Citrus Sinensis ID: 004724

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730---
MHVGGITVDLNWFLQLILTVFIIAFGLLHLVKNTASKYFEVDANFEGGTTTDRSNGHAMSSSVPSGSSDDLSCIVCGNPGSKKCSRCKSVRYCSSKCQTSHWQSGHKRKCKDIGKINSVQGPRSDFGSKISSTGGKNFSGIALVPTHGTSKVIKKPREILFPYDEFLKLFNWDKPGFAPCGLLNCGNSCFANVVLQCLTYTRPLVAYLLEKGHRKECGRDDWCFLCEFQTHVEKASQSSHPFSPMSILSRLPNIGGNLGYGRQEDAHEFMRFAIDTMQSICLDEFGGEKAVPPRSQETTLIQHIFGGHLQSQVICSKCNNISNQYENMMDLTVEIHGDAASLEECLDQFTAKEWLDGDNMYKCDGCNDYVKAWKRLTVRRAPNILTIALKRFQSGRFGKLNKRVTFPETLDLSPYMSDGGDRTDVYKLYAVVVHVDMLNASFFGHYICYVKDFRGHWYRVDDCKVTSVDLEEVLSQGAYMLLYNRVSARPSYLVDTESSSSRKEEPSAVNAETEPKEVECSSTMESINPNSRSLSLPCDDFSHLRVSSCKSKSAGAIDPQAVPAHFKDTNVDNIESSSNGVFSHESHSSSFGLNSEDLRVDAMDVDTANAQSSSWDRQDFSNCNGKLSEAKRGIQDDMNIDDPETSLSVPKAVPCLDSDSEAVLKDTEGMNIVKSEPSSLAAKDIKVCGSICPCPSETSSATLYNWKHETPFNGLDDDENGFKRVGIEEEISQ
cccccEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccHHHHHHHHHHHccHHHHHHHHHcccccccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccEEEEEEEEEccEEEccccccccccccccEEEEcccccccccHHHHHHHccccEEcccccccccccccccEEEEEEEEccccccEEEEEEcccccccccccccEEcccccccccccccccccccccEEEEEEEEEEcccccccccEEEEEEEcccccEEEEEcccEEEEccHHHcccccEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccHHHHHHc
ccccEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEHHHHccccccccccccccccccccccccccccEccccccccEEEEEEEEcccccccccccccccccHcccccccccccccccccEccccccccccccccccccccccccccccccccEcccHHHHHHHHcccccccccccHHccccHHHHHHHHHHHHccHHHHHHHHHcccccccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHcccHHHHHHccccccEEEEEEccccccccccccEEEEEccccHHHHHHHHHHHccHHHccccccccHHHHHccccccEEEEEEccccEEEEEEEEEcccccccEcEEcccccccccccccccccccccEEEEEEEEEEccccccccccEEEEEEEccccEEEEEccccEEEccHHHHHHcccEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccEcccEHEccc
MHVGGITVDLNWFLQLILTVFIIAFGLLHLVKNTASKYFevdanfeggtttdrsnghamsssvpsgssddlscivcgnpgskkcsrcksvrycsskcqtshwqsghkrkckdigkinsvqgprsdfgskisstggknfsgialvpthgtskvikkpreilfpYDEFLKlfnwdkpgfapcgllncgnscfANVVLQCLTYTRPLVAYLLEkghrkecgrddwcflcefqthvekasqsshpfspmsilsrlpniggnlgygrqeDAHEFMRFAIDTMQSIcldefggekavpprsqetTLIQHIFGGHLQSQVICSKCNNISNQYENMMDLTVEIHGDAASLEECLDQFtakewldgdnmykcdgcndYVKAWKRLTVRRAPNILTIALKRfqsgrfgklnkrvtfpetldlspymsdggdrtdvYKLYAVVVHVDMLNASFFGHYICYVKdfrghwyrvddckvtsVDLEEVLSQGAYMLLYNRvsarpsylvdtessssrkeepsavnaetepkevecsstmesinpnsrslslpcddfshlrvsscksksagaidpqavpahfkdtnvdniesssngvfsheshsssfglnsedlrvdamdvdtanaqssswdrqdfsncngklseakrgiqddmniddpetslsvpkavpcldsdseavlkdtegmnivksepsslaakdikvcgsicpcpsetssatlynwkhetpfngldddengfkrVGIEEEISQ
MHVGGITVDLNWFLQLILTVFIIAFGLLHLVKNTASKYFEVDANFEggtttdrsngHAMSssvpsgssddLSCIVCGNPGSKKCSRCKSVRYCSSkcqtshwqsghkrkckdigkinsvqgprsdFGSKIsstggknfsgialvpthgtskvikkpREILFPYDEFLKLFNWDKPGFAPCGLLNCGNSCFANVVLQCLTYTRPLVAYLLEKGHRKECGRDDWCFLCEFQTHVEKasqsshpfspMSILSRLPNIGGNLGYGRQEDAHEFMRFAIDTMQSICLDEFGGEKAVPPRSQETTLIQHIFGGHLQSQVICSKCNNISNQYENMMDLTVEIHGDAASLEECLDQFTAKEWLDGDNMYKCDGCNDYVKAWKRLTVRRAPNILTIalkrfqsgrfgklnkrvtfpetldlspymsdggdRTDVYKLYAVVVHVDMLNASFFGHYICYVKDFRGHWYRVDDCKVTSVDLEEVLSQGAYMLLYNRVSARPSYLVdtessssrkeepsavnaetepkevecsstmesinpnsrslSLPCDDFSHLRVSSCKSKsagaidpqavpahfKDTNVDNIESSSNGVFSHESHSSSFGLNSEDLRVDAMDVDTAnaqssswdrqdfsnCNGKLSEAKRGIQDDMNIDDPETSLSVPKAVPCLDSDSEavlkdtegmnivksepsslaakDIKVCGSICPCPSETSSATLYNWKHEtpfngldddenGFKRVGIEEEISQ
MHVGGITVDLNWFLQLILTVFIIAFGLLHLVKNTASKYFEVDANFEGGTTTDRSNGHAMsssvpsgssddlsCIVCGNPGSKKCSRCKSVRYCSSKCQTSHWQSGHKRKCKDIGKINSVQGPRSDFGSKISSTGGKNFSGIALVPTHGTSKVIKKPREILFPYDEFLKLFNWDKPGFAPCGLLNCGNSCFANVVLQCLTYTRPLVAYLLEKGHRKECGRDDWCFLCEFQTHVEKASQSSHPFSPMSILSRLPNIGGNLGYGRQEDAHEFMRFAIDTMQSICLDEFGGEKAVPPRSQETTLIQHIFGGHLQSQVICSKCNNISNQYENMMDLTVEIHGDAASLEECLDQFTAKEWLDGDNMYKCDGCNDYVKAWKRLTVRRAPNILTIALKRFQSGRFGKLNKRVTFPETLDLSPYMSDGGDRTDVYKLYAVVVHVDMLNASFFGHYICYVKDFRGHWYRVDDCKVTSVDLEEVLSQGAYMLLYNRVSARPSYLVDTESSSSRKEEPSAVNAETEPKEVECSSTMESINPNSRSLSLPCDDFSHLRVSSCKSKSAGAIDPQAVPAHFKDTNVDNIESSSNGVFSHESHSSSFGLNSEDLRVDAMDVDTANAQSSSWDRQDFSNCNGKLSEAKRGIQDDMNIDDPETSLSVPKAVPCLDSDSEAVLKDTEGMNIVKSEPSSLAAKDIKVCGSICPCPSETSSATLYNWKHETPFNGLDDDENGFKRVGIEEEISQ
***GGITVDLNWFLQLILTVFIIAFGLLHLVKNTASKYFEVDANF**************************SCIVCGNPGSKKCSRCKSVRYCSSKCQTSHWQ**********************************FSGIALVPTHGTSKVIKKPREILFPYDEFLKLFNWDKPGFAPCGLLNCGNSCFANVVLQCLTYTRPLVAYLLEKGHRKECGRDDWCFLCEFQTHV**************ILSRLPNIGGNLGYGRQEDAHEFMRFAIDTMQSICLDEFGGEKAV*****ETTLIQHIFGGHLQSQVICSKCNNISNQYENMMDLTVEIHGDAASLEECLDQFTAKEWLDGDNMYKCDGCNDYVKAWKRLTVRRAPNILTIALKRFQSGRFGKLNKRVTFPETLDLSPYMSDGGDRTDVYKLYAVVVHVDMLNASFFGHYICYVKDFRGHWYRVDDCKVTSVDLEEVLSQGAYMLLYNRVSAR************************************************************************************************************************************************************************************************AKDIKVCGSICPCPSETSSATLYNWKHETPF*********************
***GGITVDLNWFLQLILTVFIIAFGLLHLVKNTASKYFEVDANFEGGT*************************VCGNPGSKKCSRCKSVRYCSSKCQT**W************************************************************YDEFLKLFNWDKPGFAPCGLLNCGNSCFANVVLQCLTYTRPLVAYLLEKGHRKECGRDDWCFLCEFQTHVEKASQSSHPFSPMSILSRLPNIGGNLGYGRQEDAHEFMRFAIDTMQSI******************TLIQHIFGGHLQSQVICSKCNNISNQYENMMDLTVEIHGDAASLEECLDQFTAKEWLDGDNMYKCDGCNDYVKAWKRLTVRRAPNILTIALKRFQSGRFGKLNKRVTFPETLDLSPYMSDGGDRTDVYKLYAVVVHVDMLNASFFGHYICYVKDFRGHWYRVDDCKVTSVDLEEVLSQGAYMLLYN*********************************************************************************************************************************************************************************************************************************************************
MHVGGITVDLNWFLQLILTVFIIAFGLLHLVKNTASKYFEVDANFEGGTTTD******************LSCIVCGNPG*****************************CKDIGKINSVQGPRSDFGSKISSTGGKNFSGIALVPTHGTSKVIKKPREILFPYDEFLKLFNWDKPGFAPCGLLNCGNSCFANVVLQCLTYTRPLVAYLLEKGHRKECGRDDWCFLCEFQTHV**********SPMSILSRLPNIGGNLGYGRQEDAHEFMRFAIDTMQSICLDEFGGEKAVPPRSQETTLIQHIFGGHLQSQVICSKCNNISNQYENMMDLTVEIHGDAASLEECLDQFTAKEWLDGDNMYKCDGCNDYVKAWKRLTVRRAPNILTIALKRFQSGRFGKLNKRVTFPETLDLSPYMSDGGDRTDVYKLYAVVVHVDMLNASFFGHYICYVKDFRGHWYRVDDCKVTSVDLEEVLSQGAYMLLYNRVSARPS****************************************RSLSLPCDDFSHLRVSSCKSKSAGAIDPQAVPAHFKDTNVDNIESSS**************LNSEDLRVDAMDVD**************SNCNGKLSEAKRGIQDDMNIDDPETSLSVPKAVPCLDSDSEAVLKDTEGMNIVKSEPSSLAAKDIKVCGSICPCPSETSSATLYNWKHETPFNGLDDDENGFKRVGIEEEISQ
**VGGITVDLNWFLQLILTVFIIAFGLLHLVKNTASKYFEVDANFEGGTT*******************DLSCIVCGNPGSKKCSRCKSVRYCSSKCQTSHWQSGHK*******KINSVQGPRSDFGS***********************VIKKPREILFPYDEFLKLFNWDKPGFAPCGLLNCGNSCFANVVLQCLTYTRPLVAYLLEKGHRKECGRDDWCFLCEFQTHVEKASQSSHPFSPMSILSRLPNIGGNLGYGRQEDAHEFMRFAIDTMQSICLDEFGGEKAVPPRSQETTLIQHIFGGHLQSQVICSKCNNISNQYENMMDLTVEIHGDAASLEECLDQFTAKEWLDGDNMYKCDGCNDYVKAWKRLTVRRAPNILTIALKRFQSGRFGKLNKRVTFPETLDLSPYMSDGGDRTDVYKLYAVVVHVDMLNASFFGHYICYVKDFRGHWYRVDDCKVTSVDLEEVLSQGAYMLLYNRVSA*****************************************************************************************************************************************************************************************************************************TPFNGLDDDENGFKRVGIEEEIS*
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MHVGGITVDLNWFLQLILTVFIIAFGLLHLVKNTASKYFEVDANFEGGTTTDRSNGHAMSSSVPSGSSDDLSCIVCGNPGSKKCSRCKSVRYCSSKCQTSHWQSGHKRKCKDIGKINSVQGPRSDFGSKISSTGGKNFSGIALVPTHGTSKVIKKPREILFPYDEFLKLFNWDKPGFAPCGLLNCGNSCFANVVLQCLTYTRPLVAYLLEKGHRKECGRDDWCFLCEFQTHVEKASQSSHPFSPMSILSRLPNIGGNLGYGRQEDAHEFMRFAIDTMQSICLDEFGGEKAVPPRSQETTLIQHIFGGHLQSQVICSKCNNISNQYENMMDLTVEIHGDAASLEECLDQFTAKEWLDGDNMYKCDGCNDYVKAWKRLTVRRAPNILTIALKRFQSGRFGKLNKRVTFPETLDLSPYMSDGGDRTDVYKLYAVVVHVDMLNASFFGHYICYVKDFRGHWYRVDDCKVTSVDLEEVLSQGAYMLLYNRVSARPSYLVDTESSSSRKEEPSAVNAETEPKEVECSSTMESINPNSRSLSLPCDDFSHLRVSSCKSKSAGAIDPQAVPAHFKDTNVDNIESSSNGVFSHESHSSSFGLNSEDLRVDAMDVDTANAQSSSWDRQDFSNCNGKLSEAKRGIQDDMNIDDPETSLSVPKAVPCLDSDSEAVLKDTEGMNIVKSEPSSLAAKDIKVCGSICPCPSETSSATLYNWKHETPFNGLDDDENGFKRVGIEEEISQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query733 2.2.26 [Sep-21-2011]
Q9SJA1672 Ubiquitin carboxyl-termin yes no 0.809 0.882 0.592 0.0
Q67XW5631 Ubiquitin carboxyl-termin no no 0.653 0.759 0.668 0.0
Q9FPS9924 Ubiquitin carboxyl-termin no no 0.454 0.360 0.552 1e-113
Q9SB511008 Ubiquitin carboxyl-termin no no 0.500 0.364 0.474 1e-103
Q9FKP5731 Ubiquitin carboxyl-termin no no 0.447 0.448 0.537 2e-98
D3ZU96 1325 Ubiquitin carboxyl-termin yes no 0.443 0.245 0.413 2e-74
B2RQC2 1324 Ubiquitin carboxyl-termin yes no 0.443 0.245 0.413 3e-74
Q9H9J4 1324 Ubiquitin carboxyl-termin yes no 0.443 0.245 0.413 9e-74
E1B9W9 1333 Ubiquitin carboxyl-termin yes no 0.443 0.243 0.410 2e-73
Q9P275 1121 Ubiquitin carboxyl-termin no no 0.476 0.311 0.393 1e-71
>sp|Q9SJA1|UBP19_ARATH Ubiquitin carboxyl-terminal hydrolase 19 OS=Arabidopsis thaliana GN=UBP19 PE=2 SV=2 Back     alignment and function desciption
 Score =  724 bits (1869), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/619 (59%), Positives = 439/619 (70%), Gaps = 26/619 (4%)

