~~~----~~v~v~Sf~~~~l~~~~~~~p~~~~~~~~~~~~~~~-----~--~~~~~~~~~----------~~~~~~~ 180 (220)
T cd08579 122 KQNLIE----NQHQVHSLDYRVIEKVKKLDPKIKTGYILPFNIGNL-----P--KTNVDFYSI----------EYSTLNK 180 (220)
T ss_pred HHcCCC----cCeEEEeCCHHHHHHHHHHCCCCeEEEEEecccCcc-----c--ccCceEEee----------ehhhcCH
Confidence 999988 7999999999999999998 9999999886432211 0 011112221 1223468
Q ss_pred HHHHHHHHCCCcEEEEecCCcccccccccCCChHHHHHHHHhhcCcCEEEeCCh
Q 004721 649 DIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFP 702 (733)
Q Consensus 649 ~~v~~~~~~Gl~v~~wTvn~~~~~~~~~~~~d~~~e~~~~l~~~GVdgIiTD~P 702 (733)
++++.+|++|++|++||+|++. ++..++ ++|||||+||+|
T Consensus 181 ~~v~~~~~~G~~v~~wtvn~~~-------------~~~~~~-~~Gvd~i~TD~P 220 (220)
T cd08579 181 EFIRQAHQNGKKVYVWTVNDPD-------------DMQRYL-AMGVDGIITDYP 220 (220)
T ss_pred HHHHHHHHCCCEEEEEcCCCHH-------------HHHHHH-HcCCCEEeCCCC
Confidence 9999999999999999999987 888887 999999999998
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial glycerophosphodiester phosphodiesterases. In addition to a C-terminal GDPD domain, most members in this family have an N-terminus that functions as a membrane anchor. |
| >cd08608 GDPD_GDE2 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2 and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=371.56 Aligned_cols=253 Identities=16% Similarity=0.198 Sum_probs=185.8
Q ss_pred cceEEecCCCCCCCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeeccccccccccCCCcCCCcccccccccccCcc
Q 004721 407 NLLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGI 486 (733)
Q Consensus 407 ~~~iIaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L~rtt~v~~~~~~~r~~~~~~~~~~~g~ 486 (733)
+|.||||||+++.+||||++||++|+++|||+||+|||+||||+|||+||.+|+||||.... +++++ ..
T Consensus 1 ~p~IIAHRGas~~aPENTL~AF~~A~~~GaD~IElDV~lTkDGvlVV~HD~tL~RtTn~~g~-v~~~~----------~~ 69 (351)
T cd08608 1 KPAIIGHRGAPMLAPENTLMSFQKALEQKVYGLQADVTISLDGVPFLMHDRTLRRTTNVDRV-FPERQ----------YE 69 (351)
T ss_pred CCeEEEcCCCCCCCCcchHHHHHHHHHcCCCEEEEEeeEccCCcEEEECCCccccccCCCCc-ccccc----------cc
Confidence 46899999999999999999999999999999999999999999999999999999994320 11111 01
Q ss_pred cccccCHHHHhccCccccC----CCcccc--cc-CCcCCCCCccccCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCC
Q 004721 487 FSFSLIWDEIQTLIPQISN----PYFKFK--LF-RNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGM 559 (733)
Q Consensus 487 ~i~d~T~~EL~~L~~~~~~----~~~~~~--~~-~~~~~~g~~~IptLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~ 559 (733)
.+.++||+||++|+++.|. ||+... +. ....+. +++||||+|+|+++++. + ..++||||.+....+ ...
T Consensus 70 ~~~~~TlaEL~~LdaG~wf~~~~p~~~~~~~~~~~~~~~~-ge~IPTL~EvL~~~~~~-~-~~l~iEIK~~~~~~~-~~~ 145 (351)
T cd08608 70 DASMFNWTDLERLNAGQWFLKDDPFWTAQSLSPSDRKEAG-NQSVCSLAELLELAKRY-N-ASVLLNLRRPPPNHP-YHQ 145 (351)
T ss_pred ccccCCHHHHhhCCCCcccccCCccccccccccccccccC-CCCCCCHHHHHHHHHhc-C-CeEEEEECCCcccCc-chh
Confidence 3578999999999998763 221111 01 111344 48999999999999875 3 279999996531110 112
Q ss_pred cHHHHHHHHHHHcCCCCCCCceEEEEeCCHHHHHHHHhc-cCceEEEEeecccchhhhHHHHHHHHHHhHhcCCCccccc
Q 004721 560 SVTNSVMEALGNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYP 638 (733)
Q Consensus 560 ~~~~~v~~~l~~~~~~~~~~~~vii~Sfd~~~L~~lk~~-p~~~~~~l~~~~~~~~~~~~l~~i~~~a~~i~~~~~~i~~ 638 (733)
.+++.+++++.++++.. ++|+++||+. ++.+|+. |+++++... . .....+. .++. ..+.+
T Consensus 146 ~~~~~v~~~i~~~~~~~---~~vi~sSf~~--~~~vr~l~P~~~~~~~~---~-----~~~~~~~----~~~~--~~l~~ 206 (351)
T cd08608 146 SWINLTLKTILASGIPQ---EQVMWTPDWQ--RKLVRKVAPGFQQTSGE---K-----LPVASLR----ERGI--TRLNL 206 (351)
T ss_pred HHHHHHHHHHHHhCCCc---CeEEEEcchH--HHHHHHHCCCCeeeccc---c-----chHHHHH----HcCC--eEEcc
Confidence 56788899999988752 5888888876 4789999 999875211 0 0112221 1221 22333
Q ss_pred CCccccccchHHHHHHHHCCCcEEEEecCCcccccccccCCChHHHHHHHHhhcCcCEEEeCChHHHHHHHH
Q 004721 639 LNSAFITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPMTAARYRS 710 (733)
Q Consensus 639 ~~~~~l~~~~~~v~~~~~~Gl~v~~wTvn~~~~~~~~~~~~d~~~e~~~~l~~~GVdgIiTD~P~~~~~~l~ 710 (733)
. +...++++++.+|++|++|++||||++. ++.+++ ++||||||||+|+.+.+...
T Consensus 207 ~---~~~lt~~~v~~~~~~Gl~V~vWTVN~~~-------------~~~~l~-~~GVdgIiTD~P~~l~~l~~ 261 (351)
T cd08608 207 R---YTQASAQEIRDYSASNLSVNLYTVNEPW-------------LYSLLW-CSGVPSVTSDASHVLRKVPF 261 (351)
T ss_pred c---hhhcCHHHHHHHHHCCCEEEEEecCCHH-------------HHHHHH-HCCCCEEEECCHHHHHHhhh
Confidence 2 2234789999999999999999999997 888886 99999999999999987543
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE2 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 5 (GDPD5)) and their metazoan homologs. Mammalian GDE2 is transmembrane protein primarily expressed in mature neurons. It is a mammalian homolog of bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Mammalian GDE2 selectively hydrolyzes glycerophosphocholine (GPC) and has been characterized as GPC-GDE (EC 3.1.4.2) that contributes to osmotic regulation of cellular GPC. Mammalian GDE2 functions in a complex with an antioxidant scavenger peroxiredoxin1 (Prdx1) to control motor neuron differenti |
| >cd08575 GDPD_GDE4_like Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-43 Score=365.62 Aligned_cols=246 Identities=19% Similarity=0.245 Sum_probs=185.8
Q ss_pred ceEEecCCCCCCCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeeccccccccccCCCcCCCcccccccccccCccc
Q 004721 408 LLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIF 487 (733)
Q Consensus 408 ~~iIaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L~rtt~v~~~~~~~r~~~~~~~~~~~g~~ 487 (733)
|.||||||+++.+||||++||++|+++|+|+||+|||+||||++||+||.+|+|+|| ++| .
T Consensus 1 p~iiaHRG~~~~~pENTl~af~~A~~~G~d~iE~DV~lT~Dg~~Vv~HD~~l~r~t~------------------~~~-~ 61 (264)
T cd08575 1 PLHIAHRGGAAEFPENTIAAFRHAVKNGADMLELDVQLTKDGQVVVFHDWDLDRLTG------------------GSG-L 61 (264)
T ss_pred CeEEEeCCCCCCCCccHHHHHHHHHHcCCCEEEEEEEECCCCCEEEEcCCcccceeC------------------Cce-E
Confidence 679999999999999999999999999999999999999999999999999999999 667 8
Q ss_pred ccccCHHHHhccCccccCCCccccccCCcCCCCCccccCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCCcHHHHHHH
Q 004721 488 SFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVME 567 (733)
Q Consensus 488 i~d~T~~EL~~L~~~~~~~~~~~~~~~~~~~~g~~~IptLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~v~~ 567 (733)
|.++|++||++++++.+....+...+....+. +++||||+|+|+.+++. .++||||.+.. ..+++.+++
T Consensus 62 v~~~t~~el~~l~~~~~~~~~~~~~~~~~~~~-~~~iptL~evl~~~~~~----~l~iEiK~~~~------~~~~~~v~~ 130 (264)
T cd08575 62 VSDLTYAELPPLDAGYGYTFDGGKTGYPRGGG-DGRIPTLEEVFKAFPDT----PINIDIKSPDA------EELIAAVLD 130 (264)
T ss_pred EecCCHHHHHhcccCCccccCCCCcccccCCC-CCcCCcHHHHHHhCCCC----eEEEEECCCCH------HHHHHHHHH
Confidence 99999999999998764321100001111233 48999999999998653 89999997642 257889999
Q ss_pred HHHHcCCCCCCCceEEEEeCCHHHHHHHHhc-cCceEEEEeecccchhh----hHHH--HHHHHHHhHhcCCC-------
Q 004721 568 ALGNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDAL----NQTI--EDIKKFADSVVLSK------- 633 (733)
Q Consensus 568 ~l~~~~~~~~~~~~vii~Sfd~~~L~~lk~~-p~~~~~~l~~~~~~~~~----~~~l--~~i~~~a~~i~~~~------- 633 (733)
+++++++. ++++++||++++|+++++. |+++++++......... .... ...+..+..+.+..
T Consensus 131 ~i~~~~~~----~~~~~~Sf~~~~l~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (264)
T cd08575 131 LLEKYKRE----DRTVWGSTNPEYLRALHPENPNLFESFSMTRCLLLYLALGYTGLLPFVPIKESFFEIPRPVIVLETFT 206 (264)
T ss_pred HHHhcccc----ceEEEEeCCHHHHHHHHHhCcccccccCchhHHHHHHHhheeccCCCCCCCceEEEeecccEEEEEec
Confidence 99999988 7999999999999999999 99887766532100000 0000 00000000000000
Q ss_pred ---cccccCCccccccchHHHHHHHHCCCcEEEEecCCcccccccccCCChHHHHHHHHhhcCcCEEEeCChHH
Q 004721 634 ---ESVYPLNSAFITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPMT 704 (733)
Q Consensus 634 ---~~i~~~~~~~l~~~~~~v~~~~~~Gl~v~~wTvn~~~~~~~~~~~~d~~~e~~~~l~~~GVdgIiTD~P~~ 704 (733)
..+.+ .+...++++++.+|++|++|++||||+.. ++.+++ ++||||||||+|+.
T Consensus 207 ~~~~~~~~---~~~~~~~~~v~~~~~~G~~v~vWTVNd~~-------------~~~~l~-~~GVdgIiTD~P~~ 263 (264)
T cd08575 207 LGEGASIV---AALLWWPNLFDHLRKRGIQVYLWVLNDEE-------------DFEEAF-DLGADGVMTDSPTK 263 (264)
T ss_pred cccccchh---hhhhcCHHHHHHHHhcCCcEEEEEECCHH-------------HHHHHH-hcCCCEEEeCCccc
Confidence 00111 22345789999999999999999999997 899987 99999999999985
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function is not elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests mammalian GDE4 may play some distinct role from other members of mammalian GDEs family. Also included in this subfamily are uncharacterized mammalian glycerophosphodiester phosphodiesterase domain-containing protein 3 (GDPD3) and similar proteins which display very high sequence homology to mammalian GDE4. |
| >cd08609 GDPD_GDE3 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE3 and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-42 Score=367.81 Aligned_cols=250 Identities=18% Similarity=0.190 Sum_probs=186.7
Q ss_pred cceEEecCCCCCCCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeeccccccccccCCCcCCCcccccccccccCcc
Q 004721 407 NLLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGI 486 (733)
Q Consensus 407 ~~~iIaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L~rtt~v~~~~~~~r~~~~~~~~~~~g~ 486 (733)
+|.||||||+++.+||||++||++|++.|+|+||+|||+||||++||+||.+|+|+||.... ++.+. ..
T Consensus 26 ~~~IIAHRGas~~aPENTl~AF~~Ai~~GaD~IE~DV~lTkDG~lVV~HD~tL~Rtt~~~g~-~~~~~----------~~ 94 (315)
T cd08609 26 KPALVGHRGAPMLAPENTLMSLRKSLECGVVVFETDVMVSKDGVPFLMHDEGLLRTTNVKDV-FPGRD----------AA 94 (315)
T ss_pred CCeEEECCCCCCCCCccHHHHHHHHHHcCCCEEEEEEEECCCCCEEEeCCCcccccCCCCCC-ccccc----------cc
Confidence 47899999999999999999999999999999999999999999999999999999993210 00000 01
Q ss_pred cccccCHHHHhccCccccCCCcccccc---------CCcCCCCCccccCHHHHHHHHHhcCCCceEEEEecchhHHHhhc
Q 004721 487 FSFSLIWDEIQTLIPQISNPYFKFKLF---------RNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQ 557 (733)
Q Consensus 487 ~i~d~T~~EL~~L~~~~~~~~~~~~~~---------~~~~~~g~~~IptLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~~ 557 (733)
.|.++|++||++++++.|... ..++ ....+. +++||||+|+|+++++. + ..++||||.+.... ..
T Consensus 95 ~V~dlTlaEL~~ld~g~wf~~--~~~~~~~~~~~~~~~~~~~-ge~IPTL~EvL~~~~~~-~-~~l~IEIK~~~~~~-~~ 168 (315)
T cd08609 95 GSNNFTWTELKTLNAGSWFLE--RRPFWTLSSLSEEDRREAD-NQTVPSLSELLDLAKKH-N-VSIMFDLRNENNSH-VF 168 (315)
T ss_pred cHhhCCHHHHhhCCCCcccCc--ccccccccccccccccccC-CCCCCCHHHHHHHHHhc-C-CEEEEEeCCCCCCC-cc
Confidence 489999999999999865321 0000 001234 48999999999999875 3 27999999652100 00
Q ss_pred CCcHHHHHHHHHHHcCCCCCCCceEEEEeCCHHHHHHHHhc-cCceEEEEeecccchhhhHHHHHHHHHHhHhcCCCccc
Q 004721 558 GMSVTNSVMEALGNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESV 636 (733)
Q Consensus 558 ~~~~~~~v~~~l~~~~~~~~~~~~vii~Sfd~~~L~~lk~~-p~~~~~~l~~~~~~~~~~~~l~~i~~~a~~i~~~~~~i 636 (733)
...+.+.++++++++++.. ++++ +|++..++.+++. |++++++.... ......+. .+
T Consensus 169 ~~~f~~~vl~~i~~~~~~~---~~v~--~~~~~~l~~~~~~~P~~~~~~~~~~----------~~~~~~~~-------~i 226 (315)
T cd08609 169 YSSFVFYTLETILKLGIPP---DKVW--WLPDEYRHDVMKMEPGFKQVYGRQK----------EMLMDGGN-------FM 226 (315)
T ss_pred HHHHHHHHHHHHHHcCCCc---ceEE--EeCHHHHHHHHHhCcCceeecccch----------hhHhcCCe-------EE
Confidence 1257788999999999762 3444 3478899999999 99998754310 00111111 22
Q ss_pred ccCCccccccchHHHHHHHHCCCcEEEEecCCcccccccccCCChHHHHHHHHhhcCcCEEEeCChHHHHHHHHhh
Q 004721 637 YPLNSAFITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPMTAARYRSKL 712 (733)
Q Consensus 637 ~~~~~~~l~~~~~~v~~~~~~Gl~v~~wTvn~~~~~~~~~~~~d~~~e~~~~l~~~GVdgIiTD~P~~~~~~l~~~ 712 (733)
.+. +...++++|+.+|++|++|++||||++. ++.+++ ++||||||||+|+.+.+.++..
T Consensus 227 ~~~---~~~l~~~~v~~~~~~G~~v~vWTVNd~~-------------~~~~l~-~~GVDgIiTD~P~~l~~~~~~~ 285 (315)
T cd08609 227 NLP---YQDLSALEIKELRKDNVSVNLWVVNEPW-------------LFSLLW-CSGVSSVTTNACQLLKDMSKPI 285 (315)
T ss_pred ecc---cccCCHHHHHHHHHCCCEEEEECCCCHH-------------HHHHHH-hcCCCEEEcCCHHHHHHhhhhh
Confidence 221 2234688999999999999999999997 899997 9999999999999999887755
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE3 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 2 (GDPD2), Osteoblast differentiation promoting factor) and their metazoan homologs. Mammalian GDE3 is a transmembrane protein specifically expressed in bone tissues and spleen. It is a mammalian homolog of bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Mammalian GDE3 has been characterized as glycerophosphoinositol inositolphosphodiesterase (EC 3.1.4.43) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate inositol 1-phosphate (Ins1P) and glycerol. Mammalia |
| >cd08562 GDPD_EcUgpQ_like Glycerophosphodiester phosphodiesterase domain in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase UgpQ and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-42 Score=356.34 Aligned_cols=223 Identities=19% Similarity=0.187 Sum_probs=179.5
Q ss_pred EEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCCccccCccccccccccccccCCCCCCccc
Q 004721 94 VVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPGWF 173 (733)
Q Consensus 94 viaHRG~~~~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l~rtt~~~~~~~~~~~~~~~~g~~~~g~~ 173 (733)
||||||+++.+||||++||+.|++.|+| +||+|||+||||++||+||.+|+|+|++.+ .
T Consensus 1 iiaHRG~~~~~pENT~~af~~A~~~gad--~iE~Dv~~TkDg~lvv~HD~~l~r~t~~~~-------------------~ 59 (229)
T cd08562 1 IIAHRGASSLAPENTLAAFRAAAELGVR--WVEFDVKLSGDGTLVLIHDDTLDRTTNGSG-------------------A 59 (229)
T ss_pred CEeCCCCCCCCCchHHHHHHHHHHcCCC--EEEEEEeECCCCCEEEEcCCCCccccCCCc-------------------e
Confidence 6899999999999999999999999999 999999999999999999999999999876 7
Q ss_pred cccCCHHhhccccccccccCCCCCCCCCCcccccHHHHHHhhC--CCceEeeccCchhhhhcCCcHHHHHHHHHhhcCC-
Q 004721 174 SIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIK--PPGLWLNIQHDAFYAQHNLSMRSFVLSVSRSVVV- 250 (733)
Q Consensus 174 v~d~T~~eL~~l~~~~~~~~~~~~~~g~~~~iptL~e~l~~~~--~~~l~iEiK~~~~~~~~~~~~~~~v~~~l~~~~~- 250 (733)
|+++||+||++++.+.|+ ...|.+ ++||||+|+|++++ ++.++||+|.+... ...+++.+++++++++.
T Consensus 60 i~~lt~~el~~l~~~~~~---~~~~~~--~~iptl~evl~~~~~~~~~l~iEiK~~~~~---~~~~~~~v~~~l~~~~~~ 131 (229)
T cd08562 60 VTELTWAELAQLDAGSWF---SPEFAG--EPIPTLADVLELARELGLGLNLEIKPDPGD---EALTARVVAAALRELWPH 131 (229)
T ss_pred eecCcHHHHhhcCCCccc---CCCCCC--CCCCCHHHHHHHHHhcCCEEEEEECCCCCc---cHHHHHHHHHHHHHhcCC
Confidence 999999999999998764 344555 79999999999995 46799999965322 12467788999998875
Q ss_pred ---ceeccCCHHHHHHHHHhcCCCcccchhhhcCCCccCCCCCcchhHHHhhHHHHHhhcccccCCccccccCCCccCCC
Q 004721 251 ---NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTFASGILVPKDYIWPVDESLYLL 327 (733)
Q Consensus 251 ---~~i~SF~~~~l~~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~i~~~~~~i~~~~~~~~~~ 327 (733)
++++||+++.++++++..| ..++++ +..... ..+..+ +..+ .+.++.+.+..
T Consensus 132 ~~~v~~~Sf~~~~l~~~~~~~p--~~~~~~-l~~~~~------~~~~~~---~~~~--~~~~~~~~~~~----------- 186 (229)
T cd08562 132 ASKLLLSSFSLEALRAARRAAP--ELPLGL-LFDTLP------ADWLEL---LAAL--GAVSIHLNYRG----------- 186 (229)
T ss_pred cCCEEEECCCHHHHHHHHHhCC--CCcEEE-EecCCC------cCHHHH---HHHc--CCeEEecChhh-----------
Confidence 4899999999999999998 667765 222110 111111 1111 13334443332
Q ss_pred CChHHHHHHHHcCCeEEEeecCCCCCcccCCCCChHHHHHHHHhcCCcccceEEecCC
Q 004721 328 PHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFP 385 (733)
Q Consensus 328 ~~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~~~~~l~~~G~~~VDgIiTD~P 385 (733)
.++++|+.+|++|++|++||||++ +++++++++| |||||||+|
T Consensus 187 ~~~~~v~~~~~~g~~v~~wTvn~~------------~~~~~~~~~g---VdgiiTD~p 229 (229)
T cd08562 187 LTEEQVKALKDAGYKLLVYTVNDP------------ARAAELLEWG---VDAIFTDRP 229 (229)
T ss_pred CCHHHHHHHHHCCCEEEEEeCCCH------------HHHHHHHHCC---CCEEEcCCC
Confidence 247899999999999999999875 8899999999 999999998
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), UgpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two distinct GP-GDEs. UgpQ gene from the E. coli ugp operon codes for a cytosolic phosphodiesterase GlpQ, which is the prototype of this family. Various glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG) |
| >cd08582 GDPD_like_2 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-42 Score=356.04 Aligned_cols=228 Identities=22% Similarity=0.279 Sum_probs=185.8
Q ss_pred EEecCCCCCCCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeeccccccccccCCCcCCCcccccccccccCccccc
Q 004721 410 VISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIFSF 489 (733)
Q Consensus 410 iIaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L~rtt~v~~~~~~~r~~~~~~~~~~~g~~i~ 489 (733)
||||||+++.+||||++||++|++.|+++||+||++||||++||+||.+++|+|| +.| .|.
T Consensus 1 iiaHRG~~~~~pENTl~af~~A~~~G~~~vE~Dv~lTkDg~~Vv~HD~~l~r~t~------------------~~~-~i~ 61 (233)
T cd08582 1 VIAHRGASAEAPENTLAAFELAWEQGADGIETDVRLTKDGELVCVHDPTLKRTSG------------------GDG-AVS 61 (233)
T ss_pred CEeCCCCCCCCCchHHHHHHHHHHcCCCEEEEEEEEccCCCEEEecCCccccccC------------------CCc-chh
Confidence 6999999999999999999999999999999999999999999999999999999 566 799
Q ss_pred ccCHHHHhccCccccCCCccccccCCcCCCCCccccCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCCcHHHHHHHHH
Q 004721 490 SLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEAL 569 (733)
Q Consensus 490 d~T~~EL~~L~~~~~~~~~~~~~~~~~~~~g~~~IptLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~v~~~l 569 (733)
++||+||++++++.+.. ..+. +++||||+|+|++++++ + +.++||||.+. .+..+++.+++++
T Consensus 62 ~~t~~el~~l~~~~~~~---------~~~~-~~~iptL~evl~~~~~~-~-~~l~ieiK~~~-----~~~~~~~~~~~~~ 124 (233)
T cd08582 62 DLTLAELRKLDIGSWKG---------ESYK-GEKVPTLEEYLAIVPKY-G-KKLFIEIKHPR-----RGPEAEEELLKLL 124 (233)
T ss_pred hCCHHHHhcCCCCcccC---------CCCC-CCcCCCHHHHHHHHHhc-C-ceEEEEeCCCc-----cCccHHHHHHHHH
Confidence 99999999999875421 2344 48999999999999985 3 38999999751 1246788999999
Q ss_pred HHcC-CCCCCCceEEEEeCCHHHHHHHHhc-cCceEEEEeecccchhhhHHHHHHHHH-HhHhcCCCcccccCCccccc-
Q 004721 570 GNAG-YNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDALNQTIEDIKKF-ADSVVLSKESVYPLNSAFIT- 645 (733)
Q Consensus 570 ~~~~-~~~~~~~~vii~Sfd~~~L~~lk~~-p~~~~~~l~~~~~~~~~~~~l~~i~~~-a~~i~~~~~~i~~~~~~~l~- 645 (733)
++++ +. ++|+++||++..++.++++ |+++++++.......... ...+... +.++.+ . +..
T Consensus 125 ~~~~~~~----~~v~~~Sf~~~~l~~~~~~~p~~~~~~l~~~~~~~~~~--~~~~~~~~~~~i~~-------~---~~~~ 188 (233)
T cd08582 125 KESGLLP----EQIVIISFDAEALKRVRELAPTLETLWLRNYKSPKEDP--RPLAKSGGAAGLDL-------S---YEKK 188 (233)
T ss_pred HHcCCCC----CCEEEEecCHHHHHHHHHHCCCCcEEEEeccCccccch--hHHHHhhCceEEcc-------c---cccc
Confidence 9994 55 7999999999999999999 999999997543211000 0011111 122222 1 112
Q ss_pred cchHHHHHHHHCCCcEEEEecCCcccccccccCCChHHHHHHHHhhcCcCEEEeCChH
Q 004721 646 SATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPM 703 (733)
Q Consensus 646 ~~~~~v~~~~~~Gl~v~~wTvn~~~~~~~~~~~~d~~~e~~~~l~~~GVdgIiTD~P~ 703 (733)
.++++++.+|++|++|++||+|+.. ++.+++ ++|||||+||+|+
T Consensus 189 ~~~~~v~~~~~~G~~v~~wTvn~~~-------------~~~~l~-~~GVdgi~TD~p~ 232 (233)
T cd08582 189 LNPAFIKALRDAGLKLNVWTVDDAE-------------DAKRLI-ELGVDSITTNRPG 232 (233)
T ss_pred CCHHHHHHHHHCCCEEEEEeCCCHH-------------HHHHHH-HCCCCEEEcCCCC
Confidence 4689999999999999999999997 899997 9999999999996
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity to Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. |
| >cd08606 GDPD_YPL110cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL110cp and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-42 Score=365.24 Aligned_cols=257 Identities=16% Similarity=0.184 Sum_probs=191.3
Q ss_pred ceEEecCCCCCCCC--------CchHHHHHHHHHCCCCeeecCceeecCCeEEEeeccccccccccCCCcCCCccccccc
Q 004721 408 LLVISKNGASGDYP--------SCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPE 479 (733)
Q Consensus 408 ~~iIaHRG~~~~~P--------ENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L~rtt~v~~~~~~~r~~~~~~ 479 (733)
+.||||||+++.+| |||++||+.|+++|+|+||+|||+||||++||+||.+|+|+ |
T Consensus 2 ~~iiaHRG~~~~~p~~~~~~~pENTl~af~~A~~~g~d~vE~DV~lTkDg~~VV~HD~~l~rt-~--------------- 65 (286)
T cd08606 2 VQVIGHRGLGKNTAERKSLQLGENTVESFILAASLGASYVEVDVQLTKDLVPVIYHDFLVSET-G--------------- 65 (286)
T ss_pred ceEEEeCCCCCCcccccccCcCcchHHHHHHHHHcCCCEEEEEEEEccCCEEEEeCCCeeccC-C---------------
Confidence 57999999999999 99999999999999999999999999999999999999994 6
Q ss_pred ccccCcccccccCHHHHhccCccccCC-CccccccCCcCCCCC---ccccCHHHHHHHHHhcCCCceEEEEecchhHHHh
Q 004721 480 IMAGSGIFSFSLIWDEIQTLIPQISNP-YFKFKLFRNPKNKNA---GKFMKLSDFLEMAKNANSLSGVLISIENAVYLAE 555 (733)
Q Consensus 480 ~~~~~g~~i~d~T~~EL~~L~~~~~~~-~~~~~~~~~~~~~g~---~~IptLeEvL~~~~~~~~~~~l~iEiK~~~~~~~ 555 (733)
++| .|.++|++||++++...... +.. ......+.|. ++||||+|+|+.++.. ++++||||.+.....
T Consensus 66 ---~~~-~v~~lt~~eL~~ld~~~~~~~~~~--~~~~~~~~g~~~~~~iptL~evl~~~~~~---~~l~IEiK~~~~~~~ 136 (286)
T cd08606 66 ---TDV-PIHDLTLEQFLHLSRMKYTVDFKK--KGFKGNSRGHSIQAPFTTLEELLKKLPKS---VGFNIELKYPMLHEA 136 (286)
T ss_pred ---CCC-ccccCCHHHHHhhhcccccccccc--cCCCCcccccccccCCCcHHHHHHhCCCc---cceEEEEecCCcchh
Confidence 556 79999999999997532111 100 0011112221 4689999999999764 489999997542110
Q ss_pred hc---------CCcHHHHHHHHHHHcCCCCCCCceEEEEeCCHHHHHHHHhc-cCceEEEEeecccch---hhhHHHHHH
Q 004721 556 KQ---------GMSVTNSVMEALGNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRD---ALNQTIEDI 622 (733)
Q Consensus 556 ~~---------~~~~~~~v~~~l~~~~~~~~~~~~vii~Sfd~~~L~~lk~~-p~~~~~~l~~~~~~~---~~~~~l~~i 622 (733)
.. ...+++.++++++++++. ++|+|+||++++|+.++.+ |++++++++...... .....+...
T Consensus 137 ~~~~~~~~~~~~~~~~~~v~~~i~~~~~~----~~vi~sSF~~~~l~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~ 212 (286)
T cd08606 137 EEEEVAPVAIELNAFVDTVLEKVFDYGAG----RNIIFSSFTPDICILLSLKQPGYPVLFLTEAGKAPDMDVRAASLQEA 212 (286)
T ss_pred hhcccccchhHHHHHHHHHHHHHHhcCCC----CceEEEcCCHHHHHHHHhhCcCCCEEEEeCCCCCccCCchhhcHHHH
Confidence 00 014667899999999987 7999999999999999999 999999997542211 111112222
Q ss_pred HHHHhHhcCCCcccccCCccccccchHHHHHHHHCCCcEEEEec--CCcccccccccCCChHHHHHHHHhhcCcCEEEeC
Q 004721 623 KKFADSVVLSKESVYPLNSAFITSATDIVQRLQSFKLPVYVETF--SNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITE 700 (733)
Q Consensus 623 ~~~a~~i~~~~~~i~~~~~~~l~~~~~~v~~~~~~Gl~v~~wTv--n~~~~~~~~~~~~d~~~e~~~~l~~~GVdgIiTD 700 (733)
..++...+. ..+.+.. .++..++++|+.+|++|+.|++||+ |++. ++.+++ ++||||||||
T Consensus 213 ~~~~~~~~~--~~~~~~~-~~~~~~~~~v~~~~~~Gl~v~~WTv~~n~~~-------------~~~~l~-~~GVdgIiTD 275 (286)
T cd08606 213 IRFAKQWNL--LGLVSAA-EPLVMCPRLIQVVKRSGLVCVSYGVLNNDPE-------------NAKTQV-KAGVDAVIVD 275 (286)
T ss_pred HHHHHHCCC--eEEEech-HHhhhChHHHHHHHHCCcEEEEECCccCCHH-------------HHHHHH-HcCCCEEEEC
Confidence 233333332 1121111 2234478999999999999999999 7775 788886 9999999999
Q ss_pred ChHHHHHHHH
Q 004721 701 FPMTAARYRS 710 (733)
Q Consensus 701 ~P~~~~~~l~ 710 (733)
+|+.+++.+.
T Consensus 276 ~p~~~~~~~~ 285 (286)
T cd08606 276 SVLAIRRGLT 285 (286)
T ss_pred CHHHHHHHhc
Confidence 9999998764
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Saccharomyces cerevisiae YPL110cp and other uncharacterized fungal homologs. The product of S. cerevisiae ORF YPL110c (GDE1), YPL110cp (Gde1p), displays homology to bacterial and mammalian glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. S. cerevisiae YPL110cp has been characterized as a cytoplasmic glycerophosphocholine (GPC)-specific phosphodiesterase that selectively hydrolyzes GPC, not glycerophosphoinositol (GPI), to generate choline and glycerolphosphate. YPL110cp has multi-domain architecture, including not only C-terminal GDPD, but also an SPX N-terminal domain along with several ankyrin repeats, which imp |
| >cd08582 GDPD_like_2 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-42 Score=354.95 Aligned_cols=227 Identities=18% Similarity=0.180 Sum_probs=182.3
Q ss_pred EEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCCccccCccccccccccccccCCCCCCccc
Q 004721 94 VVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPGWF 173 (733)
Q Consensus 94 viaHRG~~~~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l~rtt~~~~~~~~~~~~~~~~g~~~~g~~ 173 (733)
||||||+++.+||||++||+.|++.|+| +||+|||+||||++||+||.+|+|+|++++ .
T Consensus 1 iiaHRG~~~~~pENTl~af~~A~~~G~~--~vE~Dv~lTkDg~~Vv~HD~~l~r~t~~~~-------------------~ 59 (233)
T cd08582 1 VIAHRGASAEAPENTLAAFELAWEQGAD--GIETDVRLTKDGELVCVHDPTLKRTSGGDG-------------------A 59 (233)
T ss_pred CEeCCCCCCCCCchHHHHHHHHHHcCCC--EEEEEEEEccCCCEEEecCCccccccCCCc-------------------c
Confidence 6899999999999999999999999999 999999999999999999999999999876 7
Q ss_pred cccCCHHhhccccccccccCCCCCCCCCCcccccHHHHHHhhCC--CceEeeccCchhhhhcCCcHHHHHHHHHhhcC-C
Q 004721 174 SIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKP--PGLWLNIQHDAFYAQHNLSMRSFVLSVSRSVV-V 250 (733)
Q Consensus 174 v~d~T~~eL~~l~~~~~~~~~~~~~~g~~~~iptL~e~l~~~~~--~~l~iEiK~~~~~~~~~~~~~~~v~~~l~~~~-~ 250 (733)
|.++||+||++++++.++. ..|.+ ++||||+|+|+++++ ..++||+|.+. ....+++.+++++++++ .
T Consensus 60 i~~~t~~el~~l~~~~~~~---~~~~~--~~iptL~evl~~~~~~~~~l~ieiK~~~----~~~~~~~~~~~~~~~~~~~ 130 (233)
T cd08582 60 VSDLTLAELRKLDIGSWKG---ESYKG--EKVPTLEEYLAIVPKYGKKLFIEIKHPR----RGPEAEEELLKLLKESGLL 130 (233)
T ss_pred hhhCCHHHHhcCCCCcccC---CCCCC--CcCCCHHHHHHHHHhcCceEEEEeCCCc----cCccHHHHHHHHHHHcCCC
Confidence 9999999999999987642 44555 899999999999865 78999999751 12357889999999984 2
Q ss_pred ---ceeccCCHHHHHHHHHhcCCCcccchhhhcCCCccCCCCCcchhHHHhhHHHHHhhcccccCCccccccCCCccCCC
Q 004721 251 ---NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTFASGILVPKDYIWPVDESLYLL 327 (733)
Q Consensus 251 ---~~i~SF~~~~l~~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~i~~~~~~i~~~~~~~~~~ 327 (733)
++++||++..+++++++.| +.+++++...... . ..... ......+.++.+++.. .
T Consensus 131 ~~~v~~~Sf~~~~l~~~~~~~p--~~~~~~l~~~~~~--~----~~~~~----~~~~~~~~~i~~~~~~----------~ 188 (233)
T cd08582 131 PEQIVIISFDAEALKRVRELAP--TLETLWLRNYKSP--K----EDPRP----LAKSGGAAGLDLSYEK----------K 188 (233)
T ss_pred CCCEEEEecCHHHHHHHHHHCC--CCcEEEEeccCcc--c----cchhH----HHHhhCceEEcccccc----------c
Confidence 4999999999999999998 6777763221110 0 00000 0011134555554332 1
Q ss_pred CChHHHHHHHHcCCeEEEeecCCCCCcccCCCCChHHHHHHHHhcCCcccceEEecCCCC
Q 004721 328 PHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLT 387 (733)
Q Consensus 328 ~~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~~~~~l~~~G~~~VDgIiTD~P~~ 387 (733)
.++++|+.+|++|++|++||||++ ++|++++++| ||||+||+|+.
T Consensus 189 ~~~~~v~~~~~~G~~v~~wTvn~~------------~~~~~l~~~G---Vdgi~TD~p~~ 233 (233)
T cd08582 189 LNPAFIKALRDAGLKLNVWTVDDA------------EDAKRLIELG---VDSITTNRPGR 233 (233)
T ss_pred CCHHHHHHHHHCCCEEEEEeCCCH------------HHHHHHHHCC---CCEEEcCCCCC
Confidence 257899999999999999999874 8999999999 99999999973
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity to Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. |
| >cd08564 GDPD_GsGDE_like Glycerophosphodiester phosphodiesterase domain of putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-42 Score=363.01 Aligned_cols=241 Identities=17% Similarity=0.171 Sum_probs=185.5
Q ss_pred CCCEEEEeCCCCCC--CCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCCcc--------ccCccccccccc
Q 004721 90 DPPFVVARGGFSGI--FPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDN--------ASNIAQIFKTQQ 159 (733)
Q Consensus 90 ~~~~viaHRG~~~~--~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l~r--------tt~~~~~~~~~~ 159 (733)
.+|+||||||+++. +||||++||+.|++.|+| +||+|||+||||++||+||.++++ ++++.+
T Consensus 2 ~~~~iiaHRG~~~~~~~pENTl~Af~~A~~~Gad--~iE~DV~lTkDg~lVv~HD~~~~~~~~~~~~~~~~~~~------ 73 (265)
T cd08564 2 VRPIIVGHRGAGCSTLYPENTLPSFRRALEIGVD--GVELDVFLTKDNEIVVFHGTEDDTNPDTSIQLDDSGFK------ 73 (265)
T ss_pred CCceEEEeCCCCCCCCCCchhHHHHHHHHHcCCC--EEEEeeEECCCCCEEEEcCCccccCccccccccCCCcc------
Confidence 36899999999988 999999999999999999 999999999999999999987665 444443
Q ss_pred cccccCCCCCCccccccCCHHhhccccccccccCCCC---CCCCCCcccccHHHHHHhhCC-CceEeeccCchhhhhcCC
Q 004721 160 KNYLVNGVPTPGWFSIDYTLNDLSNIILNQGVYSRTD---KFDGNGFQILTVQDMARQIKP-PGLWLNIQHDAFYAQHNL 235 (733)
Q Consensus 160 ~~~~~~g~~~~g~~v~d~T~~eL~~l~~~~~~~~~~~---~~~g~~~~iptL~e~l~~~~~-~~l~iEiK~~~~~~~~~~ 235 (733)
.|.++|++||++++++.|+...+. .+. +++||||+|+|+++++ +.++||||.+. .
T Consensus 74 -------------~v~~~t~~el~~l~~~~~~~~~~~~~~~~~--~~~iptL~evl~~~~~~~~l~iEiK~~~------~ 132 (265)
T cd08564 74 -------------NINDLSLDEITRLHFKQLFDEKPCGADEIK--GEKIPTLEDVLVTFKDKLKYNIELKGRE------V 132 (265)
T ss_pred -------------chhhCcHHHHhhcccCcccccCcccccccC--CccCCCHHHHHHHhccCcEEEEEeCCCc------h
Confidence 799999999999999988753211 233 4899999999999965 78999999653 1
Q ss_pred cHHHHHHHHHhhcCC---ceeccCCH-HHHHHHHHhcCCCc---ccchhhhcCCCccCCCCCcchhHHHhhHHHHH-hhc
Q 004721 236 SMRSFVLSVSRSVVV---NYISSPEV-NFLRSIAARFRPSM---TKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIK-TFA 307 (733)
Q Consensus 236 ~~~~~v~~~l~~~~~---~~i~SF~~-~~l~~l~~~~p~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~-~~a 307 (733)
.+++.+++++++++. ++|+||++ +++++++++.| + +++++ +...... ..+... +.... ..+
T Consensus 133 ~~~~~v~~~l~~~~~~~~v~i~SF~~~~~l~~~~~~~~--~~~~~~~~~-l~~~~~~-----~~~~~~---~~~~~~~~~ 201 (265)
T cd08564 133 GLGERVLNLVEKYGMILQVHFSSFLHYDRLDLLKALRP--NKLNVPIAL-LFNEVKS-----PSPLDF---LEQAKYYNA 201 (265)
T ss_pred hHHHHHHHHHHHcCCCCCEEEEecCchhHHHHHHHhCc--CCCCceEEE-EecCCCC-----cccccH---HHHHHhcCC
Confidence 477899999999986 59999999 99999999998 5 66765 3321110 000111 11111 124
Q ss_pred ccccCCccccccCCCccCCCCChHHHHHHHHcCCeEEEeecCCCCCcccCCCCChHHHHHHHHhcCCcccceEEecCCCC
Q 004721 308 SGILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLT 387 (733)
Q Consensus 308 ~~i~~~~~~i~~~~~~~~~~~~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~~~~~l~~~G~~~VDgIiTD~P~~ 387 (733)
.++++.+..+ ++++|+.+|++|++|++||.++- +|+.++|++++++| |||||||+|++
T Consensus 202 ~~v~~~~~~~-----------~~~~v~~~~~~Gl~v~~wT~~~~--------~n~~~~~~~l~~~G---vdgiiTD~p~~ 259 (265)
T cd08564 202 TWVNFSYDFW-----------TEEFVKKAHENGLKVMTYFDEPV--------NDNEEDYKVYLELG---VDCICPNDPVL 259 (265)
T ss_pred ceeeechhhh-----------hHHHHHHHHHcCCEEEEecCCCC--------CCCHHHHHHHHHcC---CCEEEcCCHHH
Confidence 4455443322 47899999999999999993211 13358999999999 99999999998
Q ss_pred ccccc
Q 004721 388 PSAAV 392 (733)
Q Consensus 388 ~~~~l 392 (733)
+++++
T Consensus 260 ~~~~~ 264 (265)
T cd08564 260 LVNFL 264 (265)
T ss_pred HHHhh
Confidence 87765
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase (GsGDE, EC 3.1.4.46) and its uncharacterized eukaryotic homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. |
| >cd08573 GDPD_GDE1 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE1 and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-42 Score=357.37 Aligned_cols=232 Identities=16% Similarity=0.207 Sum_probs=184.4
Q ss_pred EEecCCCCCCCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeeccccccccccCCCcCCCcccccccccccCccccc
Q 004721 410 VISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIFSF 489 (733)
Q Consensus 410 iIaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L~rtt~v~~~~~~~r~~~~~~~~~~~g~~i~ 489 (733)
||||||+++.+||||++||++|++.|+|+||+|||+||||++||+||.+|+|+|| ++| .|.
T Consensus 1 iiaHRG~~~~~pENTl~af~~A~~~Gad~iE~DV~lTkDg~~Vv~HD~~l~R~t~------------------~~g-~v~ 61 (258)
T cd08573 1 IIGHRGAGHDAPENTLAAFRQAKKNGADGVEFDLEFTKDGVPVLMHDDTVDRTTD------------------GTG-LVA 61 (258)
T ss_pred CEecCCCCCCCCccHHHHHHHHHHcCCCEEEEEeeECCCCcEEEECCCCcceecC------------------CCc-eEe
Confidence 6899999999999999999999999999999999999999999999999999999 667 799
Q ss_pred ccCHHHHhccCccccCCCccccccCCcCCCCCccccCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCCcHHHHHHHHH
Q 004721 490 SLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEAL 569 (733)
Q Consensus 490 d~T~~EL~~L~~~~~~~~~~~~~~~~~~~~g~~~IptLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~v~~~l 569 (733)
++||+||++++++.+.++ ...|. +++||||+|+|+++++. + ..++||||.+.. .+++.+++++
T Consensus 62 ~~t~~el~~l~~~~~~~~-------~~~~~-~~~iptL~evl~~~~~~-~-~~l~iEiK~~~~-------~~~~~v~~~l 124 (258)
T cd08573 62 ELTWEELRKLNAAAKHRL-------SSRFP-GEKIPTLEEAVKECLEN-N-LRMIFDVKSNSS-------KLVDALKNLF 124 (258)
T ss_pred cCcHHHHhhCCCCCCCCC-------ccccC-CCCCCCHHHHHHHHHhc-C-CEEEEEeCCCcH-------HHHHHHHHHH
Confidence 999999999998865431 12345 38999999999999865 3 379999997542 4678899999
Q ss_pred HHcC-CCCCCCceEEEEeCCHHHHHHHHhc-cCceEEEEeecccchhh-----h-----------HHHHHHHHH------
Q 004721 570 GNAG-YNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDAL-----N-----------QTIEDIKKF------ 625 (733)
Q Consensus 570 ~~~~-~~~~~~~~vii~Sfd~~~L~~lk~~-p~~~~~~l~~~~~~~~~-----~-----------~~l~~i~~~------ 625 (733)
++++ +. ++++++||++..|+++++. |++++++++........ . ..+..+..+
T Consensus 125 ~~~~~~~----~~v~v~SF~~~~l~~~~~~~p~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (258)
T cd08573 125 KKYPGLY----DKAIVCSFNPIVIYKVRKADPKILTGLTWRPWFLSYTDDEGGPRRKSGWKHFLYSMLDVILEWSLHSWL 200 (258)
T ss_pred HHCCCcc----CCEEEEECCHHHHHHHHHhCCCceEEEecCcchhcccccccCcccchHHHHHHHHHHHHHHHHHHHhhh
Confidence 9998 77 7999999999999999999 99999998753210000 0 000000000
Q ss_pred HhHhcCCCcccccCCccccccchHHHHHHHHCCCcEEEEecCCcccccccccCCChHHHHHHHHhh-cCcCEEEeCC
Q 004721 626 ADSVVLSKESVYPLNSAFITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEG-AGIDGVITEF 701 (733)
Q Consensus 626 a~~i~~~~~~i~~~~~~~l~~~~~~v~~~~~~Gl~v~~wTvn~~~~~~~~~~~~d~~~e~~~~l~~-~GVdgIiTD~ 701 (733)
+..+++ ..+.+. +...++++|+.+|++|++|++||||++. ++.+++ + +||| ||||+
T Consensus 201 ~~~~~~--~~v~~~---~~~~~~~~v~~~~~~G~~v~vWTVn~~~-------------~~~~l~-~~~GVd-iiTD~ 257 (258)
T cd08573 201 PYFLGV--SALLIH---KDDISSAYVRYWRARGIRVIAWTVNTPT-------------EKQYFA-KTLNVP-YITDS 257 (258)
T ss_pred hhhcCe--eEEEec---hHhcCHHHHHHHHHCCCEEEEEecCCHH-------------HHHHHH-HHhCCC-eecCC
Confidence 011121 222222 2234789999999999999999999997 899897 8 9999 99997
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE1 (also known as MIR16, membrane interacting protein of RGS16) and their metazoan homologs. GDE1 is widely expressed in mammalian tissues, including the heart, brain, liver, and kidney. It shows sequence homology to bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. GDE1 has been characterized as GPI-GDE (EC 3.1.4.44) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate glycerol phosphate and inositol. It functions as an integral membrane-bound glycoprotein interacting with regulator of G protein signaling protein RGS16, and is modulated by G |
| >cd08573 GDPD_GDE1 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE1 and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-42 Score=357.32 Aligned_cols=231 Identities=14% Similarity=0.126 Sum_probs=178.9
Q ss_pred EEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCCccccCccccccccccccccCCCCCCccc
Q 004721 94 VVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPGWF 173 (733)
Q Consensus 94 viaHRG~~~~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l~rtt~~~~~~~~~~~~~~~~g~~~~g~~ 173 (733)
||||||+++.+||||++||+.|++.|+| +||+|||+||||++||+||.+|+|+|++.+ .
T Consensus 1 iiaHRG~~~~~pENTl~af~~A~~~Gad--~iE~DV~lTkDg~~Vv~HD~~l~R~t~~~g-------------------~ 59 (258)
T cd08573 1 IIGHRGAGHDAPENTLAAFRQAKKNGAD--GVEFDLEFTKDGVPVLMHDDTVDRTTDGTG-------------------L 59 (258)
T ss_pred CEecCCCCCCCCccHHHHHHHHHHcCCC--EEEEEeeECCCCcEEEECCCCcceecCCCc-------------------e
Confidence 6899999999999999999999999999 999999999999999999999999999876 7
Q ss_pred cccCCHHhhccccccccccCCCCCCCCCCcccccHHHHHHhhC--CCceEeeccCchhhhhcCCcHHHHHHHHHhhcC-C
Q 004721 174 SIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIK--PPGLWLNIQHDAFYAQHNLSMRSFVLSVSRSVV-V 250 (733)
Q Consensus 174 v~d~T~~eL~~l~~~~~~~~~~~~~~g~~~~iptL~e~l~~~~--~~~l~iEiK~~~~~~~~~~~~~~~v~~~l~~~~-~ 250 (733)
|+++||+||++|+++.+++ ....|.+ ++||||+|+|++++ +..++||+|.+.. .+++.+++++++++ .
T Consensus 60 v~~~t~~el~~l~~~~~~~-~~~~~~~--~~iptL~evl~~~~~~~~~l~iEiK~~~~------~~~~~v~~~l~~~~~~ 130 (258)
T cd08573 60 VAELTWEELRKLNAAAKHR-LSSRFPG--EKIPTLEEAVKECLENNLRMIFDVKSNSS------KLVDALKNLFKKYPGL 130 (258)
T ss_pred EecCcHHHHhhCCCCCCCC-CccccCC--CCCCCHHHHHHHHHhcCCEEEEEeCCCcH------HHHHHHHHHHHHCCCc
Confidence 9999999999999998753 2344666 89999999999985 4679999996532 47788999999988 4
Q ss_pred ---ceeccCCHHHHHHHHHhcCCCcccchhhhcCCCccCCC----CCcc---hhHHH-hhHHHH-----------Hhhcc
Q 004721 251 ---NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPT----TNQT---YGSLL-KNLTFI-----------KTFAS 308 (733)
Q Consensus 251 ---~~i~SF~~~~l~~l~~~~p~~~~~~~~~l~~~~~~~~~----~~~~---~~~~~-~~l~~~-----------~~~a~ 308 (733)
++++||++..++++++..| ++++++ +......... .... +.... ..+..+ ...++
T Consensus 131 ~~~v~v~SF~~~~l~~~~~~~p--~~~~g~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (258)
T cd08573 131 YDKAIVCSFNPIVIYKVRKADP--KILTGL-TWRPWFLSYTDDEGGPRRKSGWKHFLYSMLDVILEWSLHSWLPYFLGVS 207 (258)
T ss_pred cCCEEEEECCHHHHHHHHHhCC--CceEEE-ecCcchhcccccccCcccchHHHHHHHHHHHHHHHHHHHhhhhhhcCee
Confidence 5999999999999999998 677775 3221110000 0010 11000 000000 01123
Q ss_pred cccCCccccccCCCccCCCCChHHHHHHHHcCCeEEEeecCCCCCcccCCCCChHHHHHHHHh-cCCcccceEEecC
Q 004721 309 GILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFID-NGDFSVDGVLSDF 384 (733)
Q Consensus 309 ~i~~~~~~i~~~~~~~~~~~~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~~~~~l~~-~G~~~VDgIiTD~ 384 (733)
.+++.+.. .++++|+.+|++|++|++||||++ ++|+++++ +| || ||||+
T Consensus 208 ~v~~~~~~-----------~~~~~v~~~~~~G~~v~vWTVn~~------------~~~~~l~~~~G---Vd-iiTD~ 257 (258)
T cd08573 208 ALLIHKDD-----------ISSAYVRYWRARGIRVIAWTVNTP------------TEKQYFAKTLN---VP-YITDS 257 (258)
T ss_pred EEEechHh-----------cCHHHHHHHHHCCCEEEEEecCCH------------HHHHHHHHHhC---CC-eecCC
Confidence 33333322 357899999999999999999875 89999999 99 99 99997
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE1 (also known as MIR16, membrane interacting protein of RGS16) and their metazoan homologs. GDE1 is widely expressed in mammalian tissues, including the heart, brain, liver, and kidney. It shows sequence homology to bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. GDE1 has been characterized as GPI-GDE (EC 3.1.4.44) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate glycerol phosphate and inositol. It functions as an integral membrane-bound glycoprotein interacting with regulator of G protein signaling protein RGS16, and is modulated by G |
| >cd08563 GDPD_TtGDE_like Glycerophosphodiester phosphodiesterase domain of Thermoanaerobacter tengcongensis and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-42 Score=350.71 Aligned_cols=224 Identities=21% Similarity=0.269 Sum_probs=181.8
Q ss_pred CEEEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCCccccCccccccccccccccCCCCCCc
Q 004721 92 PFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPG 171 (733)
Q Consensus 92 ~~viaHRG~~~~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l~rtt~~~~~~~~~~~~~~~~g~~~~g 171 (733)
++||||||+++.+||||++||+.|++.|+| +||+|||+||||++||+||.+|+|+|++++
T Consensus 1 ~~iiaHRG~~~~~pENT~~Af~~A~~~g~~--~vE~DV~~TkDg~~Vv~HD~~l~r~t~~~~------------------ 60 (230)
T cd08563 1 TLIFAHRGYSGTAPENTLLAFKKAIEAGAD--GIELDVHLTKDGQLVVIHDETVDRTTNGKG------------------ 60 (230)
T ss_pred CeEEEccCCCCCCCchhHHHHHHHHHcCCC--EEEEEeeEcCCCCEEEECCCCcccccCCCC------------------
Confidence 369999999999999999999999999999 999999999999999999999999999875
Q ss_pred cccccCCHHhhccccccccccCCCCCCCCCCcccccHHHHHHhhC--CCceEeeccCchhhhhcCCcHHHHHHHHHhhcC
Q 004721 172 WFSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIK--PPGLWLNIQHDAFYAQHNLSMRSFVLSVSRSVV 249 (733)
Q Consensus 172 ~~v~d~T~~eL~~l~~~~~~~~~~~~~~g~~~~iptL~e~l~~~~--~~~l~iEiK~~~~~~~~~~~~~~~v~~~l~~~~ 249 (733)
.+.++||+||++++++.++. ..+.+ ++||||+|+|++++ +..++||+|.+.... ..+++.+++++++++
T Consensus 61 -~i~~~t~~el~~l~~~~~~~---~~~~~--~~iptL~evl~~~~~~~~~l~leiK~~~~~~---~~~~~~l~~~l~~~~ 131 (230)
T cd08563 61 -YVKDLTLEELKKLDAGSWFD---EKFTG--EKIPTLEEVLDLLKDKDLLLNIEIKTDVIHY---PGIEKKVLELVKEYN 131 (230)
T ss_pred -chhhCCHHHHHhcCCCCccC---ccCCC--CcCCCHHHHHHHHHhcCcEEEEEECCCCCcC---hhHHHHHHHHHHHcC
Confidence 79999999999999987643 23433 79999999999997 478999999654321 247889999999997
Q ss_pred C---ceeccCCHHHHHHHHHhcCCCcccchhhhcCCCccCCCCCcchhHHHhhHHHHHh-hcccccCCccccccCCCccC
Q 004721 250 V---NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKT-FASGILVPKDYIWPVDESLY 325 (733)
Q Consensus 250 ~---~~i~SF~~~~l~~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~-~a~~i~~~~~~i~~~~~~~~ 325 (733)
+ ++++||+++.++++++..| ..++++ +..... . .. ...+.. .+.++++.+..
T Consensus 132 ~~~~v~~~Sf~~~~l~~~~~~~p--~~~~~~-l~~~~~-~-----~~------~~~~~~~~~~~v~~~~~~--------- 187 (230)
T cd08563 132 LEDRVIFSSFNHESLKRLKKLDP--KIKLAL-LYETGL-Q-----DP------KDYAKKIGADSLHPDFKL--------- 187 (230)
T ss_pred CCCCEEEEcCCHHHHHHHHHHCC--CCcEEE-EecCcc-c-----CH------HHHHHHhCCEEEccCchh---------
Confidence 5 4999999999999999998 667775 332111 0 00 011111 13445554332
Q ss_pred CCCChHHHHHHHHcCCeEEEeecCCCCCcccCCCCChHHHHHHHHhcCCcccceEEecCC
Q 004721 326 LLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFP 385 (733)
Q Consensus 326 ~~~~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~~~~~l~~~G~~~VDgIiTD~P 385 (733)
.++++++.+|++|++|++||||++ +++++++++| ||||+||+|
T Consensus 188 --~~~~~i~~~~~~g~~v~~Wtvn~~------------~~~~~~~~~G---Vdgi~TD~P 230 (230)
T cd08563 188 --LTEEVVEELKKRGIPVRLWTVNEE------------EDMKRLKDLG---VDGIITNYP 230 (230)
T ss_pred --cCHHHHHHHHHCCCEEEEEecCCH------------HHHHHHHHCC---CCEEeCCCC
Confidence 247899999999999999999864 8999999999 999999998
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermoanaerobacter tengcongensis glycerophosphodiester phosphodiesterase (TtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Despite the fact that most of GDPD family members exist as the monomer, TtGDE can function as a dimeric unit. Its catalytic mechanism is based on the general base-acid catalysis, which is similar to that of phosphoinositide-specific phospholipases C (PI-PLCs, EC 3.1.4.11). A divalent metal cation is required for the enzyme activity of TtGDE. |
| >cd08579 GDPD_memb_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-42 Score=350.64 Aligned_cols=215 Identities=17% Similarity=0.234 Sum_probs=176.5
Q ss_pred EEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCCccccCccccccccccccccCCCCCCccc
Q 004721 94 VVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPGWF 173 (733)
Q Consensus 94 viaHRG~~~~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l~rtt~~~~~~~~~~~~~~~~g~~~~g~~ 173 (733)
||||||+++.+||||++||+.|++.|+| +||+|||+||||++||+||.+|+|+|++.+ .
T Consensus 1 iiaHRG~~~~~pENT~~af~~A~~~Gad--~vE~DV~~T~Dg~~vv~HD~~l~r~t~~~~-------------------~ 59 (220)
T cd08579 1 IIAHRGVSSNGVENTLEALEAAIKAKPD--YVEIDVQETKDGQFVVMHDANLKRLAGVNK-------------------K 59 (220)
T ss_pred CeeccCCCCCCCccHHHHHHHHHHcCCC--EEEEEeeEcCCCCEEEEcCCchhhccCCCC-------------------C
Confidence 6899999999999999999999999999 999999999999999999999999999876 7
Q ss_pred cccCCHHhhccccccccccCCCCCCCCCCcccccHHHHHHhhCC--CceEeeccCchhhhhcCCcHHHHHHHHHhhcCC-
Q 004721 174 SIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKP--PGLWLNIQHDAFYAQHNLSMRSFVLSVSRSVVV- 250 (733)
Q Consensus 174 v~d~T~~eL~~l~~~~~~~~~~~~~~g~~~~iptL~e~l~~~~~--~~l~iEiK~~~~~~~~~~~~~~~v~~~l~~~~~- 250 (733)
|.++||+||++++++.+ +. +++||||+|+|+++++ ..++||||.+... ...+.+.++++++++++
T Consensus 60 v~~~t~~el~~l~~~~~-------~~--~~~iptL~evl~~~~~~~~~l~iEiK~~~~~---~~~~~~~v~~~l~~~~~~ 127 (220)
T cd08579 60 VWDLTLEELKKLTIGEN-------GH--GAKIPSLDEYLALAKGLKQKLLIELKPHGHD---SPDLVEKFVKLYKQNLIE 127 (220)
T ss_pred hhhCCHHHHhcCcCccC-------CC--CCcCCCHHHHHHHhhccCCeEEEEECCCCCC---CHHHHHHHHHHHHHcCCC
Confidence 99999999999998764 23 3799999999999964 6899999975421 22578889999999876
Q ss_pred --ceeccCCHHHHHHHHHhcCCCcccchhhhcCCCccCCCCCcchhHHHhhHHHHHhhcccccCCccccccCCCccCCCC
Q 004721 251 --NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTFASGILVPKDYIWPVDESLYLLP 328 (733)
Q Consensus 251 --~~i~SF~~~~l~~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~i~~~~~~i~~~~~~~~~~~ 328 (733)
++|+||++..++.+++..| ..+++++ ..... ... . ...++.+++.+.. .
T Consensus 128 ~~v~v~Sf~~~~l~~~~~~~p--~~~~~~~-~~~~~---------~~~----~--~~~~~~~~~~~~~-----------~ 178 (220)
T cd08579 128 NQHQVHSLDYRVIEKVKKLDP--KIKTGYI-LPFNI---------GNL----P--KTNVDFYSIEYST-----------L 178 (220)
T ss_pred cCeEEEeCCHHHHHHHHHHCC--CCeEEEE-Eeccc---------Ccc----c--ccCceEEeeehhh-----------c
Confidence 4899999999999999998 6676652 22110 000 0 0123334443322 2
Q ss_pred ChHHHHHHHHcCCeEEEeecCCCCCcccCCCCChHHHHHHHHhcCCcccceEEecCC
Q 004721 329 HTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFP 385 (733)
Q Consensus 329 ~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~~~~~l~~~G~~~VDgIiTD~P 385 (733)
++++|+.+|++|++|++||||++ +++++++++| ||||+||+|
T Consensus 179 ~~~~v~~~~~~G~~v~~wtvn~~------------~~~~~~~~~G---vd~i~TD~P 220 (220)
T cd08579 179 NKEFIRQAHQNGKKVYVWTVNDP------------DDMQRYLAMG---VDGIITDYP 220 (220)
T ss_pred CHHHHHHHHHCCCEEEEEcCCCH------------HHHHHHHHcC---CCEEeCCCC
Confidence 47899999999999999999875 8899999999 999999998
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial glycerophosphodiester phosphodiesterases. In addition to a C-terminal GDPD domain, most members in this family have an N-terminus that functions as a membrane anchor. |
| >cd08607 GDPD_GDE5 Glycerophosphodiester phosphodiesterase domain of putative mammalian glycerophosphodiester phosphodiesterase GDE5 and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=361.68 Aligned_cols=261 Identities=18% Similarity=0.173 Sum_probs=185.5
Q ss_pred eEEecCCCC-------CCCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeeccccccccccCCCcCCCccccccccc
Q 004721 409 LVISKNGAS-------GDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIM 481 (733)
Q Consensus 409 ~iIaHRG~~-------~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L~rtt~v~~~~~~~r~~~~~~~~ 481 (733)
+.|||||++ +.+||||++||+.|+++|||+||+|||+||||++||+||.+|+|+++.... .++.
T Consensus 1 ~~iaHRG~~~~~~~~~~~~PENTl~af~~A~~~Gad~iE~DV~lTkDg~~VV~HD~~l~r~~~~~~~---------~~~~ 71 (290)
T cd08607 1 LDVGHRGAGNSYTAASAVVRENTIASFLQAAEHGADMVEFDVQLTKDLVPVVYHDFTLRVSLKSKGD---------SDRD 71 (290)
T ss_pred CceecCCCCcCcccccCCCCccHHHHHHHHHHcCCCEEEEEEEEccCCeEEEEcCCeeEeeccCccc---------cCcc
Confidence 369999984 899999999999999999999999999999999999999999999882210 0000
Q ss_pred ccCcccccccCHHHHhccCccccCC-Ccccccc--CCcCCCCCccccCHHHHHHHHHhcCCCceEEEEecchhHHHhh--
Q 004721 482 AGSGIFSFSLIWDEIQTLIPQISNP-YFKFKLF--RNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEK-- 556 (733)
Q Consensus 482 ~~~g~~i~d~T~~EL~~L~~~~~~~-~~~~~~~--~~~~~~g~~~IptLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~-- 556 (733)
.+.+..|.++||+||++++++.+.. +...+.. .+.....+++||||+|+|+++++. ++++||||.+....+.
T Consensus 72 ~~~~~~v~~lt~~eL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~iPtL~evl~~~~~~---~~lnIEiK~~~~~~~~~~ 148 (290)
T cd08607 72 DLLEVPVKDLTYEQLKLLKLFHISALKVKEYKSVEEDEDPPEHQPFPTLSDVLESVPED---VGFNIEIKWPQQQKDGSW 148 (290)
T ss_pred ceEEEecccCCHHHHhhcCcccccccccccccccccccccccccCCCCHHHHHHhCCCc---cceEEEEecCcccccccc
Confidence 1112379999999999999864321 1100000 000111147899999999999764 4899999975421100
Q ss_pred --------cCCcHHHHHHHHHHHcCCCCCCCceEEEEeCCHHHHHHHHhc-cCceEEEEeecccc------hhhhHHHHH
Q 004721 557 --------QGMSVTNSVMEALGNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIR------DALNQTIED 621 (733)
Q Consensus 557 --------~~~~~~~~v~~~l~~~~~~~~~~~~vii~Sfd~~~L~~lk~~-p~~~~~~l~~~~~~------~~~~~~l~~ 621 (733)
....+++.+++.+.++++. ++|+|+||++.+|..++.+ |++++++++..... +.....+..
T Consensus 149 ~~~~~~~~~~~~~~~~v~~~i~~~~~~----~~v~isSF~~~~l~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 224 (290)
T cd08607 149 ESELFTYFDRNLFVDIILKIVLEHAGK----RRIIFSSFDADICTMLRFKQNKYPVLFLTQGKTQRYPEFMDLRTRTFEI 224 (290)
T ss_pred ccccccccchhHHHHHHHHHHHHhCCC----CCEEEEcCCHHHHHHHHHhCcCCCEEEEecCCCCccccccchHHHhHHH
Confidence 0013678899999998877 7999999999999999999 99999999854211 111111122
Q ss_pred HHHHHhHhcCCCcccccCCccccccchHHHHHHHHCCCcEEEEec--CCcccccccccCCChHHHHHHHHhhcCcCEEEe
Q 004721 622 IKKFADSVVLSKESVYPLNSAFITSATDIVQRLQSFKLPVYVETF--SNEFVSQAWDFFSDPTVEINTYYEGAGIDGVIT 699 (733)
Q Consensus 622 i~~~a~~i~~~~~~i~~~~~~~l~~~~~~v~~~~~~Gl~v~~wTv--n~~~~~~~~~~~~d~~~e~~~~l~~~GVdgIiT 699 (733)
...++...+.....+.+ .++..++++++.+|++|+.|++||+ |+++ ++.+++ ++|||||||
T Consensus 225 ~~~~~~~~~~~~~~~~~---~~~~~~~~~v~~~~~~Gl~v~~wTv~~n~~~-------------~~~~l~-~~GVdgIiT 287 (290)
T cd08607 225 AVNFAQAEELLGVNLHS---EDLLKDPSQIELAKSLGLVVFCWGDDLNDPE-------------NRKKLK-ELGVDGLIY 287 (290)
T ss_pred HHHHHHHcCCceeEech---hhhhcChHHHHHHHHcCCEEEEECCCCCCHH-------------HHHHHH-HcCCCEEEe
Confidence 22333333221111111 2334578999999999999999999 8776 788886 999999999
Q ss_pred CCh
Q 004721 700 EFP 702 (733)
Q Consensus 700 D~P 702 (733)
|++
T Consensus 288 D~~ 290 (290)
T cd08607 288 DRI 290 (290)
T ss_pred cCC
Confidence 985
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative mammalian GDE5 and similar proteins. Mammalian GDE5 is widely expressed in mammalian tissues, with highest expression in the spinal chord. Although its biological function remains unclear, mammalian GDE5 shows higher sequence homology to fungal and plant glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46) than to other bacterial and mammalian GP-GDEs. It may also hydrolyze glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. In addition to C-terminal GDPD domain, all members in this subfamily have a starch binding domain (CBM20) in the N-terminus, which suggests these proteins may play a distinct role in glycerol metabolism. |
| >cd08570 GDPD_YPL206cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL206cp and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=348.57 Aligned_cols=228 Identities=21% Similarity=0.217 Sum_probs=178.5
Q ss_pred EEecCCCCCCCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeeccccccccccCCCcCCCcccccccccccCccccc
Q 004721 410 VISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIFSF 489 (733)
Q Consensus 410 iIaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L~rtt~v~~~~~~~r~~~~~~~~~~~g~~i~ 489 (733)
||||||+++.+||||++||+.|++.|+|+||+|||+||||++||+||.+++|+|| ++|..|.
T Consensus 1 iiAHRG~~~~~pENT~~af~~a~~~g~d~vE~Dv~lTkDg~~vv~HD~~l~R~t~------------------~~~~~v~ 62 (234)
T cd08570 1 VIGHRGYKAKYPENTLLAFEKAVEAGADAIETDVHLTKDGVVVISHDPNLKRCFG------------------KDGLIID 62 (234)
T ss_pred CEeCCCCCCCCCccHHHHHHHHHHhCCCEEEEEeeEccCCcEEEeCCCccceeeC------------------CCCCEec
Confidence 6899999999999999999999999999999999999999999999999999999 6622799
Q ss_pred ccCHHHHhccCccccCCCccccccCCcCCCCCccccCHHHHHHHHHhc--CCCceEEEEecchhHHHhhcCCcHHHHHHH
Q 004721 490 SLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNA--NSLSGVLISIENAVYLAEKQGMSVTNSVME 567 (733)
Q Consensus 490 d~T~~EL~~L~~~~~~~~~~~~~~~~~~~~g~~~IptLeEvL~~~~~~--~~~~~l~iEiK~~~~~~~~~~~~~~~~v~~ 567 (733)
++|++||++++++.. +.++||||+|+|++++++ ++. .++||+|..... ..+.+.+.+
T Consensus 63 ~~t~~eL~~l~~~~~---------------~~~~iptL~evl~~~~~~~~~~~-~l~iEiK~~~~~-----~~~~~~v~~ 121 (234)
T cd08570 63 DSTWDELSHLRTIEE---------------PHQPMPTLKDVLEWLVEHELPDV-KLMLDIKRDNDP-----EILFKLIAE 121 (234)
T ss_pred cCCHHHHhhcccccC---------------CCccCCcHHHHHHHHHhcCCCCe-EEEEEECCCCCH-----HHHHHHHHH
Confidence 999999999987521 136899999999999765 343 899999965321 246677888
Q ss_pred HHHHcCCCCCCCceEEEEeCCHHHHHHHHhc-cCceEEEEeecccchhhhHHHHHHHHH---HhHhcCCCcccccCCccc
Q 004721 568 ALGNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDALNQTIEDIKKF---ADSVVLSKESVYPLNSAF 643 (733)
Q Consensus 568 ~l~~~~~~~~~~~~vii~Sfd~~~L~~lk~~-p~~~~~~l~~~~~~~~~~~~l~~i~~~---a~~i~~~~~~i~~~~~~~ 643 (733)
++++++......++|+++||++..++.+++. |+++++++..... . ...+..+ +.++++....+ +
T Consensus 122 ~i~~~~~~~~~~~~v~i~Sf~~~~l~~l~~~~p~~~~~~l~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~------~ 189 (234)
T cd08570 122 MLAVKPDLDFWRERIILGLWHLDFLKYGKEVLPGFPVFHIGFSLD-Y-----ARHFLNYSEKLVGISMHFVSL------W 189 (234)
T ss_pred HHHhcCCcccccCCEEEEeCCHHHHHHHHHhCCCCCeEEEEcCHH-H-----HHHHhccccccceEEeeeehh------h
Confidence 8888764210116999999999999999999 9999988864311 0 1111111 11122111000 0
Q ss_pred cccchHHHHHHHHCCCcEEEEecCCcccccccccCCChHHHHHHHHhhcCcCEEEeCCh
Q 004721 644 ITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFP 702 (733)
Q Consensus 644 l~~~~~~v~~~~~~Gl~v~~wTvn~~~~~~~~~~~~d~~~e~~~~l~~~GVdgIiTD~P 702 (733)
...++++++.+|++|++|++||+|++. ++.+++ ++|||||+||+|
T Consensus 190 ~~~~~~~v~~~~~~gl~v~~wTvn~~~-------------~~~~l~-~~gvdgiiTD~P 234 (234)
T cd08570 190 GPFGQAFLPELKKNGKKVFVWTVNTEE-------------DMRYAI-RLGVDGVITDDP 234 (234)
T ss_pred cccCHHHHHHHHHCCCEEEEEecCCHH-------------HHHHHH-HCCCCEEEeCCC
Confidence 013689999999999999999999987 899997 999999999998
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Saccharomyces cerevisiae YPL206cp and uncharacterized hypothetical homologs existing in fungi. The product of S. cerevisiae ORF YPL206c (PGC1), YPL206cp (Pgc1p), displays homology to bacterial and mammalian glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. S. cerevisiae YPL206cp is an integral membrane protein with a single GDPD domain following by a short hydrophobic C-terminal tail that may function as a membrane anchor. This protein plays an essential role in the regulation of the cardiolipin (CL) biosynthetic pathway in yeast by removing the excess phosphatidylglycerol (PG) content of membranes via a phospholip |
| >cd08561 GDPD_cytoplasmic_ScUgpQ2_like Glycerophosphodiester phosphodiesterase domain of Streptomyces coelicolor cytoplasmic phosphodiesterases UgpQ2 and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-41 Score=351.25 Aligned_cols=244 Identities=19% Similarity=0.217 Sum_probs=187.4
Q ss_pred EEecCCCCCCCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeeccccccccccCCCcCCCcccccccccccCccccc
Q 004721 410 VISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIFSF 489 (733)
Q Consensus 410 iIaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L~rtt~v~~~~~~~r~~~~~~~~~~~g~~i~ 489 (733)
||||||+++.+||||++||++|++.|+|+||+|||+||||++||+||.+|+|+|| ++| .|.
T Consensus 1 iiaHRG~~~~~pENT~~af~~A~~~g~d~vE~Dv~~TkDg~~Vv~HD~~l~r~t~------------------~~~-~i~ 61 (249)
T cd08561 1 VIAHRGGAGLAPENTLLAFEDAVELGADVLETDVHATKDGVLVVIHDETLDRTTD------------------GTG-PVA 61 (249)
T ss_pred CcccCCCCCCCCccHHHHHHHHHHhCCCEEEEEeeECCCCCEEEECCCccccccC------------------CCC-chh
Confidence 6899999999999999999999999999999999999999999999999999999 556 799
Q ss_pred ccCHHHHhccCccccCCCccccccCCcCCCCCccccCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCCcHHHHHHHHH
Q 004721 490 SLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEAL 569 (733)
Q Consensus 490 d~T~~EL~~L~~~~~~~~~~~~~~~~~~~~g~~~IptLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~v~~~l 569 (733)
++|++||++++.+.+....+ +......+. ++++|||+|+|+++++. .++||+|.+. ..+++++++++
T Consensus 62 ~~t~~el~~l~~~~~~~~~~-~~~~~~~~~-~~~iptL~evl~~~~~~----~~~ieiK~~~-------~~~~~~~~~~l 128 (249)
T cd08561 62 DLTLAELRRLDAGYHFTDDG-GRTYPYRGQ-GIRIPTLEELFEAFPDV----RLNIEIKDDG-------PAAAAALADLI 128 (249)
T ss_pred hCCHHHHhhcCcCccccCcc-ccccccCCC-CccCCCHHHHHHhCcCC----cEEEEECCCc-------hhHHHHHHHHH
Confidence 99999999999875421000 000011223 37999999999998764 7999999753 24778999999
Q ss_pred HHcCCCCCCCceEEEEeCCHHHHHHHHhc-cCceEEEEeecccchhhhHHHHHHHHH--HhHhcCCCcccc-cC-Ccccc
Q 004721 570 GNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDALNQTIEDIKKF--ADSVVLSKESVY-PL-NSAFI 644 (733)
Q Consensus 570 ~~~~~~~~~~~~vii~Sfd~~~L~~lk~~-p~~~~~~l~~~~~~~~~~~~l~~i~~~--a~~i~~~~~~i~-~~-~~~~l 644 (733)
+++++. ++++++||++.+|+.+++. |+++++++..... + +...... ..........+. +. ...+.
T Consensus 129 ~~~~~~----~~~~~~Sf~~~~l~~~~~~~p~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (249)
T cd08561 129 ERYGAQ----DRVLVASFSDRVLRRFRRLCPRVATSAGEGEVA-A-----FVLASRLGLGSLYSPPYDALQIPVRYGGVP 198 (249)
T ss_pred HHcCCC----CcEEEEECCHHHHHHHHHHCCCcceeccHHHHH-H-----HHHHhhcccccccCCCCcEEEcCcccCCee
Confidence 999987 7999999999999999999 9999987753210 0 0000000 000000001111 10 01122
Q ss_pred ccchHHHHHHHHCCCcEEEEecCCcccccccccCCChHHHHHHHHhhcCcCEEEeCChHHHHHHH
Q 004721 645 TSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPMTAARYR 709 (733)
Q Consensus 645 ~~~~~~v~~~~~~Gl~v~~wTvn~~~~~~~~~~~~d~~~e~~~~l~~~GVdgIiTD~P~~~~~~l 709 (733)
..++++++.+|++|+.|++||||+.+ ++.+++ ++|||||+||+|+++.+++
T Consensus 199 ~~~~~~v~~~~~~G~~v~vWTVN~~~-------------~~~~l~-~~gVdgIiTD~p~~~~~~~ 249 (249)
T cd08561 199 LVTPRFVRAAHAAGLEVHVWTVNDPA-------------EMRRLL-DLGVDGIITDRPDLLLEVL 249 (249)
T ss_pred cCCHHHHHHHHHCCCEEEEEecCCHH-------------HHHHHH-hcCCCEEEcCCHHHHHhhC
Confidence 45689999999999999999999987 899887 9999999999999988763
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized cytoplasmic phosphodiesterases which predominantly exist in bacteria. The prototype of this family is a putative cytoplasmic phosphodiesterase encoded by gene ulpQ2 (SCO1419) in the Streptomyces coelicolor genome. It is distantly related to the Escherichia coli cytoplasmic phosphodiesterases UgpQ that catalyzes the hydrolysis of glycerophosphodiesters at the inner side of the cytoplasmic membrane to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. |
| >cd08605 GDPD_GDE5_like_1_plant Glycerophosphodiester phosphodiesterase domain of uncharacterized plant glycerophosphodiester phosphodiesterase-like proteins similar to mammalian GDE5 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-41 Score=357.11 Aligned_cols=253 Identities=17% Similarity=0.166 Sum_probs=184.6
Q ss_pred EEecCCCCC-C----------CCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeeccccccccccCCCcCCCcccccc
Q 004721 410 VISKNGASG-D----------YPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIP 478 (733)
Q Consensus 410 iIaHRG~~~-~----------~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L~rtt~v~~~~~~~r~~~~~ 478 (733)
||||||++. . +||||++||++|++.|||+||+|||+||||+|||+||.+|+|++|...
T Consensus 2 ~ighrg~~~~~~~~~~~~~~~~~ENTl~Af~~A~~~Gad~vE~DV~lTkDg~~VV~HD~~l~r~~~g~~----------- 70 (282)
T cd08605 2 VIGHRGLGMNRASHQPSVGPGIRENTIASFIAASKFGADFVEFDVQVTRDGVPVIWHDDFIVVERGGEV----------- 70 (282)
T ss_pred eEeccCCCcCcccccccccCCCCCcHHHHHHHHHHcCCCEEEEEEEECcCCeEEEECCCceecccCCCc-----------
Confidence 799999765 3 459999999999999999999999999999999999999999988110
Q ss_pred cccccCcccccccCHHHHhccCccccCCCcccc--ccC--Cc---CC--CCCccccCHHHHHHHHHhcCCCceEEEEecc
Q 004721 479 EIMAGSGIFSFSLIWDEIQTLIPQISNPYFKFK--LFR--NP---KN--KNAGKFMKLSDFLEMAKNANSLSGVLISIEN 549 (733)
Q Consensus 479 ~~~~~~g~~i~d~T~~EL~~L~~~~~~~~~~~~--~~~--~~---~~--~g~~~IptLeEvL~~~~~~~~~~~l~iEiK~ 549 (733)
.+| .|.++||+||++|+++.+.++.... .++ .+ .+ ..+++||||+|+|+.++.. ++++||||.
T Consensus 71 ----~~~-~V~dlT~~EL~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iPtL~evl~~~~~~---~~l~IEiK~ 142 (282)
T cd08605 71 ----ESS-RIRDLTLAELKALGPQAESTKTSTVALYRKAKDPEPEPWIMDVEDSIPTLEEVFSEVPPS---LGFNIELKF 142 (282)
T ss_pred ----Ccc-chhhCcHHHHHhccccccccccCcchhhccccccccccccccccCCCCCHHHHHHhCCCC---ccEEEEEec
Confidence 156 7999999999999987543210000 000 00 00 1247999999999999664 479999996
Q ss_pred hhHHHh--hcCCcHHHHHHHHHHHcCCCCCCCceEEEEeCCHHHHHHHHhc-cCceEEEEeeccc---chhhhHHHHHHH
Q 004721 550 AVYLAE--KQGMSVTNSVMEALGNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENI---RDALNQTIEDIK 623 (733)
Q Consensus 550 ~~~~~~--~~~~~~~~~v~~~l~~~~~~~~~~~~vii~Sfd~~~L~~lk~~-p~~~~~~l~~~~~---~~~~~~~l~~i~ 623 (733)
+..... ..-..+.++++++++++++. ++|+|+|||+++|+.++++ |++++++++.... .+.....+....