Query: 1   MHVGGITVDLNWFLQLILTVFIIAFGLLHLVKNTASKYFEVDANFEGGTTTDRSNGHAMS 60
           MH  G+ VDLN F QLILT+F ++ GLL+ VK TA+KYFEV     GG +      H   
Sbjct: 1   MHEVGLFVDLNSFTQLILTLFFVSIGLLYFVKRTAAKYFEV-----GGGSGGFDRDHRRD 55

Query: 61  SSVPSGSSDDLSCIVCGNPGSKKCSRCKSVRYCSSKCQTSHWQSGHKRKCKDIGKINSVQ 120
             V    SD   C VCG   +KKCSRCKSVRYCS+ CQTS W+SGHK KCK     +S  
Sbjct: 56  FMV----SDTAECSVCGKATTKKCSRCKSVRYCSAACQTSDWKSGHKLKCKGFRSTDSSP 111

Query: 121 GPRSDFGSKISSTGGKNFSG---IALVPTHGTSKVIKKPREILFPYDEFLKLFNWDKPGF 177
             R D   + S  G ++ S    IALVP    SK   KP ++LFPY+ F++ +NWD+P  
Sbjct: 112 VRRDDIDFEASLFGNRSASKKTRIALVPQQSQSKATLKPTDVLFPYESFVRYYNWDRPIM 171

Query: 178 APCGLLNCGNSCFANVVLQCLTYTRPLVAYLLEKGHRKECGRDDWCFLCEFQTHVEKASQ 237
           APCGL NCGNSCFANVVLQCL++TRPLVAYLLE+GH++EC R+DWCFLCEF+ H+++A+ 
Sbjct: 172 APCGLTNCGNSCFANVVLQCLSWTRPLVAYLLERGHKRECRRNDWCFLCEFENHLDRANY 231

Query: 238 SSHPFSPMSILSRLPNIGGNLGYGRQEDAHEFMRFAIDTMQSICLDEFGGEKAVPPRSQE 297
           S  PFSPM+I+SRLPNIGGNLGYGRQEDAHE MRFAID MQS+CLDEFGGEK VPPR+QE
Sbjct: 232 SRFPFSPMNIISRLPNIGGNLGYGRQEDAHELMRFAIDMMQSVCLDEFGGEKVVPPRAQE 291

Query: 298 TTLIQHIFGGHLQSQVICSKCNNISNQYENMMDLTVEIHGDAASLEECLDQFTAKEWLDG 357
           TTLIQ+IFGG LQSQV C+ C+N+S+QYENMMDLTVEIHGDA SLEECLDQFTAKEWL G
Sbjct: 292 TTLIQYIFGGLLQSQVQCTACSNVSDQYENMMDLTVEIHGDAVSLEECLDQFTAKEWLQG 351

Query: 358 DNMYKCDGCNDYVKAWKRLTVRRAPNILTIALKRFQSGRFGKLNKRVTFPETLDLSPYMS 417
           DN+YKCD C+DYVKA KRL++R APNILTIALKRFQ GRFGKLNKR++FPET DL PYMS
Sbjct: 352 DNLYKCDRCDDYVKACKRLSIRCAPNILTIALKRFQGGRFGKLNKRISFPETFDLGPYMS 411

Query: 418 DGGDRTDVYKLYAVVVHVDMLNASFFGHYICYVKDFRGHWYRVDDCKVTSVDLEEVLSQG 477
            GG+ +DVYKLYAV+VH+DMLNASFFGHYICYVKDFRG+WYR+DD +V  V+LE+VLSQ 
Sbjct: 412 GGGEGSDVYKLYAVIVHLDMLNASFFGHYICYVKDFRGNWYRIDDSEVEKVELEDVLSQR 471

Query: 478 AYMLLYNRVSARPSYLVDTESSSSRKEEPSAVNAET-EPKEVECSSTMESINPNSRSLSL 536
           AYMLLY+RV  RPS L   ES   +K +   +N E+ +   VE S     +  N  S+S 
Sbjct: 472 AYMLLYSRVQPRPSNLRSEESQDEKKTD--TLNTESNQDGSVESS----GVGTNDTSVSS 525

Query: 537 PCDD-FSHLRVSSC-KSKSAGAIDPQAVPAHFKDTNVDNIESSSNGVFSHE-----SHSS 589
            C+   SH       K  S  A  P +      D  VD ++S SN     E      H  
Sbjct: 526 LCNGIISHSEDPEYEKESSLSASVPVSEEGKEVDVKVDTVDSESNRSIDMEHDSGTDHQE 585

Query: 590 SFGLNSEDLRVDAMDVDTA 608
                 ED  V+ + VD++
Sbjct: 586 EEANGKEDPTVENLAVDSS 604
Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 1EC: 9EC: .EC: 1EC: 2
>sp|Q67XW5|UBP18_ARATH Ubiquitin carboxyl-terminal hydrolase 18 OS=Arabidopsis thaliana GN=UBP18 PE=2 SV=2 Back     alignment and function description
>sp|Q9FPS9|UBP15_ARATH Ubiquitin carboxyl-terminal hydrolase 15 OS=Arabidopsis thaliana GN=UBP15 PE=2 SV=2 Back     alignment and function description
>sp|Q9SB51|UBP16_ARATH Ubiquitin carboxyl-terminal hydrolase 16 OS=Arabidopsis thaliana GN=UBP16 PE=2 SV=1 Back     alignment and function description
>sp|Q9FKP5|UBP17_ARATH Ubiquitin carboxyl-terminal hydrolase 17 OS=Arabidopsis thaliana GN=UBP17 PE=2 SV=1 Back     alignment and function description
>sp|D3ZU96|UBP42_RAT Ubiquitin carboxyl-terminal hydrolase 42 OS=Rattus norvegicus GN=Usp42 PE=3 SV=1 Back     alignment and function description
>sp|B2RQC2|UBP42_MOUSE Ubiquitin carboxyl-terminal hydrolase 42 OS=Mus musculus GN=Usp42 PE=2 SV=1 Back     alignment and function description
>sp|Q9H9J4|UBP42_HUMAN Ubiquitin carboxyl-terminal hydrolase 42 OS=Homo sapiens GN=USP42 PE=1 SV=3 Back     alignment and function description
>sp|E1B9W9|UBP42_BOVIN Ubiquitin carboxyl-terminal hydrolase 42 OS=Bos taurus GN=USP42 PE=3 SV=1 Back     alignment and function description
>sp|Q9P275|UBP36_HUMAN Ubiquitin carboxyl-terminal hydrolase 36 OS=Homo sapiens GN=USP36 PE=1 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query733
255548628632 cysteine-type endopeptidase, putative [R 0.724 0.840 0.732 0.0
359476454 940 PREDICTED: ubiquitin carboxyl-terminal h 0.753 0.587 0.687 0.0
449486818711 PREDICTED: ubiquitin carboxyl-terminal h 0.914 0.942 0.587 0.0
449447371711 PREDICTED: ubiquitin carboxyl-terminal h 0.914 0.942 0.585 0.0
224089481489 predicted protein [Populus trichocarpa] 0.663 0.993 0.756 0.0
224142061489 predicted protein [Populus trichocarpa] 0.664 0.995 0.763 0.0
356509862742 PREDICTED: ubiquitin carboxyl-terminal h 0.819 0.809 0.605 0.0
356554161729 PREDICTED: ubiquitin carboxyl-terminal h 0.773 0.777 0.642 0.0
356563968735 PREDICTED: ubiquitin carboxyl-terminal h 0.772 0.770 0.637 0.0
356518197734 PREDICTED: ubiquitin carboxyl-terminal h 0.845 0.844 0.583 0.0
>gi|255548628|ref|XP_002515370.1| cysteine-type endopeptidase, putative [Ricinus communis] gi|223545314|gb|EEF46819.1| cysteine-type endopeptidase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  842 bits (2175), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/543 (73%), Positives = 456/543 (83%), Gaps = 12/543 (2%)

Query: 1   MHVGGITVDLNWFLQLILTVFIIAFGLLHLVKNTASKYFEVDANFEGGTTTDRSNGHAMS 60
           MHVGGITVDLNWFLQ + T+F+IA GLLHLVKNTASKYFEVDA+FEGG T       A  
Sbjct: 1   MHVGGITVDLNWFLQFVFTLFLIALGLLHLVKNTASKYFEVDAHFEGGATITADRNQA-- 58