T Consensus 143 ~~~~~~~~~~~~~~~~~v~~~i~~~~~~----~~viisSF~~~~l~~l~~~~p~~~~~~L~~~~~~~~~~~~~~~~~~~~ 218 (282)
T cd08605 143 GDDNKTEAEELVRELRAILAVCKQHAPG----RRIMFSSFDPDAAVLLRALQSLYPVMFLTDCGPYTHNDPRRNSIEAAI 218 (282)
T ss_pred CccccchHHHHHHHHHHHHHHHHhcCCC----CeEEEEeCCHHHHHHHHhcCccCCEEEEecCCCccccCchhhhHHHHH
Confidence 532100 00012357788999999887 7999999999999999999 9999999986421 111111222233
Q ss_pred HHHhHhcCCCcccccCCccccccchHHHHHHHHCCCcEEEEec--CCcccccccccCCChHHHHHHHHhhcCcCEEEeCC
Q 004721 624 KFADSVVLSKESVYPLNSAFITSATDIVQRLQSFKLPVYVETF--SNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEF 701 (733)
Q Consensus 624 ~~a~~i~~~~~~i~~~~~~~l~~~~~~v~~~~~~Gl~v~~wTv--n~~~~~~~~~~~~d~~~e~~~~l~~~GVdgIiTD~ 701 (733)
.++..+++ ..+++.. ..+..++++++.+|++|+.|++||+ |+++ +|.+++ ++||||||||+
T Consensus 219 ~~~~~~~~--~~~~~~~-~~l~~~~~~v~~~~~~Gl~v~vWTv~~n~~~-------------~~~~l~-~~GVdgIiTD~ 281 (282)
T cd08605 219 QVALEGGL--QGIVSEV-KVLLRNPTAVSLVKASGLELGTYGKLNNDAE-------------AVERQA-DLGVDGVIVDH 281 (282)
T ss_pred HHHHHcCC--ceEEecH-HHhhcCcHHHHHHHHcCcEEEEeCCCCCCHH-------------HHHHHH-HcCCCEEEeCC
Confidence 33333332 2233321 1223478999999999999999999 8876 888887 99999999998
Q ss_pred h
Q 004721 702 P 702 (733)
Q Consensus 702 P 702 (733)
+
T Consensus 282 ~ 282 (282)
T cd08605 282 V 282 (282)
T ss_pred C
Confidence 6
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized plant glycerophosphodiester phosphodiesterase (GP-PDE)-like proteins. Members in this family show very high sequence homology to mammalian glycerophosphodiester phosphodiesterase GDE5 and are distantly related to plant GP-PDEs. |
| >cd08567 GDPD_SpGDE_like Glycerophosphodiester phosphodiesterase domain of putative Silicibacter pomeroyi glycerophosphodiester phosphodiesterase and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-41 Score=354.09 Aligned_cols=251 Identities=20% Similarity=0.219 Sum_probs=187.5
Q ss_pred eEEecCCCCCCCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeeccccccccccCCCcCCCccccccccc---ccCc
Q 004721 409 LVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIM---AGSG 485 (733)
Q Consensus 409 ~iIaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L~rtt~v~~~~~~~r~~~~~~~~---~~~g 485 (733)
.||||||+++.+||||++||+.|+++|||+||+|||+||||++||+||.+|+|+|+... ++. ...|
T Consensus 2 ~iiaHRG~~~~~pENT~~Af~~A~~~Gad~vE~DV~~TkDg~~Vv~HD~~l~r~~~r~~-----------~~~~~~~~~~ 70 (263)
T cd08567 2 DLQGHRGARGLLPENTLPAFAKALDLGVDTLELDLVLTKDGVIVVSHDPKLNPDITRDP-----------DGAWLPYEGP 70 (263)
T ss_pred ceEeccCCCCCCCcchHHHHHHHHHcCCCEEEEEEEEcCCCCEEEeCCCccCcceeecC-----------CCCcccccCc
Confidence 58999999999999999999999999999999999999999999999999998764111 000 0124
Q ss_pred ccccccCHHHHhccCccccCC---CccccccCCcCCCCCccccCHHHHHHHHHhcC--CCceEEEEecchhHHHh--hcC
Q 004721 486 IFSFSLIWDEIQTLIPQISNP---YFKFKLFRNPKNKNAGKFMKLSDFLEMAKNAN--SLSGVLISIENAVYLAE--KQG 558 (733)
Q Consensus 486 ~~i~d~T~~EL~~L~~~~~~~---~~~~~~~~~~~~~g~~~IptLeEvL~~~~~~~--~~~~l~iEiK~~~~~~~--~~~ 558 (733)
.|.++|++||++|+++.+.. ++..+.. ...+. +++||||+|+|+++++.+ + +.++||+|.+..... ...
T Consensus 71 -~v~~~t~~el~~l~~~~~~~~~~~~~~~~~-~~~~~-~~~iptL~evl~~~~~~~~~~-~~l~iEiK~~~~~~~~~~~~ 146 (263)
T cd08567 71 -ALYELTLAEIKQLDVGEKRPGSDYAKLFPE-QIPVP-GTRIPTLEEVFALVEKYGNQK-VRFNIETKSDPDRDILHPPP 146 (263)
T ss_pred -chhcCCHHHHHhcCCCccccCcCcccCCCc-cccCc-cccCCCHHHHHHHHHHhccCC-ceEEEEEcCCCCccccCccH
Confidence 79999999999999876531 0100000 11122 378999999999999742 2 389999996542100 001
Q ss_pred CcHHHHHHHHHHHcCCCCCCCceEEEEeCCHHHHHHHHhc-cCceEEEEeecccchhhhHHHHHHHHHHhHhcCCCcccc
Q 004721 559 MSVTNSVMEALGNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVY 637 (733)
Q Consensus 559 ~~~~~~v~~~l~~~~~~~~~~~~vii~Sfd~~~L~~lk~~-p~~~~~~l~~~~~~~~~~~~l~~i~~~a~~i~~~~~~i~ 637 (733)
..+++.++++++++++. ++|+|+||+++.++.++++ |++++++++..... .. +.. .+...+. ..+.
T Consensus 147 ~~~~~~v~~~l~~~~~~----~~v~~~Sf~~~~l~~~~~~~p~~~~~~l~~~~~~---~~-~~~---~~~~~~~--~~~~ 213 (263)
T cd08567 147 EEFVDAVLAVIRKAGLE----DRVVLQSFDWRTLQEVRRLAPDIPTVALTEETTL---GN-LPR---AAKKLGA--DIWS 213 (263)
T ss_pred HHHHHHHHHHHHHcCCC----CceEEEeCCHHHHHHHHHHCCCccEEEEecCCcc---cC-HHH---HHHHhCC--cEEe
Confidence 35788999999999987 7999999999999999999 99999999854310 00 111 1112222 2222
Q ss_pred cCCccccccchHHHHHHHHCCCcEEEEecCCcccccccccCCChHHHHHHHHhhcCcCEEEeCChHH
Q 004721 638 PLNSAFITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPMT 704 (733)
Q Consensus 638 ~~~~~~l~~~~~~v~~~~~~Gl~v~~wTvn~~~~~~~~~~~~d~~~e~~~~l~~~GVdgIiTD~P~~ 704 (733)
+. +...++++++.+|++|+.|++||+|+.. ++.+++ ++|||||+||+|++
T Consensus 214 ~~---~~~~~~~~i~~~~~~G~~v~vwtvn~~~-------------~~~~~~-~~Gvdgi~TD~P~~ 263 (263)
T cd08567 214 PY---FTLVTKELVDEAHALGLKVVPWTVNDPE-------------DMARLI-DLGVDGIITDYPDL 263 (263)
T ss_pred cc---hhhcCHHHHHHHHHCCCEEEEecCCCHH-------------HHHHHH-HcCCCEEEcCCCCC
Confidence 21 2234689999999999999999999886 788886 99999999999963
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and similar proteins. The prototype of this CD is a putative GP-GDE from Silicibacter pomeroyi (SpGDE). It shows high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. |
| >cd08607 GDPD_GDE5 Glycerophosphodiester phosphodiesterase domain of putative mammalian glycerophosphodiester phosphodiesterase GDE5 and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-41 Score=359.46 Aligned_cols=252 Identities=16% Similarity=0.130 Sum_probs=180.9
Q ss_pred EEEEeCCCC-------CCCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCCccccCccccccccccccccC
Q 004721 93 FVVARGGFS-------GIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVN 165 (733)
Q Consensus 93 ~viaHRG~~-------~~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l~rtt~~~~~~~~~~~~~~~~ 165 (733)
+.|||||++ +.+||||++||+.|+++|+| +||+|||+||||++||+||.+|+|+|++.+..+
T Consensus 1 ~~iaHRG~~~~~~~~~~~~PENTl~af~~A~~~Gad--~iE~DV~lTkDg~~VV~HD~~l~r~~~~~~~~~--------- 69 (290)
T cd08607 1 LDVGHRGAGNSYTAASAVVRENTIASFLQAAEHGAD--MVEFDVQLTKDLVPVVYHDFTLRVSLKSKGDSD--------- 69 (290)
T ss_pred CceecCCCCcCcccccCCCCccHHHHHHHHHHcCCC--EEEEEEEEccCCeEEEEcCCeeEeeccCccccC---------
Confidence 368999994 89999999999999999999 999999999999999999999999998764211
Q ss_pred CCCCCccccccCCHHhhccccccccccCCCCCCCC--------CCcccccHHHHHHhhC-CCceEeeccCchhhhhc---
Q 004721 166 GVPTPGWFSIDYTLNDLSNIILNQGVYSRTDKFDG--------NGFQILTVQDMARQIK-PPGLWLNIQHDAFYAQH--- 233 (733)
Q Consensus 166 g~~~~g~~v~d~T~~eL~~l~~~~~~~~~~~~~~g--------~~~~iptL~e~l~~~~-~~~l~iEiK~~~~~~~~--- 233 (733)
+.+..++.|.++||+||++++++.++.++...|.+ .+++||||+|+|++++ +++++||||.+......
T Consensus 70 ~~~~~~~~v~~lt~~eL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~iPtL~evl~~~~~~~~lnIEiK~~~~~~~~~~~ 149 (290)
T cd08607 70 RDDLLEVPVKDLTYEQLKLLKLFHISALKVKEYKSVEEDEDPPEHQPFPTLSDVLESVPEDVGFNIEIKWPQQQKDGSWE 149 (290)
T ss_pred ccceEEEecccCCHHHHhhcCcccccccccccccccccccccccccCCCCHHHHHHhCCCccceEEEEecCccccccccc
Confidence 11112347999999999999998654444444431 1478999999999986 47899999965321110
Q ss_pred --------CCcHHHHHHHHHhhcCC---ceeccCCHHHHHHHHHhcCCCcccchhhhcCCCccCCCCCcchhHHH-----
Q 004721 234 --------NLSMRSFVLSVSRSVVV---NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLL----- 297 (733)
Q Consensus 234 --------~~~~~~~v~~~l~~~~~---~~i~SF~~~~l~~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~----- 297 (733)
...+++.+++.+++++. ++|+||++++|..++++.| ..+++++....... ...+....
T Consensus 150 ~~~~~~~~~~~~~~~v~~~i~~~~~~~~v~isSF~~~~l~~~~~~~p--~~~~~~l~~~~~~~----~~~~~~~~~~~~~ 223 (290)
T cd08607 150 SELFTYFDRNLFVDIILKIVLEHAGKRRIIFSSFDADICTMLRFKQN--KYPVLFLTQGKTQR----YPEFMDLRTRTFE 223 (290)
T ss_pred cccccccchhHHHHHHHHHHHHhCCCCCEEEEcCCHHHHHHHHHhCc--CCCEEEEecCCCCc----cccccchHHHhHH
Confidence 01256788888888764 5999999999999999998 67777633211100 00011100
Q ss_pred hhHHHHHh-hcccccCCccccccCCCccCCCCChHHHHHHHHcCCeEEEeec--CCCCCcccCCCCChHHHHHHHHhcCC
Q 004721 298 KNLTFIKT-FASGILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNF--ANDIPISFNYSYDPLTEYLSFIDNGD 374 (733)
Q Consensus 298 ~~l~~~~~-~a~~i~~~~~~i~~~~~~~~~~~~~~~v~~ah~~Gl~V~~WTv--n~~~~~~~~~~~d~~~~~~~l~~~G~ 374 (733)
..+..... .+.++.+... +...++++|+.+|++|++|++||| |+ .++|++++++|
T Consensus 224 ~~~~~~~~~~~~~~~~~~~---------~~~~~~~~v~~~~~~Gl~v~~wTv~~n~------------~~~~~~l~~~G- 281 (290)
T cd08607 224 IAVNFAQAEELLGVNLHSE---------DLLKDPSQIELAKSLGLVVFCWGDDLND------------PENRKKLKELG- 281 (290)
T ss_pred HHHHHHHHcCCceeEechh---------hhhcChHHHHHHHHcCCEEEEECCCCCC------------HHHHHHHHHcC-
Confidence 00111111 1222222211 122357899999999999999999 64 38999999999
Q ss_pred cccceEEecCC
Q 004721 375 FSVDGVLSDFP 385 (733)
Q Consensus 375 ~~VDgIiTD~P 385 (733)
|||||||++
T Consensus 282 --VdgIiTD~~ 290 (290)
T cd08607 282 --VDGLIYDRI 290 (290)
T ss_pred --CCEEEecCC
Confidence 999999986
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative mammalian GDE5 and similar proteins. Mammalian GDE5 is widely expressed in mammalian tissues, with highest expression in the spinal chord. Although its biological function remains unclear, mammalian GDE5 shows higher sequence homology to fungal and plant glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46) than to other bacterial and mammalian GP-GDEs. It may also hydrolyze glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. In addition to C-terminal GDPD domain, all members in this subfamily have a starch binding domain (CBM20) in the N-terminus, which suggests these proteins may play a distinct role in glycerol metabolism. |
| >cd08572 GDPD_GDE5_like Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE5-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-41 Score=358.37 Aligned_cols=257 Identities=16% Similarity=0.144 Sum_probs=183.4
Q ss_pred EEEEeCCCC--------CCCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCCccccCcccccccccccccc
Q 004721 93 FVVARGGFS--------GIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLV 164 (733)
Q Consensus 93 ~viaHRG~~--------~~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l~rtt~~~~~~~~~~~~~~~ 164 (733)
+||||||++ +.+||||++||+.|+++|+| +||+|||+||||++||+||.+|+|+|++.+.+
T Consensus 1 ~viaHRG~~~~~~~~~~~~~pENTl~Af~~A~~~Gad--~vE~DV~lTkDG~lVv~HD~~l~r~~~~~~~~--------- 69 (293)
T cd08572 1 LVIGHRGLGKNYASGSLAGIRENTIASFLAAAKHGAD--MVEFDVQLTKDGVPVIYHDFTISVSEKSKTGS--------- 69 (293)
T ss_pred CceEecCCCCCcCcccccCcCcccHHHHHHHHHcCCC--EEEEEEEEccCCeEEEEcCCcceeeccccccc---------
Confidence 489999997 69999999999999999999 99999999999999999999999999876421
Q ss_pred CCCCCCccccccCCHHhhccccccccccCCCCCC-------------CCCCcccccHHHHHHhhCC-CceEeeccCchhh
Q 004721 165 NGVPTPGWFSIDYTLNDLSNIILNQGVYSRTDKF-------------DGNGFQILTVQDMARQIKP-PGLWLNIQHDAFY 230 (733)
Q Consensus 165 ~g~~~~g~~v~d~T~~eL~~l~~~~~~~~~~~~~-------------~g~~~~iptL~e~l~~~~~-~~l~iEiK~~~~~ 230 (733)
++....+++|.++||+||++|+++.++..+++.+ ...+++||||+|+|+++++ ++++||||.+...
T Consensus 70 ~~~~g~~~~v~~lT~~eL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iptL~evL~~~~~~~~l~IEiK~~~~~ 149 (293)
T cd08572 70 DEGELIEVPIHDLTLEQLKELGLQHISALKRKALTRKAKGPKPNPWGMDEHDPFPTLQEVLEQVPKDLGFNIEIKYPQLL 149 (293)
T ss_pred ccCcceeeehhhCcHHHHHhccccccccccccccccccccCCccccchhhccCCCCHHHHHHhCCCccceEEEEecCCcc
Confidence 1111122479999999999999988754322211 0114799999999999964 7899999965432
Q ss_pred hhc---------CCcHHHHHHHHHhhcCC---ceeccCCHHHHHHHHHhcCCCcccchhhhcCCCcc-CCCCCcchhHHH
Q 004721 231 AQH---------NLSMRSFVLSVSRSVVV---NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEI-EPTTNQTYGSLL 297 (733)
Q Consensus 231 ~~~---------~~~~~~~v~~~l~~~~~---~~i~SF~~~~l~~l~~~~p~~~~~~~~~l~~~~~~-~~~~~~~~~~~~ 297 (733)
... ...+++.+++++++++. ++++||++++|+.+++..| ..+++++....... .....+ ...+.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~vl~~i~~~~~~~~vv~~SF~~~~l~~l~~~~p--~~~~~~l~~~~~~~~~~~~~~-~~~~~ 226 (293)
T cd08572 150 EDGEGELTPYFERNAFVDTILAVVFEHAGGRRIIFSSFDPDICIMLRLKQN--KYPVLFLTNGGTNEVEHMDPR-RRSLQ 226 (293)
T ss_pred ccccccccchHHHHHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHhhCc--cCCEEEEecCCCCcccccchh-hhhHH
Confidence 210 12467889999999876 4999999999999999998 67887633221100 000000 00000
Q ss_pred hhHHHHHh-hcccccCCccccccCCCccCCCCChHHHHHHHHcCCeEEEeecCCCCCcccCCCCChHHHHHHHHhcCCcc
Q 004721 298 KNLTFIKT-FASGILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFS 376 (733)
Q Consensus 298 ~~l~~~~~-~a~~i~~~~~~i~~~~~~~~~~~~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~~~~~l~~~G~~~ 376 (733)
..+...+. .+.++.+....+ ..++++|+.+|++|++|++|||+|+ +.++|++++++|
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~---------~~~~~~v~~~~~~Gl~v~~wTv~~n----------~~~~~~~l~~~G--- 284 (293)
T cd08572 227 AAVNFALAEGLLGVVLHAEDL---------LKNPSLISLVKALGLVLFTYGDDNN----------DPENVKKQKELG--- 284 (293)
T ss_pred HHHHHHHHCCCeEEEechHHh---------hcCcHHHHHHHHcCcEEEEECCCCC----------CHHHHHHHHHcC---
Confidence 00111111 122333322221 2247899999999999999999321 248999999999
Q ss_pred cceEEecCC
Q 004721 377 VDGVLSDFP 385 (733)
Q Consensus 377 VDgIiTD~P 385 (733)
|||||||+|
T Consensus 285 VdgIiTD~~ 293 (293)
T cd08572 285 VDGVIYDRV 293 (293)
T ss_pred CCEEEecCC
Confidence 999999997
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian glycerophosphodiester phosphodiesterase GDE5-like proteins. GDE5 is widely expressed in mammalian tissues, with highest expression in spinal chord. Although its biological function remains unclear, mammalian GDE5 shows higher sequence homology to fungal and plant glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46) than to other bacterial and mammalian GP-GDEs. It may also hydrolyze glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. |
| >cd08572 GDPD_GDE5_like Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE5-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-41 Score=358.36 Aligned_cols=260 Identities=17% Similarity=0.220 Sum_probs=191.7
Q ss_pred eEEecCCCC--------CCCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeeccccccccccCCCcCCCcccccccc
Q 004721 409 LVISKNGAS--------GDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEI 480 (733)
Q Consensus 409 ~iIaHRG~~--------~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L~rtt~v~~~~~~~r~~~~~~~ 480 (733)
+||||||++ +.+||||++||+.|+++|+|+||+|||+||||++||+||.+|+|+++..+. .++
T Consensus 1 ~viaHRG~~~~~~~~~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDG~lVv~HD~~l~r~~~~~~~---------~~~ 71 (293)
T cd08572 1 LVIGHRGLGKNYASGSLAGIRENTIASFLAAAKHGADMVEFDVQLTKDGVPVIYHDFTISVSEKSKTG---------SDE 71 (293)
T ss_pred CceEecCCCCCcCcccccCcCcccHHHHHHHHHcCCCEEEEEEEEccCCeEEEEcCCcceeecccccc---------ccc
Confidence 589999997 799999999999999999999999999999999999999999999985431 111
Q ss_pred cccCcccccccCHHHHhccCccccCCCcccc------ccCC---cCCCCCccccCHHHHHHHHHhcCCCceEEEEecchh
Q 004721 481 MAGSGIFSFSLIWDEIQTLIPQISNPYFKFK------LFRN---PKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAV 551 (733)
Q Consensus 481 ~~~~g~~i~d~T~~EL~~L~~~~~~~~~~~~------~~~~---~~~~g~~~IptLeEvL~~~~~~~~~~~l~iEiK~~~ 551 (733)
..|.+..|.++|++||++++++.+.+..... .+.. ..+. +++||||+|+|+.+++. .+++||||.+.
T Consensus 72 ~~g~~~~v~~lT~~eL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~iptL~evL~~~~~~---~~l~IEiK~~~ 147 (293)
T cd08572 72 GELIEVPIHDLTLEQLKELGLQHISALKRKALTRKAKGPKPNPWGMDE-HDPFPTLQEVLEQVPKD---LGFNIEIKYPQ 147 (293)
T ss_pred CcceeeehhhCcHHHHHhccccccccccccccccccccCCccccchhh-ccCCCCHHHHHHhCCCc---cceEEEEecCC
Confidence 1233338999999999999987653211000 0000 1123 37899999999999764 48999999764
Q ss_pred HHHhh--------cCCcHHHHHHHHHHHcCCCCCCCceEEEEeCCHHHHHHHHhc-cCceEEEEeecccc-----hhhhH
Q 004721 552 YLAEK--------QGMSVTNSVMEALGNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIR-----DALNQ 617 (733)
Q Consensus 552 ~~~~~--------~~~~~~~~v~~~l~~~~~~~~~~~~vii~Sfd~~~L~~lk~~-p~~~~~~l~~~~~~-----~~~~~ 617 (733)
..... ....+++.++++++++++. ++|+++||++.+|+.+++. |++++++++..... +....
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~vl~~i~~~~~~----~~vv~~SF~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~ 223 (293)
T cd08572 148 LLEDGEGELTPYFERNAFVDTILAVVFEHAGG----RRIIFSSFDPDICIMLRLKQNKYPVLFLTNGGTNEVEHMDPRRR 223 (293)
T ss_pred ccccccccccchHHHHHHHHHHHHHHHHhCCC----CcEEEECCCHHHHHHHHhhCccCCEEEEecCCCCcccccchhhh
Confidence 32100 0024788999999999988 8999999999999999999 99999999864321 11112
Q ss_pred HHHHHHHHHhHhcCCCcccccCCccccccchHHHHHHHHCCCcEEEEec--CCcccccccccCCChHHHHHHHHhhcCcC
Q 004721 618 TIEDIKKFADSVVLSKESVYPLNSAFITSATDIVQRLQSFKLPVYVETF--SNEFVSQAWDFFSDPTVEINTYYEGAGID 695 (733)
Q Consensus 618 ~l~~i~~~a~~i~~~~~~i~~~~~~~l~~~~~~v~~~~~~Gl~v~~wTv--n~~~~~~~~~~~~d~~~e~~~~l~~~GVd 695 (733)
.+..+..++...+. ..+.+.. .++..++++|+.+|++|+.|++||+ |+++ ++.+++ ++|||
T Consensus 224 ~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~v~~~~~~Gl~v~~wTv~~n~~~-------------~~~~l~-~~GVd 286 (293)
T cd08572 224 SLQAAVNFALAEGL--LGVVLHA-EDLLKNPSLISLVKALGLVLFTYGDDNNDPE-------------NVKKQK-ELGVD 286 (293)
T ss_pred hHHHHHHHHHHCCC--eEEEech-HHhhcCcHHHHHHHHcCcEEEEECCCCCCHH-------------HHHHHH-HcCCC
Confidence 23334444433332 1122111 2233478999999999999999999 6665 788786 99999
Q ss_pred EEEeCCh
Q 004721 696 GVITEFP 702 (733)
Q Consensus 696 gIiTD~P 702 (733)
|||||+|
T Consensus 287 gIiTD~~ 293 (293)
T cd08572 287 GVIYDRV 293 (293)
T ss_pred EEEecCC
Confidence 9999987
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian glycerophosphodiester phosphodiesterase GDE5-like proteins. GDE5 is widely expressed in mammalian tissues, with highest expression in spinal chord. Although its biological function remains unclear, mammalian GDE5 shows higher sequence homology to fungal and plant glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46) than to other bacterial and mammalian GP-GDEs. It may also hydrolyze glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. |
| >cd08570 GDPD_YPL206cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL206cp and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-41 Score=347.82 Aligned_cols=221 Identities=18% Similarity=0.190 Sum_probs=171.1
Q ss_pred EEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCCccccCcc-ccccccccccccCCCCCCcc
Q 004721 94 VVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIA-QIFKTQQKNYLVNGVPTPGW 172 (733)
Q Consensus 94 viaHRG~~~~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l~rtt~~~-~~~~~~~~~~~~~g~~~~g~ 172 (733)
||||||+++.+||||++||+.|++.|+| +||+|||+||||++||+||.+++|+|++. +
T Consensus 1 iiAHRG~~~~~pENT~~af~~a~~~g~d--~vE~Dv~lTkDg~~vv~HD~~l~R~t~~~~~------------------- 59 (234)
T cd08570 1 VIGHRGYKAKYPENTLLAFEKAVEAGAD--AIETDVHLTKDGVVVISHDPNLKRCFGKDGL------------------- 59 (234)
T ss_pred CEeCCCCCCCCCccHHHHHHHHHHhCCC--EEEEEeeEccCCcEEEeCCCccceeeCCCCC-------------------
Confidence 6899999999999999999999999999 99999999999999999999999999987 4
Q ss_pred ccccCCHHhhccccccccccCCCCCCCCCCcccccHHHHHHhhC-----CCceEeeccCchhhhhcCCcHHHHHHHHHhh
Q 004721 173 FSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIK-----PPGLWLNIQHDAFYAQHNLSMRSFVLSVSRS 247 (733)
Q Consensus 173 ~v~d~T~~eL~~l~~~~~~~~~~~~~~g~~~~iptL~e~l~~~~-----~~~l~iEiK~~~~~~~~~~~~~~~v~~~l~~ 247 (733)
.|+++|++||++++++.. + .++||||+|+|++++ +..++||+|..... ..+++.+.+++++
T Consensus 60 ~v~~~t~~eL~~l~~~~~---------~-~~~iptL~evl~~~~~~~~~~~~l~iEiK~~~~~----~~~~~~v~~~i~~ 125 (234)
T cd08570 60 IIDDSTWDELSHLRTIEE---------P-HQPMPTLKDVLEWLVEHELPDVKLMLDIKRDNDP----EILFKLIAEMLAV 125 (234)
T ss_pred EeccCCHHHHhhcccccC---------C-CccCCcHHHHHHHHHhcCCCCeEEEEEECCCCCH----HHHHHHHHHHHHh
Confidence 799999999999988631 2 368999999999984 35799999964321 1466778888887
Q ss_pred cC-------CceeccCCHHHHHHHHHhcCCCcccchhhhcCCCccCCCCCcchhHHHhhHHHHHhhcccccCCccccccC
Q 004721 248 VV-------VNYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTFASGILVPKDYIWPV 320 (733)
Q Consensus 248 ~~-------~~~i~SF~~~~l~~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~i~~~~~~i~~~ 320 (733)
++ .++++||++..++.+++..| +.+++++..... ....+ +.. ...+.++++.+..+..
T Consensus 126 ~~~~~~~~~~v~i~Sf~~~~l~~l~~~~p--~~~~~~l~~~~~--------~~~~~---~~~-~~~~~~~~~~~~~~~~- 190 (234)
T cd08570 126 KPDLDFWRERIILGLWHLDFLKYGKEVLP--GFPVFHIGFSLD--------YARHF---LNY-SEKLVGISMHFVSLWG- 190 (234)
T ss_pred cCCcccccCCEEEEeCCHHHHHHHHHhCC--CCCeEEEEcCHH--------HHHHH---hcc-ccccceEEeeeehhhc-
Confidence 64 24899999999999999998 666665211100 00000 000 0012233332221110
Q ss_pred CCccCCCCChHHHHHHHHcCCeEEEeecCCCCCcccCCCCChHHHHHHHHhcCCcccceEEecCC
Q 004721 321 DESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFP 385 (733)
Q Consensus 321 ~~~~~~~~~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~~~~~l~~~G~~~VDgIiTD~P 385 (733)
. .++++++.+|++|++|++||||++ ++|++++++| |||||||+|
T Consensus 191 -----~-~~~~~v~~~~~~gl~v~~wTvn~~------------~~~~~l~~~g---vdgiiTD~P 234 (234)
T cd08570 191 -----P-FGQAFLPELKKNGKKVFVWTVNTE------------EDMRYAIRLG---VDGVITDDP 234 (234)
T ss_pred -----c-cCHHHHHHHHHCCCEEEEEecCCH------------HHHHHHHHCC---CCEEEeCCC
Confidence 0 257899999999999999999975 7899999999 999999998
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Saccharomyces cerevisiae YPL206cp and uncharacterized hypothetical homologs existing in fungi. The product of S. cerevisiae ORF YPL206c (PGC1), YPL206cp (Pgc1p), displays homology to bacterial and mammalian glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. S. cerevisiae YPL206cp is an integral membrane protein with a single GDPD domain following by a short hydrophobic C-terminal tail that may function as a membrane anchor. This protein plays an essential role in the regulation of the cardiolipin (CL) biosynthetic pathway in yeast by removing the excess phosphatidylglycerol (PG) content of membranes via a phospholip |
| >cd08606 GDPD_YPL110cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL110cp and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-41 Score=357.32 Aligned_cols=252 Identities=15% Similarity=0.169 Sum_probs=180.7
Q ss_pred CEEEEeCCCCCCCC--------ccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCCccccCccccccccccccc
Q 004721 92 PFVVARGGFSGIFP--------DSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYL 163 (733)
Q Consensus 92 ~~viaHRG~~~~~p--------ENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l~rtt~~~~~~~~~~~~~~ 163 (733)
+.||||||+++.+| |||++||+.|+++|+| +||+|||+||||++||+||.+|+|| ++.+
T Consensus 2 ~~iiaHRG~~~~~p~~~~~~~pENTl~af~~A~~~g~d--~vE~DV~lTkDg~~VV~HD~~l~rt-~~~~---------- 68 (286)
T cd08606 2 VQVIGHRGLGKNTAERKSLQLGENTVESFILAASLGAS--YVEVDVQLTKDLVPVIYHDFLVSET-GTDV---------- 68 (286)
T ss_pred ceEEEeCCCCCCcccccccCcCcchHHHHHHHHHcCCC--EEEEEEEEccCCEEEEeCCCeeccC-CCCC----------
Confidence 57999999999999 9999999999999999 9999999999999999999999995 5544
Q ss_pred cCCCCCCccccccCCHHhhcccccccccc-CCCCCCC----CC--CcccccHHHHHHhhCC-CceEeeccCchhhhhcC-
Q 004721 164 VNGVPTPGWFSIDYTLNDLSNIILNQGVY-SRTDKFD----GN--GFQILTVQDMARQIKP-PGLWLNIQHDAFYAQHN- 234 (733)
Q Consensus 164 ~~g~~~~g~~v~d~T~~eL~~l~~~~~~~-~~~~~~~----g~--~~~iptL~e~l~~~~~-~~l~iEiK~~~~~~~~~- 234 (733)
.|.++||+||++++.+.... +.+..|. |. .++||||+|+|+.++. ++++||||.+.......
T Consensus 69 ---------~v~~lt~~eL~~ld~~~~~~~~~~~~~~~~~~g~~~~~~iptL~evl~~~~~~~~l~IEiK~~~~~~~~~~ 139 (286)
T cd08606 69 ---------PIHDLTLEQFLHLSRMKYTVDFKKKGFKGNSRGHSIQAPFTTLEELLKKLPKSVGFNIELKYPMLHEAEEE 139 (286)
T ss_pred ---------ccccCCHHHHHhhhcccccccccccCCCCcccccccccCCCcHHHHHHhCCCccceEEEEecCCcchhhhc
Confidence 69999999999998432110 1222333 31 1469999999999964 78999999754221110
Q ss_pred ---------CcHHHHHHHHHhhcCC---ceeccCCHHHHHHHHHhcCCCcccchhhhcCCCccCCCCCcchhHHHhhHHH
Q 004721 235 ---------LSMRSFVLSVSRSVVV---NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTF 302 (733)
Q Consensus 235 ---------~~~~~~v~~~l~~~~~---~~i~SF~~~~l~~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~ 302 (733)
..+++.+++++++++. ++++||++++|+.++++.| +.+++++ ...... +........+......
T Consensus 140 ~~~~~~~~~~~~~~~v~~~i~~~~~~~~vi~sSF~~~~l~~~~~~~p--~~~~~~l-~~~~~~-~~~~~~~~~~~~~~~~ 215 (286)
T cd08606 140 EVAPVAIELNAFVDTVLEKVFDYGAGRNIIFSSFTPDICILLSLKQP--GYPVLFL-TEAGKA-PDMDVRAASLQEAIRF 215 (286)
T ss_pred ccccchhHHHHHHHHHHHHHHhcCCCCceEEEcCCHHHHHHHHhhCc--CCCEEEE-eCCCCC-ccCCchhhcHHHHHHH
Confidence 1356788999999876 5899999999999999998 6777763 321110 0000000000000011
Q ss_pred HHh-hcccccCCccccccCCCccCCCCChHHHHHHHHcCCeEEEeec--CCCCCcccCCCCChHHHHHHHHhcCCcccce
Q 004721 303 IKT-FASGILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNF--ANDIPISFNYSYDPLTEYLSFIDNGDFSVDG 379 (733)
Q Consensus 303 ~~~-~a~~i~~~~~~i~~~~~~~~~~~~~~~v~~ah~~Gl~V~~WTv--n~~~~~~~~~~~d~~~~~~~l~~~G~~~VDg 379 (733)
... .+.++.+.... ...++.+|+.+|++|++|++||| |+ .++|++++++| |||
T Consensus 216 ~~~~~~~~~~~~~~~---------~~~~~~~v~~~~~~Gl~v~~WTv~~n~------------~~~~~~l~~~G---Vdg 271 (286)
T cd08606 216 AKQWNLLGLVSAAEP---------LVMCPRLIQVVKRSGLVCVSYGVLNND------------PENAKTQVKAG---VDA 271 (286)
T ss_pred HHHCCCeEEEechHH---------hhhChHHHHHHHHCCcEEEEECCccCC------------HHHHHHHHHcC---CCE
Confidence 100 12222222111 12257899999999999999999 54 38899999999 999
Q ss_pred EEecCCCCccccch
Q 004721 380 VLSDFPLTPSAAVD 393 (733)
Q Consensus 380 IiTD~P~~~~~~l~ 393 (733)
||||+|+.+++.++
T Consensus 272 IiTD~p~~~~~~~~ 285 (286)
T cd08606 272 VIVDSVLAIRRGLT 285 (286)
T ss_pred EEECCHHHHHHHhc
Confidence 99999999887653
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Saccharomyces cerevisiae YPL110cp and other uncharacterized fungal homologs. The product of S. cerevisiae ORF YPL110c (GDE1), YPL110cp (Gde1p), displays homology to bacterial and mammalian glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. S. cerevisiae YPL110cp has been characterized as a cytoplasmic glycerophosphocholine (GPC)-specific phosphodiesterase that selectively hydrolyzes GPC, not glycerophosphoinositol (GPI), to generate choline and glycerolphosphate. YPL110cp has multi-domain architecture, including not only C-terminal GDPD, but also an SPX N-terminal domain along with several ankyrin repeats, which imp |
| >cd08561 GDPD_cytoplasmic_ScUgpQ2_like Glycerophosphodiester phosphodiesterase domain of Streptomyces coelicolor cytoplasmic phosphodiesterases UgpQ2 and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-41 Score=350.09 Aligned_cols=240 Identities=20% Similarity=0.214 Sum_probs=182.0
Q ss_pred EEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCCccccCccccccccccccccCCCCCCccc
Q 004721 94 VVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPGWF 173 (733)
Q Consensus 94 viaHRG~~~~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l~rtt~~~~~~~~~~~~~~~~g~~~~g~~ 173 (733)
||||||+++.+||||++||+.|++.|+| +||+|||+||||++||+||.+|+|+|++.+ .
T Consensus 1 iiaHRG~~~~~pENT~~af~~A~~~g~d--~vE~Dv~~TkDg~~Vv~HD~~l~r~t~~~~-------------------~ 59 (249)
T cd08561 1 VIAHRGGAGLAPENTLLAFEDAVELGAD--VLETDVHATKDGVLVVIHDETLDRTTDGTG-------------------P 59 (249)
T ss_pred CcccCCCCCCCCccHHHHHHHHHHhCCC--EEEEEeeECCCCCEEEECCCccccccCCCC-------------------c
Confidence 6899999999999999999999999999 999999999999999999999999999876 7
Q ss_pred cccCCHHhhccccccccccCCCC---CCCCCCcccccHHHHHHhhCCCceEeeccCchhhhhcCCcHHHHHHHHHhhcCC
Q 004721 174 SIDYTLNDLSNIILNQGVYSRTD---KFDGNGFQILTVQDMARQIKPPGLWLNIQHDAFYAQHNLSMRSFVLSVSRSVVV 250 (733)
Q Consensus 174 v~d~T~~eL~~l~~~~~~~~~~~---~~~g~~~~iptL~e~l~~~~~~~l~iEiK~~~~~~~~~~~~~~~v~~~l~~~~~ 250 (733)
+.++||+||++++++.++...+. .+...+++||||+|+|+++++..++||+|.+. ..+++.+++++++++.
T Consensus 60 i~~~t~~el~~l~~~~~~~~~~~~~~~~~~~~~~iptL~evl~~~~~~~~~ieiK~~~------~~~~~~~~~~l~~~~~ 133 (249)
T cd08561 60 VADLTLAELRRLDAGYHFTDDGGRTYPYRGQGIRIPTLEELFEAFPDVRLNIEIKDDG------PAAAAALADLIERYGA 133 (249)
T ss_pred hhhCCHHHHhhcCcCccccCccccccccCCCCccCCCHHHHHHhCcCCcEEEEECCCc------hhHHHHHHHHHHHcCC
Confidence 99999999999999876522111 11222479999999999998889999999653 1478899999999875
Q ss_pred ---ceeccCCHHHHHHHHHhcCCCcccchhhhcCCCccCCCCCcchhHHHh-hHHH-HHhhcccccCCccccccCCCccC
Q 004721 251 ---NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLK-NLTF-IKTFASGILVPKDYIWPVDESLY 325 (733)
Q Consensus 251 ---~~i~SF~~~~l~~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~l~~-~~~~a~~i~~~~~~i~~~~~~~~ 325 (733)
++++||+.+.++++++..| +.++.++..... .+..... ++.. .......+.++... .++
T Consensus 134 ~~~~~~~Sf~~~~l~~~~~~~p--~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~ 197 (249)
T cd08561 134 QDRVLVASFSDRVLRRFRRLCP--RVATSAGEGEVA--------AFVLASRLGLGSLYSPPYDALQIPVRY------GGV 197 (249)
T ss_pred CCcEEEEECCHHHHHHHHHHCC--CcceeccHHHHH--------HHHHHhhcccccccCCCCcEEEcCccc------CCe
Confidence 4999999999999999998 566554110000 0000000 0000 00011111111110 012
Q ss_pred CCCChHHHHHHHHcCCeEEEeecCCCCCcccCCCCChHHHHHHHHhcCCcccceEEecCCCCcccc
Q 004721 326 LLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPSAA 391 (733)
Q Consensus 326 ~~~~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~~~~~l~~~G~~~VDgIiTD~P~~~~~~ 391 (733)
...++++++.+|++|+.|++||||++ ++|++++++| ||||+||+|++++++
T Consensus 198 ~~~~~~~v~~~~~~G~~v~vWTVN~~------------~~~~~l~~~g---VdgIiTD~p~~~~~~ 248 (249)
T cd08561 198 PLVTPRFVRAAHAAGLEVHVWTVNDP------------AEMRRLLDLG---VDGIITDRPDLLLEV 248 (249)
T ss_pred ecCCHHHHHHHHHCCCEEEEEecCCH------------HHHHHHHhcC---CCEEEcCCHHHHHhh
Confidence 23458899999999999999999874 8999999999 999999999987654
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized cytoplasmic phosphodiesterases which predominantly exist in bacteria. The prototype of this family is a putative cytoplasmic phosphodiesterase encoded by gene ulpQ2 (SCO1419) in the Streptomyces coelicolor genome. It is distantly related to the Escherichia coli cytoplasmic phosphodiesterases UgpQ that catalyzes the hydrolysis of glycerophosphodiesters at the inner side of the cytoplasmic membrane to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. |
| >cd08566 GDPD_AtGDE_like Glycerophosphodiester phosphodiesterase domain of Agrobacterium tumefaciens and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-41 Score=344.80 Aligned_cols=236 Identities=23% Similarity=0.235 Sum_probs=181.3
Q ss_pred eEEecCCCCCC-CCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeeccccccccccCCCcCCCcccccccccccCccc
Q 004721 409 LVISKNGASGD-YPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIF 487 (733)
Q Consensus 409 ~iIaHRG~~~~-~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L~rtt~v~~~~~~~r~~~~~~~~~~~g~~ 487 (733)
+||||||+++. +||||++||++|++.|+|+||+|||+||||++||+||.+|+|+|| ++| .
T Consensus 1 ~iiaHRG~~~~~~pENTl~af~~A~~~g~d~iE~DV~~T~Dg~~vv~HD~~l~r~t~------------------~~~-~ 61 (240)
T cd08566 1 LVVAHRGGWGAGAPENSLAAIEAAIDLGADIVEIDVRRTKDGVLVLMHDDTLDRTTN------------------GKG-K 61 (240)
T ss_pred CeEecCCCCCCCCCccHHHHHHHHHHcCCCEEEEEeeEcCCCCEEEECCCCCccccC------------------CCC-c
Confidence 48999999999 999999999999999999999999999999999999999999999 667 7
Q ss_pred ccccCHHHHhccCccccCCCccccccCCcCCCCCccccCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCCcHHHHHHH
Q 004721 488 SFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVME 567 (733)
Q Consensus 488 i~d~T~~EL~~L~~~~~~~~~~~~~~~~~~~~g~~~IptLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~v~~ 567 (733)
|.++|++||++++++.+. ..+. +++||||+|+|+++++. ..++||+|.+ ..+.+++
T Consensus 62 v~~~t~~el~~l~~~~~~----------~~~~-~~~iptL~evl~~~~~~---~~l~iEiK~~----------~~~~~~~ 117 (240)
T cd08566 62 VSDLTLAEIRKLRLKDGD----------GEVT-DEKVPTLEEALAWAKGK---ILLNLDLKDA----------DLDEVIA 117 (240)
T ss_pred hhhCcHHHHHhCCcCCCc----------CCCC-CCCCCCHHHHHHhhhcC---cEEEEEECch----------HHHHHHH
Confidence 999999999999997652 2344 48999999999999886 4899999964 2356899
Q ss_pred HHHHcCCCCCCCceEEEEeCCHHHHHHHHhc-cCceEEEEeecccchhhhHHHHHHHHHHhHhcCCCcccccCCccccc-
Q 004721 568 ALGNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNSAFIT- 645 (733)
Q Consensus 568 ~l~~~~~~~~~~~~vii~Sfd~~~L~~lk~~-p~~~~~~l~~~~~~~~~~~~l~~i~~~a~~i~~~~~~i~~~~~~~l~- 645 (733)
+++++++. ++++++||+++.++.++++ |+++++++......+ ..........+++ ..+.+. +..
T Consensus 118 ~~~~~~~~----~~v~~~sf~~~~l~~~~~~~p~~~~~~l~~~~~~~-----~~~~~~~~~~~~~--~~~~~~---~~~~ 183 (240)
T cd08566 118 LVKKHGAL----DQVIFKSYSEEQAKELRALAPEVMLMPIVRDAEDL-----DEEEARAIDALNL--LAFEIT---FDDL 183 (240)
T ss_pred HHHHcCCc----ccEEEEECCHHHHHHHHHhCCCCEEEEEEccCcch-----hHHHHhcccccce--EEEEEe---cccc
Confidence 99999987 7999999999999999999 999999998543211 1000111111111 112221 111
Q ss_pred cchHHHHHHHHC-CCcEEEEecCCcccccccccCCChHHHHHHHHhhcCcCEEEeCCh
Q 004721 646 SATDIVQRLQSF-KLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFP 702 (733)
Q Consensus 646 ~~~~~v~~~~~~-Gl~v~~wTvn~~~~~~~~~~~~d~~~e~~~~l~~~GVdgIiTD~P 702 (733)
..+..+..++++ |++|++||+|+...........+...++.+++ ++|||||+||+|
T Consensus 184 ~~~~~~~~~~~~~Gl~v~~wTvn~~~~~~~~~~~~~~~~~~~~l~-~~Gvd~I~TD~P 240 (240)
T cd08566 184 DLPPLFDELLRALGIRVWVNTLGDDDTAGLDRALSDPREVWGELV-DAGVDVIQTDRP 240 (240)
T ss_pred ccHHHHHHHHHhCCCEEEEECCCcccccchhhhhhCchhHHHHHH-HcCCCEEecCCC
Confidence 246678888887 99999999996421000000112233788886 999999999998
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase (AtGDE, EC 3.1.4.46) and its uncharacterized eukaryotic homolgoues. Members in this family shows high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. AtGDE exists as a hexamer that is a trimer of dimers, which is unique among current known GDPD family members. However, it remains unclear if the hexamer plays a physiological role in AtGDE enzymatic function. |
| >cd08567 GDPD_SpGDE_like Glycerophosphodiester phosphodiesterase domain of putative Silicibacter pomeroyi glycerophosphodiester phosphodiesterase and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-41 Score=352.34 Aligned_cols=243 Identities=19% Similarity=0.159 Sum_probs=180.4
Q ss_pred EEEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCCccccCccccccccccccccCCC--CCC
Q 004721 93 FVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGV--PTP 170 (733)
Q Consensus 93 ~viaHRG~~~~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l~rtt~~~~~~~~~~~~~~~~g~--~~~ 170 (733)
.||||||+++.+||||++||+.|++.||| +||+|||+||||++||+||.+|+|+|+... +|. +..
T Consensus 2 ~iiaHRG~~~~~pENT~~Af~~A~~~Gad--~vE~DV~~TkDg~~Vv~HD~~l~r~~~r~~-----------~~~~~~~~ 68 (263)
T cd08567 2 DLQGHRGARGLLPENTLPAFAKALDLGVD--TLELDLVLTKDGVIVVSHDPKLNPDITRDP-----------DGAWLPYE 68 (263)
T ss_pred ceEeccCCCCCCCcchHHHHHHHHHcCCC--EEEEEEEEcCCCCEEEeCCCccCcceeecC-----------CCCccccc
Confidence 48999999999999999999999999999 999999999999999999999998653211 010 111
Q ss_pred ccccccCCHHhhccccccccccC--CCCCCCC----CCcccccHHHHHHhhCC-----CceEeeccCchhhh---hcCCc
Q 004721 171 GWFSIDYTLNDLSNIILNQGVYS--RTDKFDG----NGFQILTVQDMARQIKP-----PGLWLNIQHDAFYA---QHNLS 236 (733)
Q Consensus 171 g~~v~d~T~~eL~~l~~~~~~~~--~~~~~~g----~~~~iptL~e~l~~~~~-----~~l~iEiK~~~~~~---~~~~~ 236 (733)
+..|+++||+||++|+++.++.. ....|.+ .+++||||+|+|++++. +.++||+|.+.... .....
T Consensus 69 ~~~v~~~t~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~iptL~evl~~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~ 148 (263)
T cd08567 69 GPALYELTLAEIKQLDVGEKRPGSDYAKLFPEQIPVPGTRIPTLEEVFALVEKYGNQKVRFNIETKSDPDRDILHPPPEE 148 (263)
T ss_pred CcchhcCCHHHHHhcCCCccccCcCcccCCCccccCccccCCCHHHHHHHHHHhccCCceEEEEEcCCCCccccCccHHH
Confidence 23799999999999999887521 1222221 13799999999999964 67999999653221 01234
Q ss_pred HHHHHHHHHhhcCC---ceeccCCHHHHHHHHHhcCCCcccchhhhcCCCccCCCCCcchhHHHhhHHHHHhhcccccCC
Q 004721 237 MRSFVLSVSRSVVV---NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTFASGILVP 313 (733)
Q Consensus 237 ~~~~v~~~l~~~~~---~~i~SF~~~~l~~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~i~~~ 313 (733)
+++.++++++++++ ++++||+++.++.++++.| +.+++++...... ..+... +.. ..+..+++.
T Consensus 149 ~~~~v~~~l~~~~~~~~v~~~Sf~~~~l~~~~~~~p--~~~~~~l~~~~~~------~~~~~~---~~~--~~~~~~~~~ 215 (263)
T cd08567 149 FVDAVLAVIRKAGLEDRVVLQSFDWRTLQEVRRLAP--DIPTVALTEETTL------GNLPRA---AKK--LGADIWSPY 215 (263)
T ss_pred HHHHHHHHHHHcCCCCceEEEeCCHHHHHHHHHHCC--CccEEEEecCCcc------cCHHHH---HHH--hCCcEEecc
Confidence 77899999999876 4899999999999999998 6777763221100 011111 010 112333333
Q ss_pred ccccccCCCccCCCCChHHHHHHHHcCCeEEEeecCCCCCcccCCCCChHHHHHHHHhcCCcccceEEecCCCC
Q 004721 314 KDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLT 387 (733)
Q Consensus 314 ~~~i~~~~~~~~~~~~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~~~~~l~~~G~~~VDgIiTD~P~~ 387 (733)
+. ..++++++.+|++|+.|++||||+. ++|++++++| ||||+||+|++
T Consensus 216 ~~-----------~~~~~~i~~~~~~G~~v~vwtvn~~------------~~~~~~~~~G---vdgi~TD~P~~ 263 (263)
T cd08567 216 FT-----------LVTKELVDEAHALGLKVVPWTVNDP------------EDMARLIDLG---VDGIITDYPDL 263 (263)
T ss_pred hh-----------hcCHHHHHHHHHCCCEEEEecCCCH------------HHHHHHHHcC---CCEEEcCCCCC
Confidence 22 1257899999999999999999864 7899999999 99999999984
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and similar proteins. The prototype of this CD is a putative GP-GDE from Silicibacter pomeroyi (SpGDE). It shows high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. |
| >cd08566 GDPD_AtGDE_like Glycerophosphodiester phosphodiesterase domain of Agrobacterium tumefaciens and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-41 Score=344.51 Aligned_cols=232 Identities=19% Similarity=0.173 Sum_probs=175.5
Q ss_pred EEEEeCCCCCC-CCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCCccccCccccccccccccccCCCCCCc
Q 004721 93 FVVARGGFSGI-FPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPG 171 (733)
Q Consensus 93 ~viaHRG~~~~-~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l~rtt~~~~~~~~~~~~~~~~g~~~~g 171 (733)
+||||||+++. +||||++||+.|++.|+| +||+|||+||||++||+||.+|+|+|++.+
T Consensus 1 ~iiaHRG~~~~~~pENTl~af~~A~~~g~d--~iE~DV~~T~Dg~~vv~HD~~l~r~t~~~~------------------ 60 (240)
T cd08566 1 LVVAHRGGWGAGAPENSLAAIEAAIDLGAD--IVEIDVRRTKDGVLVLMHDDTLDRTTNGKG------------------ 60 (240)
T ss_pred CeEecCCCCCCCCCccHHHHHHHHHHcCCC--EEEEEeeEcCCCCEEEECCCCCccccCCCC------------------
Confidence 48999999999 999999999999999999 999999999999999999999999999876
Q ss_pred cccccCCHHhhccccccccccCCCCCCCCCCcccccHHHHHHhhCC-CceEeeccCchhhhhcCCcHHHHHHHHHhhcCC
Q 004721 172 WFSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKP-PGLWLNIQHDAFYAQHNLSMRSFVLSVSRSVVV 250 (733)
Q Consensus 172 ~~v~d~T~~eL~~l~~~~~~~~~~~~~~g~~~~iptL~e~l~~~~~-~~l~iEiK~~~~~~~~~~~~~~~v~~~l~~~~~ 250 (733)
.+.++||+||++++++.|+ ..|.+ ++||||+|+|+++++ ..++||+|.+ ..+.+++++++++.
T Consensus 61 -~v~~~t~~el~~l~~~~~~----~~~~~--~~iptL~evl~~~~~~~~l~iEiK~~---------~~~~~~~~~~~~~~ 124 (240)
T cd08566 61 -KVSDLTLAEIRKLRLKDGD----GEVTD--EKVPTLEEALAWAKGKILLNLDLKDA---------DLDEVIALVKKHGA 124 (240)
T ss_pred -chhhCcHHHHHhCCcCCCc----CCCCC--CCCCCHHHHHHhhhcCcEEEEEECch---------HHHHHHHHHHHcCC
Confidence 7999999999999999875 34455 899999999999875 6899999964 24678889998876
Q ss_pred ---ceeccCCHHHHHHHHHhcCCCcccchhhhcCCCccCCCCCcchhHHHhhHHHHHh-hcccccCCccccccCCCccCC
Q 004721 251 ---NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKT-FASGILVPKDYIWPVDESLYL 326 (733)
Q Consensus 251 ---~~i~SF~~~~l~~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~-~a~~i~~~~~~i~~~~~~~~~ 326 (733)
++++||+++.+++++++.| +.++++ +..... ....... ..+.. .+.++.+.....
T Consensus 125 ~~~v~~~sf~~~~l~~~~~~~p--~~~~~~-l~~~~~------~~~~~~~---~~~~~~~~~~~~~~~~~~--------- 183 (240)
T cd08566 125 LDQVIFKSYSEEQAKELRALAP--EVMLMP-IVRDAE------DLDEEEA---RAIDALNLLAFEITFDDL--------- 183 (240)
T ss_pred cccEEEEECCHHHHHHHHHhCC--CCEEEE-EEccCc------chhHHHH---hcccccceEEEEEecccc---------
Confidence 4899999999999999998 677665 322110 0000000 00000 112222222110
Q ss_pred CCChHHHHHHHHc-CCeEEEeecCCCCCccc-CCCCChHHHHHHHHhcCCcccceEEecCC
Q 004721 327 LPHTTIVLDAHKE-RLEVFASNFANDIPISF-NYSYDPLTEYLSFIDNGDFSVDGVLSDFP 385 (733)
Q Consensus 327 ~~~~~~v~~ah~~-Gl~V~~WTvn~~~~~~~-~~~~d~~~~~~~l~~~G~~~VDgIiTD~P 385 (733)
..+..+.++|+. |++|++||+|++..... ....++.++|++++++| ||||+||+|
T Consensus 184 -~~~~~~~~~~~~~Gl~v~~wTvn~~~~~~~~~~~~~~~~~~~~l~~~G---vd~I~TD~P 240 (240)
T cd08566 184 -DLPPLFDELLRALGIRVWVNTLGDDDTAGLDRALSDPREVWGELVDAG---VDVIQTDRP 240 (240)
T ss_pred -ccHHHHHHHHHhCCCEEEEECCCcccccchhhhhhCchhHHHHHHHcC---CCEEecCCC
Confidence 135688888887 99999999996311000 00012458999999999 999999998
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase (AtGDE, EC 3.1.4.46) and its uncharacterized eukaryotic homolgoues. Members in this family shows high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. AtGDE exists as a hexamer that is a trimer of dimers, which is unique among current known GDPD family members. However, it remains unclear if the hexamer plays a physiological role in AtGDE enzymatic function. |
| >cd08605 GDPD_GDE5_like_1_plant Glycerophosphodiester phosphodiesterase domain of uncharacterized plant glycerophosphodiester phosphodiesterase-like proteins similar to mammalian GDE5 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=350.81 Aligned_cols=246 Identities=15% Similarity=0.113 Sum_probs=174.8
Q ss_pred EEEeCCCCC-C----------CCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCCccccCcccccccccccc
Q 004721 94 VVARGGFSG-I----------FPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNY 162 (733)
Q Consensus 94 viaHRG~~~-~----------~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l~rtt~~~~~~~~~~~~~ 162 (733)
||||||+.. . +||||++||+.|++.||| +||+|||+||||++||+||++|+|+|++..
T Consensus 2 ~ighrg~~~~~~~~~~~~~~~~~ENTl~Af~~A~~~Gad--~vE~DV~lTkDg~~VV~HD~~l~r~~~g~~--------- 70 (282)
T cd08605 2 VIGHRGLGMNRASHQPSVGPGIRENTIASFIAASKFGAD--FVEFDVQVTRDGVPVIWHDDFIVVERGGEV--------- 70 (282)
T ss_pred eEeccCCCcCcccccccccCCCCCcHHHHHHHHHHcCCC--EEEEEEEECcCCeEEEECCCceecccCCCc---------
Confidence 899999764 3 359999999999999999 999999999999999999999999998621
Q ss_pred ccCCCCCCccccccCCHHhhccccccccccCCC----------CC----CCCCCcccccHHHHHHhhCC-CceEeeccCc
Q 004721 163 LVNGVPTPGWFSIDYTLNDLSNIILNQGVYSRT----------DK----FDGNGFQILTVQDMARQIKP-PGLWLNIQHD 227 (733)
Q Consensus 163 ~~~g~~~~g~~v~d~T~~eL~~l~~~~~~~~~~----------~~----~~g~~~~iptL~e~l~~~~~-~~l~iEiK~~ 227 (733)
..| .|.++||+||++|+++.++...+ .. +...+++||||+|+|++++. .+++||||.+
T Consensus 71 ------~~~-~V~dlT~~EL~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iPtL~evl~~~~~~~~l~IEiK~~ 143 (282)
T cd08605 71 ------ESS-RIRDLTLAELKALGPQAESTKTSTVALYRKAKDPEPEPWIMDVEDSIPTLEEVFSEVPPSLGFNIELKFG 143 (282)
T ss_pred ------Ccc-chhhCcHHHHHhccccccccccCcchhhccccccccccccccccCCCCCHHHHHHhCCCCccEEEEEecC
Confidence 012 69999999999999987542100 00 11114799999999999864 6899999965
Q ss_pred hhhh---hcCCcHHHHHHHHHhhcCC---ceeccCCHHHHHHHHHhcCCCcccchhhhcCCCccCCCCCcchhHHHhhHH
Q 004721 228 AFYA---QHNLSMRSFVLSVSRSVVV---NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLT 301 (733)
Q Consensus 228 ~~~~---~~~~~~~~~v~~~l~~~~~---~~i~SF~~~~l~~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~ 301 (733)
.... +.-...++.+++++++++. ++|+||++++|++++++.| ..+++++ ............. ..+.....
T Consensus 144 ~~~~~~~~~~~~~~~~v~~~i~~~~~~~~viisSF~~~~l~~l~~~~p--~~~~~~L-~~~~~~~~~~~~~-~~~~~~~~ 219 (282)
T cd08605 144 DDNKTEAEELVRELRAILAVCKQHAPGRRIMFSSFDPDAAVLLRALQS--LYPVMFL-TDCGPYTHNDPRR-NSIEAAIQ 219 (282)
T ss_pred ccccchHHHHHHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhcCc--cCCEEEE-ecCCCccccCchh-hhHHHHHH
Confidence 3211 0001134678888888865 5999999999999999998 7788863 3211100000000 00000001
Q ss_pred HHHh-hcccccCCccccccCCCccCCCCChHHHHHHHHcCCeEEEeec--CCCCCcccCCCCChHHHHHHHHhcCCcccc
Q 004721 302 FIKT-FASGILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNF--ANDIPISFNYSYDPLTEYLSFIDNGDFSVD 378 (733)
Q Consensus 302 ~~~~-~a~~i~~~~~~i~~~~~~~~~~~~~~~v~~ah~~Gl~V~~WTv--n~~~~~~~~~~~d~~~~~~~l~~~G~~~VD 378 (733)
.... .+.++++.+..+ ..++++|+++|++|++|++||| |++ ++|++++++| ||
T Consensus 220 ~~~~~~~~~~~~~~~~l---------~~~~~~v~~~~~~Gl~v~vWTv~~n~~------------~~~~~l~~~G---Vd 275 (282)
T cd08605 220 VALEGGLQGIVSEVKVL---------LRNPTAVSLVKASGLELGTYGKLNNDA------------EAVERQADLG---VD 275 (282)
T ss_pred HHHHcCCceEEecHHHh---------hcCcHHHHHHHHcCcEEEEeCCCCCCH------------HHHHHHHHcC---CC
Confidence 1111 234454443321 1247899999999999999998 653 8999999999 99
Q ss_pred eEEecCC
Q 004721 379 GVLSDFP 385 (733)
Q Consensus 379 gIiTD~P 385 (733)
|||||++
T Consensus 276 gIiTD~~ 282 (282)
T cd08605 276 GVIVDHV 282 (282)
T ss_pred EEEeCCC
Confidence 9999986
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized plant glycerophosphodiester phosphodiesterase (GP-PDE)-like proteins. Members in this family show very high sequence homology to mammalian glycerophosphodiester phosphodiesterase GDE5 and are distantly related to plant GP-PDEs. |
| >cd08613 GDPD_GDE4_like_1 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial homologs of mammalian glycerophosphodiester phosphodiesterase GDE4 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-40 Score=342.01 Aligned_cols=260 Identities=12% Similarity=0.129 Sum_probs=185.4
Q ss_pred CCcccccCCCCCEEEEeCCCCCC----------------------CCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEE
Q 004721 81 TSRWQTLTGDPPFVVARGGFSGI----------------------FPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGI 138 (733)
Q Consensus 81 ~~~~~~~~~~~~~viaHRG~~~~----------------------~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lV 138 (733)
++.+.......|+||||||++.. +||||++||++|++.|+| +||+|||+||||++|
T Consensus 13 ~~~~~~~~~~~p~iiaHRG~~~~~~~~~v~~~~~t~~~~~~~~~~~pENTl~Af~~A~~~Gad--~IE~DV~lTkDg~lV 90 (309)
T cd08613 13 TSLLAPPPGGKPKLLAHRGLAQTFDREGVENDTCTAERIDPPTHDYLENTIASMQAAFDAGAD--VVELDVHPTKDGEFA 90 (309)
T ss_pred hhhhccCCCCCceEEeccCCCcccccccccccccccccccCcCCCCCchHHHHHHHHHHcCCC--EEEEEEEEccCCeEE
Confidence 44555566778999999999764 399999999999999999 999999999999999
Q ss_pred EecCCCCccccCccccccccccccccCCCCCCccccccCCHHhhccccccccccCCC-C--CCCCC-CcccccHHHHHHh
Q 004721 139 CFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPGWFSIDYTLNDLSNIILNQGVYSRT-D--KFDGN-GFQILTVQDMARQ 214 (733)
Q Consensus 139 v~HD~~l~rtt~~~~~~~~~~~~~~~~g~~~~g~~v~d~T~~eL~~l~~~~~~~~~~-~--~~~g~-~~~iptL~e~l~~ 214 (733)
|+||++|+|+|++++ .|.|+||+||++|+++.|+.... . .|.+. ..+||||+|+|++
T Consensus 91 V~HD~tL~R~T~g~g-------------------~V~dlTlaEL~~Ld~g~~~~~~~g~~~p~~~~~~~~IPTL~EvL~~ 151 (309)
T cd08613 91 VFHDWTLDCRTDGSG-------------------VTRDHTMAELKTLDIGYGYTADGGKTFPFRGKGVGMMPTLDEVFAA 151 (309)
T ss_pred EEecCccccccCCCC-------------------chhhCCHHHHhhCCcCcccccccccccccccCCCCCCcCHHHHHHh
Confidence 999999999999876 79999999999999998764311 1 12321 2479999999999
Q ss_pred hCCCceEeeccCchhhhhcCCcHHHHHHHHHhhcCCc--eeccCC--HHHHHHHHHhcCCCcccchhhhcCCCccCCCCC
Q 004721 215 IKPPGLWLNIQHDAFYAQHNLSMRSFVLSVSRSVVVN--YISSPE--VNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTN 290 (733)
Q Consensus 215 ~~~~~l~iEiK~~~~~~~~~~~~~~~v~~~l~~~~~~--~i~SF~--~~~l~~l~~~~p~~~~~~~~~l~~~~~~~~~~~ 290 (733)
++..+++||||.+.. ...+.+++++++++.. .+.||+ +..+++++++.| +.++.- ....
T Consensus 152 ~~~~~l~IEiK~~~~------~~~~~v~~~i~~~~~~r~~v~sf~s~~~~l~~~r~l~P--~~~~~s----~~~~----- 214 (309)
T cd08613 152 FPDRRFLINFKSDDA------AEGELLAEKLATLPRKRLQVLTVYGGDKPIAALRELTP--DLRTLS----KASM----- 214 (309)
T ss_pred cCCCcEEEEeCCCCc------cHHHHHHHHHHhcCccceEEEEEECCHHHHHHHHHHCC--CCceec----ccch-----
Confidence 988889999996531 2457888999988763 667777 888999999998 444331 1100
Q ss_pred cchhHHHhhHHHHHhhcccccCCc----cccccCCCccCCCC-ChHHHHHHHHcCCeEEEeecCCCCCcccCCCCChHHH
Q 004721 291 QTYGSLLKNLTFIKTFASGILVPK----DYIWPVDESLYLLP-HTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTE 365 (733)
Q Consensus 291 ~~~~~~~~~l~~~~~~a~~i~~~~----~~i~~~~~~~~~~~-~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~~ 365 (733)
. .. .+..+...-.+..|.. ...+|......+.. ++.|++++|++|.+|++|.-.+- ..+..+.|++++
T Consensus 215 ~--~~---~~~~~~~~~~g~~p~~~~~~~~~vP~~~~~~~~~w~~~f~~~~~~~g~~V~~~~~~~~--~~~~~~~d~~~~ 287 (309)
T cd08613 215 K--DC---LIEYLALGWTGYVPDSCRNTTLLIPLNYAPWLWGWPNRFLARMEAAGTRVILVGPYTG--GEFSEGFDTPED 287 (309)
T ss_pred H--HH---HHHHHhhcccccCCccccCCeEecCccccceEEeCCHHHHHHHHHcCCeEEEEecccC--CcccCCCCCHHH
Confidence 0 00 0111111112222222 11223222222333 68899999999999999921000 001112345699
Q ss_pred HHHHHhcCCcccceEEecCCCCc
Q 004721 366 YLSFIDNGDFSVDGVLSDFPLTP 388 (733)
Q Consensus 366 ~~~l~~~G~~~VDgIiTD~P~~~ 388 (733)
|+++.+.| +|||+||+|+.+
T Consensus 288 ~~~l~~~~---~~gi~T~r~~~l 307 (309)
T cd08613 288 LKRLPEGF---TGYIWTNKIEAL 307 (309)
T ss_pred HHHHHhhC---CCeEEeCCHhhc
Confidence 99999999 999999999975
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial homologs of mammalian GDE4, a transmembrane protein whose cellular function has not been elucidated yet. |
| >cd08585 GDPD_like_3 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-39 Score=332.11 Aligned_cols=224 Identities=17% Similarity=0.091 Sum_probs=174.6
Q ss_pred ceEEecCCCCCC---CCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeeccccccccccCCCcCCCcccccccccccC
Q 004721 408 LLVISKNGASGD---YPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGS 484 (733)
Q Consensus 408 ~~iIaHRG~~~~---~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L~rtt~v~~~~~~~r~~~~~~~~~~~ 484 (733)
+.+|||||+++. +||||++||++|++.|+ +||+|||+||||++||+||.+|+|+|| ++
T Consensus 4 ~~~iaHRG~~~~~~~~pENTl~af~~A~~~G~-~iE~DV~lT~Dg~lVv~HD~~l~r~t~------------------~~ 64 (237)
T cd08585 4 DRPIAHRGLHDRDAGIPENSLSAFRAAAEAGY-GIELDVQLTADGEVVVFHDDNLKRLTG------------------VE 64 (237)
T ss_pred CCceECCCCCCCCCCCCccHHHHHHHHHHcCC-cEEEEeeECCCCCEEEeccchHhhhcC------------------CC
Confidence 457999999874 79999999999999999 899999999999999999999999999 66
Q ss_pred cccccccCHHHHhccCccccCCCccccccCCcCCCCCccccCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCCcHHHH
Q 004721 485 GIFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNS 564 (733)
Q Consensus 485 g~~i~d~T~~EL~~L~~~~~~~~~~~~~~~~~~~~g~~~IptLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~ 564 (733)
| .|.++|++||++++++. . +++||||+|+|+.+++. ..++||||.+... ...+++.
T Consensus 65 ~-~v~~~t~~eL~~l~~~~---------------~-~~~iPtL~evl~~~~~~---~~l~iEiK~~~~~----~~~l~~~ 120 (237)
T cd08585 65 G-RVEELTAAELRALRLLG---------------T-DEHIPTLDEVLELVAGR---VPLLIELKSCGGG----DGGLERR 120 (237)
T ss_pred C-ccccCCHHHHhcCCCCC---------------C-CCCCCCHHHHHHHhccC---ceEEEEEccCCcc----chHHHHH
Confidence 6 79999999999998752 1 47899999999999864 4799999975431 2357888
Q ss_pred HHHHHHHcCCCCCCCceEEEEeCCHHHHHHHHhc-cCceEEEEeecccchhhhHHHHH--HHHH--HhHhcCCCcccccC
Q 004721 565 VMEALGNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDALNQTIED--IKKF--ADSVVLSKESVYPL 639 (733)
Q Consensus 565 v~~~l~~~~~~~~~~~~vii~Sfd~~~L~~lk~~-p~~~~~~l~~~~~~~~~~~~l~~--i~~~--a~~i~~~~~~i~~~ 639 (733)
+++++++++ .+++++||++..|+++++. |++++++++.....+........ .... ....++ ..+.+.
T Consensus 121 v~~~l~~~~------~~v~i~SF~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 192 (237)
T cd08585 121 VLAALKDYK------GPAAIMSFDPRVVRWFRKLAPGIPRGQLSEGSNDEADPAFWNEALLSALFSNLLTRP--DFIAYH 192 (237)
T ss_pred HHHHHHhcC------CCEEEEECCHHHHHHHHHHCCCCCEEEEecCCcccccccchhHHHHHhhhhhhccCC--CEEEeC
Confidence 999998863 4899999999999999999 99999999854321110000000 0000 001122 122221
Q ss_pred CccccccchHHHHHHHHC-CCcEEEEecCCcccccccccCCChHHHHHHHHhhcCcCEEEe
Q 004721 640 NSAFITSATDIVQRLQSF-KLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVIT 699 (733)
Q Consensus 640 ~~~~l~~~~~~v~~~~~~-Gl~v~~wTvn~~~~~~~~~~~~d~~~e~~~~l~~~GVdgIiT 699 (733)
+...++++++.+|++ |++|++||||++. ++.+++ ++|+++||-
T Consensus 193 ---~~~~~~~~v~~~~~~~G~~v~vWTVnd~~-------------~~~~l~-~~G~~~i~~ 236 (237)
T cd08585 193 ---LDDLPNPFVTLARALLGMPVIVWTVRTEE-------------DIARLK-QYADNIIFE 236 (237)
T ss_pred ---hhhCcCHHHHHHHHhcCCcEEEEeCCCHH-------------HHHHHH-HhCCeeEeC
Confidence 112367899999999 9999999999997 899987 999999873
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity with Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. |
| >cd08585 GDPD_like_3 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-39 Score=332.41 Aligned_cols=225 Identities=16% Similarity=0.064 Sum_probs=169.7
Q ss_pred CEEEEeCCCCCC---CCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCCccccCccccccccccccccCCCC
Q 004721 92 PFVVARGGFSGI---FPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVP 168 (733)
Q Consensus 92 ~~viaHRG~~~~---~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l~rtt~~~~~~~~~~~~~~~~g~~ 168 (733)
+.+|||||+++. +||||++||+.|++.|+ +||+|||+||||++||+||.+|+|+|++++
T Consensus 4 ~~~iaHRG~~~~~~~~pENTl~af~~A~~~G~---~iE~DV~lT~Dg~lVv~HD~~l~r~t~~~~--------------- 65 (237)
T cd08585 4 DRPIAHRGLHDRDAGIPENSLSAFRAAAEAGY---GIELDVQLTADGEVVVFHDDNLKRLTGVEG--------------- 65 (237)
T ss_pred CCceECCCCCCCCCCCCccHHHHHHHHHHcCC---cEEEEeeECCCCCEEEeccchHhhhcCCCC---------------
Confidence 348999999874 79999999999999995 799999999999999999999999999876
Q ss_pred CCccccccCCHHhhccccccccccCCCCCCCCCCcccccHHHHHHhhC-CCceEeeccCchhhhhcCCcHHHHHHHHHhh
Q 004721 169 TPGWFSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIK-PPGLWLNIQHDAFYAQHNLSMRSFVLSVSRS 247 (733)
Q Consensus 169 ~~g~~v~d~T~~eL~~l~~~~~~~~~~~~~~g~~~~iptL~e~l~~~~-~~~l~iEiK~~~~~~~~~~~~~~~v~~~l~~ 247 (733)
.|.++||+||++|+++. . +++||||+|+|++++ +..++||+|.+... ...+++.+++++++
T Consensus 66 ----~v~~~t~~eL~~l~~~~---------~--~~~iPtL~evl~~~~~~~~l~iEiK~~~~~---~~~l~~~v~~~l~~ 127 (237)
T cd08585 66 ----RVEELTAAELRALRLLG---------T--DEHIPTLDEVLELVAGRVPLLIELKSCGGG---DGGLERRVLAALKD 127 (237)
T ss_pred ----ccccCCHHHHhcCCCCC---------C--CCCCCCHHHHHHHhccCceEEEEEccCCcc---chHHHHHHHHHHHh
Confidence 79999999999999863 1 479999999999996 46799999965421 23578889999988
Q ss_pred cCC-ceeccCCHHHHHHHHHhcCCCcccchhhhcCCCccCCCCCcchhH-HHhhHH-HHHhhcccccCCccccccCCCcc
Q 004721 248 VVV-NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGS-LLKNLT-FIKTFASGILVPKDYIWPVDESL 324 (733)
Q Consensus 248 ~~~-~~i~SF~~~~l~~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~l~-~~~~~a~~i~~~~~~i~~~~~~~ 324 (733)
++. ++|+||+++.++++++..| +++++++. ....... ....+.. +...+. .....++.+.+.+..
T Consensus 128 ~~~~v~i~SF~~~~l~~l~~~~p--~~~~~~l~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 195 (237)
T cd08585 128 YKGPAAIMSFDPRVVRWFRKLAP--GIPRGQLS-EGSNDEA-DPAFWNEALLSALFSNLLTRPDFIAYHLDD-------- 195 (237)
T ss_pred cCCCEEEEECCHHHHHHHHHHCC--CCCEEEEe-cCCcccc-cccchhHHHHHhhhhhhccCCCEEEeChhh--------
Confidence 753 5899999999999999998 77877633 2111000 0000000 000000 000112222222221
Q ss_pred CCCCChHHHHHHHHc-CCeEEEeecCCCCCcccCCCCChHHHHHHHHhcCCcccceEEe
Q 004721 325 YLLPHTTIVLDAHKE-RLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLS 382 (733)
Q Consensus 325 ~~~~~~~~v~~ah~~-Gl~V~~WTvn~~~~~~~~~~~d~~~~~~~l~~~G~~~VDgIiT 382 (733)
.++++|+.+|++ |++|++||||++ ++|++++++| +|+||-
T Consensus 196 ---~~~~~v~~~~~~~G~~v~vWTVnd~------------~~~~~l~~~G---~~~i~~ 236 (237)
T cd08585 196 ---LPNPFVTLARALLGMPVIVWTVRTE------------EDIARLKQYA---DNIIFE 236 (237)
T ss_pred ---CcCHHHHHHHHhcCCcEEEEeCCCH------------HHHHHHHHhC---CeeEeC
Confidence 246799999999 999999999875 8999999999 999984
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity with Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. |
| >cd08583 PI-PLCc_GDPD_SF_unchar1 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-39 Score=330.67 Aligned_cols=231 Identities=13% Similarity=0.132 Sum_probs=173.8
Q ss_pred EEecCCC--CCCCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeeccccccccccCCCcCCCcccccccccccCccc
Q 004721 410 VISKNGA--SGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIF 487 (733)
Q Consensus 410 iIaHRG~--~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L~rtt~v~~~~~~~r~~~~~~~~~~~g~~ 487 (733)
+|||||+ ++.+||||++||++|++.|+|+||+|||+||||++||+||.+++|+.+... ..++ .
T Consensus 1 ~~aHRG~G~~~~~pENTl~Af~~A~~~G~d~iE~DV~lTkDg~lVv~HD~~~~r~~~~g~--------------~~~~-~ 65 (237)
T cd08583 1 LIAHAMGGIDGKTYTNSLDAFEHNYKKGYRVFEVDLSLTSDGVLVARHSWDESLLKQLGL--------------PTSK-N 65 (237)
T ss_pred CeeecCCCCCCCCCccHHHHHHHHHHhCCCEEEEEeeEccCCCEEEEECCcCchhhhcCC--------------cccc-c
Confidence 4899996 688999999999999999999999999999999999999999987532100 0144 6
Q ss_pred ccccCHHHHhccCccccCCCccccccCCcCCCCCccccCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCCcHHHHHHH
Q 004721 488 SFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVME 567 (733)
Q Consensus 488 i~d~T~~EL~~L~~~~~~~~~~~~~~~~~~~~g~~~IptLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~v~~ 567 (733)
+.++|++||++++.. . +++||||+|+|+++++.++ +.++||||.+.... -..+.+.+++
T Consensus 66 i~~~t~~el~~~~~~----------------~-~~~iptL~evl~~~~~~~~-~~l~iEiK~~~~~~---~~~~~~~l~~ 124 (237)
T cd08583 66 TKPLSYEEFKSKKIY----------------G-KYTPMDFKDVIDLLKKYPD-VYIVTDTKQDDDND---IKKLYEYIVK 124 (237)
T ss_pred ccCCCHHHHhhcccc----------------C-CCCCCCHHHHHHHHHhCCC-eEEEEEecCCCccc---HHHHHHHHHH
Confidence 899999999886642 2 3789999999999986434 37999999653210 0135668889
Q ss_pred HHHHc--CCCCCCCceEEEEeCCHHHHHHHHhc-cCceEEEEeecccchhhhHHHHHHHHHHhHhcCCCcccccCCcccc
Q 004721 568 ALGNA--GYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNSAFI 644 (733)
Q Consensus 568 ~l~~~--~~~~~~~~~vii~Sfd~~~L~~lk~~-p~~~~~~l~~~~~~~~~~~~l~~i~~~a~~i~~~~~~i~~~~~~~l 644 (733)
.++++ ++. +||+++||++.+|+.+++. |....+++...... ..+..+..++..++. ..+.+.. .
T Consensus 125 ~~~~~~~~~~----~~v~~~SF~~~~L~~~~~~~p~~~~~~~~~~~~~----~~~~~~~~~~~~~~~--~~~~~~~---~ 191 (237)
T cd08583 125 EAKEVDPDLL----DRVIPQIYNEEMYEAIMSIYPFKSVIYTLYRQDS----IRLDEIIAFCYENGI--KAVTISK---N 191 (237)
T ss_pred HHHhhccccc----ceeEEEecCHHHHHHHHHhCCCcceeeEeccccc----cchHHHHHHHHHcCC--cEEEech---h
Confidence 99886 466 7999999999999999999 87666555422100 011222223333322 2233221 1
Q ss_pred ccchHHHHHHHHCCCcEEEEecCCcccccccccCCChHHHHHHHHhhcCcCEEEeCChH
Q 004721 645 TSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPM 703 (733)
Q Consensus 645 ~~~~~~v~~~~~~Gl~v~~wTvn~~~~~~~~~~~~d~~~e~~~~l~~~GVdgIiTD~P~ 703 (733)
..++.+++.+|++|+.|++||||++. +|.+++ ++|||||+||+|.
T Consensus 192 ~~~~~~v~~~~~~Gl~v~vwTVn~~~-------------~~~~l~-~~GVdgiiTD~~~ 236 (237)
T cd08583 192 YVNDKLIEKLNKAGIYVYVYTINDLK-------------DAQEYK-KLGVYGIYTDFLT 236 (237)
T ss_pred hcCHHHHHHHHHCCCEEEEEeCCCHH-------------HHHHHH-HcCCCEEEeCCCC
Confidence 34689999999999999999999987 899897 9999999999984
|
This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues. |
| >cd08583 PI-PLCc_GDPD_SF_unchar1 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-38 Score=324.45 Aligned_cols=224 Identities=11% Similarity=0.145 Sum_probs=164.5
Q ss_pred EEEeCCC--CCCCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCCcccc-CccccccccccccccCCCCCC
Q 004721 94 VVARGGF--SGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNAS-NIAQIFKTQQKNYLVNGVPTP 170 (733)
Q Consensus 94 viaHRG~--~~~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l~rtt-~~~~~~~~~~~~~~~~g~~~~ 170 (733)
+|||||+ ++.+||||++||+.|++.|+| +||+|||+||||++||+||++++|+. .+.. ..