Query: 61  SSVPSGSSDDLSCIVCGNPGSKKCSRCKSVRYCSSKCQTSHWQSGHKRKCKDIGKINSVQ 120
            +VPS  S   SC  CGN G+KKCSRCKSVRYCS++CQ  HW+SGHK KCK++ ++NSV+
Sbjct: 59  PAVPSMES---SCANCGNLGTKKCSRCKSVRYCSTECQEVHWKSGHKSKCKNLVRVNSVE 115

Query: 121 GPRSDFGSKISSTGGKNFSGIALVPTHGTSKVIKKPREILFPYDEFLKLFNWDKPGFAPC 180
             +++FG K S  GG+  SGIALVP++G +K+IKKP E+LFPYD+F+KL+NW+K  F PC
Sbjct: 116 NAKTNFGVKASGLGGRISSGIALVPSNGITKLIKKPTEVLFPYDKFIKLYNWNKGAFPPC 175

Query: 181 GLLNCGNSCFANVVLQCLTYTRPLVAYLLEKGHRKECGRDDWCFLCEFQTHVEKASQSSH 240
           GLLNCGNSCFANVVLQCLT+TRPLVAYLLE+GH++EC R+DWCFLCEFQ HVE+AS+SSH
Sbjct: 176 GLLNCGNSCFANVVLQCLTFTRPLVAYLLEEGHQRECRRNDWCFLCEFQVHVERASKSSH 235

Query: 241 PFSPMSILSRLPNIGGNLGYGRQEDAHEFMRFAIDTMQSICLDEFGGEKAVPPRSQETTL 300
           PFSPMSILSRLPNIGGNLGYG+QEDAHEFMRFAIDTMQS+CLDE+GGEKAV P  QETTL
Sbjct: 236 PFSPMSILSRLPNIGGNLGYGKQEDAHEFMRFAIDTMQSVCLDEYGGEKAVDPAFQETTL 295

Query: 301 IQHIFGGHLQSQVICSKCNNISNQYENMMDLTVEIHGDAASLEECLDQFTAKEWLDGDNM 360
           IQHIFGGHLQSQVIC+KCN ISNQ ENMMDLTVEIHGD+ SLE+CL+QFT +E L G+NM
Sbjct: 296 IQHIFGGHLQSQVICTKCNKISNQLENMMDLTVEIHGDSGSLEDCLEQFTDREQLHGENM 355

Query: 361 YKCDGCNDYVKAWKRLTVRRAPNILTIALKRFQSGRFGKLNKRVTFPETLDLSPYMSDGG 420
           Y+CDGCNDYVKAWKRLT+RRAPNILTIALKRFQSGRFGKLNKRV FPE+LDLSPY S+GG
Sbjct: 356 YRCDGCNDYVKAWKRLTIRRAPNILTIALKRFQSGRFGKLNKRVAFPESLDLSPYTSEGG 415

Query: 421 DRTDVYKLYAVVVHVDMLNASFFGHYICYVKDFRGHWYRVDDCKVTSVDLEEVLSQGAYM 480
           D TDVY+LYAVVVHVDMLNASFFGHYICY+KDF G+WYRVDDCKV SV+LEEVLSQGAYM
Sbjct: 416 DGTDVYRLYAVVVHVDMLNASFFGHYICYIKDFCGNWYRVDDCKVRSVELEEVLSQGAYM 475

Query: 481 LLYNRVSARPSYLVDTESSSSRKEEPSA-------VNAETEPKEVECSSTMESINPNSRS 533
           LLY+R+SARPS L   E +   +   +        V  E     VEC S +ESIN  S +
Sbjct: 476 LLYSRISARPSCLRTVEPAKELQPTENVGLGSCTNVKIECTNGRVECFSGVESINNTSAT 535

Query: 534 LSL 536
            SL
Sbjct: 536 ESL 538

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359476454|ref|XP_002271840.2| PREDICTED: ubiquitin carboxyl-terminal hydrolase 19-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|449486818|ref|XP_004157412.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 19-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449447371|ref|XP_004141442.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 19-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224089481|ref|XP_002308728.1| predicted protein [Populus trichocarpa] gi|222854704|gb|EEE92251.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224142061|ref|XP_002324377.1| predicted protein [Populus trichocarpa] gi|222865811|gb|EEF02942.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356509862|ref|XP_003523663.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 19-like [Glycine max] Back     alignment and taxonomy information
>gi|356554161|ref|XP_003545417.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 19-like [Glycine max] Back     alignment and taxonomy information
>gi|356563968|ref|XP_003550229.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 19-like [Glycine max] Back     alignment and taxonomy information
>gi|356518197|ref|XP_003527768.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 19-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query733
TAIR|locus:2046678672 UBP19 "AT2G24640" [Arabidopsis 0.901 0.983 0.542 4.1e-191
TAIR|locus:2124809631 UBP18 "AT4G31670" [Arabidopsis 0.817 0.949 0.566 1.5e-186
TAIR|locus:21219591008 UBP16 "ubiquitin-specific prot 0.503 0.366 0.482 8.1e-108
TAIR|locus:2168282731 UBP17 "AT5G65450" [Arabidopsis 0.537 0.538 0.479 1.5e-106
RGD|1305231 1325 Usp42 "ubiquitin specific pept 0.443 0.245 0.416 6.8e-73
UNIPROTKB|E2RHU7 1331 USP42 "Ubiquitin carboxyl-term 0.443 0.244 0.413 1.7e-71
UNIPROTKB|E1C4I0 1234 USP42 "Ubiquitin carboxyl-term 0.532 0.316 0.384 2e-70
DICTYBASE|DDB_G0274827 919 DDB_G0274827 "putative ubiquit 0.720 0.574 0.330 7e-70
UNIPROTKB|Q9P275 1121 USP36 "Ubiquitin carboxyl-term 0.476 0.311 0.401 1.6e-69
UNIPROTKB|E1B9W9 1333 USP42 "Ubiquitin carboxyl-term 0.443 0.243 0.413 2e-69
TAIR|locus:2046678 UBP19 "AT2G24640" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1852 (657.0 bits), Expect = 4.1e-191, P = 4.1e-191
 Identities = 373/687 (54%), Positives = 463/687 (67%)

Query:     1 MHVGGITVDLNWFLQLILTVFIIAFGLLHLVKNTASKYFEVDANFEGGTTTDRSNGHAMX 60
             MH  G+ VDLN F QLILT+F ++ GLL+ VK TA+KYFEV     GG   D      + 
Sbjct:     1 MHEVGLFVDLNSFTQLILTLFFVSIGLLYFVKRTAAKYFEVGGG-SGGFDRDHRRDFMVS 59

Query:    61 XXXXXXXXXXXXCIVCGNPGSKKCSRCKSVRYCSSKCQTSHWQSGHKRKCKDIGKINSVQ 120
                         C VCG   +KKCSRCKSVRYCS+ CQTS W+SGHK KCK     +S  
Sbjct:    60 DTAE--------CSVCGKATTKKCSRCKSVRYCSAACQTSDWKSGHKLKCKGFRSTDSSP 111

Query:   121 GPRSDFGSKISSTGGKNFSG---IALVPTHGTSKVIKKPREILFPYDEFLKLFNWDKPGF 177
               R D   + S  G ++ S    IALVP    SK   KP ++LFPY+ F++ +NWD+P  
Sbjct:   112 VRRDDIDFEASLFGNRSASKKTRIALVPQQSQSKATLKPTDVLFPYESFVRYYNWDRPIM 171

Query:   178 APCGLLNCGNSCFANVVLQCLTYTRPLVAYLLEKGHRKECGRDDWCFLCEFQTHVEKASQ 237
             APCGL NCGNSCFANVVLQCL++TRPLVAYLLE+GH++EC R+DWCFLCEF+ H+++A+ 
Sbjct:   172 APCGLTNCGNSCFANVVLQCLSWTRPLVAYLLERGHKRECRRNDWCFLCEFENHLDRANY 231

Query:   238 SSHPFSPMSILSRLPNIGGNLGYGRQEDAHEFMRFAIDTMQSICLDEFGGEKAVPPRSQE 297
             S  PFSPM+I+SRLPNIGGNLGYGRQEDAHE MRFAID MQS+CLDEFGGEK VPPR+QE
Sbjct:   232 SRFPFSPMNIISRLPNIGGNLGYGRQEDAHELMRFAIDMMQSVCLDEFGGEKVVPPRAQE 291

Query:   298 TTLIQHIFGGHLQSQVICSKCNNISNQYENMMDLTVEIHGDAASLEECLDQFTAKEWLDG 357
             TTLIQ+IFGG LQSQV C+ C+N+S+QYENMMDLTVEIHGDA SLEECLDQFTAKEWL G
Sbjct:   292 TTLIQYIFGGLLQSQVQCTACSNVSDQYENMMDLTVEIHGDAVSLEECLDQFTAKEWLQG 351

Query:   358 DNMYKCDGCNDYVKAWKRLTVRRAPNILTIALKRFQSGRFGKLNKRVTFPETLDLSPYMS 417
             DN+YKCD C+DYVKA KRL++R APNILTIALKRFQ GRFGKLNKR++FPET DL PYMS
Sbjct:   352 DNLYKCDRCDDYVKACKRLSIRCAPNILTIALKRFQGGRFGKLNKRISFPETFDLGPYMS 411

Query:   418 DGGDRTDVYKLYAVVVHVDMLNASFFGHYICYVKDFRGHWYRVDDCKVTSVDLEEVLSQG 477
              GG+ +DVYKLYAV+VH+DMLNASFFGHYICYVKDFRG+WYR+DD +V  V+LE+VLSQ 
Sbjct:   412 GGGEGSDVYKLYAVIVHLDMLNASFFGHYICYVKDFRGNWYRIDDSEVEKVELEDVLSQR 471

Query:   478 AYMLLYNRVSARPSYLVDTESSSSRKEEPSAVNAET-EPKEVECSSTMESINPNSRSLSL 536
             AYMLLY+RV  RPS L   ES   +K +   +N E+ +   VE S     +  N  S+S 
Sbjct:   472 AYMLLYSRVQPRPSNLRSEESQDEKKTD--TLNTESNQDGSVESSG----VGTNDTSVSS 525

Query:   537 PCDDF-SHLRVSSC-KSKSAGAIDPQAVPAHFKDTNVDNIESSSNGVFS--HES---HSS 589
              C+   SH       K  S  A  P +      D  VD ++S SN      H+S   H  
Sbjct:   526 LCNGIISHSEDPEYEKESSLSASVPVSEEGKEVDVKVDTVDSESNRSIDMEHDSGTDHQE 585

Query:   590 SFGLNSEDLRVDAMDVDTANAQSSSWDRQDFSNCNGKLSEAKRGIQDDMNIDDPETSLSV 649
                   ED  V+ + VD++    ++      +    + +E        +  +  +T  + 
Sbjct:   586 EEANGKEDPTVENLAVDSSCLDITTPSPSAATEFIPQENERSDTESKPLEKEHSDTESNK 645

Query:   650 PKAVPCLDSDSEAVLKDTEGMNIVKSE 676
             P     LDS+S+ + K+     ++ ++
Sbjct:   646 PLEKEHLDSESKPLEKEHSDTEMIDAQ 672
GO:0004197 "cysteine-type endopeptidase activity" evidence=ISS
GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM
GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA;ISS
GO:0008270 "zinc ion binding" evidence=IEA
TAIR|locus:2124809 UBP18 "AT4G31670" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2121959 UBP16 "ubiquitin-specific protease 16" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2168282 UBP17 "AT5G65450" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
RGD|1305231 Usp42 "ubiquitin specific peptidase 42" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E2RHU7 USP42 "Ubiquitin carboxyl-terminal hydrolase" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|E1C4I0 USP42 "Ubiquitin carboxyl-terminal hydrolase" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0274827 DDB_G0274827 "putative ubiquitin carboxyl-terminal hydrolase (UCH)" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|Q9P275 USP36 "Ubiquitin carboxyl-terminal hydrolase 36" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E1B9W9 USP42 "Ubiquitin carboxyl-terminal hydrolase 42" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9SJA1UBP19_ARATH3, ., 4, ., 1, 9, ., 1, 20.59280.80900.8824yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.190.963
3rd Layer3.4.19.120.946

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.VI.484.1
hypothetical protein (486 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query733
cd02661304 cd02661, Peptidase_C19E, A subfamily of Peptidase 1e-167
cd02660328 cd02660, Peptidase_C19D, A subfamily of Peptidase 2e-74
pfam00443313 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrol 2e-68
cd02257255 cd02257, Peptidase_C19, Peptidase C19 contains ubi 5e-62
cd02674230 cd02674, Peptidase_C19R, A subfamily of peptidase 7e-51
cd02667279 cd02667, Peptidase_C19K, A subfamily of Peptidase 2e-48
cd02659334 cd02659, peptidase_C19C, A subfamily of Peptidase 6e-48
cd02663300 cd02663, Peptidase_C19G, A subfamily of Peptidase 3e-42
cd02668324 cd02668, Peptidase_C19L, A subfamily of Peptidase 4e-38
cd02664327 cd02664, Peptidase_C19H, A subfamily of Peptidase 1e-29
COG5533415 COG5533, UBP5, Ubiquitin C-terminal hydrolase [Pos 8e-26
COG5077 1089 COG5077, COG5077, Ubiquitin carboxyl-terminal hydr 3e-25
cd02671332 cd02671, Peptidase_C19O, A subfamily of Peptidase 1e-24
cd02658311 cd02658, Peptidase_C19B, A subfamily of Peptidase 5e-24
COG5560823 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Po 6e-22
pfam13423296 pfam13423, UCH_1, Ubiquitin carboxyl-terminal hydr 2e-21
cd02662240 cd02662, Peptidase_C19F, A subfamily of Peptidase 1e-20
cd02657305 cd02657, Peptidase_C19A, A subfamily of Peptidase 3e-20
cd02669440 cd02669, Peptidase_C19M, A subfamily of Peptidase 3e-11
COG5560823 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Po 4e-11
pfam0175339 pfam01753, zf-MYND, MYND finger 7e-11
COG5207749 COG5207, UBP14, Isopeptidase T [Posttranslational 2e-10
cd02665228 cd02665, Peptidase_C19I, A subfamily of Peptidase 3e-10
cd02672268 cd02672, Peptidase_C19P, A subfamily of Peptidase 8e-05
pfam0443830 pfam04438, zf-HIT, HIT zinc finger 2e-04
cd02673245 cd02673, Peptidase_C19Q, A subfamily of Peptidase 4e-04
cd02666343 cd02666, Peptidase_C19J, A subfamily of Peptidase 5e-04
cd02670241 cd02670, Peptidase_C19N, A subfamily of Peptidase 5e-04
cd02257255 cd02257, Peptidase_C19, Peptidase C19 contains ubi 0.003
>gnl|CDD|239126 cd02661, Peptidase_C19E, A subfamily of Peptidase C19 Back     alignment and domain information 
 Score =  482 bits (1242), Expect = e-167
 Identities = 166/306 (54%), Positives = 206/306 (67%), Gaps = 4/306 (1%)

Query: 179 PCGLLNCGNSCFANVVLQCLTYTRPLVAYLLEKGHRKECGRDDWCFLCEFQTHVEKASQS 238
             GL N GN+CF N VLQCLT+T PL  YLL + H K+C  + +C +C  + HVE+A  S
Sbjct: 1   GAGLQNLGNTCFLNSVLQCLTHTPPLANYLLSREHSKDCCNEGFCMMCALEAHVERALAS 60

Query: 239 SHPFSPMSILSR-LPNIGGNLGYGRQEDAHEFMRFAIDTMQSICLDEFGGEKAVPPRSQE 297
           S P S   I S  L  I  +   GRQEDAHEF+R+ +D MQ  CLD F   KAV P SQE
Sbjct: 61  SGPGSAPRIFSSNLKQISKHFRIGRQEDAHEFLRYLLDAMQKACLDRFKKLKAVDPSSQE 120

Query: 298 TTLIQHIFGGHLQSQVICSKCNNISNQYENMMDLTVEIHGDAASLEECLDQFTAKEWLDG 357
           TTL+Q IFGG+L+SQV C  C ++SN Y+  +DL+++I G A SLE+ L+QFT  E LDG
Sbjct: 121 TTLVQQIFGGYLRSQVKCLNCKHVSNTYDPFLDLSLDIKG-ADSLEDALEQFTKPEQLDG 179

Query: 358 DNMYKCDGCNDYVKAWKRLTVRRAPNILTIALKRFQSGRFGKLNKRVTFPETLDLSPYMS 417
           +N YKC+ C   VKA K+LT+ RAPN+LTI LKRF + R GK+NK+++FPETLDLSPYMS
Sbjct: 180 ENKYKCERCKKKVKASKQLTIHRAPNVLTIHLKRFSNFRGGKINKQISFPETLDLSPYMS 239

Query: 418 DGGDRTDVYKLYAVVVHVDMLNASFFGHYICYVKDFRGHWYRVDDCKVTSVDLEEVLSQG 477
              D    YKLYAV+VH         GHY CYVK   G WY +DD KV+ V +E VLSQ 
Sbjct: 240 QPNDGPLKYKLYAVLVHSGFSP--HSGHYYCYVKSSNGKWYNMDDSKVSPVSIETVLSQK 297

Query: 478 AYMLLY 483
           AY+L Y
Sbjct: 298 AYILFY 303

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 304
>gnl|CDD|239125 cd02660, Peptidase_C19D, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|215922 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase Back     alignment and domain information
>gnl|CDD|239072 cd02257, Peptidase_C19, Peptidase C19 contains ubiquitinyl hydrolases Back     alignment and domain information
>gnl|CDD|239139 cd02674, Peptidase_C19R, A subfamily of peptidase C19 Back     alignment and domain information
>gnl|CDD|239132 cd02667, Peptidase_C19K, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239124 cd02659, peptidase_C19C, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239128 cd02663, Peptidase_C19G, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239133 cd02668, Peptidase_C19L, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239129 cd02664, Peptidase_C19H, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|227820 COG5533, UBP5, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|227409 COG5077, COG5077, Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|239136 cd02671, Peptidase_C19O, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239123 cd02658, Peptidase_C19B, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|227847 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|222118 pfam13423, UCH_1, Ubiquitin carboxyl-terminal hydrolase Back     alignment and domain information
>gnl|CDD|239127 cd02662, Peptidase_C19F, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239122 cd02657, Peptidase_C19A, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239134 cd02669, Peptidase_C19M, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|227847 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|201954 pfam01753, zf-MYND, MYND finger Back     alignment and domain information
>gnl|CDD|227532 COG5207, UBP14, Isopeptidase T [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|239130 cd02665, Peptidase_C19I, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239137 cd02672, Peptidase_C19P, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|203013 pfam04438, zf-HIT, HIT zinc finger Back     alignment and domain information
>gnl|CDD|239138 cd02673, Peptidase_C19Q, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239131 cd02666, Peptidase_C19J, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239135 cd02670, Peptidase_C19N, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239072 cd02257, Peptidase_C19, Peptidase C19 contains ubiquitinyl hydrolases Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 733
KOG1865545 consensus Ubiquitin carboxyl-terminal hydrolase [P 100.0
cd02661304 Peptidase_C19E A subfamily of Peptidase C19. Pepti 100.0
cd02663300 Peptidase_C19G A subfamily of Peptidase C19. Pepti 100.0
cd02660328 Peptidase_C19D A subfamily of Peptidase C19. Pepti 100.0
cd02668324 Peptidase_C19L A subfamily of Peptidase C19. Pepti 100.0
cd02664327 Peptidase_C19H A subfamily of Peptidase C19. Pepti 100.0
cd02671332 Peptidase_C19O A subfamily of Peptidase C19. Pepti 100.0
cd02667279 Peptidase_C19K A subfamily of Peptidase C19. Pepti 100.0
cd02657305 Peptidase_C19A A subfamily of Peptidase C19. Pepti 100.0
cd02659334 peptidase_C19C A subfamily of Peptidase C19. Pepti 100.0
cd02658311 Peptidase_C19B A subfamily of Peptidase C19. Pepti 100.0
cd02669440 Peptidase_C19M A subfamily of Peptidase C19. Pepti 100.0
COG5560823 UBP12 Ubiquitin C-terminal hydrolase [Posttranslat 100.0
COG5533415 UBP5 Ubiquitin C-terminal hydrolase [Posttranslati 100.0
cd02662240 Peptidase_C19F A subfamily of Peptidase C19. Pepti 100.0
COG5077 1089 Ubiquitin carboxyl-terminal hydrolase [Posttransla 100.0
cd02674230 Peptidase_C19R A subfamily of peptidase C19. Pepti 100.0
KOG1868653 consensus Ubiquitin C-terminal hydrolase [Posttran 100.0
KOG1866 944 consensus Ubiquitin carboxyl-terminal hydrolase [P 100.0
cd02666343 Peptidase_C19J A subfamily of Peptidase C19. Pepti 100.0
PF00443269 UCH: Ubiquitin carboxyl-terminal hydrolase; InterP 100.0
cd02665228 Peptidase_C19I A subfamily of Peptidase C19. Pepti 100.0
cd02673245 Peptidase_C19Q A subfamily of Peptidase C19. Pepti 100.0
KOG0944763 consensus Ubiquitin-specific protease UBP14 [Postt 100.0
KOG1867492 consensus Ubiquitin-specific protease [Posttransla 100.0
cd02257255 Peptidase_C19 Peptidase C19 contains ubiquitinyl h 100.0
KOG1873877 consensus Ubiquitin-specific protease [Posttransla 100.0
cd02672268 Peptidase_C19P A subfamily of Peptidase C19. Pepti 100.0
KOG4598 1203 consensus Putative ubiquitin-specific protease [Po 100.0
COG5207749 UBP14 Isopeptidase T [Posttranslational modificati 100.0
KOG1863 1093 consensus Ubiquitin carboxyl-terminal hydrolase [P 100.0
KOG1870842 consensus Ubiquitin C-terminal hydrolase [Posttran 100.0
PF13423295 UCH_1: Ubiquitin carboxyl-terminal hydrolase 100.0
cd02670241 Peptidase_C19N A subfamily of Peptidase C19. Pepti 99.98
KOG1864587 consensus Ubiquitin-specific protease [Posttransla 99.97
KOG1871420 consensus Ubiquitin-specific protease [Posttransla 99.96
KOG1872473 consensus Ubiquitin-specific protease [Posttransla 99.96
KOG2026442 consensus Spindle pole body protein - Sad1p [Cytos 99.91
KOG12751118 consensus PAB-dependent poly(A) ribonuclease, subu 99.79
PF15499275 Peptidase_C98: Ubiquitin-specific peptidase-like, 98.94
PF0175337 zf-MYND: MYND finger; InterPro: IPR002893 Zinc fin 98.66
KOG1710396 consensus MYND Zn-finger and ankyrin repeat protei 98.11
KOG3556724 consensus Familial cylindromatosis protein [Genera 97.25
KOG1864587 consensus Ubiquitin-specific protease [Posttransla 96.77
KOG3612588 consensus PHD Zn-finger protein [General function 95.86
KOG2061362 consensus Uncharacterized MYND Zn-finger protein [ 94.18
KOG2857157 consensus Predicted MYND Zn-finger protein/hormone 94.03
KOG1887806 consensus Ubiquitin carboxyl-terminal hydrolase [P 93.5
PF08715320 Viral_protease: Papain like viral protease; InterP 92.08
PF0443830 zf-HIT: HIT zinc finger; InterPro: IPR007529 Zinc 91.35
KOG3362156 consensus Predicted BBOX Zn-finger protein [Genera 90.24
PF1382455 zf-Mss51: Zinc-finger of mitochondrial splicing su 89.13
PLN03158396 methionine aminopeptidase; Provisional 87.68
PF05408193 Peptidase_C28: Foot-and-mouth virus L-proteinase; 87.61
>KOG1865 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=2e-76  Score=645.74  Aligned_cols=394  Identities=47%  Similarity=0.827  Sum_probs=349.1