T Consensus 1 ~~aHRG~G~~~~~pENTl~Af~~A~~~G~d--~iE~DV~lTkDg~lVv~HD~~~~r~~~~g~~---------------~~ 63 (237)
T cd08583 1 LIAHAMGGIDGKTYTNSLDAFEHNYKKGYR--VFEVDLSLTSDGVLVARHSWDESLLKQLGLP---------------TS 63 (237)
T ss_pred CeeecCCCCCCCCCccHHHHHHHHHHhCCC--EEEEEeeEccCCCEEEEECCcCchhhhcCCc---------------cc
Confidence 4899996 789999999999999999999 99999999999999999999998852 2210 00
Q ss_pred ccccccCCHHhhccccccccccCCCCCCCCCCcccccHHHHHHhhCC---CceEeeccCchhhhhcCCcHHHHHHHHHhh
Q 004721 171 GWFSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKP---PGLWLNIQHDAFYAQHNLSMRSFVLSVSRS 247 (733)
Q Consensus 171 g~~v~d~T~~eL~~l~~~~~~~~~~~~~~g~~~~iptL~e~l~~~~~---~~l~iEiK~~~~~~~~~~~~~~~v~~~l~~ 247 (733)
+ .+.++|++||++++.. + +++||||+|+|+++++ +.++||||.+.. .....++..+++.+++
T Consensus 64 ~-~i~~~t~~el~~~~~~----------~--~~~iptL~evl~~~~~~~~~~l~iEiK~~~~--~~~~~~~~~l~~~~~~ 128 (237)
T cd08583 64 K-NTKPLSYEEFKSKKIY----------G--KYTPMDFKDVIDLLKKYPDVYIVTDTKQDDD--NDIKKLYEYIVKEAKE 128 (237)
T ss_pred c-cccCCCHHHHhhcccc----------C--CCCCCCHHHHHHHHHhCCCeEEEEEecCCCc--ccHHHHHHHHHHHHHh
Confidence 1 5889999999987643 2 3799999999999862 568999996432 1111356678888887
Q ss_pred cC--C---ceeccCCHHHHHHHHHhcCCCcccchhhhcCCCccCCCCCcchhHHHhhHHHHHh-hcccccCCccccccCC
Q 004721 248 VV--V---NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKT-FASGILVPKDYIWPVD 321 (733)
Q Consensus 248 ~~--~---~~i~SF~~~~l~~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~-~a~~i~~~~~~i~~~~ 321 (733)
++ + ++++||+++.|+.+++..| ....++....... ...... +..+.. .+.++++.+..
T Consensus 129 ~~~~~~~~v~~~SF~~~~L~~~~~~~p--~~~~~~~~~~~~~------~~~~~~---~~~~~~~~~~~~~~~~~~----- 192 (237)
T cd08583 129 VDPDLLDRVIPQIYNEEMYEAIMSIYP--FKSVIYTLYRQDS------IRLDEI---IAFCYENGIKAVTISKNY----- 192 (237)
T ss_pred hcccccceeEEEecCHHHHHHHHHhCC--CcceeeEeccccc------cchHHH---HHHHHHcCCcEEEechhh-----
Confidence 53 3 4899999999999999987 3333332211110 000110 111111 23334444332
Q ss_pred CccCCCCChHHHHHHHHcCCeEEEeecCCCCCcccCCCCChHHHHHHHHhcCCcccceEEecCCC
Q 004721 322 ESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPL 386 (733)
Q Consensus 322 ~~~~~~~~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~~~~~l~~~G~~~VDgIiTD~P~ 386 (733)
.++.+++++|++|++|++||||++ ++|++++++| |||||||+|.
T Consensus 193 ------~~~~~v~~~~~~Gl~v~vwTVn~~------------~~~~~l~~~G---VdgiiTD~~~ 236 (237)
T cd08583 193 ------VNDKLIEKLNKAGIYVYVYTINDL------------KDAQEYKKLG---VYGIYTDFLT 236 (237)
T ss_pred ------cCHHHHHHHHHCCCEEEEEeCCCH------------HHHHHHHHcC---CCEEEeCCCC
Confidence 247899999999999999999875 8999999999 9999999985
|
This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues. |
| >COG0584 UgpQ Glycerophosphoryl diester phosphodiesterase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-38 Score=328.24 Aligned_cols=242 Identities=24% Similarity=0.316 Sum_probs=192.1
Q ss_pred CCEEEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCCccccCccccccccccccccCCCCCC
Q 004721 91 PPFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTP 170 (733)
Q Consensus 91 ~~~viaHRG~~~~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l~rtt~~~~~~~~~~~~~~~~g~~~~ 170 (733)
.|+||||||+++.+||||++||+.|++.|+| +||+|||+||||++||+||++++|||++.+
T Consensus 5 ~~~iiaHRG~s~~~PENTl~Af~~A~~~gad--~iE~Dv~lTkDg~lVv~HD~~~drt~~~~~----------------- 65 (257)
T COG0584 5 MPLIIAHRGASGYAPENTLAAFELAAEQGAD--YIELDVQLTKDGVLVVIHDETLDRTTNGLG----------------- 65 (257)
T ss_pred ceEEEeccCcCCCCCcchHHHHHHHHHcCCC--EEEeeccCccCCcEEEecccchhhhccCcc-----------------
Confidence 5789999999999999999999999999999 999999999999999999999999999876
Q ss_pred ccccccCCHHhhccccccccccCCCCCCCCCCcccccHHHHHHhhC-CCceEeeccCchhhhhcCCcHHHHHHHHHhhcC
Q 004721 171 GWFSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIK-PPGLWLNIQHDAFYAQHNLSMRSFVLSVSRSVV 249 (733)
Q Consensus 171 g~~v~d~T~~eL~~l~~~~~~~~~~~~~~g~~~~iptL~e~l~~~~-~~~l~iEiK~~~~~~~~~~~~~~~v~~~l~~~~ 249 (733)
.+.++|++|+++++.+.+. ...+ + +.+|||+|+++.+. ++++++|+|.+........ ....++..+.+..
T Consensus 66 --~~~~~~~~~~~~~~~~~~~---~~~~-~--~~ip~l~~~l~~~~~~~~l~ieiK~~~~~~~~~~-~~~~~~~~~~~~~ 136 (257)
T COG0584 66 --TVRDLTLAELKRLDAGSFR---IPTF-G--EEIPTLEELLEATGRKIGLYIEIKSPGFHPQEGK-ILAALLALLKRYG 136 (257)
T ss_pred --ccccCChhhhcCcccCccc---CCCC-C--CccCCHHHHHHHhcccCCeEEEecCCCcccchhh-hHHHHHHHHHHhc
Confidence 6779999999999966542 3444 4 79999999999884 6899999998765543311 4455555555542
Q ss_pred ------CceeccCCHHHHHHHHHhcCCCcccchhhhcCCCccCCCCCcchhHH--HhhHHHHHhhcccccCCccccccCC
Q 004721 250 ------VNYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSL--LKNLTFIKTFASGILVPKDYIWPVD 321 (733)
Q Consensus 250 ------~~~i~SF~~~~l~~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~l~~~~~~a~~i~~~~~~i~~~~ 321 (733)
.++++||++..+.++++..| .+++++ +..... .|..+ ...+..+..++.++++.+..+.+.
T Consensus 137 ~~~~~~~v~~~Sf~~~~l~~~~~~~p--~~~~~~-l~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~- 205 (257)
T COG0584 137 GTAADDRVILSSFDHAALKRIKRLAP--DLPLGL-LLDATD-------QYDWMELPRALKEVALYADGVGPDWAMLAEL- 205 (257)
T ss_pred ccCCCCceEEEecCHHHHHHHHHhCc--CCceEE-EEcccc-------hhhhhhccchhhHHHhhhcccCcccceeccc-
Confidence 35999999999999999998 678876 332210 01111 124556677888888776554321
Q ss_pred CccCCCCChHHHHHHHHcCCeEEEeecCCCCCcccCCCCChHHHHHHHHhcCCcccceEEecCCCCccccch
Q 004721 322 ESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPSAAVD 393 (733)
Q Consensus 322 ~~~~~~~~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~~~~~l~~~G~~~VDgIiTD~P~~~~~~l~ 393 (733)
.+.++..+|..|+.|++||||++ +.++.+.+.| ||||+||+|+.+.+.+.
T Consensus 206 -------~~~~v~~~~~~gl~v~~~tv~~~------------~~~~~~~~~g---vd~i~td~p~~~~~~~~ 255 (257)
T COG0584 206 -------LTELVDDAHAAGLKVHVWTVNEE------------DDIRLLLEAG---VDGLITDFPDLAVAFLN 255 (257)
T ss_pred -------ccHHHHHHHhCCCeEEEEecCcH------------HHHHHHHHcC---CCEEEcCCHHHHHHhhc
Confidence 25799999999999999999975 4489999999 99999999998876553
|
|
| >COG0584 UgpQ Glycerophosphoryl diester phosphodiesterase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=324.79 Aligned_cols=247 Identities=26% Similarity=0.336 Sum_probs=195.4
Q ss_pred cceEEecCCCCCCCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeeccccccccccCCCcCCCcccccccccccCcc
Q 004721 407 NLLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGI 486 (733)
Q Consensus 407 ~~~iIaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L~rtt~v~~~~~~~r~~~~~~~~~~~g~ 486 (733)
.++||||||+++.+||||++||+.|++.|+|+||+|||+||||++||+||.+++|||+ +.|
T Consensus 5 ~~~iiaHRG~s~~~PENTl~Af~~A~~~gad~iE~Dv~lTkDg~lVv~HD~~~drt~~------------------~~~- 65 (257)
T COG0584 5 MPLIIAHRGASGYAPENTLAAFELAAEQGADYIELDVQLTKDGVLVVIHDETLDRTTN------------------GLG- 65 (257)
T ss_pred ceEEEeccCcCCCCCcchHHHHHHHHHcCCCEEEeeccCccCCcEEEecccchhhhcc------------------Ccc-
Confidence 5789999999999999999999999999999999999999999999999999999999 666
Q ss_pred cccccCHHHHhccCccccCCCccccccCCcCCCCCccccCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCCc-HHHHH
Q 004721 487 FSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMS-VTNSV 565 (733)
Q Consensus 487 ~i~d~T~~EL~~L~~~~~~~~~~~~~~~~~~~~g~~~IptLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~-~~~~v 565 (733)
.+.++|++|+.+++.+.+. .+.+ .+.+|||+|++..+ +. + .++++|||.+....+ .. +...+
T Consensus 66 ~~~~~~~~~~~~~~~~~~~---------~~~~--~~~ip~l~~~l~~~-~~-~-~~l~ieiK~~~~~~~---~~~~~~~~ 128 (257)
T COG0584 66 TVRDLTLAELKRLDAGSFR---------IPTF--GEEIPTLEELLEAT-GR-K-IGLYIEIKSPGFHPQ---EGKILAAL 128 (257)
T ss_pred ccccCChhhhcCcccCccc---------CCCC--CCccCCHHHHHHHh-cc-c-CCeEEEecCCCcccc---hhhhHHHH
Confidence 6889999999999955432 2334 38999999999999 42 2 389999998765432 12 45667
Q ss_pred HHHHHHcCCCCCCCceEEEEeCCHHHHHHHHhc-cCceEEEEeeccc---chhhhHHHHHHHHHHhHhcCCCcccccCCc
Q 004721 566 MEALGNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENI---RDALNQTIEDIKKFADSVVLSKESVYPLNS 641 (733)
Q Consensus 566 ~~~l~~~~~~~~~~~~vii~Sfd~~~L~~lk~~-p~~~~~~l~~~~~---~~~~~~~l~~i~~~a~~i~~~~~~i~~~~~ 641 (733)
+..+.+.... ...++++++||+...+..+++. |.+++++++.... ....+..+..+..++.++++....+.+
T Consensus 129 ~~~~~~~~~~-~~~~~v~~~Sf~~~~l~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--- 204 (257)
T COG0584 129 LALLKRYGGT-AADDRVILSSFDHAALKRIKRLAPDLPLGLLLDATDQYDWMELPRALKEVALYADGVGPDWAMLAE--- 204 (257)
T ss_pred HHHHHHhccc-CCCCceEEEecCHHHHHHHHHhCcCCceEEEEcccchhhhhhccchhhHHHhhhcccCcccceecc---
Confidence 7777666431 1116999999999999999999 9999999998641 112334455566666666553322211
Q ss_pred cccccchHHHHHHHHCCCcEEEEecCCcccccccccCCChHHHHHHHHhhcCcCEEEeCChHHHHHHHHh
Q 004721 642 AFITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPMTAARYRSK 711 (733)
Q Consensus 642 ~~l~~~~~~v~~~~~~Gl~v~~wTvn~~~~~~~~~~~~d~~~e~~~~l~~~GVdgIiTD~P~~~~~~l~~ 711 (733)
..+.++..+|..|+.|++||+|+++ .+..+. +.|||||+||+|+.+..++..
T Consensus 205 ----~~~~~v~~~~~~gl~v~~~tv~~~~-------------~~~~~~-~~gvd~i~td~p~~~~~~~~~ 256 (257)
T COG0584 205 ----LLTELVDDAHAAGLKVHVWTVNEED-------------DIRLLL-EAGVDGLITDFPDLAVAFLNK 256 (257)
T ss_pred ----cccHHHHHHHhCCCeEEEEecCcHH-------------HHHHHH-HcCCCEEEcCCHHHHHHhhcc
Confidence 0367899999999999999999996 466665 999999999999999887654
|
|
| >cd08613 GDPD_GDE4_like_1 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial homologs of mammalian glycerophosphodiester phosphodiesterase GDE4 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=323.38 Aligned_cols=241 Identities=17% Similarity=0.171 Sum_probs=179.9
Q ss_pred cCCcceEEecCCCCCC----------------------CCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeecccccc
Q 004721 404 KSANLLVISKNGASGD----------------------YPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLIN 461 (733)
Q Consensus 404 ~~~~~~iIaHRG~~~~----------------------~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L~r 461 (733)
....|+||||||.+.. +||||++||++|++.|+|+||+|||+||||++||+||.+|+|
T Consensus 20 ~~~~p~iiaHRG~~~~~~~~~v~~~~~t~~~~~~~~~~~pENTl~Af~~A~~~Gad~IE~DV~lTkDg~lVV~HD~tL~R 99 (309)
T cd08613 20 PGGKPKLLAHRGLAQTFDREGVENDTCTAERIDPPTHDYLENTIASMQAAFDAGADVVELDVHPTKDGEFAVFHDWTLDC 99 (309)
T ss_pred CCCCceEEeccCCCcccccccccccccccccccCcCCCCCchHHHHHHHHHHcCCCEEEEEEEEccCCeEEEEecCcccc
Confidence 4457899999998765 399999999999999999999999999999999999999999
Q ss_pred ccccCCCcCCCcccccccccccCcccccccCHHHHhccCccccCCC--ccccccCCcCCCCCccccCHHHHHHHHHhcCC
Q 004721 462 STNAAQSKFNSITTTIPEIMAGSGIFSFSLIWDEIQTLIPQISNPY--FKFKLFRNPKNKNAGKFMKLSDFLEMAKNANS 539 (733)
Q Consensus 462 tt~v~~~~~~~r~~~~~~~~~~~g~~i~d~T~~EL~~L~~~~~~~~--~~~~~~~~~~~~g~~~IptLeEvL~~~~~~~~ 539 (733)
+|| ++| .|.|+|++||++|+++.+.+. +..++++ ..+..+||||+|+|+++++.
T Consensus 100 ~T~------------------g~g-~V~dlTlaEL~~Ld~g~~~~~~~g~~~p~~---~~~~~~IPTL~EvL~~~~~~-- 155 (309)
T cd08613 100 RTD------------------GSG-VTRDHTMAELKTLDIGYGYTADGGKTFPFR---GKGVGMMPTLDEVFAAFPDR-- 155 (309)
T ss_pred ccC------------------CCC-chhhCCHHHHhhCCcCcccccccccccccc---cCCCCCCcCHHHHHHhcCCC--
Confidence 999 777 799999999999999765321 0011111 11124799999999999764
Q ss_pred CceEEEEecchhHHHhhcCCcHHHHHHHHHHHcCCCCCCCceEEEEeCC--HHHHHHHHhc-cCceEEEEeecccchhhh
Q 004721 540 LSGVLISIENAVYLAEKQGMSVTNSVMEALGNAGYNKQTALKVMIQSTD--SSVLMKLREK-TSYELVYKVKENIRDALN 616 (733)
Q Consensus 540 ~~~l~iEiK~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~vii~Sfd--~~~L~~lk~~-p~~~~~~l~~~~~~~~~~ 616 (733)
.++||||.+.. ...+.+.++|+++++. ++.+.||+ +..+++++++ |++++.--...
T Consensus 156 --~l~IEiK~~~~-------~~~~~v~~~i~~~~~~-----r~~v~sf~s~~~~l~~~r~l~P~~~~~s~~~~------- 214 (309)
T cd08613 156 --RFLINFKSDDA-------AEGELLAEKLATLPRK-----RLQVLTVYGGDKPIAALRELTPDLRTLSKASM------- 214 (309)
T ss_pred --cEEEEeCCCCc-------cHHHHHHHHHHhcCcc-----ceEEEEEECCHHHHHHHHHHCCCCceecccch-------
Confidence 79999997641 3457889999999875 66777777 7889999999 99977421110
Q ss_pred HHHHHHHHHHh----HhcCCC----cccccCC-cccccc-chHHHHHHHHCCCcEEEE----------ecCCcccccccc
Q 004721 617 QTIEDIKKFAD----SVVLSK----ESVYPLN-SAFITS-ATDIVQRLQSFKLPVYVE----------TFSNEFVSQAWD 676 (733)
Q Consensus 617 ~~l~~i~~~a~----~i~~~~----~~i~~~~-~~~l~~-~~~~v~~~~~~Gl~v~~w----------Tvn~~~~~~~~~ 676 (733)
......|+. +..+.. ...+|.. ..++-. ++.+++++|+.|.+|++| |+|+++
T Consensus 215 --~~~~~~~~~~~~~g~~p~~~~~~~~~vP~~~~~~~~~w~~~f~~~~~~~g~~V~~~~~~~~~~~~~~~d~~~------ 286 (309)
T cd08613 215 --KDCLIEYLALGWTGYVPDSCRNTTLLIPLNYAPWLWGWPNRFLARMEAAGTRVILVGPYTGGEFSEGFDTPE------ 286 (309)
T ss_pred --HHHHHHHHhhcccccCCccccCCeEecCccccceEEeCCHHHHHHHHHcCCeEEEEecccCCcccCCCCCHH------
Confidence 011111111 111111 0111221 123333 688999999999999999 777776
Q ss_pred cCCChHHHHHHHHhhcCcCEEEeCChHHH
Q 004721 677 FFSDPTVEINTYYEGAGIDGVITEFPMTA 705 (733)
Q Consensus 677 ~~~d~~~e~~~~l~~~GVdgIiTD~P~~~ 705 (733)
+|.+++ +.|+|||+||+|+.+
T Consensus 287 -------~~~~l~-~~~~~gi~T~r~~~l 307 (309)
T cd08613 287 -------DLKRLP-EGFTGYIWTNKIEAL 307 (309)
T ss_pred -------HHHHHH-hhCCCeEEeCCHhhc
Confidence 899997 999999999999875
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial homologs of mammalian GDE4, a transmembrane protein whose cellular function has not been elucidated yet. |
| >PF03009 GDPD: Glycerophosphoryl diester phosphodiesterase family; InterPro: IPR004129 Glycerophosphoryl diester phosphodiesterases display broad specificity for glycerophosphodiesters; glycerophosphocholine, glycerophosphoethanolamine, glycerophosphoglycerol, and bis(glycerophosphoglycerol) all of which are are hydrolysed by this enzyme | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=315.63 Aligned_cols=244 Identities=25% Similarity=0.374 Sum_probs=161.6
Q ss_pred cCCCCCCCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeeccccccccccCCCcCCCcccccccccccCcccccccC
Q 004721 413 KNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIFSFSLI 492 (733)
Q Consensus 413 HRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L~rtt~v~~~~~~~r~~~~~~~~~~~g~~i~d~T 492 (733)
|||+++.+||||++||+.|++.|+++||+|||+||||+|||+||.+|+|+|+ +.+ .|.++|
T Consensus 1 HRG~~~~~pENTl~af~~A~~~G~~~iE~Dv~lTkDg~~Vv~HD~~l~r~~~------------------~~~-~i~~~t 61 (256)
T PF03009_consen 1 HRGASGNAPENTLAAFRAAIELGADGIELDVQLTKDGVPVVFHDDTLDRTTG------------------GDG-PISDLT 61 (256)
T ss_dssp TTTTTTTSSTTSHHHHHHHHHTTSSEEEEEEEE-TTS-EEE-SSSBSTTTSS------------------TES-BGGGS-
T ss_pred CCCCCCCChhhHHHHHHHHHHhCCCeEcccccccCCceeEeccCCeeeeecC------------------CCc-eeccCC
Confidence 9999999999999999999999999999999999999999999999999999 555 799999
Q ss_pred HHHHhccC-ccccCCCccccccCCcCCCCCccccCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCCcHHHHHHHHHHH
Q 004721 493 WDEIQTLI-PQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEALGN 571 (733)
Q Consensus 493 ~~EL~~L~-~~~~~~~~~~~~~~~~~~~g~~~IptLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~v~~~l~~ 571 (733)
|+||++++ .+.+.. ..++...+.+.++||||+|+|+++... + ..+.+++|............+.+.++..+..
T Consensus 62 ~~el~~l~~~~~~~~----~~~~~~~~~~~~~i~tl~e~l~~~~~~-~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (256)
T PF03009_consen 62 YAELKKLRTLGSKNS----PPFRGQRIPGKQKIPTLEEVLELCAKV-K-LNLEIKIKSKDEIKDPEFLKIVKDIVESVSD 135 (256)
T ss_dssp HHHHTTSBESSTTTT----CGGTTTTSCTCB--EBHHHHHHHHHTT-T-SEEEEEEEECTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhCcccccCCc----ccccccceecccccCcHHHHHHhhhhc-c-ceeEEEEeecccccchhhccccccccccccc
Confidence 99999999 432210 012223333346799999999995554 2 2577777733211100000233444444444
Q ss_pred cC------CCCCCCceEEEEeCCHHHHHHHHhc-cCceEEEEeecccchhhhHHHHHHHHHHhHhcCCCcccccCCcccc
Q 004721 572 AG------YNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNSAFI 644 (733)
Q Consensus 572 ~~------~~~~~~~~vii~Sfd~~~L~~lk~~-p~~~~~~l~~~~~~~~~~~~l~~i~~~a~~i~~~~~~i~~~~~~~l 644 (733)
.. .. .+++++||++..+..+++. |.+++++++.................+ +... .+......+.
T Consensus 136 ~~~~~~~~~~----~~i~~~sf~~~~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~~~~ 206 (256)
T PF03009_consen 136 ILKNSKQALS----RRIIISSFDPEALKQLKQRAPRYPVGFLFEQDDEAPADISLFELYKF---VKCP--GFLASVWNYA 206 (256)
T ss_dssp CHHHHHHHHC----TSEEEEESCHHHHHHHHHHCTTSEEEEEESSCHHHHHH-CCHHHHHH---HTTT--EEEEEHGGGG
T ss_pred cccccccccc----cccccccCcHHHHHHHHhcCCCceEEEEeccCccccccchhhHHHHh---hccc--cccccccccc
Confidence 43 33 6999999999999999999 999999998653211100000011111 1111 1111000111
Q ss_pred --ccchHHHHHHHHCCCcEEEEecCCc--ccccccccCCChHHHHHHHHhhcCcCEEEeCChHH
Q 004721 645 --TSATDIVQRLQSFKLPVYVETFSNE--FVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPMT 704 (733)
Q Consensus 645 --~~~~~~v~~~~~~Gl~v~~wTvn~~--~~~~~~~~~~d~~~e~~~~l~~~GVdgIiTD~P~~ 704 (733)
..++.+++.+|++|+.|++||+|++ . ++.+++ ++||||||||+|++
T Consensus 207 ~~~~~~~~v~~~~~~g~~v~~wtvn~~~~~-------------~~~~l~-~~gvdgIiTD~P~~ 256 (256)
T PF03009_consen 207 DRLGNPRLVQEAHKAGLKVYVWTVNDPDVE-------------DMKRLL-DLGVDGIITDFPDT 256 (256)
T ss_dssp HHCEBHHHHHHHHHTT-EEEEBSB-SHSHH-------------HHHHHH-HHT-SEEEES-HHH
T ss_pred cccccHHHHHHHHHCCCEEEEEecCCcHHH-------------HHHHHH-hCCCCEEEEcCCCC
Confidence 1146799999999999999999999 6 788886 99999999999985
|
; GO: 0008889 glycerophosphodiester phosphodiesterase activity, 0006071 glycerol metabolic process; PDB: 3I10_A 2P76_H 2OOG_F 3KS6_D 3KS5_A 2PZ0_B 1YDY_B 1T8Q_A 1O1Z_A 3L12_B .... |
| >PF03009 GDPD: Glycerophosphoryl diester phosphodiesterase family; InterPro: IPR004129 Glycerophosphoryl diester phosphodiesterases display broad specificity for glycerophosphodiesters; glycerophosphocholine, glycerophosphoethanolamine, glycerophosphoglycerol, and bis(glycerophosphoglycerol) all of which are are hydrolysed by this enzyme | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=307.51 Aligned_cols=238 Identities=24% Similarity=0.281 Sum_probs=154.1
Q ss_pred eCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCCccccCccccccccccccccCCCCCCcccccc
Q 004721 97 RGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPGWFSID 176 (733)
Q Consensus 97 HRG~~~~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l~rtt~~~~~~~~~~~~~~~~g~~~~g~~v~d 176 (733)
|||+++.+||||++||+.|++.|++ +||+|||+||||++||+||.+|+|+|++.+ .|.+
T Consensus 1 HRG~~~~~pENTl~af~~A~~~G~~--~iE~Dv~lTkDg~~Vv~HD~~l~r~~~~~~-------------------~i~~ 59 (256)
T PF03009_consen 1 HRGASGNAPENTLAAFRAAIELGAD--GIELDVQLTKDGVPVVFHDDTLDRTTGGDG-------------------PISD 59 (256)
T ss_dssp TTTTTTTSSTTSHHHHHHHHHTTSS--EEEEEEEE-TTS-EEE-SSSBSTTTSSTES-------------------BGGG
T ss_pred CCCCCCCChhhHHHHHHHHHHhCCC--eEcccccccCCceeEeccCCeeeeecCCCc-------------------eecc
Confidence 9999999999999999999999999 999999999999999999999999999876 7999
Q ss_pred CCHHhhcccc-ccccc--cCCCCCCCCCCcccccHHHHHHhhCC--CceEeeccCchh-hhhcCCcHHHHHHHHHhhcC-
Q 004721 177 YTLNDLSNII-LNQGV--YSRTDKFDGNGFQILTVQDMARQIKP--PGLWLNIQHDAF-YAQHNLSMRSFVLSVSRSVV- 249 (733)
Q Consensus 177 ~T~~eL~~l~-~~~~~--~~~~~~~~g~~~~iptL~e~l~~~~~--~~l~iEiK~~~~-~~~~~~~~~~~v~~~l~~~~- 249 (733)
+||+||++++ ++.+. +.+...+++ .++||||+|+|+++.. ..+.+++|.... .......+...++..+....
T Consensus 60 ~t~~el~~l~~~~~~~~~~~~~~~~~~-~~~i~tl~e~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (256)
T PF03009_consen 60 LTYAELKKLRTLGSKNSPPFRGQRIPG-KQKIPTLEEVLELCAKVKLNLEIKIKSKDEIKDPEFLKIVKDIVESVSDILK 138 (256)
T ss_dssp S-HHHHTTSBESSTTTTCGGTTTTSCT-CB--EBHHHHHHHHHTTTSEEEEEEEECTTSHHHHHHHHHHHHHHHHHHCHH
T ss_pred CCHHHHhhCcccccCCcccccccceec-ccccCcHHHHHHhhhhccceeEEEEeecccccchhhcccccccccccccccc
Confidence 9999999999 54332 223344444 4689999999999544 445555552211 11100012333333333332
Q ss_pred --------CceeccCCHHHHHHHHHhcCCCcccchhhhcCCCccCCCCCcchhH--HHhhHHHHHhhcccccCCcccccc
Q 004721 250 --------VNYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGS--LLKNLTFIKTFASGILVPKDYIWP 319 (733)
Q Consensus 250 --------~~~i~SF~~~~l~~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~l~~~~~~a~~i~~~~~~i~~ 319 (733)
.++++||++..++.+++..| ..+++++...... ...+ .......+. ...+.........
T Consensus 139 ~~~~~~~~~i~~~sf~~~~l~~l~~~~~--~~~~~~l~~~~~~-------~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 207 (256)
T PF03009_consen 139 NSKQALSRRIIISSFDPEALKQLKQRAP--RYPVGFLFEQDDE-------APADISLFELYKFVK--CPGFLASVWNYAD 207 (256)
T ss_dssp HHHHHHCTSEEEEESCHHHHHHHHHHCT--TSEEEEEESSCHH-------HHHH-CCHHHHHHHT--TTEEEEEHGGGGH
T ss_pred ccccccccccccccCcHHHHHHHHhcCC--CceEEEEeccCcc-------ccccchhhHHHHhhc--ccccccccccccc
Confidence 35899999999999999998 5677753322110 0111 000111111 1111111111100
Q ss_pred CCCccCCCCChHHHHHHHHcCCeEEEeecCCCCCcccCCCCChHHHHHHHHhcCCcccceEEecCCC
Q 004721 320 VDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPL 386 (733)
Q Consensus 320 ~~~~~~~~~~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~~~~~l~~~G~~~VDgIiTD~P~ 386 (733)
...++++|+.+|++|+.|++||||++ +.+++++++++| |||||||+|+
T Consensus 208 ------~~~~~~~v~~~~~~g~~v~~wtvn~~----------~~~~~~~l~~~g---vdgIiTD~P~ 255 (256)
T PF03009_consen 208 ------RLGNPRLVQEAHKAGLKVYVWTVNDP----------DVEDMKRLLDLG---VDGIITDFPD 255 (256)
T ss_dssp ------HCEBHHHHHHHHHTT-EEEEBSB-SH----------SHHHHHHHHHHT----SEEEES-HH
T ss_pred ------ccccHHHHHHHHHCCCEEEEEecCCc----------HHHHHHHHHhCC---CCEEEEcCCC
Confidence 01136799999999999999999863 137899999999 9999999996
|
; GO: 0008889 glycerophosphodiester phosphodiesterase activity, 0006071 glycerol metabolic process; PDB: 3I10_A 2P76_H 2OOG_F 3KS6_D 3KS5_A 2PZ0_B 1YDY_B 1T8Q_A 1O1Z_A 3L12_B .... |
| >cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-33 Score=277.12 Aligned_cols=188 Identities=27% Similarity=0.380 Sum_probs=153.9
Q ss_pred EEecCCCCCCCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeeccccccccccCCCcCCCcccccccccccCccccc
Q 004721 410 VISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIFSF 489 (733)
Q Consensus 410 iIaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L~rtt~v~~~~~~~r~~~~~~~~~~~g~~i~ 489 (733)
||||||+++.+||||++||+.|++.|+++||+|||+||||++||+||
T Consensus 1 i~aHRG~~~~~pent~~a~~~a~~~g~~~iE~Dv~~tkDg~~vv~Hd--------------------------------- 47 (189)
T cd08556 1 IIAHRGASGEAPENTLAAFRKALEAGADGVELDVQLTKDGVLVVIHD--------------------------------- 47 (189)
T ss_pred CEeCCCCCCCCCchHHHHHHHHHHcCCCEEEEEeeEcCCCCEEEEcC---------------------------------
Confidence 68999999999999999999999999999999999999999999998
Q ss_pred ccCHHHHhccCccccCCCccccccCCcCCCCCccccCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCCcHHHHHHHHH
Q 004721 490 SLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEAL 569 (733)
Q Consensus 490 d~T~~EL~~L~~~~~~~~~~~~~~~~~~~~g~~~IptLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~v~~~l 569 (733)
+|||+|+|+.+++. ..++||+|.+.. ...+++.+++++
T Consensus 48 ----------------------------------i~tL~e~l~~~~~~---~~i~leiK~~~~-----~~~~~~~l~~~i 85 (189)
T cd08556 48 ----------------------------------IPTLEEVLELVKGG---VGLNIELKEPTR-----YPGLEAKVAELL 85 (189)
T ss_pred ----------------------------------CCCHHHHHHhcccC---cEEEEEECCCCC-----chhHHHHHHHHH
Confidence 48999999999974 489999998642 135788999999
Q ss_pred HHcCCCCCCCceEEEEeCCHHHHHHHHhc-cCceEEEEeecccchhhhHHHHHHHHHHhHhcCCCcccccCCccccccch
Q 004721 570 GNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNSAFITSAT 648 (733)
Q Consensus 570 ~~~~~~~~~~~~vii~Sfd~~~L~~lk~~-p~~~~~~l~~~~~~~~~~~~l~~i~~~a~~i~~~~~~i~~~~~~~l~~~~ 648 (733)
+++++. ++++++||++..+.++++. |++++++++........ .. ..+...++ ..+.+. +....+
T Consensus 86 ~~~~~~----~~v~i~s~~~~~l~~~~~~~p~~~~~~~~~~~~~~~~----~~--~~~~~~~~--~~v~~~---~~~~~~ 150 (189)
T cd08556 86 REYGLE----ERVVVSSFDHEALRALKELDPEVPTGLLVDKPPLDPL----LA--ELARALGA--DAVNPH---YKLLTP 150 (189)
T ss_pred HHcCCc----CCEEEEeCCHHHHHHHHHhCCCCcEEEEeecCcccch----hh--hHHHhcCC--eEEccC---hhhCCH
Confidence 999977 7999999999999999999 99999999875322110 00 01111111 122221 223468
Q ss_pred HHHHHHHHCCCcEEEEecCCcccccccccCCChHHHHHHHHhhcCcCEEEeCC
Q 004721 649 DIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEF 701 (733)
Q Consensus 649 ~~v~~~~~~Gl~v~~wTvn~~~~~~~~~~~~d~~~e~~~~l~~~GVdgIiTD~ 701 (733)
.+++.+|++|++|++||+|+.+ ++..++ ++|||||+||+
T Consensus 151 ~~i~~~~~~g~~v~~wtvn~~~-------------~~~~~~-~~GVdgI~TD~ 189 (189)
T cd08556 151 ELVRAAHAAGLKVYVWTVNDPE-------------DARRLL-ALGVDGIITDD 189 (189)
T ss_pred HHHHHHHHcCCEEEEEcCCCHH-------------HHHHHH-HCCCCEEecCC
Confidence 9999999999999999999886 788886 99999999996
|
The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho |
| >cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.1e-31 Score=266.79 Aligned_cols=185 Identities=21% Similarity=0.173 Sum_probs=147.6
Q ss_pred EEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCCccccCccccccccccccccCCCCCCccc
Q 004721 94 VVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPGWF 173 (733)
Q Consensus 94 viaHRG~~~~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l~rtt~~~~~~~~~~~~~~~~g~~~~g~~ 173 (733)
||||||+++.+||||++||+.|++.|+| +||+|||+||||++||+||
T Consensus 1 i~aHRG~~~~~pent~~a~~~a~~~g~~--~iE~Dv~~tkDg~~vv~Hd------------------------------- 47 (189)
T cd08556 1 IIAHRGASGEAPENTLAAFRKALEAGAD--GVELDVQLTKDGVLVVIHD------------------------------- 47 (189)
T ss_pred CEeCCCCCCCCCchHHHHHHHHHHcCCC--EEEEEeeEcCCCCEEEEcC-------------------------------
Confidence 5899999999999999999999999999 9999999999999999999
Q ss_pred cccCCHHhhccccccccccCCCCCCCCCCcccccHHHHHHhhC-CCceEeeccCchhhhhcCCcHHHHHHHHHhhcCC--
Q 004721 174 SIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIK-PPGLWLNIQHDAFYAQHNLSMRSFVLSVSRSVVV-- 250 (733)
Q Consensus 174 v~d~T~~eL~~l~~~~~~~~~~~~~~g~~~~iptL~e~l~~~~-~~~l~iEiK~~~~~~~~~~~~~~~v~~~l~~~~~-- 250 (733)
+|||+|+|+.++ +..+++|+|.+.. ...+.+.+++++++++.
T Consensus 48 -------------------------------i~tL~e~l~~~~~~~~i~leiK~~~~----~~~~~~~l~~~i~~~~~~~ 92 (189)
T cd08556 48 -------------------------------IPTLEEVLELVKGGVGLNIELKEPTR----YPGLEAKVAELLREYGLEE 92 (189)
T ss_pred -------------------------------CCCHHHHHHhcccCcEEEEEECCCCC----chhHHHHHHHHHHHcCCcC
Confidence 269999999998 4789999997543 22578889999999864
Q ss_pred -ceeccCCHHHHHHHHHhcCCCcccchhhhcCCCccCCCCCcchhHHHhhHHHHHhhcccccCCccccccCCCccCCCCC
Q 004721 251 -NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTFASGILVPKDYIWPVDESLYLLPH 329 (733)
Q Consensus 251 -~~i~SF~~~~l~~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~i~~~~~~i~~~~~~~~~~~~ 329 (733)
++++||++..++++++..| +.+++++...... . .... .......+.++++++.. ..
T Consensus 93 ~v~i~s~~~~~l~~~~~~~p--~~~~~~~~~~~~~-~------~~~~---~~~~~~~~~~v~~~~~~-----------~~ 149 (189)
T cd08556 93 RVVVSSFDHEALRALKELDP--EVPTGLLVDKPPL-D------PLLA---ELARALGADAVNPHYKL-----------LT 149 (189)
T ss_pred CEEEEeCCHHHHHHHHHhCC--CCcEEEEeecCcc-c------chhh---hHHHhcCCeEEccChhh-----------CC
Confidence 5999999999999999998 6777763322111 0 0000 00111124445554332 24
Q ss_pred hHHHHHHHHcCCeEEEeecCCCCCcccCCCCChHHHHHHHHhcCCcccceEEecC
Q 004721 330 TTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDF 384 (733)
Q Consensus 330 ~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~~~~~l~~~G~~~VDgIiTD~ 384 (733)
+.+++.+|++|++|++||+|+. +++++++++| ||||+||+
T Consensus 150 ~~~i~~~~~~g~~v~~wtvn~~------------~~~~~~~~~G---VdgI~TD~ 189 (189)
T cd08556 150 PELVRAAHAAGLKVYVWTVNDP------------EDARRLLALG---VDGIITDD 189 (189)
T ss_pred HHHHHHHHHcCCEEEEEcCCCH------------HHHHHHHHCC---CCEEecCC
Confidence 7899999999999999999864 8999999999 99999996
|
The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho |
| >cd08555 PI-PLCc_GDPD_SF Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-31 Score=263.30 Aligned_cols=170 Identities=20% Similarity=0.191 Sum_probs=137.4
Q ss_pred EEecCCCCCCCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeeccccccccccCCCcCCCcccccccccccCccccc
Q 004721 410 VISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIFSF 489 (733)
Q Consensus 410 iIaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L~rtt~v~~~~~~~r~~~~~~~~~~~g~~i~ 489 (733)
||||||+++.+||||++||+.|++.|+++||+|||+|+||++||+||.+++|+|.
T Consensus 1 iiaHRG~~~~~peNT~~af~~a~~~G~~~iE~DV~lt~Dg~lvv~HD~~~~r~~~------------------------- 55 (179)
T cd08555 1 VLSHRGYSQNGQENTLEAFYRALDAGARGLELDVRLTKDGELVVYHGPTLDRTTA------------------------- 55 (179)
T ss_pred CEecCCCCCCCCccHHHHHHHHHHcCCCEEEEEEeEcCCCeEEEECCCccccccC-------------------------
Confidence 5899999999999999999999999999999999999999999999999988542
Q ss_pred ccCHHHHhccCccccCCCccccccCCcCCCCCccccCHHHHHHHHHhc-----CCCceEEEEecchhHHHhhcCCcHHHH
Q 004721 490 SLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNA-----NSLSGVLISIENAVYLAEKQGMSVTNS 564 (733)
Q Consensus 490 d~T~~EL~~L~~~~~~~~~~~~~~~~~~~~g~~~IptLeEvL~~~~~~-----~~~~~l~iEiK~~~~~~~~~~~~~~~~ 564 (733)
++++|||+|+|++++++ .. +.++||+|.+... ...+.++
T Consensus 56 -------------------------------~~~~ptl~evl~~~~~~~~~~~~~-~~l~iEiK~~~~~----~~~~~~~ 99 (179)
T cd08555 56 -------------------------------GILPPTLEEVLELIADYLKNPDYT-IILSLEIKQDSPE----YDEFLAK 99 (179)
T ss_pred -------------------------------CCCCCCHHHHHHHHHhhhhcCCCc-eEEEEEeCCCCCc----chHHHHH
Confidence 26799999999999873 12 3799999976421 2357788
Q ss_pred HHHHHHHcC---CCCCCCceEEEEeCCHHHHHHHHhccCceEEEEeecccchhhhHHHHHHHHHHhHhcCCCcccccCCc
Q 004721 565 VMEALGNAG---YNKQTALKVMIQSTDSSVLMKLREKTSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNS 641 (733)
Q Consensus 565 v~~~l~~~~---~~~~~~~~vii~Sfd~~~L~~lk~~p~~~~~~l~~~~~~~~~~~~l~~i~~~a~~i~~~~~~i~~~~~ 641 (733)
+++.+++++ +. ++|+++||. .. . +....+..
T Consensus 100 ~~~~~~~~~~~~~~----~~v~i~sf~--------~~---------~----------------------~~~~~~~~--- 133 (179)
T cd08555 100 VLKELRVYFDYDLR----GKVVLSSFN--------AL---------G----------------------VDYYNFSS--- 133 (179)
T ss_pred HHHHHHHcCCcccC----CCEEEEeec--------cc---------C----------------------CChhcccc---
Confidence 999999998 65 799999990 00 0 00000000
Q ss_pred cccccchHHHHHHHHCCCcEEEEecCC-cccccccccCCChHHHHHHHHhhcCcCEEEeCC
Q 004721 642 AFITSATDIVQRLQSFKLPVYVETFSN-EFVSQAWDFFSDPTVEINTYYEGAGIDGVITEF 701 (733)
Q Consensus 642 ~~l~~~~~~v~~~~~~Gl~v~~wTvn~-~~~~~~~~~~~d~~~e~~~~l~~~GVdgIiTD~ 701 (733)
....++++++.+|++|++|++||+|+ +. ++.+++ ++|||||+||+
T Consensus 134 -~~~~~~~~v~~~~~~g~~v~~wtvn~~~~-------------~~~~l~-~~Gvd~i~TD~ 179 (179)
T cd08555 134 -KLIKDTELIASANKLGLLSRIWTVNDNNE-------------IINKFL-NLGVDGLITDF 179 (179)
T ss_pred -hhhcCHHHHHHHHHCCCEEEEEeeCChHH-------------HHHHHH-HcCCCEEeCCC
Confidence 11236899999999999999999998 76 788886 99999999996
|
The PI-PLC-like phosphodiesterases superfamily represents the catalytic domains of bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13), eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11), glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria, as well as their uncharacterized homologs found in organisms ranging from bacteria and archaea to metazoans, plants, and fungi. PI-PLCs are ubiquitous enzymes hydrolyzing the membrane lipid phosphoinositides to yield two important second messengers, inositol phosphates and diacylglycerol (DAG). GP-GDEs play essential roles in glycerol metabolism and catalyze the hydrolysis of glycerophosph |
| >cd08555 PI-PLCc_GDPD_SF Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.6e-31 Score=257.79 Aligned_cols=165 Identities=25% Similarity=0.230 Sum_probs=131.8
Q ss_pred EEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCCccccCccccccccccccccCCCCCCccc
Q 004721 94 VVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPGWF 173 (733)
Q Consensus 94 viaHRG~~~~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l~rtt~~~~~~~~~~~~~~~~g~~~~g~~ 173 (733)
||||||+++.+||||++||+.|++.|++ +||+|||+|+||++||+||.+++|+|.
T Consensus 1 iiaHRG~~~~~peNT~~af~~a~~~G~~--~iE~DV~lt~Dg~lvv~HD~~~~r~~~----------------------- 55 (179)
T cd08555 1 VLSHRGYSQNGQENTLEAFYRALDAGAR--GLELDVRLTKDGELVVYHGPTLDRTTA----------------------- 55 (179)
T ss_pred CEecCCCCCCCCccHHHHHHHHHHcCCC--EEEEEEeEcCCCeEEEECCCccccccC-----------------------
Confidence 5899999999999999999999999999 999999999999999999999999861
Q ss_pred cccCCHHhhccccccccccCCCCCCCCCCcccccHHHHHHhhCC--------CceEeeccCchhhhhcCCcHHHHHHHHH
Q 004721 174 SIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKP--------PGLWLNIQHDAFYAQHNLSMRSFVLSVS 245 (733)
Q Consensus 174 v~d~T~~eL~~l~~~~~~~~~~~~~~g~~~~iptL~e~l~~~~~--------~~l~iEiK~~~~~~~~~~~~~~~v~~~l 245 (733)
++++|||+|+|+++++ +.++||+|.+.. ....+++.+++.+
T Consensus 56 ----------------------------~~~~ptl~evl~~~~~~~~~~~~~~~l~iEiK~~~~---~~~~~~~~~~~~~ 104 (179)
T cd08555 56 ----------------------------GILPPTLEEVLELIADYLKNPDYTIILSLEIKQDSP---EYDEFLAKVLKEL 104 (179)
T ss_pred ----------------------------CCCCCCHHHHHHHHHhhhhcCCCceEEEEEeCCCCC---cchHHHHHHHHHH
Confidence 2589999999999864 579999996542 1225778889999
Q ss_pred hhcC---C---ceeccCCHHHHHHHHHhcCCCcccchhhhcCCCccCCCCCcchhHHHhhHHHHHhhcccccCCcccccc
Q 004721 246 RSVV---V---NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTFASGILVPKDYIWP 319 (733)
Q Consensus 246 ~~~~---~---~~i~SF~~~~l~~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~i~~~~~~i~~ 319 (733)
++++ . ++++||. ...+ .+ . . +.. .
T Consensus 105 ~~~~~~~~~~~v~i~sf~--------~~~~------~~--~-------------------------~---~~~-~----- 134 (179)
T cd08555 105 RVYFDYDLRGKVVLSSFN--------ALGV------DY--Y-------------------------N---FSS-K----- 134 (179)
T ss_pred HHcCCcccCCCEEEEeec--------ccCC------Ch--h-------------------------c---ccc-h-----
Confidence 9886 3 4899990 0000 00 0 0 000 0
Q ss_pred CCCccCCCCChHHHHHHHHcCCeEEEeecCCCCCcccCCCCChHHHHHHHHhcCCcccceEEecC
Q 004721 320 VDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDF 384 (733)
Q Consensus 320 ~~~~~~~~~~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~~~~~l~~~G~~~VDgIiTD~ 384 (733)
...++++|+++|++|++|++||||+. .++|++++++| ||||+||+
T Consensus 135 ------~~~~~~~v~~~~~~g~~v~~wtvn~~-----------~~~~~~l~~~G---vd~i~TD~ 179 (179)
T cd08555 135 ------LIKDTELIASANKLGLLSRIWTVNDN-----------NEIINKFLNLG---VDGLITDF 179 (179)
T ss_pred ------hhcCHHHHHHHHHCCCEEEEEeeCCh-----------HHHHHHHHHcC---CCEEeCCC
Confidence 01247899999999999999999861 38999999999 99999996
|
The PI-PLC-like phosphodiesterases superfamily represents the catalytic domains of bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13), eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11), glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria, as well as their uncharacterized homologs found in organisms ranging from bacteria and archaea to metazoans, plants, and fungi. PI-PLCs are ubiquitous enzymes hydrolyzing the membrane lipid phosphoinositides to yield two important second messengers, inositol phosphates and diacylglycerol (DAG). GP-GDEs play essential roles in glycerol metabolism and catalyze the hydrolysis of glycerophosph |
| >KOG2258 consensus Glycerophosphoryl diester phosphodiesterase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.1e-28 Score=259.26 Aligned_cols=332 Identities=38% Similarity=0.546 Sum_probs=252.7
Q ss_pred HHHHcCCeEEEeecCCCCCcccCCCCChHHHHHHHHhcCCcccceEEecCCCCccccchhccccCCCCCcCCcceEEecC
Q 004721 335 DAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPSAAVDCFAHLGKNASKSANLLVISKN 414 (733)
Q Consensus 335 ~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~~~~~l~~~G~~~VDgIiTD~P~~~~~~l~~~~~~~~~~~~~~~~~iIaHR 414 (733)
.+|..|+++++|.+.+.-.+++.+..+...++..++..+...++++..|+|-.....+.++.+.+ ...||+||
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~i~~~r 75 (341)
T KOG2258|consen 3 DAHIAGLEVFASGFANDFSLAFNYSYALILVTLAFLLNVLFSLLFLFSDPPPTASAHKNLFLHIG-------GWLIIAHR 75 (341)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHhhhhhhhHhhhcCCccchhhhHHHhcCCC-------CceeEecc
Confidence 45666777777766655455566665655666666777777799999999999888888887643 57899999
Q ss_pred CCCCCCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeeccccccccccCCCcCCCcccccccccccCcccccccCHH
Q 004721 415 GASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIFSFSLIWD 494 (733)
Q Consensus 415 G~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L~rtt~v~~~~~~~r~~~~~~~~~~~g~~i~d~T~~ 494 (733)
|+++.+||||++||++|++.|+|.||+||++|+||++|++||.+..|++++.. .+.++||.
T Consensus 76 ga~g~~penT~~A~~~a~~~Gad~ie~dV~~TsDg~~v~l~d~~~~r~~~v~~-------------------~~~~lt~~ 136 (341)
T KOG2258|consen 76 GASGDAPENTLAAYKKAIADGADLIELDVQMTSDGVPVILHDSTTVRVTGVPE-------------------IVFDLTWM 136 (341)
T ss_pred CCCCCCCcccHHHHHHHHHcCCcEEEeccccCCCCceEEeecCcceeeeccee-------------------eeccCCHH
Confidence 99999999999999999999999999999999999999999999999999543 48999999
Q ss_pred HHhccCccccCCCccccccCCcCCCCCccccCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCCcHHHHHHHHHHHcCC
Q 004721 495 EIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEALGNAGY 574 (733)
Q Consensus 495 EL~~L~~~~~~~~~~~~~~~~~~~~g~~~IptLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~v~~~l~~~~~ 574 (733)
|++++......++ ..+.+. .+++|+|+|....+-++ +. .+.-|.| + .+.+++++.+++.+.
T Consensus 137 e~~~l~~~~~~~~------~~~~~~-~~~~~~l~e~v~~~~~~-n~-~~l~d~~---~-------~~~~~vl~~l~~~~~ 197 (341)
T KOG2258|consen 137 ELRKLGPKIENPF------AGPIIT-LEKLLTLAEAVASVVGN-NV-AMLNDVK---L-------LVVDKVLEALKNATS 197 (341)
T ss_pred HHhccCccccCcc------cccccc-hhhhccHHHHHHHHHcC-Ch-hhhhhhh---h-------hhHHHHHHHHHHHhc
Confidence 9999998765442 112222 37899999999998886 32 4555555 1 356778888888766
Q ss_pred CCCCCceEEEEeCCHHHHHHHHhc-cCceEEEEeecccchhhhHHHHHHHHHHhHhcCCCcccccCCcccc-ccchHHHH
Q 004721 575 NKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNSAFI-TSATDIVQ 652 (733)
Q Consensus 575 ~~~~~~~vii~Sfd~~~L~~lk~~-p~~~~~~l~~~~~~~~~~~~l~~i~~~a~~i~~~~~~i~~~~~~~l-~~~~~~v~ 652 (733)
..+..+++++|||++.++.++++. |.+.++......+ ....+.+++++..+.+++..+.+...... ...++++.
T Consensus 198 ~~~~~~kv~v~s~~~~~l~~~~~~~~~~~i~~~~~~~~----ls~~~dik~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 273 (341)
T KOG2258|consen 198 DFSLYDKVLVQSFNPIVLYRLKKLDPFILIGDTWRFTF----LSGIEDIKKRAFAVVSSKLAIFPVSDSLVLAITKNVVA 273 (341)
T ss_pred CCCccceEEEEecCcHHHHHhccCCceEEecceecchh----hccchhhhcccceeeechHHHHHHHHHHhhhhhcceee
Confidence 654447999999999999999998 7755554443321 11133555666666665555554422222 22346888
Q ss_pred HHHHCCCcEEEEecCCcccccccccCCChHHHHHHHHhhcCcCEEEeCChHHHHHHHHhhcccc
Q 004721 653 RLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPMTAARYRSKLVRKQ 716 (733)
Q Consensus 653 ~~~~~Gl~v~~wTvn~~~~~~~~~~~~d~~~e~~~~l~~~GVdgIiTD~P~~~~~~l~~~~~~~ 716 (733)
..++.++.|+++..+++ .-++.+|..++.-++..+..+.|++|..||++-.+..+.+..+...
T Consensus 274 ~~~~~~~~v~~~~~~~e-~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 336 (341)
T KOG2258|consen 274 PLQKLNLVVYVEVFNNE-VVLAVDFSAAPTIELAGWITNVGIDGYITDFHLTAPRLTDNPCEGL 336 (341)
T ss_pred ehhcCCcEEEEEEeecc-ceeeccccccCceEeeeeeccccccCceeeccchhhHhhccccccc
Confidence 89999999999999999 6788899998887777777889999999999999988887765443
|
|
| >cd08578 GDPD_NUC-2_fungi Putative glycerophosphodiester phosphodiesterase domain of ankyrin repeat protein NUC-2 and similar proteins | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-25 Score=235.32 Aligned_cols=237 Identities=14% Similarity=0.145 Sum_probs=171.6
Q ss_pred hHHHHHHHHHCCCCeeecCceeecCCeEEEeeccccccccccCCCcCCCcccccccccccCcccccccCHHHHhccCccc
Q 004721 424 TNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIFSFSLIWDEIQTLIPQI 503 (733)
Q Consensus 424 Tl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L~rtt~v~~~~~~~r~~~~~~~~~~~g~~i~d~T~~EL~~L~~~~ 503 (733)
+..+|..|.++|+|+||+|||+||||+|||+||.++.++ | +.+ .|.++||+||+.++.+.
T Consensus 17 ~~~sfvtAsslgad~VE~DVqLTkDgvpVV~HD~~i~~t-~------------------~~~-~V~dlTleqL~~l~~~~ 76 (300)
T cd08578 17 DGNSFVTASSLSGEYLRVKVCVLKDGTPVVAPEWFVPVG-G------------------IKL-LVSDLTAEQLESILDYS 76 (300)
T ss_pred CchhHHHHHHcCCCEEEEEEEECcCCEEEEECCCceEec-C------------------CcE-EeecCcHHHHhccCCcc
Confidence 466899999999999999999999999999999999774 5 444 79999999999999865
Q ss_pred cCCC-ccccc-cCCcCCCCCccccCHHHHHHHHHhcCCCceEEEEecchhHHHhhc----------CCcHHHHHHHHHHH
Q 004721 504 SNPY-FKFKL-FRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQ----------GMSVTNSVMEALGN 571 (733)
Q Consensus 504 ~~~~-~~~~~-~~~~~~~g~~~IptLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~~----------~~~~~~~v~~~l~~ 571 (733)
+... ..... ..-..+. ++++|||+|+|+.++.. ++++||||.|....... -..+++.+++.+-+
T Consensus 77 ~~~~~~~~~~~~~~~~~~-~~~~pTL~evL~~lp~~---iglNIEIK~P~~~e~~~~~~~~~~~~d~N~fvD~IL~~Vf~ 152 (300)
T cd08578 77 LDDLNSEISDMVDLKRLL-SSRVVSLETLLELLPPS---IQLDIQVLFPTAAEIASIPVKGSPLVDLNKFIDTVLLVVFD 152 (300)
T ss_pred cccccccccccchhhhhc-CCcCCCHHHHHHhhccC---CeEEEEECCCChHHhhhccccccchhHHHHHHHHHHHHHHH
Confidence 4211 00000 0001233 47899999999999775 59999999877542111 12478888888876
Q ss_pred cCCCC----CCCceEEEEeCCHHHHHHHHhc-cCceEEEEeecc--------------------------cchhhhHHHH
Q 004721 572 AGYNK----QTALKVMIQSTDSSVLMKLREK-TSYELVYKVKEN--------------------------IRDALNQTIE 620 (733)
Q Consensus 572 ~~~~~----~~~~~vii~Sfd~~~L~~lk~~-p~~~~~~l~~~~--------------------------~~~~~~~~l~ 620 (733)
+.... ...++|+|+||||+++..++.+ |++|+.|++... +.|....+++
T Consensus 153 har~~~~~~~~~R~IiFSSf~pdiC~~L~~KQp~yPV~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~Si~ 232 (300)
T cd08578 153 HARYLRHTPGSTRSIVFSSCNPEVCTILNWKQPNFPVFFAMNGLVRNNDTLSFDTPHHLDSLAVDPQKLNEADPRSRSIK 232 (300)
T ss_pred HhhhhcccCCCCCceEEeeCCHHHHHHHHhcCCCCCEEEEecCCccccccccccccccccccccccccccccCchhhhHH
Confidence 64210 0126999999999999999999 999999998764 2233445677
Q ss_pred HHHHHHhHhcCCCcccccCCccccccchHHHHHHHHCCCcEEEEecCCcccccccccCCChHHHHHHHHhhcCcCEEEeC
Q 004721 621 DIKKFADSVVLSKESVYPLNSAFITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITE 700 (733)
Q Consensus 621 ~i~~~a~~i~~~~~~i~~~~~~~l~~~~~~v~~~~~~Gl~v~~wTvn~~~~~~~~~~~~d~~~e~~~~l~~~GVdgIiTD 700 (733)
++..||...+. ..+.... ..+...|.+|+.++++|+.+++|+-+.+. ........||||++.|
T Consensus 233 ~Av~fA~~~nL--~Giv~~~-~~L~~~P~lV~~ik~~GL~lv~~g~~~~~--------------~~~~~~~~~vnG~~~~ 295 (300)
T cd08578 233 EAVRFAKNNNL--LGLILPY-SLLNIVPQLVESIKSRGLLLIASGEPESL--------------IEVAEAGDGINGVVTE 295 (300)
T ss_pred HHHHHHHHcCC--cEEEecH-HHHhhChHHHHHHHHcCCEEEEECCCCcc--------------ccccccccCCceEEeC
Confidence 77788776544 1222221 33456799999999999999999976432 1112248899999988
Q ss_pred C
Q 004721 701 F 701 (733)
Q Consensus 701 ~ 701 (733)
.
T Consensus 296 ~ 296 (300)
T cd08578 296 D 296 (300)
T ss_pred C
Confidence 5
|
This subfamily corresponds to a putative glycerophosphodiester phosphodiesterase domain (GDPD) present in Neurospora crassa ankyrin repeat protein NUC-2 and its Saccharomyces cerevisiae counterpart, Phosphate system positive regulatory protein PHO81. Some uncharecaterized NUC-2 sequence homologs are also included in this family. NUC-2 plays an important role in the phosphate-regulated signal transduction pathway in Neurospora crassa. It shows high similarity to a cyclin-dependent kinase inhibitory protein PHO81, which is part of the phosphate regulatory cascade in S. cerevisiae. Both NUC-2 and PHO81 have multi-domain architecture, including an SPX N-terminal domain following by several ankyrin repeats and a putative C-terminal GDPD domain with unknown function. Although the putative GDPD domain displays sequence homology to that of bacterial glycerophos |
| >cd08578 GDPD_NUC-2_fungi Putative glycerophosphodiester phosphodiesterase domain of ankyrin repeat protein NUC-2 and similar proteins | Back alignment and domain information |
|---|
Probab=99.90 E-value=3e-23 Score=217.71 Aligned_cols=227 Identities=13% Similarity=0.089 Sum_probs=158.0
Q ss_pred HHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCCccccCccccccccccccccCCCCCCccccccCCHHhhccccc
Q 004721 108 SSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPGWFSIDYTLNDLSNIIL 187 (733)
Q Consensus 108 Tl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l~rtt~~~~~~~~~~~~~~~~g~~~~g~~v~d~T~~eL~~l~~ 187 (733)
+..+|..|.++|+| +||+|||+||||+|||+||.+++|+ ++.+ +|.++||+||++++.
T Consensus 17 ~~~sfvtAsslgad--~VE~DVqLTkDgvpVV~HD~~i~~t-~~~~-------------------~V~dlTleqL~~l~~ 74 (300)
T cd08578 17 DGNSFVTASSLSGE--YLRVKVCVLKDGTPVVAPEWFVPVG-GIKL-------------------LVSDLTAEQLESILD 74 (300)
T ss_pred CchhHHHHHHcCCC--EEEEEEEECcCCEEEEECCCceEec-CCcE-------------------EeecCcHHHHhccCC
Confidence 46799999999999 9999999999999999999999775 5543 799999999999998
Q ss_pred cccccCCC--------CCCCCCCcccccHHHHHHhhC-CCceEeeccCchhhhhcC-----------CcHHHHHHHHHhh
Q 004721 188 NQGVYSRT--------DKFDGNGFQILTVQDMARQIK-PPGLWLNIQHDAFYAQHN-----------LSMRSFVLSVSRS 247 (733)
Q Consensus 188 ~~~~~~~~--------~~~~g~~~~iptL~e~l~~~~-~~~l~iEiK~~~~~~~~~-----------~~~~~~v~~~l~~ 247 (733)
+.++.... ..+. ++++|||+|+|+.+. .++++||||.|...+... -.+++.+++.+-+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~--~~~~pTL~evL~~lp~~iglNIEIK~P~~~e~~~~~~~~~~~~d~N~fvD~IL~~Vf~ 152 (300)
T cd08578 75 YSLDDLNSEISDMVDLKRLL--SSRVVSLETLLELLPPSIQLDIQVLFPTAAEIASIPVKGSPLVDLNKFIDTVLLVVFD 152 (300)
T ss_pred cccccccccccccchhhhhc--CCcCCCHHHHHHhhccCCeEEEEECCCChHHhhhccccccchhHHHHHHHHHHHHHHH
Confidence 77643210 0123 379999999999985 489999999887653211 1245666666655
Q ss_pred cC-----------CceeccCCHHHHHHHHHhcCCCcccchhhhcCCCccC----------------CCCCcchhHHHh-h
Q 004721 248 VV-----------VNYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIE----------------PTTNQTYGSLLK-N 299 (733)
Q Consensus 248 ~~-----------~~~i~SF~~~~l~~l~~~~p~~~~~~~~~l~~~~~~~----------------~~~~~~~~~~~~-~ 299 (733)
+. .++++||++++|..++.+.| ..|+.++..+..... ......|.+... .
T Consensus 153 har~~~~~~~~~R~IiFSSf~pdiC~~L~~KQp--~yPV~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~S 230 (300)
T cd08578 153 HARYLRHTPGSTRSIVFSSCNPEVCTILNWKQP--NFPVFFAMNGLVRNNDTLSFDTPHHLDSLAVDPQKLNEADPRSRS 230 (300)
T ss_pred HhhhhcccCCCCCceEEeeCCHHHHHHHHhcCC--CCCEEEEecCCccccccccccccccccccccccccccccCchhhh
Confidence 42 25999999999999999998 788887443321100 000113444443 4
Q ss_pred HHHHHhhccc-----ccCCccccccCCCccCCCCChHHHHHHHHcCCeEEEeecCCCCCcccCCCCChHHHHHHHHhcCC
Q 004721 300 LTFIKTFASG-----ILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGD 374 (733)
Q Consensus 300 l~~~~~~a~~-----i~~~~~~i~~~~~~~~~~~~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~~~~~l~~~G~ 374 (733)
+++...+|.. +..+... +...|.+|+.++++||.+.+|+-..+ +.-....+.|
T Consensus 231 i~~Av~fA~~~nL~Giv~~~~~---------L~~~P~lV~~ik~~GL~lv~~g~~~~------------~~~~~~~~~~- 288 (300)
T cd08578 231 IKEAVRFAKNNNLLGLILPYSL---------LNIVPQLVESIKSRGLLLIASGEPES------------LIEVAEAGDG- 288 (300)
T ss_pred HHHHHHHHHHcCCcEEEecHHH---------HhhChHHHHHHHHcCCEEEEECCCCc------------cccccccccC-
Confidence 5555555433 2222222 33458999999999999999995421 0111234557
Q ss_pred cccceEEecC
Q 004721 375 FSVDGVLSDF 384 (733)
Q Consensus 375 ~~VDgIiTD~ 384 (733)
|||++.|.
T Consensus 289 --vnG~~~~~ 296 (300)
T cd08578 289 --INGVVTED 296 (300)
T ss_pred --CceEEeCC
Confidence 99999885
|
This subfamily corresponds to a putative glycerophosphodiester phosphodiesterase domain (GDPD) present in Neurospora crassa ankyrin repeat protein NUC-2 and its Saccharomyces cerevisiae counterpart, Phosphate system positive regulatory protein PHO81. Some uncharecaterized NUC-2 sequence homologs are also included in this family. NUC-2 plays an important role in the phosphate-regulated signal transduction pathway in Neurospora crassa. It shows high similarity to a cyclin-dependent kinase inhibitory protein PHO81, which is part of the phosphate regulatory cascade in S. cerevisiae. Both NUC-2 and PHO81 have multi-domain architecture, including an SPX N-terminal domain following by several ankyrin repeats and a putative C-terminal GDPD domain with unknown function. Although the putative GDPD domain displays sequence homology to that of bacterial glycerophos |
| >cd08584 PI-PLCc_GDPD_SF_unchar2 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.2e-21 Score=188.06 Aligned_cols=186 Identities=12% Similarity=0.072 Sum_probs=129.3
Q ss_pred EEecCCCCCCCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeeccccccccccCCCcCCCcccccccccccCccccc
Q 004721 410 VISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIFSF 489 (733)
Q Consensus 410 iIaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L~rtt~v~~~~~~~r~~~~~~~~~~~g~~i~ 489 (733)
|||||| ||++||++|++. |+||+|||+| ||++||+||.+++
T Consensus 1 IiAHRG-------NTl~AF~~A~~~--dgvE~DVr~t-Dg~lVV~HD~~l~----------------------------- 41 (192)
T cd08584 1 IIAHRG-------NTITALKRTFEN--FGVETDIRDY-GGQLVISHDPFVK----------------------------- 41 (192)
T ss_pred CCccch-------HHHHHHHHHHHC--CEEEEEEEee-CCeEEEECCCCCC-----------------------------
Confidence 589999 999999999998 9999999999 9999999997653
Q ss_pred ccCHHHHhccCccccCCCccccccCCcCCCCCccccCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCCcHHHHHHHHH
Q 004721 490 SLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEAL 569 (733)
Q Consensus 490 d~T~~EL~~L~~~~~~~~~~~~~~~~~~~~g~~~IptLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~v~~~l 569 (733)
++|||+|+|+.++.. .++||||.+ .+++++++++
T Consensus 42 ---------------------------------~~PtLeEvL~~~~~~----~l~inIK~~---------~l~~~l~~li 75 (192)
T cd08584 42 ---------------------------------NGELLEDWLKEYNHG----TLILNIKAE---------GLELRLKKLL 75 (192)
T ss_pred ---------------------------------CCCCHHHHHHhcccc----cEEEEECch---------hHHHHHHHHH
Confidence 259999999999765 689999954 3678899999
Q ss_pred HHcCCCCCCCceEEEEeCCHHHHHHHHhc-cCceEEEEeecccchhhhHHHHHHHHHHhHhcCCCcccccCCccccccch
Q 004721 570 GNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNSAFITSAT 648 (733)
Q Consensus 570 ~~~~~~~~~~~~vii~Sfd~~~L~~lk~~-p~~~~~~l~~~~~~~~~~~~l~~i~~~a~~i~~~~~~i~~~~~~~l~~~~ 648 (733)
+++++. ++++++||++.++.+++.- +.+-+.+.-.+. .+..+..+ ..+ ..+|...-...-.+.
T Consensus 76 ~~~~~~----~~vi~ssf~~~~l~~~~~~~~~i~tr~Se~E~----~~~~~~~~-~~~-------~~VW~D~f~~~~~~~ 139 (192)
T cd08584 76 AEYGIT----NYFFLDMSVPDIIKYLENGEKRTATRVSEYEP----IPTALSLY-EKA-------DWVWIDSFTSLWLDN 139 (192)
T ss_pred HhcCCc----ceEEEEcCCHHHHHHHhcCCCeeEEeeccccc----chHHHHhh-ccc-------cEEEEecccccCCCH
Confidence 999998 8999999999999999876 545444332211 11111111 111 223322101112368
Q ss_pred HHHHHHHHCCCcEEEEecCCcccccccccCCChHHHHHHH--H--hhcCcCEEEeCChHH
Q 004721 649 DIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTY--Y--EGAGIDGVITEFPMT 704 (733)
Q Consensus 649 ~~v~~~~~~Gl~v~~wTvn~~~~~~~~~~~~d~~~e~~~~--l--~~~GVdgIiTD~P~~ 704 (733)
+.++...++|+++..=. ++ .+.-|.-.++..+ + .+..-++||||+|..
T Consensus 140 ~~~~~~~~~~~~~c~VS---pE-----Lh~~~~~~~~~~~~~~~~~~~~~~~~CT~~p~~ 191 (192)
T cd08584 140 DLILKLLKAGKKICLVS---PE-----LHGRDHLAEWEAKQYIEFLKENFDALCTKVPDL 191 (192)
T ss_pred HHHHHHHHCCcEEEEEC---HH-----HcCCChHHHHHHHHhhhhccccCeeEeccCccc
Confidence 89999999999987542 22 1222222233321 1 123368999999974
|
This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues. |
| >cd08584 PI-PLCc_GDPD_SF_unchar2 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.7e-20 Score=181.98 Aligned_cols=187 Identities=13% Similarity=0.074 Sum_probs=125.8
Q ss_pred EEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCCccccCccccccccccccccCCCCCCccc
Q 004721 94 VVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPGWF 173 (733)
Q Consensus 94 viaHRG~~~~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l~rtt~~~~~~~~~~~~~~~~g~~~~g~~ 173 (733)
|||||| ||++||++|+++ | +||+|||+| ||++||+||++++
T Consensus 1 IiAHRG-------NTl~AF~~A~~~--d--gvE~DVr~t-Dg~lVV~HD~~l~--------------------------- 41 (192)
T cd08584 1 IIAHRG-------NTITALKRTFEN--F--GVETDIRDY-GGQLVISHDPFVK--------------------------- 41 (192)
T ss_pred CCccch-------HHHHHHHHHHHC--C--EEEEEEEee-CCeEEEECCCCCC---------------------------
Confidence 579999 999999999999 8 999999999 9999999999873
Q ss_pred cccCCHHhhccccccccccCCCCCCCCCCcccccHHHHHHhhCCCceEeeccCchhhhhcCCcHHHHHHHHHhhcCC---
Q 004721 174 SIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKPPGLWLNIQHDAFYAQHNLSMRSFVLSVSRSVVV--- 250 (733)
Q Consensus 174 v~d~T~~eL~~l~~~~~~~~~~~~~~g~~~~iptL~e~l~~~~~~~l~iEiK~~~~~~~~~~~~~~~v~~~l~~~~~--- 250 (733)
++|||+|+|+++++..++||||.+ ++++.+++++++++.
T Consensus 42 ------------------------------~~PtLeEvL~~~~~~~l~inIK~~--------~l~~~l~~li~~~~~~~~ 83 (192)
T cd08584 42 ------------------------------NGELLEDWLKEYNHGTLILNIKAE--------GLELRLKKLLAEYGITNY 83 (192)
T ss_pred ------------------------------CCCCHHHHHHhcccccEEEEECch--------hHHHHHHHHHHhcCCcce
Confidence 458999999999887899999954 378899999999987
Q ss_pred ceeccCCHHHHHHHHHhcCCCcccchhhhcCCCccCCCCCcchhHHHhhHHHHHhhcccccCCccccccCCCccCCCCCh
Q 004721 251 NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTFASGILVPKDYIWPVDESLYLLPHT 330 (733)
Q Consensus 251 ~~i~SF~~~~l~~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~i~~~~~~i~~~~~~~~~~~~~ 330 (733)
++++||++..+++++.-.+ ++.. ..+..+.. . ..-.+...+.++-.+. .. ..-.+.
T Consensus 84 vi~ssf~~~~l~~~~~~~~----~i~t---r~Se~E~~-----~----~~~~~~~~~~~VW~D~--f~------~~~~~~ 139 (192)
T cd08584 84 FFLDMSVPDIIKYLENGEK----RTAT---RVSEYEPI-----P----TALSLYEKADWVWIDS--FT------SLWLDN 139 (192)
T ss_pred EEEEcCCHHHHHHHhcCCC----eeEE---eecccccc-----h----HHHHhhccccEEEEec--cc------ccCCCH
Confidence 4899999999999977542 1211 11111110 0 0001112344432221 10 112257
Q ss_pred HHHHHHHHcCCeEEEeecCCCCCcccCCCCChHHHHHHHH--hcCCcccceEEecCCCCc
Q 004721 331 TIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFI--DNGDFSVDGVLSDFPLTP 388 (733)
Q Consensus 331 ~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~~~~~l~--~~G~~~VDgIiTD~P~~~ 388 (733)
+.++...++|.++..=. .| ... -|-.++++.+. +...-.-+.|.||+|+.+
T Consensus 140 ~~~~~~~~~~~~~c~VS--pE-Lh~----~~~~~~~~~~~~~~~~~~~~~~~CT~~p~~~ 192 (192)
T cd08584 140 DLILKLLKAGKKICLVS--PE-LHG----RDHLAEWEAKQYIEFLKENFDALCTKVPDLW 192 (192)
T ss_pred HHHHHHHHCCcEEEEEC--HH-HcC----CChHHHHHHHHhhhhccccCeeEeccCcccC
Confidence 89999999999986543 22 111 12224444322 211111589999999863
|
This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues. |
| >KOG2258 consensus Glycerophosphoryl diester phosphodiesterase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.85 E-value=5e-21 Score=205.44 Aligned_cols=251 Identities=21% Similarity=0.248 Sum_probs=172.3
Q ss_pred CCEEEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCCccccCccccccccccccccCCCCCC
Q 004721 91 PPFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTP 170 (733)
Q Consensus 91 ~~~viaHRG~~~~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l~rtt~~~~~~~~~~~~~~~~g~~~~ 170 (733)
...|++|||+++.+||||++||++|++.|+| .||+||++|+||++|++||.+.+|++++..
T Consensus 68 ~~~i~~~rga~g~~penT~~A~~~a~~~Gad--~ie~dV~~TsDg~~v~l~d~~~~r~~~v~~----------------- 128 (341)
T KOG2258|consen 68 GWLIIAHRGASGDAPENTLAAYKKAIADGAD--LIELDVQMTSDGVPVILHDSTTVRVTGVPE----------------- 128 (341)
T ss_pred CceeEeccCCCCCCCcccHHHHHHHHHcCCc--EEEeccccCCCCceEEeecCcceeeeccee-----------------
Confidence 6889999999999999999999999999999 999999999999999999999999998875
Q ss_pred ccccccCCHHhhccccccccccCCCCCCCCCCcccccHHHHHHhhCCC--ceEeeccCchhhhhcCCcHHHHHHHHHhhc
Q 004721 171 GWFSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKPP--GLWLNIQHDAFYAQHNLSMRSFVLSVSRSV 248 (733)
Q Consensus 171 g~~v~d~T~~eL~~l~~~~~~~~~~~~~~g~~~~iptL~e~l~~~~~~--~l~iEiK~~~~~~~~~~~~~~~v~~~l~~~ 248 (733)
.+.++||.|++++..........+.+. .+++|+|+|....+-.. .+.-|.| ..+.+.+++.+++.
T Consensus 129 --~~~~lt~~e~~~l~~~~~~~~~~~~~~--~~~~~~l~e~v~~~~~~n~~~l~d~~---------~~~~~~vl~~l~~~ 195 (341)
T KOG2258|consen 129 --IVFDLTWMELRKLGPKIENPFAGPIIT--LEKLLTLAEAVASVVGNNVAMLNDVK---------LLVVDKVLEALKNA 195 (341)
T ss_pred --eeccCCHHHHhccCccccCcccccccc--hhhhccHHHHHHHHHcCChhhhhhhh---------hhhHHHHHHHHHHH
Confidence 589999999999987765432111111 36899999999987542 2333444 13566677777765
Q ss_pred CC-------ceeccCCHHHHHHHHHhcCCCcccchhhhcCCCccCCCCCcchhHHHhhHHHHHhhcccccCCccccccCC
Q 004721 249 VV-------NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTFASGILVPKDYIWPVD 321 (733)
Q Consensus 249 ~~-------~~i~SF~~~~l~~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~i~~~~~~i~~~~ 321 (733)
+. +++|||++.++.++++..| ...+.. .+... ..+..+.++.++.++.++...+.+..
T Consensus 196 ~~~~~~~~kv~v~s~~~~~l~~~~~~~~--~~~i~~-~~~~~------------~ls~~~dik~~~~~~~~~~~~~~~~~ 260 (341)
T KOG2258|consen 196 TSDFSLYDKVLVQSFNPIVLYRLKKLDP--FILIGD-TWRFT------------FLSGIEDIKKRAFAVVSSKLAIFPVS 260 (341)
T ss_pred hcCCCccceEEEEecCcHHHHHhccCCc--eEEecc-eecch------------hhccchhhhcccceeeechHHHHHHH
Confidence 43 4899999999999999876 322221 11100 11122344445555555554443321
Q ss_pred CccCCCCChHHHHHHHHcCCeEEEeecCCCCCcccCCCCChHHHHHHHHh-cCCcccceEEecCCCCcccc
Q 004721 322 ESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFID-NGDFSVDGVLSDFPLTPSAA 391 (733)
Q Consensus 322 ~~~~~~~~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~~~~~l~~-~G~~~VDgIiTD~P~~~~~~ 391 (733)
..-.......++...++.++.|+++..+++.....++..+..-++..+.. .| ++|.+||++-.+..+
T Consensus 261 ~~~~~~~~~~v~~~~~~~~~~v~~~~~~~e~~~~~d~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l 328 (341)
T KOG2258|consen 261 DSLVLAITKNVVAPLQKLNLVVYVEVFNNEVVLAVDFSAAPTIELAGWITNVG---IDGYITDFHLTAPRL 328 (341)
T ss_pred HHHhhhhhcceeeehhcCCcEEEEEEeeccceeeccccccCceEeeeeecccc---ccCceeeccchhhHh
Confidence 11111222368889999999999999998855566655454333333333 34 666666666654443
|
|
| >cd08577 PI-PLCc_GDPD_SF_unchar3 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases | Back alignment and domain information |
|---|
Probab=99.35 E-value=7.7e-12 Score=127.10 Aligned_cols=212 Identities=15% Similarity=0.126 Sum_probs=121.6
Q ss_pred EecCCCCCCCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeeccccccccccCCCcCCCcccccccccccCcccccc
Q 004721 411 ISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIFSFS 490 (733)
Q Consensus 411 IaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L~rtt~v~~~~~~~r~~~~~~~~~~~g~~i~d 490 (733)
-+|-=+....| |..|++.||++||.||+++ ||+++|.||.++.+.-. .+.+
T Consensus 4 hsHNDY~r~~P------l~~Al~~g~~svEaDV~l~-dg~l~V~Hd~~~l~~~~----------------------tl~~ 54 (228)
T cd08577 4 HSHNDYWRKRP------LYDALSAGFGSIEADVWLV-NGDLLVAHDEVDLSPAR----------------------TLES 54 (228)
T ss_pred ccccccccccc------hHHHHHcCCCEEEEeEEEE-CCEEEEEcChhHcCccC----------------------CHHH
Confidence 34555555555 7889999999999999999 99999999999877522 5789
Q ss_pred cCHHHHhccCccccCCCccccccCCcCCCCCccccCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCCcHHHHHHHHHH
Q 004721 491 LIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEALG 570 (733)
Q Consensus 491 ~T~~EL~~L~~~~~~~~~~~~~~~~~~~~g~~~IptLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~v~~~l~ 570 (733)
+++++|.++..... + ... ........++||||...... ..++.++++.++
T Consensus 55 Lyl~pL~~~l~~~n-~----------------~~~---------~~~~~~l~LlIDiKt~g~~t----~~~l~~~L~~~~ 104 (228)
T cd08577 55 LYLDPLLEILDQNN-G----------------QAY---------NDPEQPLQLLIDIKTDGEST----YPALEEVLKPYI 104 (228)
T ss_pred HhHHHHHHHHHHcC-C----------------CCC---------CCCCCceEEEEEECCCChHH----HHHHHHHHHHHH
Confidence 99999987543321 1 111 11111247999999765321 245667777787
Q ss_pred HcCCCCC------CCceEEEEeCCHHHHHHHHhccCceEEEEeecccc-hhhhHHHHHHH-----HHHhHhcCCCccccc
Q 004721 571 NAGYNKQ------TALKVMIQSTDSSVLMKLREKTSYELVYKVKENIR-DALNQTIEDIK-----KFADSVVLSKESVYP 638 (733)
Q Consensus 571 ~~~~~~~------~~~~vii~Sfd~~~L~~lk~~p~~~~~~l~~~~~~-~~~~~~l~~i~-----~~a~~i~~~~~~i~~ 638 (733)
+.++... ..=.|+++.-.|..+.. .. ..+..| ++.... +........+. .|...++.+.....+
T Consensus 105 ~~~~~~~~~~~~~~pvtvV~tGn~p~~~~~--~~-~~r~~f-~D~~l~~~~~~~~~~~~~~~~S~~~~~~~~~~~~g~~~ 180 (228)
T cd08577 105 DIGYLSYYDKLVPGPVTVVITGNRPKEEVK--SQ-YPRYIF-FDGRLDEDLPDEQLARLSPMISASFAKFSKWNGKGDTP 180 (228)
T ss_pred hcCceeecCcEEecCeEEEEeCCCChhhhc--cc-cCCeEE-EeCChhhccccccccccceEEEccHHHhcCCCCCCCCC
Confidence 7776632 11123444443433211 11 112222 222111 11000000010 111111111111111
Q ss_pred CCccccccchHHHHHHHHCCCcEEEEecCC-cccccccccCCChHHHHHHHHhhcCcCEEEeCC
Q 004721 639 LNSAFITSATDIVQRLQSFKLPVYVETFSN-EFVSQAWDFFSDPTVEINTYYEGAGIDGVITEF 701 (733)
Q Consensus 639 ~~~~~l~~~~~~v~~~~~~Gl~v~~wTvn~-~~~~~~~~~~~d~~~e~~~~l~~~GVdgIiTD~ 701 (733)
. ..+..-.++++.+|++|+++.+||+++ .. .+..++ ++|||+|+||+
T Consensus 181 ~--~q~~~l~~~v~~a~~~Gl~vr~Wtv~~~~~-------------~~~~l~-~~GVd~I~TDd 228 (228)
T cd08577 181 E--DEKEKLKSIIDKAHARGKKVRFWGTPDRPN-------------VWKTLM-ELGVDLLNTDD 228 (228)
T ss_pred H--HHHHHHHHHHHHHHHCCCEEEEEccCChHH-------------HHHHHH-HhCCCEEecCC
Confidence 0 112223678999999999999999975 43 677776 99999999995
|
This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues. |
| >cd08576 GDPD_like_SMaseD_PLD Glycerophosphodiester phosphodiesterase-like domain of spider venom sphingomyelinases D, bacterial phospholipase D, and similar proteins | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.3e-11 Score=123.23 Aligned_cols=216 Identities=15% Similarity=0.186 Sum_probs=129.9
Q ss_pred EEecCCCCCCCCCchHHHHHHHHHCCCCeeecCceeecCCeE-EEeeccccccccccCCCcCCCcccccccccccCcccc
Q 004721 410 VISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVP-FCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIFS 488 (733)
Q Consensus 410 iIaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~-Vv~HD~~L~rtt~v~~~~~~~r~~~~~~~~~~~g~~i 488 (733)
+|||| =||++....++..||..||+||...++|.+ ..+||.-.+- . .+ .