Q ss_pred             ccccCccCCCCccccccccccccccccccccccccccCCCCCCCCCccccccCCCCC---CccccccccCCCCCccccCC
Q 004724           80 GSKKCSRCKSVRYCSSKCQTSHWQSGHKRKCKDIGKINSVQGPRSDFGSKISSTGGK---NFSGIALVPTHGTSKVIKKP  156 (733)
Q Consensus        80 ~~~~Cs~C~~~~YCs~~cQ~~~W~~~Hk~~C~~~~~~~~~~~~~~~~g~KaS~~G~k---s~s~i~lvP~~~~s~~~~~p  156 (733)
                      ...+|++|     ++..++..||..++...|.........+..........+..+++   +.......+.........+|
T Consensus        13 s~~~~s~~-----ss~~v~~~~~s~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~r~s~~~~~~~~~~~~~p   87 (545)
T KOG1865|consen   13 STTRCSRC-----SSESVNEGDMSFSSNRKCNEDQINSFSPLRSPRPDAAFSESQRKSGSPKSRLSNETRVDSDDGNAPP   87 (545)
T ss_pred             cccccccc-----ccccccccccccccccccccccccccCcccCCCCccccccccCccCCCCCCCccccccccCCCcCCc
Confidence            45678888     88999999999988888865543222221111111111111111   11222333333445677889


Q ss_pred             CccccCchhhhhcccCCCCCCCCCCcccCCCccchHHHHHHHhcCHHHHHHHHhcCCCccCCCCchHHHHHHHHHHHHhc
Q 004724          157 REILFPYDEFLKLFNWDKPGFAPCGLLNCGNSCFANVVLQCLTYTRPLVAYLLEKGHRKECGRDDWCFLCEFQTHVEKAS  236 (733)
Q Consensus       157 ~~~l~~~~~~~~~~~~~~~~~~p~GL~NlGNTCYlNSvLQ~L~~ip~fr~~Ll~~~~~~~~~~~~~~~l~~L~~lf~~l~  236 (733)
                      ++.|||++.+.  +.|.++...|+||+|+|||||+|||||||.++|||.+||+...|...|....+|++|+|+.++.+..
T Consensus        88 ~k~Lfp~e~~~--~~~~~~~~~~~GL~NlGNtCfaNsvlQcLt~T~PLv~yLls~~hs~~C~~~~~C~lc~~q~hi~~A~  165 (545)
T KOG1865|consen   88 AKVLFPYEKLP--LSSDRPAAVGAGLQNLGNTCFANSVLQCLTYTPPLVNYLLSREHSRSCHRAKFCMLCTFQAHITRAL  165 (545)
T ss_pred             chhccccceec--ccccccccCCcceecCCccHHHHHHHHHhcccHHHHHHHHHhhhhhhccccCeeeehHHHHHHHHHh
Confidence            99999999987  8999999999999999999999999999999999999999999999999999999999999999887


Q ss_pred             cCCC-CCChHHHHhhccccCCCCCCCCcCCHHHHHHHHHHHHhhhhhhhcCCCCCCCCCCcccccccceeceeEEeEEEe
Q 004724          237 QSSH-PFSPMSILSRLPNIGGNLGYGRQEDAHEFMRFAIDTMQSICLDEFGGEKAVPPRSQETTLIQHIFGGHLQSQVIC  315 (733)
Q Consensus       237 ~s~~-~isP~~ll~~L~~~~~~f~~g~QqDA~EFL~~LLd~L~e~l~~~~~~~~~~~~~~~~~siI~~lF~G~l~s~i~C  315 (733)
                      .+.. +++|..|+..|+.++.+|+.|+|+||||||++++|.|+..|+   ++....++..+++++|+++|+|.++++++|
T Consensus       166 ~~~g~pisP~~i~s~L~~I~~~f~~grQEDAHEFLr~~vd~mqk~cL---~g~~~~~~~sq~ttlv~~iFGG~LrS~vkC  242 (545)
T KOG1865|consen  166 HNPGHPISPSQILSNLRNISAHFGRGRQEDAHEFLRFTVDAMQKACL---PGHKQVDPRSQDTTLVHQIFGGYLRSQIKC  242 (545)
T ss_pred             cCCCCccChHHHHHhhhhhcccccCCchhhHHHHHHHHHHHHHHhhc---CCCccCCcccccceehhhhhccchhhceec
Confidence            7665 999999999999999999999999999999999999999987   677778888999999999999999999999


Q ss_pred             CCCCCccccccccccchhhccCCcccHHHHHHhcccceecCCCCCcccCCCCccceeEEEEEeecCCceEEEEEeeeecC
Q 004724          316 SKCNNISNQYENMMDLTVEIHGDAASLEECLDQFTAKEWLDGDNMYKCDGCNDYVKAWKRLTVRRAPNILTIALKRFQSG  395 (733)
Q Consensus       316 ~~C~~~s~~~E~f~~L~L~I~~~~~sLed~L~~~~~~E~L~g~n~y~C~~C~~~~~a~K~~~I~~lP~vLiI~LkRF~~~  395 (733)
                      ..|.+++.++|+.++|+|+|. +..+|+++|++|++.|.|+|+|+|+|++|++++.|.|+++|.++|+||+||||||+.+
T Consensus       243 ~~C~~vS~tyE~~~dltvei~-d~~sl~~AL~qFt~~E~L~gen~Y~C~~Ck~~v~A~K~lti~raPnVLTi~LKRF~~~  321 (545)
T KOG1865|consen  243 LHCKGVSDTYEPYLDLTLEIQ-DASSLQQALEQFTKPEKLDGENAYHCGRCKQKVPASKQLTIHRAPNVLTLHLKRFSNG  321 (545)
T ss_pred             ccCCCcccccccccceEEEec-cchhHHHHHHHhhhHHhhCCccccccchhhhhCcccceeeeecCCceEEEeeehhccC
Confidence            999999999999999999999 7899999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccceEecCCcCCCCCCcCCCCCCcceeEEEEEEEEecCCCCCCCCeEEEEEEcCCCCEEEEeCCceeeechhhhcC
Q 004724          396 RFGKLNKRVTFPETLDLSPYMSDGGDRTDVYKLYAVVVHVDMLNASFFGHYICYVKDFRGHWYRVDDCKVTSVDLEEVLS  475 (733)
Q Consensus       396 ~~~Ki~~~V~FP~~LdL~~~~~~~~~~~~~Y~L~aVV~H~G~~~ss~~GHY~a~vr~~~g~W~~fnDs~V~~v~~e~vl~  475 (733)
                      +..||++.|.||+.|||.+||+.+...+..|.|||||+|.|..  .++|||+||||...|+||+|||+.|+.++.+.|++
T Consensus       322 ~~gKI~K~I~fPE~LDl~PyMS~~~e~s~~Y~LYavlVH~g~~--~~~GHY~cYvks~~g~Wy~~DDS~V~~~~~~~VLs  399 (545)
T KOG1865|consen  322 TGGKISKPVSFPETLDLQPYMSQPNEGSTVYKLYAVLVHLGTS--CHSGHYFCYVKSQNGQWYKMDDSEVTQSSIESVLS  399 (545)
T ss_pred             cccccccccCCcccccccccccCCCCCCceEEEEEEEEecccc--ccCCceEEEEEcCCCceEEccCceeeeccccceec
Confidence            9999999999999999999999887789999999999999986  56799999999999999999999999999999999


Q ss_pred             CCcEEEEEEEc
Q 004724          476 QGAYMLLYNRV  486 (733)
Q Consensus       476 ~~AYiLfY~R~  486 (733)
                      ++||||||.|.
T Consensus       400 q~AYmLfY~R~  410 (545)
T KOG1865|consen  400 QQAYILFYARK  410 (545)
T ss_pred             ccceEEEEEee
Confidence            99999999997

>cd02661 Peptidase_C19E A subfamily of Peptidase C19 Back     alignment and domain information
>cd02663 Peptidase_C19G A subfamily of Peptidase C19 Back     alignment and domain information
>cd02660 Peptidase_C19D A subfamily of Peptidase C19 Back     alignment and domain information
>cd02668 Peptidase_C19L A subfamily of Peptidase C19 Back     alignment and domain information
>cd02664 Peptidase_C19H A subfamily of Peptidase C19 Back     alignment and domain information
>cd02671 Peptidase_C19O A subfamily of Peptidase C19 Back     alignment and domain information
>cd02667 Peptidase_C19K A subfamily of Peptidase C19 Back     alignment and domain information
>cd02657 Peptidase_C19A A subfamily of Peptidase C19 Back     alignment and domain information
>cd02659 peptidase_C19C A subfamily of Peptidase C19 Back     alignment and domain information
>cd02658 Peptidase_C19B A subfamily of Peptidase C19 Back     alignment and domain information
>cd02669 Peptidase_C19M A subfamily of Peptidase C19 Back     alignment and domain information
>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02662 Peptidase_C19F A subfamily of Peptidase C19 Back     alignment and domain information
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02674 Peptidase_C19R A subfamily of peptidase C19 Back     alignment and domain information
>KOG1868 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1866 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02666 Peptidase_C19J A subfamily of Peptidase C19 Back     alignment and domain information
>PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>cd02665 Peptidase_C19I A subfamily of Peptidase C19 Back     alignment and domain information
>cd02673 Peptidase_C19Q A subfamily of Peptidase C19 Back     alignment and domain information
>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1867 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases Back     alignment and domain information
>KOG1873 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02672 Peptidase_C19P A subfamily of Peptidase C19 Back     alignment and domain information
>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1870 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase Back     alignment and domain information
>cd02670 Peptidase_C19N A subfamily of Peptidase C19 Back     alignment and domain information
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1871 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2026 consensus Spindle pole body protein - Sad1p [Cytoskeleton] Back     alignment and domain information
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] Back     alignment and domain information
>PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase Back     alignment and domain information
>PF01753 zf-MYND: MYND finger; InterPro: IPR002893 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>KOG3556 consensus Familial cylindromatosis protein [General function prediction only] Back     alignment and domain information
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG3612 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG2061 consensus Uncharacterized MYND Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG2857 consensus Predicted MYND Zn-finger protein/hormone receptor interactor [Transcription] Back     alignment and domain information
>KOG1887 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF08715 Viral_protease: Papain like viral protease; InterPro: IPR014827 This family of viral proteases are similar to the papain protease and are required for proteolytic processing of the replicase polyprotein Back     alignment and domain information
>PF04438 zf-HIT: HIT zinc finger; InterPro: IPR007529 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>KOG3362 consensus Predicted BBOX Zn-finger protein [General function prediction only] Back     alignment and domain information
>PF13824 zf-Mss51: Zinc-finger of mitochondrial splicing suppressor 51 Back     alignment and domain information
>PLN03158 methionine aminopeptidase; Provisional Back     alignment and domain information
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query733
4fip_A476 Structure Of The Saga Ubp8(S144n)SGF11(1-72, Delta- 7e-36
3mhh_A476 Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE 3e-35
3m99_A471 Structure Of The Ubp8-Sgf11-Sgf73-Sus1 Saga Dub Mod 3e-35
2ibi_A374 Covalent Ubiquitin-Usp2 Complex Length = 374 2e-27
2hd5_A359 Usp2 In Complex With Ubiquitin Length = 359 2e-27
3v6c_A367 Crystal Structure Of Usp2 In Complex With Mutated U 3e-27
2y5b_A370 Structure Of Usp21 In Complex With Linear Diubiquit 1e-26
3i3t_A355 Crystal Structure Of Covalent Ubiquitin-usp21 Compl 1e-26
3mtn_A373 Usp21 In Complex With A Ubiquitin-based, Usp21-spec 2e-26
3nhe_A348 High Resolution Structure (1.26a) Of Usp2a In Compl 3e-26
2y6e_A367 Ubiquitin Specific Protease 4 Is Inhibited By Its U 3e-25
3n3k_A396 The Catalytic Domain Of Usp8 In Complex With A Usp8 2e-22
2gfo_A396 Structure Of The Catalytic Domain Of Human Ubiquiti 3e-21
2f1z_A522 Crystal Structure Of Hausp Length = 522 2e-14
1nbf_A353 Crystal Structure Of A Ubp-Family Deubiquitinating 8e-14
1nb8_A353 Structure Of The Catalytic Domain Of Usp7 (Hausp) L 6e-12
2ayn_A404 Structure Of Usp14, A Proteasome-Associated Deubiqu 3e-09
>pdb|4FIP|A Chain A, Structure Of The Saga Ubp8(S144n)SGF11(1-72, Delta-Znf)SUS1SGF73 Dub Module Length = 476 Back     alignment and structure 
Iteration: 1

 Score =  149 bits (375), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 108/333 (32%), Positives = 166/333 (49%), Gaps = 35/333 (10%)
Query: 181 GLLNCGNSCFANVVLQCLTYTRPLVAYLLEKGHRKECG--RDDWCFLCEFQTHV------ 232
           GL+N GN+CF + +LQCL +    + + + + H   C     D CF C     V      
Sbjct: 143 GLINMGNTCFMSSILQCLIHNPYFIRHSMSQIHSNNCKVRSPDKCFSCALDKIVHELYGA 202
Query: 233 ---EKASQSSHPFSPMS----ILSRLPNIGGNLGYGRQEDAHEFMRFAIDTM-QSICLDE 284
              ++AS SS   +  +    +L+    I  NL    Q+DAHEF +F I+ + QS  LD 
Sbjct: 203 LNTKQASSSSTSTNRQTGFIYLLTCAWKINQNLAGYSQQDAHEFWQFIINQIHQSYVLDL 262
Query: 285 FGGEKAVPPRSQETTLIQH-IFGGHLQSQVICSKC-NNISNQYENMMDLTVEIHGDAASL 342
              ++     +++   I H +F G L+S ++C  C NN     +  +DL+++I  D   L
Sbjct: 263 PNAKEVSRANNKQCECIVHTVFEGSLESSIVCPGCQNNSKTTIDPFLDLSLDI-KDKKKL 321
Query: 343 EECLDQFTAKEWLDGDNMYKCDGCNDYVKAWKRLTVRRAPNILTIALKRFQ---SGRFGK 399
            ECLD F  KE L   N Y C  CN    A K+L + + P++L + LKRF+   +G   K
Sbjct: 322 YECLDSFHKKEQLKDFN-YHCGECNSTQDAIKQLGIHKLPSVLVLQLKRFEHLLNGSNRK 380
Query: 400 LNKRVTFPETLDLSPY--------MSDGGDRTDV-YKLYAVVVHVDMLNASFFGHYICYV 450
           L+  + FP  L++  Y         S+ G   D+ Y+L  +V H   +N    GHYI + 
Sbjct: 381 LDDFIEFPTYLNMKNYCSTKEKDKHSENGKVPDIIYELIGIVSHKGTVNE---GHYIAFC 437
Query: 451 KDFRGHWYRVDDCKVTSVDLEEVLSQGAYMLLY 483
           K   G W++ +D  V+S+  EEVL + AY+L Y
Sbjct: 438 KISGGQWFKFNDSMVSSISQEEVLKEQAYLLFY 470
>pdb|3MHH|A Chain A, Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE Length = 476 Back     alignment and structure
>pdb|3M99|A Chain A, Structure Of The Ubp8-Sgf11-Sgf73-Sus1 Saga Dub Module Length = 471 Back     alignment and structure
>pdb|2IBI|A Chain A, Covalent Ubiquitin-Usp2 Complex Length = 374 Back     alignment and structure
>pdb|2HD5|A Chain A, Usp2 In Complex With Ubiquitin Length = 359 Back     alignment and structure
>pdb|3V6C|A Chain A, Crystal Structure Of Usp2 In Complex With Mutated Ubiquitin Length = 367 Back     alignment and structure
>pdb|2Y5B|A Chain A, Structure Of Usp21 In Complex With Linear Diubiquitin-Aldehyde Length = 370 Back     alignment and structure
>pdb|3I3T|A Chain A, Crystal Structure Of Covalent Ubiquitin-usp21 Complex Length = 355 Back     alignment and structure
>pdb|3MTN|A Chain A, Usp21 In Complex With A Ubiquitin-based, Usp21-specific Inhibitor Length = 373 Back     alignment and structure
>pdb|3NHE|A Chain A, High Resolution Structure (1.26a) Of Usp2a In Complex With Ubiquitin Length = 348 Back     alignment and structure
>pdb|2Y6E|A Chain A, Ubiquitin Specific Protease 4 Is Inhibited By Its Ubiquitin- Like Domain Length = 367 Back     alignment and structure
>pdb|3N3K|A Chain A, The Catalytic Domain Of Usp8 In Complex With A Usp8 Specific Inhibitor Length = 396 Back     alignment and structure
>pdb|2GFO|A Chain A, Structure Of The Catalytic Domain Of Human Ubiquitin Carboxyl-terminal Hydrolase 8 Length = 396 Back     alignment and structure
>pdb|2F1Z|A Chain A, Crystal Structure Of Hausp Length = 522 Back     alignment and structure
>pdb|1NBF|A Chain A, Crystal Structure Of A Ubp-Family Deubiquitinating Enzyme In Isolation And In Complex With Ubiquitin Aldehyde Length = 353 Back     alignment and structure
>pdb|1NB8|A Chain A, Structure Of The Catalytic Domain Of Usp7 (Hausp) Length = 353 Back     alignment and structure
>pdb|2AYN|A Chain A, Structure Of Usp14, A Proteasome-Associated Deubiquitinating Enzyme Length = 404 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query733
3mhs_A476 Ubiquitin carboxyl-terminal hydrolase 8; multi-pro 1e-115
3nhe_A348 Ubiquitin carboxyl-terminal hydrolase 2; cysteine 1e-112
2gfo_A396 Ubiquitin carboxyl-terminal hydrolase 8; protease, 1e-105
2y6e_A367 Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 1e-100
1nb8_A353 Ubiquitin carboxyl-terminal hydrolase 7; UBP, deub 2e-96
2f1z_A522 Ubiquitin carboxyl-terminal hydrolase 7; hausp, US 6e-94
3i3t_A355 Ubiquitin carboxyl-terminal hydrolase 21; hydrolas 1e-85
2ayn_A404 Ubiquitin carboxyl-terminal hydrolase 14; deubiqui 5e-72
3ihp_A854 Ubiquitin carboxyl-terminal hydrolase 5; hydrolase 1e-31
3ihp_A854 Ubiquitin carboxyl-terminal hydrolase 5; hydrolase 1e-10
1vjv_A415 Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, 1e-26
2dj8_A60 Protein CBFA2T1; zinc finger MYND domain, protein 7e-16
2od1_A60 Protein CBFA2T1; zinc finger, cross-braced topolog 8e-15
2jw6_A52 Deformed epidermal autoregulatory factor 1 homolo; 9e-15
2odd_A64 Protein CBFA2T1; MYND zinc finger, cross-braced to 1e-14
2d8q_A70 BLU protein, zinc finger MYND domain containing pr 2e-14
3n71_A490 Histone lysine methyltransferase SMYD1; heart deve 1e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-05
2yqq_A56 Zinc finger HIT domain-containing protein 3; struc 2e-04
3qww_A433 SET and MYND domain-containing protein 2; methyltr 3e-04
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 3m99_A Length = 476 Back     alignment and structure
 Score =  354 bits (910), Expect = e-115
 Identities = 116/485 (23%), Positives = 193/485 (39%), Gaps = 60/485 (12%)

Query: 36  SKYFEVDANFEGGTTTDRSNGHAMSSSVPSGS-SDDLSCIVCGNPGSKK---CSRCKSVR 91
            + F+ + + +G   T  +  + ++ SVP     + + C  C    S     C +C    
Sbjct: 13  QQVFQNEKSKDGVLKTCNAARYILNHSVPKEKFLNTMKCGTCHEINSGATFMCLQCGFCG 72

Query: 92  YCSSKCQTSHWQSGHKRKCKDIGKINSVQGPRSDFGSKISSTGGKNFSGIALVPTHGTSK 151
             +     SH +        +                  S+ G             G   
Sbjct: 73  CWNHSHFLSHSKQIGHIFGIN------------------SNNGL--LFCFKCEDYIGNID 112

Query: 152 VIKKPREILFPYDEFLKLFNWDKPGFAPC-GLLNCGNSCFANVVLQCLTYTRPLVAYLLE 210
           +I       +  D   K             GL+N G++CF + +LQCL +    + + + 
Sbjct: 113 LINDAILAKYWDDVCTKTMVPSMERRDGLSGLINMGSTCFMSSILQCLIHNPYFIRHSMS 172

Query: 211 KGHRKECGRD--DWCFLCEFQTHV-------------EKASQSSHPFSPMSILSRLPNIG 255
           + H   C     D CF C     V               ++ ++     + +L+    I 
Sbjct: 173 QIHSNNCKVRSPDKCFSCALDKIVHELYGALNTKQASSSSTSTNRQTGFIYLLTCAWKIN 232

Query: 256 GNLGYGRQEDAHEFMRFAIDTMQSICLDEFGGEKAVPPRS--QETTLIQHIFGGHLQSQV 313
            NL    Q+DAHEF +F I+ +    + +    K V   +  Q   ++  +F G L+S +
Sbjct: 233 QNLAGYSQQDAHEFWQFIINQIHQSYVLDLPNAKEVSRANNKQCECIVHTVFEGSLESSI 292

Query: 314 ICSKCNNIS-NQYENMMDLTVEIHGDAASLEECLDQFTAKEWLDGDNMYKCDGCNDYVKA 372
           +C  C N S    +  +DL+++I      L ECLD F  KE L   N Y C  CN    A
Sbjct: 293 VCPGCQNNSKTTIDPFLDLSLDIKD-KKKLYECLDSFHKKEQLKDFN-YHCGECNSTQDA 350

Query: 373 WKRLTVRRAPNILTIALKRFQ---SGRFGKLNKRVTFPETLDLSPYMSDGGDRTD----- 424
            K+L + + P++L + LKRF+   +G   KL+  + FP  L++  Y S            
Sbjct: 351 IKQLGIHKLPSVLVLQLKRFEHLLNGSNRKLDDFIEFPTYLNMKNYCSTKEKDKHSENGK 410

Query: 425 ----VYKLYAVVVHVDMLNASFFGHYICYVKDFRGHWYRVDDCKVTSVDLEEVLSQGAYM 480
               +Y+L  +V H   +N    GHYI + K   G W++ +D  V+S+  EEVL + AY+
Sbjct: 411 VPDIIYELIGIVSHKGTVNE---GHYIAFCKISGGQWFKFNDSMVSSISQEEVLKEQAYL 467