T Consensus 2 ~iaHm-------Vn~~~~v~~~l~~GANaiE~Dv~f~~~~~~~~~~Hg~pcdc-~--------------------r~-c- 51 (265)
T cd08576 2 AIAHM-------VNDLEGVDDALDHGANAIEIDVTFWSNGTGWWADHDVPCDC-F--------------------RG-C- 51 (265)
T ss_pred cchhh-------hccHHHHHHHHHcCCCceeEEEEEccCCcEEEeeCCCcccc-c--------------------cC-C-
Confidence 57777 499999999999999999999999999987 5666642211 0 00 0
Q ss_pred cccCHHHHhccCccccCCCccccccCCcCCCCCccccCHHHHHHHHHhcC------CCceEEEEecchhHHHhh---cCC
Q 004721 489 FSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNAN------SLSGVLISIENAVYLAEK---QGM 559 (733)
Q Consensus 489 ~d~T~~EL~~L~~~~~~~~~~~~~~~~~~~~g~~~IptLeEvL~~~~~~~------~~~~l~iEiK~~~~~~~~---~~~ 559 (733)
.+---|.++|+..++.. +.+-+.+++|.+....+. .+.
T Consensus 52 ---------------------------------~~~~~f~~~l~~~r~~ttpg~~~~l~lv~lDlK~~~~~~~~~~~ag~ 98 (265)
T cd08576 52 ---------------------------------TAREMFDEILDYRRNGTTPGFRENLIFVWLDLKNPDLCGECSINAGR 98 (265)
T ss_pred ---------------------------------cHHHHHHHHHHHHHhcCCCCccceeEEEEEEcCCCCcCHHHHHHHHH
Confidence 01111344444444331 234689999977654321 122
Q ss_pred cHHHHHHHHHHHcCCCCCCCceE--EEEeC---CHHHHHHHHhc-c--Cce------EEEEeecccchhhhHHHHHHHHH
Q 004721 560 SVTNSVMEALGNAGYNKQTALKV--MIQST---DSSVLMKLREK-T--SYE------LVYKVKENIRDALNQTIEDIKKF 625 (733)
Q Consensus 560 ~~~~~v~~~l~~~~~~~~~~~~v--ii~Sf---d~~~L~~lk~~-p--~~~------~~~l~~~~~~~~~~~~l~~i~~~ 625 (733)
++++++ |+.|+-.. ...|+ +++.. +...++.+++. . +.. +++-+.. ...+..+++.
T Consensus 99 ~la~~l---l~~~w~~~-~~~ra~~~~s~~~~~~~~~~~~~~~~l~~~~~~~~~~~kvg~df~~------n~~l~~~~~~ 168 (265)
T cd08576 99 DLARKL---LEPYWNGG-SGARALYGFSIPSITDSRFFKGIRDRLNSEEAVSGLLDKVGKDFSG------NEDLEDIRRV 168 (265)
T ss_pred HHHHHH---HHHhhcCC-CCeEEEEEEEeccccchHHHHHHHHHHHhcCchhhHHHhhcccccC------CCChHHHHHH
Confidence 333333 44443211 01243 34433 34567777654 2 221 2222221 1124555554
Q ss_pred HhHhcCCCcccccCC---ccc--cccchHHHHHHHHCCC-----cEEEEecCCcccccccccCCChHHHHHHHHhhcCcC
Q 004721 626 ADSVVLSKESVYPLN---SAF--ITSATDIVQRLQSFKL-----PVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGID 695 (733)
Q Consensus 626 a~~i~~~~~~i~~~~---~~~--l~~~~~~v~~~~~~Gl-----~v~~wTvn~~~~~~~~~~~~d~~~e~~~~l~~~GVd 695 (733)
.+..+ ..+++... .-. ...++++++.+|++|. +|++||||++. ++.+++ ++|||
T Consensus 169 ~~~~~--~~h~w~~dGitnC~~~~~~~~~lv~~~~~rd~~g~i~kV~vWTVn~~~-------------~~~~ll-~~GVD 232 (265)
T cd08576 169 YDYGG--DGHIWQSDGITNCLEKYRTCARLREAIKKRDTPGYLGKVYGWTSDKGS-------------SVRKLL-RLGVD 232 (265)
T ss_pred HHhcC--cCceecCCCcccccccccccHHHHHHHHHcCCCCcCCeEEEEeCCCHH-------------HHHHHH-hcCCC
Confidence 44443 12333221 001 1456889999999999 99999999987 788887 99999
Q ss_pred EEEeCChHHHHHHHHhhcc
Q 004721 696 GVITEFPMTAARYRSKLVR 714 (733)
Q Consensus 696 gIiTD~P~~~~~~l~~~~~ 714 (733)
|||||+|+.+.+++++..-
T Consensus 233 GIITD~P~~i~~~l~~~~~ 251 (265)
T cd08576 233 GIITNYPKRIIDVLKESEF 251 (265)
T ss_pred EEEECCHHHHHHHHHhccc
Confidence 9999999999999887654
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase-like domain (GDPD-like) present in sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.4) from spider venom, the Corynebacterium pseudotuberculosis Phospholipase D (PLD)-like protein from pathogenic bacteria, and the Ajellomyces capsulatus H143 PLD-like protein from ascomycetes. Spider SMases D and bacterial PLD proteins catalyze the Mg2+-dependent hydrolysis of sphingomyelin producing choline and ceramide 1-phosphate (C1P), which possess a number of biological functions, such as regulating cell proliferation and apoptosis, participating in inflammatory responses, and playing a key role in phagocytosis. In the presence of Mg2+, SMases D can function as lysophospholipase D and hydrolyze lysophosphatidylcholine (LPC) to choline |
| >cd08577 PI-PLCc_GDPD_SF_unchar3 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.1e-11 Score=126.11 Aligned_cols=93 Identities=17% Similarity=0.061 Sum_probs=65.0
Q ss_pred HHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCCccccCccccccccccccccCCCCCCccccccCCHHhhccccccccc
Q 004721 112 YSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPGWFSIDYTLNDLSNIILNQGV 191 (733)
Q Consensus 112 f~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l~rtt~~~~~~~~~~~~~~~~g~~~~g~~v~d~T~~eL~~l~~~~~~ 191 (733)
|..|++.||+ +||.||+++ ||+++|.||..+.|. + . -+.++++++|.++.....
T Consensus 15 l~~Al~~g~~--svEaDV~l~-dg~l~V~Hd~~~l~~-~--~-------------------tl~~Lyl~pL~~~l~~~n- 68 (228)
T cd08577 15 LYDALSAGFG--SIEADVWLV-NGDLLVAHDEVDLSP-A--R-------------------TLESLYLDPLLEILDQNN- 68 (228)
T ss_pred hHHHHHcCCC--EEEEeEEEE-CCEEEEEcChhHcCc-c--C-------------------CHHHHhHHHHHHHHHHcC-
Confidence 6789999999 999999999 999999999998765 1 1 478999999988654321
Q ss_pred cCCCCCCCCCCcccccHHHHHHhhC-CCceEeeccCchhhhhcCCcHHHHHHHHHhhcCC
Q 004721 192 YSRTDKFDGNGFQILTVQDMARQIK-PPGLWLNIQHDAFYAQHNLSMRSFVLSVSRSVVV 250 (733)
Q Consensus 192 ~~~~~~~~g~~~~iptL~e~l~~~~-~~~l~iEiK~~~~~~~~~~~~~~~v~~~l~~~~~ 250 (733)
+ ... ...+ ...|+||||...... ..+...+++.+++.+.
T Consensus 69 --------~---~~~------~~~~~~l~LlIDiKt~g~~t---~~~l~~~L~~~~~~~~ 108 (228)
T cd08577 69 --------G---QAY------NDPEQPLQLLIDIKTDGEST---YPALEEVLKPYIDIGY 108 (228)
T ss_pred --------C---CCC------CCCCCceEEEEEECCCChHH---HHHHHHHHHHHHhcCc
Confidence 1 111 2222 367999999654221 1345556666666554
|
This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues. |
| >cd08576 GDPD_like_SMaseD_PLD Glycerophosphodiester phosphodiesterase-like domain of spider venom sphingomyelinases D, bacterial phospholipase D, and similar proteins | Back alignment and domain information |
|---|
Probab=99.14 E-value=7.1e-10 Score=113.48 Aligned_cols=53 Identities=13% Similarity=0.235 Sum_probs=47.2
Q ss_pred CChHHHHHHHHcCC-----eEEEeecCCCCCcccCCCCChHHHHHHHHhcCCcccceEEecCCCCccccchhc
Q 004721 328 PHTTIVLDAHKERL-----EVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPSAAVDCF 395 (733)
Q Consensus 328 ~~~~~v~~ah~~Gl-----~V~~WTvn~~~~~~~~~~~d~~~~~~~l~~~G~~~VDgIiTD~P~~~~~~l~~~ 395 (733)
..+++++.+|++|. +|++||||++ +++++++++| |||||||+|+.+.++++..
T Consensus 192 ~~~~lv~~~~~rd~~g~i~kV~vWTVn~~------------~~~~~ll~~G---VDGIITD~P~~i~~~l~~~ 249 (265)
T cd08576 192 TCARLREAIKKRDTPGYLGKVYGWTSDKG------------SSVRKLLRLG---VDGIITNYPKRIIDVLKES 249 (265)
T ss_pred ccHHHHHHHHHcCCCCcCCeEEEEeCCCH------------HHHHHHHhcC---CCEEEECCHHHHHHHHHhc
Confidence 46889999999999 9999999864 8899999999 9999999999888776554
|
This subfamily corresponds to the glycerophosphodiester phosphodiesterase-like domain (GDPD-like) present in sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.4) from spider venom, the Corynebacterium pseudotuberculosis Phospholipase D (PLD)-like protein from pathogenic bacteria, and the Ajellomyces capsulatus H143 PLD-like protein from ascomycetes. Spider SMases D and bacterial PLD proteins catalyze the Mg2+-dependent hydrolysis of sphingomyelin producing choline and ceramide 1-phosphate (C1P), which possess a number of biological functions, such as regulating cell proliferation and apoptosis, participating in inflammatory responses, and playing a key role in phagocytosis. In the presence of Mg2+, SMases D can function as lysophospholipase D and hydrolyze lysophosphatidylcholine (LPC) to choline |
| >PF13653 GDPD_2: Glycerophosphoryl diester phosphodiesterase family; PDB: 3RLG_A 2F9R_B 1XX1_A 3RLH_A | Back alignment and domain information |
|---|
Probab=98.33 E-value=2.1e-07 Score=62.16 Aligned_cols=30 Identities=27% Similarity=0.579 Sum_probs=23.2
Q ss_pred eEEEeecCCCCCcccCCCCChHHHHHHHHhcCCcccceEEecCCC
Q 004721 342 EVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPL 386 (733)
Q Consensus 342 ~V~~WTvn~~~~~~~~~~~d~~~~~~~l~~~G~~~VDgIiTD~P~ 386 (733)
+|+.||+|++ +.++.++++| ||||+||+|+
T Consensus 1 kV~~WT~d~~------------~~~~~~l~~G---VDgI~Td~p~ 30 (30)
T PF13653_consen 1 KVYFWTPDKP------------ASWRELLDLG---VDGIMTDYPD 30 (30)
T ss_dssp EEEEET--SH------------HHHHHHHHHT----SEEEES-HH
T ss_pred CeEEecCCCH------------HHHHHHHHcC---CCEeeCCCCC
Confidence 6899998764 8899999999 9999999984
|
|
| >PF13653 GDPD_2: Glycerophosphoryl diester phosphodiesterase family; PDB: 3RLG_A 2F9R_B 1XX1_A 3RLH_A | Back alignment and domain information |
|---|
Probab=98.31 E-value=4.7e-07 Score=60.47 Aligned_cols=30 Identities=27% Similarity=0.474 Sum_probs=23.2
Q ss_pred cEEEEecCCcccccccccCCChHHHHHHHHhhcCcCEEEeCChH
Q 004721 660 PVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPM 703 (733)
Q Consensus 660 ~v~~wTvn~~~~~~~~~~~~d~~~e~~~~l~~~GVdgIiTD~P~ 703 (733)
+|+.||+|+.. .+..++ ++|||||+||+|+
T Consensus 1 kV~~WT~d~~~-------------~~~~~l-~~GVDgI~Td~p~ 30 (30)
T PF13653_consen 1 KVYFWTPDKPA-------------SWRELL-DLGVDGIMTDYPD 30 (30)
T ss_dssp EEEEET--SHH-------------HHHHHH-HHT-SEEEES-HH
T ss_pred CeEEecCCCHH-------------HHHHHH-HcCCCEeeCCCCC
Confidence 58999999886 788887 9999999999995
|
|
| >cd08592 PI-PLCc_gamma Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma | Back alignment and domain information |
|---|
Probab=98.31 E-value=2.7e-06 Score=85.33 Aligned_cols=51 Identities=20% Similarity=0.189 Sum_probs=43.8
Q ss_pred eEEecCCC---CCCCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeecccc
Q 004721 409 LVISKNGA---SGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINL 459 (733)
Q Consensus 409 ~iIaHRG~---~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L 459 (733)
+..+|.-+ ....+|||++||.+|++.||+.||+||+-++||+|||+||.++
T Consensus 13 I~SSHNTYL~g~Ql~~ess~eay~~AL~~GcR~vElDvwdg~dgePvV~HG~tl 66 (229)
T cd08592 13 IASSHNTYLTGDQLSSESSLEAYARCLRMGCRCIELDCWDGPDGMPIIYHGHTL 66 (229)
T ss_pred eeccccccccCCccCCccCHHHHHHHHHhCCCEEEEEeecCCCCCEEEEeCCcC
Confidence 34456543 3568999999999999999999999999999999999999765
|
This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain.The PLC catalytic core domain is a TIM barrel with two highl |
| >cd08592 PI-PLCc_gamma Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma | Back alignment and domain information |
|---|
Probab=98.24 E-value=3.4e-06 Score=84.67 Aligned_cols=43 Identities=21% Similarity=0.113 Sum_probs=40.5
Q ss_pred CCCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCCc
Q 004721 102 GIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLD 146 (733)
Q Consensus 102 ~~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l~ 146 (733)
...+|||++||..|++.|++ +||+||+-++||++||+||.++.
T Consensus 25 Ql~~ess~eay~~AL~~GcR--~vElDvwdg~dgePvV~HG~tlt 67 (229)
T cd08592 25 QLSSESSLEAYARCLRMGCR--CIELDCWDGPDGMPIIYHGHTLT 67 (229)
T ss_pred ccCCccCHHHHHHHHHhCCC--EEEEEeecCCCCCEEEEeCCcCC
Confidence 56899999999999999999 99999999999999999998763
|
This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain.The PLC catalytic core domain is a TIM barrel with two highl |
| >cd08627 PI-PLCc_gamma1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma1 | Back alignment and domain information |
|---|
Probab=97.97 E-value=6.6e-06 Score=82.25 Aligned_cols=51 Identities=20% Similarity=0.173 Sum_probs=43.9
Q ss_pred eEEecCCC---CCCCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeecccc
Q 004721 409 LVISKNGA---SGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINL 459 (733)
Q Consensus 409 ~iIaHRG~---~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L 459 (733)
+-.+|.-+ ....+|||++||.+|+..||+.||+||+-++||+|||+||.++
T Consensus 13 I~SSHNTYL~g~Ql~~~ss~e~y~~aL~~GcR~vElD~wdg~dgePvV~Hg~tl 66 (229)
T cd08627 13 ISSSHNTYLTGDQFSSESSLEAYARCLRMGCRCIELDCWDGPDGMPVIYHGHTL 66 (229)
T ss_pred eecCcCccccCCccCCcccHHHHHHHHHhCCCEEEEEeecCCCCCEEEEeCCcC
Confidence 33455543 3568899999999999999999999999999999999999776
|
This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain. The PLC catalytic core domain is a TIM barrel with tw |
| >cd08627 PI-PLCc_gamma1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma1 | Back alignment and domain information |
|---|
Probab=97.90 E-value=1.3e-05 Score=80.07 Aligned_cols=43 Identities=19% Similarity=0.092 Sum_probs=40.5
Q ss_pred CCCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCCc
Q 004721 102 GIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLD 146 (733)
Q Consensus 102 ~~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l~ 146 (733)
...+|||++||..|++.|++ .||+|||-++||++||+||.|+.
T Consensus 25 Ql~~~ss~e~y~~aL~~GcR--~vElD~wdg~dgePvV~Hg~tlt 67 (229)
T cd08627 25 QFSSESSLEAYARCLRMGCR--CIELDCWDGPDGMPVIYHGHTLT 67 (229)
T ss_pred ccCCcccHHHHHHHHHhCCC--EEEEEeecCCCCCEEEEeCCcCC
Confidence 45789999999999999999 99999999999999999999883
|
This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain. The PLC catalytic core domain is a TIM barrel with tw |
| >KOG2421 consensus Predicted starch-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.74 E-value=4.8e-06 Score=92.03 Aligned_cols=57 Identities=23% Similarity=0.247 Sum_probs=50.7
Q ss_pred CcceEEecCCCCC-------CCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeeccccccc
Q 004721 406 ANLLVISKNGASG-------DYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINS 462 (733)
Q Consensus 406 ~~~~iIaHRG~~~-------~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L~rt 462 (733)
...+.++|||... ..+|||+..+..+.+.|+|++|+|||+|+|.++||+||..+...
T Consensus 323 ~~~l~~g~rg~g~sy~~~~~~~~ent~~~~~~~~~~~ad~ve~dvqlt~D~~~vvyh~f~~~~~ 386 (417)
T KOG2421|consen 323 GLSLNTGHRGNGTSYTVLSQVLRENTIVIVDNVLELGADLVEMDVQLTKDLVPVVYHDFVLLVS 386 (417)
T ss_pred chhhhccCCcCCchhhhhhhhhccceeeeehhHHHhhhhHHHhhcccccCCceeeeccceeEEe
Confidence 4567899999743 46899999999999999999999999999999999999988654
|
|
| >smart00148 PLCXc Phospholipase C, catalytic domain (part); domain X | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.001 Score=62.24 Aligned_cols=43 Identities=14% Similarity=0.176 Sum_probs=39.3
Q ss_pred CCCCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeecccc
Q 004721 417 SGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINL 459 (733)
Q Consensus 417 ~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L 459 (733)
...+.+|+..+|.++++.|++++|+||+.++||.++++|+.++
T Consensus 23 ~~~~~~~q~~~i~~qL~~GvR~~dirv~~~~~~~~~v~Hg~~~ 65 (135)
T smart00148 23 KQLWGESSVEGYIQALDHGCRCVELDCWDGPDGEPVIYHGHTF 65 (135)
T ss_pred ccccCcccHHHHHHHHHhCCCEEEEEcccCCCCCEEEEECCcc
Confidence 3567899999999999999999999999999999999999643
|
Phosphoinositide-specific phospholipases C. These enzymes contain 2 regions (X and Y) which together form a TIM barrel-like structure containing the active site residues. Phospholipase C enzymes (PI-PLC) act as signal transducers that generate two second messengers, inositol-1,4,5-trisphosphate and diacylglycerol. The bacterial enzyme [6] appears to be a homologue of the mammalian PLCs. |
| >KOG2421 consensus Predicted starch-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.37 E-value=2.4e-05 Score=86.51 Aligned_cols=58 Identities=21% Similarity=0.229 Sum_probs=51.4
Q ss_pred CCCEEEEeCCCC-------CCCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCCcccc
Q 004721 90 DPPFVVARGGFS-------GIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNAS 149 (733)
Q Consensus 90 ~~~~viaHRG~~-------~~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l~rtt 149 (733)
+..+-++|||.. ....|||+..+..|++.|+| ++|+|||+|+|.++||+||..+...-
T Consensus 323 ~~~l~~g~rg~g~sy~~~~~~~~ent~~~~~~~~~~~ad--~ve~dvqlt~D~~~vvyh~f~~~~~~ 387 (417)
T KOG2421|consen 323 GLSLNTGHRGNGTSYTVLSQVLRENTIVIVDNVLELGAD--LVEMDVQLTKDLVPVVYHDFVLLVSV 387 (417)
T ss_pred chhhhccCCcCCchhhhhhhhhccceeeeehhHHHhhhh--HHHhhcccccCCceeeeccceeEEee
Confidence 456789999964 24689999999999999999 99999999999999999999887654
|
|
| >cd08597 PI-PLCc_PRIP_metazoa Catalytic domain of metazoan phospholipase C related, but catalytically inactive protein | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00025 Score=72.91 Aligned_cols=41 Identities=15% Similarity=0.147 Sum_probs=38.1
Q ss_pred CCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeecccc
Q 004721 419 DYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINL 459 (733)
Q Consensus 419 ~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L 459 (733)
..-+-|+++|.+|+..||+.||+||+-++||+|||+|+.++
T Consensus 26 l~~~ss~~~y~~aL~~GcR~vElD~w~g~~gepvV~Hg~tl 66 (260)
T cd08597 26 LRGPSSVEGYVRALQRGCRCVELDCWDGPNGEPVIYHGHTL 66 (260)
T ss_pred ecCccCHHHHHHHHHhCCCEEEEEeEcCCCCCEEEEeCCcc
Confidence 45678999999999999999999999999999999999875
|
This family corresponds to the catalytic domain present in metazoan phospholipase C related, but catalytically inactive proteins (PRIP), which belong to a group of novel Inositol 1,4,5-trisphosphate (InsP3) binding protein. PRIP has a primary structure and domain architecture, incorporating a pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain with highly conserved X- and Y-regions split by a linker sequence, and a C-terminal C2 domain, similar to phosphoinositide-specific phospholipases C (PI-PLC, EC 3.1.4.11)-delta isoforms. Due to replacement of critical catalytic residues, PRIP do not have PLC enzymatic activity. PRIP consists of two subfamilies, PRIP-1(previously known as p130 or PLC-1), which is predominantly expressed in the brain, and PRIP-2 (previously known as PLC-2), which exhibits a relatively ubiquitous expression. Experiment |
| >cd08597 PI-PLCc_PRIP_metazoa Catalytic domain of metazoan phospholipase C related, but catalytically inactive protein | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.00054 Score=70.46 Aligned_cols=41 Identities=15% Similarity=0.042 Sum_probs=37.9
Q ss_pred CCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCC
Q 004721 103 IFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKL 145 (733)
Q Consensus 103 ~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l 145 (733)
..-+-|+++|..|++.|++ .||+|||-++||++||+||.++
T Consensus 26 l~~~ss~~~y~~aL~~GcR--~vElD~w~g~~gepvV~Hg~tl 66 (260)
T cd08597 26 LRGPSSVEGYVRALQRGCR--CVELDCWDGPNGEPVIYHGHTL 66 (260)
T ss_pred ecCccCHHHHHHHHHhCCC--EEEEEeEcCCCCCEEEEeCCcc
Confidence 4567799999999999999 9999999999999999999876
|
This family corresponds to the catalytic domain present in metazoan phospholipase C related, but catalytically inactive proteins (PRIP), which belong to a group of novel Inositol 1,4,5-trisphosphate (InsP3) binding protein. PRIP has a primary structure and domain architecture, incorporating a pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain with highly conserved X- and Y-regions split by a linker sequence, and a C-terminal C2 domain, similar to phosphoinositide-specific phospholipases C (PI-PLC, EC 3.1.4.11)-delta isoforms. Due to replacement of critical catalytic residues, PRIP do not have PLC enzymatic activity. PRIP consists of two subfamilies, PRIP-1(previously known as p130 or PLC-1), which is predominantly expressed in the brain, and PRIP-2 (previously known as PLC-2), which exhibits a relatively ubiquitous expression. Experiment |
| >smart00148 PLCXc Phospholipase C, catalytic domain (part); domain X | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0022 Score=60.01 Aligned_cols=43 Identities=14% Similarity=0.099 Sum_probs=39.7
Q ss_pred CCCCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCC
Q 004721 101 SGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKL 145 (733)
Q Consensus 101 ~~~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l 145 (733)
.....+|+..+|..+++.|++ ++|+||+.++||+++|+|+.++
T Consensus 23 ~~~~~~~q~~~i~~qL~~GvR--~~dirv~~~~~~~~~v~Hg~~~ 65 (135)
T smart00148 23 KQLWGESSVEGYIQALDHGCR--CVELDCWDGPDGEPVIYHGHTF 65 (135)
T ss_pred ccccCcccHHHHHHHHHhCCC--EEEEEcccCCCCCEEEEECCcc
Confidence 346789999999999999999 9999999999999999999865
|
Phosphoinositide-specific phospholipases C. These enzymes contain 2 regions (X and Y) which together form a TIM barrel-like structure containing the active site residues. Phospholipase C enzymes (PI-PLC) act as signal transducers that generate two second messengers, inositol-1,4,5-trisphosphate and diacylglycerol. The bacterial enzyme [6] appears to be a homologue of the mammalian PLCs. |
| >cd08633 PI-PLCc_eta2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta2 | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.039 Score=56.51 Aligned_cols=42 Identities=17% Similarity=0.114 Sum_probs=38.0
Q ss_pred CCCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCC
Q 004721 102 GIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKL 145 (733)
Q Consensus 102 ~~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l 145 (733)
...-+-|.++|..|+..|+. .||+|||=-.||+|||.|..|+
T Consensus 25 Ql~~~ss~e~y~~aL~~GcR--cvElD~Wdg~~~eP~V~HG~tl 66 (254)
T cd08633 25 QLMSQSRVDMYAWVLQAGCR--CVEVDCWDGPDGEPIVHHGYTL 66 (254)
T ss_pred ccCCccCHHHHHHHHHcCCc--EEEEEeecCCCCCcEEeeCCCc
Confidence 34567789999999999999 9999999999999999998776
|
This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozyme 2. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding m |
| >cd08596 PI-PLCc_epsilon Catalytic domain of metazoan phosphoinositide-specific phospholipase C-epsilon | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.047 Score=56.06 Aligned_cols=41 Identities=24% Similarity=0.172 Sum_probs=37.3
Q ss_pred CCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCC
Q 004721 103 IFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKL 145 (733)
Q Consensus 103 ~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l 145 (733)
..-+-|..+|..|+..||. .||+|++=-.||++||.|..|+
T Consensus 26 l~~~ss~~~y~~aL~~GcR--cvElD~wdG~~~eP~V~HG~tl 66 (254)
T cd08596 26 LKGESSVELYSQVLLTGCR--CVELDCWDGDDGMPIIYHGHTL 66 (254)
T ss_pred cCCccCHHHHHHHHHcCCc--EEEEEeecCCCCCcEEeeCCCc
Confidence 3457889999999999999 9999999999999999998876
|
This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-epsilon isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-epsilon represents a class of mammalian PI-PLC that has an N-terminal CDC25 homology domain with a guanyl-nucleotide exchange factor (GFF) activity, a pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core |
| >cd08594 PI-PLCc_eta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.013 Score=58.89 Aligned_cols=42 Identities=14% Similarity=0.161 Sum_probs=37.9
Q ss_pred CCCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeecccc
Q 004721 418 GDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINL 459 (733)
Q Consensus 418 ~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L 459 (733)
...-+.|.++|.+|+..||+.||+|++=-.||+|||+|..++
T Consensus 25 Ql~~~ss~e~Y~~aL~~GcRcvElD~wdg~~~ePvV~HG~tl 66 (227)
T cd08594 25 QLLSQSRVDMYARVLQAGCRCVEVDCWDGPDGEPVVHHGYTL 66 (227)
T ss_pred cccCcccHHHHHHHHHhCCcEEEEEeecCCCCCcEEeeCCCc
Confidence 356688899999999999999999999999999999997654
|
This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding motif, |
| >cd08631 PI-PLCc_delta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta4 | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.05 Score=55.99 Aligned_cols=40 Identities=18% Similarity=0.066 Sum_probs=36.8
Q ss_pred CCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCC
Q 004721 104 FPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKL 145 (733)
Q Consensus 104 ~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l 145 (733)
.-+-|.++|..|+..|+. .||+||+=-.||++||+|..|+
T Consensus 27 ~~~ss~e~y~~aL~~GcR--cvElD~wdg~~~eP~V~HG~tl 66 (258)
T cd08631 27 RGQSSVEGYIRALKRGCR--CVEVDVWDGPNGEPIVYHGHTF 66 (258)
T ss_pred cCccCHHHHHHHHHcCCc--EEEEEeecCCCCCcEEeeCCcc
Confidence 456799999999999999 9999999999999999998776
|
This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta4 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This CD corresponds to the catalytic domain which |
| >PF10223 DUF2181: Uncharacterized conserved protein (DUF2181); InterPro: IPR019356 This is region of approximately 250 residues with no known function | Back alignment and domain information |
|---|
Probab=95.33 E-value=1 Score=46.32 Aligned_cols=37 Identities=19% Similarity=0.057 Sum_probs=32.4
Q ss_pred ccHHHHHHHHHHcCCCCcEEEeeeeecC------CCeEEEecCCC
Q 004721 106 DSSSIAYSLTLITSAPSVILWCDVQLTK------DEAGICFPDLK 144 (733)
Q Consensus 106 ENTl~af~~A~~~g~d~~~iE~DV~lTk------Dg~lVv~HD~~ 144 (733)
=|+.+.++.|+...+. +||.||.+-+ ++++|..|.+.
T Consensus 11 vNsk~~L~~aL~~~~~--miEaDV~l~~~~~~~~~~~PIMahPP~ 53 (244)
T PF10223_consen 11 VNSKAELEEALSSDIM--MIEADVLLGGLNTGNEDGIPIMAHPPA 53 (244)
T ss_pred cCCHHHHHHHhCCCCC--EEEEEEEeecccCCCCCCCceeeCCCC
Confidence 5899999999998888 9999999984 78898888763
|
|
| >cd08626 PI-PLCc_beta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta4 | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.079 Score=54.51 Aligned_cols=41 Identities=20% Similarity=0.075 Sum_probs=36.3
Q ss_pred CCCccHHHHHHHHHHcCCCCcEEEeeeeecC--CCeEEEecCCCC
Q 004721 103 IFPDSSSIAYSLTLITSAPSVILWCDVQLTK--DEAGICFPDLKL 145 (733)
Q Consensus 103 ~~pENTl~af~~A~~~g~d~~~iE~DV~lTk--Dg~lVv~HD~~l 145 (733)
..-+-|.++|..|+..|+. .||+|||=-. ||+|||+|-.|+
T Consensus 26 l~~~ss~~~y~~aL~~GcR--cvElD~wdg~~~~~eP~V~HG~tl 68 (257)
T cd08626 26 FGGKSSVEMYRQVLLAGCR--CIELDCWDGKGEDQEPIITHGKAM 68 (257)
T ss_pred ccCCccHHHHHHHHHcCCc--EEEEEecCCCCCCCCCEEeeCCCC
Confidence 4556789999999999999 9999999865 889999998776
|
This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 4. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho |
| >cd08633 PI-PLCc_eta2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta2 | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.02 Score=58.52 Aligned_cols=42 Identities=14% Similarity=0.117 Sum_probs=38.3
Q ss_pred CCCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeecccc
Q 004721 418 GDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINL 459 (733)
Q Consensus 418 ~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L 459 (733)
...-+-|.++|.+|+..||+.||+|++=-.||+|||+|..++
T Consensus 25 Ql~~~ss~e~y~~aL~~GcRcvElD~Wdg~~~eP~V~HG~tl 66 (254)
T cd08633 25 QLMSQSRVDMYAWVLQAGCRCVEVDCWDGPDGEPIVHHGYTL 66 (254)
T ss_pred ccCCccCHHHHHHHHHcCCcEEEEEeecCCCCCcEEeeCCCc
Confidence 356678899999999999999999999999999999998776
|
This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozyme 2. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding m |
| >cd08593 PI-PLCc_delta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.075 Score=54.85 Aligned_cols=41 Identities=22% Similarity=0.099 Sum_probs=37.2
Q ss_pred CCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCC
Q 004721 103 IFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKL 145 (733)
Q Consensus 103 ~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l 145 (733)
..-+-|.++|..|+..|+. .||+||+=-.||+|||+|-.|+
T Consensus 26 l~~~ss~~~y~~aL~~GcR--cvElD~wdg~~~eP~v~HG~t~ 66 (257)
T cd08593 26 LKGPSSTEAYIRALKKGCR--CVELDCWDGPDGEPIIYHGHTL 66 (257)
T ss_pred ccCCccHHHHHHHHHhCCc--EEEEEeecCCCCCcEEeeCCcc
Confidence 4556799999999999999 9999999999999999998765
|
This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This CD corresponds to the catalytic domain which is |
| >cd08558 PI-PLCc_eukaryota Catalytic domain of eukaryotic phosphoinositide-specific phospholipase C and similar proteins | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.024 Score=57.28 Aligned_cols=42 Identities=19% Similarity=0.155 Sum_probs=37.9
Q ss_pred CCCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeecccc
Q 004721 418 GDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINL 459 (733)
Q Consensus 418 ~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L 459 (733)
...-+-|.++|.+|+..||+.||+|++=-.||+|||+|..++
T Consensus 25 Ql~~~Ss~~~y~~aL~~GcRcvElD~wdg~~~eP~v~HG~t~ 66 (226)
T cd08558 25 QLTGESSVEAYIRALLRGCRCVELDCWDGPDGEPVVYHGHTL 66 (226)
T ss_pred ccCCccCHHHHHHHHHhCCcEEEEEeecCCCCCeEEeeCCCC
Confidence 356788999999999999999999999999999999997654
|
This family corresponds to the catalytic domain present in eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) and similar proteins. The higher eukaryotic PI-PLCs play a critical role in most signal transduction pathways, controlling numerous cellular events such as cell growth, proliferation, excitation and secretion. They strictly require Ca2+ for the catalytic activity. They display a clear preference towards the hydrolysis of the more highly phosphorylated membrane phospholipids PI-analogues, phosphatidylinositol 4,5-bisphosphate (PIP2) and phosphatidylinositol-4-phosphate (PIP), to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein ki |
| >cd08599 PI-PLCc_plant Catalytic domain of plant phosphatidylinositide-specific phospholipases C | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.03 Score=56.65 Aligned_cols=52 Identities=15% Similarity=0.068 Sum_probs=41.7
Q ss_pred ceEEecCCC---CCCCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeecccc
Q 004721 408 LLVISKNGA---SGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINL 459 (733)
Q Consensus 408 ~~iIaHRG~---~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L 459 (733)
.+.-+|.-+ ....-+-|.++|..|+..||..||+||+-..||+|+|+|..++
T Consensus 12 fI~sSHNTYL~g~Ql~~~ss~~~y~~aL~~GcRcvElD~Wdg~~~ep~V~HG~t~ 66 (228)
T cd08599 12 FIFSSHNSYLTGNQLSSRSSTAPIIEALLRGCRVIELDLWPGGRGDICVLHGGTL 66 (228)
T ss_pred EEeccccccccCCccCCccCHHHHHHHHHhCCCEEEEEeecCCCCCeEEEeCCCC
Confidence 345566543 2245577889999999999999999999999999999998653
|
This family corresponds to the catalytic domain present in a group of phosphoinositide-specific phospholipases C (PI-PLC, EC 3.1.4.11) encoded by PLC genes from higher plants, which are homologs of mammalian PI-PLC in terms of overall sequence similarity and domain organization. Mammalian PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. The domain arrangement of plant PI-PLCs is structurally similar to the mammalian PLC-zeta isoform, whi |
| >cd08632 PI-PLCc_eta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta1 | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.024 Score=57.93 Aligned_cols=41 Identities=15% Similarity=0.175 Sum_probs=37.1
Q ss_pred CCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeecccc
Q 004721 419 DYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINL 459 (733)
Q Consensus 419 ~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L 459 (733)
..-+-|.++|.+|+..||+.||+|++--.||.|||+|-.++
T Consensus 26 l~~~ss~e~y~~aL~~GcRcvElD~Wdg~~~eP~V~HG~Tl 66 (253)
T cd08632 26 LLSQSKVDMYARVLQAGCRCVEVDCWDGPDGEPVVHHGYTL 66 (253)
T ss_pred ccCcccHHHHHHHHHcCCcEEEEEeecCCCCCcEEeeCCCC
Confidence 45577899999999999999999999999999999998665
|
This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding m |
| >cd08595 PI-PLCc_zeta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-zeta | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.023 Score=58.30 Aligned_cols=41 Identities=15% Similarity=0.100 Sum_probs=37.8
Q ss_pred CCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeecccc
Q 004721 419 DYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINL 459 (733)
Q Consensus 419 ~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L 459 (733)
..-+-|.++|.+|+..||+.||+|++--.||.|||+|-.++
T Consensus 26 l~~~ss~e~y~~aL~~GcRcvElD~wdg~~~ep~v~HG~tl 66 (257)
T cd08595 26 LVGPSDLDGYVSALRKGCRCLEIDCWDGADNEPVVYHGYTL 66 (257)
T ss_pred ccCcccHHHHHHHHHhCCcEEEEEeecCCCCCcEEecCCCc
Confidence 45688999999999999999999999999999999998766
|
This family corresponds to the catalytic domain presenting in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-zeta isozyme. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-zeta represents a class of sperm-specific PI-PLC that has an N-terminal EF-hand domain, a PLC catalytic core domain, and a C-terminal C2 domain. The PLC catalytic core domain is a TIM barrel with two highly conserved regions (X and Y) |
| >cd08596 PI-PLCc_epsilon Catalytic domain of metazoan phosphoinositide-specific phospholipase C-epsilon | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.026 Score=57.91 Aligned_cols=42 Identities=14% Similarity=0.151 Sum_probs=38.0
Q ss_pred CCCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeecccc
Q 004721 418 GDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINL 459 (733)
Q Consensus 418 ~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L 459 (733)
...-+-|..+|.+|+..||+.||+|++=-.||+|||+|..++
T Consensus 25 Ql~~~ss~~~y~~aL~~GcRcvElD~wdG~~~eP~V~HG~tl 66 (254)
T cd08596 25 QLKGESSVELYSQVLLTGCRCVELDCWDGDDGMPIIYHGHTL 66 (254)
T ss_pred ccCCccCHHHHHHHHHcCCcEEEEEeecCCCCCcEEeeCCCc
Confidence 345578899999999999999999999999999999998766
|
This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-epsilon isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-epsilon represents a class of mammalian PI-PLC that has an N-terminal CDC25 homology domain with a guanyl-nucleotide exchange factor (GFF) activity, a pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core |
| >cd08594 PI-PLCc_eta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.032 Score=56.17 Aligned_cols=42 Identities=14% Similarity=0.098 Sum_probs=38.2
Q ss_pred CCCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCC
Q 004721 102 GIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKL 145 (733)
Q Consensus 102 ~~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l 145 (733)
...-+.|.++|..|+..|+. .||+|++=-.||+|||+|..|+
T Consensus 25 Ql~~~ss~e~Y~~aL~~GcR--cvElD~wdg~~~ePvV~HG~tl 66 (227)
T cd08594 25 QLLSQSRVDMYARVLQAGCR--CVEVDCWDGPDGEPVVHHGYTL 66 (227)
T ss_pred cccCcccHHHHHHHHHhCCc--EEEEEeecCCCCCcEEeeCCCc
Confidence 34567889999999999999 9999999999999999998876
|
This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding motif, |
| >PF10223 DUF2181: Uncharacterized conserved protein (DUF2181); InterPro: IPR019356 This is region of approximately 250 residues with no known function | Back alignment and domain information |
|---|
Probab=94.98 E-value=2.4 Score=43.63 Aligned_cols=199 Identities=13% Similarity=0.196 Sum_probs=111.7
Q ss_pred CchHHHHHHHHHCCCCeeecCceeec------CCeEEEeeccccccccccCCCcCCCcccccccccccCcccccccCHHH
Q 004721 422 SCTNLAYQKAISDGVDFIDCPVQMSK------DGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIFSFSLIWDE 495 (733)
Q Consensus 422 ENTl~Af~~A~~~Gad~iE~DV~lTk------Dgv~Vv~HD~~L~rtt~v~~~~~~~r~~~~~~~~~~~g~~i~d~T~~E 495 (733)
=|+.+..++|++..+.+||.||.+-+ +++||..|.+..
T Consensus 11 vNsk~~L~~aL~~~~~miEaDV~l~~~~~~~~~~~PIMahPP~~------------------------------------ 54 (244)
T PF10223_consen 11 VNSKAELEEALSSDIMMIEADVLLGGLNTGNEDGIPIMAHPPAT------------------------------------ 54 (244)
T ss_pred cCCHHHHHHHhCCCCCEEEEEEEeecccCCCCCCCceeeCCCCC------------------------------------
Confidence 38889999999989999999999984 678888886321
Q ss_pred HhccCccccCCCccccccCCcCCCCCccccCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCCcHHHHHHHHHHHcC--
Q 004721 496 IQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEALGNAG-- 573 (733)
Q Consensus 496 L~~L~~~~~~~~~~~~~~~~~~~~g~~~IptLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~v~~~l~~~~-- 573 (733)
..-.||||.|+.+... +. +|.+++|+.... +..+++|++..
T Consensus 55 --------------------------~SdltLee~L~~v~~~-~k-GIKLDFKs~eav---------~pSl~~L~~~~~~ 97 (244)
T PF10223_consen 55 --------------------------DSDLTLEEWLDEVLSS-RK-GIKLDFKSIEAV---------EPSLDLLAKLSDK 97 (244)
T ss_pred --------------------------CCcCcHHHHHHHHhcc-Cc-EEEEeccCHHHH---------HHHHHHHHHHhhc
Confidence 1224677777776644 33 899999986543 33445554421
Q ss_pred CCCCCCceEEEE------eCC--------H-HHHHHHHhc-cCceE--EEEeecc----cchhhhHHHHHHHHHHhHhc-
Q 004721 574 YNKQTALKVMIQ------STD--------S-SVLMKLREK-TSYEL--VYKVKEN----IRDALNQTIEDIKKFADSVV- 630 (733)
Q Consensus 574 ~~~~~~~~vii~------Sfd--------~-~~L~~lk~~-p~~~~--~~l~~~~----~~~~~~~~l~~i~~~a~~i~- 630 (733)
+. ..|+|- .+. + .+|..+++. |+.-+ |+..... .+-.+...++++...|.++.
T Consensus 98 l~----~PvWiNADIl~Gp~~~~~~~~Vd~~~Fl~~v~~~fP~~tLS~GWTT~~~~~~~~~~Yt~~~v~~M~~l~~~~~~ 173 (244)
T PF10223_consen 98 LT----RPVWINADILPGPNGPTIPGPVDAKEFLSLVAEKFPHATLSLGWTTRWGPEVPNGGYTWEMVEEMLELCKGINQ 173 (244)
T ss_pred cC----CCeeEeeeeccCCCCCCCCcccCHHHHHHHHHHhCCCEEEecCcccccCccCCCccccHHHHHHHHHHHHhhcc
Confidence 22 233222 222 2 377777777 76543 3322110 01134445666666666611
Q ss_pred CCCcccccCCccccccc-hHHHHHHHH-CCCcEEEEecCCcccccccccCCChHHHHHHHHhhcCcCEEEeCChHHHH
Q 004721 631 LSKESVYPLNSAFITSA-TDIVQRLQS-FKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPMTAA 706 (733)
Q Consensus 631 ~~~~~i~~~~~~~l~~~-~~~v~~~~~-~Gl~v~~wTvn~~~~~~~~~~~~d~~~e~~~~l~~~GVdgIiTD~P~~~~ 706 (733)
.+...-+|.-......+ +.+...+.. ....+-+|+-.++. + ...+...+....|.+-|.-|-|+..+
T Consensus 174 l~Q~VTFpvRA~l~~~S~~~l~wLL~~s~r~SLTvWs~~~D~------v---~v~~Ll~lr~~~~~~rVyyDlpe~~~ 242 (244)
T PF10223_consen 174 LPQPVTFPVRAGLARQSWPQLSWLLQQSPRYSLTVWSSKSDP------V---SVEDLLYLRRNFDKSRVYYDLPEPLR 242 (244)
T ss_pred CCCceeeeehhhhhhccHHHHHHHHcCCCCceEEEEecCCCC------c---cHHHHHHHHHhCCCcEEEEeCChhhh
Confidence 11122222211111112 223333332 46778888754432 1 12345555557899999999987654
|
|
| >cd08631 PI-PLCc_delta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta4 | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.025 Score=58.08 Aligned_cols=41 Identities=15% Similarity=0.181 Sum_probs=37.6
Q ss_pred CCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeecccc
Q 004721 419 DYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINL 459 (733)
Q Consensus 419 ~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L 459 (733)
..-+-|.++|.+|+..||+.||+|++--.||+|||+|..++
T Consensus 26 l~~~ss~e~y~~aL~~GcRcvElD~wdg~~~eP~V~HG~tl 66 (258)
T cd08631 26 LRGQSSVEGYIRALKRGCRCVEVDVWDGPNGEPIVYHGHTF 66 (258)
T ss_pred ccCccCHHHHHHHHHcCCcEEEEEeecCCCCCcEEeeCCcc
Confidence 45577999999999999999999999999999999999776
|
This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta4 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This CD corresponds to the catalytic domain which |
| >cd08630 PI-PLCc_delta3 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta3 | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.026 Score=58.03 Aligned_cols=42 Identities=17% Similarity=0.153 Sum_probs=37.8
Q ss_pred CCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeeccccc
Q 004721 419 DYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLI 460 (733)
Q Consensus 419 ~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L~ 460 (733)
..-+-|.++|.+|+..||+.||+|++--.||+|||+|-.++-
T Consensus 26 l~~~ss~~~y~~aL~~GcRcvElD~wdg~~~eP~V~HG~tlt 67 (258)
T cd08630 26 IGGPSSTEAYVRAFAQGCRCVELDCWEGPGGEPVIYHGHTLT 67 (258)
T ss_pred ccCcccHHHHHHHHHcCCcEEEEEeecCCCCCcEEeeCCccc
Confidence 455689999999999999999999999999999999987663
|
This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta3 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This family corresponds to the catalytic domain wh |
| >cd08623 PI-PLCc_beta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta1 | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.077 Score=54.61 Aligned_cols=41 Identities=15% Similarity=0.166 Sum_probs=36.0
Q ss_pred CCCccHHHHHHHHHHcCCCCcEEEeeeeecC--CCeEEEecCCCC
Q 004721 103 IFPDSSSIAYSLTLITSAPSVILWCDVQLTK--DEAGICFPDLKL 145 (733)
Q Consensus 103 ~~pENTl~af~~A~~~g~d~~~iE~DV~lTk--Dg~lVv~HD~~l 145 (733)
..-+-|.++|..|+..|+. .||+|+|=-. ||++||.|..|+
T Consensus 26 l~g~ss~e~y~~aL~~GcR--cvElD~wdG~~~~~ePiV~HG~tl 68 (258)
T cd08623 26 LAGNSSVEMYRQVLLSGCR--CVELDCWKGRTAEEEPVITHGFTM 68 (258)
T ss_pred cCCccCHHHHHHHHHcCCC--EEEEEeeCCCCCCCCCEEeeCCCc
Confidence 3456789999999999999 9999999876 689999999866
|
This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho |
| >cd08629 PI-PLCc_delta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta1 | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.033 Score=57.24 Aligned_cols=42 Identities=12% Similarity=0.114 Sum_probs=37.7
Q ss_pred CCCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeecccc
Q 004721 418 GDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINL 459 (733)
Q Consensus 418 ~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L 459 (733)
...-+-|.++|.+|+..||+.||+|++--.||+|||+|..++
T Consensus 25 Ql~~~ss~e~y~~aL~~GcRcvElD~wdg~~~eP~V~HG~tl 66 (258)
T cd08629 25 QLTGPSSTEAYIRALCKGCRCLELDCWDGPNQEPIIYHGYTF 66 (258)
T ss_pred ccCCccCHHHHHHHHHhCCcEEEEEeecCCCCCcEEeeCCCC
Confidence 345677899999999999999999999999999999998765
|
This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta1 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This subfamily corresponds to the catalytic domain |
| >cd08628 PI-PLCc_gamma2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma2 | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.031 Score=57.36 Aligned_cols=41 Identities=17% Similarity=0.144 Sum_probs=37.1
Q ss_pred CCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeecccc
Q 004721 419 DYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINL 459 (733)
Q Consensus 419 ~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L 459 (733)
..-+-|.++|..|+..||+.||+|++=-.||+|||+|..++
T Consensus 26 l~~~ss~~~y~~aL~~GcRcvElD~Wdg~~~eP~V~HG~t~ 66 (254)
T cd08628 26 LRSESSTEAYIRCLRMGCRCIELDCWDGPDGKPIIYHGWTR 66 (254)
T ss_pred eecCCCHHHHHHHHHcCCcEEEEEeecCCCCCeEEeeCCCc
Confidence 45577899999999999999999999999999999998765
|
This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozyme 2. PI-PLC is a signaling enzyme that hydrolyze the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain. The PLC catalytic core domain is a TIM barrel with tw |
| >cd08598 PI-PLC1c_yeast Catalytic domain of putative yeast phosphatidylinositide-specific phospholipases C | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.036 Score=56.17 Aligned_cols=41 Identities=20% Similarity=0.212 Sum_probs=37.0
Q ss_pred CCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeecccc
Q 004721 419 DYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINL 459 (733)
Q Consensus 419 ~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L 459 (733)
..-+-|.++|.+|+..||+.||+|++--.||.|||+|..++
T Consensus 26 l~~~ss~~~y~~aL~~GcRcvElD~wdg~~~ep~V~HG~t~ 66 (231)
T cd08598 26 LAGDSSVEGYIRALQRGCRCVEIDVWDGDDGEPVVTHGYTL 66 (231)
T ss_pred cCCccCHHHHHHHHHhCCcEEEEEeecCCCCCcEEeeCCCC
Confidence 45678999999999999999999999998999999998654
|
This family corresponds to the catalytic domain present in a group of putative phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) encoded by PLC1 genes from yeasts, which are homologs of the delta isoforms of mammalian PI-PLC in terms of overall sequence similarity and domain organization. Mammalian PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. The prototype of this CD is protein Plc1p encoded by PLC1 genes fro |
| >cd08593 PI-PLCc_delta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.034 Score=57.32 Aligned_cols=41 Identities=20% Similarity=0.212 Sum_probs=37.5
Q ss_pred CCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeecccc
Q 004721 419 DYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINL 459 (733)
Q Consensus 419 ~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L 459 (733)
..-+-|.++|.+|+..||+.||+|++--.||+|||+|..++
T Consensus 26 l~~~ss~~~y~~aL~~GcRcvElD~wdg~~~eP~v~HG~t~ 66 (257)
T cd08593 26 LKGPSSTEAYIRALKKGCRCVELDCWDGPDGEPIIYHGHTL 66 (257)
T ss_pred ccCCccHHHHHHHHHhCCcEEEEEeecCCCCCcEEeeCCcc
Confidence 46678999999999999999999999999999999998655
|
This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This CD corresponds to the catalytic domain which is |
| >cd08591 PI-PLCc_beta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.13 Score=52.94 Aligned_cols=41 Identities=20% Similarity=0.064 Sum_probs=36.6
Q ss_pred CCCccHHHHHHHHHHcCCCCcEEEeeeeecCC--CeEEEecCCCC
Q 004721 103 IFPDSSSIAYSLTLITSAPSVILWCDVQLTKD--EAGICFPDLKL 145 (733)
Q Consensus 103 ~~pENTl~af~~A~~~g~d~~~iE~DV~lTkD--g~lVv~HD~~l 145 (733)
..-+-|.++|..|+..|+. .||+||+=-.| |+|||+|-.|+
T Consensus 26 l~g~ss~e~y~~aL~~GcR--cvElD~Wdg~~~~~eP~V~HG~tl 68 (257)
T cd08591 26 FGGKSSVEMYRQVLLSGCR--CIELDCWDGKGEDEEPIITHGKTM 68 (257)
T ss_pred ccCcccHHHHHHHHHhCCc--EEEEEeecCCCCCCCCEEeeCCCC
Confidence 4457889999999999999 99999999885 99999998776
|
This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for homod |
| >cd08626 PI-PLCc_beta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta4 | Back alignment and domain information |
|---|
Probab=94.45 E-value=0.038 Score=56.77 Aligned_cols=41 Identities=15% Similarity=0.068 Sum_probs=36.6
Q ss_pred CCCCchHHHHHHHHHCCCCeeecCceeec--CCeEEEeecccc
Q 004721 419 DYPSCTNLAYQKAISDGVDFIDCPVQMSK--DGVPFCLSFINL 459 (733)
Q Consensus 419 ~~PENTl~Af~~A~~~Gad~iE~DV~lTk--Dgv~Vv~HD~~L 459 (733)
..-+-|.++|.+|+..||+.||+|++=-. ||.|||+|..++
T Consensus 26 l~~~ss~~~y~~aL~~GcRcvElD~wdg~~~~~eP~V~HG~tl 68 (257)
T cd08626 26 FGGKSSVEMYRQVLLAGCRCIELDCWDGKGEDQEPIITHGKAM 68 (257)
T ss_pred ccCCccHHHHHHHHHcCCcEEEEEecCCCCCCCCCEEeeCCCC
Confidence 45678999999999999999999999865 889999998766
|
This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 4. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho |
| >cd08599 PI-PLCc_plant Catalytic domain of plant phosphatidylinositide-specific phospholipases C | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.064 Score=54.33 Aligned_cols=41 Identities=12% Similarity=0.007 Sum_probs=36.7
Q ss_pred CCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCC
Q 004721 103 IFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKL 145 (733)
Q Consensus 103 ~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l 145 (733)
..-+-|.++|..|++.|+. .||+||+=..||+++|.|..++
T Consensus 26 l~~~ss~~~y~~aL~~GcR--cvElD~Wdg~~~ep~V~HG~t~ 66 (228)
T cd08599 26 LSSRSSTAPIIEALLRGCR--VIELDLWPGGRGDICVLHGGTL 66 (228)
T ss_pred cCCccCHHHHHHHHHhCCC--EEEEEeecCCCCCeEEEeCCCC
Confidence 3456788999999999999 9999999999999999998775
|
This family corresponds to the catalytic domain present in a group of phosphoinositide-specific phospholipases C (PI-PLC, EC 3.1.4.11) encoded by PLC genes from higher plants, which are homologs of mammalian PI-PLC in terms of overall sequence similarity and domain organization. Mammalian PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. The domain arrangement of plant PI-PLCs is structurally similar to the mammalian PLC-zeta isoform, whi |
| >cd08558 PI-PLCc_eukaryota Catalytic domain of eukaryotic phosphoinositide-specific phospholipase C and similar proteins | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.063 Score=54.28 Aligned_cols=41 Identities=20% Similarity=0.154 Sum_probs=37.8
Q ss_pred CCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCC
Q 004721 103 IFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKL 145 (733)
Q Consensus 103 ~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l 145 (733)
..-+-|.++|..|+..||. .||+||+=-.||+|||+|..++
T Consensus 26 l~~~Ss~~~y~~aL~~GcR--cvElD~wdg~~~eP~v~HG~t~ 66 (226)
T cd08558 26 LTGESSVEAYIRALLRGCR--CVELDCWDGPDGEPVVYHGHTL 66 (226)
T ss_pred cCCccCHHHHHHHHHhCCc--EEEEEeecCCCCCeEEeeCCCC
Confidence 4567899999999999999 9999999999999999998765
|
This family corresponds to the catalytic domain present in eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) and similar proteins. The higher eukaryotic PI-PLCs play a critical role in most signal transduction pathways, controlling numerous cellular events such as cell growth, proliferation, excitation and secretion. They strictly require Ca2+ for the catalytic activity. They display a clear preference towards the hydrolysis of the more highly phosphorylated membrane phospholipids PI-analogues, phosphatidylinositol 4,5-bisphosphate (PIP2) and phosphatidylinositol-4-phosphate (PIP), to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein ki |
| >cd08632 PI-PLCc_eta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta1 | Back alignment and domain information |
|---|
Probab=94.27 E-value=0.059 Score=55.07 Aligned_cols=40 Identities=15% Similarity=0.091 Sum_probs=36.7
Q ss_pred CCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCC
Q 004721 104 FPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKL 145 (733)
Q Consensus 104 ~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l 145 (733)
.-+-|.++|..|+..|+. .||+|||=-.||++||.|-.|+
T Consensus 27 ~~~ss~e~y~~aL~~GcR--cvElD~Wdg~~~eP~V~HG~Tl 66 (253)
T cd08632 27 LSQSKVDMYARVLQAGCR--CVEVDCWDGPDGEPVVHHGYTL 66 (253)
T ss_pred cCcccHHHHHHHHHcCCc--EEEEEeecCCCCCcEEeeCCCC
Confidence 446789999999999999 9999999999999999998776
|
This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding m |
| >cd08595 PI-PLCc_zeta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-zeta | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.058 Score=55.49 Aligned_cols=41 Identities=17% Similarity=0.118 Sum_probs=37.8
Q ss_pred CCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCC
Q 004721 103 IFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKL 145 (733)
Q Consensus 103 ~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l 145 (733)
..-+-|.++|..|+..|+. .||+||+=..||++||+|-.|+
T Consensus 26 l~~~ss~e~y~~aL~~GcR--cvElD~wdg~~~ep~v~HG~tl 66 (257)
T cd08595 26 LVGPSDLDGYVSALRKGCR--CLEIDCWDGADNEPVVYHGYTL 66 (257)
T ss_pred ccCcccHHHHHHHHHhCCc--EEEEEeecCCCCCcEEecCCCc
Confidence 4568889999999999999 9999999999999999998876
|
This family corresponds to the catalytic domain presenting in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-zeta isozyme. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-zeta represents a class of sperm-specific PI-PLC that has an N-terminal EF-hand domain, a PLC catalytic core domain, and a C-terminal C2 domain. The PLC catalytic core domain is a TIM barrel with two highly conserved regions (X and Y) |
| >cd08623 PI-PLCc_beta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta1 | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.052 Score=55.83 Aligned_cols=41 Identities=7% Similarity=0.111 Sum_probs=36.2
Q ss_pred CCCCchHHHHHHHHHCCCCeeecCceeec--CCeEEEeecccc
Q 004721 419 DYPSCTNLAYQKAISDGVDFIDCPVQMSK--DGVPFCLSFINL 459 (733)
Q Consensus 419 ~~PENTl~Af~~A~~~Gad~iE~DV~lTk--Dgv~Vv~HD~~L 459 (733)
..-+-|.++|.+|+..||+.||+|++=-. ||.|||+|..++
T Consensus 26 l~g~ss~e~y~~aL~~GcRcvElD~wdG~~~~~ePiV~HG~tl 68 (258)
T cd08623 26 LAGNSSVEMYRQVLLSGCRCVELDCWKGRTAEEEPVITHGFTM 68 (258)
T ss_pred cCCccCHHHHHHHHHcCCCEEEEEeeCCCCCCCCCEEeeCCCc
Confidence 44577899999999999999999999876 689999998765
|
This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho |
| >cd08630 PI-PLCc_delta3 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta3 | Back alignment and domain information |
|---|
Probab=94.04 E-value=0.067 Score=55.13 Aligned_cols=41 Identities=17% Similarity=0.059 Sum_probs=37.3
Q ss_pred CCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCC
Q 004721 103 IFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKL 145 (733)
Q Consensus 103 ~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l 145 (733)
..-+-|.++|..|+..|+. .||+||+=..||++||+|-.|+
T Consensus 26 l~~~ss~~~y~~aL~~GcR--cvElD~wdg~~~eP~V~HG~tl 66 (258)
T cd08630 26 IGGPSSTEAYVRAFAQGCR--CVELDCWEGPGGEPVIYHGHTL 66 (258)
T ss_pred ccCcccHHHHHHHHHcCCc--EEEEEeecCCCCCcEEeeCCcc
Confidence 3456789999999999999 9999999999999999998876
|
This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta3 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This family corresponds to the catalytic domain wh |
| >cd08624 PI-PLCc_beta2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta2 | Back alignment and domain information |
|---|
Probab=94.03 E-value=0.053 Score=55.85 Aligned_cols=42 Identities=12% Similarity=0.112 Sum_probs=36.8
Q ss_pred CCCCCchHHHHHHHHHCCCCeeecCceeec--CCeEEEeecccc
Q 004721 418 GDYPSCTNLAYQKAISDGVDFIDCPVQMSK--DGVPFCLSFINL 459 (733)
Q Consensus 418 ~~~PENTl~Af~~A~~~Gad~iE~DV~lTk--Dgv~Vv~HD~~L 459 (733)
...-+-|.++|.+|+..||+.||+|++=-. ||.|||+|..++
T Consensus 25 Ql~~~ss~e~y~~aL~~GcRcvElD~wdg~~~~~ePvV~HG~tl 68 (261)
T cd08624 25 QFSGLSSPEMYRQVLLSGCRCVELDCWKGKPPDEEPIITHGFTM 68 (261)
T ss_pred ccCCccCHHHHHHHHHcCCcEEEEEecCCCCCCCCCEEeeCCCc
Confidence 345678999999999999999999999763 789999999876
|
This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 2. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho |
| >cd08628 PI-PLCc_gamma2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma2 | Back alignment and domain information |
|---|
Probab=93.91 E-value=0.074 Score=54.69 Aligned_cols=40 Identities=20% Similarity=0.070 Sum_probs=36.6
Q ss_pred CCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCC
Q 004721 104 FPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKL 145 (733)
Q Consensus 104 ~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l 145 (733)
.-+-|.++|..|+..||. .||+|||=-.||+|||.|..++
T Consensus 27 ~~~ss~~~y~~aL~~GcR--cvElD~Wdg~~~eP~V~HG~t~ 66 (254)
T cd08628 27 RSESSTEAYIRCLRMGCR--CIELDCWDGPDGKPIIYHGWTR 66 (254)
T ss_pred ecCCCHHHHHHHHHcCCc--EEEEEeecCCCCCeEEeeCCCc
Confidence 446688999999999999 9999999999999999998876
|
This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozyme 2. PI-PLC is a signaling enzyme that hydrolyze the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain. The PLC catalytic core domain is a TIM barrel with tw |
| >cd08629 PI-PLCc_delta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta1 | Back alignment and domain information |
|---|
Probab=93.84 E-value=0.08 Score=54.42 Aligned_cols=41 Identities=20% Similarity=0.133 Sum_probs=37.3
Q ss_pred CCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCC
Q 004721 103 IFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKL 145 (733)
Q Consensus 103 ~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l 145 (733)
..-+-|.++|..|+..|+. .||+||+=-.||+|||+|..|+
T Consensus 26 l~~~ss~e~y~~aL~~GcR--cvElD~wdg~~~eP~V~HG~tl 66 (258)
T cd08629 26 LTGPSSTEAYIRALCKGCR--CLELDCWDGPNQEPIIYHGYTF 66 (258)
T ss_pred cCCccCHHHHHHHHHhCCc--EEEEEeecCCCCCcEEeeCCCC
Confidence 4456789999999999999 9999999999999999998876
|
This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta1 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This subfamily corresponds to the catalytic domain |
| >cd08598 PI-PLC1c_yeast Catalytic domain of putative yeast phosphatidylinositide-specific phospholipases C | Back alignment and domain information |
|---|
Probab=93.70 E-value=0.092 Score=53.26 Aligned_cols=41 Identities=22% Similarity=0.112 Sum_probs=37.1
Q ss_pred CCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCC
Q 004721 103 IFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKL 145 (733)
Q Consensus 103 ~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l 145 (733)
..-+-|.++|..|+..||. .||+||+=-.||+|||.|-.++
T Consensus 26 l~~~ss~~~y~~aL~~GcR--cvElD~wdg~~~ep~V~HG~t~ 66 (231)
T cd08598 26 LAGDSSVEGYIRALQRGCR--CVEIDVWDGDDGEPVVTHGYTL 66 (231)
T ss_pred cCCccCHHHHHHHHHhCCc--EEEEEeecCCCCCcEEeeCCCC
Confidence 3457889999999999999 9999999999999999998766
|
This family corresponds to the catalytic domain present in a group of putative phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) encoded by PLC1 genes from yeasts, which are homologs of the delta isoforms of mammalian PI-PLC in terms of overall sequence similarity and domain organization. Mammalian PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. The prototype of this CD is protein Plc1p encoded by PLC1 genes fro |
| >cd08591 PI-PLCc_beta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta | Back alignment and domain information |
|---|
Probab=93.68 E-value=0.067 Score=55.00 Aligned_cols=41 Identities=12% Similarity=0.045 Sum_probs=36.7
Q ss_pred CCCCchHHHHHHHHHCCCCeeecCceeecC--CeEEEeecccc
Q 004721 419 DYPSCTNLAYQKAISDGVDFIDCPVQMSKD--GVPFCLSFINL 459 (733)
Q Consensus 419 ~~PENTl~Af~~A~~~Gad~iE~DV~lTkD--gv~Vv~HD~~L 459 (733)
..-+-|.++|.+|+..||+.||+|++=-.| |.|||+|-.++
T Consensus 26 l~g~ss~e~y~~aL~~GcRcvElD~Wdg~~~~~eP~V~HG~tl 68 (257)
T cd08591 26 FGGKSSVEMYRQVLLSGCRCIELDCWDGKGEDEEPIITHGKTM 68 (257)
T ss_pred ccCcccHHHHHHHHHhCCcEEEEEeecCCCCCCCCEEeeCCCC
Confidence 456788999999999999999999999875 99999998766
|
This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for homod |
| >cd08625 PI-PLCc_beta3 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta3 | Back alignment and domain information |
|---|
Probab=93.27 E-value=0.086 Score=54.49 Aligned_cols=42 Identities=12% Similarity=0.111 Sum_probs=36.5
Q ss_pred CCCCCchHHHHHHHHHCCCCeeecCceee--cCCeEEEeecccc
Q 004721 418 GDYPSCTNLAYQKAISDGVDFIDCPVQMS--KDGVPFCLSFINL 459 (733)
Q Consensus 418 ~~~PENTl~Af~~A~~~Gad~iE~DV~lT--kDgv~Vv~HD~~L 459 (733)
...-+-|.+||..|+..||+.||+|++=- .|+.|||+|..++
T Consensus 25 Ql~~~ss~e~y~~aL~~GcRcvElD~wdg~~~~~eP~v~Hg~t~ 68 (258)
T cd08625 25 QLTGLSSVEMYRQVLLTGCRCIELDCWKGRPPEEEPFITHGFTM 68 (258)
T ss_pred ccCCccCHHHHHHHHHcCCCEEEEEecCCCCCCCCCEEeeCCcc
Confidence 34568889999999999999999999975 3589999999775
|
This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 3. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho |
| >KOG1264 consensus Phospholipase C [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.09 E-value=0.068 Score=61.60 Aligned_cols=49 Identities=18% Similarity=0.107 Sum_probs=42.4
Q ss_pred EecCCC---CCCCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeecccc
Q 004721 411 ISKNGA---SGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINL 459 (733)
Q Consensus 411 IaHRG~---~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L 459 (733)
.+|.-+ -...-|.|++||.+|+.+||..||+|-+=-.||.|||+|..|+
T Consensus 322 SSHNTYLTGDQlrSESSleaYar~LrMGCRCIELDCWdGpd~~pvIyHG~T~ 373 (1267)
T KOG1264|consen 322 SSHNTYLTGDQLRSESSLEAYARCLRMGCRCIELDCWDGPDGKPVIYHGHTR 373 (1267)
T ss_pred ccCcceecccccccccCHHHHHHHHHhCCeEEEeecccCCCCCceEEeccce
Confidence 445543 2356799999999999999999999999999999999999876
|
|
| >cd08624 PI-PLCc_beta2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta2 | Back alignment and domain information |
|---|
Probab=92.95 E-value=0.13 Score=53.14 Aligned_cols=42 Identities=21% Similarity=0.125 Sum_probs=36.8
Q ss_pred CCCCccHHHHHHHHHHcCCCCcEEEeeeeecC--CCeEEEecCCCC
Q 004721 102 GIFPDSSSIAYSLTLITSAPSVILWCDVQLTK--DEAGICFPDLKL 145 (733)
Q Consensus 102 ~~~pENTl~af~~A~~~g~d~~~iE~DV~lTk--Dg~lVv~HD~~l 145 (733)
...-+-|.++|..|+..|+. .||+|||=-. ||++||.|..|+
T Consensus 25 Ql~~~ss~e~y~~aL~~GcR--cvElD~wdg~~~~~ePvV~HG~tl 68 (261)
T cd08624 25 QFSGLSSPEMYRQVLLSGCR--CVELDCWKGKPPDEEPIITHGFTM 68 (261)
T ss_pred ccCCccCHHHHHHHHHcCCc--EEEEEecCCCCCCCCCEEeeCCCc
Confidence 34457799999999999999 9999999763 789999999887
|
This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 2. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho |
| >cd08625 PI-PLCc_beta3 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta3 | Back alignment and domain information |
|---|
Probab=91.75 E-value=0.22 Score=51.58 Aligned_cols=41 Identities=17% Similarity=0.089 Sum_probs=36.1
Q ss_pred CCCccHHHHHHHHHHcCCCCcEEEeeeeec--CCCeEEEecCCCC
Q 004721 103 IFPDSSSIAYSLTLITSAPSVILWCDVQLT--KDEAGICFPDLKL 145 (733)
Q Consensus 103 ~~pENTl~af~~A~~~g~d~~~iE~DV~lT--kDg~lVv~HD~~l 145 (733)
..-+-|.+||..|+..||. .||+||+=- .|+++||.|..|+
T Consensus 26 l~~~ss~e~y~~aL~~GcR--cvElD~wdg~~~~~eP~v~Hg~t~ 68 (258)
T cd08625 26 LTGLSSVEMYRQVLLTGCR--CIELDCWKGRPPEEEPFITHGFTM 68 (258)
T ss_pred cCCccCHHHHHHHHHcCCC--EEEEEecCCCCCCCCCEEeeCCcc
Confidence 4567889999999999999 999999976 3689999999876
|
This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 3. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho |
| >PLN02230 phosphoinositide phospholipase C 4 | Back alignment and domain information |
|---|
Probab=89.05 E-value=0.39 Score=55.51 Aligned_cols=54 Identities=13% Similarity=0.146 Sum_probs=43.4
Q ss_pred ceEEecCCC---CCCCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeecccccc
Q 004721 408 LLVISKNGA---SGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLIN 461 (733)
Q Consensus 408 ~~iIaHRG~---~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L~r 461 (733)
.+-.+|.-+ ....-+-|.++|.+|+..||+.||+|++--.+|.|||+|..++-.
T Consensus 125 fI~sSHNTYL~g~Ql~~~ss~e~y~~aL~~GcRcvElD~wdg~~~ep~v~HG~t~t~ 181 (598)
T PLN02230 125 FIFTGHNSYLTGNQLSSNCSELPIADALRRGVRVVELDLWPRGTDDVCVKHGRTLTK 181 (598)
T ss_pred eeecccCccccCCcccCccCHHHHHHHHHcCCcEEEEeccCCCCCCcEEeeCCCCcC
Confidence 344566642 244567789999999999999999999988889999999987743
|
|
| >KOG1264 consensus Phospholipase C [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.38 E-value=0.43 Score=55.35 Aligned_cols=50 Identities=14% Similarity=0.080 Sum_probs=43.6
Q ss_pred EEEeCCC---CCCCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCC
Q 004721 94 VVARGGF---SGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKL 145 (733)
Q Consensus 94 viaHRG~---~~~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l 145 (733)
-..|--+ -...-|.|++||..|+.+||. .||+|.+=-.||.+|++|-.|+
T Consensus 321 sSSHNTYLTGDQlrSESSleaYar~LrMGCR--CIELDCWdGpd~~pvIyHG~T~ 373 (1267)
T KOG1264|consen 321 SSSHNTYLTGDQLRSESSLEAYARCLRMGCR--CIELDCWDGPDGKPVIYHGHTR 373 (1267)
T ss_pred eccCcceecccccccccCHHHHHHHHHhCCe--EEEeecccCCCCCceEEeccce
Confidence 3456553 245789999999999999999 9999999999999999999986
|
|
| >PLN02228 Phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=86.52 E-value=0.66 Score=53.40 Aligned_cols=52 Identities=13% Similarity=0.053 Sum_probs=40.7
Q ss_pred eEEecCCC---CCCCCCchHHHHHHHHHCCCCeeecCceeecCCe-EEEeeccccc
Q 004721 409 LVISKNGA---SGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGV-PFCLSFINLI 460 (733)
Q Consensus 409 ~iIaHRG~---~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv-~Vv~HD~~L~ 460 (733)
+-.+|.-+ ....-+-|.++|.+|+..||..||+|++=-.||. |||+|..++-
T Consensus 117 I~SSHNTYL~g~Ql~~~ss~e~y~~aL~~GcRcvElD~wdg~~~~~p~v~Hg~t~t 172 (567)
T PLN02228 117 VYTGHNSYLTGNQVNSRSSVEPIVQALRKGVKVIELDLWPNPSGNAAEVRHGRTLT 172 (567)
T ss_pred eecccCccccCCcccCccCHHHHHHHHHcCCcEEEEEeccCCCCCCCEEEeCCccc
Confidence 34455442 2345678999999999999999999999766665 8999997764
|
|
| >KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=85.86 E-value=0.85 Score=53.14 Aligned_cols=57 Identities=16% Similarity=0.114 Sum_probs=46.1
Q ss_pred cCCcceEEecCCC---CCCCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeeccccc
Q 004721 404 KSANLLVISKNGA---SGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLI 460 (733)
Q Consensus 404 ~~~~~~iIaHRG~---~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L~ 460 (733)
.+.-.+--+|.-+ ....-+-|+++|..|++.||..||+|++--.+|.|||+|-.|+-
T Consensus 295 LsHYFI~SSHNTYLtg~Ql~g~sSvegyI~ALk~GcR~vElD~Wdg~~~epvV~HG~TlT 354 (746)
T KOG0169|consen 295 LSHYFISSSHNTYLTGDQLGGPSSVEGYIRALKKGCRCVELDCWDGPNGEPVVYHGHTLT 354 (746)
T ss_pred chhheEeccccceecccccCCccccHHHHHHHHhCCeEEEEecccCCCCCeeEecCcccc
Confidence 3334455667653 23456889999999999999999999999999999999998764
|
|
| >PLN02230 phosphoinositide phospholipase C 4 | Back alignment and domain information |
|---|
Probab=85.78 E-value=0.89 Score=52.62 Aligned_cols=51 Identities=8% Similarity=0.062 Sum_probs=42.5
Q ss_pred EEEEeCCC---CCCCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCC
Q 004721 93 FVVARGGF---SGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKL 145 (733)
Q Consensus 93 ~viaHRG~---~~~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l 145 (733)
+-.+|.-+ ....-+-|.++|..|+..|+. .||+|+|--.+|++||.|..|+
T Consensus 126 I~sSHNTYL~g~Ql~~~ss~e~y~~aL~~GcR--cvElD~wdg~~~ep~v~HG~t~ 179 (598)
T PLN02230 126 IFTGHNSYLTGNQLSSNCSELPIADALRRGVR--VVELDLWPRGTDDVCVKHGRTL 179 (598)
T ss_pred eecccCccccCCcccCccCHHHHHHHHHcCCc--EEEEeccCCCCCCcEEeeCCCC
Confidence 34577743 344567789999999999999 9999999888899999999887
|
|
| >PLN02222 phosphoinositide phospholipase C 2 | Back alignment and domain information |
|---|
Probab=84.66 E-value=2.8 Score=48.55 Aligned_cols=51 Identities=12% Similarity=0.155 Sum_probs=39.7
Q ss_pred EEEEeCCC---CCCCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCe-EEEecCCCC
Q 004721 93 FVVARGGF---SGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEA-GICFPDLKL 145 (733)
Q Consensus 93 ~viaHRG~---~~~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~-lVv~HD~~l 145 (733)
+-.+|.-+ ....-+-|.++|..|+..|+. .||+|+|=-.||. ++|+|-.||
T Consensus 114 I~SSHNTYL~g~Ql~~~ss~~~y~~aL~~GcR--cvElD~wdg~~~~~~~v~HG~tl 168 (581)
T PLN02222 114 IFTGHNSYLTGNQLSSDCSEVPIIDALKKGVR--VIELDIWPNSDKDDIDVLHGMTL 168 (581)
T ss_pred eecccCccccCCcccCccCHHHHHHHHHcCCc--EEEEEeccCCCCCCCeEeeCCcc
Confidence 34567743 344567888999999999999 9999999766665 579997665
|
|
| >PLN02952 phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=84.15 E-value=1 Score=52.20 Aligned_cols=53 Identities=17% Similarity=0.197 Sum_probs=41.7
Q ss_pred ceEEecCCC---CCCCCCchHHHHHHHHHCCCCeeecCceeecCC-eEEEeeccccc
Q 004721 408 LLVISKNGA---SGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDG-VPFCLSFINLI 460 (733)
Q Consensus 408 ~~iIaHRG~---~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDg-v~Vv~HD~~L~ 460 (733)
.+-.+|.-+ ....-+-|.++|.+|+..||+.||+|++--.|| .|||+|-.++-
T Consensus 133 fI~SSHNTYL~g~Ql~~~ss~~~y~~aL~~GcRcvElD~wdg~~~~~p~v~Hg~t~t 189 (599)
T PLN02952 133 FIYTGHNSYLTGNQLSSDCSEVPIVKALQRGVRVIELDLWPGSTKDEILVLHGRTLT 189 (599)
T ss_pred eeeccccccccCCccCCcCCHHHHHHHHHcCCcEEEEEeecCCCCCCCEEEeCCccc
Confidence 344566642 345668899999999999999999999977765 48999998764
|
|
| >KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=82.44 E-value=1.2 Score=51.90 Aligned_cols=41 Identities=15% Similarity=0.029 Sum_probs=38.5
Q ss_pred CCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCC
Q 004721 103 IFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKL 145 (733)
Q Consensus 103 ~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l 145 (733)
..-+-|+.+|-.|++.||. .||+|++--.+|.+||.|-.|+
T Consensus 313 l~g~sSvegyI~ALk~GcR--~vElD~Wdg~~~epvV~HG~Tl 353 (746)
T KOG0169|consen 313 LGGPSSVEGYIRALKKGCR--CVELDCWDGPNGEPVVYHGHTL 353 (746)
T ss_pred cCCccccHHHHHHHHhCCe--EEEEecccCCCCCeeEecCccc
Confidence 4568899999999999999 9999999999999999999987
|
|
| >PLN02228 Phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=82.25 E-value=1.5 Score=50.44 Aligned_cols=51 Identities=10% Similarity=0.018 Sum_probs=41.1
Q ss_pred EEEEeCCC---CCCCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCe-EEEecCCCC
Q 004721 93 FVVARGGF---SGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEA-GICFPDLKL 145 (733)
Q Consensus 93 ~viaHRG~---~~~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~-lVv~HD~~l 145 (733)
+-.+|.-+ ....-+-|.++|..|+..|+. .||+|+|=-.||. +||+|..|+
T Consensus 117 I~SSHNTYL~g~Ql~~~ss~e~y~~aL~~GcR--cvElD~wdg~~~~~p~v~Hg~t~ 171 (567)
T PLN02228 117 VYTGHNSYLTGNQVNSRSSVEPIVQALRKGVK--VIELDLWPNPSGNAAEVRHGRTL 171 (567)
T ss_pred eecccCccccCCcccCccCHHHHHHHHHcCCc--EEEEEeccCCCCCCCEEEeCCcc
Confidence 34567653 234667899999999999999 9999999766665 899999876
|
|
| >PLN02591 tryptophan synthase | Back alignment and domain information |
|---|
Probab=81.62 E-value=17 Score=37.65 Aligned_cols=195 Identities=21% Similarity=0.292 Sum_probs=98.4
Q ss_pred CCCchHHHHHHHHHCCCCeeecCceee---cCCeEEE-eeccccccccccCCCcCCCcccccccccccCcccccccCHHH
Q 004721 420 YPSCTNLAYQKAISDGVDFIDCPVQMS---KDGVPFC-LSFINLINSTNAAQSKFNSITTTIPEIMAGSGIFSFSLIWDE 495 (733)
Q Consensus 420 ~PENTl~Af~~A~~~Gad~iE~DV~lT---kDgv~Vv-~HD~~L~rtt~v~~~~~~~r~~~~~~~~~~~g~~i~d~T~~E 495 (733)
-+|-|+...+...+.|||.||+-+=.| .||-.|- .|...|.+ | .--+-.++.
T Consensus 14 ~~e~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~-----------------------G-~~~~~~~~~ 69 (250)
T PLN02591 14 DLDTTAEALRLLDACGADVIELGVPYSDPLADGPVIQAAATRALEK-----------------------G-TTLDSVISM 69 (250)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHc-----------------------C-CCHHHHHHH
Confidence 346778878878899999999988664 2332221 11111111 1 111233455
Q ss_pred HhccCccccCCCccccccCCcCCCCCccccCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCCcHHHHHHHHHHHcCCC
Q 004721 496 IQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEALGNAGYN 575 (733)
Q Consensus 496 L~~L~~~~~~~~~~~~~~~~~~~~g~~~IptLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~v~~~l~~~~~~ 575 (733)
+++++.....|.. --.+-|+-|+ .-++.+++.+++.+ .-++.|- .-+. +-.+.+.+..+++|+.
T Consensus 70 ~~~~r~~~~~p~i-lm~Y~N~i~~-----~G~~~F~~~~~~aG-v~Gviip-DLP~--------ee~~~~~~~~~~~gl~ 133 (250)
T PLN02591 70 LKEVAPQLSCPIV-LFTYYNPILK-----RGIDKFMATIKEAG-VHGLVVP-DLPL--------EETEALRAEAAKNGIE 133 (250)
T ss_pred HHHHhcCCCCCEE-EEecccHHHH-----hHHHHHHHHHHHcC-CCEEEeC-CCCH--------HHHHHHHHHHHHcCCe
Confidence 5555421111200 0011122111 35788888888762 2244432 1121 1234567777888886
Q ss_pred CCCCceEEEEeCCHH--HHHHHHhc-cCceEEEEeec-ccchhhhHHHHHHHHHHhHhcCCCcccccCCccccccchHHH
Q 004721 576 KQTALKVMIQSTDSS--VLMKLREK-TSYELVYKVKE-NIRDALNQTIEDIKKFADSVVLSKESVYPLNSAFITSATDIV 651 (733)
Q Consensus 576 ~~~~~~vii~Sfd~~--~L~~lk~~-p~~~~~~l~~~-~~~~~~~~~l~~i~~~a~~i~~~~~~i~~~~~~~l~~~~~~v 651 (733)
.|.+.|.+.. -++.+.+. +.+- |++.. ... . ...-.+ ....+++
T Consensus 134 -----~I~lv~Ptt~~~ri~~ia~~~~gFI--Y~Vs~~GvT---G----------------~~~~~~------~~~~~~i 181 (250)
T PLN02591 134 -----LVLLTTPTTPTERMKAIAEASEGFV--YLVSSTGVT---G----------------ARASVS------GRVESLL 181 (250)
T ss_pred -----EEEEeCCCCCHHHHHHHHHhCCCcE--EEeeCCCCc---C----------------CCcCCc------hhHHHHH
Confidence 7777766653 46666666 5553 33321 000 0 000000 0114556
Q ss_pred HHHHHC-CCcEEE-EecCCcccccccccCCChHHHHHHHHhhcCcCEEEeC
Q 004721 652 QRLQSF-KLPVYV-ETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITE 700 (733)
Q Consensus 652 ~~~~~~-Gl~v~~-wTvn~~~~~~~~~~~~d~~~e~~~~l~~~GVdgIiTD 700 (733)
+.+++. +++|.+ ..+++.+ ++.+++ +.|+||++.=
T Consensus 182 ~~vk~~~~~Pv~vGFGI~~~e-------------~v~~~~-~~GADGvIVG 218 (250)
T PLN02591 182 QELKEVTDKPVAVGFGISKPE-------------HAKQIA-GWGADGVIVG 218 (250)
T ss_pred HHHHhcCCCceEEeCCCCCHH-------------HHHHHH-hcCCCEEEEC
Confidence 666663 666654 3556554 677775 9999999863
|
|
| >PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family | Back alignment and domain information |
|---|
Probab=80.95 E-value=11 Score=36.88 Aligned_cols=142 Identities=18% Similarity=0.247 Sum_probs=89.6
Q ss_pred ccccCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCCcHHHHHHHHHHHcCCCCCCCceEEEEeCCHHHHHHHHhc--c
Q 004721 522 GKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEALGNAGYNKQTALKVMIQSTDSSVLMKLREK--T 599 (733)
Q Consensus 522 ~~IptLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~vii~Sfd~~~L~~lk~~--p 599 (733)
..|.+|+++.+.+++.++ .+++.+.--. |..--+.-++.|.++.-. + =+.|-.+..+++.|+. .
T Consensus 28 g~I~~l~~~v~~~~~~gK--~vfVHiDli~------Gl~~D~~~i~~L~~~~~~----d--GIISTk~~~i~~Ak~~gl~ 93 (175)
T PF04309_consen 28 GDIGNLKDIVKRLKAAGK--KVFVHIDLIE------GLSRDEAGIEYLKEYGKP----D--GIISTKSNLIKRAKKLGLL 93 (175)
T ss_dssp EECCCHHHHHHHHHHTT---EEEEECCGEE------TB-SSHHHHHHHHHTT------S--EEEESSHHHHHHHHHTT-E
T ss_pred CcHHHHHHHHHHHHHcCC--EEEEEehhcC------CCCCCHHHHHHHHHcCCC----c--EEEeCCHHHHHHHHHcCCE
Confidence 579999999999998854 5777776321 111124567888887633 1 3667889999999988 6
Q ss_pred CceEEEEeecccchhhhHHHHHHHHHHhHhcCCCcccccCCccccccchHHHHHHHH-CCCcEEEEec-CCccccccccc
Q 004721 600 SYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNSAFITSATDIVQRLQS-FKLPVYVETF-SNEFVSQAWDF 677 (733)
Q Consensus 600 ~~~~~~l~~~~~~~~~~~~l~~i~~~a~~i~~~~~~i~~~~~~~l~~~~~~v~~~~~-~Gl~v~~wTv-n~~~~~~~~~~ 677 (733)
.+...|+++.. +++...+......|..-.+.|.. -+.+++.+++ .+.++.+-++ .+++
T Consensus 94 tIqRiFliDS~-------al~~~~~~i~~~~PD~vEilPg~------~p~vi~~i~~~~~~PiIAGGLI~~~e------- 153 (175)
T PF04309_consen 94 TIQRIFLIDSS-------ALETGIKQIEQSKPDAVEILPGV------MPKVIKKIREETNIPIIAGGLIRTKE------- 153 (175)
T ss_dssp EEEEEE-SSHH-------HHHHHHHHHHHHT-SEEEEESCC------HHHHHCCCCCCCSS-EEEESS--SHH-------
T ss_pred EEEEeeeecHH-------HHHHHHHHHhhcCCCEEEEchHH------HHHHHHHHHHhcCCCEEeecccCCHH-------
Confidence 77778887652 23333333444556555555531 2567776554 4678877765 4444
Q ss_pred CCChHHHHHHHHhhcCcCEEEeCChHH
Q 004721 678 FSDPTVEINTYYEGAGIDGVITEFPMT 704 (733)
Q Consensus 678 ~~d~~~e~~~~l~~~GVdgIiTD~P~~ 704 (733)
++.+.+ +.|+++|.|-.|+.
T Consensus 154 ------~v~~al-~aGa~aVSTS~~~L 173 (175)
T PF04309_consen 154 ------DVEEAL-KAGADAVSTSNKEL 173 (175)
T ss_dssp ------HHHHHC-CTTCEEEEE--HHH
T ss_pred ------HHHHHH-HcCCEEEEcCChHh
Confidence 788897 99999999988764
|
Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G. |
| >PLN02222 phosphoinositide phospholipase C 2 | Back alignment and domain information |
|---|
Probab=80.14 E-value=1.7 Score=50.35 Aligned_cols=54 Identities=17% Similarity=0.213 Sum_probs=40.9
Q ss_pred ceEEecCCC---CCCCCCchHHHHHHHHHCCCCeeecCceeecCCe-EEEeecccccc
Q 004721 408 LLVISKNGA---SGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGV-PFCLSFINLIN 461 (733)
Q Consensus 408 ~~iIaHRG~---~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv-~Vv~HD~~L~r 461 (733)
.+-.+|.-+ ....-+-|.++|.+|+..||+.||+|++--.||. ++|+|-.++-.
T Consensus 113 fI~SSHNTYL~g~Ql~~~ss~~~y~~aL~~GcRcvElD~wdg~~~~~~~v~HG~tlt~ 170 (581)
T PLN02222 113 FIFTGHNSYLTGNQLSSDCSEVPIIDALKKGVRVIELDIWPNSDKDDIDVLHGMTLTT 170 (581)
T ss_pred eeecccCccccCCcccCccCHHHHHHHHHcCCcEEEEEeccCCCCCCCeEeeCCcccC
Confidence 344566642 2345678899999999999999999999766665 57999877643
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 733 | ||||
| 1ydy_A | 356 | Crystal Structure Of Periplasmic Glycerophosphodies | 2e-04 | ||
| 1t8q_A | 336 | Structural Genomics, Crystal Structure Of Glyceroph | 2e-04 |
| >pdb|1YDY|A Chain A, Crystal Structure Of Periplasmic Glycerophosphodiester Phosphodiesterase From Escherichia Coli Length = 356 | Back alignment and structure |
|
| >pdb|1T8Q|A Chain A, Structural Genomics, Crystal Structure Of Glycerophosphoryl Diester Phosphodiesterase From E. Coli Length = 336 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1ydy_A Glycerophosphoryl diester phosphodiesterase; structural genomics, PSI, protein structu initiative; 1.70A {Escherichia coli} SCOP: c.1.18.3 PDB: 1t8q_A Length = 356 | Back alignment and structure |
|---|
Score = 120 bits (301), Expect = 1e-29
Identities = 65/343 (18%), Positives = 127/343 (37%), Gaps = 45/343 (13%)
Query: 402 ASKSANLLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLIN 461
A+ S +VI+ GASG P T A A + G D+++ + M+KD L L
Sbjct: 25 AADSNEKIVIAHRGASGYLPEHTLPAKAMAYAQGADYLEQDLVMTKDDNLVVLHDHYLDR 84
Query: 462 STNAAQSKFNSITTTIPEIMAGSGIFSFSLIWDEIQTL-----IPQISNPYFKFKLFRNP 516
T+ A + G ++ DEI++L + + R P
Sbjct: 85 VTDVADRFPDRARKD------GRY-YAIDFTLDEIKSLKFTEGFDIENGKKVQTYPGRFP 137
Query: 517 KNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAV---YLAEKQGMSVTNSVMEALGNAG 573
K+ + + +E + N +G I I + + ++G + +E L G
Sbjct: 138 MGKSDFRVHTFEEEIEFVQGLNHSTGKNIGIYPEIKAPWFHHQEGKDIAAKTLEVLKKYG 197
Query: 574 YNKQTALKVMIQSTDSSVLMKLREKTSYELVYKVKENIRDALNQT--------------- 618
Y + KV +Q D+ L +++ + ++ ++ A
Sbjct: 198 YTGKDD-KVYLQCFDADELKRIKNELEPKMGMELNLVQLIAYTDWNETQQKQPDGSWVNY 256
Query: 619 ----------IEDIKKFADSVVLSKESVYPLNSAFITSA-TDIVQRLQSFKLPVYVETFS 667
++ + ++AD + + S T +VQ Q KL V+ T
Sbjct: 257 NYDWMFKPGAMKQVAEYADGIGPDYHMLIEETSQPGNIKLTGMVQDAQQNKLVVHPYTVR 316
Query: 668 NEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPMTAARYRS 710
++ + ++ D + Y AG++G+ T+FP A ++ +
Sbjct: 317 SD---KLPEYTPDVNQLYDALYNKAGVNGLFTDFPDKAVKFLN 356
|
| >1ydy_A Glycerophosphoryl diester phosphodiesterase; structural genomics, PSI, protein structu initiative; 1.70A {Escherichia coli} SCOP: c.1.18.3 PDB: 1t8q_A Length = 356 | Back alignment and structure |
|---|
Score = 95.8 bits (238), Expect = 2e-21
Identities = 60/364 (16%), Positives = 122/364 (33%), Gaps = 52/364 (14%)
Query: 68 GVIAQVSAQGSNATSRWQTLTGDPPFVVA-RGGFSGIFPDSSSIAYSLTLITSAPSVILW 126
+ + S + V+A RG SG P+ + A ++ A L
Sbjct: 7 NLSMAIMMSTIVMGSSAMAADSNEKIVIAHRGA-SGYLPEHTLPAKAMAYAQGAD--YLE 63
Query: 127 CDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPGWFSIDYTLNDL---- 182
D+ +TKD+ + D LD +++A F + + +++ID+TL+++
Sbjct: 64 QDLVMTKDDNLVVLHDHYLDRVTDVADRFPDRAR-------KDGRYYAIDFTLDEIKSLK 116
Query: 183 ------SNIILNQGVYSRTDKFDGNGFQILTVQDM--------ARQIKPPGLWLNIQHDA 228
Y + F++ T ++ K G++ I+
Sbjct: 117 FTEGFDIENGKKVQTYPGRFPMGKSDFRVHTFEEEIEFVQGLNHSTGKNIGIYPEIKAPW 176
Query: 229 FYAQHNLSMRSFVLSVSRSVVVN------YISSPEVNFLRSIAARFRPSMTKLVFRFLGK 282
F+ Q + + L V + Y+ + + L+ I P M +
Sbjct: 177 FHHQEGKDIAAKTLEVLKKYGYTGKDDKVYLQCFDADELKRIKNELEPKMGMELNLVQLI 236
Query: 283 SEIEP-----------TTNQTYGSLLK--NLTFIKTFASGILVPKDYIWPVDESLYLLPH 329
+ + N Y + K + + +A GI + +
Sbjct: 237 AYTDWNETQQKQPDGSWVNYNYDWMFKPGAMKQVAEYADGIGPDYHMLIEETSQPGNIKL 296
Query: 330 TTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPS 389
T +V DA + +L V +D + + L + L + G V+G+ +DFP
Sbjct: 297 TGMVQDAQQNKLVVHPYTVRSDKLPEYTPDVNQLYDAL-YNKAG---VNGLFTDFPDKAV 352
Query: 390 AAVD 393
++
Sbjct: 353 KFLN 356
|
| >3l12_A Putative glycerophosphoryl diester phosphodiester; struct genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.60A {Silicibacter pomeroyi} Length = 313 | Back alignment and structure |
|---|
Score = 85.2 bits (211), Expect = 3e-18
Identities = 54/331 (16%), Positives = 110/331 (33%), Gaps = 52/331 (15%)
Query: 391 AVDCFAHLGKNASKSANLLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGV 450
++ F+ L + + VI GA G P T + ++ GV ++ V M+ DGV
Sbjct: 1 GMNGFSQLEGLRGHPSVVRVIGHRGARGVMPENTLEGFAFTLAAGVRALEFDVVMTADGV 60
Query: 451 PFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIFSFSLIWDEIQTL-IPQISNPYFK 509
P +L N+ + G+ + + EI+ L + +
Sbjct: 61 PVVTHNHHLANAMT---------RDGQGHWLTGAERQVAEMTYAEIRALDVGGLDGRTVY 111
Query: 510 FKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVL---ISIENAVYLAEKQGMSVTNSVM 566
+ F + +L + L++ + L + + A+ + +V+
Sbjct: 112 GRRFPDQAFLTGIHVPRLGELLDLCAGYGDQAPYLLLELKSDPALMHDHAARAEMVAAVL 171
Query: 567 EALGNAGYNKQTALKVMIQSTDSSVLMKLRE-----KTSY--ELVYKVKENIRDALNQTI 619
+ + ++ S D ++L + R TSY +L + D+
Sbjct: 172 ADVRRYRMEPR----TVMHSFDWALLGECRRQAPDLPTSYLSQLPENADDPGEDSAKPVG 227
Query: 620 EDIKKFADSVVLSKESVYP----LNSAFITSATDIVQRLQSFKLPVYVETFSNEFVSQAW 675
D + +S+ + S +T ++V L V W
Sbjct: 228 PDYDRMTESLPQAVASAGGQLWCPYFLDVT--PELVAEAHDLGLIVLT-----------W 274
Query: 676 DFFSDPTV----EINTYYEGAGIDGVITEFP 702
TV +I G+DG++T++P
Sbjct: 275 ------TVNEPEDIRRMAT-TGVDGIVTDYP 298
|
| >2oog_A Glycerophosphoryl diester phosphodiesterase; phosphatase, ST genomics, protein structure initiative, PSI; 2.20A {Staphylococcus aureus subsp} PDB: 2p76_A Length = 287 | Back alignment and structure |
|---|
Score = 75.0 bits (185), Expect = 6e-15
Identities = 57/315 (18%), Positives = 98/315 (31%), Gaps = 83/315 (26%)
Query: 415 GASGDYPSCTNLAYQKAISD-GVDFIDCPVQMSKDGVPFCL--SFINLINSTNAAQSKFN 471
GASG P T AY K+ ++ +I+ +Q +KDG + +N
Sbjct: 31 GASGYAPEHTFQAYDKSHNELKASYIEIDLQRTKDGHLVAMHDETVNR------------ 78
Query: 472 SITTTIPEIMAGSG-IFSFSLIWDEIQTL-------IPQISNPYFKFKLFRNPKNKNAGK 523
TT G G + ++ DE++ L +K + P
Sbjct: 79 --TTN------GHGKVEDYT--LDELKQLDAGSWFNKKYPKYARASYKNAKVP------- 121
Query: 524 FMKLSDFLEMAKNANSLSGVLISIE---NAVY--LAEKQGMSVTNSVMEALGNAGYNKQT 578
L + LE IE VY + E+ + ++ NK
Sbjct: 122 --TLDEILERYGP-----NANYYIETKSPDVYPGMEEQ-----LLASLKKHHLLNNNKLK 169
Query: 579 ALKVMIQSTDSSVLMKLREKT-SYELVYKVKENIRDALN-QTIEDIKKFADSVVLSKESV 636
VMIQS L K+ + LV V + N Q +++I+ +A + +
Sbjct: 170 NGHVMIQSFSDESLKKIHRQNKHVPLVKLVDKGELQQFNDQRLKEIRSYAIGLGPDYTDL 229
Query: 637 YPLNSAFITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDG 696
L+ V+ T + + ++ + G+DG
Sbjct: 230 TE----------QNTHHLKDLGFIVHPYTVNEK-------------ADMLRLNK-YGVDG 265
Query: 697 VITEFPMTAARYRSK 711
V T F +
Sbjct: 266 VFTNFADKYKEVIKE 280
|
| >2oog_A Glycerophosphoryl diester phosphodiesterase; phosphatase, ST genomics, protein structure initiative, PSI; 2.20A {Staphylococcus aureus subsp} PDB: 2p76_A Length = 287 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 7e-05
Identities = 59/330 (17%), Positives = 102/330 (30%), Gaps = 84/330 (25%)
Query: 75 AQGSNATSRWQTLTGDPPFVVA-RGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTK 133
A A LT + +A RG SG P+ + AY + S I D+Q TK
Sbjct: 7 ANKPQAIQWHTNLTNERFTTIAHRGA-SGYAPEHTFQAYDKSHNELKASYIE-IDLQRTK 64
Query: 134 DEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPGWFSIDYTLNDLSNIILNQG--- 190
D + D ++ +N DYTL++L L+ G
Sbjct: 65 DGHLVAMHDETVNRTTNGH-------------------GKVEDYTLDELKQ--LDAGSWF 103
Query: 191 --VYSRTDKFDGNGFQILTVQDMARQIKPPGLWLNIQ--HDAFY-----------AQHNL 235
Y + + ++ T+ ++ + P I+ Y +H+L
Sbjct: 104 NKKYPKYARASYKNAKVPTLDEILERYGP-NANYYIETKSPDVYPGMEEQLLASLKKHHL 162
Query: 236 SMRSFVLSVSRSVVVNYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGS 295
+ + V+ I S L+ I R + LV + K E++ +Q
Sbjct: 163 LNNN---KLKNGHVM--IQSFSDESLKKIH-RQNKHV-PLVK-LVDKGELQQFNDQ---- 210
Query: 296 LLKNLTFIKTFASGILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPIS 355
L I+++A G+ + V
Sbjct: 211 ---RLKEIRSYAIGLGPDYTDLTE-----------QNTHHLKDLGFIVHP---------- 246
Query: 356 FNYSYDPLTEYLSFIDNGDFSVDGVLSDFP 385
Y+ + + L G VDGV ++F
Sbjct: 247 --YTVNEKADMLRLNKYG---VDGVFTNFA 271
|
| >3i10_A Putative glycerophosphoryl diester phosphodiester; NP_812074.1; HET: MSE; 1.35A {Bacteroides thetaiotaomicron vpi-5482} Length = 278 | Back alignment and structure |
|---|
Score = 68.7 bits (168), Expect = 7e-13
Identities = 47/299 (15%), Positives = 95/299 (31%), Gaps = 58/299 (19%)
Query: 415 GASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCL--SFINLINSTNAAQSKFNS 472
G P + A AI+ VD ++ +Q +KDG + + ++
Sbjct: 25 GNWRSAPENSTAAIDSAIAMKVDIVEIDIQKTKDGQLILMHDNTLDR------------- 71
Query: 473 ITTTIPEIMAGSGIFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLE 532
TTT G G + +I+ L ++ + K + P L + L
Sbjct: 72 -TTT------GKGEIK-NWTLADIKKL--KLKDKDGKVTNYVVP---------TLEEALL 112
Query: 533 MAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEALGNAGYNKQTALKVMIQSTDSSVL 592
AK ++++++ A + + V L Q V+++
Sbjct: 113 TAKG-----KIMVNLDKAYDIFDD--------VYAILEKTETQNQ----VIMKGGQPIET 155
Query: 593 MKLREKTSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNSAFITSAT-DIV 651
+K RE SY I + + I + + + + + + + + +
Sbjct: 156 VK-REFGSYLDKVLYMPVIDLGNKEAEKIITDYLKEL---RPAAFEIIYSDPKNPLPPKI 211
Query: 652 QRLQSFKLPVYVETFSNEFVSQAWD--FFSDPTVEINTYYEGAGIDGVITEFPMTAARY 708
++L K ++ T D +DP E G + T+ P Y
Sbjct: 212 KQLLFKKSLIWYNTLWGSLAGNHDDNLALTDPEKSYGYLIEQLGARILQTDQPAYLLDY 270
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 71.0 bits (173), Expect = 1e-12
Identities = 58/366 (15%), Positives = 107/366 (29%), Gaps = 118/366 (32%)
Query: 19 LSLSLSKEEKSRTFIKRIGGAPAELNLSEMCNTRALGLLLVSALVVLHCGVIAQVSAQGS 78
S++L+ +E +K + P +L E+ T +IA+ G
Sbjct: 294 HSMTLTPDEVKSLLLKYLDCRPQDLP-REVLTTNPR-----------RLSIIAESIRDGL 341
Query: 79 NATSRWQTLTGD-------------PPFVVARGGFS--GIFPDSSSIAYSLTLITSAPSV 123
W+ + D P R F +FP S+ I L
Sbjct: 342 ATWDNWKHVNCDKLTTIIESSLNVLEPAEY-RKMFDRLSVFPPSAHIPTI-LL------S 393
Query: 124 ILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPGWFSIDYTLNDLS 183
++W DV + + KL S + + Q K ++ +
Sbjct: 394 LIWFDVIKSDVMVVVN----KLHKYSLVEK----QPKEST-------------ISIPSIY 432
Query: 184 --------------NIILNQGVYSRTDKFDGNGFQILTVQDMARQIKPP--GLWLN-IQH 226
I++ Y+ FD + I P + + I H
Sbjct: 433 LELKVKLENEYALHRSIVDH--YNIPKTFDSDDL-----------IPPYLDQYFYSHIGH 479
Query: 227 DAFYAQHNLSMRSFVLSVSRSVVVNYISSPEVNFLR------SIAARFRPSMTKLV--FR 278
+H M F R V +++ FL S A S+ + +
Sbjct: 480 HLKNIEHPERMTLF-----RMVFLDF------RFLEQKIRHDSTAWNASGSILNTLQQLK 528
Query: 279 FLGK--SEIEPTTNQTYGSLLKNLTFIKTFASGILVPK--DYIWPVDESLYLL-PHTTIV 333
F + +P + ++L F+ ++ K D + + L+ I
Sbjct: 529 FYKPYICDNDPKYERLVNAILD---FLPKIEENLICSKYTDLL-----RIALMAEDEAIF 580
Query: 334 LDAHKE 339
+AHK+
Sbjct: 581 EEAHKQ 586
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 59.9 bits (144), Expect = 2e-09
Identities = 65/466 (13%), Positives = 134/466 (28%), Gaps = 133/466 (28%)
Query: 357 NYSY-DPLTEYL-SFIDNGDFSVDGVLSDFP---LTPSAAVDCFAHLGKNASKSANLL-V 410
Y Y D L+ + +F+D +F V D P L+ +D S + L
Sbjct: 15 QYQYKDILSVFEDAFVD--NFDCKDVQ-DMPKSILS-KEEIDHIIMSKDAVSGTLRLFWT 70
Query: 411 ISKNGASG-----------DYP---SCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSF 456
+ +Y S ++ +I+ ++ D F
Sbjct: 71 LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN 130
Query: 457 INLINSTNAAQSKFNSITTTIPEI----------MAGSG----------------IFSFS 490
++ + + + + E+ + GSG F
Sbjct: 131 VSRL-------QPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFK 183
Query: 491 LIW-------------DEIQTLIPQISNPYFK--FKLFRNPKNKNAGKFMKLSDFLEMAK 535
+ W + +Q L+ QI + ++ + +L L+
Sbjct: 184 IFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ-AELRRLLKSKP 242
Query: 536 NANSLSGVLISIENAVYLAEKQGMSVTNS-VMEALGNAGYNKQTALKVMIQSTDSSVLMK 594
N L L+ L V N+ A + K+++ + V
Sbjct: 243 YENCL---LV-------LLN-----VQNAKAWNAFNLS-------CKILLTTRFKQVTDF 280
Query: 595 LREKTSYELVYKVKENIRDALN--QTIEDIKKFADSVV--LSKE--SVYPLNSAFI-TSA 647
L T+ + ++ L + + K+ D L +E + P + I S
Sbjct: 281 LSAATTTHISL---DHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESI 337
Query: 648 TDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGI--DGV-------- 697
D + ++K V + + + + +P E ++ +
Sbjct: 338 RDGLATWDNWKH-VNCDKL-TTIIESSLNVL-EPA-EYRKMFDRLSVFPPSAHIPTILLS 393
Query: 698 ------ITEFPMTAAR--YRSKLVRKQ---TSLCLYGAGIHFVLKV 732
I M ++ LV KQ +++ + I+ LKV
Sbjct: 394 LIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP--SIYLELKV 437
|
| >3ch0_A Glycerophosphodiester phosphodiesterase; YP_677622.1, glycerophosphoryl diester phosphodiesterase, ST genomics; HET: MSE CIT GOL; 1.50A {Cytophaga hutchinsonii atcc 33406} Length = 272 | Back alignment and structure |
|---|
Score = 66.2 bits (162), Expect = 5e-12
Identities = 48/306 (15%), Positives = 94/306 (30%), Gaps = 73/306 (23%)
Query: 415 GASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSIT 474
G G P T A+ KA+ GV ++ + +SKD +
Sbjct: 16 GCRGLLPENTIAAFTKALLLGVTTLEFDLVISKDNRVVVSHDTFFHHEITM-----MVDG 70
Query: 475 TTIPEIMAGSGIFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKF----MKLSDF 530
+ E + ++ + +I+ + + +P+ K+ K +
Sbjct: 71 EDVTEANEKNFNLY-AMNYADIKEI---------DVGMKTHPRFKSQKKVPAVKPLFREL 120
Query: 531 LEMAKNANSLSGVLISIE-----NAVYLAEKQGMSVTNSVMEALGNAGYNKQTALKVMIQ 585
+E A+ + + + + E + + V+ + A + +Q
Sbjct: 121 IETAEKLS--AKIQYNGEIKSTVEGDNIDHPNIALFCDLVVAEIKKAHITDR----FTLQ 174
Query: 586 STDSSVLMKLRE-----KTSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLN 640
S D L + K SY LV + L + +E + VY +
Sbjct: 175 SFDVRALEYMHSQYPDIKLSY-LVET-----KGTLKKQLEKLSFTPA--------VYSPD 220
Query: 641 SAFITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTV----EINTYYEGAGIDG 696
++ + + V W TV EI T G+DG
Sbjct: 221 VTLVSKK--DIDAAHKLGMRVIP-----------W------TVNTKEEIETLIS-LGVDG 260
Query: 697 VITEFP 702
+IT++P
Sbjct: 261 IITDYP 266
|
| >2o55_A Putative glycerophosphodiester phosphodiesterase; beta barrel, structural genomics, protein structure initiati 2; 2.81A {Galdieria sulphuraria} Length = 258 | Back alignment and structure |
|---|
Score = 65.0 bits (159), Expect = 8e-12
Identities = 32/309 (10%), Positives = 78/309 (25%), Gaps = 79/309 (25%)
Query: 415 GASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCL---SFINLINSTNAAQSKFN 471
G G P T ++ + + +I+ +++ K G + +
Sbjct: 16 GKEGLAPENTLRSFVLCMERNIPYIETDLRVCKTGEIVLFHGTPEGTIPFYKD------- 68
Query: 472 SITTTIPEIMAGSGIFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAG---KFMKLS 528
G+ L +E++ L + G L
Sbjct: 69 -----------GTSRIG-DLSLEELKRL--------------------DVGGGHTIPSLE 96
Query: 529 DFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEALGNAGYNKQTALKVMIQSTD 588
+ + + + ++ + ++ G ++ + ++ V S
Sbjct: 97 ELFVAIEEQKFNLKLNLELKGEEWKRKESGD--HQRLLLLVEKYHMQER----VDYCSFH 150
Query: 589 SSVLMKLRE-----KTSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNSAF 643
L L+ K +Y L + + + A+ V + +
Sbjct: 151 HEALAHLKALCPDVKITY-LFNYMGQPTPLDFVEQACYGD--ANGVSMLFHYLTK----- 202
Query: 644 ITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPM 703
+ V L V V D + E +D + + +P
Sbjct: 203 -----EQVCTAHEKGLSVTVWM-----PWIFDD---SEE-DWKKCLE-LQVDLICSNYPF 247
Query: 704 TAARYRSKL 712
+ S +
Sbjct: 248 GLMNFLSNI 256
|
| >3mz2_A Glycerophosphoryl diester phosphodiesterase; structural genomics, joint center for structural genomics; HET: MSE PE4; 1.55A {Parabacteroides distasonis} Length = 292 | Back alignment and structure |
|---|
Score = 64.0 bits (156), Expect = 3e-11
Identities = 46/345 (13%), Positives = 104/345 (30%), Gaps = 78/345 (22%)
Query: 376 SVDGVLSDFPLTPSAAVDCFAHLGKNASKSANLLVISKNGASGDYPSCTNLAYQKAISDG 435
+VD ++S + H G G YP + ++ +S
Sbjct: 16 NVDDLISFYQYADDRIPLISGHRG---------------GRGKGYPENSMETFENTLSYT 60
Query: 436 VDFIDCPVQMSKDGVPFCL--SFINLINSTNAAQSKFNSITTTIPEIMAGSGIFSFSLIW 493
+ +++KD V + T+ G+G S W
Sbjct: 61 PATFEIDPRLTKDSVIVLFHDDTLER--------------TSN------GTGKVS-DYTW 99
Query: 494 DEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYL 553
+E+Q ++ +P +R P L + + A+ ++ ++
Sbjct: 100 EELQNF--RLKDPEGNITNYRIP---------TLEEAIRWARGK-----TILILDKKDVP 143
Query: 554 AEKQGMSVTNSVMEALGNAGYNKQTALKVMIQSTDSSVLMKLREKTSYELVYKVKENIRD 613
E+ + + + VMI D + E K + +
Sbjct: 144 MER--------TAQLITDMQAEPY----VMITVHDGASARFFYE--------KNPNFMFE 183
Query: 614 ALNQTIEDIKKFADSVVLSKESVYPLNSAFITSATDIVQRLQSFKLPVYVETFSNEFVSQ 673
A +T E ++ + D+ + + + +++ L + + T ++ +
Sbjct: 184 AFVKTKEAVQDYEDNGIPWSHIMAYVGPKITPEVREVIDMLHERGVMCMISTAPSD--DK 241
Query: 674 AWDFFSDPTVEINTYYEGAGIDGVITEFPMTAARYRSKLVRKQTS 718
S E G+D + ++ P+ A S L+ +S
Sbjct: 242 LSTPESRA--EAYRMIIRQGVDIIESDRPIEVAEAISSLIPVSSS 284
|
| >2pz0_A Glycerophosphoryl diester phosphodiesterase; glycerophosphodiester phosphodiesterase, T. tengcongensis; 1.91A {Thermoanaerobacter tengcongensis} Length = 252 | Back alignment and structure |
|---|
Score = 60.0 bits (146), Expect = 4e-10
Identities = 50/311 (16%), Positives = 106/311 (34%), Gaps = 91/311 (29%)
Query: 415 GASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCL--SFINLINSTNAAQSKFNS 472
G S + P T A+++A+ G D I+ VQ++KDG + ++
Sbjct: 19 GDSKNVPENTIAAFKRAMELGADGIELDVQLTKDGHLVVIHDETVD-------------- 64
Query: 473 ITTTIPEIMAGSGIFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLE 532
TT G G +EI+ L + K + L + E
Sbjct: 65 RTTN------GEGFVK-DFTLEEIKKL---------DAGIKFGEKFAGE-RIPTLYEVFE 107
Query: 533 MAKNANSLSGVLISIE------NAVYLAEKQGMSVTNSVMEALGNAGYNKQTALKVMIQS 586
+ + L++IE + EK +++A+ + ++ V+I S
Sbjct: 108 LIGD----KDFLVNIEIKSGIVLYPGIEEK--------LIKAIKEYNFEER----VIISS 151
Query: 587 TDSSVLMKLREKT-SYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNSAFIT 645
+ L +++ ++ + + + + + A S+ ++ P
Sbjct: 152 FNHYSLRDVKKMAPHLKIGLLYQCGLVEPWHMALR---MEAYSLHPFYFNIIP------- 201
Query: 646 SATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTV----EINTYYEGAGIDGVITEF 701
++V+ + + ++ W TV ++ + AG+DG+IT+
Sbjct: 202 ---ELVEGCKKNGVKLFP-----------W------TVDRKEDMERMIK-AGVDGIITDD 240
Query: 702 PMTAARYRSKL 712
P T K
Sbjct: 241 PETLINLVRKG 251
|
| >3qvq_A Phosphodiesterase OLEI02445; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta hydrolase, hydrolase; HET: MSE G3P; 1.60A {Oleispira antarctica} Length = 252 | Back alignment and structure |
|---|
Score = 57.6 bits (140), Expect = 2e-09
Identities = 38/310 (12%), Positives = 88/310 (28%), Gaps = 90/310 (29%)
Query: 415 GASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCL--SFINLINSTNAAQSKFNS 472
G+SG P T + A G+ +++ V +S DG+P +++
Sbjct: 17 GSSGQAPENTLASLHLAGQQGIKWVEIDVMLSGDGIPVIFHDDYLS-------------- 62
Query: 473 ITTTIPEIMAGSGIFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLE 532
TT G G+ E++ L ++ + + L + +E
Sbjct: 63 RTTD------GDGLIY-KTPLAELKQL---------DAGSWKGQEYQQE-TIPTLLEAIE 105
Query: 533 MAKNANSLSGVLISIE--NAVYLAEKQGMSVTNSVMEALGNAGYNKQTALKVMIQSTDSS 590
+ G+ +++E L E+ + + + + L ++ S +
Sbjct: 106 VISQ----YGMGLNLELKPCEGLEEETIAASVEVLKQ-------HWPQDLPLLFSSFNYF 154
Query: 591 VLMKLRE-----KTSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNSAFIT 645
L+ + Y V + ++ L + + +
Sbjct: 155 ALVSAKALWPEIARGY-NVSAIPSAWQERLEHL------DCAGLHIHQSFFDV------- 200
Query: 646 SATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTV----EINTYYEGAGIDGVITEF 701
V +++ V + T+ Y G+D V +++
Sbjct: 201 ---QQVSDIKAAGYKVLA-----------F------TINDESLALKLYN-QGLDAVFSDY 239
Query: 702 PMTAARYRSK 711
P
Sbjct: 240 PQKIQSAIDS 249
|
| >1o1z_A GDPD, glycerophosphodiester phosphodiesterase; TM1621, glycerophosphodiester phosphodiesterase (GDPD), STRU genomics, JCSG, PSI; 1.60A {Thermotoga maritima} SCOP: c.1.18.3 Length = 234 | Back alignment and structure |
|---|
Score = 56.9 bits (138), Expect = 3e-09
Identities = 48/293 (16%), Positives = 92/293 (31%), Gaps = 90/293 (30%)
Query: 415 GASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSIT 474
G S Y T A+ KAI G + ++ V++SKDG +L
Sbjct: 20 GYSAKYLENTLEAFMKAIEAGANGVELDVRLSKDGKVVVSHDEDLKRLFG---------- 69
Query: 475 TTIPEIMAGSGIFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMA 534
E++ L GK L + E
Sbjct: 70 --------LDVKIR-DATVSELKEL--------------------TDGKITTLKEVFENV 100
Query: 535 KNANSLSGVLISIENAVYLAEKQGMSVTNSVMEALGNAGYNKQTALKVMIQSTDSSVLMK 594
+ +I+IE + E++ ++V+E ++ S D +L +
Sbjct: 101 SD-----DKIINIE----IKERE---AADAVLEISKKRK-------NLIFSSFDLDLLDE 141
Query: 595 LRE--KTSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNSAFITSATDIVQ 652
+ K Y L+ + + + +E + ++ V P + + A ++++
Sbjct: 142 KFKGTKYGY-LIDEENYGSIENFVERVEKERPYSLHV--------PYQAFELEYAVEVLR 192
Query: 653 RLQSFKLPVYVETFSNEFVSQAWDFFSDPTV---EINTYYEGAGIDGVITEFP 702
+ + ++V W T+ EI IDGVIT+
Sbjct: 193 SFRKKGIVIFV-----------W------TLNDPEIYRKIR-REIDGVITDEV 227
|
| >2otd_A Glycerophosphodiester phosphodiesterase; structural genomics PSI-2, protein structure initiative, midwest center for STR genomics, hydrolase; 2.60A {Shigella flexneri} Length = 247 | Back alignment and structure |
|---|
Score = 54.5 bits (132), Expect = 2e-08
Identities = 40/306 (13%), Positives = 82/306 (26%), Gaps = 100/306 (32%)
Query: 415 GASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSI- 473
G P T A G I+ ++SKDG F +
Sbjct: 14 GGGKLAPENTLAAIDVGAKYGHKMIEFDAKLSKDGEIFL-------------------LH 54
Query: 474 ------TTTIPEIMAGSGIFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKL 527
T+ G G+ L W ++ + + + K L
Sbjct: 55 DDNLERTSN------GWGVAG-ELNWQDLLRV---------DAGSWYSKAFKGE-PLPLL 97
Query: 528 SDFLEMAKNANSLSGVLISIE--NAVYLAEKQGMSVTNSVMEALGNAGYNKQTALKVMIQ 585
S E + G++ +IE +T ++ + T ++
Sbjct: 98 SQVAERCRE----HGMMANIEIKPTTGTGP-----LTGKMVALAARQLWAGMT--PPLLS 146
Query: 586 STDSSVLMKLRE-----KTSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLN 640
S + L ++ L+ + +++ R+ + S+ L+ + +
Sbjct: 147 SFEIDALEAAQQAAPELPRGL-LLDEWRDDWRELTARL------GCVSIHLNHKLLDK-- 197
Query: 641 SAFITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTV----EINTYYEGAGIDG 696
V +L+ L + V + TV G+D
Sbjct: 198 --------ARVMQLKDAGLRILV-----------Y------TVNKPQHAAELLR-WGVDC 231
Query: 697 VITEFP 702
+ T+
Sbjct: 232 ICTDAI 237
|
| >3ks6_A Glycerophosphoryl diester phosphodiesterase; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.80A {Agrobacterium tumefaciens str} PDB: 3ks5_A* Length = 250 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 3e-08
Identities = 28/314 (8%), Positives = 78/314 (24%), Gaps = 97/314 (30%)
Query: 415 GASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSI- 473
G + ++ T + + ++ ++ + + DG
Sbjct: 10 GGTLEFGDSTPHGFTATAAMALEEVEFDLHPTADGAIVV-------------------HH 50
Query: 474 ------TTTIPEIMAGSGIFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKF--- 524
TT +G + +++T
Sbjct: 51 DPTLDATTD------MTGAIV-DMTLAKVKTA--------------------TIRYGAGS 83
Query: 525 --MKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEALGNAGYNKQTALKV 582
M L + + +++ I+ V +G V+ L ++
Sbjct: 84 HPMTLEELCALYVDSH--VNFRCEIKPGVDGLPYEGF--VALVIAGLERHSMLER----T 135
Query: 583 MIQSTDSSVLMKLREKTS-YELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNS 641
S + + +L + T+ L ++ + + + ++
Sbjct: 136 TFSSFLLASMDELWKATTRPRLWLVSPSVLQQLGPGAVIETAIAHSIHEIG------VHI 189
Query: 642 AFITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTV----EINTYYEGAGIDGV 697
+ ++ ++Q+ L W +I + G+
Sbjct: 190 DTADAG--LMAQVQAAGLDFGC-----------W------AAHTPSQITKALD-LGVKVF 229
Query: 698 ITEFPMTAARYRSK 711
T+ P A R++
Sbjct: 230 TTDRPTLAIALRTE 243
|
| >3no3_A Glycerophosphodiester phosphodiesterase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.89A {Parabacteroides distasonis} Length = 238 | Back alignment and structure |
|---|
Score = 52.6 bits (127), Expect = 9e-08
Identities = 33/301 (10%), Positives = 73/301 (24%), Gaps = 103/301 (34%)
Query: 416 ASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCL--SFINLINSTNAAQSKFNSI 473
+ + + ++A G + V ++ D V + I
Sbjct: 15 KTEGSAQNSIRSLERASEIGAYGSEFDVHLTADNVLVVYHDNDIQ--------------- 59
Query: 474 TTTIPEIMAGSGIFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAG---KFMKLSDF 530
I +DE++ L K L +
Sbjct: 60 GKHIQS-----------CTYDELKDL--------------------QLSNGEKLPTLEQY 88
Query: 531 LEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEALGNAGYNKQTALKVMIQSTDSS 590
L+ AK L + + E + ++ ++ + K+ S +
Sbjct: 89 LKRAKK---LKNIRLIFELKSHDTPERNRDAARLSVQMVKRMKLAKR----TDYISFNMD 141
Query: 591 VLMKLRE-----KTSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNSAFIT 645
+ + SY L + ++++ +P
Sbjct: 142 ACKEFIRLCPKSEVSY-LN-------GELSPMELKELGFTGLDYHYKVLQSHP------- 186
Query: 646 SATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTV----EINTYYEGAGIDGVITEF 701
D V+ + + V W TV + + G+D + T+
Sbjct: 187 ---DWVKDCKVLGMTSNV-----------W------TVDDPKLMEEMID-MGVDFITTDL 225
Query: 702 P 702
P
Sbjct: 226 P 226
|
| >1zcc_A Glycerophosphodiester phosphodiesterase; NYSGXRC, agrobacterium tumefaciens STR. C58, structural genomics; 2.50A {Agrobacterium tumefaciens str} SCOP: c.1.18.3 Length = 248 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 2e-07
Identities = 45/314 (14%), Positives = 82/314 (26%), Gaps = 103/314 (32%)
Query: 415 GASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSI- 473
GA+ P T A A+ G D+I+ V+ S DGV + I
Sbjct: 9 GANRFAPENTFAAADLALQQGADYIELDVRESADGVLYV-------------------IH 49
Query: 474 ------TTTIPEIMAGSGIFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKL 527
TT G+G ++ EI TL + + + K A +L
Sbjct: 50 DETLDRTTN------GTGPVG-HMLSSEIDTL---------DAGGWFDDRFKGA-IVPRL 92
Query: 528 SDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEALGNAGYNKQTALKVMIQST 587
+LE + + IE K V + + G + S
Sbjct: 93 DAYLEHLRG-----RAGVYIELKYCDPAK--------VAALVRHLGMVRD----TFYFSF 135
Query: 588 DSSVLMKLRE-----KTSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNSA 642
+ L+ + + K A + +
Sbjct: 136 SEEMRQGLQSIAPEFRRMM-TLDIAKSPSLVGA-------VHHASIIE-------ITPAQ 180
Query: 643 FITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTV----EINTYYEGAGIDGVI 698
I++ + L + V + ++ + +D +
Sbjct: 181 MRRPG--IIEASRKAGLEIMV-----------Y------YGGDDMAVHREIATSDVDYIN 221
Query: 699 TEFPMTAARYRSKL 712
+ P A RS +
Sbjct: 222 LDRPDLFAAVRSGM 235
|
| >1vd6_A Glycerophosphoryl diester phosphodiesterase; glycerophosphod phosphodiesterase, HB8; 1.30A {Thermus thermophilus} SCOP: c.1.18.3 PDB: 1v8e_A Length = 224 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 3e-06
Identities = 10/40 (25%), Positives = 19/40 (47%)
Query: 415 GASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCL 454
GA T +++ A+ G+D ++ V ++DGV
Sbjct: 15 GAPLKAKENTLESFRLALEAGLDGVELDVWPTRDGVFAVR 54
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 733 | |||
| 1ydy_A | 356 | Glycerophosphoryl diester phosphodiesterase; struc | 100.0 | |
| 2pz0_A | 252 | Glycerophosphoryl diester phosphodiesterase; glyce | 100.0 | |
| 3qvq_A | 252 | Phosphodiesterase OLEI02445; structural genomics, | 100.0 | |
| 3qvq_A | 252 | Phosphodiesterase OLEI02445; structural genomics, | 100.0 | |
| 2pz0_A | 252 | Glycerophosphoryl diester phosphodiesterase; glyce | 100.0 | |
| 2oog_A | 287 | Glycerophosphoryl diester phosphodiesterase; phosp | 100.0 | |
| 2otd_A | 247 | Glycerophosphodiester phosphodiesterase; structura | 100.0 | |
| 2oog_A | 287 | Glycerophosphoryl diester phosphodiesterase; phosp | 100.0 | |
| 3ks6_A | 250 | Glycerophosphoryl diester phosphodiesterase; struc | 100.0 | |
| 2otd_A | 247 | Glycerophosphodiester phosphodiesterase; structura | 100.0 | |
| 1ydy_A | 356 | Glycerophosphoryl diester phosphodiesterase; struc | 100.0 | |
| 3l12_A | 313 | Putative glycerophosphoryl diester phosphodiester; | 100.0 | |
| 2o55_A | 258 | Putative glycerophosphodiester phosphodiesterase; | 100.0 | |
| 3l12_A | 313 | Putative glycerophosphoryl diester phosphodiester; | 100.0 | |
| 3ks6_A | 250 | Glycerophosphoryl diester phosphodiesterase; struc | 100.0 | |
| 3no3_A | 238 | Glycerophosphodiester phosphodiesterase; structura | 100.0 | |
| 3ch0_A | 272 | Glycerophosphodiester phosphodiesterase; YP_677622 | 100.0 | |
| 3ch0_A | 272 | Glycerophosphodiester phosphodiesterase; YP_677622 | 100.0 | |
| 3mz2_A | 292 | Glycerophosphoryl diester phosphodiesterase; struc | 100.0 | |
| 1zcc_A | 248 | Glycerophosphodiester phosphodiesterase; NYSGXRC, | 100.0 | |
| 2o55_A | 258 | Putative glycerophosphodiester phosphodiesterase; | 100.0 | |
| 3mz2_A | 292 | Glycerophosphoryl diester phosphodiesterase; struc | 100.0 | |
| 1zcc_A | 248 | Glycerophosphodiester phosphodiesterase; NYSGXRC, | 100.0 | |
| 3no3_A | 238 | Glycerophosphodiester phosphodiesterase; structura | 100.0 | |
| 1o1z_A | 234 | GDPD, glycerophosphodiester phosphodiesterase; TM1 | 100.0 | |
| 3i10_A | 278 | Putative glycerophosphoryl diester phosphodiester; | 100.0 | |
| 1vd6_A | 224 | Glycerophosphoryl diester phosphodiesterase; glyce | 100.0 | |
| 1vd6_A | 224 | Glycerophosphoryl diester phosphodiesterase; glyce | 100.0 | |
| 1o1z_A | 234 | GDPD, glycerophosphodiester phosphodiesterase; TM1 | 100.0 | |
| 3i10_A | 278 | Putative glycerophosphoryl diester phosphodiester; | 100.0 | |
| 1xx1_A | 285 | Smase I, sphingomyelinase I; structure, quick cryo | 100.0 | |
| 1xx1_A | 285 | Smase I, sphingomyelinase I; structure, quick cryo | 100.0 | |
| 3rlg_A | 302 | Sphingomyelin phosphodiesterase D lisictox-alphai; | 99.87 | |
| 3rlg_A | 302 | Sphingomyelin phosphodiesterase D lisictox-alphai; | 99.86 | |
| 1djx_A | 624 | PLC-D1, phosphoinositide-specific phospholipase C, | 91.61 | |
| 2zkm_X | 799 | 1-phosphatidylinositol-4,5-bisphosphate phosphodie | 90.63 | |
| 3qr0_A | 816 | Phospholipase C-beta (PLC-beta); PH domain, EF han | 89.58 | |
| 1djx_A | 624 | PLC-D1, phosphoinositide-specific phospholipase C, | 89.57 | |
| 3kts_A | 192 | Glycerol uptake operon antiterminator regulatory; | 88.74 | |
| 2zkm_X | 799 | 1-phosphatidylinositol-4,5-bisphosphate phosphodie | 88.21 | |
| 3qr0_A | 816 | Phospholipase C-beta (PLC-beta); PH domain, EF han | 87.33 | |
| 3ohm_B | 885 | 1-phosphatidylinositol-4,5-bisphosphate phosphodi | 85.57 | |
| 1vkf_A | 188 | Glycerol uptake operon antiterminator-related Pro; | 83.86 | |
| 3h4x_A | 339 | Phosphatidylinositol-specific phospholipase C1; PI | 83.01 | |
| 3ohm_B | 885 | 1-phosphatidylinositol-4,5-bisphosphate phosphodi | 81.29 |
| >1ydy_A Glycerophosphoryl diester phosphodiesterase; structural genomics, PSI, protein structu initiative; 1.70A {Escherichia coli} SCOP: c.1.18.3 PDB: 1t8q_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-48 Score=423.86 Aligned_cols=286 Identities=20% Similarity=0.296 Sum_probs=216.6
Q ss_pred CCCCEEEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCCccccCccccccccccccccCCCC
Q 004721 89 GDPPFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVP 168 (733)
Q Consensus 89 ~~~~~viaHRG~~~~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l~rtt~~~~~~~~~~~~~~~~g~~ 168 (733)
+.+|+||||||+++.+||||++||+.|++.|+| +||+|||+||||++||+||.+|+||||+.+.|+++++. +|.
T Consensus 28 ~~~~~iiaHRG~~~~~PENTl~Af~~A~~~Gad--~iE~DV~lTkDg~lVv~HD~~l~rtt~~~~~f~~~~~~---~g~- 101 (356)
T 1ydy_A 28 SNEKIVIAHRGASGYLPEHTLPAKAMAYAQGAD--YLEQDLVMTKDDNLVVLHDHYLDRVTDVADRFPDRARK---DGR- 101 (356)
T ss_dssp -CCCEEEETTTTTTTSSTTCHHHHHHHHHTTCS--EEEEEEEECTTSCEEECSSSBCTTTBSHHHHSTTCCCT---TSC-
T ss_pred CCCceEEEeCCCCCCCCcchHHHHHHHHHcCCC--EEEeeeEECCCCcEEEeCCChHHhhcCccccccccccc---CCC-
Confidence 457899999999999999999999999999999 99999999999999999999999999998888776653 332
Q ss_pred CCccccccCCHHhhccccccccccC--------CCCCCCC--CCcccccHHHHHHhhC--------CCceEeeccCchhh
Q 004721 169 TPGWFSIDYTLNDLSNIILNQGVYS--------RTDKFDG--NGFQILTVQDMARQIK--------PPGLWLNIQHDAFY 230 (733)
Q Consensus 169 ~~g~~v~d~T~~eL~~l~~~~~~~~--------~~~~~~g--~~~~iptL~e~l~~~~--------~~~l~iEiK~~~~~ 230 (733)
|+|.|+||+||++|+++.||.. ++..|.. .+++||||+|+|++++ +++++||||.+...
T Consensus 102 ---~~v~d~T~~eL~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~iptL~evl~~~~~~~~~~~~~~~l~iEiK~~~~~ 178 (356)
T 1ydy_A 102 ---YYAIDFTLDEIKSLKFTEGFDIENGKKVQTYPGRFPMGKSDFRVHTFEEEIEFVQGLNHSTGKNIGIYPEIKAPWFH 178 (356)
T ss_dssp ---CBGGGSCHHHHHHSCBCSCEEEETTEEEESSTTSSCTTCSCCCCCBHHHHHHHHHHHHHHHSCCCEEEEEECCHHHH
T ss_pred ---cchhhCcHHHHHhCCCCccccccccccccccccccccccCCCcCCCHHHHHHHHHHhhhcccCCceEEEeecCcccc
Confidence 4899999999999999987642 2233321 1589999999999985 47899999987654
Q ss_pred hhcCCcHHHHHHHHHhhcCC------ceeccCCHHHHHHHHHh-----cCCCcccchhhhcCCCccC---------CCCC
Q 004721 231 AQHNLSMRSFVLSVSRSVVV------NYISSPEVNFLRSIAAR-----FRPSMTKLVFRFLGKSEIE---------PTTN 290 (733)
Q Consensus 231 ~~~~~~~~~~v~~~l~~~~~------~~i~SF~~~~l~~l~~~-----~p~~~~~~~~~l~~~~~~~---------~~~~ 290 (733)
...+..+++.++++++++++ ++|+||+++.|++++++ .| .+++++++ ...... +..+
T Consensus 179 ~~~~~~~~~~v~~~l~~~~~~~~~~~v~i~SF~~~~l~~~~~~~~p~~~p--~~~~~~L~-~~~~~~~~~~~~~~~~~~~ 255 (356)
T 1ydy_A 179 HQEGKDIAAKTLEVLKKYGYTGKDDKVYLQCFDADELKRIKNELEPKMGM--ELNLVQLI-AYTDWNETQQKQPDGSWVN 255 (356)
T ss_dssp HHTTCCHHHHHHHHHHHTTCCSTTSSBEEEESCHHHHHHHHHTHHHHHTC--CCEEEEEE-CCGGGCCCEEECTTSCEEE
T ss_pred cccchhHHHHHHHHHHHcCCCCCCCCEEEEcCCHHHHHHHHhhcccccCC--CceEEEEe-ccCcccccccccccccccc
Confidence 43445689999999999875 59999999999999998 56 67777633 211100 0001
Q ss_pred cchhHHH--hhHHHHHhhcccccCCccccccCCCccCCCCChHHHHHHHHcCCeEEEeecCCCCCcccCCCCChHHHH-H
Q 004721 291 QTYGSLL--KNLTFIKTFASGILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEY-L 367 (733)
Q Consensus 291 ~~~~~~~--~~l~~~~~~a~~i~~~~~~i~~~~~~~~~~~~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~~~-~ 367 (733)
..|..+. ..+..+..++.+++|++..+...........++++|+.+|++|++|++||||++... ...++.+++ +
T Consensus 256 ~~~~~~~~~~~l~~~~~~a~~i~p~~~~~~~~~~~~~~~~~~~~v~~ah~~Gl~V~~WTvn~~~l~---~~~~d~~~~~~ 332 (356)
T 1ydy_A 256 YNYDWMFKPGAMKQVAEYADGIGPDYHMLIEETSQPGNIKLTGMVQDAQQNKLVVHPYTVRSDKLP---EYTPDVNQLYD 332 (356)
T ss_dssp CCCGGGGSTTHHHHHTTTCSEEEEBGGGTBCTTCBTTBCCBCSHHHHHHHTTCEECCBCBCTTSCC---TTCSSHHHHHH
T ss_pred cchhhhcchhhHHHHHhhCeEEccCHHHhccccccccccCCHHHHHHHHHCCCEEEEEEECccccc---ccccCHHHHHH
Confidence 1233332 246666778888998877665321111122346799999999999999999986221 112345666 6
Q ss_pred H-HHhcCCcccceEEecCCCCccccc
Q 004721 368 S-FIDNGDFSVDGVLSDFPLTPSAAV 392 (733)
Q Consensus 368 ~-l~~~G~~~VDgIiTD~P~~~~~~l 392 (733)
+ ++++| |||||||+|+++++++
T Consensus 333 ~~l~~~G---VDgIiTD~P~~~~~~l 355 (356)
T 1ydy_A 333 ALYNKAG---VNGLFTDFPDKAVKFL 355 (356)
T ss_dssp HHHTTSC---CSEEEESCHHHHHHHH
T ss_pred HHHHHcC---CCEEEeCCHHHHHHhh
Confidence 5 56899 9999999999887654
|
| >2pz0_A Glycerophosphoryl diester phosphodiesterase; glycerophosphodiester phosphodiesterase, T. tengcongensis; 1.91A {Thermoanaerobacter tengcongensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-48 Score=399.36 Aligned_cols=241 Identities=22% Similarity=0.293 Sum_probs=200.8
Q ss_pred CcceEEecCCCCCCCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeeccccccccccCCCcCCCcccccccccccCc
Q 004721 406 ANLLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSG 485 (733)
Q Consensus 406 ~~~~iIaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L~rtt~v~~~~~~~r~~~~~~~~~~~g 485 (733)
-+|.||||||+++.+||||++||++|++.|||+||+|||+||||++||+||.+|+|+|| ++|
T Consensus 10 ~~p~iiaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDG~lVv~HD~~l~Rtt~------------------~~g 71 (252)
T 2pz0_A 10 MKTLVIAHRGDSKNVPENTIAAFKRAMELGADGIELDVQLTKDGHLVVIHDETVDRTTN------------------GEG 71 (252)
T ss_dssp -CCEEEEETTTTTTSCTTSHHHHHHHHHHTCSEEEEEEEECTTCCEEECSSSBSTTTSS------------------CCS
T ss_pred CCceEEEcCCCCCCCCcchHHHHHHHHHcCCCEEEEEEEEecCCeEEEEcCCcccccCC------------------CCc
Confidence 36899999999999999999999999999999999999999999999999999999999 777
Q ss_pred ccccccCHHHHhccCccccCCCccccccCCcCCCCCccccCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCCcHHHHH
Q 004721 486 IFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSV 565 (733)
Q Consensus 486 ~~i~d~T~~EL~~L~~~~~~~~~~~~~~~~~~~~g~~~IptLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~v 565 (733)
.|.++||+||++|+++.|. ++.|.+ ++||||+|+|+++++. + +.++||||.+... ...+++++
T Consensus 72 -~v~~~t~~eL~~l~~~~~~---------~~~~~~-~~iPtL~evL~~~~~~-~-~~l~iEiK~~~~~----~~~~~~~v 134 (252)
T 2pz0_A 72 -FVKDFTLEEIKKLDAGIKF---------GEKFAG-ERIPTLYEVFELIGDK-D-FLVNIEIKSGIVL----YPGIEEKL 134 (252)
T ss_dssp -BGGGSCHHHHTTSCSSTTT---------CGGGTT-CCCCBHHHHHHHHTTS-C-CEEEEEECCSSCC----CTTHHHHH
T ss_pred -chhhCcHHHHhhcCCCCCC---------CCCCCC-CcCCCHHHHHHHhhhc-C-CeEEEEeCCCCcc----cHHHHHHH
Confidence 8999999999999997552 235564 8999999999999763 3 3899999976421 13588999
Q ss_pred HHHHHHcCCCCCCCceEEEEeCCHHHHHHHHhc-cCceEEEEeecccchhhhHHHHHHHHHHhHhcCCCcccccCCcccc
Q 004721 566 MEALGNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNSAFI 644 (733)
Q Consensus 566 ~~~l~~~~~~~~~~~~vii~Sfd~~~L~~lk~~-p~~~~~~l~~~~~~~~~~~~l~~i~~~a~~i~~~~~~i~~~~~~~l 644 (733)
+++++++++. ++|+++||++..|+.+++. |++++++++.....+. .. ++..+++ ..+.+. +.
T Consensus 135 ~~~l~~~~~~----~~vii~SF~~~~l~~~~~~~p~~~~~~l~~~~~~~~----~~----~~~~~~~--~~i~~~---~~ 197 (252)
T 2pz0_A 135 IKAIKEYNFE----ERVIISSFNHYSLRDVKKMAPHLKIGLLYQCGLVEP----WH----MALRMEA--YSLHPF---YF 197 (252)
T ss_dssp HHHHHHTTCT----TTEEEEESBHHHHHHHHHHCTTSEEEEEECSBCSST----HH----HHHHTTC--SEEEEB---GG
T ss_pred HHHHHhcCCC----CCEEEEeCCHHHHHHHHHHCCCCCEEEEecCccccH----HH----HHHHcCC--eEEecc---hh
Confidence 9999999988 7999999999999999999 9999999987543221 11 2222332 233332 22
Q ss_pred ccchHHHHHHHHCCCcEEEEecCCcccccccccCCChHHHHHHHHhhcCcCEEEeCChHHHHHHHHhh
Q 004721 645 TSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPMTAARYRSKL 712 (733)
Q Consensus 645 ~~~~~~v~~~~~~Gl~v~~wTvn~~~~~~~~~~~~d~~~e~~~~l~~~GVdgIiTD~P~~~~~~l~~~ 712 (733)
..++++++.+|++|++|++||+|++. ++.+++ ++||||||||+|+.+.++++++
T Consensus 198 ~~~~~~v~~~~~~G~~v~~wTvn~~~-------------~~~~l~-~~GvdgIiTD~P~~~~~~l~~~ 251 (252)
T 2pz0_A 198 NIIPELVEGCKKNGVKLFPWTVDRKE-------------DMERMI-KAGVDGIITDDPETLINLVRKG 251 (252)
T ss_dssp GCCHHHHHHHHHTTCEECCBCCCSHH-------------HHHHHH-HHTCSEEEESCHHHHHHHHC--
T ss_pred cCCHHHHHHHHHCCCEEEEECCCCHH-------------HHHHHH-HcCCCEEEcCCHHHHHHHHhhc
Confidence 34689999999999999999999987 888886 9999999999999999998765
|
| >3qvq_A Phosphodiesterase OLEI02445; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta hydrolase, hydrolase; HET: MSE G3P; 1.60A {Oleispira antarctica} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-47 Score=393.00 Aligned_cols=245 Identities=17% Similarity=0.178 Sum_probs=201.7
Q ss_pred CcCCcceEEecCCCCCCCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeeccccccccccCCCcCCCcccccccccc
Q 004721 403 SKSANLLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMA 482 (733)
Q Consensus 403 ~~~~~~~iIaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L~rtt~v~~~~~~~r~~~~~~~~~ 482 (733)
..++.|.||||||+++.+||||++||++|++.|+|+||+|||+||||++||+||.+|+|+||
T Consensus 5 ~~~~~p~iiaHRG~~~~~pENTl~af~~A~~~G~d~iE~DV~lT~Dg~~Vv~HD~~l~r~t~------------------ 66 (252)
T 3qvq_A 5 AYSFLPQVIAHRGSSGQAPENTLASLHLAGQQGIKWVEIDVMLSGDGIPVIFHDDYLSRTTD------------------ 66 (252)
T ss_dssp GGGGCCSEEEETTTTTTSCTTSHHHHHHHHHTTCSEEEEEEEECTTSCEEECCCSBSTTTSS------------------
T ss_pred cCCCCCEEEEeCCCCCCCCccHHHHHHHHHHcCCCEEEEEEEECCCCcEEEECCCccccccC------------------
Confidence 34567899999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccccccCHHHHhccCccccCCCccccccCCcCCCCCccccCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCCcHH
Q 004721 483 GSGIFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVT 562 (733)
Q Consensus 483 ~~g~~i~d~T~~EL~~L~~~~~~~~~~~~~~~~~~~~g~~~IptLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~ 562 (733)
++| .|.++||+||++|+++.|. ++.|.+ ++||||+|+|+++++. + +.++||||...... ..++
T Consensus 67 ~~~-~v~~~t~~el~~l~~~~~~---------~~~~~~-~~iptL~evl~~~~~~-~-~~l~iEiK~~~~~~----~~~~ 129 (252)
T 3qvq_A 67 GDG-LIYKTPLAELKQLDAGSWK---------GQEYQQ-ETIPTLLEAIEVISQY-G-MGLNLELKPCEGLE----EETI 129 (252)
T ss_dssp CCS-BGGGSCHHHHTTSCSSTTT---------CGGGTT-CCCCBHHHHHHHHHHT-T-CEEEEEECCCTTCH----HHHH
T ss_pred CCc-eeecCcHHHHhcCCCCCcc---------CccCCC-CcCcCHHHHHHHHhcc-C-cEEEEEecCCCCcc----HHHH
Confidence 777 8999999999999997652 345664 8999999999999864 3 38999999643211 1467
Q ss_pred HHHHHHHHHcCCCCCCCceEEEEeCCHHHHHHHHhc-cCceEEEEeecccchhhhHHHHHHHHHHhHhcCCCcccccCCc
Q 004721 563 NSVMEALGNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNS 641 (733)
Q Consensus 563 ~~v~~~l~~~~~~~~~~~~vii~Sfd~~~L~~lk~~-p~~~~~~l~~~~~~~~~~~~l~~i~~~a~~i~~~~~~i~~~~~ 641 (733)
+.+.+++++++... ++|+++||+++.|+.+++. |++++++++.....+ .. .++..+++ ..+.+.
T Consensus 130 ~~v~~~l~~~~~~~---~~vii~SF~~~~l~~~~~~~p~~~~~~l~~~~~~~----~~----~~~~~~~~--~~i~~~-- 194 (252)
T 3qvq_A 130 AASVEVLKQHWPQD---LPLLFSSFNYFALVSAKALWPEIARGYNVSAIPSA----WQ----ERLEHLDC--AGLHIH-- 194 (252)
T ss_dssp HHHHHHHHHHSCTT---SCEEEEESCHHHHHHHHHHCTTSCEEEECSSCCTT----HH----HHHHHHTC--SEEEEE--
T ss_pred HHHHHHHHHhCccc---CCEEEEeCCHHHHHHHHHHCCCCcEEEEEecCchh----HH----HHHHHcCC--eEEecc--
Confidence 78899999987641 4899999999999999999 999999998643211 11 22223332 233332
Q ss_pred cccccchHHHHHHHHCCCcEEEEecCCcccccccccCCChHHHHHHHHhhcCcCEEEeCChHHHHHHHHhh
Q 004721 642 AFITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPMTAARYRSKL 712 (733)
Q Consensus 642 ~~l~~~~~~v~~~~~~Gl~v~~wTvn~~~~~~~~~~~~d~~~e~~~~l~~~GVdgIiTD~P~~~~~~l~~~ 712 (733)
+...++++|+.+|++|++|++||+|+++ ++.+++ ++||||||||+|+.+.++++++
T Consensus 195 -~~~~~~~~v~~~~~~G~~v~~WTvn~~~-------------~~~~l~-~~GVdgIiTD~P~~~~~~l~~~ 250 (252)
T 3qvq_A 195 -QSFFDVQQVSDIKAAGYKVLAFTINDES-------------LALKLY-NQGLDAVFSDYPQKIQSAIDSH 250 (252)
T ss_dssp -GGGCCHHHHHHHHHTTCEEEEECCCCHH-------------HHHHHH-HTTCCEEEESSHHHHHHHHHHC
T ss_pred -hhhCCHHHHHHHHHCCCEEEEEcCCCHH-------------HHHHHH-HcCCCEEEeCCHHHHHHHHHHh
Confidence 2244789999999999999999999987 899997 9999999999999999999875
|
| >3qvq_A Phosphodiesterase OLEI02445; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta hydrolase, hydrolase; HET: MSE G3P; 1.60A {Oleispira antarctica} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-47 Score=397.50 Aligned_cols=242 Identities=19% Similarity=0.181 Sum_probs=196.6
Q ss_pred ccccCCCCCEEEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCCccccCccccccccccccc
Q 004721 84 WQTLTGDPPFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYL 163 (733)
Q Consensus 84 ~~~~~~~~~~viaHRG~~~~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l~rtt~~~~~~~~~~~~~~ 163 (733)
|++..+..|+||||||+++.+||||++||+.|++.|+| +||+|||+||||++||+||++|+|||++.+
T Consensus 2 ~~~~~~~~p~iiaHRG~~~~~pENTl~af~~A~~~G~d--~iE~DV~lT~Dg~~Vv~HD~~l~r~t~~~~---------- 69 (252)
T 3qvq_A 2 MQSAYSFLPQVIAHRGSSGQAPENTLASLHLAGQQGIK--WVEIDVMLSGDGIPVIFHDDYLSRTTDGDG---------- 69 (252)
T ss_dssp CSSGGGGCCSEEEETTTTTTSCTTSHHHHHHHHHTTCS--EEEEEEEECTTSCEEECCCSBSTTTSSCCS----------
T ss_pred CcccCCCCCEEEEeCCCCCCCCccHHHHHHHHHHcCCC--EEEEEEEECCCCcEEEECCCccccccCCCc----------
Confidence 45556678999999999999999999999999999999 999999999999999999999999999876
Q ss_pred cCCCCCCccccccCCHHhhccccccccccCCCCCCCCCCcccccHHHHHHhhC--CCceEeeccCchhhhhcCCcHHHHH
Q 004721 164 VNGVPTPGWFSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIK--PPGLWLNIQHDAFYAQHNLSMRSFV 241 (733)
Q Consensus 164 ~~g~~~~g~~v~d~T~~eL~~l~~~~~~~~~~~~~~g~~~~iptL~e~l~~~~--~~~l~iEiK~~~~~~~~~~~~~~~v 241 (733)
.|.++||+||++|+++.|+ ++.|.| ++||||+|+|++++ +..++||||....... .+++.+
T Consensus 70 ---------~v~~~t~~el~~l~~~~~~---~~~~~~--~~iptL~evl~~~~~~~~~l~iEiK~~~~~~~---~~~~~v 132 (252)
T 3qvq_A 70 ---------LIYKTPLAELKQLDAGSWK---GQEYQQ--ETIPTLLEAIEVISQYGMGLNLELKPCEGLEE---ETIAAS 132 (252)
T ss_dssp ---------BGGGSCHHHHTTSCSSTTT---CGGGTT--CCCCBHHHHHHHHHHTTCEEEEEECCCTTCHH---HHHHHH
T ss_pred ---------eeecCcHHHHhcCCCCCcc---CccCCC--CcCcCHHHHHHHHhccCcEEEEEecCCCCccH---HHHHHH
Confidence 7999999999999999875 456666 89999999999985 5789999995422111 366778
Q ss_pred HHHHhhcCC----ceeccCCHHHHHHHHHhcCCCcccchhhhcCCCccCCCCCcchhHHHhhHHHHHhhcccccCCcccc
Q 004721 242 LSVSRSVVV----NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTFASGILVPKDYI 317 (733)
Q Consensus 242 ~~~l~~~~~----~~i~SF~~~~l~~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~i~~~~~~i 317 (733)
.+++++++. ++++||+++.|++++++.| ++++++ +..... ..+... +.. ..+.++++.+..+
T Consensus 133 ~~~l~~~~~~~~~vii~SF~~~~l~~~~~~~p--~~~~~~-l~~~~~------~~~~~~---~~~--~~~~~i~~~~~~~ 198 (252)
T 3qvq_A 133 VEVLKQHWPQDLPLLFSSFNYFALVSAKALWP--EIARGY-NVSAIP------SAWQER---LEH--LDCAGLHIHQSFF 198 (252)
T ss_dssp HHHHHHHSCTTSCEEEEESCHHHHHHHHHHCT--TSCEEE-ECSSCC------TTHHHH---HHH--HTCSEEEEEGGGC
T ss_pred HHHHHHhCcccCCEEEEeCCHHHHHHHHHHCC--CCcEEE-EEecCc------hhHHHH---HHH--cCCeEEecchhhC
Confidence 888888754 5999999999999999998 778876 332110 111111 111 1244455544332
Q ss_pred ccCCCccCCCCChHHHHHHHHcCCeEEEeecCCCCCcccCCCCChHHHHHHHHhcCCcccceEEecCCCCccccchh
Q 004721 318 WPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPSAAVDC 394 (733)
Q Consensus 318 ~~~~~~~~~~~~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~~~~~l~~~G~~~VDgIiTD~P~~~~~~l~~ 394 (733)
++++|+.+|++|++|++||||++ ++|++++++| |||||||+|++++++++.
T Consensus 199 -----------~~~~v~~~~~~G~~v~~WTvn~~------------~~~~~l~~~G---VdgIiTD~P~~~~~~l~~ 249 (252)
T 3qvq_A 199 -----------DVQQVSDIKAAGYKVLAFTINDE------------SLALKLYNQG---LDAVFSDYPQKIQSAIDS 249 (252)
T ss_dssp -----------CHHHHHHHHHTTCEEEEECCCCH------------HHHHHHHHTT---CCEEEESSHHHHHHHHHH
T ss_pred -----------CHHHHHHHHHCCCEEEEEcCCCH------------HHHHHHHHcC---CCEEEeCCHHHHHHHHHH
Confidence 47899999999999999999864 8999999999 999999999999888765
|
| >2pz0_A Glycerophosphoryl diester phosphodiesterase; glycerophosphodiester phosphodiesterase, T. tengcongensis; 1.91A {Thermoanaerobacter tengcongensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-47 Score=396.20 Aligned_cols=235 Identities=20% Similarity=0.170 Sum_probs=193.6
Q ss_pred CCCEEEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCCccccCccccccccccccccCCCCC
Q 004721 90 DPPFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPT 169 (733)
Q Consensus 90 ~~~~viaHRG~~~~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l~rtt~~~~~~~~~~~~~~~~g~~~ 169 (733)
-+|.||||||+++.+||||++||+.|++.|+| +||+|||+||||++||+||.+|+||||+.+
T Consensus 10 ~~p~iiaHRG~~~~~PENTl~Af~~A~~~Gad--~iE~DV~lTkDG~lVv~HD~~l~Rtt~~~g---------------- 71 (252)
T 2pz0_A 10 MKTLVIAHRGDSKNVPENTIAAFKRAMELGAD--GIELDVQLTKDGHLVVIHDETVDRTTNGEG---------------- 71 (252)
T ss_dssp -CCEEEEETTTTTTSCTTSHHHHHHHHHHTCS--EEEEEEEECTTCCEEECSSSBSTTTSSCCS----------------
T ss_pred CCceEEEcCCCCCCCCcchHHHHHHHHHcCCC--EEEEEEEEecCCeEEEEcCCcccccCCCCc----------------
Confidence 47899999999999999999999999999999 999999999999999999999999999876
Q ss_pred CccccccCCHHhhccccccccccCCCCCCCCCCcccccHHHHHHhhC--CCceEeeccCchhhhhcCCcHHHHHHHHHhh
Q 004721 170 PGWFSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIK--PPGLWLNIQHDAFYAQHNLSMRSFVLSVSRS 247 (733)
Q Consensus 170 ~g~~v~d~T~~eL~~l~~~~~~~~~~~~~~g~~~~iptL~e~l~~~~--~~~l~iEiK~~~~~~~~~~~~~~~v~~~l~~ 247 (733)
.|.++||+||++|+++.|| ++.|.| ++||||+|+|++++ +..++||||.+... ...+++.+++++++
T Consensus 72 ---~v~~~t~~eL~~l~~~~~~---~~~~~~--~~iPtL~evL~~~~~~~~~l~iEiK~~~~~---~~~~~~~v~~~l~~ 140 (252)
T 2pz0_A 72 ---FVKDFTLEEIKKLDAGIKF---GEKFAG--ERIPTLYEVFELIGDKDFLVNIEIKSGIVL---YPGIEEKLIKAIKE 140 (252)
T ss_dssp ---BGGGSCHHHHTTSCSSTTT---CGGGTT--CCCCBHHHHHHHHTTSCCEEEEEECCSSCC---CTTHHHHHHHHHHH
T ss_pred ---chhhCcHHHHhhcCCCCCC---CCCCCC--CcCCCHHHHHHHhhhcCCeEEEEeCCCCcc---cHHHHHHHHHHHHh
Confidence 7999999999999999875 445666 89999999999996 47899999975322 12588999999999
Q ss_pred cCC---ceeccCCHHHHHHHHHhcCCCcccchhhhcCCCccCCCCCcchhHHHhhHHHHHhhcccccCCccccccCCCcc
Q 004721 248 VVV---NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTFASGILVPKDYIWPVDESL 324 (733)
Q Consensus 248 ~~~---~~i~SF~~~~l~~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~i~~~~~~i~~~~~~~ 324 (733)
+++ ++++||++..|++++++.| +.+++++ ..... ..+... ++. ..+.++++++..+
T Consensus 141 ~~~~~~vii~SF~~~~l~~~~~~~p--~~~~~~l-~~~~~------~~~~~~---~~~--~~~~~i~~~~~~~------- 199 (252)
T 2pz0_A 141 YNFEERVIISSFNHYSLRDVKKMAP--HLKIGLL-YQCGL------VEPWHM---ALR--MEAYSLHPFYFNI------- 199 (252)
T ss_dssp TTCTTTEEEEESBHHHHHHHHHHCT--TSEEEEE-ECSBC------SSTHHH---HHH--TTCSEEEEBGGGC-------
T ss_pred cCCCCCEEEEeCCHHHHHHHHHHCC--CCCEEEE-ecCcc------ccHHHH---HHH--cCCeEEecchhcC-------
Confidence 876 4899999999999999998 6787763 32211 011111 111 1245566554433
Q ss_pred CCCCChHHHHHHHHcCCeEEEeecCCCCCcccCCCCChHHHHHHHHhcCCcccceEEecCCCCccccch
Q 004721 325 YLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPSAAVD 393 (733)
Q Consensus 325 ~~~~~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~~~~~l~~~G~~~VDgIiTD~P~~~~~~l~ 393 (733)
++++|+.+|++|++|++||||++ +++++++++| |||||||+|+.++++++
T Consensus 200 ----~~~~v~~~~~~G~~v~~wTvn~~------------~~~~~l~~~G---vdgIiTD~P~~~~~~l~ 249 (252)
T 2pz0_A 200 ----IPELVEGCKKNGVKLFPWTVDRK------------EDMERMIKAG---VDGIITDDPETLINLVR 249 (252)
T ss_dssp ----CHHHHHHHHHTTCEECCBCCCSH------------HHHHHHHHHT---CSEEEESCHHHHHHHHC
T ss_pred ----CHHHHHHHHHCCCEEEEECCCCH------------HHHHHHHHcC---CCEEEcCCHHHHHHHHh
Confidence 47899999999999999999864 8999999999 99999999999877664
|
| >2oog_A Glycerophosphoryl diester phosphodiesterase; phosphatase, ST genomics, protein structure initiative, PSI; 2.20A {Staphylococcus aureus subsp} PDB: 2p76_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-47 Score=399.84 Aligned_cols=250 Identities=21% Similarity=0.227 Sum_probs=202.9
Q ss_pred cCCcceEEecCCCCCCCCCchHHHHHHH-HHCCCCeeecCceeecCCeEEEeeccccccccccCCCcCCCcccccccccc
Q 004721 404 KSANLLVISKNGASGDYPSCTNLAYQKA-ISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMA 482 (733)
Q Consensus 404 ~~~~~~iIaHRG~~~~~PENTl~Af~~A-~~~Gad~iE~DV~lTkDgv~Vv~HD~~L~rtt~v~~~~~~~r~~~~~~~~~ 482 (733)
.+.+|.||||||+++.+||||++||++| ++.|||+||+|||+||||++||+||.+|+|+||
T Consensus 20 ~~~~~~iiAHRG~~~~~PENTl~Af~~A~~~~Gad~iE~DV~lTkDG~lVv~HD~~l~Rtt~------------------ 81 (287)
T 2oog_A 20 TNERFTTIAHRGASGYAPEHTFQAYDKSHNELKASYIEIDLQRTKDGHLVAMHDETVNRTTN------------------ 81 (287)
T ss_dssp TSCSSEEEETTTTTTTSCSSSHHHHHHHHHTSCCSEEEEEEEECTTCCEEECSSSBSTTTSS------------------
T ss_pred CCCcceEEecCCCCCCCCchhHHHHHHHHHHcCCCEEEEEeeEccCCcEEEECCChhcccCC------------------
Confidence 3567899999999999999999999999 699999999999999999999999999999999
Q ss_pred cCcccccccCHHHHhccCccccCCCccccc-cCCcCCCCCccccCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCCcH
Q 004721 483 GSGIFSFSLIWDEIQTLIPQISNPYFKFKL-FRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSV 561 (733)
Q Consensus 483 ~~g~~i~d~T~~EL~~L~~~~~~~~~~~~~-~~~~~~~g~~~IptLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~ 561 (733)
++| .|.++||+||++|+++.|.. ..++ .....|. +++||||+|+|+.+++. +.++||||.+... ..+
T Consensus 82 ~~g-~v~d~T~~eL~~l~~~~~f~--~~~p~~~~~~~~-~~~iPtL~evL~~~~~~---~~l~IEiK~~~~~-----~~~ 149 (287)
T 2oog_A 82 GHG-KVEDYTLDELKQLDAGSWFN--KKYPKYARASYK-NAKVPTLDEILERYGPN---ANYYIETKSPDVY-----PGM 149 (287)
T ss_dssp CCS-BGGGSCHHHHTTSCSSHHHH--HHCGGGCCGGGT-TCCCCBHHHHHHHHCTT---SCEEEECCCTTTS-----TTH
T ss_pred CCe-ehhhCcHHHHHhcCCCcccC--ccCccccccccC-CccCCCHHHHHHhhCcC---ceEEEEECCCCCc-----chH
Confidence 778 89999999999999985421 1111 1122345 48999999999999754 4899999976421 357
Q ss_pred HHHHHHHHHHcCC-------CCCCCceEEEEeCCHHHHHHHHhc-cCceEEEEeecccc-hhhhHHHHHHHHHHhHhcCC
Q 004721 562 TNSVMEALGNAGY-------NKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIR-DALNQTIEDIKKFADSVVLS 632 (733)
Q Consensus 562 ~~~v~~~l~~~~~-------~~~~~~~vii~Sfd~~~L~~lk~~-p~~~~~~l~~~~~~-~~~~~~l~~i~~~a~~i~~~ 632 (733)
+++++++|+++++ . ++|+|+||++..|.++++. |++++++++..... +.....++.+..++.++.+
T Consensus 150 ~~~v~~~l~~~~~~~~~~~~~----~~vii~SF~~~~l~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~- 224 (287)
T 2oog_A 150 EEQLLASLKKHHLLNNNKLKN----GHVMIQSFSDESLKKIHRQNKHVPLVKLVDKGELQQFNDQRLKEIRSYAIGLGP- 224 (287)
T ss_dssp HHHHHHHHHHTTCSSHHHHHT----TSEEEEESCHHHHHHHHHHCTTSCEEEEECTTTGGGCCHHHHHHHHTTCSEEEE-
T ss_pred HHHHHHHHHHcCCcccccCCC----CCEEEEeCCHHHHHHHHHhCCCCcEEEEecCCcccccCHHHHHHHhhhheEEcc-
Confidence 8899999999998 5 7999999999999999999 99999999865321 1222223333333333332
Q ss_pred CcccccCCccccccchHHHHHHHHCCCcEEEEecCCcccccccccCCChHHHHHHHHhhcCcCEEEeCChHHHHHHHHh
Q 004721 633 KESVYPLNSAFITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPMTAARYRSK 711 (733)
Q Consensus 633 ~~~i~~~~~~~l~~~~~~v~~~~~~Gl~v~~wTvn~~~~~~~~~~~~d~~~e~~~~l~~~GVdgIiTD~P~~~~~~l~~ 711 (733)
.+...++++|+.+|++|+.|++||+|++. ++.+++ ++||||||||+|+.+.+++.+
T Consensus 225 ---------~~~~~~~~~v~~~~~~G~~v~~wTvn~~~-------------~~~~l~-~~GVdgIiTD~P~~~~~~~~~ 280 (287)
T 2oog_A 225 ---------DYTDLTEQNTHHLKDLGFIVHPYTVNEKA-------------DMLRLN-KYGVDGVFTNFADKYKEVIKE 280 (287)
T ss_dssp ---------BGGGCCHHHHHHHHHTTCEECCBCCCSHH-------------HHHHHH-HHTCSEEEESCHHHHHHHHHC
T ss_pred ---------cHhhcCHHHHHHHHHCCCeEEEEeCCCHH-------------HHHHHH-HcCCCEEEeCCHHHHHHHHhc
Confidence 12234689999999999999999999987 899887 999999999999999998875
|
| >2otd_A Glycerophosphodiester phosphodiesterase; structural genomics PSI-2, protein structure initiative, midwest center for STR genomics, hydrolase; 2.60A {Shigella flexneri} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-46 Score=388.37 Aligned_cols=234 Identities=15% Similarity=0.125 Sum_probs=190.7
Q ss_pred CCEEEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCCccccCccccccccccccccCCCCCC
Q 004721 91 PPFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTP 170 (733)
Q Consensus 91 ~~~viaHRG~~~~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l~rtt~~~~~~~~~~~~~~~~g~~~~ 170 (733)
.|+||||||+++.+||||++||+.|++.|+| +||+|||+||||++||+||.+|+||||+.+
T Consensus 6 ~~~iiaHRG~~~~~PENTl~Af~~A~~~Gad--~iE~DV~lTkDg~lVv~HD~~l~R~t~~~g----------------- 66 (247)
T 2otd_A 6 YPRIVAHRGGGKLAPENTLAAIDVGAKYGHK--MIEFDAKLSKDGEIFLLHDDNLERTSNGWG----------------- 66 (247)
T ss_dssp CCSEEETTTTTTSSCSSSHHHHHHHHHTTCS--EEEEEEEECTTCCEEECSSSBSSTTSSCCS-----------------
T ss_pred CCeEEECCCCCCCCCchhHHHHHHHHHcCCC--EEEEEeeEccCCcEEEECCCCccccCCCCc-----------------
Confidence 5789999999999999999999999999999 999999999999999999999999999876
Q ss_pred ccccccCCHHhhccccccccccCCCCCCCCCCcccccHHHHHHhhC--CCceEeeccCchhhhhcCCcHHHHHHHHHhhc
Q 004721 171 GWFSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIK--PPGLWLNIQHDAFYAQHNLSMRSFVLSVSRSV 248 (733)
Q Consensus 171 g~~v~d~T~~eL~~l~~~~~~~~~~~~~~g~~~~iptL~e~l~~~~--~~~l~iEiK~~~~~~~~~~~~~~~v~~~l~~~ 248 (733)
.|.++||+||++|+++.|+ ++.|.| ++||||+|+|++++ +..++||+|.+..... .+++.++++++++
T Consensus 67 --~v~~~t~~eL~~l~~g~~~---~~~~~~--~~iptL~evl~~~~~~~~~l~iEiK~~~~~~~---~~~~~v~~~l~~~ 136 (247)
T 2otd_A 67 --VAGELNWQDLLRVDAGSWY---SKAFKG--EPLPLLSQVAERCREHGMMANIEIKPTTGTGP---LTGKMVALAARQL 136 (247)
T ss_dssp --BGGGSCHHHHTTCCSSTTT---CGGGTT--CCCCBHHHHHHHHHHTTCEEEEEECCCTTCHH---HHHHHHHHHHHHH
T ss_pred --cHhhCcHHHHhhCCCCCcc---CCCCCC--CcCCCHHHHHHHHHhcCCEEEEEECCCCCcch---HHHHHHHHHHHHH
Confidence 7999999999999999875 445666 89999999999995 5789999996543211 2567788888765
Q ss_pred --C--CceeccCCHHHHHHHHHhcCCCcccchhhhcCCCccCCCCCcchhHHHhhHHHHHhhcccccCCccccccCCCcc
Q 004721 249 --V--VNYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTFASGILVPKDYIWPVDESL 324 (733)
Q Consensus 249 --~--~~~i~SF~~~~l~~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~i~~~~~~i~~~~~~~ 324 (733)
+ .++++||++..|++++++.| +.++++ +.... +..+... +..+ .+.++++++..+
T Consensus 137 ~~~~~~v~i~Sf~~~~l~~~~~~~p--~~~~~~-l~~~~------~~~~~~~---~~~~--~~~~i~~~~~~~------- 195 (247)
T 2otd_A 137 WAGMTPPLLSSFEIDALEAAQQAAP--ELPRGL-LLDEW------RDDWREL---TARL--GCVSIHLNHKLL------- 195 (247)
T ss_dssp TTTSCCCEEEESCHHHHHHHHHHCT--TSCEEE-EESSC------CTTHHHH---HHHH--TCSEEEEEGGGC-------
T ss_pred hcCcCCEEEEcCCHHHHHHHHHHCC--CCCEEE-EecCC------cccHHHH---HHHc--CCeEEecChHhC-------
Confidence 3 35899999999999999998 677776 33211 1111111 1111 245565554332
Q ss_pred CCCCChHHHHHHHHcCCeEEEeecCCCCCcccCCCCChHHHHHHHHhcCCcccceEEecCCCCccccch
Q 004721 325 YLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPSAAVD 393 (733)
Q Consensus 325 ~~~~~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~~~~~l~~~G~~~VDgIiTD~P~~~~~~l~ 393 (733)
++++|+.+|++|++|++||||++ +++++++++| |||||||+|+.++++++
T Consensus 196 ----~~~~v~~~~~~G~~v~~wTvn~~------------~~~~~l~~~G---vdgI~TD~p~~~~~~l~ 245 (247)
T 2otd_A 196 ----DKARVMQLKDAGLRILVYTVNKP------------QHAAELLRWG---VDCICTDAIDVIGPNFT 245 (247)
T ss_dssp ----CHHHHHHHHHTTCEEEEECCCCH------------HHHHHHHHHT---CSEEEESCTTTSCTTCC
T ss_pred ----CHHHHHHHHHCCCEEEEEccCCH------------HHHHHHHHcC---CCEEEeCCHHHHHHHHh
Confidence 47899999999999999999864 8999999999 99999999999987765
|
| >2oog_A Glycerophosphoryl diester phosphodiesterase; phosphatase, ST genomics, protein structure initiative, PSI; 2.20A {Staphylococcus aureus subsp} PDB: 2p76_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-47 Score=401.19 Aligned_cols=253 Identities=19% Similarity=0.244 Sum_probs=202.5
Q ss_pred CCccc-ccCCCCCEEEEeCCCCCCCCccHHHHHHHH-HHcCCCCcEEEeeeeecCCCeEEEecCCCCccccCcccccccc
Q 004721 81 TSRWQ-TLTGDPPFVVARGGFSGIFPDSSSIAYSLT-LITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQ 158 (733)
Q Consensus 81 ~~~~~-~~~~~~~~viaHRG~~~~~pENTl~af~~A-~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l~rtt~~~~~~~~~ 158 (733)
.+.|. ++.+.+|+||||||+++.+||||++||+.| ++.|+| +||+|||+||||++||+||.+|+||||+.+
T Consensus 12 ~~~~~~~~~~~~~~iiAHRG~~~~~PENTl~Af~~A~~~~Gad--~iE~DV~lTkDG~lVv~HD~~l~Rtt~~~g----- 84 (287)
T 2oog_A 12 AIQWHTNLTNERFTTIAHRGASGYAPEHTFQAYDKSHNELKAS--YIEIDLQRTKDGHLVAMHDETVNRTTNGHG----- 84 (287)
T ss_dssp --CCCCCTTSCSSEEEETTTTTTTSCSSSHHHHHHHHHTSCCS--EEEEEEEECTTCCEEECSSSBSTTTSSCCS-----
T ss_pred cccccccCCCCcceEEecCCCCCCCCchhHHHHHHHHHHcCCC--EEEEEeeEccCCcEEEECCChhcccCCCCe-----
Confidence 34453 456788999999999999999999999999 699999 999999999999999999999999999876
Q ss_pred ccccccCCCCCCccccccCCHHhhccccccccccCC-----CCCCCCCCcccccHHHHHHhhC-CCceEeeccCchhhhh
Q 004721 159 QKNYLVNGVPTPGWFSIDYTLNDLSNIILNQGVYSR-----TDKFDGNGFQILTVQDMARQIK-PPGLWLNIQHDAFYAQ 232 (733)
Q Consensus 159 ~~~~~~~g~~~~g~~v~d~T~~eL~~l~~~~~~~~~-----~~~~~g~~~~iptL~e~l~~~~-~~~l~iEiK~~~~~~~ 232 (733)
.|.++||+||++|+++.||... ...|.+ ++||||+|+|+.++ ++.++||||.+...
T Consensus 85 --------------~v~d~T~~eL~~l~~~~~f~~~~p~~~~~~~~~--~~iPtL~evL~~~~~~~~l~IEiK~~~~~-- 146 (287)
T 2oog_A 85 --------------KVEDYTLDELKQLDAGSWFNKKYPKYARASYKN--AKVPTLDEILERYGPNANYYIETKSPDVY-- 146 (287)
T ss_dssp --------------BGGGSCHHHHTTSCSSHHHHHHCGGGCCGGGTT--CCCCBHHHHHHHHCTTSCEEEECCCTTTS--
T ss_pred --------------ehhhCcHHHHHhcCCCcccCccCccccccccCC--ccCCCHHHHHHhhCcCceEEEEECCCCCc--
Confidence 7999999999999999876421 123455 89999999999986 47899999975432
Q ss_pred cCCcHHHHHHHHHhhcCC----------ceeccCCHHHHHHHHHhcCCCcccchhhhcCCCccCCCCCcchhHHHhhHHH
Q 004721 233 HNLSMRSFVLSVSRSVVV----------NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTF 302 (733)
Q Consensus 233 ~~~~~~~~v~~~l~~~~~----------~~i~SF~~~~l~~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~ 302 (733)
..+++.++++++++++ ++|+||+++.|++++++.| ++++++ ++...... .+. ...++.
T Consensus 147 --~~~~~~v~~~l~~~~~~~~~~~~~~~vii~SF~~~~l~~~~~~~p--~~~~~~-l~~~~~~~-----~~~--~~~~~~ 214 (287)
T 2oog_A 147 --PGMEEQLLASLKKHHLLNNNKLKNGHVMIQSFSDESLKKIHRQNK--HVPLVK-LVDKGELQ-----QFN--DQRLKE 214 (287)
T ss_dssp --TTHHHHHHHHHHHTTCSSHHHHHTTSEEEEESCHHHHHHHHHHCT--TSCEEE-EECTTTGG-----GCC--HHHHHH
T ss_pred --chHHHHHHHHHHHcCCcccccCCCCCEEEEeCCHHHHHHHHHhCC--CCcEEE-EecCCccc-----ccC--HHHHHH
Confidence 2478899999999876 4899999999999999998 678776 33221100 000 012344
Q ss_pred HHhhcccccCCccccccCCCccCCCCChHHHHHHHHcCCeEEEeecCCCCCcccCCCCChHHHHHHHHhcCCcccceEEe
Q 004721 303 IKTFASGILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLS 382 (733)
Q Consensus 303 ~~~~a~~i~~~~~~i~~~~~~~~~~~~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~~~~~l~~~G~~~VDgIiT 382 (733)
+..++.++++++..+ ++++|+.+|++|++|++||||++ ++|++++++| ||||||
T Consensus 215 ~~~~~~~v~~~~~~~-----------~~~~v~~~~~~G~~v~~wTvn~~------------~~~~~l~~~G---VdgIiT 268 (287)
T 2oog_A 215 IRSYAIGLGPDYTDL-----------TEQNTHHLKDLGFIVHPYTVNEK------------ADMLRLNKYG---VDGVFT 268 (287)
T ss_dssp HHTTCSEEEEBGGGC-----------CHHHHHHHHHTTCEECCBCCCSH------------HHHHHHHHHT---CSEEEE
T ss_pred HhhhheEEcccHhhc-----------CHHHHHHHHHCCCeEEEEeCCCH------------HHHHHHHHcC---CCEEEe
Confidence 555666676655433 47899999999999999999874 8899999999 999999
Q ss_pred cCCCCccccchhcc
Q 004721 383 DFPLTPSAAVDCFA 396 (733)
Q Consensus 383 D~P~~~~~~l~~~~ 396 (733)
|+|+.++++++.-.
T Consensus 269 D~P~~~~~~~~~~~ 282 (287)
T 2oog_A 269 NFADKYKEVIKEGH 282 (287)
T ss_dssp SCHHHHHHHHHC--
T ss_pred CCHHHHHHHHhccc
Confidence 99999888876644
|
| >3ks6_A Glycerophosphoryl diester phosphodiesterase; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.80A {Agrobacterium tumefaciens str} PDB: 3ks5_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-46 Score=388.41 Aligned_cols=242 Identities=12% Similarity=0.068 Sum_probs=201.2
Q ss_pred cceEEecCCCCCCCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeeccccccccccCCCcCCCcccccccccccCcc
Q 004721 407 NLLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGI 486 (733)
Q Consensus 407 ~~~iIaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L~rtt~v~~~~~~~r~~~~~~~~~~~g~ 486 (733)
.|+||||||+++.+||||++||++|++.|+|+||+|||+||||++||+||.+|+|+|| ++|
T Consensus 2 mp~iiaHRG~~~~~pENTl~af~~A~~~G~d~iE~DV~lT~Dg~~Vv~HD~~l~r~t~------------------~~g- 62 (250)
T 3ks6_A 2 MTRIASHRGGTLEFGDSTPHGFTATAAMALEEVEFDLHPTADGAIVVHHDPTLDATTD------------------MTG- 62 (250)
T ss_dssp CCEEEEETTTHHHHCTTCHHHHHHHHTSSSSEEEEEEEECTTSCEEECSSSBSTTTBS------------------CCS-
T ss_pred CceEEECCCCCCCCCcchHHHHHHHHHcCCCEEEEEEeEccCCCEEEECCCccccccC------------------CCC-
Confidence 4789999999999999999999999999999999999999999999999999999999 677
Q ss_pred cccccCHHHHhccCccccCCCccccccCCcCCCCCccccCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCCcHHHHHH
Q 004721 487 FSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVM 566 (733)
Q Consensus 487 ~i~d~T~~EL~~L~~~~~~~~~~~~~~~~~~~~g~~~IptLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~v~ 566 (733)
.|.++||+||++|+++.+ . +++||||+|+|+++++. + +.++||||.+.... ....++++++
T Consensus 63 ~v~~~t~~el~~l~~~~~--------------~-~~~iptL~evl~~~~~~-~-~~l~iEiK~~~~~~--~~~~~~~~v~ 123 (250)
T 3ks6_A 63 AIVDMTLAKVKTATIRYG--------------A-GSHPMTLEELCALYVDS-H-VNFRCEIKPGVDGL--PYEGFVALVI 123 (250)
T ss_dssp BGGGSCHHHHHHCCBTTS--------------T-TCCCEEHHHHHHHHTTC-S-CEEEEEECCCTTSC--CCTTHHHHHH
T ss_pred eeecCcHHHHhcCCCCCC--------------C-CccCcCHHHHHHHHhcc-C-cEEEEEeCCCcccC--cchHHHHHHH
Confidence 899999999999998753 2 48999999999999853 3 48999999753210 1236889999
Q ss_pred HHHHHcCCCCCCCceEEEEeCCHHHHHHHHhc-cCceEEEEeecccchhhhHHHHHHHHHHhHhcCCCcccccCCccccc
Q 004721 567 EALGNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNSAFIT 645 (733)
Q Consensus 567 ~~l~~~~~~~~~~~~vii~Sfd~~~L~~lk~~-p~~~~~~l~~~~~~~~~~~~l~~i~~~a~~i~~~~~~i~~~~~~~l~ 645 (733)
++|+++++. ++++++||++..|+.+++. |+++++++..... ....+..+..++..+++. .+.+. +..
T Consensus 124 ~~l~~~~~~----~~v~~~SF~~~~l~~~~~~~p~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~--~~~~~---~~~ 191 (250)
T 3ks6_A 124 AGLERHSML----ERTTFSSFLLASMDELWKATTRPRLWLVSPSVL---QQLGPGAVIETAIAHSIH--EIGVH---IDT 191 (250)
T ss_dssp HHHHHTTCG----GGEEEEESCHHHHHHHHHHCCSCEEEEECHHHH---HHHHHHHHHHHHHHTTCC--EEEEE---GGG
T ss_pred HHHHhcCCC----CCEEEEeCCHHHHHHHHHHCCCCcEEEEecccc---cccchhHHHHHHHhcCCC--EEecc---hhh
Confidence 999999988 8999999999999999999 9999987654210 011223344455555442 33332 234
Q ss_pred cchHHHHHHHHCCCcEEEEecCCcccccccccCCChHHHHHHHHhhcCcCEEEeCChHHHHHHHHhh
Q 004721 646 SATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPMTAARYRSKL 712 (733)
Q Consensus 646 ~~~~~v~~~~~~Gl~v~~wTvn~~~~~~~~~~~~d~~~e~~~~l~~~GVdgIiTD~P~~~~~~l~~~ 712 (733)
.++++|+.+|++|++|++||+|+++ ++.+++ ++|||||+||+|+.+.+++++.
T Consensus 192 ~~~~~v~~~~~~G~~V~~WTvn~~~-------------~~~~l~-~~GVDgIiTD~P~~~~~~~~~~ 244 (250)
T 3ks6_A 192 ADAGLMAQVQAAGLDFGCWAAHTPS-------------QITKAL-DLGVKVFTTDRPTLAIALRTEH 244 (250)
T ss_dssp CCHHHHHHHHHTTCEEEEECCCSHH-------------HHHHHH-HHTCSEEEESCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHCCCEEEEEeCCCHH-------------HHHHHH-HcCCCEEEcCCHHHHHHHHHHh
Confidence 5789999999999999999999987 899987 9999999999999999998865
|
| >2otd_A Glycerophosphodiester phosphodiesterase; structural genomics PSI-2, protein structure initiative, midwest center for STR genomics, hydrolase; 2.60A {Shigella flexneri} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-46 Score=387.68 Aligned_cols=240 Identities=17% Similarity=0.083 Sum_probs=195.0
Q ss_pred CcceEEecCCCCCCCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeeccccccccccCCCcCCCcccccccccccCc
Q 004721 406 ANLLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSG 485 (733)
Q Consensus 406 ~~~~iIaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L~rtt~v~~~~~~~r~~~~~~~~~~~g 485 (733)
+.|.||||||+++.+||||++||++|++.|+|+||+|||+||||++||+||.+|+|+|| ++|
T Consensus 5 ~~~~iiaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDg~lVv~HD~~l~R~t~------------------~~g 66 (247)
T 2otd_A 5 PYPRIVAHRGGGKLAPENTLAAIDVGAKYGHKMIEFDAKLSKDGEIFLLHDDNLERTSN------------------GWG 66 (247)
T ss_dssp CCCSEEETTTTTTSSCSSSHHHHHHHHHTTCSEEEEEEEECTTCCEEECSSSBSSTTSS------------------CCS
T ss_pred CCCeEEECCCCCCCCCchhHHHHHHHHHcCCCEEEEEeeEccCCcEEEECCCCccccCC------------------CCc
Confidence 45789999999999999999999999999999999999999999999999999999999 778
Q ss_pred ccccccCHHHHhccCccccCCCccccccCCcCCCCCccccCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCCcHHHHH
Q 004721 486 IFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSV 565 (733)
Q Consensus 486 ~~i~d~T~~EL~~L~~~~~~~~~~~~~~~~~~~~g~~~IptLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~v 565 (733)
.|.++||+||++|+++.|. ++.|.+ ++||||+|+|+++++. + +.++||||.+.... ..+++.+
T Consensus 67 -~v~~~t~~eL~~l~~g~~~---------~~~~~~-~~iptL~evl~~~~~~-~-~~l~iEiK~~~~~~----~~~~~~v 129 (247)
T 2otd_A 67 -VAGELNWQDLLRVDAGSWY---------SKAFKG-EPLPLLSQVAERCREH-G-MMANIEIKPTTGTG----PLTGKMV 129 (247)
T ss_dssp -BGGGSCHHHHTTCCSSTTT---------CGGGTT-CCCCBHHHHHHHHHHT-T-CEEEEEECCCTTCH----HHHHHHH
T ss_pred -cHhhCcHHHHhhCCCCCcc---------CCCCCC-CcCCCHHHHHHHHHhc-C-CEEEEEECCCCCcc----hHHHHHH
Confidence 8999999999999997542 245564 8999999999999854 3 38999999764321 1366789
Q ss_pred HHHHHHcCCCCCCCceEEEEeCCHHHHHHHHhc-cCceEEEEeecccchhhhHHHHHHHHHHhHhcCCCcccccCCcccc
Q 004721 566 MEALGNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNSAFI 644 (733)
Q Consensus 566 ~~~l~~~~~~~~~~~~vii~Sfd~~~L~~lk~~-p~~~~~~l~~~~~~~~~~~~l~~i~~~a~~i~~~~~~i~~~~~~~l 644 (733)
+++++++.... ++++++||++..|..+++. |++++++++.....+. .+ ++..+++ ..+.+. +.
T Consensus 130 ~~~l~~~~~~~---~~v~i~Sf~~~~l~~~~~~~p~~~~~~l~~~~~~~~----~~----~~~~~~~--~~i~~~---~~ 193 (247)
T 2otd_A 130 ALAARQLWAGM---TPPLLSSFEIDALEAAQQAAPELPRGLLLDEWRDDW----RE----LTARLGC--VSIHLN---HK 193 (247)
T ss_dssp HHHHHHHTTTS---CCCEEEESCHHHHHHHHHHCTTSCEEEEESSCCTTH----HH----HHHHHTC--SEEEEE---GG
T ss_pred HHHHHHHhcCc---CCEEEEcCCHHHHHHHHHHCCCCCEEEEecCCcccH----HH----HHHHcCC--eEEecC---hH
Confidence 99998872111 3899999999999999999 9999999986532211 12 2222332 223332 22
Q ss_pred ccchHHHHHHHHCCCcEEEEecCCcccccccccCCChHHHHHHHHhhcCcCEEEeCChHHHHHHHH
Q 004721 645 TSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPMTAARYRS 710 (733)
Q Consensus 645 ~~~~~~v~~~~~~Gl~v~~wTvn~~~~~~~~~~~~d~~~e~~~~l~~~GVdgIiTD~P~~~~~~l~ 710 (733)
..++++++.+|++|++|++||+|++. ++.+++ ++||||||||+|+.+.++++
T Consensus 194 ~~~~~~v~~~~~~G~~v~~wTvn~~~-------------~~~~l~-~~GvdgI~TD~p~~~~~~l~ 245 (247)
T 2otd_A 194 LLDKARVMQLKDAGLRILVYTVNKPQ-------------HAAELL-RWGVDCICTDAIDVIGPNFT 245 (247)
T ss_dssp GCCHHHHHHHHHTTCEEEEECCCCHH-------------HHHHHH-HHTCSEEEESCTTTSCTTCC
T ss_pred hCCHHHHHHHHHCCCEEEEEccCCHH-------------HHHHHH-HcCCCEEEeCCHHHHHHHHh
Confidence 34689999999999999999999987 888887 99999999999998876654
|
| >1ydy_A Glycerophosphoryl diester phosphodiesterase; structural genomics, PSI, protein structu initiative; 1.70A {Escherichia coli} SCOP: c.1.18.3 PDB: 1t8q_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-46 Score=404.90 Aligned_cols=292 Identities=22% Similarity=0.272 Sum_probs=218.3
Q ss_pred CCcceEEecCCCCCCCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeeccccccccccCCCcCCCcccccccccccC
Q 004721 405 SANLLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGS 484 (733)
Q Consensus 405 ~~~~~iIaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L~rtt~v~~~~~~~r~~~~~~~~~~~ 484 (733)
+.+|.||||||+++.+||||++||++|+++|||+||+|||+||||++||+||.+|+|+||++. .|++|+.+ .|+
T Consensus 28 ~~~~~iiaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDg~lVv~HD~~l~rtt~~~~-~f~~~~~~-----~g~ 101 (356)
T 1ydy_A 28 SNEKIVIAHRGASGYLPEHTLPAKAMAYAQGADYLEQDLVMTKDDNLVVLHDHYLDRVTDVAD-RFPDRARK-----DGR 101 (356)
T ss_dssp -CCCEEEETTTTTTTSSTTCHHHHHHHHHTTCSEEEEEEEECTTSCEEECSSSBCTTTBSHHH-HSTTCCCT-----TSC
T ss_pred CCCceEEEeCCCCCCCCcchHHHHHHHHHcCCCEEEeeeEECCCCcEEEeCCChHHhhcCccc-cccccccc-----CCC
Confidence 457899999999999999999999999999999999999999999999999999999999654 35555532 255
Q ss_pred cccccccCHHHHhccCccccCCC--cc---ccccCCcCCCCCccccCHHHHHHHHHhc-----CCCceEEEEecchhHHH
Q 004721 485 GIFSFSLIWDEIQTLIPQISNPY--FK---FKLFRNPKNKNAGKFMKLSDFLEMAKNA-----NSLSGVLISIENAVYLA 554 (733)
Q Consensus 485 g~~i~d~T~~EL~~L~~~~~~~~--~~---~~~~~~~~~~g~~~IptLeEvL~~~~~~-----~~~~~l~iEiK~~~~~~ 554 (733)
| +|.++||+||++|+++.|... +. .+..+.+...++++||||+|+|+++++. .+ ++++||||.+....
T Consensus 102 ~-~v~d~T~~eL~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~iptL~evl~~~~~~~~~~~~~-~~l~iEiK~~~~~~ 179 (356)
T 1ydy_A 102 Y-YAIDFTLDEIKSLKFTEGFDIENGKKVQTYPGRFPMGKSDFRVHTFEEEIEFVQGLNHSTGKN-IGIYPEIKAPWFHH 179 (356)
T ss_dssp C-BGGGSCHHHHHHSCBCSCEEEETTEEEESSTTSSCTTCSCCCCCBHHHHHHHHHHHHHHHSCC-CEEEEEECCHHHHH
T ss_pred c-chhhCcHHHHHhCCCCccccccccccccccccccccccCCCcCCCHHHHHHHHHHhhhcccCC-ceEEEeecCccccc
Confidence 6 899999999999999865210 00 0111222222358999999999999862 13 48999999876433
Q ss_pred hhcCCcHHHHHHHHHHHcCCCCCCCceEEEEeCCHHHHHHHHhc------cCceEEEEeeccc-----------------
Q 004721 555 EKQGMSVTNSVMEALGNAGYNKQTALKVMIQSTDSSVLMKLREK------TSYELVYKVKENI----------------- 611 (733)
Q Consensus 555 ~~~~~~~~~~v~~~l~~~~~~~~~~~~vii~Sfd~~~L~~lk~~------p~~~~~~l~~~~~----------------- 611 (733)
. .+..++++++++|+++++... .++|+|+|||+..|+++|+. |++++++++....
T Consensus 180 ~-~~~~~~~~v~~~l~~~~~~~~-~~~v~i~SF~~~~l~~~~~~~~p~~~p~~~~~~L~~~~~~~~~~~~~~~~~~~~~~ 257 (356)
T 1ydy_A 180 Q-EGKDIAAKTLEVLKKYGYTGK-DDKVYLQCFDADELKRIKNELEPKMGMELNLVQLIAYTDWNETQQKQPDGSWVNYN 257 (356)
T ss_dssp H-TTCCHHHHHHHHHHHTTCCST-TSSBEEEESCHHHHHHHHHTHHHHHTCCCEEEEEECCGGGCCCEEECTTSCEEECC
T ss_pred c-cchhHHHHHHHHHHHcCCCCC-CCCEEEEcCCHHHHHHHHhhcccccCCCceEEEEeccCcccccccccccccccccc
Confidence 1 345689999999999998421 16999999999999999986 7899999986421
Q ss_pred -ch-hhhHHHHHHHHHHhHhcCCCcccccCC-ccccccchHHHHHHHHCCCcEEEEecCCcccccccccCCChHHHHHHH
Q 004721 612 -RD-ALNQTIEDIKKFADSVVLSKESVYPLN-SAFITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTY 688 (733)
Q Consensus 612 -~~-~~~~~l~~i~~~a~~i~~~~~~i~~~~-~~~l~~~~~~v~~~~~~Gl~v~~wTvn~~~~~~~~~~~~d~~~e~~~~ 688 (733)
.+ .++..+..+..+++++++....+.+.. ......++++|+.+|++|++|++||||++. ++ .|..|+...+.++
T Consensus 258 ~~~~~~~~~l~~~~~~a~~i~p~~~~~~~~~~~~~~~~~~~~v~~ah~~Gl~V~~WTvn~~~--l~-~~~~d~~~~~~~~ 334 (356)
T 1ydy_A 258 YDWMFKPGAMKQVAEYADGIGPDYHMLIEETSQPGNIKLTGMVQDAQQNKLVVHPYTVRSDK--LP-EYTPDVNQLYDAL 334 (356)
T ss_dssp CGGGGSTTHHHHHTTTCSEEEEBGGGTBCTTCBTTBCCBCSHHHHHHHTTCEECCBCBCTTS--CC-TTCSSHHHHHHHH
T ss_pred hhhhcchhhHHHHHhhCeEEccCHHHhccccccccccCCHHHHHHHHHCCCEEEEEEECccc--cc-ccccCHHHHHHHH
Confidence 00 022345566666777777654443211 011123588999999999999999999874 33 3556666433654
Q ss_pred HhhcCcCEEEeCChHHHHHHH
Q 004721 689 YEGAGIDGVITEFPMTAARYR 709 (733)
Q Consensus 689 l~~~GVdgIiTD~P~~~~~~l 709 (733)
+.++||||||||+|+.+.+++
T Consensus 335 l~~~GVDgIiTD~P~~~~~~l 355 (356)
T 1ydy_A 335 YNKAGVNGLFTDFPDKAVKFL 355 (356)
T ss_dssp HTTSCCSEEEESCHHHHHHHH
T ss_pred HHHcCCCEEEeCCHHHHHHhh
Confidence 459999999999999999876
|
| >3l12_A Putative glycerophosphoryl diester phosphodiester; struct genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.60A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-45 Score=394.02 Aligned_cols=283 Identities=17% Similarity=0.206 Sum_probs=209.5
Q ss_pred ccccCCCCCcCCcceEEecCCCCCCCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeeccccccccccCCCcCCCcc
Q 004721 395 FAHLGKNASKSANLLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSIT 474 (733)
Q Consensus 395 ~~~~~~~~~~~~~~~iIaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L~rtt~v~~~~~~~r~ 474 (733)
|.+.+.......++.||||||+++.+||||++||++|+++|+|+||+|||+||||++||+||.+|+|+|+.+.
T Consensus 5 ~~~~~~~~~~~~~~~iiaHRG~~~~~PENTl~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l~rtt~~~~------- 77 (313)
T 3l12_A 5 FSQLEGLRGHPSVVRVIGHRGARGVMPENTLEGFAFTLAAGVRALEFDVVMTADGVPVVTHNHHLANAMTRDG------- 77 (313)
T ss_dssp CGGGGGTCCBTTBCEEEEETTTTTTSCTTCHHHHHHHHHTTCCEEEEEEEECTTSCEEECSSSBCCTTTCBCT-------
T ss_pred CccccccccCCCCeEEEEcCCCCCCCCccHHHHHHHHHHcCCCEEEEEEEECCCCCEEEECCchhcccccccC-------
Confidence 3344444455567899999999999999999999999999999999999999999999999999999976331
Q ss_pred ccccccc--ccCcccccccCHHHHhccCccccCCC---ccccccCCcCCCCCccccCHHHHHHHHHhcC--CCceEEEEe
Q 004721 475 TTIPEIM--AGSGIFSFSLIWDEIQTLIPQISNPY---FKFKLFRNPKNKNAGKFMKLSDFLEMAKNAN--SLSGVLISI 547 (733)
Q Consensus 475 ~~~~~~~--~~~g~~i~d~T~~EL~~L~~~~~~~~---~~~~~~~~~~~~g~~~IptLeEvL~~~~~~~--~~~~l~iEi 547 (733)
+|. .+.+..|.++||+||++|+++.+.+. +.. .+....+. +++||||+|+|+++++.+ + +.++|||
T Consensus 78 ----~G~~~~~~~~~v~~~t~~eL~~l~~~~~~~~~~~~~~-~~~~~~~~-g~~iptL~evl~~~~~~~~~~-~~l~IEi 150 (313)
T 3l12_A 78 ----QGHWLTGAERQVAEMTYAEIRALDVGGLDGRTVYGRR-FPDQAFLT-GIHVPRLGELLDLCAGYGDQA-PYLLLEL 150 (313)
T ss_dssp ----TSCBCCSSCCBGGGSCHHHHHTSBCSSCCTTSHHHHH-STTSCCCS-SCCCCBHHHHHHHHHTTGGGC-CEEEEEE
T ss_pred ----CCcccCCCCcchhcCcHHHHhhCCCCCcccccccccc-CccccccC-CCcCCCHHHHHHHHHhcCCCC-ceEEEEE
Confidence 111 12224899999999999999863221 000 00111233 389999999999998731 3 4899999
Q ss_pred cchhHHHhh--cCCcHHHHHHHHHHHcCCCCCCCceEEEEeCCHHHHHHHHhc-cCceEEEEeecccchhhh---HHH--
Q 004721 548 ENAVYLAEK--QGMSVTNSVMEALGNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDALN---QTI-- 619 (733)
Q Consensus 548 K~~~~~~~~--~~~~~~~~v~~~l~~~~~~~~~~~~vii~Sfd~~~L~~lk~~-p~~~~~~l~~~~~~~~~~---~~l-- 619 (733)
|.+...... ....++++++++|+++++. ++|+|+||++..|++++++ |++++++++......... ...
T Consensus 151 K~~~~~~~~~~~~~~~~~~v~~~l~~~~~~----~~v~i~SF~~~~l~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~ 226 (313)
T 3l12_A 151 KSDPALMHDHAARAEMVAAVLADVRRYRME----PRTVMHSFDWALLGECRRQAPDLPTSYLSQLPENADDPGEDSAKPV 226 (313)
T ss_dssp CCCGGGTTCHHHHHHHHHHHHHHHHHTTCG----GGEEEEESCHHHHHHHHHHCTTSCEEEEECCCC-------------
T ss_pred ccCCccccccccHHHHHHHHHHHHHHcCCC----CCEEEEcCCHHHHHHHHHHCCCCcEEEEeccccccccccccccccc
Confidence 976432100 0025789999999999998 8999999999999999999 999999998653210000 000
Q ss_pred --------HHHHHHHhHhcCCCcccccCCccccccchHHHHHHHHCCCcEEEEecCCcccccccccCCChHHHHHHHHhh
Q 004721 620 --------EDIKKFADSVVLSKESVYPLNSAFITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEG 691 (733)
Q Consensus 620 --------~~i~~~a~~i~~~~~~i~~~~~~~l~~~~~~v~~~~~~Gl~v~~wTvn~~~~~~~~~~~~d~~~e~~~~l~~ 691 (733)
..+...+..+++ ..+.+. +...++++|+.+|++|++|++||||+++ ++.+++ +
T Consensus 227 ~~~~~~~~~~l~~~~~~~~~--~~~~~~---~~~~~~~~v~~~~~~Gl~V~~WTVn~~~-------------~~~~l~-~ 287 (313)
T 3l12_A 227 GPDYDRMTESLPQAVASAGG--QLWCPY---FLDVTPELVAEAHDLGLIVLTWTVNEPE-------------DIRRMA-T 287 (313)
T ss_dssp CCCTTTCCSCHHHHHHHHTC--SEEEEB---GGGCCHHHHHHHHHTTCEEEEBCCCSHH-------------HHHHHH-H
T ss_pred cccchhccccHHHHHHHhCC--cEEecc---hhcCCHHHHHHHHHCCCEEEEEcCCCHH-------------HHHHHH-H
Confidence 000112222332 233332 2245789999999999999999999997 899997 9
Q ss_pred cCcCEEEeCChHHHHHHHHhhcc
Q 004721 692 AGIDGVITEFPMTAARYRSKLVR 714 (733)
Q Consensus 692 ~GVdgIiTD~P~~~~~~l~~~~~ 714 (733)
+||||||||+|+.+++++++++.
T Consensus 288 ~GVDgIiTD~P~~~~~~l~~~g~ 310 (313)
T 3l12_A 288 TGVDGIVTDYPGRTQRILIDMGL 310 (313)
T ss_dssp HTCSEEEESCHHHHHHHHHHTTC
T ss_pred cCCCEEEeCCHHHHHHHHHhcCc
Confidence 99999999999999999998764
|
| >2o55_A Putative glycerophosphodiester phosphodiesterase; beta barrel, structural genomics, protein structure initiati 2; 2.81A {Galdieria sulphuraria} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-45 Score=381.19 Aligned_cols=242 Identities=13% Similarity=0.116 Sum_probs=197.1
Q ss_pred CCcceEEecCCCC--CCCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeecc---ccccccccCCCcCCCccccccc
Q 004721 405 SANLLVISKNGAS--GDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFI---NLINSTNAAQSKFNSITTTIPE 479 (733)
Q Consensus 405 ~~~~~iIaHRG~~--~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~---~L~rtt~v~~~~~~~r~~~~~~ 479 (733)
..+|+||||||++ +.+||||++||++|++.|||+||+|||+||||++||+||. +|+|+||
T Consensus 4 ~~~~~iiaHRG~~~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDg~lVv~HD~~~~~l~Rtt~--------------- 68 (258)
T 2o55_A 4 VIIPKIVGHRGVGKEGLAPENTLRSFVLCMERNIPYIETDLRVCKTGEIVLFHGTPEGTIPFYKD--------------- 68 (258)
T ss_dssp CCCCEEEEETTTTTSTTSCTTCHHHHHHHHHTTCCEEEEEEEECTTSCEEECCCSTTSBCTTSTT---------------
T ss_pred ccCceEEECCCCCCCCCCCccHHHHHHHHHHcCcCEEEEEEEEecCCeEEEEeCCCCccceeeCC---------------
Confidence 3568999999999 9999999999999999999999999999999999999999 9999999
Q ss_pred ccccCcccccccCHHHHhccCccccCCCccccccCCcCCCCCccccCHHHHHHHHHhcC-CCceEEEEecchhHHHhhcC
Q 004721 480 IMAGSGIFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNAN-SLSGVLISIENAVYLAEKQG 558 (733)
Q Consensus 480 ~~~~~g~~i~d~T~~EL~~L~~~~~~~~~~~~~~~~~~~~g~~~IptLeEvL~~~~~~~-~~~~l~iEiK~~~~~~~~~~ 558 (733)
++| .|.++||+||++|+++. +++||||+|+|+++++.+ + +.++||||.+.... ..
T Consensus 69 ---~~g-~v~~~t~~eL~~l~~~~-----------------~~~iptL~evl~~~~~~~~~-~~l~iEiK~~~~~~--~~ 124 (258)
T 2o55_A 69 ---GTS-RIGDLSLEELKRLDVGG-----------------GHTIPSLEELFVAIEEQKFN-LKLNLELKGEEWKR--KE 124 (258)
T ss_dssp ---TTC-BGGGSCHHHHTTCBSSS-----------------SCBCCBHHHHHHHHHHSCSC-CEEEEEECCSSSSS--TT
T ss_pred ---CCe-ehhhCcHHHHhhcCCCC-----------------CCccCCHHHHHHHhhhhcCc-eEEEEEEccCCccc--cc
Confidence 777 89999999999998751 489999999999999742 2 48999999754200 11
Q ss_pred CcHHHHHHHHHHHcCCCCCCCceEEEEeCCHHHHHHHHhc-cCceEEEEe-ecccchhhhHHHHHHHHHHhHhcCCCccc
Q 004721 559 MSVTNSVMEALGNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKV-KENIRDALNQTIEDIKKFADSVVLSKESV 636 (733)
Q Consensus 559 ~~~~~~v~~~l~~~~~~~~~~~~vii~Sfd~~~L~~lk~~-p~~~~~~l~-~~~~~~~~~~~l~~i~~~a~~i~~~~~~i 636 (733)
..+++.++++|+++++. ++|+|+||++..|+.++++ |++++++++ .....+.. ..+.. +..+++ ..+
T Consensus 125 ~~~~~~v~~~l~~~~~~----~~v~i~Sf~~~~l~~~~~~~p~~~~~~l~~~~~~~~~~-~~~~~----~~~~~~--~~v 193 (258)
T 2o55_A 125 SGDHQRLLLLVEKYHMQ----ERVDYCSFHHEALAHLKALCPDVKITYLFNYMGQPTPL-DFVEQ----ACYGDA--NGV 193 (258)
T ss_dssp SSHHHHHHHHHHTTTCG----GGEEEEESSHHHHHHHHHHCTTCEEEEECCTTSCCCCT-THHHH----HHHTTC--SEE
T ss_pred hHHHHHHHHHHHHcCCC----CCEEEEeCCHHHHHHHHHHCCCCcEEEEEeCCCCCCHH-HHHHH----HHhcCC--eEE
Confidence 36889999999999988 8999999999999999999 999999998 43211110 01111 222322 223
Q ss_pred ccCCccccccchHHHHHHHHCCCcEEEEec----CCcccccccccCCChHHHHHHHHhhcCcCEEEeCChHHHHHHHHhh
Q 004721 637 YPLNSAFITSATDIVQRLQSFKLPVYVETF----SNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPMTAARYRSKL 712 (733)
Q Consensus 637 ~~~~~~~l~~~~~~v~~~~~~Gl~v~~wTv----n~~~~~~~~~~~~d~~~e~~~~l~~~GVdgIiTD~P~~~~~~l~~~ 712 (733)
.+. +...++++|+.+|++|++|++||+ |++. ++.+++ ++|||||+||+|+.+.+++++.
T Consensus 194 ~~~---~~~~~~~~v~~~~~~G~~v~~wTv~~~~n~~~-------------~~~~l~-~~GvdgI~TD~p~~~~~~l~~~ 256 (258)
T 2o55_A 194 SML---FHYLTKEQVCTAHEKGLSVTVWMPWIFDDSEE-------------DWKKCL-ELQVDLICSNYPFGLMNFLSNI 256 (258)
T ss_dssp EEE---GGGCCHHHHHHHHHTTCEEEEECCTTCCCCHH-------------HHHHHH-HHTCSEEEESCHHHHHHHHTC-
T ss_pred ecC---hhhcCHHHHHHHHHCCCEEEEeeCCCCCCCHH-------------HHHHHH-HcCCCEEEeCCHHHHHHHHHHh
Confidence 332 223468999999999999999999 7776 888886 9999999999999999999865
Q ss_pred c
Q 004721 713 V 713 (733)
Q Consensus 713 ~ 713 (733)
+
T Consensus 257 ~ 257 (258)
T 2o55_A 257 S 257 (258)
T ss_dssp -
T ss_pred c
Confidence 4
|
| >3l12_A Putative glycerophosphoryl diester phosphodiester; struct genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.60A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-45 Score=393.77 Aligned_cols=263 Identities=15% Similarity=0.151 Sum_probs=194.7
Q ss_pred CCCEEEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCCccccCccccccccccccccCCCCC
Q 004721 90 DPPFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPT 169 (733)
Q Consensus 90 ~~~~viaHRG~~~~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l~rtt~~~~~~~~~~~~~~~~g~~~ 169 (733)
+++.||||||+++.+||||++||+.|++.|+| +||+|||+||||++||+||++|+|||+... +|..+
T Consensus 16 ~~~~iiaHRG~~~~~PENTl~Af~~A~~~G~d--~iE~DV~lTkDg~~Vv~HD~~l~rtt~~~~-----------~G~~~ 82 (313)
T 3l12_A 16 SVVRVIGHRGARGVMPENTLEGFAFTLAAGVR--ALEFDVVMTADGVPVVTHNHHLANAMTRDG-----------QGHWL 82 (313)
T ss_dssp TBCEEEEETTTTTTSCTTCHHHHHHHHHTTCC--EEEEEEEECTTSCEEECSSSBCCTTTCBCT-----------TSCBC
T ss_pred CCeEEEEcCCCCCCCCccHHHHHHHHHHcCCC--EEEEEEEECCCCCEEEECCchhcccccccC-----------CCccc
Confidence 56889999999999999999999999999999 999999999999999999999999964322 12111
Q ss_pred C--ccccccCCHHhhcccccccccc------CC--CCCCCCCCcccccHHHHHHhhC-----CCceEeeccCchhhhhc-
Q 004721 170 P--GWFSIDYTLNDLSNIILNQGVY------SR--TDKFDGNGFQILTVQDMARQIK-----PPGLWLNIQHDAFYAQH- 233 (733)
Q Consensus 170 ~--g~~v~d~T~~eL~~l~~~~~~~------~~--~~~~~g~~~~iptL~e~l~~~~-----~~~l~iEiK~~~~~~~~- 233 (733)
+ ++.|.++||+||++|+++.|.. .+ ...+.| ++||||+|+|++++ ++.++||||.+......
T Consensus 83 ~~~~~~v~~~t~~eL~~l~~~~~~~~~~~~~~~~~~~~~~g--~~iptL~evl~~~~~~~~~~~~l~IEiK~~~~~~~~~ 160 (313)
T 3l12_A 83 TGAERQVAEMTYAEIRALDVGGLDGRTVYGRRFPDQAFLTG--IHVPRLGELLDLCAGYGDQAPYLLLELKSDPALMHDH 160 (313)
T ss_dssp CSSCCBGGGSCHHHHHTSBCSSCCTTSHHHHHSTTSCCCSS--CCCCBHHHHHHHHHTTGGGCCEEEEEECCCGGGTTCH
T ss_pred CCCCcchhcCcHHHHhhCCCCCccccccccccCccccccCC--CcCCCHHHHHHHHHhcCCCCceEEEEEccCCcccccc
Confidence 1 2589999999999999997321 01 112334 89999999999985 47899999976432210
Q ss_pred --CCcHHHHHHHHHhhcCC---ceeccCCHHHHHHHHHhcCCCcccchhhhcCCCccCC------C-CCcchhHHHhhH-
Q 004721 234 --NLSMRSFVLSVSRSVVV---NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEP------T-TNQTYGSLLKNL- 300 (733)
Q Consensus 234 --~~~~~~~v~~~l~~~~~---~~i~SF~~~~l~~l~~~~p~~~~~~~~~l~~~~~~~~------~-~~~~~~~~~~~l- 300 (733)
...+++.++++|+++++ ++|+||+++.|++++++.| +++++++......... . ....+......+
T Consensus 161 ~~~~~~~~~v~~~l~~~~~~~~v~i~SF~~~~l~~~~~~~p--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 238 (313)
T 3l12_A 161 AARAEMVAAVLADVRRYRMEPRTVMHSFDWALLGECRRQAP--DLPTSYLSQLPENADDPGEDSAKPVGPDYDRMTESLP 238 (313)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCT--TSCEEEEECCCC-------------CCCTTTCCSCHH
T ss_pred ccHHHHHHHHHHHHHHcCCCCCEEEEcCCHHHHHHHHHHCC--CCcEEEEeccccccccccccccccccccchhccccHH
Confidence 12578899999999886 4999999999999999998 7888863322110000 0 000000000001
Q ss_pred HHHHh-hcccccCCccccccCCCccCCCCChHHHHHHHHcCCeEEEeecCCCCCcccCCCCChHHHHHHHHhcCCcccce
Q 004721 301 TFIKT-FASGILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDG 379 (733)
Q Consensus 301 ~~~~~-~a~~i~~~~~~i~~~~~~~~~~~~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~~~~~l~~~G~~~VDg 379 (733)
..++. .+.++++.+..+ ++++|+.+|++|++|++||||++ ++|++++++| |||
T Consensus 239 ~~~~~~~~~~~~~~~~~~-----------~~~~v~~~~~~Gl~V~~WTVn~~------------~~~~~l~~~G---VDg 292 (313)
T 3l12_A 239 QAVASAGGQLWCPYFLDV-----------TPELVAEAHDLGLIVLTWTVNEP------------EDIRRMATTG---VDG 292 (313)
T ss_dssp HHHHHHTCSEEEEBGGGC-----------CHHHHHHHHHTTCEEEEBCCCSH------------HHHHHHHHHT---CSE
T ss_pred HHHHHhCCcEEecchhcC-----------CHHHHHHHHHCCCEEEEEcCCCH------------HHHHHHHHcC---CCE
Confidence 11111 145555554432 47899999999999999999874 8999999999 999
Q ss_pred EEecCCCCccccchhc
Q 004721 380 VLSDFPLTPSAAVDCF 395 (733)
Q Consensus 380 IiTD~P~~~~~~l~~~ 395 (733)
||||+|+.++++++..
T Consensus 293 IiTD~P~~~~~~l~~~ 308 (313)
T 3l12_A 293 IVTDYPGRTQRILIDM 308 (313)
T ss_dssp EEESCHHHHHHHHHHT
T ss_pred EEeCCHHHHHHHHHhc
Confidence 9999999998887653
|
| >3ks6_A Glycerophosphoryl diester phosphodiesterase; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.80A {Agrobacterium tumefaciens str} PDB: 3ks5_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-46 Score=384.21 Aligned_cols=234 Identities=15% Similarity=0.073 Sum_probs=189.6
Q ss_pred CCEEEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCCccccCccccccccccccccCCCCCC
Q 004721 91 PPFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTP 170 (733)
Q Consensus 91 ~~~viaHRG~~~~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l~rtt~~~~~~~~~~~~~~~~g~~~~ 170 (733)
.|+||||||+++.+||||++||+.|++.|+| +||+|||+||||++||+||++|+|||++.+
T Consensus 2 mp~iiaHRG~~~~~pENTl~af~~A~~~G~d--~iE~DV~lT~Dg~~Vv~HD~~l~r~t~~~g----------------- 62 (250)
T 3ks6_A 2 MTRIASHRGGTLEFGDSTPHGFTATAAMALE--EVEFDLHPTADGAIVVHHDPTLDATTDMTG----------------- 62 (250)
T ss_dssp CCEEEEETTTHHHHCTTCHHHHHHHHTSSSS--EEEEEEEECTTSCEEECSSSBSTTTBSCCS-----------------
T ss_pred CceEEECCCCCCCCCcchHHHHHHHHHcCCC--EEEEEEeEccCCCEEEECCCccccccCCCC-----------------
Confidence 4889999999999999999999999999999 999999999999999999999999999876
Q ss_pred ccccccCCHHhhccccccccccCCCCCCCCCCcccccHHHHHHhhC--CCceEeeccCchhhhhcCCcHHHHHHHHHhhc
Q 004721 171 GWFSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIK--PPGLWLNIQHDAFYAQHNLSMRSFVLSVSRSV 248 (733)
Q Consensus 171 g~~v~d~T~~eL~~l~~~~~~~~~~~~~~g~~~~iptL~e~l~~~~--~~~l~iEiK~~~~~~~~~~~~~~~v~~~l~~~ 248 (733)
.|.++||+||++|+++.| . +++||||+|+|++++ ++.++||||.+.... ....+++.++++++++
T Consensus 63 --~v~~~t~~el~~l~~~~~--------~--~~~iptL~evl~~~~~~~~~l~iEiK~~~~~~-~~~~~~~~v~~~l~~~ 129 (250)
T 3ks6_A 63 --AIVDMTLAKVKTATIRYG--------A--GSHPMTLEELCALYVDSHVNFRCEIKPGVDGL-PYEGFVALVIAGLERH 129 (250)
T ss_dssp --BGGGSCHHHHHHCCBTTS--------T--TCCCEEHHHHHHHHTTCSCEEEEEECCCTTSC-CCTTHHHHHHHHHHHT
T ss_pred --eeecCcHHHHhcCCCCCC--------C--CccCcCHHHHHHHHhccCcEEEEEeCCCcccC-cchHHHHHHHHHHHhc
Confidence 799999999999999865 2 489999999999995 588999999753211 1236889999999999
Q ss_pred CC---ceeccCCHHHHHHHHHhcCCCcccchhhhcCCCccCCCCCcchhHHHhhHHHHHhh-----cccccCCccccccC
Q 004721 249 VV---NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTF-----ASGILVPKDYIWPV 320 (733)
Q Consensus 249 ~~---~~i~SF~~~~l~~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~-----a~~i~~~~~~i~~~ 320 (733)
++ ++++||+++.|++++++.| ++++++ +.. .. .... ++..+..+ +..+++.+.
T Consensus 130 ~~~~~v~~~SF~~~~l~~~~~~~p--~~~~~l-~~~-~~------~~~~----~~~~~~~~~~~~~~~~~~~~~~----- 190 (250)
T 3ks6_A 130 SMLERTTFSSFLLASMDELWKATT--RPRLWL-VSP-SV------LQQL----GPGAVIETAIAHSIHEIGVHID----- 190 (250)
T ss_dssp TCGGGEEEEESCHHHHHHHHHHCC--SCEEEE-ECH-HH------HHHH----HHHHHHHHHHHTTCCEEEEEGG-----
T ss_pred CCCCCEEEEeCCHHHHHHHHHHCC--CCcEEE-Eec-cc------cccc----chhHHHHHHHhcCCCEEecchh-----
Confidence 76 4899999999999999998 667653 221 00 0000 11112122 222333322
Q ss_pred CCccCCCCChHHHHHHHHcCCeEEEeecCCCCCcccCCCCChHHHHHHHHhcCCcccceEEecCCCCccccchhcc
Q 004721 321 DESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPSAAVDCFA 396 (733)
Q Consensus 321 ~~~~~~~~~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~~~~~l~~~G~~~VDgIiTD~P~~~~~~l~~~~ 396 (733)
..++++|+.+|++|++|++||||++ ++|++++++| |||||||+|+.++++++.+.
T Consensus 191 ------~~~~~~v~~~~~~G~~V~~WTvn~~------------~~~~~l~~~G---VDgIiTD~P~~~~~~~~~~~ 245 (250)
T 3ks6_A 191 ------TADAGLMAQVQAAGLDFGCWAAHTP------------SQITKALDLG---VKVFTTDRPTLAIALRTEHR 245 (250)
T ss_dssp ------GCCHHHHHHHHHTTCEEEEECCCSH------------HHHHHHHHHT---CSEEEESCHHHHHHHHHHHH
T ss_pred ------hCCHHHHHHHHHCCCEEEEEeCCCH------------HHHHHHHHcC---CCEEEcCCHHHHHHHHHHhh
Confidence 2357899999999999999999874 8999999999 99999999999998887654
|
| >3no3_A Glycerophosphodiester phosphodiesterase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.89A {Parabacteroides distasonis} SCOP: c.1.18.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-45 Score=373.12 Aligned_cols=232 Identities=14% Similarity=0.129 Sum_probs=191.7
Q ss_pred CcceEEecCCC--CCCCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeeccccccccccCCCcCCCccccccccccc
Q 004721 406 ANLLVISKNGA--SGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAG 483 (733)
Q Consensus 406 ~~~~iIaHRG~--~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L~rtt~v~~~~~~~r~~~~~~~~~~ 483 (733)
++|.||||||+ ++.+||||++||++|++.|+|+||+|||+||||++||+||.+++| +
T Consensus 3 ~~~~iiaHRG~~~~~~~pENTl~Af~~A~~~G~d~iE~DV~lT~Dg~~Vv~HD~~l~~--~------------------- 61 (238)
T 3no3_A 3 DNTKVIAHRGYWKTEGSAQNSIRSLERASEIGAYGSEFDVHLTADNVLVVYHDNDIQG--K------------------- 61 (238)
T ss_dssp CCCEEEETTSSCSSTTCCTTSHHHHHHHHHTTCSEEEEEEEECTTSCEEECSSSEETT--E-------------------
T ss_pred CCCeEEeCCCCCCCCCCCccHHHHHHHHHHcCCCEEEEEeeEccCCcEEEECCCCCCC--C-------------------
Confidence 46899999999 689999999999999999999999999999999999999999986 3
Q ss_pred CcccccccCHHHHhccCccccCCCccccccCCcCCCCCccccCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCCcHHH
Q 004721 484 SGIFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTN 563 (733)
Q Consensus 484 ~g~~i~d~T~~EL~~L~~~~~~~~~~~~~~~~~~~~g~~~IptLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~ 563 (733)
.|.++||+||++|+++. +++||||+|+|+++++.++. .++||||.+.... ....+++
T Consensus 62 ---~v~~~t~~el~~l~~~~-----------------~~~iptL~evl~~~~~~~~~-~l~iEiK~~~~~~--~~~~~~~ 118 (238)
T 3no3_A 62 ---HIQSCTYDELKDLQLSN-----------------GEKLPTLEQYLKRAKKLKNI-RLIFELKSHDTPE--RNRDAAR 118 (238)
T ss_dssp ---EGGGSCHHHHTTCBCTT-----------------SCBCCBHHHHHHHHHHCTTC-EEEEEECCCSSHH--HHHHHHH
T ss_pred ---ChHhCCHHHHhhCCCCC-----------------CCcCCcHHHHHHHHhhcCCc-eEEEEeCCCCCcc--hhHHHHH
Confidence 78999999999998742 47999999999999986443 8999999764211 1125788
Q ss_pred HHHHHHHHcCCCCCCCceEEEEeCCHHHHHHHHhc-cCceEEEEeecccchhhhHHHHHHHHHHhHhcCCCcccccCCcc
Q 004721 564 SVMEALGNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNSA 642 (733)
Q Consensus 564 ~v~~~l~~~~~~~~~~~~vii~Sfd~~~L~~lk~~-p~~~~~~l~~~~~~~~~~~~l~~i~~~a~~i~~~~~~i~~~~~~ 642 (733)
.++++++++++. ++++++||++..|+.++++ |++++++++... .+ ..++. .+. ..+.+.. .
T Consensus 119 ~v~~~l~~~~~~----~~v~~~Sf~~~~l~~~~~~~p~~~~~~l~~~~----~~---~~~~~----~~~--~~~~~~~-~ 180 (238)
T 3no3_A 119 LSVQMVKRMKLA----KRTDYISFNMDACKEFIRLCPKSEVSYLNGEL----SP---MELKE----LGF--TGLDYHY-K 180 (238)
T ss_dssp HHHHHHHHTTCG----GGEEEEESCHHHHHHHHHHCTTSCEEECSSCS----CH---HHHHH----TTC--CEEEEEH-H
T ss_pred HHHHHHHHcCCc----CCEEEEECCHHHHHHHHHHCCCCeEEEEeCCC----CH---HHHHH----CCC--ceEeccH-H
Confidence 999999999998 8999999999999999999 999999987542 11 12222 121 1122211 1
Q ss_pred ccccchHHHHHHHHCCCcEEEEecCCcccccccccCCChHHHHHHHHhhcCcCEEEeCChHHHHHHHHhhc
Q 004721 643 FITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPMTAARYRSKLV 713 (733)
Q Consensus 643 ~l~~~~~~v~~~~~~Gl~v~~wTvn~~~~~~~~~~~~d~~~e~~~~l~~~GVdgIiTD~P~~~~~~l~~~~ 713 (733)
.+..++++|+.+|++|++|++||+|++. ++.+++ ++|||||+||+|+.+.+++++++
T Consensus 181 ~~~~~~~~v~~~~~~G~~v~~WTVn~~~-------------~~~~l~-~~GVdgIiTD~P~~~~~~l~~r~ 237 (238)
T 3no3_A 181 VLQSHPDWVKDCKVLGMTSNVWTVDDPK-------------LMEEMI-DMGVDFITTDLPEETQKILHSRA 237 (238)
T ss_dssp HHHHSTTHHHHHHHTTCEEEEECCCSHH-------------HHHHHH-HHTCSEEEESCHHHHHHHHHHHT
T ss_pred hhhCCHHHHHHHHHCCCEEEEECCCCHH-------------HHHHHH-HcCCCEEECCCHHHHHHHHHhcc
Confidence 1233678999999999999999999997 899997 99999999999999999998874
|
| >3ch0_A Glycerophosphodiester phosphodiesterase; YP_677622.1, glycerophosphoryl diester phosphodiesterase, ST genomics; HET: MSE CIT GOL; 1.50A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-45 Score=383.79 Aligned_cols=247 Identities=14% Similarity=0.142 Sum_probs=189.2
Q ss_pred CCCEEEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCCcc----ccCccccccccccccccC
Q 004721 90 DPPFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDN----ASNIAQIFKTQQKNYLVN 165 (733)
Q Consensus 90 ~~~~viaHRG~~~~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l~r----tt~~~~~~~~~~~~~~~~ 165 (733)
.++.||||||+++.+||||++||++|++.|+| +||+|||+||||++||+||.+|+| +|++.+..+
T Consensus 7 ~~~~iiaHRG~~~~~PENTl~Af~~A~~~Gad--~iE~DV~lTkDg~lVv~HD~~l~r~~~~tt~g~~~~~--------- 75 (272)
T 3ch0_A 7 ASFDIQGHRGCRGLLPENTIAAFTKALLLGVT--TLEFDLVISKDNRVVVSHDTFFHHEITMMVDGEDVTE--------- 75 (272)
T ss_dssp TTCEEEETTTTTTTSSTTSHHHHHHHHHHTCS--EEEEEEEECTTCCEEECSSSBCCTTTCCEETTEECCT---------
T ss_pred ccccEEecCCCCCCCCcccHHHHHHHHHcCCC--EEEEeeeEcCCCcEEEeCCCcccccccccCCCccccc---------
Confidence 35789999999999999999999999999999 999999999999999999999999 566543111
Q ss_pred CCCCCccccccCCHHhhccccccccccCCCCCCCCC---CcccccHHHHHHhhC----CCceEeeccCchhhhh----cC
Q 004721 166 GVPTPGWFSIDYTLNDLSNIILNQGVYSRTDKFDGN---GFQILTVQDMARQIK----PPGLWLNIQHDAFYAQ----HN 234 (733)
Q Consensus 166 g~~~~g~~v~d~T~~eL~~l~~~~~~~~~~~~~~g~---~~~iptL~e~l~~~~----~~~l~iEiK~~~~~~~----~~ 234 (733)
....++.|.++||+||++|+++.|+ ++.|.+. ..+||||+|+|++++ ++.++||||.+..... ..
T Consensus 76 -~~~~~~~v~d~t~~eL~~l~~~~~~---~~~~~~~~~~~~~iptL~evl~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~ 151 (272)
T 3ch0_A 76 -ANEKNFNLYAMNYADIKEIDVGMKT---HPRFKSQKKVPAVKPLFRELIETAEKLSAKIQYNGEIKSTVEGDNIDHPNI 151 (272)
T ss_dssp -TTGGGSBGGGSCHHHHTTSCCSSSC---CTTCTTSCCCCCCCCBHHHHHHHHHHHCSSCEEEEEECCCGGGBTTTBCCH
T ss_pred -ccccCceeecCCHHHHHhcCCCCcc---CccCcccccCCCCCcCHHHHHHHHHHhCCCceEEEEECCCcCcccccCccH
Confidence 1112458999999999999999876 3345441 238999999999985 5789999997653211 11
Q ss_pred CcHHHHHHHHHhhcCC---ceeccCCHHHHHHHHHhcCCCcccchhhhcCCCccCCCCCcchhHHHhhHHHHHhhccccc
Q 004721 235 LSMRSFVLSVSRSVVV---NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTFASGIL 311 (733)
Q Consensus 235 ~~~~~~v~~~l~~~~~---~~i~SF~~~~l~~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~i~ 311 (733)
..+++.++++++++++ ++++||+++.|++++++.| +.+++++ .... ..+.... +.+...+.+++
T Consensus 152 ~~~~~~v~~~l~~~~~~~~v~i~Sf~~~~l~~~~~~~p--~~~~~~l-~~~~-------~~~~~~~---~~~~~~~~~i~ 218 (272)
T 3ch0_A 152 ALFCDLVVAEIKKAHITDRFTLQSFDVRALEYMHSQYP--DIKLSYL-VETK-------GTLKKQL---EKLSFTPAVYS 218 (272)
T ss_dssp HHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCT--TSEEEEE-ECSS-------CCHHHHH---TTSSSCCSEEE
T ss_pred HHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHHHHHHCC--CCcEEEE-ecCC-------CCHHHHH---HHcCCCCcEEc
Confidence 2368899999999876 4899999999999999998 6788763 3211 0111110 00000113444
Q ss_pred CCccccccCCCccCCCCChHHHHHHHHcCCeEEEeecCCCCCcccCCCCChHHHHHHHHhcCCcccceEEecCCCCccc
Q 004721 312 VPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPSA 390 (733)
Q Consensus 312 ~~~~~i~~~~~~~~~~~~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~~~~~l~~~G~~~VDgIiTD~P~~~~~ 390 (733)
+++.. .++++|+.+|++|++|++||||++ ++|++++++| |||||||+|+++++
T Consensus 219 ~~~~~-----------~~~~~v~~~~~~Gl~v~~wTvn~~------------~~~~~l~~~G---vdgIiTD~P~~~~~ 271 (272)
T 3ch0_A 219 PDVTL-----------VSKKDIDAAHKLGMRVIPWTVNTK------------EEIETLISLG---VDGIITDYPDLFFE 271 (272)
T ss_dssp EBGGG-----------CCHHHHHHHHHTTCEECCBCCCSH------------HHHHHHHHHT---CSEEEESCGGGGTC
T ss_pred cchhh-----------cCHHHHHHHHHcCCEEEEeccCCH------------HHHHHHHHcC---CCEEEeCCHHHHhh
Confidence 43332 257899999999999999999864 8899999999 99999999998764
|
| >3ch0_A Glycerophosphodiester phosphodiesterase; YP_677622.1, glycerophosphoryl diester phosphodiesterase, ST genomics; HET: MSE CIT GOL; 1.50A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-45 Score=381.22 Aligned_cols=252 Identities=17% Similarity=0.188 Sum_probs=193.7
Q ss_pred CcceEEecCCCCCCCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeeccccccc----cccCCCcCCCccccccccc
Q 004721 406 ANLLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINS----TNAAQSKFNSITTTIPEIM 481 (733)
Q Consensus 406 ~~~~iIaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L~rt----t~v~~~~~~~r~~~~~~~~ 481 (733)
.++.||||||+++.+||||++||++|++.|||+||+|||+||||++||+||.+|+|+ |+... ..+.
T Consensus 7 ~~~~iiaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDg~lVv~HD~~l~r~~~~tt~g~~----------~~~~ 76 (272)
T 3ch0_A 7 ASFDIQGHRGCRGLLPENTIAAFTKALLLGVTTLEFDLVISKDNRVVVSHDTFFHHEITMMVDGED----------VTEA 76 (272)
T ss_dssp TTCEEEETTTTTTTSSTTSHHHHHHHHHHTCSEEEEEEEECTTCCEEECSSSBCCTTTCCEETTEE----------CCTT
T ss_pred ccccEEecCCCCCCCCcccHHHHHHHHHcCCCEEEEeeeEcCCCcEEEeCCCcccccccccCCCcc----------cccc
Confidence 357899999999999999999999999999999999999999999999999999994 33100 0001
Q ss_pred ccCcccccccCHHHHhccCccccCCCccccccCCcCCCC----CccccCHHHHHHHHHhcCCCceEEEEecchhHHHh--
Q 004721 482 AGSGIFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKN----AGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAE-- 555 (733)
Q Consensus 482 ~~~g~~i~d~T~~EL~~L~~~~~~~~~~~~~~~~~~~~g----~~~IptLeEvL~~~~~~~~~~~l~iEiK~~~~~~~-- 555 (733)
.+.++.|.++||+||++|+++.|.. +.|.+ .++||||+|+|+++++++..+.++||||.+.....
T Consensus 77 ~~~~~~v~d~t~~eL~~l~~~~~~~---------~~~~~~~~~~~~iptL~evl~~~~~~~~~~~l~iEiK~~~~~~~~~ 147 (272)
T 3ch0_A 77 NEKNFNLYAMNYADIKEIDVGMKTH---------PRFKSQKKVPAVKPLFRELIETAEKLSAKIQYNGEIKSTVEGDNID 147 (272)
T ss_dssp TGGGSBGGGSCHHHHTTSCCSSSCC---------TTCTTSCCCCCCCCBHHHHHHHHHHHCSSCEEEEEECCCGGGBTTT
T ss_pred cccCceeecCCHHHHHhcCCCCccC---------ccCcccccCCCCCcCHHHHHHHHHHhCCCceEEEEECCCcCccccc
Confidence 1233489999999999999986532 12221 24899999999999874211489999997653100
Q ss_pred -hcCCcHHHHHHHHHHHcCCCCCCCceEEEEeCCHHHHHHHHhc-cCceEEEEeecccchhhhHHHHHHHHHHhHhcCCC
Q 004721 556 -KQGMSVTNSVMEALGNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDALNQTIEDIKKFADSVVLSK 633 (733)
Q Consensus 556 -~~~~~~~~~v~~~l~~~~~~~~~~~~vii~Sfd~~~L~~lk~~-p~~~~~~l~~~~~~~~~~~~l~~i~~~a~~i~~~~ 633 (733)
.....++++++++++++++. ++|+|+||++..|++++++ |++++++++.... + + ..++..++...
T Consensus 148 ~~~~~~~~~~v~~~l~~~~~~----~~v~i~Sf~~~~l~~~~~~~p~~~~~~l~~~~~-~-----~---~~~~~~~~~~~ 214 (272)
T 3ch0_A 148 HPNIALFCDLVVAEIKKAHIT----DRFTLQSFDVRALEYMHSQYPDIKLSYLVETKG-T-----L---KKQLEKLSFTP 214 (272)
T ss_dssp BCCHHHHHHHHHHHHHHTTCG----GGEEEEESCHHHHHHHHHHCTTSEEEEEECSSC-C-----H---HHHHTTSSSCC
T ss_pred CccHHHHHHHHHHHHHHcCCC----CcEEEEeCCHHHHHHHHHHCCCCcEEEEecCCC-C-----H---HHHHHHcCCCC
Confidence 00014788999999999988 8999999999999999999 9999999986421 1 1 12333333211
Q ss_pred cccccCCccccccchHHHHHHHHCCCcEEEEecCCcccccccccCCChHHHHHHHHhhcCcCEEEeCChHHHH
Q 004721 634 ESVYPLNSAFITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPMTAA 706 (733)
Q Consensus 634 ~~i~~~~~~~l~~~~~~v~~~~~~Gl~v~~wTvn~~~~~~~~~~~~d~~~e~~~~l~~~GVdgIiTD~P~~~~ 706 (733)
..+.+. +...++++|+.+|++|++|++||+|++. ++.+++ ++||||||||+|+.++
T Consensus 215 ~~i~~~---~~~~~~~~v~~~~~~Gl~v~~wTvn~~~-------------~~~~l~-~~GvdgIiTD~P~~~~ 270 (272)
T 3ch0_A 215 AVYSPD---VTLVSKKDIDAAHKLGMRVIPWTVNTKE-------------EIETLI-SLGVDGIITDYPDLFF 270 (272)
T ss_dssp SEEEEB---GGGCCHHHHHHHHHTTCEECCBCCCSHH-------------HHHHHH-HHTCSEEEESCGGGGT
T ss_pred cEEccc---hhhcCHHHHHHHHHcCCEEEEeccCCHH-------------HHHHHH-HcCCCEEEeCCHHHHh
Confidence 334332 2234689999999999999999999987 888886 9999999999999864
|
| >3mz2_A Glycerophosphoryl diester phosphodiesterase; structural genomics, joint center for structural genomics; HET: MSE PE4; 1.55A {Parabacteroides distasonis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-44 Score=379.05 Aligned_cols=252 Identities=15% Similarity=0.192 Sum_probs=200.0
Q ss_pred cCCcceEEecCCCCC-CCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeeccccccccccCCCcCCCcccccccccc
Q 004721 404 KSANLLVISKNGASG-DYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMA 482 (733)
Q Consensus 404 ~~~~~~iIaHRG~~~-~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L~rtt~v~~~~~~~r~~~~~~~~~ 482 (733)
.+.+|+||||||+++ .+||||++||+.|++.|+|+||+|||+||||++||+||.+|+|+||
T Consensus 28 ~~~~~~iiaHRG~~~~~~pENTl~af~~A~~~g~d~iE~Dv~~TkDg~~Vv~HD~~l~rtt~------------------ 89 (292)
T 3mz2_A 28 DDRIPLISGHRGGRGKGYPENSMETFENTLSYTPATFEIDPRLTKDSVIVLFHDDTLERTSN------------------ 89 (292)
T ss_dssp TTCCCEEEEGGGCCBTTBCTTCHHHHHHHHHHCCCEEEECEEECTTCCEEECCSSSSTTTBS------------------
T ss_pred CCCCCEEEECCCCCCCCCCccHHHHHHHHHHcCCCEEEEEEeECCCCcEEEECCchhcccCC------------------
Confidence 345789999999985 7999999999999999999999999999999999999999999999
Q ss_pred cCcccccccCHHHHhccCccccCCCccccccCCcCCCCCccccCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCCcHH
Q 004721 483 GSGIFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVT 562 (733)
Q Consensus 483 ~~g~~i~d~T~~EL~~L~~~~~~~~~~~~~~~~~~~~g~~~IptLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~ 562 (733)
++| .|.++||+||++|+++.+.+ .+. +++||||+|+|+++++. +.++||+|... .
T Consensus 90 ~~g-~v~~~t~~el~~l~~~~~~~----------~~~-~~~iptL~evl~~~~~~---~~l~iE~K~~~----------~ 144 (292)
T 3mz2_A 90 GTG-KVSDYTWEELQNFRLKDPEG----------NIT-NYRIPTLEEAIRWARGK---TILILDKKDVP----------M 144 (292)
T ss_dssp CCS-CGGGSCHHHHTTSCBBCTTC----------CBC-SCCCCBHHHHHHHHTTT---CCEEECCSSSC----------H
T ss_pred CCC-chhhCcHHHHhcCCCCCCCC----------ccC-CcCCCCHHHHHHHhCCC---cEEEEEECCCc----------H
Confidence 677 89999999999999875421 234 48999999999999875 47999999752 2
Q ss_pred HHHHHHHHHcCCCCCCCceEEEEeCCHHHHHHHHhc-cCceEEEEeecccchhhhHHHHHHHHHHhHhcCCC----cccc
Q 004721 563 NSVMEALGNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDALNQTIEDIKKFADSVVLSK----ESVY 637 (733)
Q Consensus 563 ~~v~~~l~~~~~~~~~~~~vii~Sfd~~~L~~lk~~-p~~~~~~l~~~~~~~~~~~~l~~i~~~a~~i~~~~----~~i~ 637 (733)
+.++++|+++++. ++|+++||++..|+.+++. |++++++++... ..++.+.. .+.+. ..+.
T Consensus 145 ~~v~~~l~~~~~~----~~vii~Sf~~~~l~~~~~~~p~~~~~~l~~~~------~~l~~~~~----~g~~~~~~~~~~~ 210 (292)
T 3mz2_A 145 ERTAQLITDMQAE----PYVMITVHDGASARFFYEKNPNFMFEAFVKTK------EAVQDYED----NGIPWSHIMAYVG 210 (292)
T ss_dssp HHHHHHHHHTTCT----TTEEEEESSHHHHHHHHHHCTTCCEEEECCSH------HHHHHHHH----TTCCGGGEEEEEE
T ss_pred HHHHHHHHHcCCC----CCEEEEECCHHHHHHHHHHCCCCeEEEEeCCH------HHHHHHHH----hCCChhheeeeec
Confidence 5789999999998 8999999999999999999 999999987531 11222221 11111 1122
Q ss_pred cCCccccccchHHHHHHHHCCCcEEEEecCCcccccccccCCChHHHHHHHHhhcCcCEEEeCChHHHHHHHHhhccccc
Q 004721 638 PLNSAFITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPMTAARYRSKLVRKQT 717 (733)
Q Consensus 638 ~~~~~~l~~~~~~v~~~~~~Gl~v~~wTvn~~~~~~~~~~~~d~~~e~~~~l~~~GVdgIiTD~P~~~~~~l~~~~~~~~ 717 (733)
+ .+...++++|+.+|++|++|++||+|+.+.. .-..|+.++|.+++ ++|||||+||+|+.+.+++++...+.+
T Consensus 211 ~---~~~~~~~~~V~~ah~~G~~V~vWTv~t~d~~---~~~~~~~~~~~~L~-~~GVDgIiTD~P~~l~~~L~~~~~~~~ 283 (292)
T 3mz2_A 211 P---KITPEVREVIDMLHERGVMCMISTAPSDDKL---STPESRAEAYRMII-RQGVDIIESDRPIEVAEAISSLIPVSS 283 (292)
T ss_dssp S---SCCHHHHHHHHHHHHTTBCEEEECTTTGGGS---SSHHHHHHHHHHHH-HTTCCEEEESCHHHHHHHHGGGSCSSC
T ss_pred c---cccccCHHHHHHHHHCCCEEEEEeCCCcchh---hhccccHHHHHHHH-HcCCCEEEeCCHHHHHHHHHHhccCcc
Confidence 2 2233468999999999999999999986410 00012234788887 999999999999999999998765544
Q ss_pred cc
Q 004721 718 SL 719 (733)
Q Consensus 718 ~~ 719 (733)
..
T Consensus 284 ~~ 285 (292)
T 3mz2_A 284 SK 285 (292)
T ss_dssp TT
T ss_pred hh
Confidence 33
|
| >1zcc_A Glycerophosphodiester phosphodiesterase; NYSGXRC, agrobacterium tumefaciens STR. C58, structural genomics; 2.50A {Agrobacterium tumefaciens str} SCOP: c.1.18.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-46 Score=384.80 Aligned_cols=235 Identities=16% Similarity=0.074 Sum_probs=196.1
Q ss_pred ceEEecCCCCCCCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeeccccccccccCCCcCCCcccccccccccCccc
Q 004721 408 LLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIF 487 (733)
Q Consensus 408 ~~iIaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L~rtt~v~~~~~~~r~~~~~~~~~~~g~~ 487 (733)
|.||||||+++.+||||++||++|++.|||+||+|||+||||++||+||.+|+|+|| ++| .
T Consensus 2 ~~iiaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDg~lVv~HD~~l~Rtt~------------------~~g-~ 62 (248)
T 1zcc_A 2 TKIVSHRGANRFAPENTFAAADLALQQGADYIELDVRESADGVLYVIHDETLDRTTN------------------GTG-P 62 (248)
T ss_dssp CEEEETTTTTTTSCSSSHHHHHHHHHTTCSEEEEEEEECTTCCEEECSSSBTTTTSS------------------CCS-B
T ss_pred CeEEECCCCCCCCCchHHHHHHHHHHcCCCEEEEEeeEcCCCCEEEECCCccccccC------------------CCc-c
Confidence 679999999999999999999999999999999999999999999999999999999 777 7
Q ss_pred ccccCHHHHhccCccccCCCccccccCCcCCCCCccccCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCCcHHHHHHH
Q 004721 488 SFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVME 567 (733)
Q Consensus 488 i~d~T~~EL~~L~~~~~~~~~~~~~~~~~~~~g~~~IptLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~v~~ 567 (733)
|.++||+||++|+++.+ ++||||+|+|+++++. + +.++||||.+.... ..+++.+++
T Consensus 63 v~~~t~~eL~~l~~g~~-----------------~~iptL~evl~~~~~~-~-~~l~iEiK~~~~~~----~~~~~~v~~ 119 (248)
T 1zcc_A 63 VGHMLSSEIDTLDAGGW-----------------FDDRFKGAIVPRLDAY-L-EHLRGRAGVYIELK----YCDPAKVAA 119 (248)
T ss_dssp STTSCHHHHTTSCSSTT-----------------TCGGGTTCCCCBHHHH-H-HHHTTTCEEEEEEE----ESCHHHHHH
T ss_pred hhhCCHHHHHhCCCCCC-----------------CCCCCHHHHHHHHHhc-C-cEEEEEeCCCCCcc----cHHHHHHHH
Confidence 99999999999998632 5899999999999873 2 37999999764200 126788999
Q ss_pred HHHHcCCCCCCCceEEEEeCCHHHHHHHHhc-cCceEEEEeecccchhhhHHHHHHHHHHhHhcCCCcccccCCcccccc
Q 004721 568 ALGNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNSAFITS 646 (733)
Q Consensus 568 ~l~~~~~~~~~~~~vii~Sfd~~~L~~lk~~-p~~~~~~l~~~~~~~~~~~~l~~i~~~a~~i~~~~~~i~~~~~~~l~~ 646 (733)
+++++++. ++|+|+||++..|+.++++ |++++++++..... .. .++...++ ..+.+. +...
T Consensus 120 ~l~~~~~~----~~v~i~Sf~~~~l~~~~~~~p~~~~~~l~~~~~~-----~~----~~~~~~~~--~~i~~~---~~~~ 181 (248)
T 1zcc_A 120 LVRHLGMV----RDTFYFSFSEEMRQGLQSIAPEFRRMMTLDIAKS-----PS----LVGAVHHA--SIIEIT---PAQM 181 (248)
T ss_dssp HHHHHTCS----TTEEEECSCHHHHHHHHHHCTTSEEEEEHHHHSS-----TH----HHHHTTCC--SEEEEC---HHHH
T ss_pred HHHHhCCC----CCEEEEECCHHHHHHHHHHCCCCcEEEEecCCcc-----HH----HHHHHcCC--CEEEec---HHHh
Confidence 99999988 8999999999999999999 99999998754211 11 22222332 223332 2233
Q ss_pred -chHHHHHHHHCCCcEEEEecCCcccccccccCCChHHHHHH-HHhhcCcCEEEeCChHHHHHHHHhhcccc
Q 004721 647 -ATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINT-YYEGAGIDGVITEFPMTAARYRSKLVRKQ 716 (733)
Q Consensus 647 -~~~~v~~~~~~Gl~v~~wTvn~~~~~~~~~~~~d~~~e~~~-~l~~~GVdgIiTD~P~~~~~~l~~~~~~~ 716 (733)
++++++.+|++|++|++||+|++. ++.+ ++ ++|||||+||+|+.+.++++..+.+.
T Consensus 182 ~~~~~v~~~~~~G~~v~~wTvn~~~-------------~~~~~l~-~~GvdgIiTD~p~~~~~~~~~~~~~~ 239 (248)
T 1zcc_A 182 RRPGIIEASRKAGLEIMVYYGGDDM-------------AVHREIA-TSDVDYINLDRPDLFAAVRSGMAELL 239 (248)
T ss_dssp HSHHHHHHHHHHTCEEEEECCCCCH-------------HHHHHHH-HSSCSEEEESCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHCCCEEEEECCCCHH-------------HHHHHHH-HcCCCEEEECCHHHHHHHHHHhcchh
Confidence 689999999999999999999997 8998 75 99999999999999999998776553
|
| >2o55_A Putative glycerophosphodiester phosphodiesterase; beta barrel, structural genomics, protein structure initiati 2; 2.81A {Galdieria sulphuraria} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-44 Score=377.01 Aligned_cols=239 Identities=15% Similarity=0.142 Sum_probs=189.6
Q ss_pred CCCCEEEEeCCCC--CCCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCC---CCccccCccccccccccccc
Q 004721 89 GDPPFVVARGGFS--GIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDL---KLDNASNIAQIFKTQQKNYL 163 (733)
Q Consensus 89 ~~~~~viaHRG~~--~~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~---~l~rtt~~~~~~~~~~~~~~ 163 (733)
..+|+||||||++ +.+||||++||+.|++.|+| +||+|||+||||++||+||. +|+||||+.+
T Consensus 4 ~~~~~iiaHRG~~~~~~~PENTl~Af~~A~~~Gad--~iE~DV~lTkDg~lVv~HD~~~~~l~Rtt~~~g---------- 71 (258)
T 2o55_A 4 VIIPKIVGHRGVGKEGLAPENTLRSFVLCMERNIP--YIETDLRVCKTGEIVLFHGTPEGTIPFYKDGTS---------- 71 (258)
T ss_dssp CCCCEEEEETTTTTSTTSCTTCHHHHHHHHHTTCC--EEEEEEEECTTSCEEECCCSTTSBCTTSTTTTC----------
T ss_pred ccCceEEECCCCCCCCCCCccHHHHHHHHHHcCcC--EEEEEEEEecCCeEEEEeCCCCccceeeCCCCe----------
Confidence 3568999999999 99999999999999999999 99999999999999999999 9999999875
Q ss_pred cCCCCCCccccccCCHHhhccccccccccCCCCCCCCCCcccccHHHHHHhhC----CCceEeeccCchhhhhcCCcHHH
Q 004721 164 VNGVPTPGWFSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIK----PPGLWLNIQHDAFYAQHNLSMRS 239 (733)
Q Consensus 164 ~~g~~~~g~~v~d~T~~eL~~l~~~~~~~~~~~~~~g~~~~iptL~e~l~~~~----~~~l~iEiK~~~~~~~~~~~~~~ 239 (733)
.|.++||+||++|+++. +++||||+|+|++++ ++.++||+|.+.... ....+++
T Consensus 72 ---------~v~~~t~~eL~~l~~~~------------~~~iptL~evl~~~~~~~~~~~l~iEiK~~~~~~-~~~~~~~ 129 (258)
T 2o55_A 72 ---------RIGDLSLEELKRLDVGG------------GHTIPSLEELFVAIEEQKFNLKLNLELKGEEWKR-KESGDHQ 129 (258)
T ss_dssp ---------BGGGSCHHHHTTCBSSS------------SCBCCBHHHHHHHHHHSCSCCEEEEEECCSSSSS-TTSSHHH
T ss_pred ---------ehhhCcHHHHhhcCCCC------------CCccCCHHHHHHHhhhhcCceEEEEEEccCCccc-cchHHHH
Confidence 79999999999999862 479999999999986 578999999654210 1135889
Q ss_pred HHHHHHhhcCC---ceeccCCHHHHHHHHHhcCCCcccchhhhcCCCccCCCCCcchhHHHhhHHHHH-hhcccccCCcc
Q 004721 240 FVLSVSRSVVV---NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIK-TFASGILVPKD 315 (733)
Q Consensus 240 ~v~~~l~~~~~---~~i~SF~~~~l~~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~-~~a~~i~~~~~ 315 (733)
.++++++++++ ++|+||++..|++++++.| +.+++++........ +..+. .... ..+.++++.+.
T Consensus 130 ~v~~~l~~~~~~~~v~i~Sf~~~~l~~~~~~~p--~~~~~~l~~~~~~~~---~~~~~------~~~~~~~~~~v~~~~~ 198 (258)
T 2o55_A 130 RLLLLVEKYHMQERVDYCSFHHEALAHLKALCP--DVKITYLFNYMGQPT---PLDFV------EQACYGDANGVSMLFH 198 (258)
T ss_dssp HHHHHHHTTTCGGGEEEEESSHHHHHHHHHHCT--TCEEEEECCTTSCCC---CTTHH------HHHHHTTCSEEEEEGG
T ss_pred HHHHHHHHcCCCCCEEEEeCCHHHHHHHHHHCC--CCcEEEEEeCCCCCC---HHHHH------HHHHhcCCeEEecChh
Confidence 99999999876 4899999999999999998 678776331211111 11110 1111 13455555443
Q ss_pred ccccCCCccCCCCChHHHHHHHHcCCeEEEeecCCCCCcccCCCCChHHHHHHHHhcCCcccceEEecCCCCccccchh
Q 004721 316 YIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPSAAVDC 394 (733)
Q Consensus 316 ~i~~~~~~~~~~~~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~~~~~l~~~G~~~VDgIiTD~P~~~~~~l~~ 394 (733)
.+ ++++|+.+|++|++|++|||.+. .|+.++|++++++| |||||||+|+.++++++.
T Consensus 199 ~~-----------~~~~v~~~~~~G~~v~~wTv~~~--------~n~~~~~~~l~~~G---vdgI~TD~p~~~~~~l~~ 255 (258)
T 2o55_A 199 YL-----------TKEQVCTAHEKGLSVTVWMPWIF--------DDSEEDWKKCLELQ---VDLICSNYPFGLMNFLSN 255 (258)
T ss_dssp GC-----------CHHHHHHHHHTTCEEEEECCTTC--------CCCHHHHHHHHHHT---CSEEEESCHHHHHHHHTC
T ss_pred hc-----------CHHHHHHHHHCCCEEEEeeCCCC--------CCCHHHHHHHHHcC---CCEEEeCCHHHHHHHHHH
Confidence 32 47899999999999999999210 02348999999999 999999999998877653
|
| >3mz2_A Glycerophosphoryl diester phosphodiesterase; structural genomics, joint center for structural genomics; HET: MSE PE4; 1.55A {Parabacteroides distasonis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-44 Score=378.53 Aligned_cols=246 Identities=18% Similarity=0.176 Sum_probs=193.0
Q ss_pred ccccCCCCCEEEEeCCCCC-CCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCCccccCcccccccccccc
Q 004721 84 WQTLTGDPPFVVARGGFSG-IFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNY 162 (733)
Q Consensus 84 ~~~~~~~~~~viaHRG~~~-~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l~rtt~~~~~~~~~~~~~ 162 (733)
|.....++|+||||||+++ .+||||++||+.|++.|+| +||+|||+||||++||+||.+|+|||++.+
T Consensus 24 ~~~~~~~~~~iiaHRG~~~~~~pENTl~af~~A~~~g~d--~iE~Dv~~TkDg~~Vv~HD~~l~rtt~~~g--------- 92 (292)
T 3mz2_A 24 YQYADDRIPLISGHRGGRGKGYPENSMETFENTLSYTPA--TFEIDPRLTKDSVIVLFHDDTLERTSNGTG--------- 92 (292)
T ss_dssp TBCCTTCCCEEEEGGGCCBTTBCTTCHHHHHHHHHHCCC--EEEECEEECTTCCEEECCSSSSTTTBSCCS---------
T ss_pred HhCCCCCCCEEEECCCCCCCCCCccHHHHHHHHHHcCCC--EEEEEEeECCCCcEEEECCchhcccCCCCC---------
Confidence 4445667899999999985 7999999999999999999 999999999999999999999999999876
Q ss_pred ccCCCCCCccccccCCHHhhccccccccccCCCCCCCCCCcccccHHHHHHhhCC-CceEeeccCchhhhhcCCcHHHHH
Q 004721 163 LVNGVPTPGWFSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKP-PGLWLNIQHDAFYAQHNLSMRSFV 241 (733)
Q Consensus 163 ~~~g~~~~g~~v~d~T~~eL~~l~~~~~~~~~~~~~~g~~~~iptL~e~l~~~~~-~~l~iEiK~~~~~~~~~~~~~~~v 241 (733)
.|.++||+||++|+++.+. ..|.+ ++||||+|+|++++. ..++||+|... .+.+
T Consensus 93 ----------~v~~~t~~el~~l~~~~~~----~~~~~--~~iptL~evl~~~~~~~~l~iE~K~~~---------~~~v 147 (292)
T 3mz2_A 93 ----------KVSDYTWEELQNFRLKDPE----GNITN--YRIPTLEEAIRWARGKTILILDKKDVP---------MERT 147 (292)
T ss_dssp ----------CGGGSCHHHHTTSCBBCTT----CCBCS--CCCCBHHHHHHHHTTTCCEEECCSSSC---------HHHH
T ss_pred ----------chhhCcHHHHhcCCCCCCC----CccCC--cCCCCHHHHHHHhCCCcEEEEEECCCc---------HHHH
Confidence 7999999999999998653 23444 799999999999874 78999999642 3578
Q ss_pred HHHHhhcCC---ceeccCCHHHHHHHHHhcCCCcccchhhhcCCCccCCCCCcchhHHHhhHHHHHhh-------ccccc
Q 004721 242 LSVSRSVVV---NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTF-------ASGIL 311 (733)
Q Consensus 242 ~~~l~~~~~---~~i~SF~~~~l~~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~-------a~~i~ 311 (733)
+++++++++ ++++||+++.+++++++.| ++++++ +.. . .. .+..+... +..++
T Consensus 148 ~~~l~~~~~~~~vii~Sf~~~~l~~~~~~~p--~~~~~~-l~~-~------~~-------~l~~~~~~g~~~~~~~~~~~ 210 (292)
T 3mz2_A 148 AQLITDMQAEPYVMITVHDGASARFFYEKNP--NFMFEA-FVK-T------KE-------AVQDYEDNGIPWSHIMAYVG 210 (292)
T ss_dssp HHHHHHTTCTTTEEEEESSHHHHHHHHHHCT--TCCEEE-ECC-S------HH-------HHHHHHHTTCCGGGEEEEEE
T ss_pred HHHHHHcCCCCCEEEEECCHHHHHHHHHHCC--CCeEEE-EeC-C------HH-------HHHHHHHhCCChhheeeeec
Confidence 899999876 5999999999999999998 677775 221 1 01 11121111 11122
Q ss_pred CCccccccCCCccCCCCChHHHHHHHHcCCeEEEeecCCCCCcccCCCCChHHHHHHHHhcCCcccceEEecCCCCcccc
Q 004721 312 VPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPSAA 391 (733)
Q Consensus 312 ~~~~~i~~~~~~~~~~~~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~~~~~l~~~G~~~VDgIiTD~P~~~~~~ 391 (733)
+.+.. .++++|+.+|++|++|++||||+..... ...|+.++|++++++| |||||||+|+.++++
T Consensus 211 ~~~~~-----------~~~~~V~~ah~~G~~V~vWTv~t~d~~~--~~~~~~~~~~~L~~~G---VDgIiTD~P~~l~~~ 274 (292)
T 3mz2_A 211 PKITP-----------EVREVIDMLHERGVMCMISTAPSDDKLS--TPESRAEAYRMIIRQG---VDIIESDRPIEVAEA 274 (292)
T ss_dssp SSCCH-----------HHHHHHHHHHHTTBCEEEECTTTGGGSS--SHHHHHHHHHHHHHTT---CCEEEESCHHHHHHH
T ss_pred ccccc-----------cCHHHHHHHHHCCCEEEEEeCCCcchhh--hccccHHHHHHHHHcC---CCEEEeCCHHHHHHH
Confidence 22211 2478999999999999999998741000 0012346899999999 999999999999999
Q ss_pred chhcccc
Q 004721 392 VDCFAHL 398 (733)
Q Consensus 392 l~~~~~~ 398 (733)
++.++..
T Consensus 275 L~~~~~~ 281 (292)
T 3mz2_A 275 ISSLIPV 281 (292)
T ss_dssp HGGGSCS
T ss_pred HHHhccC
Confidence 9887643
|
| >1zcc_A Glycerophosphodiester phosphodiesterase; NYSGXRC, agrobacterium tumefaciens STR. C58, structural genomics; 2.50A {Agrobacterium tumefaciens str} SCOP: c.1.18.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-46 Score=382.30 Aligned_cols=229 Identities=14% Similarity=0.040 Sum_probs=188.3
Q ss_pred CEEEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCCccccCccccccccccccccCCCCCCc
Q 004721 92 PFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPG 171 (733)
Q Consensus 92 ~~viaHRG~~~~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l~rtt~~~~~~~~~~~~~~~~g~~~~g 171 (733)
|+||||||+++.+||||++||+.|++.|+| +||+|||+||||++||+||.+|+||||+.+
T Consensus 2 ~~iiaHRG~~~~~PENTl~Af~~A~~~Gad--~iE~DV~lTkDg~lVv~HD~~l~Rtt~~~g------------------ 61 (248)
T 1zcc_A 2 TKIVSHRGANRFAPENTFAAADLALQQGAD--YIELDVRESADGVLYVIHDETLDRTTNGTG------------------ 61 (248)
T ss_dssp CEEEETTTTTTTSCSSSHHHHHHHHHTTCS--EEEEEEEECTTCCEEECSSSBTTTTSSCCS------------------
T ss_pred CeEEECCCCCCCCCchHHHHHHHHHHcCCC--EEEEEeeEcCCCCEEEECCCccccccCCCc------------------
Confidence 679999999999999999999999999999 999999999999999999999999999876
Q ss_pred cccccCCHHhhccccccccccCCCCCCCCCCcccccHHHHHHhhCC--CceEeeccCchhhhhcCCcHHHHHHHHHhhcC
Q 004721 172 WFSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKP--PGLWLNIQHDAFYAQHNLSMRSFVLSVSRSVV 249 (733)
Q Consensus 172 ~~v~d~T~~eL~~l~~~~~~~~~~~~~~g~~~~iptL~e~l~~~~~--~~l~iEiK~~~~~~~~~~~~~~~v~~~l~~~~ 249 (733)
.|.++||+||++|+++.+ ++||||+|+|++++. ..++||||.+... .. .+++.+++++++++
T Consensus 62 -~v~~~t~~eL~~l~~g~~------------~~iptL~evl~~~~~~~~~l~iEiK~~~~~-~~--~~~~~v~~~l~~~~ 125 (248)
T 1zcc_A 62 -PVGHMLSSEIDTLDAGGW------------FDDRFKGAIVPRLDAYLEHLRGRAGVYIEL-KY--CDPAKVAALVRHLG 125 (248)
T ss_dssp -BSTTSCHHHHTTSCSSTT------------TCGGGTTCCCCBHHHHHHHHTTTCEEEEEE-EE--SCHHHHHHHHHHHT
T ss_pred -chhhCCHHHHHhCCCCCC------------CCCCCHHHHHHHHHhcCcEEEEEeCCCCCc-cc--HHHHHHHHHHHHhC
Confidence 799999999999998764 599999999999864 6799999965321 11 26788999999987
Q ss_pred C---ceeccCCHHHHHHHHHhcCCCcccchhhhcCCCccCCCCCcchhHHHhhHHHHH-hhcccccCCccccccCCCccC
Q 004721 250 V---NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIK-TFASGILVPKDYIWPVDESLY 325 (733)
Q Consensus 250 ~---~~i~SF~~~~l~~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~-~~a~~i~~~~~~i~~~~~~~~ 325 (733)
+ ++|+||++..+++++++.| +.+++++..... . . ....+ ..+.++++++..+
T Consensus 126 ~~~~v~i~Sf~~~~l~~~~~~~p--~~~~~~l~~~~~-------~-~------~~~~~~~~~~~i~~~~~~~-------- 181 (248)
T 1zcc_A 126 MVRDTFYFSFSEEMRQGLQSIAP--EFRRMMTLDIAK-------S-P------SLVGAVHHASIIEITPAQM-------- 181 (248)
T ss_dssp CSTTEEEECSCHHHHHHHHHHCT--TSEEEEEHHHHS-------S-T------HHHHHTTCCSEEEECHHHH--------
T ss_pred CCCCEEEEECCHHHHHHHHHHCC--CCcEEEEecCCc-------c-H------HHHHHHcCCCEEEecHHHh--------
Confidence 6 4899999999999999998 677776332110 0 0 01111 1245555554433
Q ss_pred CCCChHHHHHHHHcCCeEEEeecCCCCCcccCCCCChHHHHHH-HHhcCCcccceEEecCCCCccccchhccc
Q 004721 326 LLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLS-FIDNGDFSVDGVLSDFPLTPSAAVDCFAH 397 (733)
Q Consensus 326 ~~~~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~~~~~-l~~~G~~~VDgIiTD~P~~~~~~l~~~~~ 397 (733)
.++++|+.+|++|++|++||||++ +++++ ++++| |||||||+|+.++++++....
T Consensus 182 --~~~~~v~~~~~~G~~v~~wTvn~~------------~~~~~~l~~~G---vdgIiTD~p~~~~~~~~~~~~ 237 (248)
T 1zcc_A 182 --RRPGIIEASRKAGLEIMVYYGGDD------------MAVHREIATSD---VDYINLDRPDLFAAVRSGMAE 237 (248)
T ss_dssp --HSHHHHHHHHHHTCEEEEECCCCC------------HHHHHHHHHSS---CSEEEESCHHHHHHHHHHHHH
T ss_pred --CCHHHHHHHHHCCCEEEEECCCCH------------HHHHHHHHHcC---CCEEEECCHHHHHHHHHHhcc
Confidence 036799999999999999999976 78999 99999 999999999999888876543
|
| >3no3_A Glycerophosphodiester phosphodiesterase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.89A {Parabacteroides distasonis} SCOP: c.1.18.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-44 Score=369.12 Aligned_cols=224 Identities=15% Similarity=0.150 Sum_probs=181.0
Q ss_pred CCCEEEEeCCC--CCCCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCCccccCccccccccccccccCCC
Q 004721 90 DPPFVVARGGF--SGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGV 167 (733)
Q Consensus 90 ~~~~viaHRG~--~~~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l~rtt~~~~~~~~~~~~~~~~g~ 167 (733)
.+|.||||||+ ++.+||||++||+.|++.|+| +||+|||+||||++||+||++|+| +
T Consensus 3 ~~~~iiaHRG~~~~~~~pENTl~Af~~A~~~G~d--~iE~DV~lT~Dg~~Vv~HD~~l~~-----~-------------- 61 (238)
T 3no3_A 3 DNTKVIAHRGYWKTEGSAQNSIRSLERASEIGAY--GSEFDVHLTADNVLVVYHDNDIQG-----K-------------- 61 (238)
T ss_dssp CCCEEEETTSSCSSTTCCTTSHHHHHHHHHTTCS--EEEEEEEECTTSCEEECSSSEETT-----E--------------
T ss_pred CCCeEEeCCCCCCCCCCCccHHHHHHHHHHcCCC--EEEEEeeEccCCcEEEECCCCCCC-----C--------------
Confidence 46899999999 589999999999999999999 999999999999999999999986 2
Q ss_pred CCCccccccCCHHhhccccccccccCCCCCCCCCCcccccHHHHHHhhC---CCceEeeccCchhhhhcCCcHHHHHHHH
Q 004721 168 PTPGWFSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIK---PPGLWLNIQHDAFYAQHNLSMRSFVLSV 244 (733)
Q Consensus 168 ~~~g~~v~d~T~~eL~~l~~~~~~~~~~~~~~g~~~~iptL~e~l~~~~---~~~l~iEiK~~~~~~~~~~~~~~~v~~~ 244 (733)
.|.++||+||++|+++. +++||||+|+|++++ +..++||||.+.... ....+++.++++
T Consensus 62 -----~v~~~t~~el~~l~~~~------------~~~iptL~evl~~~~~~~~~~l~iEiK~~~~~~-~~~~~~~~v~~~ 123 (238)
T 3no3_A 62 -----HIQSCTYDELKDLQLSN------------GEKLPTLEQYLKRAKKLKNIRLIFELKSHDTPE-RNRDAARLSVQM 123 (238)
T ss_dssp -----EGGGSCHHHHTTCBCTT------------SCBCCBHHHHHHHHHHCTTCEEEEEECCCSSHH-HHHHHHHHHHHH
T ss_pred -----ChHhCCHHHHhhCCCCC------------CCcCCcHHHHHHHHhhcCCceEEEEeCCCCCcc-hhHHHHHHHHHH
Confidence 69999999999999863 479999999999985 378999999654221 112478899999
Q ss_pred HhhcCC---ceeccCCHHHHHHHHHhcCCCcccchhhhcCCCccCCCCCcchhHHHhhHHHHHh-hcccccCCccccccC
Q 004721 245 SRSVVV---NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKT-FASGILVPKDYIWPV 320 (733)
Q Consensus 245 l~~~~~---~~i~SF~~~~l~~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~-~a~~i~~~~~~i~~~ 320 (733)
++++++ ++++||++..|++++++.| +.++++ +..... . ..++. .+.++.+.+..+.
T Consensus 124 l~~~~~~~~v~~~Sf~~~~l~~~~~~~p--~~~~~~-l~~~~~--------~-------~~~~~~~~~~~~~~~~~~~-- 183 (238)
T 3no3_A 124 VKRMKLAKRTDYISFNMDACKEFIRLCP--KSEVSY-LNGELS--------P-------MELKELGFTGLDYHYKVLQ-- 183 (238)
T ss_dssp HHHTTCGGGEEEEESCHHHHHHHHHHCT--TSCEEE-CSSCSC--------H-------HHHHHTTCCEEEEEHHHHH--
T ss_pred HHHcCCcCCEEEEECCHHHHHHHHHHCC--CCeEEE-EeCCCC--------H-------HHHHHCCCceEeccHHhhh--
Confidence 999986 4899999999999999998 678776 332110 0 11111 2333443322211
Q ss_pred CCccCCCCChHHHHHHHHcCCeEEEeecCCCCCcccCCCCChHHHHHHHHhcCCcccceEEecCCCCccccchh
Q 004721 321 DESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPSAAVDC 394 (733)
Q Consensus 321 ~~~~~~~~~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~~~~~l~~~G~~~VDgIiTD~P~~~~~~l~~ 394 (733)
.++++|+.+|++|++|++||||++ ++|++++++| |||||||+|+.++++++.
T Consensus 184 -------~~~~~v~~~~~~G~~v~~WTVn~~------------~~~~~l~~~G---VdgIiTD~P~~~~~~l~~ 235 (238)
T 3no3_A 184 -------SHPDWVKDCKVLGMTSNVWTVDDP------------KLMEEMIDMG---VDFITTDLPEETQKILHS 235 (238)
T ss_dssp -------HSTTHHHHHHHTTCEEEEECCCSH------------HHHHHHHHHT---CSEEEESCHHHHHHHHHH
T ss_pred -------CCHHHHHHHHHCCCEEEEECCCCH------------HHHHHHHHcC---CCEEECCCHHHHHHHHHh
Confidence 135699999999999999999874 8999999999 999999999999888765
|
| >1o1z_A GDPD, glycerophosphodiester phosphodiesterase; TM1621, glycerophosphodiester phosphodiesterase (GDPD), STRU genomics, JCSG, PSI; 1.60A {Thermotoga maritima} SCOP: c.1.18.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-43 Score=360.20 Aligned_cols=219 Identities=20% Similarity=0.194 Sum_probs=178.0
Q ss_pred CcceEEecCCCCCCCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeeccccccccccCCCcCCCcccccccccccCc
Q 004721 406 ANLLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSG 485 (733)
Q Consensus 406 ~~~~iIaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L~rtt~v~~~~~~~r~~~~~~~~~~~g 485 (733)
...+||||||+++.+||||++||++|++.|||+||+|||+||||++||+||.+|+|+|| ++|
T Consensus 11 ~~~~iiaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDG~lVv~HD~~l~Rtt~------------------~~g 72 (234)
T 1o1z_A 11 HHVIVLGHRGYSAKYLENTLEAFMKAIEAGANGVELDVRLSKDGKVVVSHDEDLKRLFG------------------LDV 72 (234)
T ss_dssp CCCEEEEETTTTTTSCTTSHHHHHHHHHTTCSEEEEEEEECTTSCEEECSSSEEHHHHC------------------EEE
T ss_pred ceEEEEEcCCCCCCCCCchHHHHHHHHHcCCCEEEEEeeEecCCCEEEEcCCcHHhcCC------------------cCc
Confidence 35689999999999999999999999999999999999999999999999999999999 777
Q ss_pred ccccccCHHHHhccCccccCCCccccccCCcCCCCCccccCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCCcHHHHH
Q 004721 486 IFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSV 565 (733)
Q Consensus 486 ~~i~d~T~~EL~~L~~~~~~~~~~~~~~~~~~~~g~~~IptLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~v 565 (733)
.|.++||+||++|+ +++||||+|+|+++++. +.++||||.+. +++++
T Consensus 73 -~v~d~T~~eL~~l~--------------------~~~iptL~evL~~~~~~---~~l~iEiK~~~---------~~~~v 119 (234)
T 1o1z_A 73 -KIRDATVSELKELT--------------------DGKITTLKEVFENVSDD---KIINIEIKERE---------AADAV 119 (234)
T ss_dssp -EGGGSCHHHHHHHT--------------------TTCCCBHHHHHHHSCTT---SEEEEEECCGG---------GHHHH
T ss_pred -CcccCcHHHHhcCC--------------------CCCCCCHHHHHHhcccC---CeEEEEeCCcc---------HHHHH
Confidence 89999999999987 16899999999999875 48999999753 45778
Q ss_pred HHHHHHcCCCCCCCceEEEEeCCHHHHHHHHhc-cCceEEEEeecccc-hhhhHHHHHHHHHHhHhcCCCcccccCCccc
Q 004721 566 MEALGNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIR-DALNQTIEDIKKFADSVVLSKESVYPLNSAF 643 (733)
Q Consensus 566 ~~~l~~~~~~~~~~~~vii~Sfd~~~L~~lk~~-p~~~~~~l~~~~~~-~~~~~~l~~i~~~a~~i~~~~~~i~~~~~~~ 643 (733)
++++++ . ++|+++||+ ++.+++. |++++++++..... +. ...+.... .-.+ ..+.+.. ..
T Consensus 120 ~~~l~~---~----~~vii~Sf~---l~~~~~~~p~~~~~~l~~~~~~~~~----~~~~~~~~-~~~~--~~i~~~~-~~ 181 (234)
T 1o1z_A 120 LEISKK---R----KNLIFSSFD---LDLLDEKFKGTKYGYLIDEENYGSI----ENFVERVE-KERP--YSLHVPY-QA 181 (234)
T ss_dssp HHHHTT---C----CSEEEEESC---HHHHHHHCTTSCEEEECCTTTTCSH----HHHHHHHH-HHCC--SEEEEEG-GG
T ss_pred HHHHhc---c----CCEEEEchh---HHHHHhhCCCCcEEEEeccccccCH----HHHHHHcC-CCCC--CEEEeCH-HH
Confidence 888877 3 699999999 9999999 99999999865211 11 11122111 0000 1222211 11
Q ss_pred cccc--hHHHHHHHHCCCcEEEEecCCcccccccccCCChHHHHHHHHhhcCcCEEEeCChHHHHHH
Q 004721 644 ITSA--TDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPMTAARY 708 (733)
Q Consensus 644 l~~~--~~~v~~~~~~Gl~v~~wTvn~~~~~~~~~~~~d~~~e~~~~l~~~GVdgIiTD~P~~~~~~ 708 (733)
+..+ +++++.+|++|++|++||+|+++ ++.+++ ++ ||||+||+|+.++++
T Consensus 182 ~g~~~~~~~v~~~~~~G~~v~~wTvn~~~-------------~~~~l~-~~-vdgIiTD~P~~~~~~ 233 (234)
T 1o1z_A 182 FELEYAVEVLRSFRKKGIVIFVWTLNDPE-------------IYRKIR-RE-IDGVITDEVELFVKL 233 (234)
T ss_dssp GGSHHHHHHHHHHHHTTCEEEEESCCCHH-------------HHHHHG-GG-CSEEEESCHHHHHHT
T ss_pred hcCCccHHHHHHHHHcCCEEEEeCCCCHH-------------HHHHHH-Hh-CCEEEcCCHHHHhhc
Confidence 1114 88999999999999999999987 889887 99 999999999999876
|
| >3i10_A Putative glycerophosphoryl diester phosphodiester; NP_812074.1; HET: MSE; 1.35A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-42 Score=361.99 Aligned_cols=255 Identities=18% Similarity=0.146 Sum_probs=204.1
Q ss_pred cCCcceEEecCCCCCCCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeeccccccccccCCCcCCCccccccccccc
Q 004721 404 KSANLLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAG 483 (733)
Q Consensus 404 ~~~~~~iIaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L~rtt~v~~~~~~~r~~~~~~~~~~ 483 (733)
.+.+|+||||||+++.+||||++||++|++.|+|+||+|||+||||++||+||.+|+|+|| +
T Consensus 14 ~~~~~~iiaHRG~~~~~pENTl~af~~A~~~g~d~iE~Dv~~TkDg~~vv~HD~~l~r~t~------------------~ 75 (278)
T 3i10_A 14 KSNKVLVVAHRGNWRSAPENSTAAIDSAIAMKVDIVEIDIQKTKDGQLILMHDNTLDRTTT------------------G 75 (278)
T ss_dssp TCCSCEEEEETSCTTTSCTTSHHHHHHHHHTTCSEEEEEEEECTTSCEEECSSSBSTTTBS------------------C
T ss_pred CCCCCEEEECCCCCCCCCccHHHHHHHHHHcCCCEEEEEEEECCCCeEEEecCcchhhcCC------------------C
Confidence 4567899999999999999999999999999999999999999999999999999999999 7
Q ss_pred CcccccccCHHHHhccCccccCCCccccccCCcCCCCCccccCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCCcHHH
Q 004721 484 SGIFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTN 563 (733)
Q Consensus 484 ~g~~i~d~T~~EL~~L~~~~~~~~~~~~~~~~~~~~g~~~IptLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~ 563 (733)
+| .|.++||+||++|+++.+.+ .+. +++||||+|+|+++++. +.++||.+. .+++
T Consensus 76 ~g-~v~~~t~~el~~l~~~~~~~----------~~~-~~~iptL~evl~~~~~~---~~~nie~~~----------~~~~ 130 (278)
T 3i10_A 76 KG-EIKNWTLADIKKLKLKDKDG----------KVT-NYVVPTLEEALLTAKGK---IMVNLDKAY----------DIFD 130 (278)
T ss_dssp CS-BGGGSCHHHHTTSCBBCTTS----------CBC-SCCCCBHHHHHHHHTTT---SEEEEESCG----------GGHH
T ss_pred Cc-eeecCcHHHHhcCCCCCCCc----------ccC-CCCCCCHHHHHHHhcCC---eEEEEecCc----------hHHH
Confidence 77 89999999999999875421 233 48999999999999874 367776421 3678
Q ss_pred HHHHHHHHcCCCCCCCceEEEEeCCHHHHHHHHhc-cCceEEEEeecccchhhhHHHHHHHHHHhHhcCCC-cccccCCc
Q 004721 564 SVMEALGNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDALNQTIEDIKKFADSVVLSK-ESVYPLNS 641 (733)
Q Consensus 564 ~v~~~l~~~~~~~~~~~~vii~Sfd~~~L~~lk~~-p~~~~~~l~~~~~~~~~~~~l~~i~~~a~~i~~~~-~~i~~~~~ 641 (733)
+|+++|+++++. ++|+++|+ ..++.+++. |++++++++...+....+...+.+..|+..+.+.. ..+++..
T Consensus 131 ~v~~~l~~~~~~----~~v~i~s~--~~l~~~~~~~p~~~~~~l~~p~i~~~~~~~~~~i~~~~~~~~p~~~~~~~~~~- 203 (278)
T 3i10_A 131 DVYAILEKTETQ----NQVIMKGG--QPIETVKREFGSYLDKVLYMPVIDLGNKEAEKIITDYLKELRPAAFEIIYSDP- 203 (278)
T ss_dssp HHHHHHHHHTCG----GGEEEEES--SCHHHHHHHHGGGTTTSEEEEEEETTSTTHHHHHHHHHHHTCCSEEEEEBCCT-
T ss_pred HHHHHHHHcCCC----CeEEEEEh--HHHHHHHHHCcCCccceEEEeeecccccchHHHHHHHHHhcCceEEEEeecCC-
Confidence 899999999998 89999994 468899988 99887777654333333344566777877777642 2222221
Q ss_pred cccccchHHHHHHHHCCCcEEEEecCCcccccccccCC-----ChHHHHHHHHhhc-CcCEEEeCChHHHHHHHHhhcc
Q 004721 642 AFITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFS-----DPTVEINTYYEGA-GIDGVITEFPMTAARYRSKLVR 714 (733)
Q Consensus 642 ~~l~~~~~~v~~~~~~Gl~v~~wTvn~~~~~~~~~~~~-----d~~~e~~~~l~~~-GVdgIiTD~P~~~~~~l~~~~~ 714 (733)
....+++++.+|++|++|++||+.+. +++.+.+ ||...|.+++ ++ |||+|+||+|+.+.+|+++++.
T Consensus 204 --~~~~~~~v~~~~~~g~~v~~nTlw~~---~~~g~~d~~a~~d~~~~~~~l~-~~~Gvd~I~TD~P~~l~~yL~~~~~ 276 (278)
T 3i10_A 204 --KNPLPPKIKQLLFKKSLIWYNTLWGS---LAGNHDDNLALTDPEKSYGYLI-EQLGARILQTDQPAYLLDYLRKKGW 276 (278)
T ss_dssp --TCSSHHHHHHHHTTTSEEEEECSSGG---GBTTCCHHHHHHCHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHTS
T ss_pred --ccchHHHHHHHHHCCCEEEEEecccc---cccCccchhhccChHHHHHHHH-hcCCCCEEEeCCHHHHHHHHhhccc
Confidence 23347899999999999999997543 2333332 6777899987 88 9999999999999999998753
|
| >1vd6_A Glycerophosphoryl diester phosphodiesterase; glycerophosphod phosphodiesterase, HB8; 1.30A {Thermus thermophilus} SCOP: c.1.18.3 PDB: 1v8e_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-43 Score=355.87 Aligned_cols=216 Identities=18% Similarity=0.180 Sum_probs=177.8
Q ss_pred CCcceEEecCCCCCCCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeeccccccccccCCCcCCCcccccccccccC
Q 004721 405 SANLLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGS 484 (733)
Q Consensus 405 ~~~~~iIaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L~rtt~v~~~~~~~r~~~~~~~~~~~ 484 (733)
.++|.||||||+++.+||||++||++|++.|+|+||+|||+||||++||+||.+|+ ++
T Consensus 5 ~~~~~iiaHRG~~~~~PENTl~Af~~A~~~G~d~iE~DV~lT~Dg~lVv~HD~~l~--~g-------------------- 62 (224)
T 1vd6_A 5 RQRPLRLGHRGAPLKAKENTLESFRLALEAGLDGVELDVWPTRDGVFAVRHDPDTP--LG-------------------- 62 (224)
T ss_dssp --CCEEEEETSCTTTSCTTSHHHHHHHHHTTCSEEEEEEEECTTSCEEECSCSEET--TE--------------------
T ss_pred CCCceEEECCCCCCCCCcchHHHHHHHHHcCCCEEEEEeeEecCCcEEEECCCccC--CC--------------------
Confidence 45689999999999999999999999999999999999999999999999999998 33
Q ss_pred cccccccCHHHHhccCccccCCCccccccCCcCCCCCccccCHHHHHHHHH-hcCCCceEEEEecchhHHHhhcCCcHHH
Q 004721 485 GIFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAK-NANSLSGVLISIENAVYLAEKQGMSVTN 563 (733)
Q Consensus 485 g~~i~d~T~~EL~~L~~~~~~~~~~~~~~~~~~~~g~~~IptLeEvL~~~~-~~~~~~~l~iEiK~~~~~~~~~~~~~~~ 563 (733)
.|.++||+||++|+ ++||||+|+|++++ +. + +.++||||.+.... ..+++
T Consensus 63 --~v~~~t~~eL~~l~---------------------~~iptL~evl~~~~~~~-~-~~l~iEiK~~~~~~----~~~~~ 113 (224)
T 1vd6_A 63 --PVFQVDYADLKAQE---------------------PDLPRLEEVLALKEAFP-Q-AVFNVELKSFPGLG----EEAAR 113 (224)
T ss_dssp --EGGGSCHHHHHHHS---------------------TTCCBHHHHHGGGGTCT-T-CEEEEEECCCTTSH----HHHHH
T ss_pred --ChhhCCHHHHHhcC---------------------CCCCCHHHHHHhhhccC-C-ceEEEEECCCCCcc----HHHHH
Confidence 69999999999875 47999999999998 32 3 48999999764321 13677
Q ss_pred HHHHHHHHcCCCCCCCceEEEEeCCHHHHHHHHhc-cCceEEEEeecccchhhhHHHHHHHHHHhHhcCCCcccccCCcc
Q 004721 564 SVMEALGNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNSA 642 (733)
Q Consensus 564 ~v~~~l~~~~~~~~~~~~vii~Sfd~~~L~~lk~~-p~~~~~~l~~~~~~~~~~~~l~~i~~~a~~i~~~~~~i~~~~~~ 642 (733)
++++++++ . ++|+++||++..|..+++. |++++++++.... ..++..+++ ..+.+.
T Consensus 114 ~v~~~l~~---~----~~v~i~Sf~~~~l~~~~~~~p~~~~~~l~~~~~-----------~~~~~~~~~--~~i~~~--- 170 (224)
T 1vd6_A 114 RLAALLRG---R----EGVWVSSFDPLALLALRKAAPGLPLGFLMAEDH-----------SALLPCLGV--EAVHPH--- 170 (224)
T ss_dssp HHHHHTTT---C----SSEEEEESCHHHHHHHHHHCTTSCEEEEESSCC-----------GGGGGGSCC--SEEEEB---
T ss_pred HHHHHHhc---C----CcEEEEeCCHHHHHHHHHHCCCCCEEEEecccc-----------HHHHHHcCC--cEEecC---
Confidence 88888877 3 6999999999999999999 9999999986521 012222322 233332
Q ss_pred ccccchHHHHHHHHCCCcEEEEecCCcccccccccCCChHHHHHHHHhhcCcCEEEeCChHHHHHH
Q 004721 643 FITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPMTAARY 708 (733)
Q Consensus 643 ~l~~~~~~v~~~~~~Gl~v~~wTvn~~~~~~~~~~~~d~~~e~~~~l~~~GVdgIiTD~P~~~~~~ 708 (733)
+...++++++.+|++|++|++||+|++. ++.+++ ++|||||+||+|+.+.++
T Consensus 171 ~~~~~~~~v~~~~~~G~~v~~wtvn~~~-------------~~~~l~-~~GvdgI~TD~p~~~~~~ 222 (224)
T 1vd6_A 171 HALVTEEAVAGWRKRGLFVVAWTVNEEG-------------EARRLL-ALGLDGLIGDRPEVLLPL 222 (224)
T ss_dssp GGGCCHHHHHHHHHTTCEEEEECCCCHH-------------HHHHHH-HTTCSEEEESCHHHHTTS
T ss_pred cccCCHHHHHHHHHCCCEEEEEeCCCHH-------------HHHHHH-hcCCCEEEcCCHHHHHHh
Confidence 2234689999999999999999999987 899886 999999999999988654
|
| >1vd6_A Glycerophosphoryl diester phosphodiesterase; glycerophosphod phosphodiesterase, HB8; 1.30A {Thermus thermophilus} SCOP: c.1.18.3 PDB: 1v8e_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-43 Score=355.38 Aligned_cols=216 Identities=14% Similarity=0.069 Sum_probs=174.4
Q ss_pred CCCCEEEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCCccccCccccccccccccccCCCC
Q 004721 89 GDPPFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVP 168 (733)
Q Consensus 89 ~~~~~viaHRG~~~~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l~rtt~~~~~~~~~~~~~~~~g~~ 168 (733)
..+|+||||||+++.+||||++||+.|++.|+| +||+|||+||||++||+||.+|+ .|
T Consensus 5 ~~~~~iiaHRG~~~~~PENTl~Af~~A~~~G~d--~iE~DV~lT~Dg~lVv~HD~~l~-----~g--------------- 62 (224)
T 1vd6_A 5 RQRPLRLGHRGAPLKAKENTLESFRLALEAGLD--GVELDVWPTRDGVFAVRHDPDTP-----LG--------------- 62 (224)
T ss_dssp --CCEEEEETSCTTTSCTTSHHHHHHHHHTTCS--EEEEEEEECTTSCEEECSCSEET-----TE---------------
T ss_pred CCCceEEECCCCCCCCCcchHHHHHHHHHcCCC--EEEEEeeEecCCcEEEECCCccC-----CC---------------
Confidence 356899999999999999999999999999999 99999999999999999999998 22
Q ss_pred CCccccccCCHHhhccccccccccCCCCCCCCCCcccccHHHHHHhhC---CCceEeeccCchhhhhcCCcHHHHHHHHH
Q 004721 169 TPGWFSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIK---PPGLWLNIQHDAFYAQHNLSMRSFVLSVS 245 (733)
Q Consensus 169 ~~g~~v~d~T~~eL~~l~~~~~~~~~~~~~~g~~~~iptL~e~l~~~~---~~~l~iEiK~~~~~~~~~~~~~~~v~~~l 245 (733)
.|.++||+||++|+ ++||||+|+|++++ +..++||+|.+..... .+++.+++++
T Consensus 63 ----~v~~~t~~eL~~l~----------------~~iptL~evl~~~~~~~~~~l~iEiK~~~~~~~---~~~~~v~~~l 119 (224)
T 1vd6_A 63 ----PVFQVDYADLKAQE----------------PDLPRLEEVLALKEAFPQAVFNVELKSFPGLGE---EAARRLAALL 119 (224)
T ss_dssp ----EGGGSCHHHHHHHS----------------TTCCBHHHHHGGGGTCTTCEEEEEECCCTTSHH---HHHHHHHHHT
T ss_pred ----ChhhCCHHHHHhcC----------------CCCCCHHHHHHhhhccCCceEEEEECCCCCccH---HHHHHHHHHH
Confidence 69999999999986 38999999999997 3789999996543211 3678889999
Q ss_pred hhcCCceeccCCHHHHHHHHHhcCCCcccchhhhcCCCccCCCCCcchhHHHhhHHHHHhhcccccCCccccccCCCccC
Q 004721 246 RSVVVNYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTFASGILVPKDYIWPVDESLY 325 (733)
Q Consensus 246 ~~~~~~~i~SF~~~~l~~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~i~~~~~~i~~~~~~~~ 325 (733)
++.+.++++||++..|++++++.| +.++++ +..... .... .. ..+.++++++..+
T Consensus 120 ~~~~~v~i~Sf~~~~l~~~~~~~p--~~~~~~-l~~~~~---------~~~~---~~--~~~~~i~~~~~~~-------- 174 (224)
T 1vd6_A 120 RGREGVWVSSFDPLALLALRKAAP--GLPLGF-LMAEDH---------SALL---PC--LGVEAVHPHHALV-------- 174 (224)
T ss_dssp TTCSSEEEEESCHHHHHHHHHHCT--TSCEEE-EESSCC---------GGGG---GG--SCCSEEEEBGGGC--------
T ss_pred hcCCcEEEEeCCHHHHHHHHHHCC--CCCEEE-Eecccc---------HHHH---HH--cCCcEEecCcccC--------
Confidence 885557999999999999999998 677776 332110 0000 00 1244455443332
Q ss_pred CCCChHHHHHHHHcCCeEEEeecCCCCCcccCCCCChHHHHHHHHhcCCcccceEEecCCCCccccc
Q 004721 326 LLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPSAAV 392 (733)
Q Consensus 326 ~~~~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~~~~~l~~~G~~~VDgIiTD~P~~~~~~l 392 (733)
++++|+.+|++|++|++||||++ +++++++++| ||||+||+|+.+++++
T Consensus 175 ---~~~~v~~~~~~G~~v~~wtvn~~------------~~~~~l~~~G---vdgI~TD~p~~~~~~~ 223 (224)
T 1vd6_A 175 ---TEEAVAGWRKRGLFVVAWTVNEE------------GEARRLLALG---LDGLIGDRPEVLLPLG 223 (224)
T ss_dssp ---CHHHHHHHHHTTCEEEEECCCCH------------HHHHHHHHTT---CSEEEESCHHHHTTSC
T ss_pred ---CHHHHHHHHHCCCEEEEEeCCCH------------HHHHHHHhcC---CCEEEcCCHHHHHHhc
Confidence 47899999999999999999864 8999999999 9999999999877654
|
| >1o1z_A GDPD, glycerophosphodiester phosphodiesterase; TM1621, glycerophosphodiester phosphodiesterase (GDPD), STRU genomics, JCSG, PSI; 1.60A {Thermotoga maritima} SCOP: c.1.18.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-43 Score=357.86 Aligned_cols=221 Identities=16% Similarity=0.182 Sum_probs=176.2
Q ss_pred CCCEEEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCCccccCccccccccccccccCCCCC
Q 004721 90 DPPFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPT 169 (733)
Q Consensus 90 ~~~~viaHRG~~~~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l~rtt~~~~~~~~~~~~~~~~g~~~ 169 (733)
...+||||||+++.+||||++||+.|++.|+| +||+|||+||||++||+||.+|+||||+.+
T Consensus 11 ~~~~iiaHRG~~~~~PENTl~Af~~A~~~Gad--~iE~DV~lTkDG~lVv~HD~~l~Rtt~~~g---------------- 72 (234)
T 1o1z_A 11 HHVIVLGHRGYSAKYLENTLEAFMKAIEAGAN--GVELDVRLSKDGKVVVSHDEDLKRLFGLDV---------------- 72 (234)
T ss_dssp CCCEEEEETTTTTTSCTTSHHHHHHHHHTTCS--EEEEEEEECTTSCEEECSSSEEHHHHCEEE----------------
T ss_pred ceEEEEEcCCCCCCCCCchHHHHHHHHHcCCC--EEEEEeeEecCCCEEEEcCCcHHhcCCcCc----------------
Confidence 46789999999999999999999999999999 999999999999999999999999999876
Q ss_pred CccccccCCHHhhccccccccccCCCCCCCCCCcccccHHHHHHhhCC-CceEeeccCchhhhhcCCcHHHHHHHHHhhc
Q 004721 170 PGWFSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKP-PGLWLNIQHDAFYAQHNLSMRSFVLSVSRSV 248 (733)
Q Consensus 170 ~g~~v~d~T~~eL~~l~~~~~~~~~~~~~~g~~~~iptL~e~l~~~~~-~~l~iEiK~~~~~~~~~~~~~~~v~~~l~~~ 248 (733)
.|.++||+||++|+ | ++||||+|+|++++. ..++||+|.+ ..++.+++++++.
T Consensus 73 ---~v~d~T~~eL~~l~-------------~--~~iptL~evL~~~~~~~~l~iEiK~~--------~~~~~v~~~l~~~ 126 (234)
T 1o1z_A 73 ---KIRDATVSELKELT-------------D--GKITTLKEVFENVSDDKIINIEIKER--------EAADAVLEISKKR 126 (234)
T ss_dssp ---EGGGSCHHHHHHHT-------------T--TCCCBHHHHHHHSCTTSEEEEEECCG--------GGHHHHHHHHTTC
T ss_pred ---CcccCcHHHHhcCC-------------C--CCCCCHHHHHHhcccCCeEEEEeCCc--------cHHHHHHHHHhcc
Confidence 79999999999997 2 699999999999975 7899999965 2567788888885
Q ss_pred CCceeccCCHHHHHHHHHhcCCCcccchhhhcCCCccCCCCCcchhHHHhhHHHHH-hhcccccCCccccccCCCccCCC
Q 004721 249 VVNYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIK-TFASGILVPKDYIWPVDESLYLL 327 (733)
Q Consensus 249 ~~~~i~SF~~~~l~~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~-~~a~~i~~~~~~i~~~~~~~~~~ 327 (733)
+.++++||+ +++++++.| +.++++ +...... ..+.... ..+. .+..++++++..+.. .
T Consensus 127 ~~vii~Sf~---l~~~~~~~p--~~~~~~-l~~~~~~-----~~~~~~~---~~~~~~~~~~i~~~~~~~g~-------~ 185 (234)
T 1o1z_A 127 KNLIFSSFD---LDLLDEKFK--GTKYGY-LIDEENY-----GSIENFV---ERVEKERPYSLHVPYQAFEL-------E 185 (234)
T ss_dssp CSEEEEESC---HHHHHHHCT--TSCEEE-ECCTTTT-----CSHHHHH---HHHHHHCCSEEEEEGGGGGS-------H
T ss_pred CCEEEEchh---HHHHHhhCC--CCcEEE-Eeccccc-----cCHHHHH---HHcCCCCCCEEEeCHHHhcC-------C
Confidence 556999999 999999998 677776 3322110 0111111 1111 122566665544300 0
Q ss_pred CChHHHHHHHHcCCeEEEeecCCCCCcccCCCCChHHHHHHHHhcCCcccceEEecCCCCcccc
Q 004721 328 PHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPSAA 391 (733)
Q Consensus 328 ~~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~~~~~l~~~G~~~VDgIiTD~P~~~~~~ 391 (733)
..+++|+.+|++|++|++||||++ ++|++++ ++ ||||+||+|+.++++
T Consensus 186 ~~~~~v~~~~~~G~~v~~wTvn~~------------~~~~~l~---~~-vdgIiTD~P~~~~~~ 233 (234)
T 1o1z_A 186 YAVEVLRSFRKKGIVIFVWTLNDP------------EIYRKIR---RE-IDGVITDEVELFVKL 233 (234)
T ss_dssp HHHHHHHHHHHTTCEEEEESCCCH------------HHHHHHG---GG-CSEEEESCHHHHHHT
T ss_pred ccHHHHHHHHHcCCEEEEeCCCCH------------HHHHHHH---Hh-CCEEEcCCHHHHhhc
Confidence 016799999999999999999874 7899998 45 999999999987665
|
| >3i10_A Putative glycerophosphoryl diester phosphodiester; NP_812074.1; HET: MSE; 1.35A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-40 Score=343.97 Aligned_cols=251 Identities=15% Similarity=0.100 Sum_probs=186.0
Q ss_pred CCCCCEEEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCCccccCccccccccccccccCCC
Q 004721 88 TGDPPFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGV 167 (733)
Q Consensus 88 ~~~~~~viaHRG~~~~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l~rtt~~~~~~~~~~~~~~~~g~ 167 (733)
.+.+|+||||||+++.+||||++||+.|++.|+| +||+|||+||||++||+||.+|+|||++.+
T Consensus 14 ~~~~~~iiaHRG~~~~~pENTl~af~~A~~~g~d--~iE~Dv~~TkDg~~vv~HD~~l~r~t~~~g-------------- 77 (278)
T 3i10_A 14 KSNKVLVVAHRGNWRSAPENSTAAIDSAIAMKVD--IVEIDIQKTKDGQLILMHDNTLDRTTTGKG-------------- 77 (278)
T ss_dssp TCCSCEEEEETSCTTTSCTTSHHHHHHHHHTTCS--EEEEEEEECTTSCEEECSSSBSTTTBSCCS--------------
T ss_pred CCCCCEEEECCCCCCCCCccHHHHHHHHHHcCCC--EEEEEEEECCCCeEEEecCcchhhcCCCCc--------------
Confidence 4567999999999999999999999999999999 999999999999999999999999999876
Q ss_pred CCCccccccCCHHhhccccccccccCCCCCCCCCCcccccHHHHHHhhCC-CceEeeccCchhhhhcCCcHHHHHHHHHh
Q 004721 168 PTPGWFSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKP-PGLWLNIQHDAFYAQHNLSMRSFVLSVSR 246 (733)
Q Consensus 168 ~~~g~~v~d~T~~eL~~l~~~~~~~~~~~~~~g~~~~iptL~e~l~~~~~-~~l~iEiK~~~~~~~~~~~~~~~v~~~l~ 246 (733)
.|.++||+||++|+++.++. .+.+ ++||||+|+|++++. +.++||.+ ..+++.++++++
T Consensus 78 -----~v~~~t~~el~~l~~~~~~~----~~~~--~~iptL~evl~~~~~~~~~nie~~---------~~~~~~v~~~l~ 137 (278)
T 3i10_A 78 -----EIKNWTLADIKKLKLKDKDG----KVTN--YVVPTLEEALLTAKGKIMVNLDKA---------YDIFDDVYAILE 137 (278)
T ss_dssp -----BGGGSCHHHHTTSCBBCTTS----CBCS--CCCCBHHHHHHHHTTTSEEEEESC---------GGGHHHHHHHHH
T ss_pred -----eeecCcHHHHhcCCCCCCCc----ccCC--CCCCCHHHHHHHhcCCeEEEEecC---------chHHHHHHHHHH
Confidence 79999999999999997642 3444 899999999999975 45556532 146789999999
Q ss_pred hcCC---ceeccCCHHHHHHHHHhcCCCcccchhhhcCCCccCCCCCcchhHHHhhHHHHHhhcccccCCccccccCCCc
Q 004721 247 SVVV---NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTFASGILVPKDYIWPVDES 323 (733)
Q Consensus 247 ~~~~---~~i~SF~~~~l~~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~i~~~~~~i~~~~~~ 323 (733)
++++ ++++|+ ..+++++++.| +.+..++++..-. ...+. ..+.+..++..+.|....+...
T Consensus 138 ~~~~~~~v~i~s~--~~l~~~~~~~p--~~~~~~l~~p~i~--~~~~~-------~~~~i~~~~~~~~p~~~~~~~~--- 201 (278)
T 3i10_A 138 KTETQNQVIMKGG--QPIETVKREFG--SYLDKVLYMPVID--LGNKE-------AEKIITDYLKELRPAAFEIIYS--- 201 (278)
T ss_dssp HHTCGGGEEEEES--SCHHHHHHHHG--GGTTTSEEEEEEE--TTSTT-------HHHHHHHHHHHTCCSEEEEEBC---
T ss_pred HcCCCCeEEEEEh--HHHHHHHHHCc--CCccceEEEeeec--ccccc-------hHHHHHHHHHhcCceEEEEeec---
Confidence 9987 378883 45889999888 5666653321100 00000 1233444444444432111111
Q ss_pred cCCCCChHHHHHHHHcCCeEEEeecCCCCCcccCCC----C-ChHHHHHHHHhc-CCcccceEEecCCCCccccchhc
Q 004721 324 LYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYS----Y-DPLTEYLSFIDN-GDFSVDGVLSDFPLTPSAAVDCF 395 (733)
Q Consensus 324 ~~~~~~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~----~-d~~~~~~~l~~~-G~~~VDgIiTD~P~~~~~~l~~~ 395 (733)
......+++|+.+|++|++|++||+.++- ...+. + |+...|.+++++ | ||+|+||+|+.+.++++..
T Consensus 202 ~~~~~~~~~v~~~~~~g~~v~~nTlw~~~--~~g~~d~~a~~d~~~~~~~l~~~~G---vd~I~TD~P~~l~~yL~~~ 274 (278)
T 3i10_A 202 DPKNPLPPKIKQLLFKKSLIWYNTLWGSL--AGNHDDNLALTDPEKSYGYLIEQLG---ARILQTDQPAYLLDYLRKK 274 (278)
T ss_dssp CTTCSSHHHHHHHHTTTSEEEEECSSGGG--BTTCCHHHHHHCHHHHHHHHHHTTC---EEEEEESCHHHHHHHHHHH
T ss_pred CCccchHHHHHHHHHCCCEEEEEeccccc--ccCccchhhccChHHHHHHHHhcCC---CCEEEeCCHHHHHHHHhhc
Confidence 11123478999999999999999974320 00000 1 455679999999 9 9999999999998888653
|
| >1xx1_A Smase I, sphingomyelinase I; structure, quick cryo-soaking, activity, smase D, hydrolase; HET: EPE; 1.75A {Loxosceles laeta} PDB: 2f9r_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-34 Score=302.08 Aligned_cols=233 Identities=11% Similarity=0.107 Sum_probs=168.0
Q ss_pred Ccc-eEEecCCCCCCCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeeccc---cccccccCCCcCCCccccccccc
Q 004721 406 ANL-LVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFIN---LINSTNAAQSKFNSITTTIPEIM 481 (733)
Q Consensus 406 ~~~-~iIaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~---L~rtt~v~~~~~~~r~~~~~~~~ 481 (733)
.+| +||||| |||++||++|++.|||+||+|||+ |||++||+||.+ |+|+||
T Consensus 4 ~~p~~iiaHr-------ENTl~Af~~A~~~Gad~IE~DV~l-kDG~lVv~HD~~~~~l~Rtt~----------------- 58 (285)
T 1xx1_A 4 RRPIWNLAHM-------VNAVAQIPDFLDLGANALEADVTF-KGSVPTYTYHGTPCDFGRDCI----------------- 58 (285)
T ss_dssp SEEEEEEESC-------CCSTTHHHHHHHHTCSEEEEEEEE-ETTEEEEEECCSSCCTTSCSC-----------------
T ss_pred CCCcEEEEeh-------hccHHHHHHHHHhCCCEEEEEEEE-ECCEEEEEcCCcccccccccC-----------------
Confidence 456 899999 999999999999999999999999 999999999999 999999
Q ss_pred ccCcccccccCHHHHhccCccccCCCccccccCCcCCCCCccccCHHHHHHHHHhcCCCceEEEEecchhHHHhh---cC
Q 004721 482 AGSGIFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEK---QG 558 (733)
Q Consensus 482 ~~~g~~i~d~T~~EL~~L~~~~~~~~~~~~~~~~~~~~g~~~IptLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~---~~ 558 (733)
++| .|.++ ++||++|++ ++ ++.|. +.|+ .++||||.+....+. .+
T Consensus 59 -~~g-~v~d~-l~eL~~l~~--~~---------~~~~~---------~~L~---------~l~iEiK~~~~~~~~~~~~~ 106 (285)
T 1xx1_A 59 -RWE-YFNVF-LKTLREYTT--PG---------NAKYR---------DGFI---------LFVLDLKTGSLSNDQVRPAG 106 (285)
T ss_dssp -CEE-EHHHH-HHHHHHHTS--TT---------CTTCC---------TTCC---------EEEEEECCTTCCHHHHHHHH
T ss_pred -CCc-cHHHH-HHHHHHccc--CC---------CCccc---------cccc---------EEEEecCCCcccccccchhh
Confidence 777 79999 999999997 21 12232 2221 599999976532110 00
Q ss_pred CcHHHHHHHHHHHcCCCCCCCce----EEEEeCCHHHHHH-HHhc--------cCceEEEEeecccchhhhHHHHHHHHH
Q 004721 559 MSVTNSVMEALGNAGYNKQTALK----VMIQSTDSSVLMK-LREK--------TSYELVYKVKENIRDALNQTIEDIKKF 625 (733)
Q Consensus 559 ~~~~~~v~~~l~~~~~~~~~~~~----vii~Sfd~~~L~~-lk~~--------p~~~~~~l~~~~~~~~~~~~l~~i~~~ 625 (733)
..+++ .+++++++.....++ |+++||++..|.+ ++++ |.+++++++...... +...+..+..+
T Consensus 107 ~~~~~---~ll~~~~~~~~~~~~~~~~v~i~SF~~~~l~~~~~~~~~~~~~~~p~~~~~~l~~~~~~~-~~~~~~~~~~~ 182 (285)
T 1xx1_A 107 ENVAK---ELLQNYWNNGNNGGRAYVVLSLPDIGHYEFVRGFKEVLKKEGHEDLLEKVGYDFSGPYLP-SLPTLDATHEA 182 (285)
T ss_dssp HHHHH---HHHHHTSGGGSSCCCCEEEEEESCGGGHHHHHHHHHHHHHTTCGGGGGGEEEEECCCCSS-SCCCHHHHHHH
T ss_pred hhHHH---HHHHHHhhccccccccceeEEEEeCCHHHHHHHHHHHhhhccccCcccceEEeccccccc-chhhHHHHHHH
Confidence 01222 256777653111135 9999999999999 9875 889999998653100 00112334445
Q ss_pred HhHhcCCCcccccCC--------ccccccchHHHHHHHHCCC--cEEEEecCCcccccccccCCChHHHHHHHHhhcCcC
Q 004721 626 ADSVVLSKESVYPLN--------SAFITSATDIVQRLQSFKL--PVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGID 695 (733)
Q Consensus 626 a~~i~~~~~~i~~~~--------~~~l~~~~~~v~~~~~~Gl--~v~~wTvn~~~~~~~~~~~~d~~~e~~~~l~~~GVd 695 (733)
+..+++.. ..+... ..+...++.+++.+|++|+ +|++||||++. ++.+++ ++|||
T Consensus 183 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~Glg~~V~~WTvn~~~-------------~~~~l~-~~GVD 247 (285)
T 1xx1_A 183 YKKAGVDG-HIWLSDGLTNFSPLGDMARLKEAIKSRDSANGFINKIYYWSVDKVS-------------TTKAAL-DVGVD 247 (285)
T ss_dssp HHHHTCCS-CBEEEECSCCSSHHHHHHHHHHHHHHHTSTTCCCCEEEEECCCSHH-------------HHHHHH-HHTCS
T ss_pred HHHhCCCC-ccccccccccccccccHHHHhHHHHHHHHhcCCCCeEEEeeCCCHH-------------HHHHHH-hcCCC
Confidence 55554422 111100 0022346789999999999 99999999997 899997 99999
Q ss_pred EEEeCChHHHHHHHHhhcc
Q 004721 696 GVITEFPMTAARYRSKLVR 714 (733)
Q Consensus 696 gIiTD~P~~~~~~l~~~~~ 714 (733)
|||||+|+.+.+++++...
T Consensus 248 gIiTD~P~~~~~~l~~~~~ 266 (285)
T 1xx1_A 248 GIMTNYPNVLIGVLKESGY 266 (285)
T ss_dssp EEEESCHHHHHHHHHSTTT
T ss_pred EEEeCCHHHHHHHHhhhcc
Confidence 9999999999999987643
|
| >1xx1_A Smase I, sphingomyelinase I; structure, quick cryo-soaking, activity, smase D, hydrolase; HET: EPE; 1.75A {Loxosceles laeta} PDB: 2f9r_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-34 Score=305.04 Aligned_cols=232 Identities=11% Similarity=0.004 Sum_probs=156.7
Q ss_pred CCC-EEEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCC---CccccCccccccccccccccC
Q 004721 90 DPP-FVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLK---LDNASNIAQIFKTQQKNYLVN 165 (733)
Q Consensus 90 ~~~-~viaHRG~~~~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~---l~rtt~~~~~~~~~~~~~~~~ 165 (733)
++| +||||| |||++||+.|++.||| +||+|||+ |||++||+||.+ |+|||++.+
T Consensus 4 ~~p~~iiaHr-------ENTl~Af~~A~~~Gad--~IE~DV~l-kDG~lVv~HD~~~~~l~Rtt~~~g------------ 61 (285)
T 1xx1_A 4 RRPIWNLAHM-------VNAVAQIPDFLDLGAN--ALEADVTF-KGSVPTYTYHGTPCDFGRDCIRWE------------ 61 (285)
T ss_dssp SEEEEEEESC-------CCSTTHHHHHHHHTCS--EEEEEEEE-ETTEEEEEECCSSCCTTSCSCCEE------------
T ss_pred CCCcEEEEeh-------hccHHHHHHHHHhCCC--EEEEEEEE-ECCEEEEEcCCcccccccccCCCc------------
Confidence 455 899999 9999999999999999 99999999 999999999999 999999876
Q ss_pred CCCCCccccccCCHHhhccccccccccCCCCCCCCCCcccccHHHHHHhhCCCceEeeccCchhhhhc----CCcHHHHH
Q 004721 166 GVPTPGWFSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKPPGLWLNIQHDAFYAQH----NLSMRSFV 241 (733)
Q Consensus 166 g~~~~g~~v~d~T~~eL~~l~~~~~~~~~~~~~~g~~~~iptL~e~l~~~~~~~l~iEiK~~~~~~~~----~~~~~~~v 241 (733)
.|.++ |+||++|++ ++ . |++++.|+ .++||||.+...... +..+++.+
T Consensus 62 -------~v~d~-l~eL~~l~~--~~---~----------~~~~~~L~-----~l~iEiK~~~~~~~~~~~~~~~~~~~l 113 (285)
T 1xx1_A 62 -------YFNVF-LKTLREYTT--PG---N----------AKYRDGFI-----LFVLDLKTGSLSNDQVRPAGENVAKEL 113 (285)
T ss_dssp -------EHHHH-HHHHHHHTS--TT---C----------TTCCTTCC-----EEEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred -------cHHHH-HHHHHHccc--CC---C----------Cccccccc-----EEEEecCCCcccccccchhhhhHHHHH
Confidence 79999 999999998 21 2 23333332 799999976432110 11133333
Q ss_pred HHHHhhc----CC----ceeccCCHHHHHH-HHHh-------cCCCcccchhhhcCCCccCCCCCcchhHHHhhHHHHHh
Q 004721 242 LSVSRSV----VV----NYISSPEVNFLRS-IAAR-------FRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKT 305 (733)
Q Consensus 242 ~~~l~~~----~~----~~i~SF~~~~l~~-l~~~-------~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~ 305 (733)
++..... .. ++|+||++..|++ ++++ .| ..+++++ ...... + +........ ..+..
T Consensus 114 l~~~~~~~~~~~~~~~~v~i~SF~~~~l~~~~~~~~~~~~~~~p--~~~~~~l-~~~~~~-~-~~~~~~~~~---~~~~~ 185 (285)
T 1xx1_A 114 LQNYWNNGNNGGRAYVVLSLPDIGHYEFVRGFKEVLKKEGHEDL--LEKVGYD-FSGPYL-P-SLPTLDATH---EAYKK 185 (285)
T ss_dssp HHHTSGGGSSCCCCEEEEEESCGGGHHHHHHHHHHHHHTTCGGG--GGGEEEE-ECCCCS-S-SCCCHHHHH---HHHHH
T ss_pred HHHHhhccccccccceeEEEEeCCHHHHHHHHHHHhhhccccCc--ccceEEe-cccccc-c-chhhHHHHH---HHHHH
Confidence 3333322 23 6899999999999 9999 77 6777763 322100 0 001111111 11111
Q ss_pred -hcccccCCccccccCC--CccCCCCChHHHHHHHHcCC--eEEEeecCCCCCcccCCCCChHHHHHHHHhcCCcccceE
Q 004721 306 -FASGILVPKDYIWPVD--ESLYLLPHTTIVLDAHKERL--EVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGV 380 (733)
Q Consensus 306 -~a~~i~~~~~~i~~~~--~~~~~~~~~~~v~~ah~~Gl--~V~~WTvn~~~~~~~~~~~d~~~~~~~l~~~G~~~VDgI 380 (733)
.+.+ +++........ ..++...++.+++.+|++|+ +|++||||++ ++|++++++| ||||
T Consensus 186 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~Glg~~V~~WTvn~~------------~~~~~l~~~G---VDgI 249 (285)
T 1xx1_A 186 AGVDG-HIWLSDGLTNFSPLGDMARLKEAIKSRDSANGFINKIYYWSVDKV------------STTKAALDVG---VDGI 249 (285)
T ss_dssp HTCCS-CBEEEECSCCSSHHHHHHHHHHHHHHHTSTTCCCCEEEEECCCSH------------HHHHHHHHHT---CSEE
T ss_pred hCCCC-ccccccccccccccccHHHHhHHHHHHHHhcCCCCeEEEeeCCCH------------HHHHHHHhcC---CCEE
Confidence 1121 22111000000 00011124678999999999 9999999875 8999999999 9999
Q ss_pred EecCCCCccccchhc
Q 004721 381 LSDFPLTPSAAVDCF 395 (733)
Q Consensus 381 iTD~P~~~~~~l~~~ 395 (733)
|||+|+.++++++..
T Consensus 250 iTD~P~~~~~~l~~~ 264 (285)
T 1xx1_A 250 MTNYPNVLIGVLKES 264 (285)
T ss_dssp EESCHHHHHHHHHST
T ss_pred EeCCHHHHHHHHhhh
Confidence 999999988877653
|
| >3rlg_A Sphingomyelin phosphodiesterase D lisictox-alphai; TIM beta/alpha-barrel, PLC-like phosphodiesterase, inactive H12A phospholipase D; HET: PGE; 1.60A {Loxosceles intermedia} PDB: 3rlh_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=6.1e-22 Score=202.45 Aligned_cols=231 Identities=12% Similarity=0.117 Sum_probs=143.8
Q ss_pred CcceEEecCCCCCCCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeecccc---ccccccCCCcCCCcccccccccc
Q 004721 406 ANLLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINL---INSTNAAQSKFNSITTTIPEIMA 482 (733)
Q Consensus 406 ~~~~iIaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L---~rtt~v~~~~~~~r~~~~~~~~~ 482 (733)
+++.+|||| |||++||+.|++.||++||+||++|+||+||++||... .|.|+.
T Consensus 27 rp~~~i~H~-------vNTl~~~~~a~~~GAn~IE~DV~~~~dg~~v~~hhg~pcdc~r~C~~----------------- 82 (302)
T 3rlg_A 27 RPIWIMGAM-------VNAIGQIDEFVNLGANSIETDVSFDDNANPEYTYHGIPCDCGRNCKK----------------- 82 (302)
T ss_dssp EEEEEEESC-------CCSHHHHHHHHHTTCSEEEEEECBCTTSCBCBCCCCSSCCTTCCSCC-----------------
T ss_pred CceEEEeeh-------hhhHHHHHHHHHcCCCEEEEEEEECCCCCEEEEECCCCcchhccCCC-----------------
Confidence 345899997 99999999999999999999999999999999999854 444431
Q ss_pred cCcccccccCHHHHhccCccccCCCccccccCCcCCCCCccccCHHHHHHHHHhcCCCceEEEEecchhHHHh---hcCC
Q 004721 483 GSGIFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAE---KQGM 559 (733)
Q Consensus 483 ~~g~~i~d~T~~EL~~L~~~~~~~~~~~~~~~~~~~~g~~~IptLeEvL~~~~~~~~~~~l~iEiK~~~~~~~---~~~~ 559 (733)
+..+.+ .+++|+++..- .++.|.. +.+-+++++|.+....+ ..|.
T Consensus 83 --~~~~~~-~l~~lr~~ttp-----------g~~k~~~------------------~l~lv~~DlK~~~l~~~~~~~aG~ 130 (302)
T 3rlg_A 83 --YENFND-FLKGLRSATTP-----------GNSKYQE------------------KLVLVVFDLKTGSLYDNQANDAGK 130 (302)
T ss_dssp --CCBHHH-HHHHHHHHHST-----------TSTTCCT------------------TCCEEEEEECGGGSCGGGHHHHHH
T ss_pred --CccHHH-HHHHHHHhcCC-----------CCCcccc------------------ceEEEEEEcCCCCCCHHHHHHhHH
Confidence 113444 55666554321 0112221 12468999996543221 2355
Q ss_pred cHHHHHHHHHHHcCCCCCCCceEEEEeCCHHHHHHHHhc------cC-----ceEEEEeecccchhhhHHHHHHHHHHhH
Q 004721 560 SVTNSVMEALGNAGYNKQTALKVMIQSTDSSVLMKLREK------TS-----YELVYKVKENIRDALNQTIEDIKKFADS 628 (733)
Q Consensus 560 ~~~~~v~~~l~~~~~~~~~~~~vii~Sfd~~~L~~lk~~------p~-----~~~~~l~~~~~~~~~~~~l~~i~~~a~~ 628 (733)
++++++++.+-+.|....+ -.|+||+|+.+.++.++.. .. -++++=+... ..++.+.+....
T Consensus 131 ~la~kLl~~~w~~g~~~~r-a~vilsi~~~~~~~~l~gf~~~l~~~g~~~LldkvG~Dfs~n------~dl~~i~~~~~~ 203 (302)
T 3rlg_A 131 KLAKNLLQHYWNNGNNGGR-AYIVLSIPDLNHYPLIKGFKDQLTKDGHPELMDKVGHDFSGN------DDIGDVGKAYKK 203 (302)
T ss_dssp HHHHHHHHHTSGGGSSCCC-CEEEEEESCGGGTHHHHHHHHHHHHTTCGGGGGGEEEEECSC------CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCce-eEEEEecCcchHHHHHHHHHHHHhhcCHHHHhhhcCccccCC------CCHHHHHHHHHh
Confidence 6777887777765544332 4899999998766555432 11 1233333221 113344333333
Q ss_pred hcCCCcccccCC--ccccccchHHHHHHHH-----CC--CcEEEEecCCcccccccccCCChHHHHHHHHhhcCcCEEEe
Q 004721 629 VVLSKESVYPLN--SAFITSATDIVQRLQS-----FK--LPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVIT 699 (733)
Q Consensus 629 i~~~~~~i~~~~--~~~l~~~~~~v~~~~~-----~G--l~v~~wTvn~~~~~~~~~~~~d~~~e~~~~l~~~GVdgIiT 699 (733)
.++.. .++..+ .+.+......++.+.+ .| ++|++||||++. ++.+++ ++|||||||
T Consensus 204 ~Gi~~-h~wqsDGItnC~~r~~~rl~~ai~~RDs~~~~i~~V~vWTVNd~~-------------~m~~l~-~~GVDGIIT 268 (302)
T 3rlg_A 204 AGITG-HIWQSDGITNCLPRGLSRVNAAVANRDSANGFINKVYYWTVDKRS-------------TTRDAL-DAGVDGIMT 268 (302)
T ss_dssp TTCCS-CBEEEEECCTTSCCCSHHHHHHHHHHTSTTCCCSEEEEECCCSHH-------------HHHHHH-HTTCSEEEE
T ss_pred cCCcC-cEEecCCcccceeccHHHHHHHHHhccCCCCceEEEEEEeCCCHH-------------HHHHHH-HcCCCEEEC
Confidence 33211 111110 0111112222332222 23 789999999997 899997 999999999
Q ss_pred CChHHHHHHHHhhcc
Q 004721 700 EFPMTAARYRSKLVR 714 (733)
Q Consensus 700 D~P~~~~~~l~~~~~ 714 (733)
|+|+.+.+++++++-
T Consensus 269 D~Pd~l~~~l~~~~~ 283 (302)
T 3rlg_A 269 NYPDVITDVLNEAAY 283 (302)
T ss_dssp SCHHHHHHHHTSHHH
T ss_pred CCHHHHHHHHHhcCc
Confidence 999999999986643
|
| >3rlg_A Sphingomyelin phosphodiesterase D lisictox-alphai; TIM beta/alpha-barrel, PLC-like phosphodiesterase, inactive H12A phospholipase D; HET: PGE; 1.60A {Loxosceles intermedia} PDB: 3rlh_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.7e-22 Score=206.62 Aligned_cols=229 Identities=13% Similarity=0.050 Sum_probs=139.0
Q ss_pred CCCEEEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCCc---cccCccccccccccccccCC
Q 004721 90 DPPFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLD---NASNIAQIFKTQQKNYLVNG 166 (733)
Q Consensus 90 ~~~~viaHRG~~~~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l~---rtt~~~~~~~~~~~~~~~~g 166 (733)
+|..||||| |||++||+.|+++||+ +||+||++|+||++|++||...- |.+....
T Consensus 27 rp~~~i~H~-------vNTl~~~~~a~~~GAn--~IE~DV~~~~dg~~v~~hhg~pcdc~r~C~~~~------------- 84 (302)
T 3rlg_A 27 RPIWIMGAM-------VNAIGQIDEFVNLGAN--SIETDVSFDDNANPEYTYHGIPCDCGRNCKKYE------------- 84 (302)
T ss_dssp EEEEEEESC-------CCSHHHHHHHHHTTCS--EEEEEECBCTTSCBCBCCCCSSCCTTCCSCCCC-------------
T ss_pred CceEEEeeh-------hhhHHHHHHHHHcCCC--EEEEEEEECCCCCEEEEECCCCcchhccCCCCc-------------
Confidence 344799997 9999999999999999 99999999999999999998553 3222111
Q ss_pred CCCCccccccCCHHhhccccccccccCCCCCCCCCCcccccHHHHHHhhCCCceEeeccCchhhhh----cCCcHHHHHH
Q 004721 167 VPTPGWFSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKPPGLWLNIQHDAFYAQ----HNLSMRSFVL 242 (733)
Q Consensus 167 ~~~~g~~v~d~T~~eL~~l~~~~~~~~~~~~~~g~~~~iptL~e~l~~~~~~~l~iEiK~~~~~~~----~~~~~~~~v~ 242 (733)
.+.+ .+++|+++.-- ..+.|.. + =+-+++++|.+..... .|.++++.++
T Consensus 85 ------~~~~-~l~~lr~~ttp-----g~~k~~~---~------------l~lv~~DlK~~~l~~~~~~~aG~~la~kLl 137 (302)
T 3rlg_A 85 ------NFND-FLKGLRSATTP-----GNSKYQE---K------------LVLVVFDLKTGSLYDNQANDAGKKLAKNLL 137 (302)
T ss_dssp ------BHHH-HHHHHHHHHST-----TSTTCCT---T------------CCEEEEEECGGGSCGGGHHHHHHHHHHHHH
T ss_pred ------cHHH-HHHHHHHhcCC-----CCCcccc---c------------eEEEEEEcCCCCCCHHHHHHhHHHHHHHHH
Confidence 2333 55555554320 0111111 0 0347889996654432 2567778777
Q ss_pred HHHhhcCC------ceeccCCHHHHHHHHHhcCCC-cccchhhhcCCCccCCCCCcchh---HHHh--hHHHHHhhcccc
Q 004721 243 SVSRSVVV------NYISSPEVNFLRSIAARFRPS-MTKLVFRFLGKSEIEPTTNQTYG---SLLK--NLTFIKTFASGI 310 (733)
Q Consensus 243 ~~l~~~~~------~~i~SF~~~~l~~l~~~~p~~-~~~~~~~l~~~~~~~~~~~~~~~---~~~~--~l~~~~~~a~~i 310 (733)
+.+-..|. +++|+|+...++.++...... +.+... +++.-.+.-..+.... .+.. ++....-+++||
T Consensus 138 ~~~w~~g~~~~ra~vilsi~~~~~~~~l~gf~~~l~~~g~~~-LldkvG~Dfs~n~dl~~i~~~~~~~Gi~~h~wqsDGI 216 (302)
T 3rlg_A 138 QHYWNNGNNGGRAYIVLSIPDLNHYPLIKGFKDQLTKDGHPE-LMDKVGHDFSGNDDIGDVGKAYKKAGITGHIWQSDGI 216 (302)
T ss_dssp HHTSGGGSSCCCCEEEEEESCGGGTHHHHHHHHHHHHTTCGG-GGGGEEEEECSCCCHHHHHHHHHHTTCCSCBEEEEEC
T ss_pred HHHHhcCCCCceeEEEEecCcchHHHHHHHHHHHHhhcCHHH-HhhhcCccccCCCCHHHHHHHHHhcCCcCcEEecCCc
Confidence 77766432 489999987666555432000 112211 2221111111111122 2221 222222346666
Q ss_pred cCCccccccCCCccCCCCChHHHHHHHHc-----C--CeEEEeecCCCCCcccCCCCChHHHHHHHHhcCCcccceEEec
Q 004721 311 LVPKDYIWPVDESLYLLPHTTIVLDAHKE-----R--LEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSD 383 (733)
Q Consensus 311 ~~~~~~i~~~~~~~~~~~~~~~v~~ah~~-----G--l~V~~WTvn~~~~~~~~~~~d~~~~~~~l~~~G~~~VDgIiTD 383 (733)
+++. +. +...++.+.+. | ++|++||||++ ++|++++++| |||||||
T Consensus 217 tnC~--~r----------~~~rl~~ai~~RDs~~~~i~~V~vWTVNd~------------~~m~~l~~~G---VDGIITD 269 (302)
T 3rlg_A 217 TNCL--PR----------GLSRVNAAVANRDSANGFINKVYYWTVDKR------------STTRDALDAG---VDGIMTN 269 (302)
T ss_dssp CTTS--CC----------CSHHHHHHHHHHTSTTCCCSEEEEECCCSH------------HHHHHHHHTT---CSEEEES
T ss_pred ccce--ec----------cHHHHHHHHHhccCCCCceEEEEEEeCCCH------------HHHHHHHHcC---CCEEECC
Confidence 6654 11 12234433333 3 79999999875 8999999999 9999999
Q ss_pred CCCCccccchhc
Q 004721 384 FPLTPSAAVDCF 395 (733)
Q Consensus 384 ~P~~~~~~l~~~ 395 (733)
+|+.++++++..
T Consensus 270 ~Pd~l~~~l~~~ 281 (302)
T 3rlg_A 270 YPDVITDVLNEA 281 (302)
T ss_dssp CHHHHHHHHTSH
T ss_pred CHHHHHHHHHhc
Confidence 999998888654
|
| >1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A | Back alignment and structure |
|---|
Probab=91.61 E-value=0.087 Score=60.57 Aligned_cols=50 Identities=14% Similarity=0.105 Sum_probs=42.7
Q ss_pred EecCCC---CCCCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeeccccc
Q 004721 411 ISKNGA---SGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLI 460 (733)
Q Consensus 411 IaHRG~---~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L~ 460 (733)
-+|.-+ ....-+.|.++|.+|+..||+.||+|+|=-.||.|||+|-.||-
T Consensus 177 SsHNTYL~G~Ql~~~ss~e~y~~aL~~GcRcvElD~wdg~~~ep~v~HG~tlt 229 (624)
T 1djx_A 177 SSHNTYLLEDQLTGPSSTEAYIRALCKGCRCLELDCWDGPNQEPIIYHGYTFT 229 (624)
T ss_dssp EESSTTBSSCSSSCCBCHHHHHHHHHTTCCEEEEEEECCGGGCCEECCTTSCC
T ss_pred cccchhhhcCcccCCcCHHHHHHHHHhCCcEEEEEeecCCCCCeEEecCCccc
Confidence 456542 34567899999999999999999999999999999999998773
|
| >2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B | Back alignment and structure |
|---|
Probab=90.63 E-value=0.13 Score=60.89 Aligned_cols=52 Identities=13% Similarity=0.107 Sum_probs=43.7
Q ss_pred eEEecCCC---CCCCCCchHHHHHHHHHCCCCeeecCceeec--CCeEEEeeccccc
Q 004721 409 LVISKNGA---SGDYPSCTNLAYQKAISDGVDFIDCPVQMSK--DGVPFCLSFINLI 460 (733)
Q Consensus 409 ~iIaHRG~---~~~~PENTl~Af~~A~~~Gad~iE~DV~lTk--Dgv~Vv~HD~~L~ 460 (733)
+--+|.-+ ....-+-|.++|.+|+..||+.||+|++=-. ||.|||+|-.||-
T Consensus 323 I~SSHNTYL~g~Ql~g~ss~e~y~~aL~~GcRcvElD~Wdg~~~~~ep~v~HG~Tlt 379 (799)
T 2zkm_X 323 INSSHNTYLTAGQFSGLSSAEMYRQVLLSGCRCVELDCWKGKPPDEEPIITHGFTMT 379 (799)
T ss_dssp ECBBSSTTBSSCSSSSCBCTHHHHHHHHTTCCEEEEEEECCCTTCCSCEECCTTSSC
T ss_pred EeccccceeecCcccCcccHHHHHHHHHhCCCEEEEEeecCCCCCCCCEEEeCCccc
Confidence 44566553 3456789999999999999999999999987 9999999998863
|
| >3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A | Back alignment and structure |
|---|
Probab=89.58 E-value=0.16 Score=59.75 Aligned_cols=52 Identities=15% Similarity=0.137 Sum_probs=43.8
Q ss_pred eEEecCCC---CCCCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeeccccc
Q 004721 409 LVISKNGA---SGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLI 460 (733)
Q Consensus 409 ~iIaHRG~---~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L~ 460 (733)
+--+|.-+ ....-+-|.++|.+|+..||+.||+|++=-.||.|||+|-.||-
T Consensus 334 I~sshntyL~g~ql~g~ss~~~y~~aL~~gcRcvEld~wdg~~~ePvv~HG~Tlt 388 (816)
T 3qr0_A 334 INSSHNTYLTGHQLTGKSSVEIYRQVLLTGCRCLELDCWDGKDGEPIITHGFTMC 388 (816)
T ss_dssp ECBBSSTTBSSCTTTSCBCSHHHHHHHHTTCCEEEEEEECCTTSSCEECCTTSSC
T ss_pred ecccccchhccccccCcccHHHHHHHHHhCCcEEEEEEecCCCCCceEccCCccc
Confidence 34566553 34567899999999999999999999999999999999998864
|
| >1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A | Back alignment and structure |
|---|
Probab=89.57 E-value=0.22 Score=57.26 Aligned_cols=49 Identities=16% Similarity=0.143 Sum_probs=42.6
Q ss_pred EEeCCC---CCCCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCC
Q 004721 95 VARGGF---SGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKL 145 (733)
Q Consensus 95 iaHRG~---~~~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l 145 (733)
.+|--+ ....-+-|.++|..|+..||. .||+|+|=-.||.|||+|-.||
T Consensus 177 SsHNTYL~G~Ql~~~ss~e~y~~aL~~GcR--cvElD~wdg~~~ep~v~HG~tl 228 (624)
T 1djx_A 177 SSHNTYLLEDQLTGPSSTEAYIRALCKGCR--CLELDCWDGPNQEPIIYHGYTF 228 (624)
T ss_dssp EESSTTBSSCSSSCCBCHHHHHHHHHTTCC--EEEEEEECCGGGCCEECCTTSC
T ss_pred cccchhhhcCcccCCcCHHHHHHHHHhCCc--EEEEEeecCCCCCeEEecCCcc
Confidence 466543 345678999999999999999 9999999999999999999988
|
| >3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=88.74 E-value=6.6 Score=37.59 Aligned_cols=141 Identities=15% Similarity=0.207 Sum_probs=94.5
Q ss_pred ccccCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCCcHHHHHHHHHHHc-CCCCCCCceEEEEeCCHHHHHHHHhc--
Q 004721 522 GKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEALGNA-GYNKQTALKVMIQSTDSSVLMKLREK-- 598 (733)
Q Consensus 522 ~~IptLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~v~~~l~~~-~~~~~~~~~vii~Sfd~~~L~~lk~~-- 598 (733)
..|.+|+++.+.+++..+ .+++.+.... |..-.+.-++.|.+. +.+ -+.|-....++..|+.
T Consensus 38 g~i~~l~~~v~~lk~~~K--~v~Vh~Dli~------Gls~d~~ai~fL~~~~~pd-------GIIsTk~~~i~~Ak~~gL 102 (192)
T 3kts_A 38 THVAQLKALVKYAQAGGK--KVLLHADLVN------GLKNDDYAIDFLCTEICPD-------GIISTRGNAIMKAKQHKM 102 (192)
T ss_dssp EETTTHHHHHHHHHHTTC--EEEEEGGGEE------TCCCSHHHHHHHHHTTCCS-------EEEESCHHHHHHHHHTTC
T ss_pred CcHHHHHHHHHHHHHcCC--eEEEecCchh------ccCCcHHHHHHHHhCCCCC-------EEEeCcHHHHHHHHHCCC
Confidence 578999999999999855 4666666322 111123345666653 333 6778899999999988
Q ss_pred cCceEEEEeecccchhhhHHHHHHHHHHhHhcCCCcccccCCccccccchHHHHHHHH-CCCcEEEEec-CCcccccccc
Q 004721 599 TSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNSAFITSATDIVQRLQS-FKLPVYVETF-SNEFVSQAWD 676 (733)
Q Consensus 599 p~~~~~~l~~~~~~~~~~~~l~~i~~~a~~i~~~~~~i~~~~~~~l~~~~~~v~~~~~-~Gl~v~~wTv-n~~~~~~~~~ 676 (733)
.-++.+|+++.. +++...+......|..-.+.|. ..+++++++++ -+.++.+-+. ++++
T Consensus 103 ~tIqR~FliDS~-------al~~~~~~i~~~~PD~iEiLPG------i~p~iI~~i~~~~~~PiIaGGlI~~~e------ 163 (192)
T 3kts_A 103 LAIQRLFMIDSS-------AYNKGVALIQKVQPDCIELLPG------IIPEQVQKMTQKLHIPVIAGGLIETSE------ 163 (192)
T ss_dssp EEEEEEECCSHH-------HHHHHHHHHHHHCCSEEEEECT------TCHHHHHHHHHHHCCCEEEESSCCSHH------
T ss_pred eEEEEEEEEEcc-------hHHHHHHHHhhcCCCEEEECCc------hhHHHHHHHHHhcCCCEEEECCcCCHH------
Confidence 678888887642 2333333444455544344443 13678887765 6888888864 5554
Q ss_pred cCCChHHHHHHHHhhcCcCEEEeCChHH
Q 004721 677 FFSDPTVEINTYYEGAGIDGVITEFPMT 704 (733)
Q Consensus 677 ~~~d~~~e~~~~l~~~GVdgIiTD~P~~ 704 (733)
++...+ +.|+++|.|=.+..
T Consensus 164 -------dv~~al-~aGA~aVsTs~~~L 183 (192)
T 3kts_A 164 -------QVNQVI-ASGAIAVTTSNKHL 183 (192)
T ss_dssp -------HHHHHH-TTTEEEEEECCGGG
T ss_pred -------HHHHHH-HcCCeEEEeCCHHH
Confidence 788887 99999999987754
|
| >2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B | Back alignment and structure |
|---|
Probab=88.21 E-value=0.31 Score=57.49 Aligned_cols=49 Identities=18% Similarity=0.150 Sum_probs=42.1
Q ss_pred EEeCCC---CCCCCccHHHHHHHHHHcCCCCcEEEeeeeecC--CCeEEEecCCCC
Q 004721 95 VARGGF---SGIFPDSSSIAYSLTLITSAPSVILWCDVQLTK--DEAGICFPDLKL 145 (733)
Q Consensus 95 iaHRG~---~~~~pENTl~af~~A~~~g~d~~~iE~DV~lTk--Dg~lVv~HD~~l 145 (733)
.+|--+ ....-+-|.++|..|+..||. .||+|+|=-. ||.+||+|-.||
T Consensus 325 SSHNTYL~g~Ql~g~ss~e~y~~aL~~GcR--cvElD~Wdg~~~~~ep~v~HG~Tl 378 (799)
T 2zkm_X 325 SSHNTYLTAGQFSGLSSAEMYRQVLLSGCR--CVELDCWKGKPPDEEPIITHGFTM 378 (799)
T ss_dssp BBSSTTBSSCSSSSCBCTHHHHHHHHTTCC--EEEEEEECCCTTCCSCEECCTTSS
T ss_pred ccccceeecCcccCcccHHHHHHHHHhCCC--EEEEEeecCCCCCCCCEEEeCCcc
Confidence 456542 345678999999999999999 9999999988 999999999987
|
| >3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A | Back alignment and structure |
|---|
Probab=87.33 E-value=0.37 Score=56.81 Aligned_cols=50 Identities=20% Similarity=0.139 Sum_probs=42.8
Q ss_pred EEEeCCC---CCCCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCC
Q 004721 94 VVARGGF---SGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKL 145 (733)
Q Consensus 94 viaHRG~---~~~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l 145 (733)
-.+|.-+ ....-+-|.++|..|+..||. .||+|+|=-.||++||+|-.||
T Consensus 335 ~sshntyL~g~ql~g~ss~~~y~~aL~~gcR--cvEld~wdg~~~ePvv~HG~Tl 387 (816)
T 3qr0_A 335 NSSHNTYLTGHQLTGKSSVEIYRQVLLTGCR--CLELDCWDGKDGEPIITHGFTM 387 (816)
T ss_dssp CBBSSTTBSSCTTTSCBCSHHHHHHHHTTCC--EEEEEEECCTTSSCEECCTTSS
T ss_pred cccccchhccccccCcccHHHHHHHHHhCCc--EEEEEEecCCCCCceEccCCcc
Confidence 3456542 345678899999999999999 9999999999999999999987
|
| >3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=85.57 E-value=0.33 Score=57.62 Aligned_cols=52 Identities=15% Similarity=0.121 Sum_probs=42.2
Q ss_pred eEEecCCC---CCCCCCchHHHHHHHHHCCCCeeecCceee--cCCeEEEeeccccc
Q 004721 409 LVISKNGA---SGDYPSCTNLAYQKAISDGVDFIDCPVQMS--KDGVPFCLSFINLI 460 (733)
Q Consensus 409 ~iIaHRG~---~~~~PENTl~Af~~A~~~Gad~iE~DV~lT--kDgv~Vv~HD~~L~ 460 (733)
+--+|.-+ ....-+-|.++|.+|+..||+.||+|++=- .||.|||+|-.+|-
T Consensus 327 I~ssHNtYL~g~Ql~~~ss~~~y~~aL~~gcRcvEld~wdg~~~~~ep~v~hg~t~t 383 (885)
T 3ohm_B 327 INSSHNTYLTAGQLAGTSSVEMYRQALLWGCRCVELDVWKGRPPEEEPFITHGFTMT 383 (885)
T ss_dssp ECCBSSTTBSSCSSEECBCSHHHHHHHHTTCCEEEEEEECCCSSSCCCEECSTTSEE
T ss_pred eeccccceeccccccCcCcHHHHHHHHHhCCCEEEEEeeCCCCCCCCCEEeeCCccc
Confidence 34456553 234567899999999999999999999965 78999999998873
|
| >1vkf_A Glycerol uptake operon antiterminator-related Pro; struc genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: CIT; 1.65A {Thermotoga maritima} SCOP: c.1.29.1 | Back alignment and structure |
|---|
Probab=83.86 E-value=11 Score=35.87 Aligned_cols=139 Identities=12% Similarity=0.139 Sum_probs=89.6
Q ss_pred cccCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCCcHHHHHHHHHHHcCCCCCCCceEEEEeCCHHHHHHHHhc--cC
Q 004721 523 KFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEALGNAGYNKQTALKVMIQSTDSSVLMKLREK--TS 600 (733)
Q Consensus 523 ~IptLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~vii~Sfd~~~L~~lk~~--p~ 600 (733)
.+..|+++.+.+++. +. .+++.+..-. |..-.+.-++.|+..+.. -+.|-....+...|+. ..
T Consensus 41 ~I~~L~~iv~~ik~~-gK-~vivh~DlI~------GLs~d~~ai~fL~~~~pd-------GIIsTk~~~i~~Akk~GL~t 105 (188)
T 1vkf_A 41 DILNLKFHLKILKDR-GK-TVFVDMDFVN------GLGEGEEAILFVKKAGAD-------GIITIKPKNYVVAKKNGIPA 105 (188)
T ss_dssp ETTTHHHHHHHHHHT-TC-EEEEEGGGEE------TCCSSHHHHHHHHHHTCS-------EEEESCHHHHHHHHHTTCCE
T ss_pred cHHHHHHHHHHHHHC-CC-eEEEecCccc------ccCCCHHHHHHHHhcCCC-------EEEcCcHHHHHHHHHcCCEE
Confidence 567899999999988 43 6778777332 111112234555555544 6778889999999987 67
Q ss_pred ceEEEEeecccchhhhHHHHHHHHHHhHhcCCCcccccCCccccccchHHHHHHHHCCCcEEEEec-CCcccccccccCC
Q 004721 601 YELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNSAFITSATDIVQRLQSFKLPVYVETF-SNEFVSQAWDFFS 679 (733)
Q Consensus 601 ~~~~~l~~~~~~~~~~~~l~~i~~~a~~i~~~~~~i~~~~~~~l~~~~~~v~~~~~~Gl~v~~wTv-n~~~~~~~~~~~~ 679 (733)
++.+|++++. +++...+......|..-.+.|. ...+++++.+ .+.++.+-+. ++++
T Consensus 106 IqR~FliDs~-------al~~~~~~I~~~kPD~iEiLPg-----~v~p~~I~~v--~~~PiIaGGlI~t~e--------- 162 (188)
T 1vkf_A 106 VLRFFALDSK-------AVERGIEQIETLGVDVVEVLPG-----AVAPKVARKI--PGRTVIAAGLVETEE--------- 162 (188)
T ss_dssp EEEEECCSHH-------HHHHHHHHHHHHTCSEEEEESG-----GGHHHHHTTS--TTSEEEEESCCCSHH---------
T ss_pred eeEEEEEEeH-------HHhhhhhhccccCCCeEeecCC-----CchHHHHHHh--cCCCEEEECCcCCHH---------
Confidence 8888888651 1222222223334433333332 1136788877 6778888754 5554
Q ss_pred ChHHHHHHHHhhcCcCEEEeCChHHH
Q 004721 680 DPTVEINTYYEGAGIDGVITEFPMTA 705 (733)
Q Consensus 680 d~~~e~~~~l~~~GVdgIiTD~P~~~ 705 (733)
++.+ + +.|+++|.|=.++..
T Consensus 163 ----dv~~-l-~aGA~aIsTs~~~LW 182 (188)
T 1vkf_A 163 ----EARE-I-LKHVSAISTSSRILW 182 (188)
T ss_dssp ----HHHH-H-TTTSSEEEECCHHHH
T ss_pred ----HHHH-H-HCCCeEEEeCCHHHh
Confidence 7777 7 999999999888753
|
| >3h4x_A Phosphatidylinositol-specific phospholipase C1; PI-PLC, Ca2+-dependent, catalytic TIM barrel, disulfide-LINK loop, hydrolase; 1.23A {Streptomyces antibioticus} PDB: 3h4w_A | Back alignment and structure |
|---|
Probab=83.01 E-value=1.3 Score=45.74 Aligned_cols=49 Identities=10% Similarity=-0.044 Sum_probs=36.4
Q ss_pred ceEEecCCCCCCCCCchHHHHHHHHHCCCCeeecCceeec-CCeEEEeeccccc
Q 004721 408 LLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSK-DGVPFCLSFINLI 460 (733)
Q Consensus 408 ~~iIaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTk-Dgv~Vv~HD~~L~ 460 (733)
.++-+|--+.... ...+.+|++.|+.+||+||+... .|.+-|+|...+.
T Consensus 32 T~~g~HNSY~~g~----~~~i~~qLd~GVR~LELDIw~n~~~g~~~V~Hg~~l~ 81 (339)
T 3h4x_A 32 TSVGVHNAYEKEK----YRYFADALDSGAALLELDLWSNALGRSWRVSHSNPLG 81 (339)
T ss_dssp EEEEETTTTCTTT----CSSHHHHHTTCCSEEEEEEESSSSSSSCEECSSSCSS
T ss_pred eEeeccccccccC----cccHHHHHHhCCCEEEEEeecCCCCCCeEEeCCCccc
Confidence 4566776543211 35788999999999999999874 5579999987654
|
| >3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=81.29 E-value=0.76 Score=54.54 Aligned_cols=49 Identities=14% Similarity=0.112 Sum_probs=40.7
Q ss_pred EEeCCC---CCCCCccHHHHHHHHHHcCCCCcEEEeeeeec--CCCeEEEecCCCC
Q 004721 95 VARGGF---SGIFPDSSSIAYSLTLITSAPSVILWCDVQLT--KDEAGICFPDLKL 145 (733)
Q Consensus 95 iaHRG~---~~~~pENTl~af~~A~~~g~d~~~iE~DV~lT--kDg~lVv~HD~~l 145 (733)
.+|.-+ ....-+-|.++|..|+..||. .||+|+|=- .||++||+|-.||
T Consensus 329 ssHNtYL~g~Ql~~~ss~~~y~~aL~~gcR--cvEld~wdg~~~~~ep~v~hg~t~ 382 (885)
T 3ohm_B 329 SSHNTYLTAGQLAGTSSVEMYRQALLWGCR--CVELDVWKGRPPEEEPFITHGFTM 382 (885)
T ss_dssp CBSSTTBSSCSSEECBCSHHHHHHHHTTCC--EEEEEEECCCSSSCCCEECSTTSE
T ss_pred ccccceeccccccCcCcHHHHHHHHHhCCC--EEEEEeeCCCCCCCCCEEeeCCcc
Confidence 455543 234567899999999999999 999999966 7899999999987
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 733 | ||||
| d1ydya1 | 328 | c.1.18.3 (A:29-356) Glycerophosphodiester phosphod | 4e-30 | |
| d1ydya1 | 328 | c.1.18.3 (A:29-356) Glycerophosphodiester phosphod | 6e-23 | |
| d1zcca1 | 240 | c.1.18.3 (A:1-240) Glycerophosphodiester phosphodi | 8e-11 | |
| d1zcca1 | 240 | c.1.18.3 (A:1-240) Glycerophosphodiester phosphodi | 8e-04 | |
| d1o1za_ | 226 | c.1.18.3 (A:) Hypothetical protein TM1621 {Thermot | 6e-10 | |
| d1vd6a1 | 217 | c.1.18.3 (A:8-224) Putative glycerophosphodiester | 2e-09 | |
| d1vd6a1 | 217 | c.1.18.3 (A:8-224) Putative glycerophosphodiester | 0.002 |
| >d1ydya1 c.1.18.3 (A:29-356) Glycerophosphodiester phosphodiesterase GlpQ {Escherichia coli [TaxId: 562]} Length = 328 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: PLC-like phosphodiesterases family: Glycerophosphoryl diester phosphodiesterase domain: Glycerophosphodiester phosphodiesterase GlpQ species: Escherichia coli [TaxId: 562]
Score = 119 bits (298), Expect = 4e-30
Identities = 62/331 (18%), Positives = 115/331 (34%), Gaps = 35/331 (10%)
Query: 409 LVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQS 468
+VI+ GASG P T A A + G D+++ + M+KD L L T+ A
Sbjct: 4 IVIAHRGASGYLPEHTLPAKAMAYAQGADYLEQDLVMTKDDNLVVLHDHYLDRVTDVAD- 62
Query: 469 KFNSITTTIPEIMAGSGIFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLS 528
+F A + + R P K+ +
Sbjct: 63 RFPDRARKDGRYYAIDFTLDEIKSLK-FTEGFDIENGKKVQTYPGRFPMGKSDFRVHTFE 121
Query: 529 DFLEMAKNANSLSGVLISIENAV---YLAEKQGMSVTNSVMEALGNAGYNKQTALKVMIQ 585
+ +E + N +G I I + + ++G + +E L GY + KV +Q
Sbjct: 122 EEIEFVQGLNHSTGKNIGIYPEIKAPWFHHQEGKDIAAKTLEVLKKYGYTGKDD-KVYLQ 180
Query: 586 STDSSVLMKLREK------TSYELVYKVKENIRDALNQTIED------------------ 621
D+ L +++ + LV + + Q D
Sbjct: 181 CFDADELKRIKNELEPKMGMELNLVQLIAYTDWNETQQKQPDGSWVNYNYDWMFKPGAMK 240
Query: 622 -IKKFADSVVLSKESVYPLNSAFITSAT-DIVQRLQSFKLPVYVETFSNEFVSQAWDFFS 679
+ ++AD + + S +VQ Q KL V+ T ++ + ++
Sbjct: 241 QVAEYADGIGPDYHMLIEETSQPGNIKLTGMVQDAQQNKLVVHPYTVRSD---KLPEYTP 297
Query: 680 DPTVEINTYYEGAGIDGVITEFPMTAARYRS 710
D + Y AG++G+ T+FP A ++ +
Sbjct: 298 DVNQLYDALYNKAGVNGLFTDFPDKAVKFLN 328
|
| >d1ydya1 c.1.18.3 (A:29-356) Glycerophosphodiester phosphodiesterase GlpQ {Escherichia coli [TaxId: 562]} Length = 328 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: PLC-like phosphodiesterases family: Glycerophosphoryl diester phosphodiesterase domain: Glycerophosphodiester phosphodiesterase GlpQ species: Escherichia coli [TaxId: 562]
Score = 98.3 bits (243), Expect = 6e-23
Identities = 59/326 (18%), Positives = 109/326 (33%), Gaps = 36/326 (11%)
Query: 90 DPPFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNAS 149
+ V+A G SG P+ + A ++ A L D+ +TKD+ + D LD +
Sbjct: 1 NEKIVIAHRGASGYLPEHTLPAKAMAYAQGAD--YLEQDLVMTKDDNLVVLHDHYLDRVT 58
Query: 150 NIAQIFKTQQK---NYLVNGVPTPGWFSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQIL 206
++A F + + Y S+ +T Y + F++
Sbjct: 59 DVADRFPDRARKDGRYYAIDFTLDEIKSLKFTEGFDIENGKKVQTYPGRFPMGKSDFRVH 118
Query: 207 TVQDMARQI--------KPPGLWLNIQHDAFYAQHNLSMRSFVLSVSRSVVVN------Y 252
T ++ + K G++ I+ F+ Q + + L V + Y
Sbjct: 119 TFEEEIEFVQGLNHSTGKNIGIYPEIKAPWFHHQEGKDIAAKTLEVLKKYGYTGKDDKVY 178
Query: 253 ISSPEVNFLRSIAARFRP---SMTKLVFRFLGKSEIEPTTNQTYGSLL----------KN 299
+ + + L+ I P LV E Q GS +
Sbjct: 179 LQCFDADELKRIKNELEPKMGMELNLVQLIAYTDWNETQQKQPDGSWVNYNYDWMFKPGA 238
Query: 300 LTFIKTFASGILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYS 359
+ + +A GI + + T +V DA + +L V +D Y+
Sbjct: 239 MKQVAEYADGIGPDYHMLIEETSQPGNIKLTGMVQDAQQNKLVVHPYTVRSDKL--PEYT 296
Query: 360 YDPLTEYLSFIDNGDFSVDGVLSDFP 385
D Y + + V+G+ +DFP
Sbjct: 297 PDVNQLYDALYN--KAGVNGLFTDFP 320
|
| >d1zcca1 c.1.18.3 (A:1-240) Glycerophosphodiester phosphodiesterase UgpQ {Agrobacterium tumefaciens [TaxId: 358]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: PLC-like phosphodiesterases family: Glycerophosphoryl diester phosphodiesterase domain: Glycerophosphodiester phosphodiesterase UgpQ species: Agrobacterium tumefaciens [TaxId: 358]
Score = 60.4 bits (145), Expect = 8e-11
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 410 VISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFC 453
++S GA+ P T A A+ G D+I+ V+ S DGV +
Sbjct: 4 IVSHRGANRFAPENTFAAADLALQQGADYIELDVRESADGVLYV 47
|
| >d1zcca1 c.1.18.3 (A:1-240) Glycerophosphodiester phosphodiesterase UgpQ {Agrobacterium tumefaciens [TaxId: 358]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: PLC-like phosphodiesterases family: Glycerophosphoryl diester phosphodiesterase domain: Glycerophosphodiester phosphodiesterase UgpQ species: Agrobacterium tumefaciens [TaxId: 358]
Score = 39.6 bits (91), Expect = 8e-04
Identities = 12/105 (11%), Positives = 33/105 (31%), Gaps = 14/105 (13%)
Query: 608 KENIRDALNQTIEDIKKFADSVVLSKESVYPLNSAFITSATDIVQRLQSFKLPVYVETFS 667
T++ K + + S+ + A + I++ + L + V
Sbjct: 145 SIAPEFRRMMTLDIAKSPSLVGAVHHASIIEITPAQMRRP-GIIEASRKAGLEIMVYYGG 203
Query: 668 NEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPMTAARYRSKL 712
++ + ++ + +D + + P A RS +
Sbjct: 204 DD-------------MAVHREIATSDVDYINLDRPDLFAAVRSGM 235
|
| >d1o1za_ c.1.18.3 (A:) Hypothetical protein TM1621 {Thermotoga maritima [TaxId: 2336]} Length = 226 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: PLC-like phosphodiesterases family: Glycerophosphoryl diester phosphodiesterase domain: Hypothetical protein TM1621 species: Thermotoga maritima [TaxId: 2336]
Score = 57.8 bits (138), Expect = 6e-10
Identities = 15/45 (33%), Positives = 23/45 (51%)
Query: 409 LVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFC 453
+V+ G S Y T A+ KAI G + ++ V++SKDG
Sbjct: 6 IVLGHRGYSAKYLENTLEAFMKAIEAGANGVELDVRLSKDGKVVV 50
|
| >d1vd6a1 c.1.18.3 (A:8-224) Putative glycerophosphodiester phosphodiesterase TTHB141 {Thermus thermophilus [TaxId: 274]} Length = 217 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: PLC-like phosphodiesterases family: Glycerophosphoryl diester phosphodiesterase domain: Putative glycerophosphodiester phosphodiesterase TTHB141 species: Thermus thermophilus [TaxId: 274]
Score = 56.2 bits (134), Expect = 2e-09
Identities = 11/45 (24%), Positives = 21/45 (46%)
Query: 409 LVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFC 453
L + GA T +++ A+ G+D ++ V ++DGV
Sbjct: 2 LRLGHRGAPLKAKENTLESFRLALEAGLDGVELDVWPTRDGVFAV 46
|
| >d1vd6a1 c.1.18.3 (A:8-224) Putative glycerophosphodiester phosphodiesterase TTHB141 {Thermus thermophilus [TaxId: 274]} Length = 217 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: PLC-like phosphodiesterases family: Glycerophosphoryl diester phosphodiesterase domain: Putative glycerophosphodiester phosphodiesterase TTHB141 species: Thermus thermophilus [TaxId: 274]
Score = 38.1 bits (87), Expect = 0.002
Identities = 9/55 (16%), Positives = 17/55 (30%), Gaps = 2/55 (3%)
Query: 92 PFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLD 146
P + G +++ ++ L L + DV T+D D
Sbjct: 1 PLRLGHRGAPLKAKENTLESFRLALEAGLD--GVELDVWPTRDGVFAVRHDPDTP 53
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 733 | |||
| d1zcca1 | 240 | Glycerophosphodiester phosphodiesterase UgpQ {Agro | 100.0 | |
| d1ydya1 | 328 | Glycerophosphodiester phosphodiesterase GlpQ {Esch | 100.0 | |
| d1ydya1 | 328 | Glycerophosphodiester phosphodiesterase GlpQ {Esch | 100.0 | |
| d1zcca1 | 240 | Glycerophosphodiester phosphodiesterase UgpQ {Agro | 100.0 | |
| d1o1za_ | 226 | Hypothetical protein TM1621 {Thermotoga maritima [ | 100.0 | |
| d1o1za_ | 226 | Hypothetical protein TM1621 {Thermotoga maritima [ | 100.0 | |
| d1vd6a1 | 217 | Putative glycerophosphodiester phosphodiesterase T | 100.0 | |
| d1vd6a1 | 217 | Putative glycerophosphodiester phosphodiesterase T | 100.0 | |
| d1qasa3 | 327 | Phospholipase C isozyme D1 (PLC-D1) {Rat (Rattus n | 95.28 | |
| d2zkmx4 | 349 | Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI | 94.59 | |
| d1qasa3 | 327 | Phospholipase C isozyme D1 (PLC-D1) {Rat (Rattus n | 93.87 | |
| d2zkmx4 | 349 | Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI | 91.42 |
| >d1zcca1 c.1.18.3 (A:1-240) Glycerophosphodiester phosphodiesterase UgpQ {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: PLC-like phosphodiesterases family: Glycerophosphoryl diester phosphodiesterase domain: Glycerophosphodiester phosphodiesterase UgpQ species: Agrobacterium tumefaciens [TaxId: 358]
Probab=100.00 E-value=4.9e-45 Score=373.24 Aligned_cols=232 Identities=19% Similarity=0.194 Sum_probs=188.9
Q ss_pred eEEecCCCCCCCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeeccccccccccCCCcCCCcccccccccccCcccc
Q 004721 409 LVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIFS 488 (733)
Q Consensus 409 ~iIaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L~rtt~v~~~~~~~r~~~~~~~~~~~g~~i 488 (733)
.||||||+++.+||||++||+.|++.|||+||+|||+||||++||+||.+++|+|| ++| .|
T Consensus 3 ~iiaHRG~~~~~pENT~~a~~~A~~~G~~~iE~Dv~~TkDg~~Vv~HD~~l~r~t~------------------~~~-~v 63 (240)
T d1zcca1 3 KIVSHRGANRFAPENTFAAADLALQQGADYIELDVRESADGVLYVIHDETLDRTTN------------------GTG-PV 63 (240)
T ss_dssp EEEETTTTTTTSCSSSHHHHHHHHHTTCSEEEEEEEECTTCCEEECSSSBTTTTSS------------------CCS-BS
T ss_pred EEEECCCCCCCCCccHHHHHHHHHHcCCCEEEEEEEEecCCCEEEecccccccccc------------------ccc-cH
Confidence 58999999999999999999999999999999999999999999999999999999 777 89
Q ss_pred cccCHHHHhccCccccCCCccccccCCcCCCCCccccCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCCcHHHHHHHH
Q 004721 489 FSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEA 568 (733)
Q Consensus 489 ~d~T~~EL~~L~~~~~~~~~~~~~~~~~~~~g~~~IptLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~v~~~ 568 (733)
.++||+||++|+++.+. +..+. +++||||+|+|+.+++. .+++||+|.+. .+.+.++
T Consensus 64 ~~~t~~el~~l~~~~~~---------~~~~~-~~~IptL~evl~~~~~~---~~l~iEiK~~~----------~~~v~~l 120 (240)
T d1zcca1 64 GHMLSSEIDTLDAGGWF---------DDRFK-GAIVPRLDAYLEHLRGR---AGVYIELKYCD----------PAKVAAL 120 (240)
T ss_dssp TTSCHHHHTTSCSSTTT---------CGGGT-TCCCCBHHHHHHHHTTT---CEEEEEEEESC----------HHHHHHH
T ss_pred HHhhHHHHHHhhccCcC---------ccccC-CCcCChHHHhhhccccc---ceeEEEEccCc----------chhhhHH
Confidence 99999999999987553 23455 48999999999999876 48999999753 2467889
Q ss_pred HHHcCCCCCCCceEEEEeCCHHHHHHHHhc-cCceEEEEeecccchhhhHHHHHHHHHHhHhcCCCcccccCCccccccc
Q 004721 569 LGNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNSAFITSA 647 (733)
Q Consensus 569 l~~~~~~~~~~~~vii~Sfd~~~L~~lk~~-p~~~~~~l~~~~~~~~~~~~l~~i~~~a~~i~~~~~~i~~~~~~~l~~~ 647 (733)
++++++. ++|+++||+++.++.++++ |+++++++++.... .........+. .+... .+...+
T Consensus 121 ~~~~~~~----~~v~~~Sf~~~~l~~~~~~~P~~~~~~~~~~~~~----~~~~~~~~~~~-------~~~~~--~~~~~~ 183 (240)
T d1zcca1 121 VRHLGMV----RDTFYFSFSEEMRQGLQSIAPEFRRMMTLDIAKS----PSLVGAVHHAS-------IIEIT--PAQMRR 183 (240)
T ss_dssp HHHHTCS----TTEEEECSCHHHHHHHHHHCTTSEEEEEHHHHSS----THHHHHTTCCS-------EEEEC--HHHHHS
T ss_pred HHHHHhh----cccccccccHHHHHHHHHhhhccceEEeeccccc----chhHHHHhccc-------ccccc--hhhhCC
Confidence 9999988 7999999999999999999 99999998753211 11111111111 11110 112346
Q ss_pred hHHHHHHHHCCCcEEEEecCCcccccccccCCChHHHHHHHHhhcCcCEEEeCChHHHHHHHHhh
Q 004721 648 TDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPMTAARYRSKL 712 (733)
Q Consensus 648 ~~~v~~~~~~Gl~v~~wTvn~~~~~~~~~~~~d~~~e~~~~l~~~GVdgIiTD~P~~~~~~l~~~ 712 (733)
+++++.+|++|++|++||+|++. ++.+.+.++|||||+||+|+.+.+++++.
T Consensus 184 ~~~v~~~~~~Gl~v~~wTvnd~~-------------~~~~~l~~~gVdgI~TD~P~l~~~vr~~~ 235 (240)
T d1zcca1 184 PGIIEASRKAGLEIMVYYGGDDM-------------AVHREIATSDVDYINLDRPDLFAAVRSGM 235 (240)
T ss_dssp HHHHHHHHHHTCEEEEECCCCCH-------------HHHHHHHHSSCSEEEESCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCEEEEEccCCHH-------------HHHHHHHHcCCCEEEeCcHHHHHHHHHHH
Confidence 88999999999999999999874 55444349999999999999999987764
|
| >d1ydya1 c.1.18.3 (A:29-356) Glycerophosphodiester phosphodiesterase GlpQ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: PLC-like phosphodiesterases family: Glycerophosphoryl diester phosphodiesterase domain: Glycerophosphodiester phosphodiesterase GlpQ species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.5e-43 Score=377.77 Aligned_cols=291 Identities=21% Similarity=0.254 Sum_probs=218.0
Q ss_pred cceEEecCCCCCCCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeeccccccccccCCCcCCCcccccccccccCcc
Q 004721 407 NLLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGI 486 (733)
Q Consensus 407 ~~~iIaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L~rtt~v~~~~~~~r~~~~~~~~~~~g~ 486 (733)
+|+||||||+++.+||||++||++|++.|||+||||||+||||++||+||.+|+|+||++... .. .....+.|
T Consensus 2 ~~liIaHRG~~~~~PENTl~af~~A~~~gad~iE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~-~~-----~~~~~~~~- 74 (328)
T d1ydya1 2 EKIVIAHRGASGYLPEHTLPAKAMAYAQGADYLEQDLVMTKDDNLVVLHDHYLDRVTDVADRF-PD-----RARKDGRY- 74 (328)
T ss_dssp CCEEEETTTTTTTSSTTCHHHHHHHHHTTCSEEEEEEEECTTSCEEECSSSBCTTTBSHHHHS-TT-----CCCTTSCC-
T ss_pred CCEEEeCCCCCCCCCccHHHHHHHHHHcCCCEEEEeeeEccCCcEEEECCchhhcccCCCCCc-cc-----ccccCCCc-
Confidence 589999999999999999999999999999999999999999999999999999999965411 11 11112456
Q ss_pred cccccCHHHHhccCccccCCCc-----cccccCCcCCCCCccccCHHHHHHHHHhc-----CCCceEEEEecchhHHHhh
Q 004721 487 FSFSLIWDEIQTLIPQISNPYF-----KFKLFRNPKNKNAGKFMKLSDFLEMAKNA-----NSLSGVLISIENAVYLAEK 556 (733)
Q Consensus 487 ~i~d~T~~EL~~L~~~~~~~~~-----~~~~~~~~~~~g~~~IptLeEvL~~~~~~-----~~~~~l~iEiK~~~~~~~~ 556 (733)
.|.++|++||++|+++.+.... ..+..+.+...++++||||+|+++.+++. .+ +.+++|||.+....+
T Consensus 75 ~v~~~t~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iptL~~~~~~~~~~~~~~~~~-~~~~iEiK~~~~~~~- 152 (328)
T d1ydya1 75 YAIDFTLDEIKSLKFTEGFDIENGKKVQTYPGRFPMGKSDFRVHTFEEEIEFVQGLNHSTGKN-IGIYPEIKAPWFHHQ- 152 (328)
T ss_dssp BGGGSCHHHHHHSCBCSCEEEETTEEEESSTTSSCTTCSCCCCCBHHHHHHHHHHHHHHHSCC-CEEEEEECCHHHHHH-
T ss_pred eeeecchhhhhccccccccccccccccccccccccccCCCcccCcHHHHHHHHHHHhhhcCCC-ceeeeccCCcchhhh-
Confidence 7999999999999987542110 11112223334468999999999999752 12 389999998876553
Q ss_pred cCCcHHHHHHHHHHHcCCCCCCCceEEEEeCCHHHHHHHHhc--c----CceEEEEeecc------------------cc
Q 004721 557 QGMSVTNSVMEALGNAGYNKQTALKVMIQSTDSSVLMKLREK--T----SYELVYKVKEN------------------IR 612 (733)
Q Consensus 557 ~~~~~~~~v~~~l~~~~~~~~~~~~vii~Sfd~~~L~~lk~~--p----~~~~~~l~~~~------------------~~ 612 (733)
.+..+++.+..++++++.... .++|+++||+++.|+.++.. | .+++..++... +.
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~-~~~v~~~SF~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (328)
T d1ydya1 153 EGKDIAAKTLEVLKKYGYTGK-DDKVYLQCFDADELKRIKNELEPKMGMELNLVQLIAYTDWNETQQKQPDGSWVNYNYD 231 (328)
T ss_dssp TTCCHHHHHHHHHHHTTCCST-TSSBEEEESCHHHHHHHHHTHHHHHTCCCEEEEEECCGGGCCCEEECTTSCEEECCCG
T ss_pred cchhhHHHHHHHHHHhcccCC-CceEEEEecCHHHHHHHHHHcCcccccccceeeeecccccchhccccccccccccchh
Confidence 556788899999998876532 25899999999999999854 3 34454444321 00
Q ss_pred -hhhhHHHHHHHHHHhHhcCCCcccccCC-ccccccchHHHHHHHHCCCcEEEEecCCcccccccccCCChHHHHHHHHh
Q 004721 613 -DALNQTIEDIKKFADSVVLSKESVYPLN-SAFITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYE 690 (733)
Q Consensus 613 -~~~~~~l~~i~~~a~~i~~~~~~i~~~~-~~~l~~~~~~v~~~~~~Gl~v~~wTvn~~~~~~~~~~~~d~~~e~~~~l~ 690 (733)
...+..+..+..+++++++....+.+.. .......+.+|+.+|++|+.|++||||++. ...+..|...++...+.
T Consensus 232 ~~~~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~gl~v~~wTvn~~~---~~~~~~d~~~~~~~~~~ 308 (328)
T d1ydya1 232 WMFKPGAMKQVAEYADGIGPDYHMLIEETSQPGNIKLTGMVQDAQQNKLVVHPYTVRSDK---LPEYTPDVNQLYDALYN 308 (328)
T ss_dssp GGGSTTHHHHHTTTCSEEEEBGGGTBCTTCBTTBCCBCSHHHHHHHTTCEECCBCBCTTS---CCTTCSSHHHHHHHHHT
T ss_pred hhcChhhHHHHHhhCCeeecchhhcccccccccccCCHHHHHHHHHCCCEEEEEccCChH---HhhhccCHHHHHHHHHH
Confidence 1233456667777777776665554432 233455788999999999999999999985 34667788777776666
Q ss_pred hcCcCEEEeCChHHHHHHHH
Q 004721 691 GAGIDGVITEFPMTAARYRS 710 (733)
Q Consensus 691 ~~GVdgIiTD~P~~~~~~l~ 710 (733)
++||||||||+|+++++++.
T Consensus 309 ~~GVDgIiTD~P~~~~~~l~ 328 (328)
T d1ydya1 309 KAGVNGLFTDFPDKAVKFLN 328 (328)
T ss_dssp TSCCSEEEESCHHHHHHHHC
T ss_pred HcCCcEEEEcCHHHHHHHhC
Confidence 89999999999999999873
|
| >d1ydya1 c.1.18.3 (A:29-356) Glycerophosphodiester phosphodiesterase GlpQ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: PLC-like phosphodiesterases family: Glycerophosphoryl diester phosphodiesterase domain: Glycerophosphodiester phosphodiesterase GlpQ species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.6e-44 Score=385.39 Aligned_cols=287 Identities=21% Similarity=0.325 Sum_probs=212.7
Q ss_pred CCCEEEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCCccccCccccccccccccccCCCCC
Q 004721 90 DPPFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPT 169 (733)
Q Consensus 90 ~~~~viaHRG~~~~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l~rtt~~~~~~~~~~~~~~~~g~~~ 169 (733)
++|+||||||+++.+||||++||+.|++.||| +||+|||+||||++||+||.+|+|+|+..+.+...... +|
T Consensus 1 ~~~liIaHRG~~~~~PENTl~af~~A~~~gad--~iE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~---~~--- 72 (328)
T d1ydya1 1 NEKIVIAHRGASGYLPEHTLPAKAMAYAQGAD--YLEQDLVMTKDDNLVVLHDHYLDRVTDVADRFPDRARK---DG--- 72 (328)
T ss_dssp CCCEEEETTTTTTTSSTTCHHHHHHHHHTTCS--EEEEEEEECTTSCEEECSSSBCTTTBSHHHHSTTCCCT---TS---
T ss_pred CCCEEEeCCCCCCCCCccHHHHHHHHHHcCCC--EEEEeeeEccCCcEEEECCchhhcccCCCCCccccccc---CC---
Confidence 36899999999999999999999999999999 99999999999999999999999999987744433221 11
Q ss_pred CccccccCCHHhhccccccccccC--------C---CCCCCCCCcccccHHHHHHhhC--------CCceEeeccCchhh
Q 004721 170 PGWFSIDYTLNDLSNIILNQGVYS--------R---TDKFDGNGFQILTVQDMARQIK--------PPGLWLNIQHDAFY 230 (733)
Q Consensus 170 ~g~~v~d~T~~eL~~l~~~~~~~~--------~---~~~~~g~~~~iptL~e~l~~~~--------~~~l~iEiK~~~~~ 230 (733)
. +.|.++||+||++|+++.++.. + ...+.+ +++||||+|+++.++ +..+++|+|.+...
T Consensus 73 ~-~~v~~~t~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~iptL~~~~~~~~~~~~~~~~~~~~~iEiK~~~~~ 150 (328)
T d1ydya1 73 R-YYAIDFTLDEIKSLKFTEGFDIENGKKVQTYPGRFPMGKS-DFRVHTFEEEIEFVQGLNHSTGKNIGIYPEIKAPWFH 150 (328)
T ss_dssp C-CBGGGSCHHHHHHSCBCSCEEEETTEEEESSTTSSCTTCS-CCCCCBHHHHHHHHHHHHHHHSCCCEEEEEECCHHHH
T ss_pred C-ceeeecchhhhhccccccccccccccccccccccccccCC-CcccCcHHHHHHHHHHHhhhcCCCceeeeccCCcchh
Confidence 2 3799999999999999876531 1 111222 589999999999884 47899999998877
Q ss_pred hhcCCcHHHHHHHHHhhcCC------ceeccCCHHHHHHHHHhcCC-C--cccchhhhcCCCcc---------CCCCCcc
Q 004721 231 AQHNLSMRSFVLSVSRSVVV------NYISSPEVNFLRSIAARFRP-S--MTKLVFRFLGKSEI---------EPTTNQT 292 (733)
Q Consensus 231 ~~~~~~~~~~v~~~l~~~~~------~~i~SF~~~~l~~l~~~~p~-~--~~~~~~~l~~~~~~---------~~~~~~~ 292 (733)
.+.+...++.+..++++++. ++++||+++.|+++++..++ . ..+++. +...... .......
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~SF~~~~l~~~~~~~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 229 (328)
T d1ydya1 151 HQEGKDIAAKTLEVLKKYGYTGKDDKVYLQCFDADELKRIKNELEPKMGMELNLVQ-LIAYTDWNETQQKQPDGSWVNYN 229 (328)
T ss_dssp HHTTCCHHHHHHHHHHHTTCCSTTSSBEEEESCHHHHHHHHHTHHHHHTCCCEEEE-EECCGGGCCCEEECTTSCEEECC
T ss_pred hhcchhhHHHHHHHHHHhcccCCCceEEEEecCHHHHHHHHHHcCcccccccceee-eecccccchhccccccccccccc
Confidence 77777888899998887653 58999999999999865321 0 112221 1111000 0001122
Q ss_pred hhHHHh--hHHHHHhhcccccCCccccccCCCccCCCCChHHHHHHHHcCCeEEEeecCCCCCcccCCCCChHHHHHH-H
Q 004721 293 YGSLLK--NLTFIKTFASGILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLS-F 369 (733)
Q Consensus 293 ~~~~~~--~l~~~~~~a~~i~~~~~~i~~~~~~~~~~~~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~~~~~-l 369 (733)
|..+.. .+..+..++.++++.+..+.+.........++.+|+.||++|++|++||||++..+ .+..|...++.. +
T Consensus 230 ~~~~~~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~gl~v~~wTvn~~~~~--~~~~d~~~~~~~~~ 307 (328)
T d1ydya1 230 YDWMFKPGAMKQVAEYADGIGPDYHMLIEETSQPGNIKLTGMVQDAQQNKLVVHPYTVRSDKLP--EYTPDVNQLYDALY 307 (328)
T ss_dssp CGGGGSTTHHHHHTTTCSEEEEBGGGTBCTTCBTTBCCBCSHHHHHHHTTCEECCBCBCTTSCC--TTCSSHHHHHHHHH
T ss_pred hhhhcChhhHHHHHhhCCeeecchhhcccccccccccCCHHHHHHHHHCCCEEEEEccCChHHh--hhccCHHHHHHHHH
Confidence 333332 56777778888888887776665555556677899999999999999999987432 233344444443 5
Q ss_pred HhcCCcccceEEecCCCCccccc
Q 004721 370 IDNGDFSVDGVLSDFPLTPSAAV 392 (733)
Q Consensus 370 ~~~G~~~VDgIiTD~P~~~~~~l 392 (733)
.++| |||||||+|+++++++
T Consensus 308 ~~~G---VDgIiTD~P~~~~~~l 327 (328)
T d1ydya1 308 NKAG---VNGLFTDFPDKAVKFL 327 (328)
T ss_dssp TTSC---CSEEEESCHHHHHHHH
T ss_pred HHcC---CcEEEEcCHHHHHHHh
Confidence 5678 9999999999988775
|
| >d1zcca1 c.1.18.3 (A:1-240) Glycerophosphodiester phosphodiesterase UgpQ {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: PLC-like phosphodiesterases family: Glycerophosphoryl diester phosphodiesterase domain: Glycerophosphodiester phosphodiesterase UgpQ species: Agrobacterium tumefaciens [TaxId: 358]
Probab=100.00 E-value=2.4e-44 Score=368.16 Aligned_cols=230 Identities=16% Similarity=0.132 Sum_probs=183.3
Q ss_pred EEEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCCccccCccccccccccccccCCCCCCcc
Q 004721 93 FVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPGW 172 (733)
Q Consensus 93 ~viaHRG~~~~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l~rtt~~~~~~~~~~~~~~~~g~~~~g~ 172 (733)
.||||||+++.+||||++||+.|++.|+| +||+|||+||||++||+||.+++|+||+.+
T Consensus 3 ~iiaHRG~~~~~pENT~~a~~~A~~~G~~--~iE~Dv~~TkDg~~Vv~HD~~l~r~t~~~~------------------- 61 (240)
T d1zcca1 3 KIVSHRGANRFAPENTFAAADLALQQGAD--YIELDVRESADGVLYVIHDETLDRTTNGTG------------------- 61 (240)
T ss_dssp EEEETTTTTTTSCSSSHHHHHHHHHTTCS--EEEEEEEECTTCCEEECSSSBTTTTSSCCS-------------------
T ss_pred EEEECCCCCCCCCccHHHHHHHHHHcCCC--EEEEEEEEecCCCEEEeccccccccccccc-------------------
Confidence 59999999999999999999999999999 999999999999999999999999999876
Q ss_pred ccccCCHHhhccccccccccCCCCCCCCCCcccccHHHHHHhhC-CCceEeeccCchhhhhcCCcHHHHHHHHHhhcCC-
Q 004721 173 FSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIK-PPGLWLNIQHDAFYAQHNLSMRSFVLSVSRSVVV- 250 (733)
Q Consensus 173 ~v~d~T~~eL~~l~~~~~~~~~~~~~~g~~~~iptL~e~l~~~~-~~~l~iEiK~~~~~~~~~~~~~~~v~~~l~~~~~- 250 (733)
.|.++||+||++|+++.++ +..|.+ ++||||+|+|+.++ +.+++||+|.+. ++.+.+++++++.
T Consensus 62 ~v~~~t~~el~~l~~~~~~---~~~~~~--~~IptL~evl~~~~~~~~l~iEiK~~~---------~~~v~~l~~~~~~~ 127 (240)
T d1zcca1 62 PVGHMLSSEIDTLDAGGWF---DDRFKG--AIVPRLDAYLEHLRGRAGVYIELKYCD---------PAKVAALVRHLGMV 127 (240)
T ss_dssp BSTTSCHHHHTTSCSSTTT---CGGGTT--CCCCBHHHHHHHHTTTCEEEEEEEESC---------HHHHHHHHHHHTCS
T ss_pred cHHHhhHHHHHHhhccCcC---ccccCC--CcCChHHHhhhcccccceeEEEEccCc---------chhhhHHHHHHHhh
Confidence 7999999999999998865 344555 89999999999997 478999999643 2456777777765
Q ss_pred --ceeccCCHHHHHHHHHhcCCCcccchhhhcCCCccCCCCCcchhHHHhhHHHHHhhcccccCCccccccCCCccCCCC
Q 004721 251 --NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTFASGILVPKDYIWPVDESLYLLP 328 (733)
Q Consensus 251 --~~i~SF~~~~l~~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~i~~~~~~i~~~~~~~~~~~ 328 (733)
++++||+++.+++++++.| +.+.+++...... . .+......+..+......+ .
T Consensus 128 ~~v~~~Sf~~~~l~~~~~~~P--~~~~~~~~~~~~~------~-------~~~~~~~~~~~~~~~~~~~----------~ 182 (240)
T d1zcca1 128 RDTFYFSFSEEMRQGLQSIAP--EFRRMMTLDIAKS------P-------SLVGAVHHASIIEITPAQM----------R 182 (240)
T ss_dssp TTEEEECSCHHHHHHHHHHCT--TSEEEEEHHHHSS------T-------HHHHHTTCCSEEEECHHHH----------H
T ss_pred cccccccccHHHHHHHHHhhh--ccceEEeeccccc------c-------hhHHHHhcccccccchhhh----------C
Confidence 5999999999999999998 6777753211100 0 1111111222222211111 2
Q ss_pred ChHHHHHHHHcCCeEEEeecCCCCCcccCCCCChHHHHHHHHhcCCcccceEEecCCCCccccchhcc
Q 004721 329 HTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPSAAVDCFA 396 (733)
Q Consensus 329 ~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~~~~~l~~~G~~~VDgIiTD~P~~~~~~l~~~~ 396 (733)
++++|+.+|++|++|++||+|++ .+.++.++++| ||||+||+|++++++++...
T Consensus 183 ~~~~v~~~~~~Gl~v~~wTvnd~-----------~~~~~~l~~~g---VdgI~TD~P~l~~~vr~~~~ 236 (240)
T d1zcca1 183 RPGIIEASRKAGLEIMVYYGGDD-----------MAVHREIATSD---VDYINLDRPDLFAAVRSGMA 236 (240)
T ss_dssp SHHHHHHHHHHTCEEEEECCCCC-----------HHHHHHHHHSS---CSEEEESCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHCCCEEEEEccCCH-----------HHHHHHHHHcC---CCEEEeCcHHHHHHHHHHHH
Confidence 47899999999999999999864 35678889999 99999999999888876653
|
| >d1o1za_ c.1.18.3 (A:) Hypothetical protein TM1621 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: PLC-like phosphodiesterases family: Glycerophosphoryl diester phosphodiesterase domain: Hypothetical protein TM1621 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=7e-43 Score=353.60 Aligned_cols=222 Identities=21% Similarity=0.213 Sum_probs=171.4
Q ss_pred CcceEEecCCCCCCCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeeccccccccccCCCcCCCcccccccccccCc
Q 004721 406 ANLLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSG 485 (733)
Q Consensus 406 ~~~~iIaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L~rtt~v~~~~~~~r~~~~~~~~~~~g 485 (733)
+.|+||||||+++.+||||++||++|++.|+|+||+|||+||||++||+||.+|+|+|| ++|
T Consensus 3 ~~~~iiaHRG~~~~~pENT~~af~~a~~~g~~~iE~Dv~~T~Dg~~Vv~HD~~l~r~t~------------------~~~ 64 (226)
T d1o1za_ 3 HHVIVLGHRGYSAKYLENTLEAFMKAIEAGANGVELDVRLSKDGKVVVSHDEDLKRLFG------------------LDV 64 (226)
T ss_dssp CCCEEEEETTTTTTSCTTSHHHHHHHHHTTCSEEEEEEEECTTSCEEECSSSEEHHHHC------------------EEE
T ss_pred CCCEEEECCCCCCCCCcchHHHHHHHHHcCCCEEEEEEEEccCCCEEeeccceeeeeec------------------ccc
Confidence 57899999999999999999999999999999999999999999999999999999999 667
Q ss_pred ccccccCHHHHhccCccccCCCccccccCCcCCCCCccccCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCCcHHHHH
Q 004721 486 IFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSV 565 (733)
Q Consensus 486 ~~i~d~T~~EL~~L~~~~~~~~~~~~~~~~~~~~g~~~IptLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~v 565 (733)
.|.++|++||++++. ++||||+|+|+++++. ..++||+|.+. ..+.+
T Consensus 65 -~i~~~t~~el~~l~~--------------------~~iptL~evl~~~~~~---~~l~iEiK~~~---------~~~~~ 111 (226)
T d1o1za_ 65 -KIRDATVSELKELTD--------------------GKITTLKEVFENVSDD---KIINIEIKERE---------AADAV 111 (226)
T ss_dssp -EGGGSCHHHHHHHTT--------------------TCCCBHHHHHHHSCTT---SEEEEEECCGG---------GHHHH
T ss_pred -eeeecchhhhhhhhh--------------------hcchhHHHHHHHhhcc---cccchhhcccc---------ccchh
Confidence 899999999998752 5799999999999765 47999999753 34567
Q ss_pred HHHHHHcCCCCCCCceEEEEeCCHHHHHHHHhccCceEEEEeecccchhhhHHHHHHHHHHhHhcCCCcccccCCcc-cc
Q 004721 566 MEALGNAGYNKQTALKVMIQSTDSSVLMKLREKTSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNSA-FI 644 (733)
Q Consensus 566 ~~~l~~~~~~~~~~~~vii~Sfd~~~L~~lk~~p~~~~~~l~~~~~~~~~~~~l~~i~~~a~~i~~~~~~i~~~~~~-~l 644 (733)
+++++++ ++++++||+++.++.+. |..+.++++...... ........+....+. .+...... ..
T Consensus 112 ~~~~~~~-------~~vi~~SF~~~~l~~~~--~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~--~~~~~~~~~~~ 176 (226)
T d1o1za_ 112 LEISKKR-------KNLIFSSFDLDLLDEKF--KGTKYGYLIDEENYG----SIENFVERVEKERPY--SLHVPYQAFEL 176 (226)
T ss_dssp HHHHTTC-------CSEEEEESCHHHHHHHC--TTSCEEEECCTTTTC----SHHHHHHHHHHHCCS--EEEEEGGGGGS
T ss_pred hhhhhhc-------cceeccccchHHHHHHH--hccceeeEecccccc----hhHHHHHhhhhcccc--cccCchhhhhh
Confidence 7766543 58999999998765422 788888887542111 111221222222211 11111000 11
Q ss_pred ccchHHHHHHHHCCCcEEEEecCCcccccccccCCChHHHHHHHHhhcCcCEEEeCChHHHHHH
Q 004721 645 TSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPMTAARY 708 (733)
Q Consensus 645 ~~~~~~v~~~~~~Gl~v~~wTvn~~~~~~~~~~~~d~~~e~~~~l~~~GVdgIiTD~P~~~~~~ 708 (733)
..++++++.+|++|++|++||||++ ++.+++ ++||||||||+|+.+.++
T Consensus 177 ~~~~~~v~~~~~~g~~v~~wTVN~~--------------~~~~~l-~~gVdgIiTD~P~~~~~~ 225 (226)
T d1o1za_ 177 EYAVEVLRSFRKKGIVIFVWTLNDP--------------EIYRKI-RREIDGVITDEVELFVKL 225 (226)
T ss_dssp HHHHHHHHHHHHTTCEEEEESCCCH--------------HHHHHH-GGGCSEEEESCHHHHHHT
T ss_pred hhhHHHHHHHHHCCCEEEEECCChH--------------HHHHHH-HcCCCEEEECcHHHHHhc
Confidence 1247899999999999999999987 466787 899999999999998874
|
| >d1o1za_ c.1.18.3 (A:) Hypothetical protein TM1621 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: PLC-like phosphodiesterases family: Glycerophosphoryl diester phosphodiesterase domain: Hypothetical protein TM1621 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=6.7e-43 Score=353.73 Aligned_cols=222 Identities=16% Similarity=0.142 Sum_probs=170.4
Q ss_pred CCCEEEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCCccccCccccccccccccccCCCCC
Q 004721 90 DPPFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPT 169 (733)
Q Consensus 90 ~~~~viaHRG~~~~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l~rtt~~~~~~~~~~~~~~~~g~~~ 169 (733)
++|+||||||+++.+||||++||+.|++.|+| +||+|||+||||++||+||.+|+|+|++.+
T Consensus 3 ~~~~iiaHRG~~~~~pENT~~af~~a~~~g~~--~iE~Dv~~T~Dg~~Vv~HD~~l~r~t~~~~---------------- 64 (226)
T d1o1za_ 3 HHVIVLGHRGYSAKYLENTLEAFMKAIEAGAN--GVELDVRLSKDGKVVVSHDEDLKRLFGLDV---------------- 64 (226)
T ss_dssp CCCEEEEETTTTTTSCTTSHHHHHHHHHTTCS--EEEEEEEECTTSCEEECSSSEEHHHHCEEE----------------
T ss_pred CCCEEEECCCCCCCCCcchHHHHHHHHHcCCC--EEEEEEEEccCCCEEeeccceeeeeecccc----------------
Confidence 57999999999999999999999999999999 999999999999999999999999999876
Q ss_pred CccccccCCHHhhccccccccccCCCCCCCCCCcccccHHHHHHhhCC-CceEeeccCchhhhhcCCcHHHHHHHHHhhc
Q 004721 170 PGWFSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKP-PGLWLNIQHDAFYAQHNLSMRSFVLSVSRSV 248 (733)
Q Consensus 170 ~g~~v~d~T~~eL~~l~~~~~~~~~~~~~~g~~~~iptL~e~l~~~~~-~~l~iEiK~~~~~~~~~~~~~~~v~~~l~~~ 248 (733)
.|.++||+||++++. .+||||+|+|+++++ ..++||+|.+ ...+.++++++++
T Consensus 65 ---~i~~~t~~el~~l~~---------------~~iptL~evl~~~~~~~~l~iEiK~~--------~~~~~~~~~~~~~ 118 (226)
T d1o1za_ 65 ---KIRDATVSELKELTD---------------GKITTLKEVFENVSDDKIINIEIKER--------EAADAVLEISKKR 118 (226)
T ss_dssp ---EGGGSCHHHHHHHTT---------------TCCCBHHHHHHHSCTTSEEEEEECCG--------GGHHHHHHHHTTC
T ss_pred ---eeeecchhhhhhhhh---------------hcchhHHHHHHHhhcccccchhhccc--------cccchhhhhhhhc
Confidence 799999999998852 489999999999974 7799999965 3567788999988
Q ss_pred CCceeccCCHHHHHHHHHhcCCCcccchhhhcCCCccCCCCCcchhHHHhhHHHHHhhcccccCCccccccCCCccCCCC
Q 004721 249 VVNYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTFASGILVPKDYIWPVDESLYLLP 328 (733)
Q Consensus 249 ~~~~i~SF~~~~l~~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~i~~~~~~i~~~~~~~~~~~ 328 (733)
+.++++||+++.++++.+ ..+..+++..... .........+... .+.++++++..+... .
T Consensus 119 ~~vi~~SF~~~~l~~~~~-----~~~~~~l~~~~~~------~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-------~ 178 (226)
T d1o1za_ 119 KNLIFSSFDLDLLDEKFK-----GTKYGYLIDEENY------GSIENFVERVEKE--RPYSLHVPYQAFELE-------Y 178 (226)
T ss_dssp CSEEEEESCHHHHHHHCT-----TSCEEEECCTTTT------CSHHHHHHHHHHH--CCSEEEEEGGGGGSH-------H
T ss_pred cceeccccchHHHHHHHh-----ccceeeEeccccc------chhHHHHHhhhhc--ccccccCchhhhhhh-------h
Confidence 888999999998876544 3344432221110 1111111111111 233344333322110 1
Q ss_pred ChHHHHHHHHcCCeEEEeecCCCCCcccCCCCChHHHHHHHHhcCCcccceEEecCCCCcccc
Q 004721 329 HTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPSAA 391 (733)
Q Consensus 329 ~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~~~~~l~~~G~~~VDgIiTD~P~~~~~~ 391 (733)
++++|+.+|++|++|++||||++ ++.+++++| |||||||+|++++++
T Consensus 179 ~~~~v~~~~~~g~~v~~wTVN~~-------------~~~~~l~~g---VdgIiTD~P~~~~~~ 225 (226)
T d1o1za_ 179 AVEVLRSFRKKGIVIFVWTLNDP-------------EIYRKIRRE---IDGVITDEVELFVKL 225 (226)
T ss_dssp HHHHHHHHHHTTCEEEEESCCCH-------------HHHHHHGGG---CSEEEESCHHHHHHT
T ss_pred hHHHHHHHHHCCCEEEEECCChH-------------HHHHHHHcC---CCEEEECcHHHHHhc
Confidence 36799999999999999999863 455678999 999999999987654
|
| >d1vd6a1 c.1.18.3 (A:8-224) Putative glycerophosphodiester phosphodiesterase TTHB141 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: PLC-like phosphodiesterases family: Glycerophosphoryl diester phosphodiesterase domain: Putative glycerophosphodiester phosphodiesterase TTHB141 species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=7e-41 Score=335.98 Aligned_cols=213 Identities=14% Similarity=0.069 Sum_probs=168.6
Q ss_pred CEEEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCCccccCccccccccccccccCCCCCCc
Q 004721 92 PFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPG 171 (733)
Q Consensus 92 ~~viaHRG~~~~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l~rtt~~~~~~~~~~~~~~~~g~~~~g 171 (733)
|+||||||+++.+||||++||+.|++.|++ +||+|||+||||++||+||.+++|+
T Consensus 1 P~iiaHRG~~~~~pENT~~a~~~a~~~G~~--~iE~DV~~TkDg~~vv~HD~~~~r~----------------------- 55 (217)
T d1vd6a1 1 PLRLGHRGAPLKAKENTLESFRLALEAGLD--GVELDVWPTRDGVFAVRHDPDTPLG----------------------- 55 (217)
T ss_dssp CEEEEETSCTTTSCTTSHHHHHHHHHTTCS--EEEEEEEECTTSCEEECSCSEETTE-----------------------
T ss_pred CeEEECCCCCCCCCchhHHHHHHHHHcCCC--EEEEEEEEecCCCEEEecccccCcc-----------------------
Confidence 789999999999999999999999999999 9999999999999999999999885
Q ss_pred cccccCCHHhhccccccccccCCCCCCCCCCcccccHHHHHHhhC---CCceEeeccCchhhhhcCCcHHHHHHHHHhhc
Q 004721 172 WFSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIK---PPGLWLNIQHDAFYAQHNLSMRSFVLSVSRSV 248 (733)
Q Consensus 172 ~~v~d~T~~eL~~l~~~~~~~~~~~~~~g~~~~iptL~e~l~~~~---~~~l~iEiK~~~~~~~~~~~~~~~v~~~l~~~ 248 (733)
.+.++|++||+.+ .++||||+|++++++ +..+++|+|......+ .....+++.++.+
T Consensus 56 -~i~~~~~~el~~~----------------~~~iptl~e~l~~~~~~~~~~~~ie~K~~~~~~~---~~~~~l~~~~~~~ 115 (217)
T d1vd6a1 56 -PVFQVDYADLKAQ----------------EPDLPRLEEVLALKEAFPQAVFNVELKSFPGLGE---EAARRLAALLRGR 115 (217)
T ss_dssp -EGGGSCHHHHHHH----------------STTCCBHHHHHGGGGTCTTCEEEEEECCCTTSHH---HHHHHHHHHTTTC
T ss_pred -cccchhHHHHhhh----------------hccCCCHHHHHHHHHhCCCceeeeeeccCcchhH---HHHHHHHHHhhcc
Confidence 3678999999754 258999999999885 3578899996432221 3455566666666
Q ss_pred CCceeccCCHHHHHHHHHhcCCCcccchhhhcCCCccCCCCCcchhHHHhhHHHHHhhcccccCCccccccCCCccCCCC
Q 004721 249 VVNYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTFASGILVPKDYIWPVDESLYLLP 328 (733)
Q Consensus 249 ~~~~i~SF~~~~l~~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~i~~~~~~i~~~~~~~~~~~ 328 (733)
..++++||++..+++++++.| +.++++ +..... ..+.. ...+.++++++..+
T Consensus 116 ~~v~~~Sf~~~~l~~~~~~~p--~~~~~~-l~~~~~---------~~~~~-----~~~~~~i~~~~~~~----------- 167 (217)
T d1vd6a1 116 EGVWVSSFDPLALLALRKAAP--GLPLGF-LMAEDH---------SALLP-----CLGVEAVHPHHALV----------- 167 (217)
T ss_dssp SSEEEEESCHHHHHHHHHHCT--TSCEEE-EESSCC---------GGGGG-----GSCCSEEEEBGGGC-----------
T ss_pred ceEEEeeccHHHHHHHHHHhc--cCceee-eccccc---------cchhh-----hccceEEcchHhHH-----------
Confidence 667999999999999999998 677776 332211 11100 01234444443332
Q ss_pred ChHHHHHHHHcCCeEEEeecCCCCCcccCCCCChHHHHHHHHhcCCcccceEEecCCCCccccc
Q 004721 329 HTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPSAAV 392 (733)
Q Consensus 329 ~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~~~~~l~~~G~~~VDgIiTD~P~~~~~~l 392 (733)
++++|+++|++|++|++||||++ +++++++++| ||||+||+|+++.++.
T Consensus 168 ~~~~v~~~~~~g~~v~~wTvn~~------------~~~~~~~~~g---vdgI~TD~P~~l~~l~ 216 (217)
T d1vd6a1 168 TEEAVAGWRKRGLFVVAWTVNEE------------GEARRLLALG---LDGLIGDRPEVLLPLG 216 (217)
T ss_dssp CHHHHHHHHHTTCEEEEECCCCH------------HHHHHHHHTT---CSEEEESCHHHHTTSC
T ss_pred HHHHHHHHHHCCCEEEEECCCCH------------HHHHHHHhCC---CCEEEECCHHHHhhcc
Confidence 47899999999999999999874 8899999999 9999999999887653
|
| >d1vd6a1 c.1.18.3 (A:8-224) Putative glycerophosphodiester phosphodiesterase TTHB141 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: PLC-like phosphodiesterases family: Glycerophosphoryl diester phosphodiesterase domain: Putative glycerophosphodiester phosphodiesterase TTHB141 species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=2.4e-40 Score=332.06 Aligned_cols=214 Identities=17% Similarity=0.160 Sum_probs=173.3
Q ss_pred ceEEecCCCCCCCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeeccccccccccCCCcCCCcccccccccccCccc
Q 004721 408 LLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIF 487 (733)
Q Consensus 408 ~~iIaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L~rtt~v~~~~~~~r~~~~~~~~~~~g~~ 487 (733)
|+||||||+++.+||||++||++|++.|+++||+|||+||||++||+||.++.|++
T Consensus 1 P~iiaHRG~~~~~pENT~~a~~~a~~~G~~~iE~DV~~TkDg~~vv~HD~~~~r~~------------------------ 56 (217)
T d1vd6a1 1 PLRLGHRGAPLKAKENTLESFRLALEAGLDGVELDVWPTRDGVFAVRHDPDTPLGP------------------------ 56 (217)
T ss_dssp CEEEEETSCTTTSCTTSHHHHHHHHHTTCSEEEEEEEECTTSCEEECSCSEETTEE------------------------
T ss_pred CeEEECCCCCCCCCchhHHHHHHHHHcCCCEEEEEEEEecCCCEEEecccccCccc------------------------
Confidence 78999999999999999999999999999999999999999999999999998743
Q ss_pred ccccCHHHHhccCccccCCCccccccCCcCCCCCccccCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCCcHHHHHHH
Q 004721 488 SFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVME 567 (733)
Q Consensus 488 i~d~T~~EL~~L~~~~~~~~~~~~~~~~~~~~g~~~IptLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~v~~ 567 (733)
+.++|++||+.+ .+++|||+|++++++..++. .+++|+|..... ....+..
T Consensus 57 i~~~~~~el~~~---------------------~~~iptl~e~l~~~~~~~~~-~~~ie~K~~~~~-------~~~~~~~ 107 (217)
T d1vd6a1 57 VFQVDYADLKAQ---------------------EPDLPRLEEVLALKEAFPQA-VFNVELKSFPGL-------GEEAARR 107 (217)
T ss_dssp GGGSCHHHHHHH---------------------STTCCBHHHHHGGGGTCTTC-EEEEEECCCTTS-------HHHHHHH
T ss_pred ccchhHHHHhhh---------------------hccCCCHHHHHHHHHhCCCc-eeeeeeccCcch-------hHHHHHH
Confidence 578999999753 25799999999999876554 789999965421 2234455
Q ss_pred HHHHcCCCCCCCceEEEEeCCHHHHHHHHhc-cCceEEEEeecccchhhhHHHHHHHHHHhHhcCCCcccccCCcccccc
Q 004721 568 ALGNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNSAFITS 646 (733)
Q Consensus 568 ~l~~~~~~~~~~~~vii~Sfd~~~L~~lk~~-p~~~~~~l~~~~~~~~~~~~l~~i~~~a~~i~~~~~~i~~~~~~~l~~ 646 (733)
+++.++.. ++++++||++..+.++++. |+++++++....... +....++ ..+.+ .+...
T Consensus 108 l~~~~~~~----~~v~~~Sf~~~~l~~~~~~~p~~~~~~l~~~~~~~-----------~~~~~~~--~~i~~---~~~~~ 167 (217)
T d1vd6a1 108 LAALLRGR----EGVWVSSFDPLALLALRKAAPGLPLGFLMAEDHSA-----------LLPCLGV--EAVHP---HHALV 167 (217)
T ss_dssp HHHHTTTC----SSEEEEESCHHHHHHHHHHCTTSCEEEEESSCCGG-----------GGGGSCC--SEEEE---BGGGC
T ss_pred HHHHhhcc----ceEEEeeccHHHHHHHHHHhccCceeeeccccccc-----------hhhhccc--eEEcc---hHhHH
Confidence 55666666 7999999999999999999 999999998654321 1111221 22222 22344
Q ss_pred chHHHHHHHHCCCcEEEEecCCcccccccccCCChHHHHHHHHhhcCcCEEEeCChHHHHHH
Q 004721 647 ATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPMTAARY 708 (733)
Q Consensus 647 ~~~~v~~~~~~Gl~v~~wTvn~~~~~~~~~~~~d~~~e~~~~l~~~GVdgIiTD~P~~~~~~ 708 (733)
++++++.+|++|+.|++||+|++. ++.+++ ++|||||+||+|+.+.++
T Consensus 168 ~~~~v~~~~~~g~~v~~wTvn~~~-------------~~~~~~-~~gvdgI~TD~P~~l~~l 215 (217)
T d1vd6a1 168 TEEAVAGWRKRGLFVVAWTVNEEG-------------EARRLL-ALGLDGLIGDRPEVLLPL 215 (217)
T ss_dssp CHHHHHHHHHTTCEEEEECCCCHH-------------HHHHHH-HTTCSEEEESCHHHHTTS
T ss_pred HHHHHHHHHHCCCEEEEECCCCHH-------------HHHHHH-hCCCCEEEECCHHHHhhc
Confidence 789999999999999999999987 889887 999999999999988753
|
| >d1qasa3 c.1.18.1 (A:299-625) Phospholipase C isozyme D1 (PLC-D1) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: PLC-like phosphodiesterases family: Mammalian PLC domain: Phospholipase C isozyme D1 (PLC-D1) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.28 E-value=0.01 Score=60.18 Aligned_cols=51 Identities=16% Similarity=0.115 Sum_probs=42.4
Q ss_pred EEEEeCCCC---CCCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCC
Q 004721 93 FVVARGGFS---GIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKL 145 (733)
Q Consensus 93 ~viaHRG~~---~~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l 145 (733)
+-.+|+-+- -..-.-++.++..|++.||. .||+||+--.||+|||.|..++
T Consensus 9 I~SShNtyl~g~Ql~~~ss~~~~~~~l~~G~R--~ielD~w~g~d~ePvV~HG~t~ 62 (327)
T d1qasa3 9 VSSSHNTYLLEDQLTGPSSTEAYIRALCKGCR--CLELDCWDGPNQEPIIYHGYTF 62 (327)
T ss_dssp EEEESSTTBSSCSSSCCBCHHHHHHHHHTTCC--EEEEEEECCGGGCCEESCTTSC
T ss_pred eeccccccccCCcccCcccHHHHHHHHHhCCc--EEEEEeecCCCCCeEEeeCCcc
Confidence 346777754 23456789999999999999 9999999989999999998654
|
| >d2zkmx4 c.1.18.1 (X:312-660) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: PLC-like phosphodiesterases family: Mammalian PLC domain: Phospholipase C-beta-2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.59 E-value=0.022 Score=58.07 Aligned_cols=48 Identities=17% Similarity=0.124 Sum_probs=38.3
Q ss_pred EeCCCC---CCCCccHHHHHHHHHHcCCCCcEEEeeeee--cCCCeEEEecCCCC
Q 004721 96 ARGGFS---GIFPDSSSIAYSLTLITSAPSVILWCDVQL--TKDEAGICFPDLKL 145 (733)
Q Consensus 96 aHRG~~---~~~pENTl~af~~A~~~g~d~~~iE~DV~l--TkDg~lVv~HD~~l 145 (733)
+|+-+- ...-.-++.||..|++.||. .||+||+= +.||++||.|..++
T Consensus 15 ShNtyl~g~q~~~~~s~~~~~~~l~~G~R--~~eldi~dG~~~d~~Pvv~hg~t~ 67 (349)
T d2zkmx4 15 SHNTYLTAGQFSGLSSAEMYRQVLLSGCR--CVELDCWKGKPPDEEPIITHGFTM 67 (349)
T ss_dssp BSSTTBSSCSSSSCBCTHHHHHHHHTTCC--EEEEEEECCCTTCCSCEECCTTSS
T ss_pred cccccccCCcCCCcccHHHHHHHHHhCCc--EEEEEecCCCCCCCCcEEeeCCee
Confidence 555543 23446689999999999999 99999995 57999999998654
|
| >d1qasa3 c.1.18.1 (A:299-625) Phospholipase C isozyme D1 (PLC-D1) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: PLC-like phosphodiesterases family: Mammalian PLC domain: Phospholipase C isozyme D1 (PLC-D1) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.87 E-value=0.021 Score=57.86 Aligned_cols=52 Identities=15% Similarity=0.119 Sum_probs=43.2
Q ss_pred ceEEecCCCC---CCCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeecccc
Q 004721 408 LLVISKNGAS---GDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINL 459 (733)
Q Consensus 408 ~~iIaHRG~~---~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L 459 (733)
.+--+|+-+- ...-.-++.||..|++.||+.||+||+--.||+|||.|..++
T Consensus 8 fI~SShNtyl~g~Ql~~~ss~~~~~~~l~~G~R~ielD~w~g~d~ePvV~HG~t~ 62 (327)
T d1qasa3 8 LVSSSHNTYLLEDQLTGPSSTEAYIRALCKGCRCLELDCWDGPNQEPIIYHGYTF 62 (327)
T ss_dssp EEEEESSTTBSSCSSSCCBCHHHHHHHHHTTCCEEEEEEECCGGGCCEESCTTSC
T ss_pred eeeccccccccCCcccCcccHHHHHHHHHhCCcEEEEEeecCCCCCeEEeeCCcc
Confidence 3456787753 245567899999999999999999999989999999998654
|
| >d2zkmx4 c.1.18.1 (X:312-660) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: PLC-like phosphodiesterases family: Mammalian PLC domain: Phospholipase C-beta-2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.42 E-value=0.037 Score=56.42 Aligned_cols=50 Identities=12% Similarity=0.055 Sum_probs=39.6
Q ss_pred EEecCCCC---CCCCCchHHHHHHHHHCCCCeeecCcee--ecCCeEEEeecccc
Q 004721 410 VISKNGAS---GDYPSCTNLAYQKAISDGVDFIDCPVQM--SKDGVPFCLSFINL 459 (733)
Q Consensus 410 iIaHRG~~---~~~PENTl~Af~~A~~~Gad~iE~DV~l--TkDgv~Vv~HD~~L 459 (733)
--+|+-+- ...-.-++.||..|+..||+.||+||+= ++||+|||.|..++
T Consensus 13 ~SShNtyl~g~q~~~~~s~~~~~~~l~~G~R~~eldi~dG~~~d~~Pvv~hg~t~ 67 (349)
T d2zkmx4 13 NSSHNTYLTAGQFSGLSSAEMYRQVLLSGCRCVELDCWKGKPPDEEPIITHGFTM 67 (349)
T ss_dssp CBBSSTTBSSCSSSSCBCTHHHHHHHHTTCCEEEEEEECCCTTCCSCEECCTTSS
T ss_pred eccccccccCCcCCCcccHHHHHHHHHhCCcEEEEEecCCCCCCCCcEEeeCCee
Confidence 34566542 2345678999999999999999999994 46999999998665
|