Query: 481 LLYNR 485
           L Y  
Sbjct: 468 LFYTI 472
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} PDB: 2hd5_A 2ibi_A Length = 348 Back     alignment and structure
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A Length = 396 Back     alignment and structure
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens} Length = 367 Back     alignment and structure
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A Length = 353 Back     alignment and structure
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Length = 522 Back     alignment and structure
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} PDB: 2y5b_A 3mtn_A Length = 355 Back     alignment and structure
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A Length = 404 Back     alignment and structure
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Length = 854 Back     alignment and structure
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Length = 854 Back     alignment and structure
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9 Length = 415 Back     alignment and structure
>2dj8_A Protein CBFA2T1; zinc finger MYND domain, protein MTG8, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.85.1.1 Length = 60 Back     alignment and structure
>2od1_A Protein CBFA2T1; zinc finger, cross-braced topology, metal binding protein; NMR {Homo sapiens} Length = 60 Back     alignment and structure
>2jw6_A Deformed epidermal autoregulatory factor 1 homolo; zinc binding domain, transcription, alternative splicing, DI mutation, DNA-binding; NMR {Homo sapiens} SCOP: g.85.1.1 Length = 52 Back     alignment and structure
>2odd_A Protein CBFA2T1; MYND zinc finger, cross-braced topology, poly-proline, proline-tryptophan interaction, metal binding protein; NMR {Homo sapiens} Length = 64 Back     alignment and structure
>2d8q_A BLU protein, zinc finger MYND domain containing protein 10; zmynd10, ZF-MYND, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.1 PDB: 2dan_A Length = 70 Back     alignment and structure
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Length = 490 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 56 Back     alignment and structure
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Length = 433 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query733
2y6e_A367 Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 100.0
3nhe_A348 Ubiquitin carboxyl-terminal hydrolase 2; cysteine 100.0
2gfo_A396 Ubiquitin carboxyl-terminal hydrolase 8; protease, 100.0
3i3t_A355 Ubiquitin carboxyl-terminal hydrolase 21; hydrolas 100.0
1nb8_A353 Ubiquitin carboxyl-terminal hydrolase 7; UBP, deub 100.0
2ayn_A404 Ubiquitin carboxyl-terminal hydrolase 14; deubiqui 100.0
3mhs_A476 Ubiquitin carboxyl-terminal hydrolase 8; multi-pro 100.0
1vjv_A415 Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, 100.0
2f1z_A522 Ubiquitin carboxyl-terminal hydrolase 7; hausp, US 100.0
3ihp_A854 Ubiquitin carboxyl-terminal hydrolase 5; hydrolase 100.0
2vhf_A374 Ubiquitin carboxyl-terminal hydrolase CYLD; cytoki 99.96
2d8q_A70 BLU protein, zinc finger MYND domain containing pr 98.84
2dj8_A60 Protein CBFA2T1; zinc finger MYND domain, protein 98.79
2od1_A60 Protein CBFA2T1; zinc finger, cross-braced topolog 98.75
2odd_A64 Protein CBFA2T1; MYND zinc finger, cross-braced to 98.71
2jw6_A52 Deformed epidermal autoregulatory factor 1 homolo; 98.7
3qww_A433 SET and MYND domain-containing protein 2; methyltr 97.66
3qwp_A429 SET and MYND domain-containing protein 3; SMYD3,SE 97.61
3n71_A490 Histone lysine methyltransferase SMYD1; heart deve 97.45
3mp2_A211 Non-structural protein 3; papain-like protease, TG 95.49
2fe8_A315 PP1AB, ORF1AB, replicase polyprotein 1AB; protease 94.12
2yqq_A56 Zinc finger HIT domain-containing protein 3; struc 93.67
1x4s_A59 Protein FON, zinc finger HIT domain containing pro 93.17
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=2.4e-61  Score=528.56  Aligned_cols=311  Identities=26%  Similarity=0.487  Sum_probs=265.7

Q ss_pred             CCCCcccCCCccchHHHHHHHhcCHHHHHHHHhcCCCccCC-----CCchHHHHHHHHHHHHhccC-CCCCChHHHHhhc
Q 004724          178 APCGLLNCGNSCFANVVLQCLTYTRPLVAYLLEKGHRKECG-----RDDWCFLCEFQTHVEKASQS-SHPFSPMSILSRL  251 (733)
Q Consensus       178 ~p~GL~NlGNTCYlNSvLQ~L~~ip~fr~~Ll~~~~~~~~~-----~~~~~~l~~L~~lf~~l~~s-~~~isP~~ll~~L  251 (733)
                      +++||.|+||||||||+||+|+++|+|+++|+...+.....     .....++.+|+.+|..|+.+ ...++|..|+..+
T Consensus         7 g~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~i~P~~~~~~l   86 (367)
T 2y6e_A            7 GLCGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRDAHVAPRMFKTQV   86 (367)
T ss_dssp             TCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTCGGGGCCSSCTTSCTTHHHHHHHHHHHHHTSSSCSEECCHHHHHHH
T ss_pred             CCcCCccCCcchHHHHHHHHHHCCHHHHHHHHcCchhhhccccCCCCcchHHHHHHHHHHHHHHcCCCCCcCHHHHHHHH
Confidence            34999999999999999999999999999999765433221     12346889999999999865 4678999999999


Q ss_pred             cccCCCCCCCCcCCHHHHHHHHHHHHhhhhhhhcCCCCC-C-CCC----------------CcccccccceeceeEEeEE
Q 004724          252 PNIGGNLGYGRQEDAHEFMRFAIDTMQSICLDEFGGEKA-V-PPR----------------SQETTLIQHIFGGHLQSQV  313 (733)
Q Consensus       252 ~~~~~~f~~g~QqDA~EFL~~LLd~L~e~l~~~~~~~~~-~-~~~----------------~~~~siI~~lF~G~l~s~i  313 (733)
                      +...+.|..++||||||||.+||+.||+++......... . ...                ....++|.++|+|++++++
T Consensus        87 ~~~~~~f~~~~QqDA~Efl~~LLd~L~~~l~~~~~~~~~~~~~~~g~~~~~~a~~~w~~~~~~~~s~i~~~F~G~l~s~~  166 (367)
T 2y6e_A           87 GRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDAVVAKEAWENHRLRNDSVIVDTFHGLFKSTL  166 (367)
T ss_dssp             HHHCGGGCSSSCCCHHHHHHHHHHHHHHHTCSCSSCCCCCCCCCCSCCHHHHHHHHHHHHHHHCCSHHHHHHCEEEEEEE
T ss_pred             HHhhhhcCCCCCCCHHHHHHHHHHHHHHHHHhhccCCccccccccCCchhHHHHHHHHHHHHhcCCccccccCcEEeeeE
Confidence            999999999999999999999999999886432111000 0 000                0135789999999999999


Q ss_pred             EeCCCCCccccccccccchhhccCC------------------cccHHHHHHhcccceecCCCCCcccCCCCccceeEEE
Q 004724          314 ICSKCNNISNQYENMMDLTVEIHGD------------------AASLEECLDQFTAKEWLDGDNMYKCDGCNDYVKAWKR  375 (733)
Q Consensus       314 ~C~~C~~~s~~~E~f~~L~L~I~~~------------------~~sLed~L~~~~~~E~L~g~n~y~C~~C~~~~~a~K~  375 (733)
                      +|..|++++.++|+|++|+|+|+..                  ..+|++||+.|+.+|.|+++++|.|++|++++.+.|+
T Consensus       167 ~C~~C~~~s~~~e~f~~LsL~ip~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~f~~~E~l~~~~~~~C~~C~~~~~a~K~  246 (367)
T 2y6e_A          167 VCPECAKVSVTFDPFCYLTLPLPLKKDRVMEGPMLQPQKKKKTTVALRDCIELFTTMETLGEHDPWYCPNCKKHQQATKK  246 (367)
T ss_dssp             ECTTTCCEEEEEEEESSEEEECCC-------------------CEEHHHHHHHHTSCEECCC-CCEEETTTTEEECCEEE
T ss_pred             EeCCCCCEeeeEccCeeEEeeCCCCcCCcceeeeeccccccCCCCCHHHHHHHhcccccCCCCCCccCCCCCCCceEEEE
Confidence            9999999999999999999999742                  3689999999999999999999999999999999999


Q ss_pred             EEeecCCceEEEEEeeeecCc--cccccceEecCC-cCCCCCCcCCCCCCcceeEEEEEEEEecCCCCCCCCeEEEEEEc
Q 004724          376 LTVRRAPNILTIALKRFQSGR--FGKLNKRVTFPE-TLDLSPYMSDGGDRTDVYKLYAVVVHVDMLNASFFGHYICYVKD  452 (733)
Q Consensus       376 ~~I~~lP~vLiI~LkRF~~~~--~~Ki~~~V~FP~-~LdL~~~~~~~~~~~~~Y~L~aVV~H~G~~~ss~~GHY~a~vr~  452 (733)
                      ..|++||+||+||||||.++.  ..|+++.|.||. .|||.+|+.........|+|+|||+|.|...+   |||+||+|.
T Consensus       247 ~~i~~lP~vL~i~LkRF~~~~~~~~K~~~~v~fp~~~Ldl~~~~~~~~~~~~~Y~L~avv~H~G~~~~---GHY~a~~~~  323 (367)
T 2y6e_A          247 FDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFPIRGLNMSEFVCNLSARPYVYDLIAVSNHYGAMGV---GHYTAYAKN  323 (367)
T ss_dssp             EEEEECCSEEEEEEECEEECSSCEEECCCCEECCSSCEECGGGBSCSSSCCCEEEEEEEEEEECSSSS---CEEEEEEEC
T ss_pred             EEEecCCcEEEEEEeCeeecCccceecCceEEecCCcCChhhhccCCCCCCceEEEEEEeecCCCCCC---CeeeEEEEc
Confidence            999999999999999998764  379999999996 79999999877667789999999999997544   999999998


Q ss_pred             C-CCCEEEEeCCceeeechhhhcCCCcEEEEEEEcCCCCC
Q 004724          453 F-RGHWYRVDDCKVTSVDLEEVLSQGAYMLLYNRVSARPS  491 (733)
Q Consensus       453 ~-~g~W~~fnDs~V~~v~~e~vl~~~AYiLfY~R~~~~~~  491 (733)
                      . +++||+|||+.|+++++++|++..||||||+|++..++
T Consensus       324 ~~~~~W~~fnD~~V~~v~~~~v~~~~aYiLfY~r~~~~~~  363 (367)
T 2y6e_A          324 KLNGKWYYFDDSNVSLASEDQIVTKAAYVLFYQRRDDEFY  363 (367)
T ss_dssp             TTTCCEEEEETTEEEECCGGGTSSTTEEEEEEEECCC---
T ss_pred             CCCCeEEEECCCCceECCHHHcCCCCcEEEEEEEcCCCCC
Confidence            5 78999999999999999999999999999999976543
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A Back     alignment and structure
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A Back     alignment and structure
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A Back     alignment and structure
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A Back     alignment and structure
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A Back     alignment and structure
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A Back     alignment and structure
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9 Back     alignment and structure
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Back     alignment and structure
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Back     alignment and structure
>2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling, linkage specificity, deubiquitinating enzyme, Lys63- linked, anti-oncogene; 2.8A {Homo sapiens} Back     alignment and structure
>2d8q_A BLU protein, zinc finger MYND domain containing protein 10; zmynd10, ZF-MYND, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.1 PDB: 2dan_A Back     alignment and structure
>2dj8_A Protein CBFA2T1; zinc finger MYND domain, protein MTG8, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.85.1.1 Back     alignment and structure
>2od1_A Protein CBFA2T1; zinc finger, cross-braced topology, metal binding protein; NMR {Homo sapiens} Back     alignment and structure
>2odd_A Protein CBFA2T1; MYND zinc finger, cross-braced topology, poly-proline, proline-tryptophan interaction, metal binding protein; NMR {Homo sapiens} Back     alignment and structure
>2jw6_A Deformed epidermal autoregulatory factor 1 homolo; zinc binding domain, transcription, alternative splicing, DI mutation, DNA-binding; NMR {Homo sapiens} SCOP: g.85.1.1 Back     alignment and structure
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Back     alignment and structure
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Back     alignment and structure
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Back     alignment and structure
>3mp2_A Non-structural protein 3; papain-like protease, TGEV, hydrolase; 2.50A {Porcine transmissible gastroenteritiscoronavirus} Back     alignment and structure
>2fe8_A PP1AB, ORF1AB, replicase polyprotein 1AB; protease, hydrolase; 1.85A {Sars coronavirus} PDB: 3e9s_A* 3mj5_A* Back     alignment and structure
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.2 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 733
d2gfoa1348 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal h 1e-55
d2hd5a1336 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hy 4e-52
d2ayna1383 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hy 3e-45
d1nbfa_347 d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 2e-39
d1vjva_397 d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6e-30
d2jw6a138 g.85.1.1 (A:503-540) Zinc finger MYND domain-conta 3e-13
d2dj8a147 g.85.1.1 (A:8-54) Zinc finger MYND domain-containi 7e-13
d2dana147 g.85.1.1 (A:8-54) Zinc finger MYND domain-containi 3e-12
>d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]} Length = 348 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 8
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  192 bits (487), Expect = 1e-55
 Identities = 79/340 (23%), Positives = 135/340 (39%), Gaps = 34/340 (10%)

Query: 175 PGFAPCGLLNCGNSCFANVVLQCLTYTRPLVAYLLEKGHRKECGRDDW-----CFLCEFQ 229
           P     GL N GN+C+ N +LQCL     L  Y     ++ +  R +          EF 
Sbjct: 13  PAL--TGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFG 70

Query: 230 THVEKASQSSH-PFSPMSILSRLPNIGGNLGYGRQEDAHEFMRFAIDTMQSICLDEFGGE 288
             ++      +   SP      +  I        Q+D+ E + F +D +          +
Sbjct: 71  IIMKALWTGQYRYISPKDFKITIGKINDQFAGYSQQDSQELLLFLMDGLHEDLNKADNRK 130

Query: 289 KAVPPRSQ------------------ETTLIQHIFGGHLQSQVICSKCNNISNQYENMMD 330
           +     +                     ++I  +F G  +S V C  C+  S  +E  M 
Sbjct: 131 RYKEENNDHLDDFKAAEHAWQKHKQLNESIIVALFQGQFKSTVQCLTCHKKSRTFEAFMY 190

Query: 331 LTVEIHG-DAASLEECLDQFTAKEWLDGDNMYKCDGCNDYVKAWKRLTVRRAPNILTIAL 389
           L++ +      +L++CL  F+ +E L  +N + C  C     + K++ + + P +L + L
Sbjct: 191 LSLPLASTSKCTLQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHL 250

Query: 390 KRFQ---SGRFGKLNKRVTFPETLDLSPYMSDGGDRTDVYKLYAVVVHVDMLNASFFGHY 446
           KRF      +           E LDLS Y+    +    Y L++V  H   L+    GHY
Sbjct: 251 KRFSYDGRWKQKLQTSVDFPLENLDLSQYVIGPKNNLKKYNLFSVSNHYGGLDG---GHY 307

Query: 447 ICYVKDF-RGHWYRVDDCKVTSVDLEEVLSQGAYMLLYNR 485
             Y K+  R  W++ DD +V+ + +  V S  AY+L Y  
Sbjct: 308 TAYCKNAARQRWFKFDDHEVSDISVSSVKSSAAYILFYTS 347
>d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 336 Back     information, alignment and structure
>d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]} Length = 383 Back     information, alignment and structure
>d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]} Length = 347 Back     information, alignment and structure
>d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 397 Back     information, alignment and structure
>d2jw6a1 g.85.1.1 (A:503-540) Zinc finger MYND domain-containing protein 2, MTG8 {Human (Homo sapiens) [TaxId: 9606]} Length = 38 Back     information, alignment and structure
>d2dj8a1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing protein 2, MTG8 {Human (Homo sapiens) [TaxId: 9606]} Length = 47 Back     information, alignment and structure
>d2dana1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing protein 10, ZMYND10 {Human (Homo sapiens) [TaxId: 9606]} Length = 47 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query733
d1nbfa_347 Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAU 100.0
d2ayna1383 Ubiquitin carboxyl-terminal hydrolase 14 {Human (H 100.0
d2gfoa1348 Ubiquitin carboxyl-terminal hydrolase 8 {Human (Ho 100.0
d2hd5a1336 Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Hum 100.0
d1vjva_397 Ubiquitin carboxyl-terminal hydrolase 6 {Baker's y 100.0
d2dana147 Zinc finger MYND domain-containing protein 10, ZMY 99.07
d2jw6a138 Zinc finger MYND domain-containing protein 2, MTG8 99.05
d2dj8a147 Zinc finger MYND domain-containing protein 2, MTG8 99.0
d1x4sa146 Zinc finger HIT domain containing protein 2, ZNHIT 86.78
>d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.8e-54  Score=464.57  Aligned_cols=294  Identities=27%  Similarity=0.417  Sum_probs=254.3

Q ss_pred             CCCCCCCCcccCCCccchHHHHHHHhcCHHHHHHHHhcCCCccCCCCchHHHHHHHHHHHHhccCCCCCChHHHHhhccc
Q 004724          174 KPGFAPCGLLNCGNSCFANVVLQCLTYTRPLVAYLLEKGHRKECGRDDWCFLCEFQTHVEKASQSSHPFSPMSILSRLPN  253 (733)
Q Consensus       174 ~~~~~p~GL~NlGNTCYlNSvLQ~L~~ip~fr~~Ll~~~~~~~~~~~~~~~l~~L~~lf~~l~~s~~~isP~~ll~~L~~  253 (733)
                      .||+  +||.|+||||||||+||+|+++|+|+++++.......  ....+++++|+.+|..|..+..++.|..++..+..
T Consensus         3 ~~G~--vGL~NlGNTCy~NSvLQ~L~~~~~f~~~i~~~~~~~~--~~~~~~~~~l~~lf~~l~~~~~~~~~~~~~~~~~~   78 (347)
T d1nbfa_           3 HTGY--VGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEGD--DSSKSVPLALQRVFYELQHSDKPVGTKKLTKSFGW   78 (347)
T ss_dssp             SSSC--CCBCCCSSCHHHHHHHHHHHTSHHHHHHHHTSCCTTC--CTTTCHHHHHHHHHHHHHHCSSCBCCHHHHHHTTC
T ss_pred             CCCC--cCCeeCCcchHHHHHHHHHHcCHHHHHHHHhCCccCC--cccchHHHHHHHHHHHHhcCCCCcChHHHHHhhch
Confidence            4666  9999999999999999999999999999987654433  23446888999999999988889999999888753


Q ss_pred             cCCCCCCCCcCCHHHHHHHHHHHHhhhhhhhcCCCCCCCCCCcccccccceeceeEEeEEEeCCCCCccccccccccchh
Q 004724          254 IGGNLGYGRQEDAHEFMRFAIDTMQSICLDEFGGEKAVPPRSQETTLIQHIFGGHLQSQVICSKCNNISNQYENMMDLTV  333 (733)
Q Consensus       254 ~~~~f~~g~QqDA~EFL~~LLd~L~e~l~~~~~~~~~~~~~~~~~siI~~lF~G~l~s~i~C~~C~~~s~~~E~f~~L~L  333 (733)
                        ..|..+.||||+|||..||+.|++++...           ...++|.++|+|.+.+.++|..|++.+.+.++|+.|+|
T Consensus        79 --~~~~~~~qqDa~Ef~~~ll~~l~~~~~~~-----------~~~~~i~~lF~g~~~~~~~C~~C~~~s~~~e~f~~l~L  145 (347)
T d1nbfa_          79 --ETLDSFMQHDVQELCRVLLDNVENKMKGT-----------CVEGTIPKLFRGKMVSYIQCKEVDYRSDRREDYYDIQL  145 (347)
T ss_dssp             --CGGGGGSCBCHHHHHHHHHHHHHHHHTTS-----------TTTTHHHHHHCEEEEEEEEESSSCCEEEEEEEESSEEE
T ss_pred             --hhcchHHHHHHHHHHHHHHHHHHHHHhhc-----------cccccccceeceEEEEeEEeCCccceeeeecccccccc
Confidence              45778899999999999999999876432           23467999999999999999999999999999999999


Q ss_pred             hccCCcccHHHHHHhcccceecCCCCCcccCCCCccceeEEEEEeecCCceEEEEEeeeecC----ccccccceEecCCc
Q 004724          334 EIHGDAASLEECLDQFTAKEWLDGDNMYKCDGCNDYVKAWKRLTVRRAPNILTIALKRFQSG----RFGKLNKRVTFPET  409 (733)
Q Consensus       334 ~I~~~~~sLed~L~~~~~~E~L~g~n~y~C~~C~~~~~a~K~~~I~~lP~vLiI~LkRF~~~----~~~Ki~~~V~FP~~  409 (733)
                      +++. ..+++++|..++..|.+++++.+.|..| +...+.|+..|.++|++|+|||+||.+.    ...|++..|.||+.
T Consensus       146 ~i~~-~~~~~~~l~~~~~~e~l~~~~~~~~~~~-~~~~~~k~~~i~~lP~vL~i~l~Rf~~~~~~~~~~K~~~~v~fp~~  223 (347)
T d1nbfa_         146 SIKG-KKNIFESFVDYVAVEQLDGDNKYDAGEH-GLQEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFPEQ  223 (347)
T ss_dssp             ECTT-CCBHHHHHHHHTCCEEECGGGCEECSTT-CEECEEEEEEEEECCSEEEEEEECEEEETTTTEEEECCCCCBCCSE
T ss_pred             cccc-ccchhhhHHhhcchheeccccccccccC-cceeccEEEEEEecCChheEeeeeeeeccccCcccccCceEeeeee
Confidence            9974 6899999999999999999887777765 5678999999999999999999999753    34699999999999


Q ss_pred             CCCCCCcCCCC-CCcceeEEEEEEEEecCCCCCCCCeEEEEEEc-CCCCEEEEeCCceeeechhhhcCC-----------
Q 004724          410 LDLSPYMSDGG-DRTDVYKLYAVVVHVDMLNASFFGHYICYVKD-FRGHWYRVDDCKVTSVDLEEVLSQ-----------  476 (733)
Q Consensus       410 LdL~~~~~~~~-~~~~~Y~L~aVV~H~G~~~ss~~GHY~a~vr~-~~g~W~~fnDs~V~~v~~e~vl~~-----------  476 (733)
                      |||.+|+.... .....|+|+|||+|.|...+   |||+||+|+ .+++||+|||+.|+++++++|+..           
T Consensus       224 Ldl~~~~~~~~~~~~~~Y~L~~vI~H~G~~~~---GHY~~~~~~~~~~~W~~fnD~~V~~v~~~ev~~~~~g~~~~~~~~  300 (347)
T d1nbfa_         224 LPLDEFLQKTDPKDPANYILHAVLVHSGDNHG---GHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGHDDDLSV  300 (347)
T ss_dssp             EECGGGBSSCCTTSCCEEEEEEEEEEEEETTE---EEEEEEECTTSSSCCEEEETTEEEECCHHHHTGGGSCCCCSCCST
T ss_pred             eccccccccccccCccceeeEEEEEecCCCCC---CEEEEeeecCCCCEEEEEECCceEECCHHHHHHhhcCCCcccccc
Confidence            99999987654 34578999999999998644   999999997 467999999999999999999732           


Q ss_pred             ----CcEEEEEEEcCCC
Q 004724          477 ----GAYMLLYNRVSAR  489 (733)
Q Consensus       477 ----~AYiLfY~R~~~~  489 (733)
                          +||||||+|.+..
T Consensus       301 ~~~~~aYiLfY~r~~~~  317 (347)
T d1nbfa_         301 RHCTNAYMLVYIRESKL  317 (347)
T ss_dssp             TTTEEEEEEEEEEGGGH
T ss_pred             CCCCCEEEEEEEecCch
Confidence                5999999998643
>d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2dana1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing protein 10, ZMYND10 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2jw6a1 g.85.1.1 (A:503-540) Zinc finger MYND domain-containing protein 2, MTG8 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2dj8a1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing protein 2, MTG8 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x4sa1 g.85.1.2 (A:8-53) Zinc finger HIT domain containing protein 2, ZNHIT2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure